Query 023151
Match_columns 286
No_of_seqs 141 out of 259
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 17:12:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ais_B TFB TFIIB, protein (tra 100.0 5.5E-33 1.9E-37 242.5 22.0 169 2-183 15-191 (200)
2 4bbr_M Transcription initiatio 100.0 3.6E-34 1.2E-38 272.2 9.1 175 2-189 132-324 (345)
3 1c9b_A General transcription f 100.0 6.2E-29 2.1E-33 218.2 21.6 171 2-185 11-187 (207)
4 3k7a_M Transcription initiatio 100.0 2.2E-31 7.5E-36 252.4 3.9 171 2-185 132-320 (345)
5 3m03_A ORC6, origin recognitio 99.9 1.3E-23 4.4E-28 166.4 9.6 87 93-183 3-89 (95)
6 1zp2_A RNA polymerase II holoe 99.8 5E-18 1.7E-22 151.8 16.8 167 3-183 35-216 (235)
7 2ivx_A Cyclin-T2; transcriptio 99.7 2.7E-15 9.1E-20 135.4 18.8 169 3-183 38-236 (257)
8 3rgf_B Cyclin-C; protein kinas 99.7 9.5E-15 3.2E-19 134.6 20.7 167 3-184 50-239 (285)
9 2i53_A Cyclin K; cell cycle, t 99.6 2.3E-15 7.9E-20 135.5 15.5 168 3-183 48-247 (258)
10 2w96_A G1/S-specific cyclin-D1 99.6 4.5E-14 1.5E-18 128.7 19.6 171 3-186 64-256 (271)
11 2b9r_A Human cyclin B1; cell c 99.6 1.2E-14 4.2E-19 132.6 15.8 171 3-186 45-224 (269)
12 2cch_B Cyclin A2, cyclin-A; co 99.6 6.9E-14 2.3E-18 126.8 18.1 172 3-186 46-227 (260)
13 2pk2_A Cyclin-T1, protein TAT; 99.5 1.1E-14 3.7E-19 138.8 7.9 169 3-183 45-243 (358)
14 1ais_B TFB TFIIB, protein (tra 99.5 2E-13 6.7E-18 118.6 12.0 88 3-94 112-199 (200)
15 1jkw_A Cyclin H; cell cycle, c 99.5 9.9E-13 3.4E-17 123.4 17.1 168 3-183 64-257 (323)
16 1g3n_C V-cyclin; cyclin-depend 99.4 7.6E-12 2.6E-16 113.1 19.1 168 3-183 58-244 (257)
17 2f2c_A Cyclin homolog, V-cycli 99.4 2E-11 7E-16 110.1 21.6 169 3-184 59-245 (254)
18 1w98_B Cyclin E, G1/S-specific 99.4 2.3E-11 7.7E-16 111.9 16.8 165 3-186 57-241 (283)
19 3g33_B CCND3 protein; Ser/Thr 99.3 2.9E-10 1E-14 105.8 21.9 174 3-189 78-269 (306)
20 1c9b_A General transcription f 99.2 3.2E-11 1.1E-15 105.3 8.7 87 3-93 106-192 (207)
21 4bbr_M Transcription initiatio 98.6 6.5E-09 2.2E-13 98.6 0.0 86 3-92 239-324 (345)
22 3k7a_M Transcription initiatio 98.4 4.7E-08 1.6E-12 92.3 0.0 83 3-89 239-321 (345)
23 3m03_A ORC6, origin recognitio 97.9 4.8E-05 1.6E-09 60.0 8.7 84 2-88 5-91 (95)
24 1f5q_B Gamma herpesvirus cycli 97.9 0.002 6.8E-08 58.2 20.4 166 3-183 56-238 (252)
25 2cch_B Cyclin A2, cyclin-A; co 97.0 0.0012 4.3E-08 59.1 7.1 85 3-89 143-227 (260)
26 1zp2_A RNA polymerase II holoe 97.0 0.0063 2.2E-07 53.6 11.6 86 95-188 34-129 (235)
27 3rgf_B Cyclin-C; protein kinas 96.6 0.058 2E-06 49.1 15.4 92 59-167 16-114 (285)
28 2f2c_A Cyclin homolog, V-cycli 96.6 0.014 4.9E-07 51.9 10.9 83 3-88 156-246 (254)
29 2b9r_A Human cyclin B1; cell c 96.6 0.0016 5.5E-08 58.9 4.3 82 3-88 142-223 (269)
30 2w96_A G1/S-specific cyclin-D1 96.4 0.0055 1.9E-07 55.2 6.5 89 3-93 161-260 (271)
31 1g3n_C V-cyclin; cyclin-depend 96.3 0.015 5.1E-07 52.0 9.2 85 3-89 155-247 (257)
32 2ivx_A Cyclin-T2; transcriptio 96.2 0.032 1.1E-06 49.6 10.4 64 95-167 37-101 (257)
33 2i53_A Cyclin K; cell cycle, t 95.9 0.063 2.1E-06 47.5 10.8 65 95-168 47-112 (258)
34 1jkw_A Cyclin H; cell cycle, c 95.6 0.059 2E-06 50.0 10.0 67 95-170 63-132 (323)
35 3g33_B CCND3 protein; Ser/Thr 95.3 0.095 3.2E-06 48.3 10.1 86 3-90 175-267 (306)
36 2pk2_A Cyclin-T1, protein TAT; 94.3 0.076 2.6E-06 50.1 6.8 64 95-167 44-108 (358)
37 1w98_B Cyclin E, G1/S-specific 92.8 0.52 1.8E-05 42.6 9.6 81 95-183 56-140 (283)
38 3h4c_A Transcription factor TF 89.8 0.63 2.1E-05 41.6 6.5 90 3-96 19-135 (260)
39 2r7g_A PP110, retinoblastoma-a 89.2 0.8 2.7E-05 43.4 7.2 79 3-82 222-300 (347)
40 4ell_A Retinoblastoma-associat 87.8 1.1 3.6E-05 43.5 7.1 80 3-83 286-365 (411)
41 1f5q_B Gamma herpesvirus cycli 85.8 5.1 0.00017 35.7 10.1 79 95-182 55-137 (252)
42 2qdj_A Retinoblastoma-associat 83.3 3.2 0.00011 38.5 7.8 98 3-107 6-108 (304)
43 2a6c_A Helix-turn-helix motif; 82.4 2.8 9.6E-05 30.2 5.7 45 136-180 10-54 (83)
44 2qdj_A Retinoblastoma-associat 78.5 4.2 0.00014 37.7 6.8 72 96-175 6-81 (304)
45 4elj_A Retinoblastoma-associat 78.1 3.6 0.00012 42.1 6.6 69 3-72 531-599 (656)
46 2jpc_A SSRB; DNA binding prote 77.3 3.2 0.00011 27.8 4.4 46 60-105 13-58 (61)
47 1uxc_A FRUR (1-57), fructose r 76.5 2.2 7.5E-05 30.4 3.4 22 158-179 1-22 (65)
48 4elj_A Retinoblastoma-associat 75.2 7.9 0.00027 39.6 8.2 75 2-79 7-84 (656)
49 3h4c_A Transcription factor TF 74.9 12 0.00041 33.4 8.3 63 96-164 19-82 (260)
50 1t6s_A Conserved hypothetical 74.7 0.75 2.6E-05 39.1 0.5 117 45-183 11-131 (162)
51 1x3u_A Transcriptional regulat 74.5 6.3 0.00022 27.6 5.5 48 59-106 30-77 (79)
52 1tc3_C Protein (TC3 transposas 74.2 2.3 8E-05 26.5 2.8 26 156-181 20-45 (51)
53 3la7_A Global nitrogen regulat 74.0 24 0.00083 29.6 10.0 35 155-194 191-225 (243)
54 2fmy_A COOA, carbon monoxide o 71.4 6.9 0.00024 32.3 5.8 29 155-183 165-193 (220)
55 3neu_A LIN1836 protein; struct 70.2 36 0.0012 26.5 10.7 102 75-182 13-121 (125)
56 3mn2_A Probable ARAC family tr 69.6 26 0.00089 26.0 8.3 31 57-90 15-45 (108)
57 3ulq_B Transcriptional regulat 69.5 4.3 0.00015 30.4 3.7 47 59-105 43-89 (90)
58 3e6c_C CPRK, cyclic nucleotide 68.8 8.3 0.00028 32.6 5.9 36 155-195 175-210 (250)
59 3dkw_A DNR protein; CRP-FNR, H 68.7 6.4 0.00022 32.4 5.0 37 154-195 175-211 (227)
60 3i4p_A Transcriptional regulat 68.6 7.7 0.00026 31.6 5.4 33 151-183 11-43 (162)
61 2oz6_A Virulence factor regula 67.9 4.4 0.00015 32.9 3.8 28 156-183 163-190 (207)
62 1fse_A GERE; helix-turn-helix 67.8 11 0.00038 25.8 5.4 46 60-105 26-71 (74)
63 2xi8_A Putative transcription 67.5 4.1 0.00014 27.1 3.0 24 156-179 13-36 (66)
64 3d0s_A Transcriptional regulat 67.1 5.9 0.0002 32.8 4.5 29 155-183 175-203 (227)
65 3bro_A Transcriptional regulat 67.0 20 0.00067 27.2 7.2 52 137-195 32-83 (141)
66 2x4h_A Hypothetical protein SS 66.9 17 0.0006 28.0 7.0 30 154-183 28-57 (139)
67 3e97_A Transcriptional regulat 66.8 5.8 0.0002 32.9 4.4 35 155-194 173-207 (231)
68 3omt_A Uncharacterized protein 66.8 4.3 0.00015 28.1 3.0 24 157-180 21-44 (73)
69 3tgn_A ADC operon repressor AD 66.7 8.6 0.00029 29.6 5.1 52 135-196 34-85 (146)
70 3dv8_A Transcriptional regulat 66.6 5.9 0.0002 32.4 4.4 34 156-194 168-201 (220)
71 1r69_A Repressor protein CI; g 66.5 4.4 0.00015 27.2 3.0 24 156-179 13-36 (69)
72 3ryp_A Catabolite gene activat 66.3 5.1 0.00017 32.6 3.8 28 156-183 166-193 (210)
73 1jhg_A Trp operon repressor; c 66.3 5.4 0.00018 31.3 3.8 27 157-183 58-84 (101)
74 2r1j_L Repressor protein C2; p 66.1 4.6 0.00016 27.0 3.0 23 157-179 18-40 (68)
75 3t76_A VANU, transcriptional r 65.6 4.4 0.00015 30.3 3.0 26 155-180 35-60 (88)
76 2gau_A Transcriptional regulat 65.5 6.5 0.00022 32.6 4.4 35 155-194 178-212 (232)
77 3o9x_A Uncharacterized HTH-typ 65.3 7.7 0.00026 30.3 4.6 27 153-179 80-106 (133)
78 2jt1_A PEFI protein; solution 65.0 6.2 0.00021 29.2 3.7 29 155-183 22-50 (77)
79 1p4w_A RCSB; solution structur 64.8 11 0.00038 28.7 5.3 63 38-106 33-95 (99)
80 2w7n_A TRFB transcriptional re 64.7 16 0.00054 28.5 6.2 43 136-183 18-60 (101)
81 4b8x_A SCO5413, possible MARR- 64.7 7.3 0.00025 30.9 4.4 55 137-198 33-87 (147)
82 1ft9_A Carbon monoxide oxidati 64.6 6.7 0.00023 32.5 4.3 35 155-194 161-195 (222)
83 2pn6_A ST1022, 150AA long hypo 64.6 11 0.00036 30.0 5.4 37 153-194 13-49 (150)
84 2d1h_A ST1889, 109AA long hypo 64.6 16 0.00056 26.4 6.1 36 155-195 34-69 (109)
85 1zug_A Phage 434 CRO protein; 64.4 5.1 0.00017 27.1 3.0 24 156-179 15-38 (71)
86 3kz3_A Repressor protein CI; f 64.4 4.8 0.00017 28.5 3.0 25 156-180 24-48 (80)
87 2dbb_A Putative HTH-type trans 64.1 9 0.00031 30.5 4.9 30 154-183 20-49 (151)
88 2ef8_A C.ECOT38IS, putative tr 64.1 9.8 0.00033 26.6 4.6 26 154-179 20-45 (84)
89 1neq_A DNA-binding protein NER 64.1 6.2 0.00021 28.5 3.5 24 155-178 20-43 (74)
90 2cg4_A Regulatory protein ASNC 64.0 9.3 0.00032 30.5 4.9 36 154-194 19-54 (152)
91 2w48_A Sorbitol operon regulat 64.0 9.1 0.00031 34.6 5.4 39 153-196 17-56 (315)
92 3b7h_A Prophage LP1 protein 11 63.9 6.1 0.00021 27.3 3.4 25 155-179 18-42 (78)
93 2zcw_A TTHA1359, transcription 63.8 6 0.00021 32.2 3.8 29 155-183 144-172 (202)
94 4ev0_A Transcription regulator 63.8 5.9 0.0002 32.3 3.8 34 156-194 162-195 (216)
95 2rnj_A Response regulator prot 63.6 13 0.00044 27.2 5.3 61 39-105 29-89 (91)
96 2b5a_A C.BCLI; helix-turn-heli 63.2 5.5 0.00019 27.4 3.0 25 155-179 21-45 (77)
97 4fx0_A Probable transcriptiona 62.9 32 0.0011 27.2 8.0 45 137-183 31-78 (148)
98 3fmy_A HTH-type transcriptiona 62.9 3.6 0.00012 29.1 2.0 25 155-179 22-46 (73)
99 3lfp_A CSP231I C protein; tran 62.9 12 0.0004 27.5 5.0 48 60-107 14-61 (98)
100 3bs3_A Putative DNA-binding pr 62.7 5.7 0.0002 27.3 3.0 24 156-179 22-45 (76)
101 2cfx_A HTH-type transcriptiona 62.6 10 0.00035 30.0 5.0 29 155-183 17-45 (144)
102 2l8n_A Transcriptional repress 62.4 5.8 0.0002 28.3 3.0 22 157-178 9-30 (67)
103 2k9q_A Uncharacterized protein 62.4 5.7 0.00019 27.8 3.0 23 157-179 15-37 (77)
104 3b02_A Transcriptional regulat 62.3 5.8 0.0002 32.3 3.4 28 156-183 138-165 (195)
105 3qq6_A HTH-type transcriptiona 62.0 5.8 0.0002 28.2 3.0 25 156-180 22-46 (78)
106 3iwz_A CAP-like, catabolite ac 62.0 6.7 0.00023 32.3 3.8 34 156-194 186-219 (230)
107 2cyy_A Putative HTH-type trans 61.9 11 0.00036 30.1 4.9 29 155-183 19-47 (151)
108 1rzs_A Antirepressor, regulato 61.9 5.4 0.00019 27.5 2.7 21 158-178 11-31 (61)
109 2z99_A Putative uncharacterize 61.6 5 0.00017 35.6 3.1 114 45-183 19-137 (219)
110 2wiu_B HTH-type transcriptiona 61.5 7.5 0.00026 27.6 3.6 26 155-180 23-48 (88)
111 1je8_A Nitrate/nitrite respons 61.4 15 0.00051 26.5 5.3 60 40-105 22-81 (82)
112 2ewt_A BLDD, putative DNA-bind 61.3 7.7 0.00026 26.3 3.5 25 156-180 20-46 (71)
113 1adr_A P22 C2 repressor; trans 61.3 6.2 0.00021 27.0 3.0 23 157-179 18-40 (76)
114 3fx3_A Cyclic nucleotide-bindi 61.3 7.3 0.00025 32.4 4.0 34 153-191 174-207 (237)
115 1y7y_A C.AHDI; helix-turn-heli 61.2 6.4 0.00022 26.8 3.0 25 155-179 24-48 (74)
116 3s8q_A R-M controller protein; 60.8 6.3 0.00022 27.8 3.0 26 155-180 22-47 (82)
117 1zyb_A Transcription regulator 60.7 7 0.00024 32.7 3.8 29 155-183 184-212 (232)
118 2htj_A P fimbrial regulatory p 60.4 14 0.00048 26.4 4.9 27 157-183 14-40 (81)
119 1i1g_A Transcriptional regulat 60.3 12 0.00041 29.1 4.9 29 155-183 16-44 (141)
120 3f6w_A XRE-family like protein 59.5 6.7 0.00023 27.6 3.0 25 156-180 26-50 (83)
121 3oio_A Transcriptional regulat 59.1 53 0.0018 24.5 8.6 53 56-111 19-90 (113)
122 2kpj_A SOS-response transcript 59.0 11 0.00038 27.5 4.2 30 151-180 16-45 (94)
123 2p5v_A Transcriptional regulat 59.0 12 0.00043 30.1 4.9 29 155-183 22-50 (162)
124 1jko_C HIN recombinase, DNA-in 58.9 3.3 0.00011 26.2 1.1 23 158-180 22-44 (52)
125 4ghj_A Probable transcriptiona 58.8 6.6 0.00022 30.2 3.0 26 154-179 46-71 (101)
126 4ham_A LMO2241 protein; struct 58.7 8.5 0.00029 30.5 3.7 36 155-195 35-71 (134)
127 2ia0_A Putative HTH-type trans 58.7 12 0.00042 30.9 4.9 30 154-183 28-57 (171)
128 1qgp_A Protein (double strande 58.7 9.4 0.00032 27.8 3.7 27 157-183 31-57 (77)
129 2hr3_A Probable transcriptiona 58.6 24 0.00081 27.0 6.3 36 155-195 48-83 (147)
130 2e1c_A Putative HTH-type trans 58.5 12 0.00043 30.9 4.9 29 155-183 39-67 (171)
131 4aik_A Transcriptional regulat 58.4 15 0.00051 29.3 5.2 57 136-200 28-84 (151)
132 3eus_A DNA-binding protein; st 58.3 7.2 0.00025 28.2 3.0 28 153-180 23-50 (86)
133 3c57_A Two component transcrip 57.9 18 0.00061 26.8 5.3 60 40-105 28-87 (95)
134 1ku9_A Hypothetical protein MJ 57.8 23 0.0008 26.9 6.1 36 155-195 39-74 (152)
135 2w25_A Probable transcriptiona 57.7 14 0.00047 29.4 4.9 35 155-194 19-53 (150)
136 2fbh_A Transcriptional regulat 57.6 28 0.00097 26.4 6.6 53 136-196 34-86 (146)
137 2x48_A CAG38821; archeal virus 57.6 7.8 0.00027 25.4 2.9 23 157-179 31-53 (55)
138 1x57_A Endothelial differentia 57.5 12 0.0004 27.0 4.1 29 152-180 21-49 (91)
139 3bd1_A CRO protein; transcript 57.5 8.6 0.00029 27.1 3.3 22 159-180 13-34 (79)
140 2ict_A Antitoxin HIGA; helix-t 57.4 9.4 0.00032 27.7 3.6 24 157-180 21-44 (94)
141 3kcc_A Catabolite gene activat 57.2 8.7 0.0003 33.0 3.8 34 156-194 216-249 (260)
142 1j1v_A Chromosomal replication 57.2 30 0.001 26.1 6.5 72 17-90 5-77 (94)
143 3fm5_A Transcriptional regulat 57.0 38 0.0013 26.1 7.4 52 137-196 37-88 (150)
144 1lmb_3 Protein (lambda repress 56.9 7.7 0.00026 27.9 3.0 25 156-180 29-53 (92)
145 3iwf_A Transcription regulator 56.6 14 0.00049 28.6 4.7 44 138-181 16-59 (107)
146 3e6c_C CPRK, cyclic nucleotide 56.6 32 0.0011 28.9 7.3 49 39-87 146-204 (250)
147 2y75_A HTH-type transcriptiona 56.5 29 0.00099 26.8 6.5 50 141-195 9-59 (129)
148 3op9_A PLI0006 protein; struct 56.4 9.4 0.00032 28.8 3.5 24 157-180 22-45 (114)
149 2o8x_A Probable RNA polymerase 56.4 15 0.00053 24.8 4.4 32 156-187 30-61 (70)
150 3oop_A LIN2960 protein; protei 56.3 24 0.00081 27.1 6.0 52 136-196 34-85 (143)
151 3sqn_A Conserved domain protei 55.8 9.3 0.00032 37.1 4.2 33 155-187 106-138 (485)
152 2bgc_A PRFA; bacterial infecti 55.7 9.3 0.00032 32.1 3.7 29 155-183 166-196 (238)
153 3lfp_A CSP231I C protein; tran 55.6 13 0.00046 27.2 4.2 26 157-182 14-39 (98)
154 2frh_A SARA, staphylococcal ac 55.2 18 0.00062 27.8 5.1 54 136-196 34-87 (127)
155 4ham_A LMO2241 protein; struct 54.6 74 0.0025 24.8 10.2 55 76-133 15-76 (134)
156 2o3f_A Putative HTH-type trans 54.6 10 0.00034 29.5 3.5 25 157-181 39-63 (111)
157 2gxg_A 146AA long hypothetical 54.5 27 0.00091 26.6 6.0 36 155-195 48-83 (146)
158 3g5g_A Regulatory protein; tra 54.3 8.9 0.00031 28.8 3.0 28 153-180 37-64 (99)
159 2ppx_A AGR_C_3184P, uncharacte 53.8 9.3 0.00032 28.3 3.0 25 155-179 41-65 (99)
160 1q1h_A TFE, transcription fact 53.8 20 0.00068 26.8 5.0 38 153-195 29-66 (110)
161 2lnb_A Z-DNA-binding protein 1 53.5 12 0.0004 28.3 3.5 42 50-91 24-65 (80)
162 3bpv_A Transcriptional regulat 53.5 34 0.0012 25.7 6.4 51 136-195 26-76 (138)
163 2qvo_A Uncharacterized protein 53.4 33 0.0011 25.0 6.1 29 155-183 28-56 (95)
164 3tqn_A Transcriptional regulat 53.1 12 0.00042 28.7 3.7 36 155-195 30-66 (113)
165 1u78_A TC3 transposase, transp 52.9 14 0.00047 28.4 4.0 78 94-181 23-103 (141)
166 3neu_A LIN1836 protein; struct 52.7 16 0.00054 28.7 4.4 36 155-195 34-70 (125)
167 2ofy_A Putative XRE-family tra 52.5 10 0.00035 26.9 3.0 22 159-180 29-50 (86)
168 1qbj_A Protein (double-strande 52.5 19 0.00066 26.6 4.6 27 157-183 27-53 (81)
169 3ech_A MEXR, multidrug resista 52.1 51 0.0017 25.1 7.3 52 136-196 34-85 (142)
170 1xn7_A Hypothetical protein YH 52.1 16 0.00056 26.8 4.1 28 156-183 15-42 (78)
171 1xn7_A Hypothetical protein YH 51.9 15 0.0005 27.1 3.8 36 82-117 5-41 (78)
172 3jw4_A Transcriptional regulat 51.8 23 0.00078 27.4 5.2 54 137-197 39-92 (148)
173 2fa5_A Transcriptional regulat 51.3 42 0.0014 26.1 6.8 36 155-195 61-96 (162)
174 2k9s_A Arabinose operon regula 51.3 30 0.001 25.6 5.7 42 140-181 3-44 (107)
175 3pvv_A Chromosomal replication 51.2 43 0.0015 25.8 6.6 74 16-91 8-81 (101)
176 3oou_A LIN2118 protein; protei 50.7 35 0.0012 25.3 6.0 42 139-181 4-45 (108)
177 1zyb_A Transcription regulator 50.6 43 0.0015 27.7 7.1 68 19-87 142-213 (232)
178 3eco_A MEPR; mutlidrug efflux 50.5 31 0.0011 26.1 5.8 53 137-196 29-81 (139)
179 3cec_A Putative antidote prote 50.4 11 0.00038 27.9 3.0 24 156-179 30-53 (104)
180 3by6_A Predicted transcription 50.4 14 0.00048 29.1 3.7 35 156-195 33-68 (126)
181 2vn2_A DNAD, chromosome replic 50.3 44 0.0015 26.2 6.7 34 157-195 51-84 (128)
182 3b02_A Transcriptional regulat 50.3 33 0.0011 27.6 6.1 49 39-87 109-166 (195)
183 1b0n_A Protein (SINR protein); 50.2 11 0.00039 27.8 3.0 25 156-180 13-37 (111)
184 2l49_A C protein; P2 bacteriop 50.2 13 0.00043 27.1 3.2 24 156-179 16-39 (99)
185 2jpc_A SSRB; DNA binding prote 50.2 18 0.00061 23.9 3.8 27 157-183 13-39 (61)
186 3lwf_A LIN1550 protein, putati 50.1 28 0.00096 28.7 5.7 51 141-196 27-78 (159)
187 2l1p_A DNA-binding protein SAT 50.0 11 0.00036 28.8 2.7 23 157-179 32-54 (83)
188 3trb_A Virulence-associated pr 49.8 12 0.00042 28.5 3.2 28 153-180 23-50 (104)
189 1j9i_A GPNU1 DBD;, terminase s 49.8 8 0.00027 27.1 2.0 23 157-179 2-24 (68)
190 3oou_A LIN2118 protein; protei 49.5 55 0.0019 24.2 6.9 32 57-91 18-49 (108)
191 4hbl_A Transcriptional regulat 49.2 26 0.0009 27.2 5.2 52 137-197 39-90 (149)
192 3mlf_A Transcriptional regulat 49.2 14 0.00048 28.2 3.5 26 155-180 34-59 (111)
193 3ivp_A Putative transposon-rel 49.1 14 0.00049 28.3 3.6 27 154-180 22-48 (126)
194 2ek5_A Predicted transcription 48.9 18 0.00061 28.7 4.2 36 155-195 25-61 (129)
195 2b0l_A GTP-sensing transcripti 48.8 13 0.00045 28.4 3.2 28 156-183 41-69 (102)
196 2p7v_B Sigma-70, RNA polymeras 48.8 27 0.00093 23.8 4.7 28 156-183 24-51 (68)
197 2gau_A Transcriptional regulat 48.7 37 0.0013 27.9 6.3 48 40-87 151-207 (232)
198 1sfx_A Conserved hypothetical 48.6 20 0.0007 25.7 4.2 35 156-195 33-67 (109)
199 3lsg_A Two-component response 48.6 76 0.0026 23.1 9.0 50 58-110 17-85 (103)
200 4ich_A Transcriptional regulat 48.2 11 0.00036 33.3 3.0 124 60-189 43-172 (311)
201 3r0a_A Putative transcriptiona 48.0 30 0.001 26.8 5.3 46 145-195 29-75 (123)
202 3cuo_A Uncharacterized HTH-typ 47.9 24 0.00084 25.2 4.5 37 154-195 35-71 (99)
203 2eby_A Putative HTH-type trans 47.5 13 0.00044 27.9 3.0 28 153-180 20-47 (113)
204 3nqo_A MARR-family transcripti 47.5 45 0.0015 27.3 6.7 38 155-197 55-92 (189)
205 2jt1_A PEFI protein; solution 47.3 19 0.00064 26.5 3.8 14 94-107 25-38 (77)
206 3bdd_A Regulatory protein MARR 47.2 80 0.0027 23.6 7.6 28 156-183 44-71 (142)
207 2pmi_B PHO85 cyclin PHO80, ami 47.2 1.7E+02 0.0059 26.8 11.8 96 3-100 81-178 (293)
208 2nnn_A Probable transcriptiona 47.1 72 0.0025 23.8 7.4 51 136-195 35-85 (140)
209 1z6r_A MLC protein; transcript 46.9 26 0.00087 32.4 5.5 40 151-195 24-63 (406)
210 3la7_A Global nitrogen regulat 46.8 41 0.0014 28.2 6.4 48 40-87 163-220 (243)
211 2a61_A Transcriptional regulat 46.5 44 0.0015 25.3 6.0 35 156-195 46-80 (145)
212 3ewt_E Tumor necrosis factor r 46.3 9.1 0.00031 22.8 1.5 21 94-114 2-22 (25)
213 3lsg_A Two-component response 46.3 51 0.0018 24.1 6.2 37 145-181 7-43 (103)
214 3fx3_A Cyclic nucleotide-bindi 46.3 39 0.0013 27.8 6.1 51 39-90 151-207 (237)
215 2fmy_A COOA, carbon monoxide o 46.2 41 0.0014 27.4 6.2 29 59-87 166-194 (220)
216 2heo_A Z-DNA binding protein 1 46.2 20 0.0007 25.0 3.7 29 155-183 23-51 (67)
217 3mn2_A Probable ARAC family tr 46.1 52 0.0018 24.2 6.3 39 142-181 4-42 (108)
218 2pg4_A Uncharacterized protein 45.6 49 0.0017 23.9 5.9 31 153-183 26-57 (95)
219 3nrv_A Putative transcriptiona 45.5 97 0.0033 23.5 9.0 52 136-196 37-88 (148)
220 2o38_A Hypothetical protein; a 45.4 14 0.00049 28.9 3.0 25 155-179 51-75 (120)
221 1zug_A Phage 434 CRO protein; 45.3 44 0.0015 22.1 5.3 42 60-107 16-58 (71)
222 1ixc_A CBNR, LYSR-type regulat 45.2 43 0.0015 28.0 6.3 30 62-91 17-46 (294)
223 2xi8_A Putative transcription 45.0 39 0.0013 22.0 4.9 42 60-107 14-57 (66)
224 2fjr_A Repressor protein CI; g 44.8 16 0.00056 29.8 3.4 24 155-179 19-42 (189)
225 3szt_A QCSR, quorum-sensing co 44.5 27 0.00093 30.0 5.0 47 59-105 189-235 (237)
226 3vk0_A NHTF, transcriptional r 44.3 17 0.00057 27.6 3.2 25 156-180 33-57 (114)
227 1ylf_A RRF2 family protein; st 44.2 37 0.0013 27.2 5.4 50 141-195 14-63 (149)
228 2p5k_A Arginine repressor; DNA 44.2 42 0.0015 22.2 5.0 27 155-181 17-48 (64)
229 3ryp_A Catabolite gene activat 44.2 37 0.0013 27.2 5.5 47 41-87 139-194 (210)
230 1ku3_A Sigma factor SIGA; heli 44.0 32 0.0011 23.9 4.4 28 156-183 29-56 (73)
231 1fse_A GERE; helix-turn-helix 43.9 30 0.001 23.5 4.3 28 156-183 25-52 (74)
232 3hug_A RNA polymerase sigma fa 43.8 32 0.0011 24.9 4.7 28 156-183 52-79 (92)
233 3f52_A CLP gene regulator (CLG 43.6 16 0.00054 27.6 3.0 25 156-180 40-64 (117)
234 1on2_A Transcriptional regulat 43.5 47 0.0016 25.6 5.8 28 156-183 21-48 (142)
235 2wus_R RODZ, putative uncharac 43.3 21 0.00071 27.7 3.7 28 153-180 16-43 (112)
236 2k9s_A Arabinose operon regula 43.2 96 0.0033 22.7 9.3 51 59-112 19-88 (107)
237 1je8_A Nitrate/nitrite respons 43.2 32 0.0011 24.7 4.4 28 156-183 35-62 (82)
238 3dv8_A Transcriptional regulat 43.2 44 0.0015 27.0 5.9 47 41-87 147-196 (220)
239 2rdp_A Putative transcriptiona 43.0 50 0.0017 25.2 5.9 51 136-195 39-89 (150)
240 1l9z_H Sigma factor SIGA; heli 42.9 1.7E+02 0.0059 28.1 10.8 26 156-181 394-419 (438)
241 1x3u_A Transcriptional regulat 42.9 33 0.0011 23.7 4.4 28 156-183 30-57 (79)
242 3dkw_A DNR protein; CRP-FNR, H 42.8 49 0.0017 26.9 6.1 31 57-87 175-205 (227)
243 1zs4_A Regulatory protein CII; 42.6 20 0.00067 27.2 3.2 24 158-181 25-48 (83)
244 3tqn_A Transcriptional regulat 42.4 61 0.0021 24.6 6.2 55 76-133 10-71 (113)
245 1l3l_A Transcriptional activat 42.3 41 0.0014 28.5 5.7 46 60-105 188-233 (234)
246 3hhg_A Transcriptional regulat 42.2 67 0.0023 26.9 7.1 55 62-121 19-79 (306)
247 2cw1_A SN4M; lambda CRO fold, 42.1 20 0.00069 25.5 3.1 21 159-179 15-35 (65)
248 3t76_A VANU, transcriptional r 42.1 33 0.0011 25.3 4.5 42 60-107 37-79 (88)
249 3u2r_A Regulatory protein MARR 42.0 22 0.00074 28.3 3.7 52 137-195 44-95 (168)
250 3t8r_A Staphylococcus aureus C 41.7 29 0.001 27.8 4.4 50 142-196 12-62 (143)
251 1jhf_A LEXA repressor; LEXA SO 41.6 35 0.0012 28.2 5.1 33 151-183 19-52 (202)
252 3frw_A Putative Trp repressor 41.6 28 0.00097 27.5 4.1 35 149-183 50-84 (107)
253 3c57_A Two component transcrip 41.5 34 0.0012 25.3 4.5 27 157-183 42-68 (95)
254 3f3x_A Transcriptional regulat 41.4 76 0.0026 24.1 6.7 25 159-183 52-76 (144)
255 2oz6_A Virulence factor regula 41.4 40 0.0014 27.0 5.3 29 59-87 163-191 (207)
256 3deu_A Transcriptional regulat 41.3 31 0.0011 27.6 4.5 39 154-197 65-103 (166)
257 2ek5_A Predicted transcription 41.3 34 0.0012 27.0 4.7 57 76-135 5-68 (129)
258 2heo_A Z-DNA binding protein 1 41.0 25 0.00085 24.6 3.5 29 58-86 23-51 (67)
259 3bs3_A Putative DNA-binding pr 41.0 46 0.0016 22.4 4.9 42 60-107 23-66 (76)
260 2pij_A Prophage PFL 6 CRO; tra 41.0 44 0.0015 22.3 4.7 20 159-178 15-34 (67)
261 2nyx_A Probable transcriptiona 41.0 67 0.0023 25.4 6.6 34 157-195 59-92 (168)
262 2zcm_A Biofilm operon icaabcd 41.0 42 0.0014 26.3 5.3 51 139-189 9-59 (192)
263 3k2z_A LEXA repressor; winged 40.9 38 0.0013 28.2 5.2 32 152-183 19-50 (196)
264 2ewt_A BLDD, putative DNA-bind 40.9 59 0.002 21.6 5.4 42 60-107 21-66 (71)
265 3k8u_A Putative ABC transporte 40.9 22 0.00076 28.4 3.6 38 35-72 7-44 (156)
266 2jvl_A TRMBF1; coactivator, he 40.8 33 0.0011 25.9 4.4 25 155-179 47-71 (107)
267 2pex_A Transcriptional regulat 40.6 57 0.0019 25.1 5.9 52 136-196 44-95 (153)
268 2k02_A Ferrous iron transport 40.6 19 0.00066 27.2 3.0 27 157-183 16-42 (87)
269 3d0s_A Transcriptional regulat 40.6 45 0.0016 27.2 5.6 29 59-87 176-204 (227)
270 1o5l_A Transcriptional regulat 40.5 5.9 0.0002 32.8 0.0 30 154-183 161-190 (213)
271 3oio_A Transcriptional regulat 40.5 39 0.0013 25.3 4.8 42 139-181 6-47 (113)
272 3c3w_A Two component transcrip 40.5 58 0.002 26.8 6.3 47 61-107 165-211 (225)
273 2dk5_A DNA-directed RNA polyme 40.3 43 0.0015 25.1 4.9 53 135-195 16-69 (91)
274 2zcw_A TTHA1359, transcription 40.3 43 0.0015 26.9 5.4 47 41-87 118-173 (202)
275 2hoe_A N-acetylglucosamine kin 40.3 25 0.00086 32.3 4.3 36 155-195 31-66 (380)
276 3gbg_A TCP pilus virulence reg 40.2 1.4E+02 0.0048 25.3 9.0 35 54-92 179-213 (276)
277 2b5a_A C.BCLI; helix-turn-heli 40.2 48 0.0016 22.4 4.9 42 60-107 23-66 (77)
278 2q0o_A Probable transcriptiona 40.1 40 0.0014 28.6 5.3 46 60-105 190-235 (236)
279 3iwz_A CAP-like, catabolite ac 40.1 43 0.0015 27.3 5.4 48 40-87 158-214 (230)
280 3g3z_A NMB1585, transcriptiona 40.0 1E+02 0.0034 23.4 7.3 51 137-196 29-79 (145)
281 1tty_A Sigma-A, RNA polymerase 40.0 37 0.0013 24.5 4.4 28 156-183 37-64 (87)
282 1uly_A Hypothetical protein PH 39.7 45 0.0015 28.2 5.5 36 155-195 31-66 (192)
283 2r7g_A PP110, retinoblastoma-a 39.4 1.2E+02 0.0041 28.5 8.8 124 41-171 103-292 (347)
284 1neq_A DNA-binding protein NER 39.4 19 0.00066 25.8 2.7 42 59-107 21-62 (74)
285 3cdh_A Transcriptional regulat 39.2 53 0.0018 25.4 5.5 37 154-195 54-90 (155)
286 3b79_A Toxin secretion ATP-bin 39.0 31 0.0011 26.1 4.1 48 46-107 8-55 (129)
287 1z91_A Organic hydroperoxide r 39.0 42 0.0014 25.6 4.8 34 157-195 54-87 (147)
288 3kp7_A Transcriptional regulat 38.8 26 0.00089 27.1 3.6 48 137-194 36-83 (151)
289 3bj6_A Transcriptional regulat 38.8 37 0.0013 26.1 4.5 36 156-196 53-88 (152)
290 3hsr_A HTH-type transcriptiona 38.7 80 0.0028 24.0 6.5 52 137-197 34-85 (140)
291 1y0u_A Arsenical resistance op 38.6 38 0.0013 24.6 4.3 28 156-183 42-69 (96)
292 3jth_A Transcription activator 38.5 50 0.0017 23.9 5.0 37 154-195 33-69 (98)
293 3kxa_A NGO0477 protein, putati 38.4 25 0.00086 28.1 3.5 27 154-180 78-104 (141)
294 1zx4_A P1 PARB, plasmid partit 38.4 33 0.0011 29.6 4.4 25 156-180 23-47 (192)
295 2k02_A Ferrous iron transport 38.3 20 0.00067 27.2 2.7 36 82-117 5-41 (87)
296 1y7y_A C.AHDI; helix-turn-heli 38.3 55 0.0019 21.8 4.9 42 60-107 26-69 (74)
297 1adr_A P22 C2 repressor; trans 38.3 53 0.0018 22.0 4.8 41 61-107 19-61 (76)
298 2y75_A HTH-type transcriptiona 38.3 61 0.0021 24.9 5.7 36 51-86 17-52 (129)
299 1qbj_A Protein (double-strande 38.1 40 0.0014 24.8 4.3 29 59-87 26-54 (81)
300 2hin_A GP39, repressor protein 38.0 26 0.0009 25.3 3.2 21 159-179 12-32 (71)
301 1s3j_A YUSO protein; structura 37.9 40 0.0014 25.9 4.6 35 156-195 50-84 (155)
302 3kcc_A Catabolite gene activat 37.7 52 0.0018 27.9 5.7 47 41-87 189-244 (260)
303 1ft9_A Carbon monoxide oxidati 37.6 40 0.0014 27.6 4.8 29 59-87 162-190 (222)
304 3lwf_A LIN1550 protein, putati 37.5 59 0.002 26.7 5.8 40 48-87 32-71 (159)
305 2vn2_A DNAD, chromosome replic 37.3 91 0.0031 24.3 6.7 80 39-118 29-112 (128)
306 3kor_A Possible Trp repressor; 37.1 27 0.00093 28.1 3.4 31 152-182 70-100 (119)
307 1z05_A Transcriptional regulat 37.0 29 0.001 32.4 4.3 35 156-195 52-86 (429)
308 2ao9_A Phage protein; structur 37.0 74 0.0025 26.5 6.3 42 139-180 25-71 (155)
309 2l0k_A Stage III sporulation p 36.9 22 0.00074 27.1 2.7 23 158-180 21-43 (93)
310 3e6m_A MARR family transcripti 36.8 46 0.0016 26.1 4.9 35 157-196 67-101 (161)
311 2fbi_A Probable transcriptiona 36.8 52 0.0018 24.7 5.0 34 157-195 50-83 (142)
312 3b7h_A Prophage LP1 protein 11 36.5 54 0.0019 22.2 4.7 42 60-107 20-64 (78)
313 2hku_A A putative transcriptio 36.0 58 0.002 26.1 5.5 50 139-189 22-71 (215)
314 3mkl_A HTH-type transcriptiona 35.7 1.4E+02 0.0047 22.4 10.6 51 59-110 22-88 (120)
315 3hrs_A Metalloregulator SCAR; 35.6 34 0.0012 29.2 4.1 44 146-195 10-53 (214)
316 3s2w_A Transcriptional regulat 35.3 38 0.0013 26.5 4.1 37 155-196 62-98 (159)
317 3by6_A Predicted transcription 35.3 1.5E+02 0.0053 22.9 10.8 99 76-181 12-118 (126)
318 2hsg_A Glucose-resistance amyl 35.2 25 0.00087 30.7 3.3 24 157-180 2-25 (332)
319 1a04_A Nitrate/nitrite respons 34.9 59 0.002 26.2 5.4 43 62-104 171-213 (215)
320 3fzv_A Probable transcriptiona 34.9 53 0.0018 27.6 5.2 59 62-122 20-82 (306)
321 2qww_A Transcriptional regulat 34.8 44 0.0015 25.8 4.4 34 156-194 54-87 (154)
322 1stz_A Heat-inducible transcri 34.7 36 0.0012 31.5 4.4 29 155-183 34-64 (338)
323 2obp_A Putative DNA-binding pr 34.6 75 0.0026 24.3 5.5 48 136-183 13-62 (96)
324 3dn7_A Cyclic nucleotide bindi 34.6 8.3 0.00028 31.0 0.0 28 154-181 165-192 (194)
325 3e97_A Transcriptional regulat 34.5 73 0.0025 26.0 6.0 29 58-86 173-201 (231)
326 3pyf_A 4-diphosphocytidyl-2-C- 34.4 84 0.0029 28.2 6.8 55 16-70 69-134 (306)
327 1j5y_A Transcriptional regulat 34.4 67 0.0023 26.5 5.7 29 155-183 34-62 (187)
328 1z4h_A TORI, TOR inhibition pr 34.3 32 0.0011 23.8 3.2 24 157-180 10-33 (66)
329 3kz3_A Repressor protein CI; f 34.3 1E+02 0.0035 21.2 5.9 42 60-107 25-68 (80)
330 3eus_A DNA-binding protein; st 34.2 67 0.0023 22.8 5.0 44 59-108 26-71 (86)
331 3fym_A Putative uncharacterize 34.0 28 0.00095 27.4 3.1 25 156-180 15-39 (130)
332 2di3_A Bacterial regulatory pr 34.0 1E+02 0.0035 26.1 7.0 58 73-133 2-70 (239)
333 1s7o_A Hypothetical UPF0122 pr 33.9 55 0.0019 25.3 4.7 33 156-188 37-69 (113)
334 3cjn_A Transcriptional regulat 33.8 40 0.0014 26.3 4.0 36 155-195 64-99 (162)
335 1hw1_A FADR, fatty acid metabo 33.7 41 0.0014 28.4 4.3 36 155-195 28-64 (239)
336 4g0a_A Non-structural protein 33.5 19 0.00066 33.0 2.2 60 119-181 57-118 (317)
337 1lmb_3 Protein (lambda repress 33.1 66 0.0023 22.7 4.8 42 60-107 30-73 (92)
338 3ulq_B Transcriptional regulat 33.0 45 0.0015 24.6 3.9 28 156-183 43-70 (90)
339 1v4r_A Transcriptional repress 33.0 9.9 0.00034 28.4 0.2 27 157-183 34-61 (102)
340 1lj9_A Transcriptional regulat 32.9 46 0.0016 25.2 4.2 36 156-196 42-77 (144)
341 3ic7_A Putative transcriptiona 32.8 35 0.0012 26.6 3.5 103 74-183 10-122 (126)
342 1oyi_A Double-stranded RNA-bin 32.7 40 0.0014 25.3 3.6 33 158-195 31-63 (82)
343 3c7j_A Transcriptional regulat 32.5 43 0.0015 28.8 4.3 37 154-195 46-82 (237)
344 3boq_A Transcriptional regulat 32.4 71 0.0024 24.6 5.3 37 154-195 59-95 (160)
345 1xwr_A Regulatory protein CII; 32.4 22 0.00075 27.5 2.1 24 158-181 24-47 (97)
346 2ict_A Antitoxin HIGA; helix-t 32.4 87 0.003 22.3 5.4 41 61-107 22-64 (94)
347 2wiu_B HTH-type transcriptiona 32.4 60 0.002 22.6 4.4 42 60-107 25-68 (88)
348 3k69_A Putative transcription 32.4 48 0.0016 27.2 4.4 51 141-196 12-62 (162)
349 2kko_A Possible transcriptiona 32.3 70 0.0024 23.9 5.0 36 155-195 36-71 (108)
350 1bl0_A Protein (multiple antib 32.3 1.7E+02 0.0057 22.3 8.4 53 57-112 24-95 (129)
351 1y9q_A Transcriptional regulat 32.2 28 0.00097 28.4 3.0 25 156-180 23-47 (192)
352 2rnj_A Response regulator prot 31.7 44 0.0015 24.2 3.7 27 157-183 44-70 (91)
353 1bl0_A Protein (multiple antib 31.7 61 0.0021 24.9 4.7 42 139-181 10-51 (129)
354 2bnm_A Epoxidase; oxidoreducta 31.6 30 0.001 28.3 3.0 26 155-180 21-46 (198)
355 2qtq_A Transcriptional regulat 31.4 81 0.0028 24.7 5.6 51 139-189 18-68 (213)
356 2lkp_A Transcriptional regulat 31.1 53 0.0018 24.6 4.2 28 156-183 44-71 (119)
357 2x4h_A Hypothetical protein SS 31.1 1.6E+02 0.0054 22.3 7.1 32 58-90 29-60 (139)
358 2fxa_A Protease production reg 31.0 93 0.0032 26.0 6.1 54 136-198 45-98 (207)
359 3t8r_A Staphylococcus aureus C 31.0 59 0.002 25.9 4.6 37 50-86 18-54 (143)
360 3bja_A Transcriptional regulat 31.0 46 0.0016 24.9 3.8 36 155-195 45-80 (139)
361 2hzt_A Putative HTH-type trans 30.9 97 0.0033 23.0 5.6 36 155-195 25-61 (107)
362 2eth_A Transcriptional regulat 30.9 55 0.0019 25.4 4.3 34 157-195 58-91 (154)
363 3edp_A LIN2111 protein; APC883 30.6 49 0.0017 28.5 4.4 36 155-195 30-66 (236)
364 1xsv_A Hypothetical UPF0122 pr 30.4 66 0.0023 24.7 4.7 33 156-188 40-72 (113)
365 2h09_A Transcriptional regulat 30.3 55 0.0019 25.6 4.3 28 156-183 53-80 (155)
366 3qkx_A Uncharacterized HTH-typ 30.3 61 0.0021 24.9 4.5 36 154-189 24-60 (188)
367 2lkp_A Transcriptional regulat 30.3 64 0.0022 24.1 4.5 31 60-91 45-75 (119)
368 1r71_A Transcriptional repress 30.2 70 0.0024 27.0 5.2 41 136-180 35-75 (178)
369 1tbx_A ORF F-93, hypothetical 30.1 61 0.0021 23.4 4.2 36 155-195 20-59 (99)
370 3bqz_B HTH-type transcriptiona 30.1 74 0.0025 24.6 5.0 34 156-189 21-54 (194)
371 1ub9_A Hypothetical protein PH 30.1 42 0.0014 23.9 3.3 28 156-183 29-56 (100)
372 2bgc_A PRFA; bacterial infecti 30.0 74 0.0025 26.3 5.3 30 58-87 166-197 (238)
373 2auw_A Hypothetical protein NE 30.0 33 0.0011 29.1 3.0 39 142-180 74-126 (170)
374 1jgs_A Multiple antibiotic res 29.9 82 0.0028 23.6 5.1 28 156-183 47-74 (138)
375 3sxy_A Transcriptional regulat 29.9 43 0.0015 28.1 3.8 36 155-195 33-68 (218)
376 2g7s_A Transcriptional regulat 29.8 49 0.0017 25.5 3.9 34 156-189 27-60 (194)
377 3mzy_A RNA polymerase sigma-H 29.7 69 0.0023 24.4 4.7 28 156-183 123-150 (164)
378 3pyf_A 4-diphosphocytidyl-2-C- 29.6 77 0.0026 28.4 5.6 30 138-167 105-134 (306)
379 3mkl_A HTH-type transcriptiona 29.4 70 0.0024 24.1 4.6 43 138-181 5-47 (120)
380 2yve_A Transcriptional regulat 29.3 62 0.0021 25.5 4.5 36 154-189 20-56 (185)
381 2ijl_A AGR_C_4647P, molybdenum 29.1 64 0.0022 26.0 4.5 30 62-91 40-69 (135)
382 3s8q_A R-M controller protein; 29.1 1.4E+02 0.0048 20.4 6.3 42 60-107 24-67 (82)
383 2htj_A P fimbrial regulatory p 29.1 73 0.0025 22.4 4.4 28 60-87 14-41 (81)
384 1qgp_A Protein (double strande 29.0 1E+02 0.0034 22.1 5.2 15 93-107 31-45 (77)
385 1p4x_A Staphylococcal accessor 29.0 1.1E+02 0.0039 26.7 6.5 122 59-197 49-209 (250)
386 3klo_A Transcriptional regulat 28.9 50 0.0017 27.1 4.0 48 60-107 174-221 (225)
387 1b0n_A Protein (SINR protein); 28.8 85 0.0029 22.8 4.9 42 60-107 14-58 (111)
388 2b0l_A GTP-sensing transcripti 28.8 41 0.0014 25.6 3.1 25 94-118 44-69 (102)
389 1u8b_A ADA polyprotein; protei 28.7 55 0.0019 25.2 4.0 27 155-181 91-117 (133)
390 3mlf_A Transcriptional regulat 28.7 1E+02 0.0034 23.2 5.4 42 60-107 36-79 (111)
391 3f8m_A GNTR-family protein tra 28.7 76 0.0026 27.5 5.3 56 75-134 14-74 (248)
392 3f8m_A GNTR-family protein tra 28.5 55 0.0019 28.4 4.3 35 155-194 33-68 (248)
393 3op9_A PLI0006 protein; struct 28.4 1E+02 0.0034 22.8 5.3 41 61-107 23-65 (114)
394 1ylf_A RRF2 family protein; st 28.3 75 0.0026 25.3 4.8 40 49-90 20-59 (149)
395 3lwj_A Putative TETR-family tr 28.3 74 0.0025 24.8 4.8 47 142-189 17-64 (202)
396 1eto_A FIS, factor for inversi 28.3 1.1E+02 0.0037 23.2 5.5 26 156-181 70-95 (98)
397 3f1b_A TETR-like transcription 28.2 71 0.0024 24.8 4.6 48 142-189 19-66 (203)
398 3k0l_A Repressor protein; heli 28.2 68 0.0023 25.1 4.5 36 156-196 59-94 (162)
399 3i4p_A Transcriptional regulat 28.0 92 0.0031 25.0 5.4 36 82-117 6-43 (162)
400 2qwt_A Transcriptional regulat 27.9 61 0.0021 25.7 4.2 37 153-189 28-64 (196)
401 1vz0_A PARB, chromosome partit 27.9 81 0.0028 27.4 5.3 41 136-180 117-157 (230)
402 2v57_A TETR family transcripti 27.9 42 0.0014 26.1 3.2 34 156-189 31-64 (190)
403 2oqg_A Possible transcriptiona 27.8 64 0.0022 23.7 4.1 34 156-194 33-66 (114)
404 2wv0_A YVOA, HTH-type transcri 27.7 59 0.002 28.1 4.4 29 155-183 31-60 (243)
405 2fu4_A Ferric uptake regulatio 27.6 87 0.003 21.9 4.6 35 156-195 32-71 (83)
406 3e7l_A Transcriptional regulat 27.6 57 0.0019 22.3 3.5 24 158-181 33-56 (63)
407 3mky_B Protein SOPB; partition 27.5 75 0.0026 27.4 4.9 37 142-178 27-63 (189)
408 3bwg_A Uncharacterized HTH-typ 27.4 60 0.0021 27.9 4.3 29 155-183 26-55 (239)
409 3eet_A Putative GNTR-family tr 27.3 1E+02 0.0034 27.2 5.9 56 74-132 28-90 (272)
410 3szp_A Transcriptional regulat 27.2 71 0.0024 26.3 4.6 55 61-120 16-76 (291)
411 3ihu_A Transcriptional regulat 27.2 50 0.0017 27.7 3.7 36 155-195 37-72 (222)
412 1p4w_A RCSB; solution structur 27.2 66 0.0022 24.2 4.0 43 135-183 33-75 (99)
413 1d5y_A ROB transcription facto 27.2 2.9E+02 0.0099 23.4 9.0 52 58-112 17-87 (292)
414 3vp5_A Transcriptional regulat 27.0 71 0.0024 25.3 4.5 47 141-188 16-63 (189)
415 3edp_A LIN2111 protein; APC883 27.0 1.1E+02 0.0037 26.3 5.9 58 75-135 9-73 (236)
416 4ell_A Retinoblastoma-associat 27.0 2.3E+02 0.0078 27.2 8.6 66 96-168 286-353 (411)
417 2p8t_A Hypothetical protein PH 27.0 73 0.0025 27.6 4.7 36 155-195 28-63 (200)
418 3bdn_A Lambda repressor; repre 26.7 55 0.0019 27.5 3.9 29 152-180 25-53 (236)
419 2v7f_A RPS19, RPS19E SSU ribos 26.6 55 0.0019 26.9 3.8 43 75-118 50-107 (150)
420 3g5g_A Regulatory protein; tra 26.5 1.7E+02 0.0057 21.5 6.2 43 59-107 40-84 (99)
421 1yio_A Response regulatory pro 26.3 88 0.003 24.9 5.0 45 61-105 158-202 (208)
422 4ev0_A Transcription regulator 26.3 48 0.0016 26.7 3.3 47 41-87 141-190 (216)
423 3col_A Putative transcription 26.2 40 0.0014 26.1 2.8 50 140-189 13-62 (196)
424 3dcf_A Transcriptional regulat 26.2 80 0.0027 24.8 4.6 48 141-189 35-83 (218)
425 2esn_A Probable transcriptiona 26.0 73 0.0025 26.9 4.6 56 62-122 26-87 (310)
426 3h5t_A Transcriptional regulat 26.0 41 0.0014 29.9 3.1 26 155-180 7-32 (366)
427 3g7d_A PHPD; non heme Fe(II) d 26.0 48 0.0016 31.6 3.5 36 143-178 229-264 (443)
428 2cpg_A REPA protein, transcrip 25.8 36 0.0012 21.4 2.0 24 2-26 16-39 (45)
429 1use_A VAsp, vasodilator-stimu 25.8 40 0.0014 22.7 2.2 18 240-257 5-22 (45)
430 3knw_A Putative transcriptiona 25.7 87 0.003 24.6 4.8 49 141-189 18-66 (212)
431 3bd1_A CRO protein; transcript 25.6 1.6E+02 0.0056 20.1 6.1 41 62-107 13-55 (79)
432 1x57_A Endothelial differentia 25.6 1.3E+02 0.0044 21.2 5.3 43 59-107 25-69 (91)
433 3r0a_A Putative transcriptiona 25.5 1.1E+02 0.0037 23.5 5.1 42 62-107 13-56 (123)
434 3eet_A Putative GNTR-family tr 25.4 66 0.0023 28.4 4.3 36 155-195 50-86 (272)
435 2k9m_A RNA polymerase sigma fa 25.4 30 0.001 27.8 1.9 23 95-117 41-64 (130)
436 1r1u_A CZRA, repressor protein 25.3 82 0.0028 23.2 4.3 35 156-195 38-72 (106)
437 2hs5_A Putative transcriptiona 25.2 57 0.0019 28.0 3.7 36 155-195 49-84 (239)
438 3dew_A Transcriptional regulat 25.1 86 0.0029 24.2 4.6 33 157-189 28-60 (206)
439 3qp6_A CVIR transcriptional re 25.1 51 0.0017 28.9 3.5 46 60-105 212-257 (265)
440 3ppb_A Putative TETR family tr 25.0 90 0.0031 24.0 4.6 48 140-188 12-60 (195)
441 1pb6_A Hypothetical transcript 24.9 92 0.0032 24.4 4.8 48 142-189 23-70 (212)
442 3k2z_A LEXA repressor; winged 24.9 1E+02 0.0034 25.5 5.2 31 93-125 24-54 (196)
443 3t72_q RNA polymerase sigma fa 24.8 66 0.0022 24.4 3.6 26 156-181 38-63 (99)
444 1qpz_A PURA, protein (purine n 24.8 50 0.0017 29.0 3.4 23 158-180 1-23 (340)
445 3bru_A Regulatory protein, TET 24.7 83 0.0028 25.0 4.5 47 142-189 35-82 (222)
446 1z7u_A Hypothetical protein EF 24.5 89 0.003 23.4 4.4 35 156-195 34-69 (112)
447 1uxc_A FRUR (1-57), fructose r 24.5 69 0.0024 22.4 3.4 21 62-82 2-22 (65)
448 1r7j_A Conserved hypothetical 24.3 1.2E+02 0.004 22.6 4.9 26 158-183 21-46 (95)
449 2jj7_A Hemolysin II regulatory 24.3 50 0.0017 25.6 3.0 32 158-189 28-59 (186)
450 3fxq_A LYSR type regulator of 24.3 82 0.0028 26.6 4.6 32 61-92 17-48 (305)
451 3qwg_A ESX-1 secretion-associa 24.2 1.3E+02 0.0045 23.4 5.5 44 58-107 22-73 (123)
452 3zua_A CLD, alpha-hemolysin tr 24.1 78 0.0027 24.6 4.1 29 45-73 14-42 (142)
453 2rek_A Putative TETR-family tr 24.1 61 0.0021 25.5 3.5 33 157-189 35-67 (199)
454 1qjt_A EH1, epidermal growth f 23.8 1.3E+02 0.0046 21.9 5.2 56 2-65 32-87 (99)
455 2xvc_A ESCRT-III, SSO0910; cel 23.8 81 0.0028 22.4 3.6 32 55-86 20-51 (59)
456 2bv6_A MGRA, HTH-type transcri 23.7 38 0.0013 25.7 2.1 35 156-195 50-84 (142)
457 2zb9_A Putative transcriptiona 23.7 71 0.0024 25.4 3.9 34 156-189 42-75 (214)
458 2elh_A CG11849-PA, LD40883P; s 23.7 89 0.0031 22.5 4.1 26 158-183 39-64 (87)
459 1q1h_A TFE, transcription fact 23.7 83 0.0028 23.2 4.0 29 58-86 31-59 (110)
460 2h09_A Transcriptional regulat 23.7 87 0.003 24.4 4.3 42 76-117 37-79 (155)
461 1pdn_C Protein (PRD paired); p 23.6 93 0.0032 22.8 4.3 27 157-183 33-59 (128)
462 3clo_A Transcriptional regulat 23.5 1.1E+02 0.0037 26.3 5.3 46 60-105 212-257 (258)
463 2di3_A Bacterial regulatory pr 23.2 82 0.0028 26.7 4.4 35 155-194 25-60 (239)
464 2qq9_A Diphtheria toxin repres 23.2 1.3E+02 0.0043 25.6 5.6 37 146-183 14-50 (226)
465 3c2b_A Transcriptional regulat 23.1 97 0.0033 24.6 4.6 34 156-189 34-67 (221)
466 3ivp_A Putative transposon-rel 23.0 1.5E+02 0.005 22.3 5.5 42 60-107 25-68 (126)
467 2v79_A DNA replication protein 23.0 1.4E+02 0.0049 23.7 5.5 28 156-183 50-77 (135)
468 3pqk_A Biofilm growth-associat 22.8 97 0.0033 22.5 4.2 35 156-195 35-69 (102)
469 1okr_A MECI, methicillin resis 22.8 97 0.0033 23.0 4.3 51 136-195 7-61 (123)
470 1h72_C HK, homoserine kinase; 22.7 1.2E+02 0.0041 26.2 5.4 63 77-167 60-122 (296)
471 1t6s_A Conserved hypothetical 22.6 98 0.0034 25.8 4.6 37 145-185 14-52 (162)
472 3kjx_A Transcriptional regulat 22.5 47 0.0016 29.2 2.7 26 155-180 8-33 (344)
473 3h5o_A Transcriptional regulat 22.5 18 0.00063 31.8 0.0 26 155-180 2-27 (339)
474 2eby_A Putative HTH-type trans 22.4 1.2E+02 0.0042 22.2 4.8 43 59-107 23-67 (113)
475 3kz9_A SMCR; transcriptional r 22.4 95 0.0032 24.0 4.3 47 142-189 22-69 (206)
476 2q24_A Putative TETR family tr 22.3 68 0.0023 25.2 3.4 36 154-189 31-66 (194)
477 3r1f_A ESX-1 secretion-associa 22.3 1.5E+02 0.005 23.5 5.4 44 58-107 24-75 (135)
478 3cwr_A Transcriptional regulat 22.1 81 0.0028 24.5 3.9 48 142-189 22-69 (208)
479 1ntc_A Protein (nitrogen regul 22.1 66 0.0023 23.6 3.1 23 159-181 66-88 (91)
480 3p7n_A Sensor histidine kinase 21.8 1.3E+02 0.0046 24.7 5.4 46 60-105 213-258 (258)
481 1or7_A Sigma-24, RNA polymeras 21.7 1.1E+02 0.0037 24.3 4.6 29 156-184 155-183 (194)
482 1b9m_A Protein (mode); DNA-bin 21.7 98 0.0033 26.4 4.6 30 62-91 36-65 (265)
483 1xd7_A YWNA; structural genomi 21.6 1.9E+02 0.0064 22.7 6.0 50 140-196 8-57 (145)
484 3ke2_A Uncharacterized protein 21.4 92 0.0031 25.0 3.9 33 58-92 32-64 (117)
485 2jn6_A Protein CGL2762, transp 21.2 92 0.0032 22.5 3.7 26 157-182 23-48 (97)
486 2f2e_A PA1607; transcription f 21.1 1.5E+02 0.0051 23.5 5.3 35 156-195 36-70 (146)
487 3lhq_A Acrab operon repressor 21.0 1.2E+02 0.0042 23.6 4.8 34 156-189 33-66 (220)
488 3dpj_A Transcription regulator 21.0 1.3E+02 0.0043 23.3 4.8 34 156-189 27-60 (194)
489 3bni_A Putative TETR-family tr 20.8 1.2E+02 0.0041 24.7 4.8 48 142-189 48-95 (229)
490 1r1t_A Transcriptional repress 20.7 2E+02 0.0068 22.0 5.8 40 147-191 49-88 (122)
491 1g2h_A Transcriptional regulat 20.7 66 0.0023 21.9 2.7 23 159-181 35-57 (61)
492 2rae_A Transcriptional regulat 20.6 79 0.0027 24.9 3.5 51 139-189 19-69 (207)
493 2v79_A DNA replication protein 20.6 2.1E+02 0.0071 22.7 6.0 32 55-86 45-77 (135)
494 1on2_A Transcriptional regulat 20.6 1.1E+02 0.0036 23.5 4.2 15 93-107 22-36 (142)
495 2v8p_A 4-diphosphocytidyl-2-C- 20.4 1.6E+02 0.0055 25.4 5.8 63 77-167 65-127 (271)
496 2fjr_A Repressor protein CI; g 20.3 1.3E+02 0.0044 24.2 4.8 40 62-107 22-62 (189)
497 3b73_A PHIH1 repressor-like pr 20.3 76 0.0026 24.7 3.2 34 157-195 27-62 (111)
498 1hsj_A Fusion protein consisti 20.2 2E+02 0.0067 26.6 6.7 55 135-196 400-454 (487)
499 3vk0_A NHTF, transcriptional r 20.2 1.3E+02 0.0043 22.4 4.5 41 61-107 35-77 (114)
500 2lfw_A PHYR sigma-like domain; 20.1 1E+02 0.0036 24.2 4.1 29 155-183 107-135 (157)
No 1
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=100.00 E-value=5.5e-33 Score=242.49 Aligned_cols=169 Identities=16% Similarity=0.184 Sum_probs=159.1
Q ss_pred cHHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHH
Q 023151 2 DLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSF 81 (286)
Q Consensus 2 ei~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~y 81 (286)
+|.+++.+||||+ .|++.|.+|||++..+ ++++|++.+++++||||+|||..|+|+++++++.++|++++++.++|
T Consensus 15 ~I~~~~~~L~L~~--~v~~~A~~l~~~~~~~--~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~~i~~~~ 90 (200)
T 1ais_B 15 ELDRITAQLKLPR--HVEEEAARLYREAVRK--GLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSY 90 (200)
T ss_dssp HHHHHHHHHTCCH--HHHHHHHHHHHHHHTT--TTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCH--HHHHHHHHHHHHHHhC--CCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 5899999999995 8999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCC-------cHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHh
Q 023151 82 NSLQNSIGFKNEL-------DIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKK 153 (286)
Q Consensus 82 r~l~~~LgL~~~~-------~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~ 153 (286)
+.|.+.||++.++ +|++||+.||++. +.+.|.+|++.+.+. ++..|+ +|.++||||+|+||+.
T Consensus 91 ~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~---~~~~gr------~P~~iAaAaly~A~~~ 161 (200)
T 1ais_B 91 RFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAIEILDEAYKR---GLTSGK------SPAGLVAAALYIASLL 161 (200)
T ss_dssp HHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHT---TCCTTS------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc---CcccCC------CHHHHHHHHHHHHHHH
Confidence 9999999987532 7999999999998 999999999998876 345677 6999999999999999
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
+|.++|+++|++++||+++||+++|++|.+
T Consensus 162 ~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~ 191 (200)
T 1ais_B 162 EGEKRTQREVAEVARVTEVTVRNRYKELVE 191 (200)
T ss_dssp TTCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999965
No 2
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=100.00 E-value=3.6e-34 Score=272.23 Aligned_cols=175 Identities=14% Similarity=0.134 Sum_probs=81.1
Q ss_pred cHHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHH
Q 023151 2 DLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSF 81 (286)
Q Consensus 2 ei~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~y 81 (286)
+|++|+.+||||+ .|+++|.+|||++..+ ++++|++.++++|||||+|||..++|+++.||+.+++++++++.++|
T Consensus 132 ~I~~~~~~L~Lp~--~v~d~A~~lyk~a~~~--~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~~keigr~~ 207 (345)
T 4bbr_M 132 KITMLCDAAELPK--IVKDCAKEAYKLCHDE--KTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTL 207 (345)
T ss_dssp HHHHHHHHTTCCH--HHHHHHHHHHHHHTTC--TTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHcCCCH--HHHHHHHHHHHHHHhc--CCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCCHHHHHHHH
Confidence 6899999999996 7999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC------------CC-----CcHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHH
Q 023151 82 NSLQNSIGFK------------NE-----LDIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFT 143 (286)
Q Consensus 82 r~l~~~LgL~------------~~-----~~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~A 143 (286)
+.|.++||+. .+ .+|++||+.||++. +.+.|.+|++.+.+. ++..|+ +|.++|
T Consensus 208 k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~---~i~~GR------~P~~IA 278 (345)
T 4bbr_M 208 NIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEI---KEIAGK------SPITIA 278 (345)
T ss_dssp HHHHHCC-------------------------------------------------------------------------
T ss_pred HHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc---ccccCC------ChHHHH
Confidence 9999999984 22 27999999999999 999999999999876 456898 699999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 144 AVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 144 AAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
|||||+||++++.++||++|++++|||++|||++|++|.+.-..++
T Consensus 279 AAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~ 324 (345)
T 4bbr_M 279 VVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLV 324 (345)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999977554444
No 3
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.97 E-value=6.2e-29 Score=218.17 Aligned_cols=171 Identities=15% Similarity=0.179 Sum_probs=159.8
Q ss_pred cHHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHH
Q 023151 2 DLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSF 81 (286)
Q Consensus 2 ei~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~y 81 (286)
.|.+++.+||||. .|++.|..||+++..+ +.++|++...++++|||+|||..++|+++++++.+++++++++.++|
T Consensus 11 ~I~~~~~~L~L~~--~v~~~A~~~~~r~~~~--~~~~~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~~~~~~i~~~~ 86 (207)
T 1c9b_A 11 EITTMADRINLPR--NIVDRTNNLFKQVYEQ--KSLKGRANDAIASACLYIACRQEGVPRTFKEICAVSRISKKEIGRCF 86 (207)
T ss_dssp HHHHHHHHTTCCH--HHHHHHHHHHHHHHHH--TCSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSSSCHHHHHHHH
T ss_pred HHHHHHHHcCCCH--HHHHHHHHHHHHHHhc--CCcCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 4889999999995 7999999999999999 88999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCC-----cHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCC
Q 023151 82 NSLQNSIGFKNEL-----DIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHK 155 (286)
Q Consensus 82 r~l~~~LgL~~~~-----~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k 155 (286)
+.|.+.||.+.++ +|++++..||++. +.+.|..+++...+. ++..|+ +|.++||||+|+||+.+|
T Consensus 87 ~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~---~l~~g~------~P~~IAaAaiylA~~~~~ 157 (207)
T 1c9b_A 87 KLILKALETSVDLITTGDFMSRFCSNLCLPKQVQMAATHIARKAVEL---DLVPGR------SPISVAAAAIYMASQASA 157 (207)
T ss_dssp HHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT---TCSTTC------CHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHCCCcCcCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CccCCC------ChHHHHHHHHHHHHHHHC
Confidence 9999999988754 6999999999998 999999999987764 455676 699999999999999999
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLC 185 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c 185 (286)
.++++++|++++||+++||+++|++|.+..
T Consensus 158 ~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l 187 (207)
T 1c9b_A 158 EKRTQKEIGDIAGVADVTIRQSYRLIYPRA 187 (207)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHGGGH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997643
No 4
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.2e-31 Score=252.44 Aligned_cols=171 Identities=14% Similarity=0.122 Sum_probs=81.8
Q ss_pred cHHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHH
Q 023151 2 DLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSF 81 (286)
Q Consensus 2 ei~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~y 81 (286)
+|++|+.+|+||+ .|+++|.+|||++..+ ++++|++.+.+++||||+|||..++|++++||+.+++++++++.++|
T Consensus 132 ~I~~~~~~L~Lp~--~v~d~A~~lyk~~~~~--~~~kgr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~v~~keIgr~~ 207 (345)
T 3k7a_M 132 KITMLCDAAELPK--IVKDCAKEAYKLCHDE--KTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTL 207 (345)
T ss_dssp HHHHHHHHTTCCH--HHHTHHHHHHHHHSSS--CSSCCCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSSCCSHHHHHHH
T ss_pred HHHHHHHHcCCCH--HHHHHHHHHHHHHHhc--CcccCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHCCCHHHHHHHH
Confidence 5899999999996 7999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC------------CCCCC-----cHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHH
Q 023151 82 NSLQNSIG------------FKNEL-----DIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFT 143 (286)
Q Consensus 82 r~l~~~Lg------------L~~~~-----~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~A 143 (286)
+.|.+.|+ ++.++ +|++||+.||++. +.+.|.+|++...+. ++..|+ +|.++|
T Consensus 208 ~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~---~l~~Gr------~P~~IA 278 (345)
T 3k7a_M 208 NIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEI---KEIAGK------SPITIA 278 (345)
T ss_dssp HHHHHHHTCC----------------------------------------------------------------------
T ss_pred HHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh---chhcCC------CHHHHH
Confidence 99999999 54432 7999999999998 999999999988766 445788 599999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhh
Q 023151 144 AVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLC 185 (286)
Q Consensus 144 AAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c 185 (286)
|||||+||++++.++||++|++++||+++||+++|++|.+.-
T Consensus 279 aAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 279 VVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997644
No 5
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=166.38 Aligned_cols=87 Identities=31% Similarity=0.610 Sum_probs=82.2
Q ss_pred CCcHHHHHHHhCCcchHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHH
Q 023151 93 ELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSET 172 (286)
Q Consensus 93 ~~~I~~ia~qlg~s~v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~v 172 (286)
.++|++||+||||+++.+.|++||++|+ .+|+.+++.++||++|+|+|||||+||+++|++|||.||+++||+++.
T Consensus 3 ~l~v~dLcVqfgc~e~~~~a~~lL~~Yk----~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~ 78 (95)
T 3m03_A 3 NIGIRDLAVQFSCIEAVNMASKILKSYE----SSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKA 78 (95)
T ss_dssp CCCHHHHHHHHTCGGGHHHHHHHHHHHH----TTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHH
T ss_pred cCCHHHHHHHhCCHHHHHHHHHHHHHHH----HHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHHHCCCHH
Confidence 4689999999999999999999999888 356788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 023151 173 EFASVSTTMKD 183 (286)
Q Consensus 173 t~rnr~ke~~~ 183 (286)
+|++++++|+.
T Consensus 79 ~f~~l~~~~e~ 89 (95)
T 3m03_A 79 IFDRLCKQLEK 89 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999965
No 6
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=99.78 E-value=5e-18 Score=151.77 Aligned_cols=167 Identities=8% Similarity=-0.025 Sum_probs=144.5
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCC-cchHHHHHHHHHHHHhhCCCCCCHHHHHHHh--------CCC
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIG-VGEVCKAVICLELAASRFDVIFDRKTAIKLS--------GMS 73 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~G-rs~~~~aaacLylAcr~~~iprd~~e~~k~s--------g~~ 73 (286)
|.+++.+|+||. .++..|..||++...+ +.+.| .+...++++|||+||+..+.|+.+++++.++ ..+
T Consensus 35 i~~v~~~l~L~~--~t~~~A~~~~~Rf~~~--~~~~~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~~~~~~ 110 (235)
T 1zp2_A 35 VQTFGDRLRLRQ--RVLATAIVLLRRYMLK--KNEEKGFSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSLKVKLS 110 (235)
T ss_dssp HHHHHHHTTCCH--HHHHHHHHHHHHHHHH--CCSCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCCSSCCC
T ss_pred HHHHHHHcCCCH--HHHHHHHHHHHHHHHh--cccccccCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccchhhcc
Confidence 778999999995 7999999999999998 66777 9999999999999999999999999999987 579
Q ss_pred HHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHH
Q 023151 74 EKAYNRSFNSLQNSIGFKNEL-----DIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAF 147 (286)
Q Consensus 74 ~k~y~~~yr~l~~~LgL~~~~-----~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAl 147 (286)
++++.++.+.|.+.||.+..+ ++.+++..+|++. +.+.|..+++... ...+. +.+.|+++||||+
T Consensus 111 ~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~---~~~~~------l~~~Ps~IAaAai 181 (235)
T 1zp2_A 111 RSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQKQLEFAWSIVNDSY---ASSLC------LMAHPHQLAYAAL 181 (235)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCHHHHHHHHHHHHHHT---TTTGG------GTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---cCCch------hccCHHHHHHHHH
Confidence 999999999999999987754 7999999999988 9999999998643 33222 3357999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 148 YLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 148 Y~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
|+|++.++.+.+. ......|+++.++++++++|.+
T Consensus 182 ~lA~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~i~~ 216 (235)
T 1zp2_A 182 LISCCNDENTIPK-LLDLIKSTDAFKVILCVQRIIS 216 (235)
T ss_dssp HHHHTSCTTHHHH-HHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCC-CcchhhcCCHHHHHHHHHHHHH
Confidence 9999999876542 3344459999999999999976
No 7
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=99.67 E-value=2.7e-15 Score=135.36 Aligned_cols=169 Identities=12% Similarity=0.063 Sum_probs=142.2
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCC----------
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGM---------- 72 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~---------- 72 (286)
|.+++.+|+||. .++..|..||++...+ ..+.+.....++++|||+||+..++|+.+++++.++..
T Consensus 38 i~~v~~~l~l~~--~t~~~A~~~~dRf~~~--~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~~~~~~~~~~~~~ 113 (257)
T 2ivx_A 38 IQEMGQRLNVSQ--LTINTAIVYMHRFYMH--HSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVAHACLHPLEPLLD 113 (257)
T ss_dssp HHHHHHHTTCCH--HHHHHHHHHHHHHTTT--SCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCCCC
T ss_pred HHHHHHHcCCcH--HHHHHHHHHHHHHHhh--CChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHHHHHhccCCCCCC
Confidence 678999999995 7999999999999998 67889999999999999999999999999999987732
Q ss_pred -C-------HHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCC
Q 023151 73 -S-------EKAYNRSFNSLQNSIGFKNEL-----DIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFS 138 (286)
Q Consensus 73 -~-------~k~y~~~yr~l~~~LgL~~~~-----~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~ 138 (286)
. ++++.++.+.|.+.||.+..+ ++.+++..++.+. +...|..+++..-- ... ..+.|.
T Consensus 114 ~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~--~~~------~~l~~~ 185 (257)
T 2ivx_A 114 TKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASKDLAQTSYFMATNSLH--LTT------FCLQYK 185 (257)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH--HCC------GGGTSC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhh--ccc------HHHcCC
Confidence 2 788999999999999987654 7999999999988 88899888875321 111 123468
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHH----HHH--HhCCCHHHHHHHHHHHHH
Q 023151 139 RPVFTAVAFYLCAKKHKLKVDKLK----LIE--VCGTSETEFASVSTTMKD 183 (286)
Q Consensus 139 pp~~AAAAlY~A~~~~k~kvtQ~k----la~--~sgvt~vt~rnr~ke~~~ 183 (286)
|.++||||+|+|++.+|.++++.. ..+ .+|+++.++++++++|.+
T Consensus 186 Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~ 236 (257)
T 2ivx_A 186 PTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQ 236 (257)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998877532 444 348999999999999976
No 8
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=99.65 E-value=9.5e-15 Score=134.61 Aligned_cols=167 Identities=11% Similarity=0.075 Sum_probs=144.1
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCC-CHHHHHHHhC----------
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIF-DRKTAIKLSG---------- 71 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~ipr-d~~e~~k~sg---------- 71 (286)
|.+++.+|+||. .++..|..||++...+ ..+.+.....++++|||+||+..++|+ ++++++.++.
T Consensus 50 I~~v~~~l~L~~--~t~~tA~~~~~RF~~~--~s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~~~~ 125 (285)
T 3rgf_B 50 IQALGEHLKLRQ--QVIATATVYFKRFYAR--YSLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRFSYA 125 (285)
T ss_dssp HHHHHHHTTCCH--HHHHHHHHHHHHHHHH--SCTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHhCCCH--HHHHHHHHHHHHHHHh--CCchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHccccccc
Confidence 678999999995 7999999999999998 778999999999999999999999998 6888887652
Q ss_pred ------CCHHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCCh
Q 023151 72 ------MSEKAYNRSFNSLQNSIGFKNEL-----DIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSR 139 (286)
Q Consensus 72 ------~~~k~y~~~yr~l~~~LgL~~~~-----~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~p 139 (286)
..++++.++.+.|.+.||.+..+ ++.+++..+|.+. +.+.|..+++.. +.+.+ .+-|.|
T Consensus 126 ~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~~~~~~~A~~~l~~s---l~t~~------~l~~~P 196 (285)
T 3rgf_B 126 FPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQEDMLLPLAWRIVNDT---YRTDL------CLLYPP 196 (285)
T ss_dssp CCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCHHHHHHHHHHHHHHH---TTSSH------HHHSCH
T ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCCHHHHHHHHHHHHHH---HccCh------hhccCH
Confidence 46799999999999999987653 7999999999988 999999999863 23222 233579
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023151 140 PVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDL 184 (286)
Q Consensus 140 p~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~ 184 (286)
..+||||+|+|++.++... ..--+..|+++.++...+.+|.++
T Consensus 197 s~IAaAaiylA~~~~~~~~--~~W~~~~~~~~~~l~~~~~~il~l 239 (285)
T 3rgf_B 197 FMIALACLHVACVVQQKDA--RQWFAELSVDMEKILEIIRVILKL 239 (285)
T ss_dssp HHHHHHHHHHHHHHTTCCC--HHHHHTSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCh--hhHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999765 467788999999999999999763
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.65 E-value=2.3e-15 Score=135.48 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=140.2
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCC----------
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGM---------- 72 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~---------- 72 (286)
|.+++.+|+||. .++..|..||++...+ ..+.+.....++++|||+||+..+.|+.+++++.+++.
T Consensus 48 i~~v~~~l~l~~--~t~~~A~~~~dRf~~~--~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~~~~~~~~~~~~ 123 (258)
T 2i53_A 48 IFDVGTRLGLHY--DTLATGIIYFHRFYMF--HSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQF 123 (258)
T ss_dssp HHHHHHHTTCCH--HHHHHHHHHHHHHTTT--SCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHSCHHHHGGG
T ss_pred HHHHHHHcCCCh--HHHHHHHHHHHHHHHh--CChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHHHHhchhhhhhh
Confidence 678999999995 7999999999999998 66889999999999999999999999999999986541
Q ss_pred ---CHHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHhCCcc-----hHHHHHHHHHHHHHhhhhccccccccCCCCCh
Q 023151 73 ---SEKAYNRSFNSLQNSIGFKNEL-----DIRELGIRFGCIR-----LIPLVQKGLSLFKDRFTAALPASRKTSADFSR 139 (286)
Q Consensus 73 ---~~k~y~~~yr~l~~~LgL~~~~-----~I~~ia~qlg~s~-----v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~p 139 (286)
.++++.++.+.|.+.||.+..+ ++.+++..++.+. +...|..+++... ... ..+.|.|
T Consensus 124 ~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~---~~~------~~l~~~P 194 (258)
T 2i53_A 124 GDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSL---CTT------LSLQWEP 194 (258)
T ss_dssp CSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHT---TTT------GGGTSCH
T ss_pred hhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH---cCC------chhccCh
Confidence 3678999999999999987754 6999999999874 6777888877532 221 2344689
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHH-------H--HhCCCHHHHHHHHHHHHH
Q 023151 140 PVFTAVAFYLCAKKHKLKVDKLKLI-------E--VCGTSETEFASVSTTMKD 183 (286)
Q Consensus 140 p~~AAAAlY~A~~~~k~kvtQ~kla-------~--~sgvt~vt~rnr~ke~~~ 183 (286)
.++||||+|+|++.+|.++++.... + .+|+++.+++++|++|.+
T Consensus 195 s~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ 247 (258)
T 2i53_A 195 EIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILD 247 (258)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHhccCCCHHHHHHHHHHHHH
Confidence 9999999999999999987764321 2 259999999999999965
No 10
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=99.61 E-value=4.5e-14 Score=128.70 Aligned_cols=171 Identities=8% Similarity=-0.029 Sum_probs=139.7
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCC-CCCHHHHHHHhC--CCHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDV-IFDRKTAIKLSG--MSEKAYNR 79 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~i-prd~~e~~k~sg--~~~k~y~~ 79 (286)
|.++..+++++. .++-.|-.|+.+...+ ..+.+.....++++||++||+..++ |+++++++.+++ .+++++.+
T Consensus 64 l~~v~~~~~l~~--~tl~lAv~~lDRfls~--~~v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~ 139 (271)
T 2w96_A 64 MLEVCEEQKCEE--EVFPLAMNYLDRFLSL--EPVKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQ 139 (271)
T ss_dssp HHHHHHHTTCCT--THHHHHHHHHHHHHTT--SCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHH
T ss_pred HHHHHHHHCCch--hHHHHHHHHHHHhCCc--CCcCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHH
Confidence 457888999986 6999999999999998 3467788999999999999999998 999999999875 69999999
Q ss_pred HHHHHHHHhCCCCCC-----cHHHHHHHhCCcc-hH----HHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHH
Q 023151 80 SFNSLQNSIGFKNEL-----DIRELGIRFGCIR-LI----PLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYL 149 (286)
Q Consensus 80 ~yr~l~~~LgL~~~~-----~I~~ia~qlg~s~-v~----~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~ 149 (286)
+.+.|.+.||.+..+ ++.+|+..++++. .. +.|..+++..... . ..+.|.|.++||||+|+
T Consensus 140 mE~~IL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d-------~--~~~~~~PS~iAaAai~l 210 (271)
T 2w96_A 140 MELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEENKQIIRKHAQTFVALCATD-------V--KFISNPPSMVAAGSVVA 210 (271)
T ss_dssp HHHHHHHHTTTCCCCCCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTS-------T--HHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHhh-------h--hhhccCHHHHHHHHHHH
Confidence 999999999987754 6999999999886 42 3455565533211 1 11235799999999999
Q ss_pred HHHhCCC---------CCCHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 023151 150 CAKKHKL---------KVDKLKLIEVCGTSETEFASVSTTMKDLCH 186 (286)
Q Consensus 150 A~~~~k~---------kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~ 186 (286)
|+..++. ...+..|+.++|++++++++.+++|.++-.
T Consensus 211 A~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c~~~i~~l~~ 256 (271)
T 2w96_A 211 AVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRACQEQIEALLE 256 (271)
T ss_dssp HHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 9987764 124789999999999999999999977433
No 11
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=99.61 E-value=1.2e-14 Score=132.55 Aligned_cols=171 Identities=12% Similarity=-0.026 Sum_probs=149.2
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCC-CCCHHHHHHHhC--CCHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDV-IFDRKTAIKLSG--MSEKAYNR 79 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~i-prd~~e~~k~sg--~~~k~y~~ 79 (286)
|.++..+++|+. .++-.|..|+.+...+ ..+.+.....++++||++||+..++ |+++++++.+++ .+++++.+
T Consensus 45 l~~v~~~~~l~~--~tl~lAv~~lDRfl~~--~~v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~ 120 (269)
T 2b9r_A 45 LVQVQMKFRLLQ--ETMYMTVSIIDRFMQN--NSVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQ 120 (269)
T ss_dssp HHHHHHHTTCCH--HHHHHHHHHHHHHHTT--SCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHH
T ss_pred HHHHHHHhCCCH--HHHHHHHHHHHHHhcC--CCCcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHH
Confidence 567889999995 7999999999999998 4578889999999999999999887 899999999985 69999999
Q ss_pred HHHHHHHHhCCCCCC-----cHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHh
Q 023151 80 SFNSLQNSIGFKNEL-----DIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKK 153 (286)
Q Consensus 80 ~yr~l~~~LgL~~~~-----~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~ 153 (286)
+.+.|.+.||.+..+ ++++++..++++. +...|..+++... . .+ ..+.|.|..+||||+|+|+..
T Consensus 121 mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl---~----~~--~~~~~~Ps~iAaAai~lA~~~ 191 (269)
T 2b9r_A 121 MEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTM---L----DY--DMVHFPPSQIAAGAFSLALKI 191 (269)
T ss_dssp HHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCHHHHHHHHHHHHHGG---G----CG--GGSSSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---h----hh--hhhcCCHHHHHHHHHHHHHHH
Confidence 999999999987653 7999999999888 8888888888522 1 11 234568999999999999999
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKDLCH 186 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~ 186 (286)
+|.+..+..+...+|+++.++++.++.|.++..
T Consensus 192 l~~~~w~~~l~~~tg~~~~~l~~~~~~l~~~~~ 224 (269)
T 2b9r_A 192 LDNGEWTPTLQHYLSYTEESLLPVMQHLAKNVV 224 (269)
T ss_dssp HTCCCSCTTHHHHSCCCSSTTTTHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999989999999999999999999999977543
No 12
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=99.58 E-value=6.9e-14 Score=126.76 Aligned_cols=172 Identities=10% Similarity=-0.004 Sum_probs=146.7
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCC-CCCHHHHHHHhC--CCHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDV-IFDRKTAIKLSG--MSEKAYNR 79 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~i-prd~~e~~k~sg--~~~k~y~~ 79 (286)
|-++..+++|+. .++-.|-.|+.+...+ ..+.......++++||++||+..++ |+++++++.+++ .+++++.+
T Consensus 46 l~~v~~~~~l~~--~tl~lAv~~lDRfls~--~~v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~ 121 (260)
T 2cch_B 46 LVEVGEEYKLQN--ETLHLAVNYIDRFLSS--MSVLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLR 121 (260)
T ss_dssp HHHHHHHTTCCH--HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHhCCCH--HHHHHHHHHHHHHhcc--CCCCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHH
Confidence 456889999995 7999999999999998 3456678899999999999999998 999999999985 79999999
Q ss_pred HHHHHHHHhCCCCCC-----cHHHHHHHhCCcc--hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHH
Q 023151 80 SFNSLQNSIGFKNEL-----DIRELGIRFGCIR--LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAK 152 (286)
Q Consensus 80 ~yr~l~~~LgL~~~~-----~I~~ia~qlg~s~--v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~ 152 (286)
+.+.|.+.||.+..+ ++.+++..++++. +...|..+++..--.+. ..+.|.|..+||||+|+|+.
T Consensus 122 mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~--------~~~~~~Ps~iAaAai~lA~~ 193 (260)
T 2cch_B 122 MEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDAD--------PYLKYLPSVIAGAAFHLALY 193 (260)
T ss_dssp HHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHH--------HHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHH--------HHhCCCHHHHHHHHHHHHHH
Confidence 999999999987653 6999999999875 88888888886321110 12335799999999999999
Q ss_pred hCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 023151 153 KHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCH 186 (286)
Q Consensus 153 ~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~ 186 (286)
.++.+..+..+...+|+++.+|++.++.|.+...
T Consensus 194 ~~~~~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~ 227 (260)
T 2cch_B 194 TVTGQSWPESLIRKTGYTLESLKPCLMDLHQTYL 227 (260)
T ss_dssp HHHSCCSCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HhCCCcchHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 9998889999999999999999999999987543
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=99.53 E-value=1.1e-14 Score=138.79 Aligned_cols=169 Identities=14% Similarity=0.072 Sum_probs=139.7
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhC-----------
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSG----------- 71 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg----------- 71 (286)
|.+++.+|+||. .++..|..||++...+ ..+.+.....++++|||+||+..++|+.+++++.++.
T Consensus 45 I~ev~~~l~L~~--~t~~tAv~~~dRFl~~--~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~~~~~~~~~~~~~ 120 (358)
T 2pk2_A 45 LQDMGQRLNVSQ--LTINTAIVYMHRFYMI--QSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVAHTCLHPQESLPD 120 (358)
T ss_dssp HHHHHTTTTCCH--HHHHHHHHHHHHHTTT--SCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTHHHHHCSSSCCCC
T ss_pred HHHHHHHcCCCH--HHHHHHHHHHHHHHhc--CCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcccccccc
Confidence 678999999995 7999999999999998 6688899999999999999999999999999987652
Q ss_pred C-------CHHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCC
Q 023151 72 M-------SEKAYNRSFNSLQNSIGFKNEL-----DIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFS 138 (286)
Q Consensus 72 ~-------~~k~y~~~yr~l~~~LgL~~~~-----~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~ 138 (286)
+ .++++.++.+.|.+.|+.+..+ +|.+|+..++.+. +...|..+++..-- .. ...+.|.
T Consensus 121 ~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~--~t------~l~l~y~ 192 (358)
T 2pk2_A 121 TRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASKDLAQTSYFMATNSLH--LT------TFSLQYT 192 (358)
T ss_dssp TTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCHHHHHHHHHHHHHHTT--TS------CGGGTSC
T ss_pred ccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--cC------cchhccC
Confidence 1 1566778999999999987653 7999999999987 88889888875220 11 1134568
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHH----HHHH--hCCCHHHHHHHHHHHHH
Q 023151 139 RPVFTAVAFYLCAKKHKLKVDKLK----LIEV--CGTSETEFASVSTTMKD 183 (286)
Q Consensus 139 pp~~AAAAlY~A~~~~k~kvtQ~k----la~~--sgvt~vt~rnr~ke~~~ 183 (286)
|..+||||||+|++.++.++++.. ..+. ++|++.++++++++|.+
T Consensus 193 Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il~ 243 (358)
T 2pk2_A 193 PPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQ 243 (358)
T ss_dssp HHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHHH
Confidence 999999999999999998877532 3333 48999999999999976
No 14
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.48 E-value=2e-13 Score=118.65 Aligned_cols=88 Identities=17% Similarity=0.204 Sum_probs=84.4
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFN 82 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr 82 (286)
|.|++++|||++ .|.+.|.+|++.+... ++..|++..++++||||+||+.+|.|++.+++++++|+++..+.++|+
T Consensus 112 i~r~~~~L~l~~--~v~~~A~~i~~~~~~~--~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~ 187 (200)
T 1ais_B 112 VNKFADELGLSE--KVRRRAIEILDEAYKR--GLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYK 187 (200)
T ss_dssp HHHHHHHHTCCH--HHHHHHHHHHHHHHHT--TCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCH--HHHHHHHHHHHHHHHc--CcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 789999999995 7999999999999997 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCC
Q 023151 83 SLQNSIGFKNEL 94 (286)
Q Consensus 83 ~l~~~LgL~~~~ 94 (286)
.|.+.||++.++
T Consensus 188 ~l~~~l~~~~~~ 199 (200)
T 1ais_B 188 ELVEKLKIKVPI 199 (200)
T ss_dssp HHHHHHTCCCCC
T ss_pred HHHHHcCCCCCC
Confidence 999999998765
No 15
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.48 E-value=9.9e-13 Score=123.39 Aligned_cols=168 Identities=10% Similarity=0.036 Sum_probs=133.6
Q ss_pred HHHHHHHhC--CCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCC-------
Q 023151 3 LSDIAKKLG--LSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMS------- 73 (286)
Q Consensus 3 i~ria~kLg--L~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~------- 73 (286)
|.+++.+|+ ||. .|+..|..||++...+ ..+.+.....++++|||+||+..++|+++++++.....+
T Consensus 64 I~ev~~~l~~~Lp~--~t~~tA~~~~~RF~~~--~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~p~~~~~~ 139 (323)
T 1jkw_A 64 LLEFCSVFKPAMPR--SVVGTACMYFKRFYLN--NSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRESPLGQEKA 139 (323)
T ss_dssp HHHHHHHCTTTCCH--HHHHHHHHHHHHHGGG--SCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSCHHHHHHH
T ss_pred HHHHHHHHcCCCCH--HHHHHHHHHHHHHhhh--CChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccChhhhHHH
Confidence 678999999 995 7999999999999998 678899999999999999999999999999998877655
Q ss_pred HHHHHHHHHHHHHHhCCCCCC-----cHHHHHHHh-------CCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChh
Q 023151 74 EKAYNRSFNSLQNSIGFKNEL-----DIRELGIRF-------GCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRP 140 (286)
Q Consensus 74 ~k~y~~~yr~l~~~LgL~~~~-----~I~~ia~ql-------g~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp 140 (286)
++.+.++.+.|.+.||.+..+ ++.+++..+ +.++ +...|..+++.. +.+.+ .+.|.|+
T Consensus 140 ~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~s---l~t~~------~l~~~Ps 210 (323)
T 1jkw_A 140 LEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRI---ALTDA------YLLYTPS 210 (323)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH---TTSTH------HHHSCHH
T ss_pred HHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH---HhccH------HHcCCHH
Confidence 688999999999999987654 588888765 3334 778888888853 33222 2335799
Q ss_pred HHHHHHHHHHHHhCCCCCCH--HHHHH--HhCCCHHHHHHHHHHHHH
Q 023151 141 VFTAVAFYLCAKKHKLKVDK--LKLIE--VCGTSETEFASVSTTMKD 183 (286)
Q Consensus 141 ~~AAAAlY~A~~~~k~kvtQ--~kla~--~sgvt~vt~rnr~ke~~~ 183 (286)
++||||+|+|++.+|.+++. .++.. .++.+...+...+.+|.+
T Consensus 211 ~IAaAai~lA~~~~~~~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~ 257 (323)
T 1jkw_A 211 QIALTAILSSASRAGITMESYLSESLMLKENRTCLSQLLDIMKSMRN 257 (323)
T ss_dssp HHHHHHHHHHHHHHSCCCTTHHHHHTTSCSSSCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHhccccccccHHHHHHHHHHHHH
Confidence 99999999999999998764 12222 145566666666766644
No 16
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=99.43 E-value=7.6e-12 Score=113.10 Aligned_cols=168 Identities=8% Similarity=0.031 Sum_probs=139.4
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCC-CCCHHHHHHHhC--CCHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDV-IFDRKTAIKLSG--MSEKAYNR 79 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~i-prd~~e~~k~sg--~~~k~y~~ 79 (286)
|-++..+++|+. .++-.|-.|+.+...+ ..+.+.....++++||++||+...+ |.++++++.+++ .+++++.+
T Consensus 58 l~ev~~~~~l~~--etl~lAv~~~DRfls~--~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~ 133 (257)
T 1g3n_C 58 MFSVCQEYNLEP--NVVALALNLLDRLLLI--KQVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELID 133 (257)
T ss_dssp HHHHHHHTTCCH--HHHHHHHHHHHHHTTT--CCCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHH
T ss_pred HHHHHHHhCCCc--cHHHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHH
Confidence 346788999985 7999999999999998 5678888999999999999998875 999999999975 69999999
Q ss_pred HHHHHHHHhCCCCCC-----cHHHHHHHhCCcc-h----HHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHH
Q 023151 80 SFNSLQNSIGFKNEL-----DIRELGIRFGCIR-L----IPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYL 149 (286)
Q Consensus 80 ~yr~l~~~LgL~~~~-----~I~~ia~qlg~s~-v----~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~ 149 (286)
+.+.|.+.||-+..+ ++.+++..++++. . ...|..+++..- .. ...+.|.|..+||||+|+
T Consensus 134 mE~~iL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l-------~d--~~~~~~~PS~iAaAai~l 204 (257)
T 1g3n_C 134 QEKELLEKLAWRTEAVLATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKAL-------VD--PLTGSLPASIISAAGCAL 204 (257)
T ss_dssp HHHHHHHHTTTCCCCCCHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHH-------TS--TTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH-------hC--cchhCcCHHHHHHHHHHH
Confidence 999999999987653 7999999999876 4 344555655322 11 123456899999999999
Q ss_pred HHHhCCC------CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 150 CAKKHKL------KVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 150 A~~~~k~------kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
|...++. ...+..|+..+|+++.++++.++.|.+
T Consensus 205 A~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~~~i~~ 244 (257)
T 1g3n_C 205 LVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAVEQILT 244 (257)
T ss_dssp HCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9998885 345789999999999999999999976
No 17
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=99.43 E-value=2e-11 Score=110.11 Aligned_cols=169 Identities=9% Similarity=-0.003 Sum_probs=138.4
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCC-CCCCHHHHHHHhC--CCHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFD-VIFDRKTAIKLSG--MSEKAYNR 79 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~-iprd~~e~~k~sg--~~~k~y~~ 79 (286)
|-++..+++|+. .++-.|-.|+.+...+ ..+.+.....++++||++||+... .|.++++++.+++ .+++++.+
T Consensus 59 l~~v~~~~~l~~--etl~lAv~~~DRfls~--~~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~ 134 (254)
T 2f2c_A 59 MHLLCESFELDK--SVFPLSVSILDRYLCK--KQGTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELIN 134 (254)
T ss_dssp HHHHHHHTTCCT--THHHHHHHHHHHHTTT--SCCCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHH
T ss_pred HHHHHHHHCCCc--hHHHHHHHHHHHHHcc--CCcCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHH
Confidence 346788999986 6999999999999998 567888999999999999999976 6999999988764 68999999
Q ss_pred HHHHHHHHhCCCCCC-----cHHHHHHHhCCcc-h----HHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHH
Q 023151 80 SFNSLQNSIGFKNEL-----DIRELGIRFGCIR-L----IPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYL 149 (286)
Q Consensus 80 ~yr~l~~~LgL~~~~-----~I~~ia~qlg~s~-v----~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~ 149 (286)
+.+.|.+.||-+..+ ++.+++..++.+. . ...|..+++.. +... ..+.|.|..+||||+|+
T Consensus 135 mE~~IL~~L~~~l~~~tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~-------l~d~--~~~~~~PS~iAaAai~l 205 (254)
T 2f2c_A 135 QEKDILEALKWDTEAVLATDFLIPLCNALKIPEDLWPQLYEAASTTICKA-------LIQP--NIALLSPGLICAGGLLT 205 (254)
T ss_dssp HHHHHHHHTTTCCCCCCGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHH-------TTSG--GGTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcCCCCCHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHH-------HcCc--chhccCHHHHHHHHHHH
Confidence 999999999976643 7999999999877 4 33455555421 1111 24567899999999999
Q ss_pred HHHhC-CCCCC----HHHHHHHhCCCHHHHHHHHHHHHHh
Q 023151 150 CAKKH-KLKVD----KLKLIEVCGTSETEFASVSTTMKDL 184 (286)
Q Consensus 150 A~~~~-k~kvt----Q~kla~~sgvt~vt~rnr~ke~~~~ 184 (286)
|...+ +.+.+ +..|...+|+++.++++.++.|.++
T Consensus 206 a~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i~~~ 245 (254)
T 2f2c_A 206 TIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQVSEA 245 (254)
T ss_dssp HHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99987 44455 8899999999999999999999763
No 18
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=99.35 E-value=2.3e-11 Score=111.91 Aligned_cols=165 Identities=10% Similarity=-0.017 Sum_probs=133.5
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCC-CCCHHHHHHHhC--CCHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDV-IFDRKTAIKLSG--MSEKAYNR 79 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~i-prd~~e~~k~sg--~~~k~y~~ 79 (286)
|.++..+++++. .++-.|-.|+.+...+. ..+.+.....++++||++||+..++ |.++++++.+++ .+++++.+
T Consensus 57 l~~v~~~~~l~~--~tl~lAv~~lDRfls~~-~~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~ 133 (283)
T 1w98_B 57 LMEVCEVYKLHR--ETFYLAQDFFDRYMATQ-ENVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILT 133 (283)
T ss_dssp HHHHHHHTTCBH--HHHHHHHHHHHHHHHHC-CCCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHH
T ss_pred HHHHHHHhCCCc--cHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHH
Confidence 567888999984 79999999999998862 2467889999999999999999976 999999999884 68999999
Q ss_pred HHHHHHHHhCCCCCC-----cHHHHHHHhCCcc-h-----------HHHHHHHHHHHHHhhhhccccccccCCCCChhHH
Q 023151 80 SFNSLQNSIGFKNEL-----DIRELGIRFGCIR-L-----------IPLVQKGLSLFKDRFTAALPASRKTSADFSRPVF 142 (286)
Q Consensus 80 ~yr~l~~~LgL~~~~-----~I~~ia~qlg~s~-v-----------~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~ 142 (286)
+.+.|.+.||.+..+ ++.+++..++++. . ...+..+++..--. ...+.|.|..+
T Consensus 134 mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~d---------~~~l~~~PS~i 204 (283)
T 1w98_B 134 MELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVLD---------VDCLEFPYGIL 204 (283)
T ss_dssp HHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHHS---------GGGGGSCHHHH
T ss_pred HHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHhh---------hhhhcCCHHHH
Confidence 999999999987753 6999999888754 2 12344555543211 11344689999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhh
Q 023151 143 TAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCH 186 (286)
Q Consensus 143 AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~ 186 (286)
||||+|+|+. +..+...+|+++.++++.++.|..+..
T Consensus 205 AaAai~la~~-------~~~l~~~tg~~~~~i~~c~~~l~~~~~ 241 (283)
T 1w98_B 205 AASALYHFSS-------SELMQKVSGYQWCDIENCVKWMVPFAM 241 (283)
T ss_dssp HHHHHHHTSC-------HHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-------hHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 9999999962 788999999999999999999977543
No 19
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=99.31 E-value=2.9e-10 Score=105.83 Aligned_cols=174 Identities=9% Similarity=0.002 Sum_probs=140.1
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCC-CCCCHHHHHHHhC--CCHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFD-VIFDRKTAIKLSG--MSEKAYNR 79 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~-iprd~~e~~k~sg--~~~k~y~~ 79 (286)
|-+++.+++|+. .++-.|-.|+.+...+ ..+.+.....++++||++||+... .|.++++++.+++ .+++++.+
T Consensus 78 l~ev~~~~~l~~--~t~~lAv~~lDRfls~--~~v~~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~ 153 (306)
T 3g33_B 78 MLEVCEEQRCEE--EVFPLAMNYLDRYLSC--VPTRKAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRD 153 (306)
T ss_dssp HHHHHHHTTCCT--THHHHHHHHHHHHHHH--CCCCGGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHH
T ss_pred HHHHHHHhCCcH--hHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHH
Confidence 457889999996 6999999999999998 557788999999999999999854 6889999999887 58999999
Q ss_pred HHHHHHHHhCCCCCC-----cHHHHHHHhCCcc-----hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHH
Q 023151 80 SFNSLQNSIGFKNEL-----DIRELGIRFGCIR-----LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYL 149 (286)
Q Consensus 80 ~yr~l~~~LgL~~~~-----~I~~ia~qlg~s~-----v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~ 149 (286)
+-+.|.+.||-+..+ ++..|...++++. +...|..+++..-- -...+.|.|..+||||+|+
T Consensus 154 mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~---------d~~~l~~~PS~IAaAai~l 224 (306)
T 3g33_B 154 WEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCAT---------DYTFAMYPPSMIATGSIGA 224 (306)
T ss_dssp HHHHHHHHTTTCCCCCCGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHH---------CGGGTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHh---------hhhhccCCHHHHHHHHHHH
Confidence 999999999987653 7999999998875 33445555553221 1223557899999999999
Q ss_pred HHHhCCCCCCH-----HHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 150 CAKKHKLKVDK-----LKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 150 A~~~~k~kvtQ-----~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
|...++.+... ..|...+|+++.++++.++.|.+++-...
T Consensus 225 A~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l~~~~l 269 (306)
T 3g33_B 225 AVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAALRESL 269 (306)
T ss_dssp HHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999876554 67889999999999999999988666544
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.20 E-value=3.2e-11 Score=105.30 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=82.7
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFN 82 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr 82 (286)
|.+++++||+++ .+.+.|..+++.+... ++..|++..++|+||||+||+.+|.+++.+++++++|+++..+.++|+
T Consensus 106 l~r~~~~l~l~~--~~~~~A~~i~~~~~~~--~l~~g~~P~~IAaAaiylA~~~~~~~~~~~~i~~~~~v~~~tI~~~~~ 181 (207)
T 1c9b_A 106 MSRFCSNLCLPK--QVQMAATHIARKAVEL--DLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYR 181 (207)
T ss_dssp HHHHHHHTTCCH--HHHHHHHHHHHHHHHT--TCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHCCCCH--HHHHHHHHHHHHHHHc--CccCCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 789999999985 7999999999999986 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCC
Q 023151 83 SLQNSIGFKNE 93 (286)
Q Consensus 83 ~l~~~LgL~~~ 93 (286)
.|.+.||+..|
T Consensus 182 ~l~~~l~~~~p 192 (207)
T 1c9b_A 182 LIYPRAPDLFP 192 (207)
T ss_dssp HHGGGHHHHSC
T ss_pred HHHHHHHHhCh
Confidence 99999998664
No 21
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=98.57 E-value=6.5e-09 Score=98.59 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFN 82 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr 82 (286)
|.|++++|||++ .|...|.+|.+.+... +++.||+..++|+||||+||+.+|.+++..+|++++|++.-.+.+.|+
T Consensus 239 i~Rf~s~L~l~~--~v~~~A~~i~~~~~~~--~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~ryk 314 (345)
T 4bbr_M 239 IPRFCSHLGLPM--QVTTSAEYTAKKCKEI--KEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYK 314 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCcH--HHHHHHHHHHHHHHhc--ccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 679999999986 7999999999999997 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCC
Q 023151 83 SLQNSIGFKN 92 (286)
Q Consensus 83 ~l~~~LgL~~ 92 (286)
.|...++-=.
T Consensus 315 el~~~~~~l~ 324 (345)
T 4bbr_M 315 ILYEHRDKLV 324 (345)
T ss_dssp ----------
T ss_pred HHHHHHHhhc
Confidence 9999888644
No 22
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=98.36 E-value=4.7e-08 Score=92.33 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFN 82 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr 82 (286)
|.|++++|||++ .|...|..|.+.+... ++..|++..++|+||||+||+.+|.+++..++++++|++...+.+.|+
T Consensus 239 i~Rf~~~L~l~~--~v~~~A~~i~~~~~~~--~l~~Gr~P~~IAaAaIylAa~~~~~~~t~~eIa~~~~Vse~TIr~~yk 314 (345)
T 3k7a_M 239 IPRFCSHLGLPM--QVTTSAEYTAKKCKEI--KEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYK 314 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCCH--HHHHHHHHHHHHHHHh--chhcCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 568999999996 7999999999999987 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhC
Q 023151 83 SLQNSIG 89 (286)
Q Consensus 83 ~l~~~Lg 89 (286)
.|...++
T Consensus 315 el~~~~~ 321 (345)
T 3k7a_M 315 ILYEHRD 321 (345)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 9988776
No 23
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=97.91 E-value=4.8e-05 Score=59.99 Aligned_cols=84 Identities=13% Similarity=0.211 Sum_probs=69.4
Q ss_pred cHHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCC---CCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHH
Q 023151 2 DLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSS---IIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYN 78 (286)
Q Consensus 2 ei~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l---~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~ 78 (286)
.|++|+=.+|+++ |++.|++|+.+-....+.. -.-.+---.++||+|.|||.+++.+|+..++..||+++.++.
T Consensus 5 ~v~dLcVqfgc~e---~~~~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~lk~~~f~ 81 (95)
T 3m03_A 5 GIRDLAVQFSCIE---AVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFD 81 (95)
T ss_dssp CHHHHHHHHTCGG---GHHHHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTCBCHHHHH
T ss_pred CHHHHHHHhCCHH---HHHHHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHH
Confidence 6899999999995 9999999988887642210 001234568999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 023151 79 RSFNSLQNSI 88 (286)
Q Consensus 79 ~~yr~l~~~L 88 (286)
+--..+++.+
T Consensus 82 ~l~~~~e~~~ 91 (95)
T 3m03_A 82 RLCKQLEKIG 91 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888888764
No 24
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=97.89 E-value=0.002 Score=58.20 Aligned_cols=166 Identities=10% Similarity=-0.027 Sum_probs=122.8
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCC-CCCCHHHHHHHhC--CCHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFD-VIFDRKTAIKLSG--MSEKAYNR 79 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~-iprd~~e~~k~sg--~~~k~y~~ 79 (286)
|-++..+++|.. .+.--|-.|+.+...+. .+.....-.++++|+++||+... .|.+.++++..++ .+++++.+
T Consensus 56 l~ev~~~~~l~~--eT~~lAv~~lDRfLs~~--~v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~ 131 (252)
T 1f5q_B 56 MFCVCKDLRQDN--NVFPLAVALLDELFLST--RIDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLT 131 (252)
T ss_dssp HHHHHHHTTCCT--THHHHHHHHHHHHHHHS--CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHcCCCh--HHHHHHHHHHHHHhcCC--CcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHH
Confidence 346788999985 69999999999998873 34556788899999999999876 4889999998875 48899999
Q ss_pred HHHHHHHHhCCCCCC-----cHHHHHHHhCCcc-----hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHH
Q 023151 80 SFNSLQNSIGFKNEL-----DIRELGIRFGCIR-----LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYL 149 (286)
Q Consensus 80 ~yr~l~~~LgL~~~~-----~I~~ia~qlg~s~-----v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~ 149 (286)
.=+.+-+.||-+..+ ++..+...++.+. +...|..+++..- . . ...+.|.|+.+||||...
T Consensus 132 mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~~~~~a~~~l~~~l----~---d--~~~l~~~PS~iAaaa~~~ 202 (252)
T 1f5q_B 132 LEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLNIYNLCRPKIFCAL----C---D--GRSAMKRPVLITLACMHL 202 (252)
T ss_dssp HHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH----H---C--HHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHH----h---c--hhhhccCHHHHHHHHHHH
Confidence 999999999977643 6888888888765 2334444444321 1 1 113456789999999543
Q ss_pred HHHhCCCCCC----HHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 150 CAKKHKLKVD----KLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 150 A~~~~k~kvt----Q~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
+. .+.... ...+...+|+++..++.-++.|.+
T Consensus 203 ~l--~~~~~~~~~~~~~L~~~t~~~~~~l~~C~~~i~~ 238 (252)
T 1f5q_B 203 TM--NQKYDYYENRIDGVCKSLYITKEELHQCCDLVDI 238 (252)
T ss_dssp HH--TTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred Hh--ccCCCchhhHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 32 222222 345778999999999998888865
No 25
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=97.00 E-value=0.0012 Score=59.15 Aligned_cols=85 Identities=11% Similarity=0.007 Sum_probs=70.9
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFN 82 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr 82 (286)
|.++...+|++++ .+...|..+..++.... ++..|.+...+|+||+|+|++.+|.+...+++..++|++...+..+++
T Consensus 143 l~~~~~~l~~~~~-~~~~~a~~l~e~sl~~~-~~~~~~~Ps~iAaAai~lA~~~~~~~~w~~~l~~~~g~~~~~i~~~~~ 220 (260)
T 2cch_B 143 LTQYFLHQQPANC-KVESLAMFLGELSLIDA-DPYLKYLPSVIAGAAFHLALYTVTGQSWPESLIRKTGYTLESLKPCLM 220 (260)
T ss_dssp HHHHHTTCSSCCH-HHHHHHHHHHHHHHHCH-HHHTTSCHHHHHHHHHHHHHHHHHSCCSCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHcCCChH-HHHHHHHHHHHHHHHhH-HHHhCCCHHHHHHHHHHHHHHHhCCCcchHHHHHHhCcCHHHHHHHHH
Confidence 5678888998863 68888888888875431 225788999999999999999998887778899999999999999999
Q ss_pred HHHHHhC
Q 023151 83 SLQNSIG 89 (286)
Q Consensus 83 ~l~~~Lg 89 (286)
.|...+.
T Consensus 221 ~l~~~~~ 227 (260)
T 2cch_B 221 DLHQTYL 227 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 26
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=97.00 E-value=0.0063 Score=53.61 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=67.2
Q ss_pred cHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCCCCCHHHHHHHh------
Q 023151 95 DIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVC------ 167 (286)
Q Consensus 95 ~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~s------ 167 (286)
.|.+++..|+++. +...|..++++|-.+.. +..| +++-.+++||+|+||+..+..++=.+++.++
T Consensus 34 ~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~--~~~~------~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~~ 105 (235)
T 1zp2_A 34 VVQTFGDRLRLRQRVLATAIVLLRRYMLKKN--EEKG------FSLEALVATCIYLSCKVEECPVHIRTICNEANDLWSL 105 (235)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC--SCCC------CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc--cccc------cCHHHHHHHHHHHHhccccCcccHHHHHHHHHHHccc
Confidence 5889999999999 99999999996654421 1111 3677899999999999999999888998877
Q ss_pred --CCCHHHHHHHHHHHHH-hhhhh
Q 023151 168 --GTSETEFASVSTTMKD-LCHDV 188 (286)
Q Consensus 168 --gvt~vt~rnr~ke~~~-~c~d~ 188 (286)
.++..+|...+..|.. ++|++
T Consensus 106 ~~~~~~~~I~~~E~~iL~~L~f~l 129 (235)
T 1zp2_A 106 KVKLSRSNISEIEFEIISVLDAFL 129 (235)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccHHHHHHHHHHHHHHCCCcE
Confidence 5788888888877543 44443
No 27
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=96.65 E-value=0.058 Score=49.06 Aligned_cols=92 Identities=20% Similarity=0.295 Sum_probs=66.4
Q ss_pred CCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccc
Q 023151 59 VIFDRKTAIKLSG-----MSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRK 132 (286)
Q Consensus 59 iprd~~e~~k~sg-----~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~ 132 (286)
.-+|.+++..... ++..++.+....+.+ .|.+++..|+++. +...|..++++|-.+.
T Consensus 16 Wlft~~el~~~~~~~~~~l~~~~e~~~R~~~~~--------~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~--------- 78 (285)
T 3rgf_B 16 WILDKQDLLKERQKDLKFLSEEEYWKLQIFFTN--------VIQALGEHLKLRQQVIATATVYFKRFYARY--------- 78 (285)
T ss_dssp HSCCHHHHHHHHTTGGGTSCHHHHHHHHHHHHH--------HHHHHHHHTTCCHHHHHHHHHHHHHHHHHS---------
T ss_pred cCcCHHHHHHhhhcccccCCHHHHHHHHHHHHH--------HHHHHHHHhCCCHHHHHHHHHHHHHHHHhC---------
Confidence 3577777766433 566655444333332 5889999999999 9999999999665432
Q ss_pred cCCCCChhHHHHHHHHHHHHhCCCCC-CHHHHHHHh
Q 023151 133 TSADFSRPVFTAVAFYLCAKKHKLKV-DKLKLIEVC 167 (286)
Q Consensus 133 ~~~D~~pp~~AAAAlY~A~~~~k~kv-tQ~kla~~s 167 (286)
.-.++++-.+++||+|+||+.....+ +..++..++
T Consensus 79 s~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~ 114 (285)
T 3rgf_B 79 SLKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAA 114 (285)
T ss_dssp CTTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred CchhcCHHHHHHHHHHHHHhhhccccccHHHHHHHH
Confidence 22234677899999999999999877 678888765
No 28
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=96.62 E-value=0.014 Score=51.95 Aligned_cols=83 Identities=10% Similarity=-0.013 Sum_probs=66.4
Q ss_pred HHHHHHHhCCCCChh---HHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhC-CCCCC----HHHHHHHhCCCH
Q 023151 3 LSDIAKKLGLSDSKQ---LIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRF-DVIFD----RKTAIKLSGMSE 74 (286)
Q Consensus 3 i~ria~kLgL~e~~~---V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~-~iprd----~~e~~k~sg~~~ 74 (286)
|.++...+|+++. . +...|..+...+... ....+.....+|+||+|+|++.. +.|++ ..++..++|++.
T Consensus 156 l~~~~~~~~~~~~-~~~~~~~~a~~ll~~~l~d--~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~ 232 (254)
T 2f2c_A 156 LIPLCNALKIPED-LWPQLYEAASTTICKALIQ--PNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFST 232 (254)
T ss_dssp HHHHHHHTTCCGG-GHHHHHHHHHHHHHHHTTS--GGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCH
T ss_pred HHHHHHHcCCChh-hHHHHHHHHHHHHHHHHcC--cchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCH
Confidence 5678889998763 2 345577777766654 34568889999999999999987 45666 788999999999
Q ss_pred HHHHHHHHHHHHHh
Q 023151 75 KAYNRSFNSLQNSI 88 (286)
Q Consensus 75 k~y~~~yr~l~~~L 88 (286)
..+..|++.|...+
T Consensus 233 ~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 233 NTVRTVKDQVSEAF 246 (254)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998875
No 29
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=96.56 E-value=0.0016 Score=58.86 Aligned_cols=82 Identities=13% Similarity=-0.002 Sum_probs=69.7
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFN 82 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr 82 (286)
|.++...+|++. .+...|..+...+... ....|.+...+|+||+|+|++.+|.+....++..++|++...+..+++
T Consensus 142 l~~~~~~~~~~~--~~~~~a~~l~e~sl~~--~~~~~~~Ps~iAaAai~lA~~~l~~~~w~~~l~~~tg~~~~~l~~~~~ 217 (269)
T 2b9r_A 142 LRRASKIGEVDV--EQHTLAKYLMELTMLD--YDMVHFPPSQIAAGAFSLALKILDNGEWTPTLQHYLSYTEESLLPVMQ 217 (269)
T ss_dssp HHHHHHSSCCCH--HHHHHHHHHHHHGGGC--GGGSSSCTTHHHHHHHHHHHHHHTCCCSCTTHHHHSCCCSSTTTTHHH
T ss_pred HHHHHHhcCCCH--HHHHHHHHHHHHHHhh--hhhhcCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 567778888763 6888888888888765 556789999999999999999999877777899999999999999999
Q ss_pred HHHHHh
Q 023151 83 SLQNSI 88 (286)
Q Consensus 83 ~l~~~L 88 (286)
.|...+
T Consensus 218 ~l~~~~ 223 (269)
T 2b9r_A 218 HLAKNV 223 (269)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987754
No 30
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=96.36 E-value=0.0055 Score=55.24 Aligned_cols=89 Identities=8% Similarity=0.060 Sum_probs=67.8
Q ss_pred HHHHHHHhCCCCCh--hHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCC--C-------CCHHHHHHHhC
Q 023151 3 LSDIAKKLGLSDSK--QLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDV--I-------FDRKTAIKLSG 71 (286)
Q Consensus 3 i~ria~kLgL~e~~--~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~i--p-------rd~~e~~k~sg 71 (286)
|.++...+|+++.. .+...|..+...+... ....|.....+|+||||+|+..+|+ + ...+++.+++|
T Consensus 161 l~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~d--~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~ 238 (271)
T 2w96_A 161 IEHFLSKMPEAEENKQIIRKHAQTFVALCATD--VKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIK 238 (271)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHHHTS--THHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHT
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHHhh--hhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHC
Confidence 56788899987520 1234677777766543 3356788999999999999998864 1 12468899999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCC
Q 023151 72 MSEKAYNRSFNSLQNSIGFKNE 93 (286)
Q Consensus 72 ~~~k~y~~~yr~l~~~LgL~~~ 93 (286)
++...+.++++.|...++.+..
T Consensus 239 v~~~~l~~c~~~i~~l~~~~~~ 260 (271)
T 2w96_A 239 CDPDCLRACQEQIEALLESSLR 260 (271)
T ss_dssp SCHHHHHHHHHHHHHHHTTTTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 31
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=96.34 E-value=0.015 Score=51.96 Aligned_cols=85 Identities=8% Similarity=-0.083 Sum_probs=66.8
Q ss_pred HHHHHHHhCCCCCh--hHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCC------CCHHHHHHHhCCCH
Q 023151 3 LSDIAKKLGLSDSK--QLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVI------FDRKTAIKLSGMSE 74 (286)
Q Consensus 3 i~ria~kLgL~e~~--~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~ip------rd~~e~~k~sg~~~ 74 (286)
|.++...+|+++.. .+...|..+..++... ....+.....+|+||+++|+..+|++ .-.+.+..++|++.
T Consensus 155 l~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d--~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~ 232 (257)
T 1g3n_C 155 TSFLLLKLVGGSQHLDFWHHEVNTLITKALVD--PLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDV 232 (257)
T ss_dssp HHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTS--TTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHhC--cchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCH
Confidence 56788899988631 1345577777777654 45678899999999999999999863 44678889999999
Q ss_pred HHHHHHHHHHHHHhC
Q 023151 75 KAYNRSFNSLQNSIG 89 (286)
Q Consensus 75 k~y~~~yr~l~~~Lg 89 (286)
..+..+++.|...+.
T Consensus 233 ~~l~~c~~~i~~l~~ 247 (257)
T 1g3n_C 233 SVLQAAVEQILTSVS 247 (257)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988763
No 32
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=96.17 E-value=0.032 Score=49.58 Aligned_cols=64 Identities=22% Similarity=0.328 Sum_probs=51.3
Q ss_pred cHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCCCCCHHHHHHHh
Q 023151 95 DIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVC 167 (286)
Q Consensus 95 ~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~s 167 (286)
.|-+++..|+++. +...|..+++ ||... ..-.++++-.+++||+|+||+.....++=.+++.++
T Consensus 37 ~i~~v~~~l~l~~~t~~~A~~~~d----Rf~~~-----~~~~~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~ 101 (257)
T 2ivx_A 37 LIQEMGQRLNVSQLTINTAIVYMH----RFYMH-----HSFTKFNKNIISSTALFLAAKVEEQARKLEHVIKVA 101 (257)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH----HHTTT-----SCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHH----HHHhh-----CChhhhCHHHHHHHHHHHHhccccCCcCHHHHHHHH
Confidence 5889999999999 9999999999 55531 122234677799999999999999987777887765
No 33
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=95.85 E-value=0.063 Score=47.50 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=50.7
Q ss_pred cHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Q 023151 95 DIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCG 168 (286)
Q Consensus 95 ~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sg 168 (286)
.|-+++..|+++. +...|..+++ ||... ..-.+.++-.+++||+|+||+.....++=.+++.+++
T Consensus 47 ~i~~v~~~l~l~~~t~~~A~~~~d----Rf~~~-----~~~~~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~~ 112 (258)
T 2i53_A 47 FIFDVGTRLGLHYDTLATGIIYFH----RFYMF-----HSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTAR 112 (258)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH----HHTTT-----SCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHH----HHHHh-----CChhhcCHHHHHHHHHHHHHccccccccHHHHHHHHH
Confidence 6889999999999 9999999999 44431 1122235667999999999999998887777776653
No 34
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=95.60 E-value=0.059 Score=50.04 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=53.1
Q ss_pred cHHHHHHHhC--Ccc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCC
Q 023151 95 DIRELGIRFG--CIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTS 170 (286)
Q Consensus 95 ~I~~ia~qlg--~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt 170 (286)
.|.++|..|+ ++. +...|..+++ ||... ..-.++++-.+++||+|+||+.....++=.+++..+...
T Consensus 63 ~I~ev~~~l~~~Lp~~t~~tA~~~~~----RF~~~-----~s~~~~~~~lva~acLfLA~K~EE~~~~l~d~v~~~~~~ 132 (323)
T 1jkw_A 63 RLLEFCSVFKPAMPRSVVGTACMYFK----RFYLN-----NSVMEYHPRIIMLTCAFLACKVDEFNVSSPQFVGNLRES 132 (323)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHHHHHH----HHGGG-----SCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHGGGSSSC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH----HHhhh-----CChhhcCHHHHHHHHHHHHHhhhcCCCCHHHHHHHhccC
Confidence 3789999999 999 9999999999 55531 223345788899999999999999998877777665544
No 35
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=95.27 E-value=0.095 Score=48.27 Aligned_cols=86 Identities=12% Similarity=0.142 Sum_probs=64.6
Q ss_pred HHHHHHHhCCCCCh--hHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCC-CCC----HHHHHHHhCCCHH
Q 023151 3 LSDIAKKLGLSDSK--QLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDV-IFD----RKTAIKLSGMSEK 75 (286)
Q Consensus 3 i~ria~kLgL~e~~--~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~i-prd----~~e~~k~sg~~~k 75 (286)
|.++...+++++.. .+...|..+..++... ....+.....+|+|||++|++.++. |.. .+.+.+++|++..
T Consensus 175 l~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~d--~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~ 252 (306)
T 3g33_B 175 LAFILHRLSLPRDRQALVKKHAQTFLALCATD--YTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVD 252 (306)
T ss_dssp HHHHHHTSSCCTTTHHHHHHHHHHHHHHHHHC--GGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHhh--hhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHH
Confidence 56778888887531 1456677777766654 4456788999999999999999984 322 3677889999999
Q ss_pred HHHHHHHHHHHHhCC
Q 023151 76 AYNRSFNSLQNSIGF 90 (286)
Q Consensus 76 ~y~~~yr~l~~~LgL 90 (286)
.+..|+..|...+.-
T Consensus 253 ~l~~c~~~I~~l~~~ 267 (306)
T 3g33_B 253 CLRACQEQIEAALRE 267 (306)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887764
No 36
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=94.28 E-value=0.076 Score=50.14 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=49.8
Q ss_pred cHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCCCCCHHHHHHHh
Q 023151 95 DIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVC 167 (286)
Q Consensus 95 ~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~s 167 (286)
.|-+++..|+|+. +...|..+++ +|... ..-.++++-.+++||||+||+.....++=.+++.++
T Consensus 44 wI~ev~~~l~L~~~t~~tAv~~~d----RFl~~-----~sv~~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~ 108 (358)
T 2pk2_A 44 LLQDMGQRLNVSQLTINTAIVYMH----RFYMI-----QSFTRFPGNSVAPAALFLAAKVEEQPKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHTTTTCCHHHHHHHHHHHH----HHTTT-----SCTTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH----HHHhc-----CCcccccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 5889999999999 9999999999 55531 222345677899999999999999977656665443
No 37
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=92.84 E-value=0.52 Score=42.63 Aligned_cols=81 Identities=11% Similarity=0.069 Sum_probs=59.2
Q ss_pred cHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCC-CCCHHHHHHHhC--CC
Q 023151 95 DIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKL-KVDKLKLIEVCG--TS 170 (286)
Q Consensus 95 ~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~-kvtQ~kla~~sg--vt 170 (286)
.+-+++..|+++. +.-.|..+++.|-.... . ..+. +.-.+++||+|+||+.... ..+=.+++.+++ .+
T Consensus 56 wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~-~-v~~~------~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~ 127 (283)
T 1w98_B 56 WLMEVCEVYKLHRETFYLAQDFFDRYMATQE-N-VVKT------LLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACS 127 (283)
T ss_dssp HHHHHHHHTTCBHHHHHHHHHHHHHHHHHCC-C-CCGG------GHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSC
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHhCC-C-CCHH------HHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCC
Confidence 3778999999999 99999999995553310 0 1122 4667999999999999877 445577877774 67
Q ss_pred HHHHHHHHHHHHH
Q 023151 171 ETEFASVSTTMKD 183 (286)
Q Consensus 171 ~vt~rnr~ke~~~ 183 (286)
..+|.+-+..|.+
T Consensus 128 ~~ei~~mE~~IL~ 140 (283)
T 1w98_B 128 GDEILTMELMIMK 140 (283)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877777543
No 38
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=89.82 E-value=0.63 Score=41.58 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=64.2
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCc---chHHHHHHHHHHHHhhCCCCCCHHHH-------------
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGV---GEVCKAVICLELAASRFDVIFDRKTA------------- 66 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Gr---s~~~~aaacLylAcr~~~iprd~~e~------------- 66 (286)
|+++-.|-++|| .|++.|-+|-|...-.- =-+|. --..++|||+-+|+...++|+.+.|+
T Consensus 19 lr~L~kKs~~~e--aVL~~AieLar~fvg~r--R~rgqRvE~q~dVAAAc~miAae~~~~PiplaE~r~lD~sL~Dvelr 94 (260)
T 3h4c_A 19 MRGLHKKAVLPE--PVLDRGIELARAFVGGR--RARGQRVERQPDVAAACLMIAAEEAQQPLPLAEVRCLDSSLGDVELR 94 (260)
T ss_dssp HHHHHHHTTCCH--HHHHHHHHHHHHHHHHH--HHTTCCCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHCTTCCCHHHH
T ss_pred HHHHHhhccCcH--HHHHHHHHHHHHHhhhh--hhhcccccccHHHHHHHHHHHHHHcCCCccHHHHHHHhhhhhHHHHH
Confidence 578889999997 79999999999888741 12343 35679999999999999999998665
Q ss_pred ----HHHhCCCHHH-------HHHHHHHHHHHhCCCCCCcH
Q 023151 67 ----IKLSGMSEKA-------YNRSFNSLQNSIGFKNELDI 96 (286)
Q Consensus 67 ----~k~sg~~~k~-------y~~~yr~l~~~LgL~~~~~I 96 (286)
++-.++.+.+ ..|-+-.....|||+...|.
T Consensus 95 r~Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s~Y~ 135 (260)
T 3h4c_A 95 RADIVRELHLEDSERRLRDTFADNLLVKYILKLGLQVSLYL 135 (260)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchhhhh
Confidence 5555554321 22334455667777765543
No 39
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=89.20 E-value=0.8 Score=43.41 Aligned_cols=79 Identities=8% Similarity=-0.090 Sum_probs=66.2
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFN 82 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr 82 (286)
|..|+.+|+++++ .+.++.=.+|.-+......|+.+|-.-=+..-|+|+-|+..+...+..+|++..+--.......||
T Consensus 222 l~~LC~~L~~~~~-~~~~~iWt~fe~~l~~~t~L~~dRHLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr~qpq~~~~vyr 300 (347)
T 2r7g_A 222 LNTLCERLLSEHP-ELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFK 300 (347)
T ss_dssp HHHHHHHHCTTCT-THHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTSTTCCTHHHH
T ss_pred HHHHHHHhCCCch-HHHHHHHHHHHHHHHhChHhhcCCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcccccchhee
Confidence 6789999998874 688899999998888878899999999999999999999999999999999977664433333344
No 40
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=87.84 E-value=1.1 Score=43.54 Aligned_cols=80 Identities=8% Similarity=-0.090 Sum_probs=66.3
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFN 82 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr 82 (286)
|+.|+.+|+++++ .+.++-=.+|.-+......|+++|-+-=++--|+|+-|+..+...+..+|+...+--.-.....||
T Consensus 286 l~~LC~~L~~~~~-~l~~~IWt~fe~~l~~~teLm~dRHLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr~qPqa~~~vyr 364 (411)
T 4ell_A 286 LNTLCERLLSEHP-ELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLPHAVQETFK 364 (411)
T ss_dssp HHHHHHHHCTTST-THHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHTTSTTCCTHHHH
T ss_pred HHHHHHHhCCCcH-HHHHHHHHHHHHHHHhhhHhhccccHHHHHHHHHHHHHhhccCCCCHHHHHHHHHhCcCCCCceeE
Confidence 6789999999874 688888788888888878999999999999999999999999999999999977664443344444
Q ss_pred H
Q 023151 83 S 83 (286)
Q Consensus 83 ~ 83 (286)
.
T Consensus 365 ~ 365 (411)
T 4ell_A 365 R 365 (411)
T ss_dssp S
T ss_pred E
Confidence 3
No 41
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=85.77 E-value=5.1 Score=35.70 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=57.1
Q ss_pred cHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCCC-CCHHHHHHHhC--CC
Q 023151 95 DIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLK-VDKLKLIEVCG--TS 170 (286)
Q Consensus 95 ~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~k-vtQ~kla~~sg--vt 170 (286)
.+-+++..|+++. +.-.|..+++ ||++..+..+. ..-.++++|+|+||+..... .+=.+++..++ .+
T Consensus 55 Wl~ev~~~~~l~~eT~~lAv~~lD----RfLs~~~v~~~-----~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt 125 (252)
T 1f5q_B 55 WMFCVCKDLRQDNNVFPLAVALLD----ELFLSTRIDRE-----NYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATT 125 (252)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHH----HHHHHSCCCGG-----GHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCC
T ss_pred HHHHHHHHcCCChHHHHHHHHHHH----HHhcCCCcCHH-----HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCC
Confidence 4788999999999 9999999999 55543222221 34559999999999977664 45566766663 67
Q ss_pred HHHHHHHHHHHH
Q 023151 171 ETEFASVSTTMK 182 (286)
Q Consensus 171 ~vt~rnr~ke~~ 182 (286)
+.+|..-...|.
T Consensus 126 ~~~i~~mE~~IL 137 (252)
T 1f5q_B 126 ADKLLTLEVKSL 137 (252)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 42
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=83.33 E-value=3.2 Score=38.50 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=65.6
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCC--cchHHHHHHHHHHHHhhC-CCCCCHHHHHHHhCCCHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIG--VGEVCKAVICLELAASRF-DVIFDRKTAIKLSGMSEKAYNR 79 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~G--rs~~~~aaacLylAcr~~-~iprd~~e~~k~sg~~~k~y~~ 79 (286)
...++..|+|++ .+.++|-.+|+..... ++.+-+ -+..-.-.+|||+||... |-.+++-++.+.++++-.++-.
T Consensus 6 F~~lC~~Lnld~--~~~~~Aw~~~~~~~~~-~~~~~~~~~~~~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff~ 82 (304)
T 2qdj_A 6 FTALCQKLKIPD--HVRERAWLTWEKVSSV-DGVLGGYIQKKKELWGICIFIAAVDLDEMSFTFTELQKNIEISVHKFFN 82 (304)
T ss_dssp HHHHHHHTTCCH--HHHHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHcCCCH--HHHHHHHHHHHHHhcc-ccccCCCccchHHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCHHHHHH
Confidence 467899999996 7999999999998774 121111 134555667799999754 7889999999999999877754
Q ss_pred HHHHHHHHhCCCCCC--cHHHHHHHhCCcc
Q 023151 80 SFNSLQNSIGFKNEL--DIRELGIRFGCIR 107 (286)
Q Consensus 80 ~yr~l~~~LgL~~~~--~I~~ia~qlg~s~ 107 (286)
=.+. .|++... .|.+|=..|+++.
T Consensus 83 k~~~----~d~~~~~~~~i~~Le~~f~v~~ 108 (304)
T 2qdj_A 83 LLKE----IDTSTKVDNAMSRLLKKYDVLF 108 (304)
T ss_dssp HHTT----SCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----cCCCHHHHHHHHHHHHHHHHHH
Confidence 4443 4521111 3555555554444
No 43
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=82.35 E-value=2.8 Score=30.21 Aligned_cols=45 Identities=9% Similarity=0.134 Sum_probs=31.7
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
|+.++....-.--+--.......||.+||+.+||++.||.+....
T Consensus 10 ~~~~~~~~~~~~~l~~~r~~~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 10 HHHMKMRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCccccHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 334444444444445555666899999999999999999987653
No 44
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=78.53 E-value=4.2 Score=37.72 Aligned_cols=72 Identities=7% Similarity=-0.017 Sum_probs=50.0
Q ss_pred HHHHHHHhCCcc-hHHHHHHHHHHHHHh-h-hhccccccccCCCCChhHHHHHHHHHHHH-hCCCCCCHHHHHHHhCCCH
Q 023151 96 IRELGIRFGCIR-LIPLVQKGLSLFKDR-F-TAALPASRKTSADFSRPVFTAVAFYLCAK-KHKLKVDKLKLIEVCGTSE 171 (286)
Q Consensus 96 I~~ia~qlg~s~-v~~~A~eiL~~~ke~-~-~~~L~~gk~~~~D~~pp~~AAAAlY~A~~-~~k~kvtQ~kla~~sgvt~ 171 (286)
..++|.+|++++ +...|-++.+..+.. + ..+.+.+. --+-.||+|.||. ..+-.++=.+|...++++-
T Consensus 6 F~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~--------~~~w~acLY~a~~~~~~n~vsLt~LLr~~~lsi 77 (304)
T 2qdj_A 6 FTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKK--------KELWGICIFIAAVDLDEMSFTFTELQKNIEISV 77 (304)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHC----------CH--------HHHHHHHHHHHHHHHTCCCSCHHHHHHHHTCCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccch--------HHHHHHhHHHHhhccCCCcCcHHHHHHHcCCCH
Confidence 467999999999 999999988876642 1 11222222 2233344999997 6666789999999999998
Q ss_pred HHHH
Q 023151 172 TEFA 175 (286)
Q Consensus 172 vt~r 175 (286)
++|=
T Consensus 78 ~~Ff 81 (304)
T 2qdj_A 78 HKFF 81 (304)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 45
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=78.08 E-value=3.6 Score=42.11 Aligned_cols=69 Identities=6% Similarity=-0.151 Sum_probs=59.2
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCC
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGM 72 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~ 72 (286)
|..|+.+|+++.+ .+.++.=.+|.-+......|+++|-.-=++.-|+|+-|+..+...+..+|+...+-
T Consensus 531 l~~LC~~L~~~~~-~i~~~IWt~fe~~l~~~t~L~~dRHLDQiilCsiY~icKv~~~~ltFk~Ii~~Yr~ 599 (656)
T 4elj_A 531 LNTLCERLLSEHP-ELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNIDLKFKIIVTAYKD 599 (656)
T ss_dssp HHHHHHHHCTTCT-HHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHT
T ss_pred HHHHHHHhccCch-HHHHHHHHHHHHHHHhhHHHHhcchHHHHHHHHHHHHHHhccCCcCHHHHHHHHHh
Confidence 6789999998874 78888888888877776789999999999999999999999999998888875443
No 46
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=77.33 E-value=3.2 Score=27.82 Aligned_cols=46 Identities=7% Similarity=0.010 Sum_probs=39.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCC
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGC 105 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~ 105 (286)
..+.++|++..|++...+....+.+.+.||++....+-.+|.+.|+
T Consensus 13 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~l~~~~~~~g~ 58 (61)
T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRL 58 (61)
T ss_dssp SCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHCSCC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCC
Confidence 4577999999999999999999999999999877667777777665
No 47
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=76.52 E-value=2.2 Score=30.44 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHH
Q 023151 158 VDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 158 vtQ~kla~~sgvt~vt~rnr~k 179 (286)
+|+.+||+.+||+..|+.+...
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4899999999999999999765
No 48
>4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens}
Probab=75.23 E-value=7.9 Score=39.59 Aligned_cols=75 Identities=15% Similarity=0.061 Sum_probs=55.3
Q ss_pred cHHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCC---CCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHH
Q 023151 2 DLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSS---IIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYN 78 (286)
Q Consensus 2 ei~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l---~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~ 78 (286)
+...++..|++++ .+.++|-+.|.........+ +-|....-.+. .+|+||...|-.+++-.+.+.++++-.++-
T Consensus 7 ~f~~lC~~Ln~d~--~~~~~Aw~~~~~~~~~~~~l~~tleg~~~~W~aC-~ly~~~~~~gn~vsLt~lLr~~~lsl~~FF 83 (656)
T 4elj_A 7 DFTALCQKLKIPD--HVRERAWLTWEKVSSVDGVLGGYIQKKKELWGIC-IFIAAVDLDEMSFTFTELQKNIEISVHKFF 83 (656)
T ss_dssp HHHHHHHHTTCCH--HHHHHHHHHHHHHHHHCSCC-----CCHHHHHHH-HHHHHHHTTCCCSCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhCCCH--HHHHHHHHHHHHHHhccccccCCcccchHHhhhh-hheeeeeccCCeeeHHHHHHHhcCCHHHHH
Confidence 4578999999996 79999999999998531111 22333333444 477777778999999999999999987764
Q ss_pred H
Q 023151 79 R 79 (286)
Q Consensus 79 ~ 79 (286)
+
T Consensus 84 ~ 84 (656)
T 4elj_A 84 N 84 (656)
T ss_dssp H
T ss_pred H
Confidence 4
No 49
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=74.93 E-value=12 Score=33.38 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=44.4
Q ss_pred HHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCCCCCHHHHH
Q 023151 96 IRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLI 164 (286)
Q Consensus 96 I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla 164 (286)
+++|-.+-++++ |.+.|.+|...|-..-.. -|++ +. .++.+|||||.+|+...+..++-.++-
T Consensus 19 lr~L~kKs~~~eaVL~~AieLar~fvg~rR~---rgqR--vE-~q~dVAAAc~miAae~~~~PiplaE~r 82 (260)
T 3h4c_A 19 MRGLHKKAVLPEPVLDRGIELARAFVGGRRA---RGQR--VE-RQPDVAAACLMIAAEEAQQPLPLAEVR 82 (260)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH---TTCC--CC-CHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHhhccCcHHHHHHHHHHHHHHhhhhhh---hccc--cc-ccHHHHHHHHHHHHHHcCCCccHHHHH
Confidence 566667778888 999999998865421110 1222 21 256699999999999999999876653
No 50
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=74.75 E-value=0.75 Score=39.06 Aligned_cols=117 Identities=9% Similarity=0.077 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHhC--CCHHHHHHHHHHHHHHhCC-CCCCcHHHHHHHhCCcchHHHHHHHHHHHHH
Q 023151 45 KAVICLELAASRFDVIFDRKTAIKLSG--MSEKAYNRSFNSLQNSIGF-KNELDIRELGIRFGCIRLIPLVQKGLSLFKD 121 (286)
Q Consensus 45 ~aaacLylAcr~~~iprd~~e~~k~sg--~~~k~y~~~yr~l~~~LgL-~~~~~I~~ia~qlg~s~v~~~A~eiL~~~ke 121 (286)
.+=|.|++| +-|+++++++++.+ ++...+..++..|...+.- ..++-|.+++.-+-+-. ...-...++
T Consensus 11 ~iEAlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t-~~~~~~~v~---- 81 (162)
T 1t6s_A 11 SLEALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLT-EPEFADLVR---- 81 (162)
T ss_dssp HHHHHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEE-CGGGHHHHH----
T ss_pred HHHHHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEE-cHHHHHHHH----
Confidence 334555543 88999999999999 9999999999999887631 12333333332221111 111112222
Q ss_pred hhhhccccccccCCCCChhHHHHHHH-HHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 122 RFTAALPASRKTSADFSRPVFTAVAF-YLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 122 ~~~~~L~~gk~~~~D~~pp~~AAAAl-Y~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
++.. ..+ ++-+.-||+ =+|..-.+..+|+.+|.+..||+ .++..+++.+
T Consensus 82 ~~~~---~~~-------~~~LS~aaLEtLaiIay~qPiTR~eI~~irGv~---~~~~v~~L~e 131 (162)
T 1t6s_A 82 QLLA---PVI-------QRRLSRSMLEVLAVVAWHQPVTKGEIQQIRGAS---PDYSIDRLLA 131 (162)
T ss_dssp HHHS---CHH-------HHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCC---CCSHHHHHHH
T ss_pred HHhc---ccc-------cCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCC---HHHHHHHHHH
Confidence 2211 111 345666776 56677778899999999999999 7778888765
No 51
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=74.51 E-value=6.3 Score=27.64 Aligned_cols=48 Identities=8% Similarity=-0.021 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCc
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCI 106 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~s 106 (286)
...+.++|++..|++...+.+.+..+.+.|+.+....+-.+|.++|.+
T Consensus 30 ~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~~~~~~~g~~ 77 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLVRMALAGGFG 77 (79)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTCC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence 356889999999999999999999999999998777777788877764
No 52
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=74.20 E-value=2.3 Score=26.46 Aligned_cols=26 Identities=12% Similarity=-0.024 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
...+..+||+..||++.||.+..+..
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 34689999999999999999987765
No 53
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=73.96 E-value=24 Score=29.61 Aligned_cols=35 Identities=11% Similarity=0.241 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
..++||.+||+..|+|+.|+.+..++|.+ .|+-..
T Consensus 191 ~~~lt~~~lA~~lG~sr~tvsR~l~~L~~-----~GlI~~ 225 (243)
T 3la7_A 191 DLKLSHQAIAEAIGSTRVTVTRLLGDLRE-----KKMISI 225 (243)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEE
T ss_pred eccCCHHHHHHHHCCcHHHHHHHHHHHHH-----CCCEEE
Confidence 46799999999999999999999999987 665443
No 54
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=71.36 E-value=6.9 Score=32.26 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=27.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..++||.+||+..|+|+.|+.+..++|.+
T Consensus 165 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 193 (220)
T 2fmy_A 165 ELGLNTEEIALMLGTTRQTVSVLLNDFKK 193 (220)
T ss_dssp ECSSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred eccCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 46899999999999999999999999987
No 55
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=70.19 E-value=36 Score=26.48 Aligned_cols=102 Identities=11% Similarity=0.131 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHh---CCCCC---CcHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHH
Q 023151 75 KAYNRSFNSLQNSI---GFKNE---LDIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAF 147 (286)
Q Consensus 75 k~y~~~yr~l~~~L---gL~~~---~~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAl 147 (286)
..|...|..|.... .++++ |+.++||.+||+|. .++.|...|.. .++.....|++..+--.++.....-.
T Consensus 13 ~~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~---~G~i~~~~g~G~~V~~~~~~~~~~~~ 89 (125)
T 3neu_A 13 PIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELER---AGYIYAKRGMGSFVTSDKALFDQLKK 89 (125)
T ss_dssp CHHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHH---TTSEEEETTTEEEECCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH---CCeEEEecCCEEEEecCchhhHHHHH
Confidence 45777777777654 34333 47999999999999 88888777764 54444445555544222221111111
Q ss_pred HHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 023151 148 YLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMK 182 (286)
Q Consensus 148 Y~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~ 182 (286)
+.. +. .--.-..-+...|+++.++..+..++.
T Consensus 90 ~~~-~~--~le~~~~~~~~~g~~~~ei~~l~~~~~ 121 (125)
T 3neu_A 90 ELA-DA--ITERFLEEAKSIGLDDQTAIELLIKRS 121 (125)
T ss_dssp HHH-HH--HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHH-HH--HHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 100 00 001112345567999999988888763
No 56
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=69.63 E-value=26 Score=25.98 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Q 023151 57 FDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGF 90 (286)
Q Consensus 57 ~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL 90 (286)
...+++++++++..|+++..+.+.++ ...|+
T Consensus 15 ~~~~~~~~~lA~~~~~s~~~l~r~fk---~~~G~ 45 (108)
T 3mn2_A 15 WMRPITIEKLTALTGISSRGIFKAFQ---RSRGY 45 (108)
T ss_dssp TTSCCCHHHHHHHHTCCHHHHHHHHH---HHTSS
T ss_pred ccCCCCHHHHHHHHCCCHHHHHHHHH---HHhCc
Confidence 45678999999999998887765544 45554
No 57
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=69.53 E-value=4.3 Score=30.43 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCC
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGC 105 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~ 105 (286)
...+..+|++..|++.+.+..-++.+.+.||++....+-.+|.+.|+
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r~~lv~~a~~~gl 89 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGV 89 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHTC---
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCC
Confidence 34689999999999999999999999999999877666666666554
No 58
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=68.83 E-value=8.3 Score=32.60 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
..++||.+||+..|+|+.|+.+..++|.+ .|+-...
T Consensus 175 ~~~~t~~~iA~~lG~sr~tvsR~l~~L~~-----~g~I~~~ 210 (250)
T 3e6c_C 175 TMPLSQKSIGEITGVHHVTVSRVLASLKR-----ENILDKK 210 (250)
T ss_dssp ECCCCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEC
T ss_pred cCCCCHHHHHHHhCCcHHHHHHHHHHHHH-----CCCeEeC
Confidence 46889999999999999999999999987 6655443
No 59
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=68.66 E-value=6.4 Score=32.38 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=31.3
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
...++||.+||...|+|+.|+.+..++|.+ .|+-...
T Consensus 175 ~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~-----~g~I~~~ 211 (227)
T 3dkw_A 175 VEIPVAKQLVAGHLSIQPETFSRIMHRLGD-----EGIIHLD 211 (227)
T ss_dssp CCCCSCTHHHHHHTTSCHHHHHHHHHHHHH-----HTSEEES
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHH-----CCcEEec
Confidence 356789999999999999999999999987 6665443
No 60
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=68.58 E-value=7.7 Score=31.63 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=29.0
Q ss_pred HHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 151 AKKHKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 151 ~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
....+-+++-.+||+..|+|+.|++++.+.|++
T Consensus 11 ~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 11 ILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEE 43 (162)
T ss_dssp HHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344566789999999999999999999999988
No 61
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=67.91 E-value=4.4 Score=32.87 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
.++||.+||+..|+|+.|+.+..++|.+
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 190 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEE 190 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999987
No 62
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=67.82 E-value=11 Score=25.82 Aligned_cols=46 Identities=17% Similarity=0.075 Sum_probs=37.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCC
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGC 105 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~ 105 (286)
..+..+|++..|++...+.+.++.+.+.||.+....+-.++.+.|+
T Consensus 26 g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~~~~~g~ 71 (74)
T 1fse_A 26 DKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMGE 71 (74)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhCC
Confidence 3489999999999999999999999999998766555556666654
No 63
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=67.53 E-value=4.1 Score=27.06 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
..+||.++|+.+|+++.||.+...
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 458999999999999999988654
No 64
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=67.07 E-value=5.9 Score=32.79 Aligned_cols=29 Identities=7% Similarity=0.181 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..++||.+||+..|+|+.|+.+..++|.+
T Consensus 175 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~ 203 (227)
T 3d0s_A 175 THDLTQEEIAQLVGASRETVNKALADFAH 203 (227)
T ss_dssp ECCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 35789999999999999999999999987
No 65
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=67.00 E-value=20 Score=27.23 Aligned_cols=52 Identities=10% Similarity=0.021 Sum_probs=36.9
Q ss_pred CChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 137 FSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 137 ~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
++++.+.. ++.-...-+..+++.+|++..|+++.|+....+.|++ .|+-...
T Consensus 32 lt~~~~~i--L~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~-----~Gli~r~ 83 (141)
T 3bro_A 32 LTGTQMTI--IDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI-----KKLLYRK 83 (141)
T ss_dssp CCHHHHHH--HHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCHHHHHH--HHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH-----CCCEEee
Confidence 45665542 2223333333799999999999999999999999987 5555544
No 66
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=66.95 E-value=17 Score=27.96 Aligned_cols=30 Identities=0% Similarity=-0.048 Sum_probs=27.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
.+..++..+||+..|+++.|++...+.|++
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~ 57 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEE 57 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 466799999999999999999999999987
No 67
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=66.78 E-value=5.8 Score=32.94 Aligned_cols=35 Identities=11% Similarity=0.173 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
..++||.+||...|+|+.|+.+..++|.+ .|+-..
T Consensus 173 ~~~~t~~~iA~~lg~sr~tvsR~l~~L~~-----~g~I~~ 207 (231)
T 3e97_A 173 VLPLGTQDIMARTSSSRETVSRVLKRLEA-----HNILEV 207 (231)
T ss_dssp EECCCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEE
T ss_pred ecCCCHHHHHHHhCCcHHHHHHHHHHHHH-----CCcEEe
Confidence 35789999999999999999999999987 665443
No 68
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=66.77 E-value=4.3 Score=28.11 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
..||.+||+.+||++.||.+....
T Consensus 21 glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 21 GKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 579999999999999999987754
No 69
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=66.67 E-value=8.6 Score=29.62 Aligned_cols=52 Identities=8% Similarity=0.079 Sum_probs=36.8
Q ss_pred CCCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 135 ADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 135 ~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
.+++++.+..-. ....+. +++.+||+..|+++.|+....+.|++ .|+-....
T Consensus 34 ~~lt~~~~~iL~----~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~-----~Glv~r~~ 85 (146)
T 3tgn_A 34 VALTNTQEHILM----LLSEES-LTNSELARRLNVSQAAVTKAIKSLVK-----EGMLETSK 85 (146)
T ss_dssp SCCCHHHHHHHH----HHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEC--
T ss_pred cCCCHHHHHHHH----HHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCeEecc
Confidence 455666654322 222233 99999999999999999999999987 66665554
No 70
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=66.65 E-value=5.9 Score=32.43 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
.++||.+||+..|+|+.|+.+..++|.+ .|+-..
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~-----~g~I~~ 201 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQV-----EGLVKL 201 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEE
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHH-----CCCEEe
Confidence 5899999999999999999999999987 665443
No 71
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=66.46 E-value=4.4 Score=27.24 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
..+||.++|+.+||++.||.+...
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 457999999999999999988654
No 72
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=66.35 E-value=5.1 Score=32.60 Aligned_cols=28 Identities=14% Similarity=0.389 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
.++||.+||+..|+|+.|+.+..++|.+
T Consensus 166 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 193 (210)
T 3ryp_A 166 IKITRQEIGQIVGCSRETVGRILKMLED 193 (210)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred eccCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999999987
No 73
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=66.31 E-value=5.4 Score=31.26 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..||++||+..|+|..||.+.-+.+..
T Consensus 58 e~TQREIA~~lGiS~stISRi~r~L~~ 84 (101)
T 1jhg_A 58 EMSQRELKNELGAGIATITRGSNSLKA 84 (101)
T ss_dssp CSCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhhhHHHHHHHH
Confidence 499999999999999999999666643
No 74
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=66.10 E-value=4.6 Score=27.01 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
.+||.++|+.+|+++.||.+...
T Consensus 18 g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 18 KIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 57999999999999999987654
No 75
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=65.59 E-value=4.4 Score=30.32 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
....||.+||+.+||++.||.++.+.
T Consensus 35 ~~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 35 DRDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 34679999999999999999987764
No 76
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=65.49 E-value=6.5 Score=32.64 Aligned_cols=35 Identities=6% Similarity=0.033 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
..++||.+||+..|+|+.|+.+..++|.+ .|+-..
T Consensus 178 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~-----~g~I~~ 212 (232)
T 2gau_A 178 SIYLSREELATLSNMTVSNAIRTLSTFVS-----ERMLAL 212 (232)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHH-----TTSEEE
T ss_pred EcccCHHHHHHHhCCCHHHHHHHHHHHHH-----CCCEee
Confidence 46789999999999999999999999987 665443
No 77
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=65.32 E-value=7.7 Score=30.25 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=22.8
Q ss_pred hCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 153 KHKLKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 153 ~~k~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
......||.++|+..||++.||.+...
T Consensus 80 R~~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 80 RKKLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HHHTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 445679999999999999999987654
No 78
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=64.96 E-value=6.2 Score=29.16 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
|-.+|-.+||+..|||+.|+|.-...|++
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~ 50 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHD 50 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788999999999999999999999966
No 79
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=64.81 E-value=11 Score=28.73 Aligned_cols=63 Identities=16% Similarity=0.019 Sum_probs=47.0
Q ss_pred CCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCc
Q 023151 38 IGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCI 106 (286)
Q Consensus 38 ~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~s 106 (286)
...+..-.-+..++ + ...+.+||++..|++...+..-+..+.+.||++...-+-.+|.+.|+.
T Consensus 33 ~~Lt~re~~Vl~l~--~----~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~elv~~a~~~gli 95 (99)
T 1p4w_A 33 KRLSPKESEVLRLF--A----EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSMT 95 (99)
T ss_dssp SSCCHHHHHHHHHH--H----HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTCS
T ss_pred CCCCHHHHHHHHHH--H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCCC
Confidence 34455555554442 2 246889999999999999999999999999998776666677776654
No 80
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=64.71 E-value=16 Score=28.50 Aligned_cols=43 Identities=2% Similarity=-0.078 Sum_probs=35.2
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
.|+...+-+|-+| +-...||.+||+..|+|..++.++.+.-.+
T Consensus 18 ~~~~~~~~~A~ly-----Yv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~ 60 (101)
T 2w7n_A 18 EVGQQTIEIARGV-----LVDGKPQATFATSLGLTRGAVSQAVHRVWA 60 (101)
T ss_dssp CCCHHHHHHHHHH-----HTTCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH-----HHcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4567777777777 456789999999999999999998887654
No 81
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=64.68 E-value=7.3 Score=30.93 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=39.1
Q ss_pred CChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccCCh
Q 023151 137 FSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKKDP 198 (286)
Q Consensus 137 ~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~~~ 198 (286)
++++.|..-. .-....+-.+++.+||+..++++.|+....+.|++ -|+-....+|
T Consensus 33 Lt~~q~~vL~--~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~-----~Glv~r~~~~ 87 (147)
T 4b8x_A 33 LTFARYEALV--LLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR-----SGLVAKRPNP 87 (147)
T ss_dssp CCHHHHHHHH--HHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEEECC
T ss_pred CCHHHHHHHH--HHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh-----CCCEEEeecC
Confidence 4677665432 22222344689999999999999999999999987 5666555443
No 82
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=64.64 E-value=6.7 Score=32.48 Aligned_cols=35 Identities=9% Similarity=0.161 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
..++||.+||+..|+|+.|+.+..++|.+ .|+-..
T Consensus 161 ~~~~t~~~lA~~lG~sr~tvsR~l~~L~~-----~g~I~~ 195 (222)
T 1ft9_A 161 SVDFTVEEIANLIGSSRQTTSTALNSLIK-----EGYISR 195 (222)
T ss_dssp EECCCHHHHHHHHCSCHHHHHHHHHHHHH-----TTSSEE
T ss_pred eccCCHHHHHHHhCCcHHHHHHHHHHHHH-----CCcEEE
Confidence 35689999999999999999999999987 665443
No 83
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=64.62 E-value=11 Score=29.95 Aligned_cols=37 Identities=8% Similarity=0.051 Sum_probs=31.1
Q ss_pred hCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 153 KHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 153 ~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
..+-+.+..+||+..|+++.|++++.+.|++ .|+-..
T Consensus 13 ~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~-----~G~i~~ 49 (150)
T 2pn6_A 13 QYNAKYSLDEIAREIRIPKATLSYRIKKLEK-----DGVIKG 49 (150)
T ss_dssp TTCTTSCHHHHHHHHTSCHHHHHHHHHHHHH-----TTSSCC
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH-----CCcEEE
Confidence 3455799999999999999999999999988 565544
No 84
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=64.59 E-value=16 Score=26.37 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
+..++..+||+..|+++.|+.+..+.|++ .|+-...
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~-----~g~v~~~ 69 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIE-----LGLVVRT 69 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCeEee
Confidence 56799999999999999999999999977 5555544
No 85
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=64.45 E-value=5.1 Score=27.10 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
..+||.++|+.+||++.||.+...
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 457999999999999999987654
No 86
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=64.36 E-value=4.8 Score=28.48 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
...||.++|+.+||++.||.+..+.
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4589999999999999999887543
No 87
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=64.15 E-value=9 Score=30.46 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
.+-+.+..+||+..|+|+.|++++.+.|++
T Consensus 20 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 20 ENSRLTYRELADILNTTRQRIARRIDKLKK 49 (151)
T ss_dssp HCTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345789999999999999999999999987
No 88
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=64.10 E-value=9.8 Score=26.58 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=21.7
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
.....||.++|+.+||++.||.+...
T Consensus 20 ~~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 20 KEASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 33468999999999999999987664
No 89
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=64.07 E-value=6.2 Score=28.54 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVS 178 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ 178 (286)
+...|+.+||+.+||++.||.+..
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 556899999999999999999763
No 90
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=63.97 E-value=9.3 Score=30.48 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=30.4
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
.+...+..+||+..|+|+.|++++.+.|++ .|+-..
T Consensus 19 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~-----~G~i~~ 54 (152)
T 2cg4_A 19 GNARTAYAELAKQFGVSPETIHVRVEKMKQ-----AGIITG 54 (152)
T ss_dssp HCTTSCHHHHHHHHTSCHHHHHHHHHHHHH-----HTSEEE
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH-----cCCcce
Confidence 345789999999999999999999999987 555543
No 91
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=63.95 E-value=9.1 Score=34.60 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=32.8
Q ss_pred hCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccc-ccC
Q 023151 153 KHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAK-EKK 196 (286)
Q Consensus 153 ~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~-~~~ 196 (286)
.....++|.+||+..|||+.|||+..+.+++ .|+-+ ...
T Consensus 17 ~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~-----~G~v~iri~ 56 (315)
T 2w48_A 17 YYEQDMTQAQIARELGIYRTTISRLLKRGRE-----QGIVTIAIN 56 (315)
T ss_dssp HHTSCCCHHHHHHHTTCCHHHHHHHHHHHHH-----TTSEEEEEC
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH-----CCcEEEEec
Confidence 4456699999999999999999999999988 67765 443
No 92
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=63.93 E-value=6.1 Score=27.29 Aligned_cols=25 Identities=4% Similarity=0.165 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
....||.+||+.+||++.||.+...
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3458999999999999999988764
No 93
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=63.83 E-value=6 Score=32.25 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..++||.+||+..|+|+.|+.+..++|.+
T Consensus 144 ~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 172 (202)
T 2zcw_A 144 VLKATHDELAAAVGSVRETVTKVIGELAR 172 (202)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999987
No 94
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=63.83 E-value=5.9 Score=32.35 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
.++||.+||+..|+|+.|+.+..++|.+ .|+-..
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~-----~g~I~~ 195 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAE-----EGVVRL 195 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHH-----TTSEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH-----CCCEEe
Confidence 5689999999999999999999999987 665543
No 95
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=63.63 E-value=13 Score=27.20 Aligned_cols=61 Identities=7% Similarity=0.044 Sum_probs=46.9
Q ss_pred CcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCC
Q 023151 39 GVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGC 105 (286)
Q Consensus 39 Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~ 105 (286)
+.+..-.-+..++ .. ..+..+|++..|++...+.+-+..+.+.|+.+....+-.+|.+.|+
T Consensus 29 ~Lt~~e~~vl~l~----~~--g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~~a~~~gl 89 (91)
T 2rnj_A 29 MLTEREMEILLLI----AK--GYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNL 89 (91)
T ss_dssp GCCSHHHHHHHHH----HT--TCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHH----Hc--CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCC
Confidence 3445555555443 22 4788999999999999999999999999999887767777777775
No 96
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=63.20 E-value=5.5 Score=27.44 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
....||.++|+.+||++.||.+...
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 21 QKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 3458999999999999999988764
No 97
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=62.91 E-value=32 Score=27.17 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=30.9
Q ss_pred CChhHHHHHHHHHHHH---hCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 137 FSRPVFTAVAFYLCAK---KHKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 137 ~~pp~~AAAAlY~A~~---~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
+++++|.. ++.-.. ..+..+|+.+||+..|+++.|+....+.|++
T Consensus 31 Lt~~q~~v--L~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~ 78 (148)
T 4fx0_A 31 LTNTQFST--LAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRR 78 (148)
T ss_dssp CCHHHHHH--HHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHH--HHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 46777653 222222 2345689999999999999999999999987
No 98
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=62.89 E-value=3.6 Score=29.07 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
....||.++|+.+||++.||.+...
T Consensus 22 ~~gltq~elA~~~gvs~~tis~~E~ 46 (73)
T 3fmy_A 22 KLSLTQKEASEIFGGGVNAFSRYEK 46 (73)
T ss_dssp HTTCCHHHHHHHHCSCTTHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 3468999999999999999888654
No 99
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=62.88 E-value=12 Score=27.53 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=36.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~s~ 107 (286)
.++..++++..|++...+.+.+..+++--..+..-.+.+||..|||+.
T Consensus 14 glsq~~lA~~~gis~~~~~~~is~~E~g~~~p~~~~l~~la~~l~v~~ 61 (98)
T 3lfp_A 14 GISQEKLGVLAGIDEASASARMNQYEKGKHAPDFEMANRLAKVLKIPV 61 (98)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHTSCG
T ss_pred CCCHHHHHHHhCCCcchhhhHHHHHHCCCCCCCHHHHHHHHHHHCcCH
Confidence 357899999999999987777777777543222236889999999986
No 100
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=62.74 E-value=5.7 Score=27.28 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
..+||.++|+.+||++.||.+...
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 468999999999999999987654
No 101
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=62.64 E-value=10 Score=30.03 Aligned_cols=29 Identities=7% Similarity=0.001 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
+-+.+..+||+..|+|+.|++++.+.|++
T Consensus 17 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 17 DSRLSMRELGRKIKLSPPSVTERVRQLES 45 (144)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45689999999999999999999999987
No 102
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=62.39 E-value=5.8 Score=28.33 Aligned_cols=22 Identities=5% Similarity=-0.085 Sum_probs=19.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVS 178 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ 178 (286)
.+|+.+||+.+||+..|+.+..
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~l 30 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRAL 30 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHH
Confidence 5899999999999999998754
No 103
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=62.35 E-value=5.7 Score=27.82 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=20.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
.+||.+||+.+||+..||.+...
T Consensus 15 glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 15 SLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc
Confidence 58999999999999999987664
No 104
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=62.35 E-value=5.8 Score=32.25 Aligned_cols=28 Identities=7% Similarity=0.219 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
.++||.+||+..|+|+.|+.+..++|.+
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 165 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRR 165 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999987
No 105
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=62.02 E-value=5.8 Score=28.22 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
..+||.+||+.+||+..+|.++.+.
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3479999999999999999987654
No 106
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=62.02 E-value=6.7 Score=32.34 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
.++||.+||+..|+|+.|+.+..++|.+ .|+-..
T Consensus 186 ~~lt~~~lA~~lg~sr~tvsR~l~~L~~-----~g~I~~ 219 (230)
T 3iwz_A 186 LRVSRQELARLVGCSREMAGRVLKKLQA-----DGLLHA 219 (230)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEE
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHH-----CCCEEE
Confidence 4689999999999999999999999987 665443
No 107
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=61.92 E-value=11 Score=30.15 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
+-..+..+||+..|+|+.|++++.+.|++
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 19 DGKAPLREISKITGLAESTIHERIRKLRE 47 (151)
T ss_dssp CTTCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44789999999999999999999999987
No 108
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=61.89 E-value=5.4 Score=27.51 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=19.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHH
Q 023151 158 VDKLKLIEVCGTSETEFASVS 178 (286)
Q Consensus 158 vtQ~kla~~sgvt~vt~rnr~ 178 (286)
.||.+||+.+|||+.+|.+..
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 499999999999999998874
No 109
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=61.59 E-value=5 Score=35.64 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC-CCCCCcHHHHHHHhCCcc---hHHHHHHHHHHHH
Q 023151 45 KAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIG-FKNELDIRELGIRFGCIR---LIPLVQKGLSLFK 120 (286)
Q Consensus 45 ~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~Lg-L~~~~~I~~ia~qlg~s~---v~~~A~eiL~~~k 120 (286)
.+=|.||+ .|-|+++++++++.+++...+..++..|...+. -..++-|.+++.-+-+-. ......+++.
T Consensus 19 ~iEAlLf~----a~epvs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~T~~e~~~~v~~~~~--- 91 (219)
T 2z99_A 19 VLEALLLV----IDTPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTRARFAPYVEKLLL--- 91 (219)
T ss_dssp HHHHHHHH----CSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECGGGHHHHHHHHH---
T ss_pred HHHHHHHH----cCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhc---
Confidence 33444554 488999999999999999999999999998873 123333333333222221 2222222221
Q ss_pred HhhhhccccccccCCCCChhHHHHHHH-HHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 121 DRFTAALPASRKTSADFSRPVFTAVAF-YLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 121 e~~~~~L~~gk~~~~D~~pp~~AAAAl-Y~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
. .+ ++-+.-|++ -+|..-.+..+|+.+|.++.||+. .++.+++.+
T Consensus 92 -~-------~~-------~~~Ls~aaLEtLaiIAy~QPITR~eI~~irGv~~---~~~v~~Lle 137 (219)
T 2z99_A 92 -D-------GA-------RTKLTRAALETLAVVAYRQPVTRARVSAVRGVNV---DAVMRTLLA 137 (219)
T ss_dssp -H-------HH-------SCCCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCC---HHHHHHHHH
T ss_pred -c-------cc-------cCccCHHHHHHHHHHHHcCCcCHHHHHHHHCCCH---HHHHHHHHH
Confidence 1 11 111222443 345555668999999999999996 577777765
No 110
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=61.46 E-value=7.5 Score=27.55 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
...+||.+||+.+||++.||.+....
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 34589999999999999999988764
No 111
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=61.45 E-value=15 Score=26.52 Aligned_cols=60 Identities=7% Similarity=0.022 Sum_probs=43.5
Q ss_pred cchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCC
Q 023151 40 VGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGC 105 (286)
Q Consensus 40 rs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~ 105 (286)
.+..-.-+..++ . ...+.++|++..|++...+.+-++.+.+.|+......+-.+|.+.|+
T Consensus 22 Lt~~e~~vl~l~----~--~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~~a~~~gl 81 (82)
T 1je8_A 22 LTPRERDILKLI----A--QGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERI 81 (82)
T ss_dssp SCHHHHHHHHHH----T--TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHH----H--cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 344444444443 2 34799999999999999999999999999998766555556665553
No 112
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=61.33 E-value=7.7 Score=26.29 Aligned_cols=25 Identities=8% Similarity=-0.132 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhC--CCHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCG--TSETEFASVSTT 180 (286)
Q Consensus 156 ~kvtQ~kla~~sg--vt~vt~rnr~ke 180 (286)
...||.++|+.+| +++.++.+....
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 4589999999999 999999887653
No 113
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=61.32 E-value=6.2 Score=27.04 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
..||.++|+.+|+++.||.+...
T Consensus 18 gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 18 KIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc
Confidence 57999999999999999988764
No 114
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=61.32 E-value=7.3 Score=32.44 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=30.2
Q ss_pred hCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhc
Q 023151 153 KHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGI 191 (286)
Q Consensus 153 ~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i 191 (286)
....+.||.+||...|+|+.|+.+..++|.+ .||
T Consensus 174 ~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~-----~gi 207 (237)
T 3fx3_A 174 EVTLPYDKMLIAGRLGMKPESLSRAFSRLKA-----AGV 207 (237)
T ss_dssp EEECCSCTHHHHHHTTCCHHHHHHHHHHHGG-----GTE
T ss_pred EEEecCCHHHHHHHhCCCHHHHHHHHHHHHH-----CCe
Confidence 3456789999999999999999999999987 677
No 115
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=61.21 E-value=6.4 Score=26.80 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
....||.++|+.+||++.++.+...
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3468999999999999999988654
No 116
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=60.82 E-value=6.3 Score=27.77 Aligned_cols=26 Identities=8% Similarity=0.049 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
....||.++|+.+||++.|+.+....
T Consensus 22 ~~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 22 EKGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 34689999999999999999887653
No 117
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=60.73 E-value=7 Score=32.74 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..++||.+||+..|+|+.|+.+..++|.+
T Consensus 184 ~~~~t~~~lA~~lG~sr~tvsR~l~~l~~ 212 (232)
T 1zyb_A 184 TFKVKMDDLARCLDDTRLNISKTLNELQD 212 (232)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHhCCChhHHHHHHHHHHH
Confidence 35789999999999999999999999987
No 118
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=60.39 E-value=14 Score=26.39 Aligned_cols=27 Identities=4% Similarity=-0.012 Sum_probs=25.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
.++..+||+..|+++.|++...+.|++
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~L~~ 40 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLLLEK 40 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 589999999999999999999999987
No 119
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=60.26 E-value=12 Score=29.12 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=26.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
+.+.+..+||+..|+|+.|++++.+.|++
T Consensus 16 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 16 DARTPFTEIAKKLGISETAVRKRVKALEE 44 (141)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45689999999999999999999999987
No 120
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=59.52 E-value=6.7 Score=27.62 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
...||.++|+.+||++.|+.+....
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~g 50 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTENA 50 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4589999999999999999887653
No 121
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=59.09 E-value=53 Score=24.48 Aligned_cols=53 Identities=15% Similarity=0.239 Sum_probs=34.4
Q ss_pred hCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC-------------------CCCcHHHHHHHhCCcchHHH
Q 023151 56 RFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFK-------------------NELDIRELGIRFGCIRLIPL 111 (286)
Q Consensus 56 ~~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~-------------------~~~~I~~ia~qlg~s~v~~~ 111 (286)
....+++++++++..|+++..+.+.++ ...|+. ...+|.+||.++|-+.....
T Consensus 19 ~~~~~~~~~~lA~~~~~S~~~l~r~fk---~~~G~s~~~~~~~~Rl~~A~~lL~~~~~~i~eIA~~~Gf~~~s~F 90 (113)
T 3oio_A 19 NIEEPLSTDDIAYYVGVSRRQLERLFK---QYLGTVPSKYYLELRLNRARQLLQQTSKSIVQIGLACGFSSGPHF 90 (113)
T ss_dssp CSSSCCCHHHHHHHHTSCHHHHHHHHH---HHTSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHH
T ss_pred hhcCCCCHHHHHHHHCcCHHHHHHHHH---HHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHH
Confidence 345567888888888887776655444 333332 23478888888888875443
No 122
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=58.98 E-value=11 Score=27.46 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=24.1
Q ss_pred HHhCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 151 AKKHKLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 151 ~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
.......+||.+||+.+||++.||.+....
T Consensus 16 ~~r~~~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 16 SYIAKSEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp HHHTTSSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 344555789999999999999999887643
No 123
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=58.96 E-value=12 Score=30.09 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
+-+.+..+||+..|+|+.|++++.+.|++
T Consensus 22 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 22 NGRLTNVELSERVALSPSPCLRRLKQLED 50 (162)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44689999999999999999999999987
No 124
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=58.94 E-value=3.3 Score=26.24 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=20.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 023151 158 VDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 158 vtQ~kla~~sgvt~vt~rnr~ke 180 (286)
.+..+||+..||+..||.+..+.
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Confidence 79999999999999999887654
No 125
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=58.80 E-value=6.6 Score=30.19 Aligned_cols=26 Identities=8% Similarity=0.201 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
.....||.+||+.+||+..||.++.+
T Consensus 46 ~~~glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 46 LNRDLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHcCCCHHHHHHHHC
Confidence 34569999999999999999988764
No 126
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=58.73 E-value=8.5 Score=30.47 Aligned_cols=36 Identities=6% Similarity=0.036 Sum_probs=30.6
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKV-DKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kv-tQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
|.++ +.++||+..|||..|+|.-+..|+. .|+-...
T Consensus 35 G~~LPser~La~~~gVSr~tVReAl~~L~~-----eGlv~~~ 71 (134)
T 4ham_A 35 GEKILSIREFASRIGVNPNTVSKAYQELER-----QEVIITV 71 (134)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCCccHHHHHHHHCCCHHHHHHHHHHHHH-----CCcEEEE
Confidence 4566 7889999999999999999999988 7766554
No 127
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=58.66 E-value=12 Score=30.86 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=27.5
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
.+-+.+..+||+..|+|+.|++++.+.|++
T Consensus 28 ~~~~~s~~eLA~~lglS~~tv~~~l~~L~~ 57 (171)
T 2ia0_A 28 KDARLTISELSEQLKKPESTIHFRIKKLQE 57 (171)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345799999999999999999999999987
No 128
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=58.66 E-value=9.4 Score=27.81 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=25.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..|..+||+..||+..|++++...|++
T Consensus 31 ~~t~~eLA~~Lgvs~~tV~~~L~~L~~ 57 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPKKEINRVLYSLAK 57 (77)
T ss_dssp CEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478899999999999999999999976
No 129
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=58.61 E-value=24 Score=27.03 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
+..+++.+|++..|+++.|+....+.|++ .|+-...
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~-----~glv~r~ 83 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELER-----GGLIVRH 83 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHH-----CCCEeeC
Confidence 56799999999999999999999999987 5555544
No 130
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=58.46 E-value=12 Score=30.89 Aligned_cols=29 Identities=10% Similarity=0.192 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
+-+.+..+||+..|+|+.|++++.+.|++
T Consensus 39 ~~~~s~~eLA~~lglS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 39 DGKAPLREISKITGLAESTIHERIRKLRE 67 (171)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45799999999999999999999999987
No 131
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=58.43 E-value=15 Score=29.33 Aligned_cols=57 Identities=7% Similarity=0.281 Sum_probs=40.7
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccCChhh
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKKDPRE 200 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~~~~~ 200 (286)
++++++|.. ++.-. ..+...+|.+||+..|+++.|+....+.|++ -|+-....+|..
T Consensus 28 gLt~~q~~v--L~~L~-~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~-----~GlV~R~~~~~D 84 (151)
T 4aik_A 28 ELTQTHWVT--LYNIN-RLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE-----KGLITRHTSAND 84 (151)
T ss_dssp CCCHHHHHH--HHHHH-HSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH-----TTSEEEEECSSC
T ss_pred CCCHHHHHH--HHHHH-HcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh-----CCCeEeecCCCC
Confidence 356777643 22222 3567789999999999999999999999987 566655544433
No 132
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=58.30 E-value=7.2 Score=28.20 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=23.0
Q ss_pred hCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 153 KHKLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 153 ~~k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
......||.++|+.+||++.||.++...
T Consensus 23 R~~~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 23 RLDAGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 3445689999999999999999887643
No 133
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=57.88 E-value=18 Score=26.85 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=38.4
Q ss_pred cchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCC
Q 023151 40 VGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGC 105 (286)
Q Consensus 40 rs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~ 105 (286)
.+..-.-+..++ .. ..+.++|++..|++...+.+-++.+.+.|+......+-.+|.+.|+
T Consensus 28 Lt~~e~~vl~l~----~~--g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~~~a~~~gl 87 (95)
T 3c57_A 28 LTDQERTLLGLL----SE--GLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKR 87 (95)
T ss_dssp CCHHHHHHHHHH----HT--TCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC----------
T ss_pred CCHHHHHHHHHH----Hc--CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 345555554443 23 3688999999999999999999999999999877666666666655
No 134
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=57.79 E-value=23 Score=26.85 Aligned_cols=36 Identities=8% Similarity=0.172 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
+...+..+||+..|+++.|+....+.|++ .|+-...
T Consensus 39 ~~~~t~~ela~~l~~~~stvs~~l~~L~~-----~G~v~r~ 74 (152)
T 1ku9_A 39 DKPLTISDIMEELKISKGNVSMSLKKLEE-----LGFVRKV 74 (152)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCEEEE
Confidence 45799999999999999999999999987 6665554
No 135
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=57.74 E-value=14 Score=29.36 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
+-..+..+||+..|+++.|++++.+.|++ .|+-..
T Consensus 19 ~~~~s~~ela~~lg~s~~tv~~~l~~L~~-----~G~i~~ 53 (150)
T 2w25_A 19 DGRATLSELATRAGLSVSAVQSRVRRLES-----RGVVQG 53 (150)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHH-----TTSEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCEEE
Confidence 45799999999999999999999999987 555543
No 136
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=57.65 E-value=28 Score=26.39 Aligned_cols=53 Identities=13% Similarity=0.268 Sum_probs=38.1
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
+++++.+..-.+ +. ..+..+++.+|++..|+++.|+....+.|++ .|+-....
T Consensus 34 ~l~~~~~~iL~~-l~--~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~-----~glv~r~~ 86 (146)
T 2fbh_A 34 GLSQARWLVLLH-LA--RHRDSPTQRELAQSVGVEGPTLARLLDGLES-----QGLVRRLA 86 (146)
T ss_dssp CCTTTHHHHHHH-HH--HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEEC
T ss_pred CCCHHHHHHHHH-HH--HcCCCCCHHHHHHHhCCChhhHHHHHHHHHH-----CCCeeecC
Confidence 346666543221 10 2566899999999999999999999999987 56555543
No 137
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=57.64 E-value=7.8 Score=25.44 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=20.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
..++.+||+..|+++.||.+..+
T Consensus 31 g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 31 GYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH
Confidence 45999999999999999998753
No 138
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=57.48 E-value=12 Score=26.98 Aligned_cols=29 Identities=7% Similarity=0.038 Sum_probs=24.0
Q ss_pred HhCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 152 KKHKLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 152 ~~~k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
......+||.+||+.+||++.||.++...
T Consensus 21 ~r~~~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 21 GRQSKGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp HHHTTTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 34455789999999999999999887764
No 139
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=57.46 E-value=8.6 Score=27.10 Aligned_cols=22 Identities=9% Similarity=0.111 Sum_probs=20.4
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 023151 159 DKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 159 tQ~kla~~sgvt~vt~rnr~ke 180 (286)
||.+||+.+||++.||.+..+.
T Consensus 13 sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHC
Confidence 9999999999999999998765
No 140
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=57.45 E-value=9.4 Score=27.72 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=21.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
.+||.++|+.+||++.||.+..+.
T Consensus 21 gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 21 NVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 589999999999999999887653
No 141
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=57.18 E-value=8.7 Score=32.97 Aligned_cols=34 Identities=12% Similarity=0.320 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
.++||.+||...|+|+.|+.+..++|.+ .|+-..
T Consensus 216 l~lt~~~lA~~lG~sr~tvsR~l~~L~~-----~GlI~~ 249 (260)
T 3kcc_A 216 IKITRQEIGQIVGCSRETVGRILKMLED-----QNLISA 249 (260)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEE
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHH-----CCCEEE
Confidence 4789999999999999999999999987 665443
No 142
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=57.16 E-value=30 Score=26.14 Aligned_cols=72 Identities=8% Similarity=-0.022 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHh-CCCHHHHHHHHHHHHHHhCC
Q 023151 17 QLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLS-GMSEKAYNRSFNSLQNSIGF 90 (286)
Q Consensus 17 ~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~s-g~~~k~y~~~yr~l~~~LgL 90 (286)
.|++..|++|........+-.+.+.+.--=-+|+|+|-...+ .++.+|.+.+ |-+.+.+..+++.+++.+.-
T Consensus 5 ~I~~~Va~~f~i~~~dl~s~~R~~~i~~aRqiamyL~r~~t~--~Sl~~IG~~fggrdHsTV~ha~~ki~~~~~~ 77 (94)
T 1j1v_A 5 NIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTN--HSLPEIGDAFGGRDHTTVLHACRKIEQLREE 77 (94)
T ss_dssp HHHHHHHHHTTCCHHHHHSCCCCHHHHHHHHHHHHHHHHHSC--CCHHHHHHHTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHhCCCCCchhHHHHHHHHHHHHHHHC--cCHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 678888888887766532323333333333477888777664 5789999999 78999999999999998753
No 143
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=57.03 E-value=38 Score=26.09 Aligned_cols=52 Identities=8% Similarity=0.198 Sum_probs=36.6
Q ss_pred CChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 137 FSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 137 ~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
++++.|..-. .- ...+..+++.+|++..++++.|+....+.|++ -|+-....
T Consensus 37 lt~~q~~vL~--~l-~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~-----~Glv~r~~ 88 (150)
T 3fm5_A 37 LRVRSYSVLV--LA-CEQAEGVNQRGVAATMGLDPSQIVGLVDELEE-----RGLVVRTL 88 (150)
T ss_dssp CCHHHHHHHH--HH-HHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT-----TTSEEC--
T ss_pred CCHHHHHHHH--HH-HhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH-----CCCEEeeC
Confidence 4566654332 11 13556789999999999999999999999977 55555443
No 144
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=56.93 E-value=7.7 Score=27.86 Aligned_cols=25 Identities=8% Similarity=0.189 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
...||.++|+.+||++.||.+....
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3689999999999999999887653
No 145
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=56.63 E-value=14 Score=28.57 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=31.1
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 138 SRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 138 ~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
++...--|-+.+.-...=...|=.+||+.+|||+.||-+.|+.|
T Consensus 16 t~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 16 TKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp CHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 34444444443433333356788999999999999999999987
No 146
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=56.61 E-value=32 Score=28.87 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=37.7
Q ss_pred CcchHHHHHHHHHHHHhhC----------CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 39 GVGEVCKAVICLELAASRF----------DVIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 39 Grs~~~~aaacLylAcr~~----------~iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
..+.....+..|..-+... .+|++.++++.+.|+++..+.+.++.|.+.
T Consensus 146 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~ 204 (250)
T 3e6c_C 146 TYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRE 204 (250)
T ss_dssp TSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 3566667666665555443 368899999999999999999999999875
No 147
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=56.50 E-value=29 Score=26.78 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 141 VFTAVAFYLCAKKH-KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 141 ~~AAAAlY~A~~~~-k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
.+|-.++..-+... +..++-.+||+..|+++.+++++...|.+ .|+-...
T Consensus 9 ~~al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~-----~Glv~~~ 59 (129)
T 2y75_A 9 RYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRN-----AGLVKSI 59 (129)
T ss_dssp HHHHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHH-----TTSEEEC
T ss_pred HHHHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHH-----CCceEec
Confidence 35555555555443 67899999999999999999999999987 6665554
No 148
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=56.41 E-value=9.4 Score=28.77 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=21.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
..||.++|+.+||++.|+.+....
T Consensus 22 glsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 22 GLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHcC
Confidence 579999999999999999988764
No 149
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=56.39 E-value=15 Score=24.75 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhh
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHD 187 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d 187 (286)
...+..+||+..|+|+.|++++.......+..
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999887654443
No 150
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=56.32 E-value=24 Score=27.05 Aligned_cols=52 Identities=2% Similarity=-0.001 Sum_probs=38.0
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
+++++.+..-. .-... ..+++.+||+..|+++.|+....+.|++ -|+-....
T Consensus 34 ~lt~~~~~iL~--~l~~~--~~~t~~eLa~~l~~~~~~vs~~l~~L~~-----~Glv~r~~ 85 (143)
T 3oop_A 34 DVTPEQWSVLE--GIEAN--EPISQKEIALWTKKDTPTVNRIVDVLLR-----KELIVREI 85 (143)
T ss_dssp SSCHHHHHHHH--HHHHH--SSEEHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEEC
T ss_pred CCCHHHHHHHH--HHHHc--CCcCHHHHHHHHCCCHhhHHHHHHHHHH-----CCCeeccC
Confidence 45677764432 22222 5789999999999999999999999987 56655544
No 151
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=55.85 E-value=9.3 Score=37.05 Aligned_cols=33 Identities=12% Similarity=0.148 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhh
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHD 187 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d 187 (286)
...++-.++|+...||+.|+.+-.+.+...+..
T Consensus 106 ~~~isi~~Lae~l~VS~sTi~~DLk~i~~~L~~ 138 (485)
T 3sqn_A 106 TKELVTTSFLSTSGVSYETLKRHIKKMNQALRD 138 (485)
T ss_dssp CSEEEHHHHHHHHTCCHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999876644
No 152
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=55.72 E-value=9.3 Score=32.11 Aligned_cols=29 Identities=14% Similarity=0.239 Sum_probs=26.9
Q ss_pred CC-CCCHHHHHHHhCCCH-HHHHHHHHHHHH
Q 023151 155 KL-KVDKLKLIEVCGTSE-TEFASVSTTMKD 183 (286)
Q Consensus 155 k~-kvtQ~kla~~sgvt~-vt~rnr~ke~~~ 183 (286)
.. ++||.+||+..|+|+ +|+.+..++|.+
T Consensus 166 ~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~ 196 (238)
T 2bgc_A 166 TLDNLTMQELGYSSGIAHSSAVSRIISKLKQ 196 (238)
T ss_dssp CCSCCCHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred EeccCCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 45 799999999999999 899999999987
No 153
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=55.63 E-value=13 Score=27.21 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=21.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMK 182 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~ 182 (286)
..||.++|+.+||++.|+.+.+..|+
T Consensus 14 glsq~~lA~~~gis~~~~~~~is~~E 39 (98)
T 3lfp_A 14 GISQEKLGVLAGIDEASASARMNQYE 39 (98)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCcchhhhHHHHHH
Confidence 57999999999999999666666664
No 154
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=55.23 E-value=18 Score=27.81 Aligned_cols=54 Identities=7% Similarity=0.084 Sum_probs=38.9
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
+++++.+..-. .-....+..+++.+||+..|+++.|+....+.|++ .|+-....
T Consensus 34 ~lt~~q~~vL~--~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~-----~Glv~r~~ 87 (127)
T 2frh_A 34 SISFEEFAVLT--YISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQ-----EDYFDKKR 87 (127)
T ss_dssp CCCHHHHHHHH--HHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHH-----TTSSCCBC
T ss_pred CCCHHHHHHHH--HHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEecC
Confidence 34677664322 22333336799999999999999999999999987 56655543
No 155
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=54.63 E-value=74 Score=24.79 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHh---CCCCC---CcHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhcccccccc
Q 023151 76 AYNRSFNSLQNSI---GFKNE---LDIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKT 133 (286)
Q Consensus 76 ~y~~~yr~l~~~L---gL~~~---~~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~ 133 (286)
-|.+-|..|.... .++++ |+.++||.+||+|. .++.|...|+. .++.....|++.
T Consensus 15 lY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~---eGlv~~~~g~G~ 76 (134)
T 4ham_A 15 IYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELER---QEVIITVKGKGT 76 (134)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHH---TTSEEEETTTEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHH---CCcEEEEcCcEE
Confidence 4677777766632 24443 48999999999999 99999888874 555444455544
No 156
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=54.56 E-value=10 Score=29.48 Aligned_cols=25 Identities=4% Similarity=0.123 Sum_probs=22.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
..|-.+||+.+||++.||-+.|+.|
T Consensus 39 ~~si~elA~~~~vS~aTv~Rf~kkl 63 (111)
T 2o3f_A 39 ESTVNEISALANSSDAAVIRLCXSL 63 (111)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred hcCHHHHHHHHCCCHHHHHHHHHHc
Confidence 4688999999999999999999876
No 157
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=54.48 E-value=27 Score=26.63 Aligned_cols=36 Identities=6% Similarity=0.056 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
+..+++.+||+..|+++.|+....+.|++ .|+-...
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~-----~glv~r~ 83 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEE-----MGLVVRV 83 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHH-----CCCEEee
Confidence 66799999999999999999999999987 4555444
No 158
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=54.34 E-value=8.9 Score=28.81 Aligned_cols=28 Identities=7% Similarity=0.055 Sum_probs=23.2
Q ss_pred hCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 153 KHKLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 153 ~~k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
......||.+||+.+||++.||.++...
T Consensus 37 R~~~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 37 RLEKGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 3445689999999999999999987654
No 159
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=53.85 E-value=9.3 Score=28.29 Aligned_cols=25 Identities=8% Similarity=0.004 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
....||.++|+.+||++.||.+...
T Consensus 41 ~~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 41 ALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 3468999999999999999987654
No 160
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=53.81 E-value=20 Score=26.82 Aligned_cols=38 Identities=3% Similarity=0.076 Sum_probs=31.8
Q ss_pred hCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 153 KHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 153 ~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
..|..++..+||+..||+..|++...+.|.+ .|+-...
T Consensus 29 ~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~-----~GlV~~~ 66 (110)
T 1q1h_A 29 DKGTEMTDEEIANQLNIKVNDVRKKLNLLEE-----QGFVSYR 66 (110)
T ss_dssp HHCSCBCHHHHHHTTTSCHHHHHHHHHHHHH-----HTSCEEE
T ss_pred HcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCEEEE
Confidence 3566799999999999999999999999987 6665443
No 161
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=53.50 E-value=12 Score=28.29 Aligned_cols=42 Identities=5% Similarity=0.068 Sum_probs=35.6
Q ss_pred HHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Q 023151 50 LELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFK 91 (286)
Q Consensus 50 LylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~ 91 (286)
+.=+-+..|-|+.-.+|++.+|+++|++..++..|.++--|-
T Consensus 24 VLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 24 ILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 334566778899999999999999999999999999876653
No 162
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=53.46 E-value=34 Score=25.74 Aligned_cols=51 Identities=6% Similarity=0.127 Sum_probs=36.6
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
+++++.+..-.+. ..+..+++.+|++..|+++.|+....+.|++ .|+-...
T Consensus 26 ~l~~~~~~iL~~l----~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~-----~glv~~~ 76 (138)
T 3bpv_A 26 NLTDAQVACLLRI----HREPGIKQDELATFFHVDKGTIARTLRRLEE-----SGFIERE 76 (138)
T ss_dssp TCCHHHHHHHHHH----HHSTTCBHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCHHHHHHHHHH----HHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEee
Confidence 3466665433221 1246789999999999999999999999987 5555443
No 163
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=53.39 E-value=33 Score=24.98 Aligned_cols=29 Identities=3% Similarity=-0.059 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
+..+++.+|++..|+++.|+.+..+.|++
T Consensus 28 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 28 GNDVYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp TCCEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44589999999999999999999999977
No 164
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=53.14 E-value=12 Score=28.70 Aligned_cols=36 Identities=6% Similarity=0.028 Sum_probs=29.6
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKV-DKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kv-tQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
|.++ +..+||+..|||..|+|..+..+.+ .|+-...
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr~al~~L~~-----~Gli~~~ 66 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVSKAYQSLLD-----DNVIEKR 66 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCEEEe
Confidence 3445 8999999999999999999999987 6665443
No 165
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=52.89 E-value=14 Score=28.37 Aligned_cols=78 Identities=13% Similarity=-0.030 Sum_probs=41.5
Q ss_pred CcHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhC--CC
Q 023151 94 LDIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCG--TS 170 (286)
Q Consensus 94 ~~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sg--vt 170 (286)
.++.+||..||++. ++. ..+..|.+.+.... .|+...+ ++... . .+... ...-..+-.+|+...| ++
T Consensus 23 ~s~~~ia~~lgis~~Tv~---r~~~~~~~~g~~~~-~gr~~~l--~~~~~-~-~i~~~--~~~~~~s~~~i~~~lg~~~s 92 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIR---VYLKDPVSYGTSKR-APRRKAL--SVRDE-R-NVIRA--ASNSCKTARDIRNELQLSAS 92 (141)
T ss_dssp CCHHHHHHHHTCCHHHHH---HHHHSGGGTTCCCC-CCCCCSS--CHHHH-H-HHHHH--HHHCCCCHHHHHHHTTCCSC
T ss_pred CCHHHHHHHHCcCHHHHH---HHHHcccccCCcCC-CCCCCcC--CHHHH-H-HHHHH--HhCCCCCHHHHHHHHCCCcc
Confidence 36778888888776 433 34444432221111 2332222 22222 1 11111 2223467788998888 89
Q ss_pred HHHHHHHHHHH
Q 023151 171 ETEFASVSTTM 181 (286)
Q Consensus 171 ~vt~rnr~ke~ 181 (286)
..||.+..+.+
T Consensus 93 ~~tV~r~l~~~ 103 (141)
T 1u78_A 93 KRTILNVIKRS 103 (141)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 99999988765
No 166
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=52.75 E-value=16 Score=28.66 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=30.1
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKV-DKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kv-tQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
|.++ +..+||+..|||..|+|..+..|.+ .|+-...
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr~Al~~L~~-----~G~i~~~ 70 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSRAYQELER-----AGYIYAK 70 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHH-----CCeEEEe
Confidence 4456 5999999999999999999999987 6665554
No 167
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=52.50 E-value=10 Score=26.90 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=19.6
Q ss_pred CHHHHHHHhCCCHHHHHHHHHH
Q 023151 159 DKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 159 tQ~kla~~sgvt~vt~rnr~ke 180 (286)
+|.+||+.+||++.||.++.+.
T Consensus 29 sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 9999999999999999887653
No 168
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=52.47 E-value=19 Score=26.61 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=25.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..|-.+||...||+..|++++...|++
T Consensus 27 ~~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 27 ATTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 578889999999999999999999976
No 169
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=52.14 E-value=51 Score=25.11 Aligned_cols=52 Identities=8% Similarity=0.123 Sum_probs=33.4
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
+++++.+..-. .-. ..-.+++.+||+..|+++.|+....+.|++ -|+-....
T Consensus 34 ~lt~~~~~vL~--~l~--~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~-----~Glv~r~~ 85 (142)
T 3ech_A 34 DLTPPDVHVLK--LID--EQRGLNLQDLGRQMCRDKALITRKIRELEG-----RNLVRRER 85 (142)
T ss_dssp CCCHHHHHHHH--HHH--HTTTCCHHHHHHHHC---CHHHHHHHHHHH-----TTSEEC--
T ss_pred CCCHHHHHHHH--HHH--hCCCcCHHHHHHHhCCCHHHHHHHHHHHHH-----CCCEeecc
Confidence 45667653322 222 223799999999999999999999999987 56555543
No 170
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=52.07 E-value=16 Score=26.85 Aligned_cols=28 Identities=4% Similarity=0.152 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
-.++-.+||+..+||+.|||.-...|++
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~Le~ 42 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQLES 42 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3588899999999999999999999976
No 171
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=51.95 E-value=15 Score=27.10 Aligned_cols=36 Identities=6% Similarity=0.249 Sum_probs=26.2
Q ss_pred HHHHHHhCCCCCCcHHHHHHHhCCcc-hHHHHHHHHH
Q 023151 82 NSLQNSIGFKNELDIRELGIRFGCIR-LIPLVQKGLS 117 (286)
Q Consensus 82 r~l~~~LgL~~~~~I~~ia~qlg~s~-v~~~A~eiL~ 117 (286)
..|...|.-+-.+++.+||..|++|+ ++++-.+.|+
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le 41 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLE 41 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44555666666789999999999999 6665544444
No 172
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=51.81 E-value=23 Score=27.39 Aligned_cols=54 Identities=7% Similarity=0.060 Sum_probs=32.0
Q ss_pred CChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccCC
Q 023151 137 FSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKKD 197 (286)
Q Consensus 137 ~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~~ 197 (286)
++++.|.. ++.-....+..+++.+||+..|+++.|+....+.|++ -|+-....+
T Consensus 39 lt~~q~~v--L~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~-----~Glv~r~~~ 92 (148)
T 3jw4_A 39 LNSQQGRM--IGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK-----KGYIERRIP 92 (148)
T ss_dssp CCHHHHHH--HHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH-----TTSBCCC--
T ss_pred CCHHHHHH--HHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH-----CCCEEeeCC
Confidence 45666533 3333333336799999999999999999999999987 566555543
No 173
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=51.33 E-value=42 Score=26.09 Aligned_cols=36 Identities=3% Similarity=0.061 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
...+++.+|++..|+++.|+....+.|++ .|+-...
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~-----~glv~r~ 96 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLE-----RGFIRRE 96 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEC-
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEeee
Confidence 45799999999999999999999999987 5655544
No 174
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=51.26 E-value=30 Score=25.62 Aligned_cols=42 Identities=7% Similarity=0.047 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 140 PVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 140 p~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
+.+..+.=|+-....+..++=.+||+.+|+|+.+|..+.++.
T Consensus 3 ~~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 3 NRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555556665555578899999999999999999999987
No 175
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=51.23 E-value=43 Score=25.77 Aligned_cols=74 Identities=7% Similarity=-0.067 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Q 023151 16 KQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFK 91 (286)
Q Consensus 16 ~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~ 91 (286)
+.|++.-|++|........+-.+.+.+.--=-+|+|+|-... ..++.+|.+.+|-+.+.+..+++.++..+.-+
T Consensus 8 ~~I~~~Va~~f~v~~~dl~s~~R~~~i~~aRqiAmYL~r~~t--~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~~d 81 (101)
T 3pvv_A 8 ATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELT--DLSLPKIGQAFGRDHTTVMYAQRKILSEMAER 81 (101)
T ss_dssp HHHHHHHHHHTTCCHHHHHSSCCCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHhCCCCCchhhHHHHHHHHHHHHHh--CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhC
Confidence 368888888888777753333333333333347889887765 46789999999988999999999999887743
No 176
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=50.68 E-value=35 Score=25.29 Aligned_cols=42 Identities=10% Similarity=0.071 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 139 RPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 139 pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
++.+..+.-|+-..... .++-.+||+.+|+|+.+|.+++++.
T Consensus 4 ~~~i~~~~~~i~~~~~~-~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 4 SPIIQNVLSYITEHFSE-GMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp CCHHHHHHHHHHHHTTS-CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 44556666677666544 7899999999999999999999998
No 177
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=50.59 E-value=43 Score=27.72 Aligned_cols=68 Identities=6% Similarity=-0.035 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhC----CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 19 IRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRF----DVIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 19 ~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~----~iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
....+.-++.+..+... ....+...+.+..|.--+... .+|++.++++.+.|+++..+.|.++.|.+.
T Consensus 142 ~~~l~~~l~~~~~~~~~-l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~ 213 (232)
T 1zyb_A 142 MNIVSNRAQNLYSRLWD-EPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp HHHHHHHHHHHHHHTTS-CCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHC
Confidence 33444444555554333 234567777766665333322 367899999999999999999999998764
No 178
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=50.50 E-value=31 Score=26.10 Aligned_cols=53 Identities=0% Similarity=-0.046 Sum_probs=37.3
Q ss_pred CChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 137 FSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 137 ~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
++++.+..-. .-...-+..+++.+||+..|+++.|+.+..+.|++ -|+-....
T Consensus 29 lt~~~~~vL~--~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~-----~Gli~r~~ 81 (139)
T 3eco_A 29 ITNEQGHTLG--YLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER-----KKLIYRYV 81 (139)
T ss_dssp CCHHHHHHHH--HHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEEE
T ss_pred CCHHHHHHHH--HHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH-----CCCEeecC
Confidence 4566553322 22222236899999999999999999999999987 55555443
No 179
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=50.41 E-value=11 Score=27.93 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
..+||.+||+.+||++.||.+..+
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 458999999999999999988764
No 180
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=50.38 E-value=14 Score=29.09 Aligned_cols=35 Identities=3% Similarity=-0.089 Sum_probs=29.3
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 156 LKV-DKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 156 ~kv-tQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
.++ +..+||+..|||..|+|..+..|.. .|+-...
T Consensus 33 ~~lPse~~La~~~~vSr~tvr~Al~~L~~-----~Gli~~~ 68 (126)
T 3by6_A 33 DQLPSVRETALQEKINPNTVAKAYKELEA-----QKVIRTI 68 (126)
T ss_dssp CEECCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCEEEe
Confidence 345 8999999999999999999999977 6665443
No 181
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=50.33 E-value=44 Score=26.17 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=28.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
..|+..||+..|+++.|+.++...|++ .|+-.-.
T Consensus 51 ~ps~~~LA~~l~~s~~~V~~~l~~Le~-----kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTVSAAECMEMVRRLLQ-----KGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSSCHHHHHHHHHHHHH-----TTSSEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCEEEE
Confidence 389999999999999999999999977 5554444
No 182
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=50.33 E-value=33 Score=27.57 Aligned_cols=49 Identities=8% Similarity=0.006 Sum_probs=35.8
Q ss_pred CcchHHHHHHHHHHHHhhCC---------CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 39 GVGEVCKAVICLELAASRFD---------VIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 39 Grs~~~~aaacLylAcr~~~---------iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
..+...+.+..|.--+...| +|++.++++.+.|+++..+.+.++.|.+.
T Consensus 109 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 166 (195)
T 3b02_A 109 TGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRRE 166 (195)
T ss_dssp SSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 34566666666654444433 57889999999999999999999988764
No 183
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=50.23 E-value=11 Score=27.79 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
...||.++|+.+||++.||.+....
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3579999999999999999988765
No 184
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=50.22 E-value=13 Score=27.08 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
..+||.++|+.+||++.||.+...
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 357999999999999999988664
No 185
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=50.22 E-value=18 Score=23.95 Aligned_cols=27 Identities=11% Similarity=-0.042 Sum_probs=23.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..+.++||+..|+|+.|+++....+..
T Consensus 13 g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 13 GYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp SCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 458899999999999999999988743
No 186
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=50.07 E-value=28 Score=28.74 Aligned_cols=51 Identities=12% Similarity=0.097 Sum_probs=39.1
Q ss_pred HHHHHHH-HHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 141 VFTAVAF-YLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 141 ~~AAAAl-Y~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
-||--++ |+|....+..++-.+||+..|+++..++++...+.+ -|+-...+
T Consensus 27 ~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~-----aGlv~s~r 78 (159)
T 3lwf_A 27 RYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRN-----AGIVKSIR 78 (159)
T ss_dssp HHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-----CCeEEEec
Confidence 3665555 444433345799999999999999999999999987 67766654
No 187
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=50.03 E-value=11 Score=28.78 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=21.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
..+|.+||..+||++.|+.++.+
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIen 54 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVN 54 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHT
T ss_pred hcCHHHHHHHcCCCHHHHHHHHc
Confidence 89999999999999999988754
No 188
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=49.79 E-value=12 Score=28.53 Aligned_cols=28 Identities=7% Similarity=0.006 Sum_probs=23.3
Q ss_pred hCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 153 KHKLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 153 ~~k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
.....+||.+||+.+||++.||.++...
T Consensus 23 r~~~gltq~eLA~~lGis~~~is~ie~G 50 (104)
T 3trb_A 23 GFLDKMSANQLAKHLAIPTNRVTAILNG 50 (104)
T ss_dssp HHTTSCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 3455789999999999999999887653
No 189
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=49.76 E-value=8 Score=27.07 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
.+|..++|+..|||+.||++..+
T Consensus 2 ~lt~~e~a~~LgvS~~Tl~rw~~ 24 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTT
T ss_pred ccCHHHHHHHHCcCHHHHHHHHH
Confidence 46889999999999999987643
No 190
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=49.54 E-value=55 Score=24.16 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=23.3
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Q 023151 57 FDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFK 91 (286)
Q Consensus 57 ~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~ 91 (286)
...+++++++++..|+++..+.+.+ ....|+.
T Consensus 18 ~~~~~~~~~lA~~~~~S~~~l~r~f---k~~~G~s 49 (108)
T 3oou_A 18 FSEGMSLKTLGNDFHINAVYLGQLF---QKEMGEH 49 (108)
T ss_dssp TTSCCCHHHHHHHHTSCHHHHHHHH---HHHHSSC
T ss_pred hcCCCCHHHHHHHHCcCHHHHHHHH---HHHHCcC
Confidence 3447899999999999988876544 4556653
No 191
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=49.23 E-value=26 Score=27.17 Aligned_cols=52 Identities=6% Similarity=0.026 Sum_probs=36.3
Q ss_pred CChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccCC
Q 023151 137 FSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKKD 197 (286)
Q Consensus 137 ~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~~ 197 (286)
++++.|..-. .-. ....+++.+||+..|+++.|+....+.|++ -|+-....+
T Consensus 39 lt~~q~~iL~--~l~--~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~-----~Glv~r~~~ 90 (149)
T 4hbl_A 39 ITYSQYLVML--TLW--EENPQTLNSIGRHLDLSSNTLTPMLKRLEQ-----SGWVKRERQ 90 (149)
T ss_dssp CCHHHHHHHH--HHH--HSSSEEHHHHHHHHTCCHHHHHHHHHHHHH-----HTSEEC---
T ss_pred CCHHHHHHHH--HHH--HCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEeeCCC
Confidence 4566654322 222 236789999999999999999999999987 566655543
No 192
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=49.23 E-value=14 Score=28.20 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
....||.+||+.+||++.||.+....
T Consensus 34 ~~gltq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 34 DYGLTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 34589999999999999999987764
No 193
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=49.06 E-value=14 Score=28.28 Aligned_cols=27 Identities=4% Similarity=0.067 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
.....||.++|+.+||++.||.+....
T Consensus 22 ~~~glsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 22 KKQGLTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HHcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 344679999999999999999988754
No 194
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=48.95 E-value=18 Score=28.70 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=29.9
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKV-DKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kv-tQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
|.++ +..+||+..|||..|+|..+..|.. .|+-...
T Consensus 25 G~~LPse~~La~~~gvSr~tVr~Al~~L~~-----~Gli~~~ 61 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATARNGLTLLVE-----AGILYKK 61 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHHHHHHHHHT-----TTSEEEE
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH-----CCcEEEe
Confidence 3456 8999999999999999999999977 6665444
No 195
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=48.83 E-value=13 Score=28.40 Aligned_cols=28 Identities=7% Similarity=0.125 Sum_probs=25.3
Q ss_pred CCC-CHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKV-DKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kv-tQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
.++ +..+||+..|||..|+|..++.|++
T Consensus 41 ~~lps~~eLa~~lgVSr~tVr~al~~L~~ 69 (102)
T 2b0l_A 41 EGLLVASKIADRVGITRSVIVNALRKLES 69 (102)
T ss_dssp EEEECHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345 8899999999999999999999987
No 196
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=48.79 E-value=27 Score=23.84 Aligned_cols=28 Identities=0% Similarity=-0.064 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
...|..+||+..|+|+.|++++......
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5689999999999999999999988754
No 197
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=48.73 E-value=37 Score=27.87 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=33.2
Q ss_pred cchHHHHHHHH-HHHHhh--------CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 40 VGEVCKAVICL-ELAASR--------FDVIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 40 rs~~~~aaacL-ylAcr~--------~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
.+...+.+.-| .++.+. ..+|++.++++.+.|+++..+.+.++.|.+.
T Consensus 151 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 207 (232)
T 2gau_A 151 KHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSE 207 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 35566666666 445442 2367788888888888888888888888654
No 198
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=48.64 E-value=20 Score=25.74 Aligned_cols=35 Identities=6% Similarity=-0.044 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
-..+..+|++..|+++.|+.+..+.|++ .|+-...
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L~~-----~glv~~~ 67 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVLLK-----RGFVRRE 67 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEEE
Confidence 4589999999999999999999999977 5555443
No 199
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=48.56 E-value=76 Score=23.10 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC-------------------CCCCcHHHHHHHhCCcchHH
Q 023151 58 DVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGF-------------------KNELDIRELGIRFGCIRLIP 110 (286)
Q Consensus 58 ~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL-------------------~~~~~I~~ia~qlg~s~v~~ 110 (286)
+-+++++++++..|+++..+.+.++. ..|+ ....+|.+||..+|-+....
T Consensus 17 ~~~~~~~~lA~~~~~S~~~l~r~fk~---~~g~s~~~~~~~~Rl~~A~~lL~~~~~si~~iA~~~Gf~~~s~ 85 (103)
T 3lsg_A 17 DSQFTLSVLSEKLDLSSGYLSIMFKK---NFGIPFQDYLLQKRMEKAKLLLLTTELKNYEIAEQVGFEDVNY 85 (103)
T ss_dssp CTTCCHHHHHHHTTCCHHHHHHHHHH---HHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHH---HHCcCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHhCCCCHHH
Confidence 34677777777777777666554433 2332 22346788888888776443
No 200
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=48.20 E-value=11 Score=33.28 Aligned_cols=124 Identities=16% Similarity=0.110 Sum_probs=32.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCcc--hHHHHHHHHHHHHHhhhhcccccc----cc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIR--LIPLVQKGLSLFKDRFTAALPASR----KT 133 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~s~--v~~~A~eiL~~~ke~~~~~L~~gk----~~ 133 (286)
..+..++++..|+++..+.+- ++--..+..-.+.+||..||++- +......--.... . ...-+..+ ..
T Consensus 43 g~t~~~la~~~g~s~~~is~~----e~g~~~p~~~~l~~ia~~l~~~~~~l~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 116 (311)
T 4ich_A 43 PGAQREFAAAIGLDESKLSKS----LNGTRRFSPHELVRIAEHSGVTVNWLINGRDDARTVAA-V-PAPTARSRSAPAGE 116 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHH----HcCCCCCCHHHHHHHHHHHCCChhhhhcCCCccccccC-C-CCcccccCCCCCcc
Confidence 456778888888887766542 22111112236888999998875 2211000000000 0 00000000 00
Q ss_pred CCCCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 134 SADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 134 ~~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
...-..-.+..||+=+-...-=..+|=.+||+.+||++.||-+.+.+-.++-..++
T Consensus 117 ~~~~~r~~il~aa~~l~~~~G~~~~T~~~IA~~AGvs~gtlY~yF~sKe~Ll~av~ 172 (311)
T 4ich_A 117 PQSEARRRILETAWRLIARRGYHNVRIHDIASELGTSNATIHYHFPSKKDILLEAL 172 (311)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHH
Confidence 00001122333443333333224589999999999999999998877555444333
No 201
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=47.98 E-value=30 Score=26.80 Aligned_cols=46 Identities=7% Similarity=0.010 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 145 VAFYLCAKKHKLK-VDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 145 AAlY~A~~~~k~k-vtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
..+|.+-...+.. +|..+||+..|+++.|+.+..+.|++ .|+-...
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~-----~GlV~r~ 75 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHE-----KEILQRS 75 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCEEee
Confidence 3455554555655 89999999999999999999999977 5555443
No 202
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=47.93 E-value=24 Score=25.24 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
.+...+..+|++..|+++.|+....+.|++ .|+-...
T Consensus 35 ~~~~~s~~ela~~l~is~~tvs~~l~~L~~-----~glv~~~ 71 (99)
T 3cuo_A 35 GSPGTSAGELTRITGLSASATSQHLARMRD-----EGLIDSQ 71 (99)
T ss_dssp TCCSEEHHHHHHHHCCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred hCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCEEEE
Confidence 355789999999999999999999999977 5555443
No 203
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=47.52 E-value=13 Score=27.93 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=23.4
Q ss_pred hCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 153 KHKLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 153 ~~k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
......||.++|+.+||++.||.+....
T Consensus 20 r~~~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 20 LEPLDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp TTTTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4455789999999999999999987653
No 204
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=47.49 E-value=45 Score=27.26 Aligned_cols=38 Identities=11% Similarity=0.131 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccCC
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKKD 197 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~~ 197 (286)
+..+++.+||+..|+++.|+....+.|++ -|+-....+
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~-----~GlV~r~~~ 92 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEK-----NGYVDVIPS 92 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHH-----TTSEEEEEC
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEeccC
Confidence 56799999999999999999999999987 566555443
No 205
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=47.29 E-value=19 Score=26.47 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=8.3
Q ss_pred CcHHHHHHHhCCcc
Q 023151 94 LDIRELGIRFGCIR 107 (286)
Q Consensus 94 ~~I~~ia~qlg~s~ 107 (286)
|++.+||..||+|.
T Consensus 25 psv~EIa~~lgvS~ 38 (77)
T 2jt1_A 25 VKTRDIADAAGLSI 38 (77)
T ss_dssp EEHHHHHHHHTCCH
T ss_pred cCHHHHHHHHCCCH
Confidence 45666666666654
No 206
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=47.18 E-value=80 Score=23.61 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..+++.+||+..|+++.|+....+.|++
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3699999999999999999999999987
No 207
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=47.17 E-value=1.7e+02 Score=26.81 Aligned_cols=96 Identities=9% Similarity=0.065 Sum_probs=73.5
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCC-CcchHHHHHHHHHHHHhhC-CCCCCHHHHHHHhCCCHHHHHHH
Q 023151 3 LSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSII-GVGEVCKAVICLELAASRF-DVIFDRKTAIKLSGMSEKAYNRS 80 (286)
Q Consensus 3 i~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~-Grs~~~~aaacLylAcr~~-~iprd~~e~~k~sg~~~k~y~~~ 80 (286)
|.||...-.++. .+.=-|-.|+.++..+.++... ..+..=+..+||-+|.+.+ ...++-+.-+++.|++.+++...
T Consensus 81 l~RI~k~t~ls~--~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~L 158 (293)
T 2pmi_B 81 FIRLTKFSSLEH--CVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNIL 158 (293)
T ss_dssp HHHHHHTTTCCH--HHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHcCCCH--HHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHHH
Confidence 567777778874 5666666666666655444433 3578889999999999977 58889999999999999999999
Q ss_pred HHHHHHHhCCCCCCcHHHHH
Q 023151 81 FNSLQNSIGFKNELDIRELG 100 (286)
Q Consensus 81 yr~l~~~LgL~~~~~I~~ia 100 (286)
=+.+-..|+-+..+.-.+++
T Consensus 159 E~eFL~lLdf~L~V~~ee~~ 178 (293)
T 2pmi_B 159 ENDFLKRVNYRIIPRDHNIT 178 (293)
T ss_dssp HHHHHHTTTTCCSCCTTHHH
T ss_pred HHHHHHHcCCceeeCHHHHH
Confidence 99999999987776554443
No 208
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=47.14 E-value=72 Score=23.82 Aligned_cols=51 Identities=8% Similarity=0.143 Sum_probs=36.4
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
+++++.+..-. .-. .++ .+++.+|++..|+++.|+....+.|++ .|+-...
T Consensus 35 ~l~~~~~~iL~--~l~-~~~-~~t~~ela~~l~~~~~tvs~~l~~L~~-----~glv~r~ 85 (140)
T 2nnn_A 35 GLTPTQWAALV--RLG-ETG-PCPQNQLGRLTAMDAATIKGVVERLDK-----RGLIQRS 85 (140)
T ss_dssp CCCHHHHHHHH--HHH-HHS-SBCHHHHHHHTTCCHHHHHHHHHHHHH-----TTCEEEE
T ss_pred CCCHHHHHHHH--HHH-HcC-CCCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEee
Confidence 45666654322 111 223 799999999999999999999999987 5555443
No 209
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=46.88 E-value=26 Score=32.40 Aligned_cols=40 Identities=10% Similarity=0.133 Sum_probs=33.2
Q ss_pred HHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 151 AKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 151 ~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
.....-.+|+.+|++..|+|+.|+.++.++|.+ .|+-.+.
T Consensus 24 ~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~-----~g~i~~~ 63 (406)
T 1z6r_A 24 LIDQLGPVSRIDLSRLAQLAPASITKIVHEMLE-----AHLVQEL 63 (406)
T ss_dssp HHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHH-----HTSEEEC
T ss_pred HHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHH-----CCcEEee
Confidence 344556799999999999999999999999988 6665553
No 210
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=46.76 E-value=41 Score=28.16 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHHHHhh----------CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 40 VGEVCKAVICLELAASR----------FDVIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 40 rs~~~~aaacLylAcr~----------~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
.+...+.+..|..-+.. ..+|++.++++.+.|+++..+.+.++.|.+.
T Consensus 163 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 220 (243)
T 3la7_A 163 RDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp SSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHHC
Confidence 35555555555443332 2467788888888888888888888888754
No 211
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=46.54 E-value=44 Score=25.32 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
..+++.+|++..|+++.|+....+.|++ .|+-...
T Consensus 46 ~~~~~~~la~~l~~s~~tvs~~l~~L~~-----~glv~r~ 80 (145)
T 2a61_A 46 GPKRPGELSVLLGVAKSTVTGLVKRLEA-----DGYLTRT 80 (145)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHH-----CCCeeec
Confidence 4699999999999999999999999987 5554443
No 212
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=46.30 E-value=9.1 Score=22.81 Aligned_cols=21 Identities=14% Similarity=0.042 Sum_probs=17.6
Q ss_pred CcHHHHHHHhCCcchHHHHHH
Q 023151 94 LDIRELGIRFGCIRLIPLVQK 114 (286)
Q Consensus 94 ~~I~~ia~qlg~s~v~~~A~e 114 (286)
.+||+||.++.+++|...|++
T Consensus 2 kyIp~IAe~M~~~~Vk~fvR~ 22 (25)
T 3ewt_E 2 KYITTIAGVMTLSQVKGFVRK 22 (26)
T ss_pred CchhHHHHHHhHHHHHHHHHH
Confidence 479999999999998887753
No 213
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=46.28 E-value=51 Score=24.07 Aligned_cols=37 Identities=8% Similarity=-0.098 Sum_probs=29.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 145 VAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 145 AAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
+.-|+-....+..++-.+||+.+|+|+.+|.+++++.
T Consensus 7 i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 7 IQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3445555555557899999999999999999999998
No 214
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=46.27 E-value=39 Score=27.82 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=36.9
Q ss_pred CcchHHHHHHHHHHHHhh------CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Q 023151 39 GVGEVCKAVICLELAASR------FDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGF 90 (286)
Q Consensus 39 Grs~~~~aaacLylAcr~------~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL 90 (286)
..+...+.+.-|.--+.. ..+|++.++++.+.|+++..+.+.++.|.+. |+
T Consensus 151 ~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~-gi 207 (237)
T 3fx3_A 151 AQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAA-GV 207 (237)
T ss_dssp CCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGG-TE
T ss_pred cCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHC-Ce
Confidence 345666666655544432 3478889999999999999999999988765 45
No 215
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=46.25 E-value=41 Score=27.41 Aligned_cols=29 Identities=7% Similarity=0.166 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
+|++.++++.+.|+++..+.+.++.|.+.
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 56777777777777777777777777653
No 216
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=46.22 E-value=20 Score=25.04 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=26.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
+..++-.+||+..|+++.|+.++.+.|++
T Consensus 23 ~~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 23 GGPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp CSCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34578889999999999999999999987
No 217
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=46.08 E-value=52 Score=24.24 Aligned_cols=39 Identities=18% Similarity=0.090 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 142 FTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 142 ~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
+..+.-|+.... ...++-.+||+.+|+|+.+|.+++++.
T Consensus 4 i~~~~~~i~~~~-~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 4 VRQVEEYIEANW-MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHT-TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc-cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455555544 446899999999999999999999998
No 218
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=45.63 E-value=49 Score=23.92 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=27.7
Q ss_pred hCCCCCCHHHHHHHhCCCHHH-HHHHHHHHHH
Q 023151 153 KHKLKVDKLKLIEVCGTSETE-FASVSTTMKD 183 (286)
Q Consensus 153 ~~k~kvtQ~kla~~sgvt~vt-~rnr~ke~~~ 183 (286)
..+...++.+||+..|+++.| +....+.|++
T Consensus 26 ~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~ 57 (95)
T 2pg4_A 26 KKGYEPSLAEIVKASGVSEKTFFMGLKDRLIR 57 (95)
T ss_dssp HTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHH
T ss_pred hcCCCCCHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 345579999999999999999 9999999977
No 219
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=45.49 E-value=97 Score=23.48 Aligned_cols=52 Identities=4% Similarity=0.120 Sum_probs=36.7
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
+++++.+..-. .- ...+ .+++.+||+..|+++.|+....+.|++ .|+-....
T Consensus 37 ~l~~~~~~iL~--~l-~~~~-~~t~~ela~~l~~~~~tvs~~l~~Le~-----~Glv~r~~ 88 (148)
T 3nrv_A 37 GIGMTEWRIIS--VL-SSAS-DCSVQKISDILGLDKAAVSRTVKKLEE-----KKYIEVNG 88 (148)
T ss_dssp TCCHHHHHHHH--HH-HHSS-SBCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEC--
T ss_pred CCCHHHHHHHH--HH-HcCC-CCCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEeec
Confidence 45666654322 11 2334 899999999999999999999999987 45555443
No 220
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=45.36 E-value=14 Score=28.87 Aligned_cols=25 Identities=4% Similarity=0.204 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
....||.+||+.+||++.+|.++..
T Consensus 51 ~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 51 RARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3468999999999999999988765
No 221
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=45.29 E-value=44 Score=22.13 Aligned_cols=42 Identities=10% Similarity=0.172 Sum_probs=30.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE-LDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~-~~I~~ia~qlg~s~ 107 (286)
.++..++++..|+++..|.+-. + |-..+ ..+.+||..||++.
T Consensus 16 glsq~~lA~~~gis~~~i~~~e----~--g~~~~~~~l~~i~~~l~~~~ 58 (71)
T 1zug_A 16 KMTQTELATKAGVKQQSIQLIE----A--GVTKRPRFLFEIAMALNCDP 58 (71)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHH----T--TCCSSCSTHHHHHHHTTSCH
T ss_pred CCCHHHHHHHhCCCHHHHHHHH----c--CCCCChHHHHHHHHHHCCCH
Confidence 3578999999999987775432 2 33222 35999999999975
No 222
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=45.17 E-value=43 Score=27.98 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=27.9
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Q 023151 62 DRKTAIKLSGMSEKAYNRSFNSLQNSIGFK 91 (286)
Q Consensus 62 d~~e~~k~sg~~~k~y~~~yr~l~~~LgL~ 91 (286)
+...+++..|++...+.+..+.|+.+||.+
T Consensus 17 s~s~AA~~L~isq~avS~~i~~LE~~lg~~ 46 (294)
T 1ixc_A 17 NMAAAAKRLHVSQPPITRQMQALEADLGVV 46 (294)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHhCCCcchHHHHHHHHHHHHCCE
Confidence 677889999999999999999999999985
No 223
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=45.04 E-value=39 Score=21.98 Aligned_cols=42 Identities=10% Similarity=-0.062 Sum_probs=29.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
..+..++++..|+++..|.+-.+ |-..+ -.+.+||..||++.
T Consensus 14 g~s~~~lA~~~gis~~~i~~~e~------g~~~~~~~~l~~i~~~l~~~~ 57 (66)
T 2xi8_A 14 KISQSELAALLEVSRQTINGIEK------NKYNPSLQLALKIAYYLNTPL 57 (66)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT------TSCCCCHHHHHHHHHHTTSCH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc------CCCCCCHHHHHHHHHHHCcCH
Confidence 35788999999999877655332 33222 25889999999875
No 224
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=44.83 E-value=16 Score=29.79 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
+.+ ||.+||+.+|+++.|+.+..+
T Consensus 19 ~~~-tq~elA~~~Gis~~~i~~~e~ 42 (189)
T 2fjr_A 19 GFS-QKIQLANHFDIASSSLSNRYT 42 (189)
T ss_dssp TCS-SHHHHHHHTTCCHHHHHHHHH
T ss_pred hhc-CHHHHHHHhCcCHHHHHHHHh
Confidence 444 999999999999999998765
No 225
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=44.48 E-value=27 Score=29.99 Aligned_cols=47 Identities=6% Similarity=-0.028 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCC
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGC 105 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~ 105 (286)
...+-++|++..|++.+.+..-.+.+.+.||++...-+-.+|.++|+
T Consensus 189 ~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~a~~~gl 235 (237)
T 3szt_A 189 VGKTYGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGL 235 (237)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCC
Confidence 34788999999999999999999999999999877666677777775
No 226
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=44.34 E-value=17 Score=27.56 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
...||.+||+.+||++.+|.++...
T Consensus 33 ~gltq~elA~~~gis~~~is~~E~G 57 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVERK 57 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4579999999999999999887643
No 227
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=44.20 E-value=37 Score=27.21 Aligned_cols=50 Identities=8% Similarity=0.044 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 141 VFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 141 ~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
-||--++..-+...+..++-.+||+..|+++.+++++...|.+ -|+-...
T Consensus 14 ~yAl~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~-----~Glv~s~ 63 (149)
T 1ylf_A 14 SIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQ-----AGFVYVN 63 (149)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH-----TTSEEEC
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-----CCcEEEc
Confidence 3555555555554456799999999999999999999999988 6665554
No 228
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=44.20 E-value=42 Score=22.22 Aligned_cols=27 Identities=4% Similarity=0.055 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHh-----CCCHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVC-----GTSETEFASVSTTM 181 (286)
Q Consensus 155 k~kvtQ~kla~~s-----gvt~vt~rnr~ke~ 181 (286)
+..+|..+|++.. +|+..||++-.+++
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 4579999999999 99999999888855
No 229
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=44.18 E-value=37 Score=27.23 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHHHhhCC---------CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 41 GEVCKAVICLELAASRFD---------VIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 41 s~~~~aaacLylAcr~~~---------iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
+.....+.-|..-+...+ +|++.++++.+.|+++..+.+.++.|.+.
T Consensus 139 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~ 194 (210)
T 3ryp_A 139 DVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQ 194 (210)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 455555555544443332 48899999999999999999999988764
No 230
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=43.98 E-value=32 Score=23.86 Aligned_cols=28 Identities=4% Similarity=-0.011 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
...|..+||+..|+|+.|++++......
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998887654
No 231
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=43.87 E-value=30 Score=23.46 Aligned_cols=28 Identities=7% Similarity=-0.085 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
...+..+||+..|+|+.|++++...+.+
T Consensus 25 ~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 25 QDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3459999999999999999999988754
No 232
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=43.83 E-value=32 Score=24.95 Aligned_cols=28 Identities=11% Similarity=-0.058 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
...+..+||+..|+|+.|++++......
T Consensus 52 ~g~s~~eIA~~lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 52 RGWSTAQIATDLGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3469999999999999999999877654
No 233
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=43.63 E-value=16 Score=27.59 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
...||.++|+.+||++.+|.++...
T Consensus 40 ~glsq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 3479999999999999999887653
No 234
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=43.47 E-value=47 Score=25.57 Aligned_cols=28 Identities=4% Similarity=0.014 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
-.++..+||+..||++.|++...+.|++
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999999987
No 235
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=43.30 E-value=21 Score=27.67 Aligned_cols=28 Identities=4% Similarity=0.127 Sum_probs=23.4
Q ss_pred hCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 153 KHKLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 153 ~~k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
......||.+||+.+||++.+|.++...
T Consensus 16 R~~~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 16 REERRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp HHTTTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 3345689999999999999999987765
No 236
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=43.23 E-value=96 Score=22.75 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC-------------------CCCcHHHHHHHhCCcchHHHH
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFK-------------------NELDIRELGIRFGCIRLIPLV 112 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~-------------------~~~~I~~ia~qlg~s~v~~~A 112 (286)
.+++++++++..|+++..+.+.++ +..|+. ...+|.+||.++|-+......
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk---~~~G~s~~~~~~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~ 88 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFR---QQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFS 88 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHH---HHHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCCHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH---HHHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHH
Confidence 677777777777777776654443 333332 334688888888888754433
No 237
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=43.20 E-value=32 Score=24.72 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
...+.++||+..|+++.|++++...+..
T Consensus 35 ~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 35 QGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4479999999999999999999988754
No 238
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=43.20 E-value=44 Score=26.98 Aligned_cols=47 Identities=13% Similarity=0.005 Sum_probs=29.2
Q ss_pred chHHHHHHHHHHHHhhCC---CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 41 GEVCKAVICLELAASRFD---VIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 41 s~~~~aaacLylAcr~~~---iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
+...+.+.-|.--+...| +|++.++++.+.|+++..+.+.++.|.+.
T Consensus 147 ~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 196 (220)
T 3dv8_A 147 SLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp CHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 444455544444343333 57777777777777777777777777653
No 239
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=42.98 E-value=50 Score=25.18 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=36.4
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
+++++.+..-.+ -.. + ..+++.+|++..|+++.|+....+.|++ .|+-...
T Consensus 39 ~l~~~~~~iL~~--l~~-~-~~~t~~ela~~l~~~~~tvs~~l~~Le~-----~Glv~r~ 89 (150)
T 2rdp_A 39 PITPPQFVALQW--LLE-E-GDLTVGELSNKMYLACSTTTDLVDRMER-----NGLVARV 89 (150)
T ss_dssp SSCHHHHHHHHH--HHH-H-CSBCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCHHHHHHHHH--HHH-c-CCCCHHHHHHHHCCCchhHHHHHHHHHH-----CCCeeec
Confidence 346666543321 122 2 3799999999999999999999999987 4555444
No 240
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=42.91 E-value=1.7e+02 Score=28.05 Aligned_cols=26 Identities=4% Similarity=0.019 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
...|..+||+..|||..+||++...-
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~RA 419 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENKA 419 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 68999999999999999999998764
No 241
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=42.85 E-value=33 Score=23.71 Aligned_cols=28 Identities=4% Similarity=-0.101 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
...+..+||+..|+|+.|++++...+..
T Consensus 30 ~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 30 AGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999999988754
No 242
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=42.84 E-value=49 Score=26.88 Aligned_cols=31 Identities=6% Similarity=0.233 Sum_probs=25.1
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 57 FDVIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 57 ~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
..+|++.++++.+.|+++..+.+.++.|.+.
T Consensus 175 ~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 205 (227)
T 3dkw_A 175 VEIPVAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp CCCCSCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 4567888888888888888888888888765
No 243
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=42.57 E-value=20 Score=27.16 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=21.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 158 VDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 158 vtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
++|+.+|+..||.+.||.+.-.++
T Consensus 25 ~gQ~~vAe~~GvdeStISR~k~~~ 48 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRWKRDW 48 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HhhHHHHHHhCCCHHHHhhhhhhH
Confidence 689999999999999999976665
No 244
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=42.39 E-value=61 Score=24.63 Aligned_cols=55 Identities=9% Similarity=0.092 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHh---CCCCC---CcHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhcccccccc
Q 023151 76 AYNRSFNSLQNSI---GFKNE---LDIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKT 133 (286)
Q Consensus 76 ~y~~~yr~l~~~L---gL~~~---~~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~ 133 (286)
.|...|+.|...+ .+++. |++++||.+||+|. .++.|...|+. .++.....|++.
T Consensus 10 ~~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~---~Gli~~~~~~G~ 71 (113)
T 3tqn_A 10 IYQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLD---DNVIEKRRGLGM 71 (113)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHH---TTSEEEETTTEE
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH---CCCEEEecCCeE
Confidence 4555666665543 34443 48999999999999 88888777774 544333345543
No 245
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=42.25 E-value=41 Score=28.55 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=32.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCC
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGC 105 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~ 105 (286)
..+-.||++..|++...+..-++.+.+.||++...-.-.+|.++|+
T Consensus 188 g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~a~~~gl 233 (234)
T 1l3l_A 188 GKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKL 233 (234)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCC
Confidence 4567777888888888887777777777777666555556666554
No 246
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=42.21 E-value=67 Score=26.92 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=40.6
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCCC------CCcHHHHHHHhCCcchHHHHHHHHHHHHH
Q 023151 62 DRKTAIKLSGMSEKAYNRSFNSLQNSIGFKN------ELDIRELGIRFGCIRLIPLVQKGLSLFKD 121 (286)
Q Consensus 62 d~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~------~~~I~~ia~qlg~s~v~~~A~eiL~~~ke 121 (286)
++..+++..|++...+.+..+.|+.+||.+- ++.+...+..| ...|.++++.+.+
T Consensus 19 s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l-----~~~a~~il~~~~~ 79 (306)
T 3hhg_A 19 SFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEGAQY-----FRRAQRILQEMAA 79 (306)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEETTSSSCEECHHHHHH-----HHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCeeEeecCCCeeECHhHHHH-----HHHHHHHHHHHHH
Confidence 6778999999999999999999999999853 23344444443 5666666665553
No 247
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=42.14 E-value=20 Score=25.49 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=19.6
Q ss_pred CHHHHHHHhCCCHHHHHHHHH
Q 023151 159 DKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 159 tQ~kla~~sgvt~vt~rnr~k 179 (286)
+|.++|+..|||+.+|.+.++
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999764
No 248
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=42.13 E-value=33 Score=25.34 Aligned_cols=42 Identities=7% Similarity=0.029 Sum_probs=31.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE-LDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~-~~I~~ia~qlg~s~ 107 (286)
.++..++++.+|+++..|.+-.+ |-.+. -.+.+||..|||+.
T Consensus 37 glTq~eLA~~~GiS~~tis~iE~------G~~~s~~~l~kIa~~L~v~~ 79 (88)
T 3t76_A 37 DMKKGELREAVGVSKSTFAKLGK------NENVSLTVLLAICEYLNCDF 79 (88)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT------TCCCCHHHHHHHHHHHTCCG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc------CCCcCHHHHHHHHHHHCcCH
Confidence 45889999999999988765433 32222 25899999999975
No 249
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=42.01 E-value=22 Score=28.30 Aligned_cols=52 Identities=12% Similarity=0.205 Sum_probs=35.3
Q ss_pred CChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 137 FSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 137 ~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
++++.|.. |+.-...-+..+++.+|++..|+++.|+....+.|++ -|+-...
T Consensus 44 lt~~q~~v--L~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~-----~Glv~r~ 95 (168)
T 3u2r_A 44 LSAQQYNT--LRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD-----RGLVLRT 95 (168)
T ss_dssp CCHHHHHH--HHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH-----TTSEEEE
T ss_pred CCHHHHHH--HHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH-----CCCEeec
Confidence 46666543 3333333356899999999999999999999999987 5555544
No 250
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=41.70 E-value=29 Score=27.80 Aligned_cols=50 Identities=10% Similarity=0.158 Sum_probs=37.6
Q ss_pred HHHHH-HHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 142 FTAVA-FYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 142 ~AAAA-lY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
||--+ +|+|....+..++-.+||+..|+++..++++...|.+ -|+-...+
T Consensus 12 yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~-----aGlv~s~r 62 (143)
T 3t8r_A 12 YGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRN-----AGLIRSVR 62 (143)
T ss_dssp HHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHH-----TTSEEECS
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-----CCEEEecC
Confidence 44444 4555433345799999999999999999999999987 67766553
No 251
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=41.61 E-value=35 Score=28.25 Aligned_cols=33 Identities=3% Similarity=0.038 Sum_probs=27.4
Q ss_pred HHhCCCCCCHHHHHHHhCCC-HHHHHHHHHHHHH
Q 023151 151 AKKHKLKVDKLKLIEVCGTS-ETEFASVSTTMKD 183 (286)
Q Consensus 151 ~~~~k~kvtQ~kla~~sgvt-~vt~rnr~ke~~~ 183 (286)
....|...||.+||+.+|++ +.|+.+..+.+.+
T Consensus 19 ~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~ 52 (202)
T 1jhf_A 19 ISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALAR 52 (202)
T ss_dssp HHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34456667999999999999 9999998887765
No 252
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=41.56 E-value=28 Score=27.52 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=28.8
Q ss_pred HHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 149 LCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 149 ~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..++++....++.+|++..|+|..||.+.-+.+..
T Consensus 50 ~Ia~lL~~G~SyreIa~~tG~StaTIsRv~r~L~~ 84 (107)
T 3frw_A 50 EVAKMLTDKRTYLDISEKTGASTATISRVNRSLNY 84 (107)
T ss_dssp HHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCccHHHHHHHHHHHHc
Confidence 33445556699999999999999999999888854
No 253
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=41.51 E-value=34 Score=25.28 Aligned_cols=27 Identities=4% Similarity=0.016 Sum_probs=24.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..+.++||+..|+|+.|++++...+..
T Consensus 42 g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 42 GLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 468899999999999999999988854
No 254
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=41.42 E-value=76 Score=24.06 Aligned_cols=25 Identities=4% Similarity=0.076 Sum_probs=24.4
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 159 DKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 159 tQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
++.+|++..|+++.|+....+.|++
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHH
Confidence 9999999999999999999999987
No 255
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=41.41 E-value=40 Score=26.96 Aligned_cols=29 Identities=21% Similarity=0.356 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
+|++.++++.+.|+++..+.+.++.|.+.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 191 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 46788888888888888888888887753
No 256
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=41.31 E-value=31 Score=27.62 Aligned_cols=39 Identities=10% Similarity=0.214 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccCC
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKKD 197 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~~ 197 (286)
.+..+++.+||+..|+++.|+....+.|++ -|+-....+
T Consensus 65 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~-----~GlV~r~~~ 103 (166)
T 3deu_A 65 LPPDQSQIQLAKAIGIEQPSLVRTLDQLED-----KGLISRQTC 103 (166)
T ss_dssp SCSSEEHHHHHHHHTSCHHHHHHHHHHHHH-----TTSEEEC--
T ss_pred cCCCCCHHHHHHHHCCCHhhHHHHHHHHHH-----CCCEEeeCC
Confidence 456799999999999999999999999987 566655543
No 257
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=41.26 E-value=34 Score=27.01 Aligned_cols=57 Identities=11% Similarity=-0.113 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHh-C--CCCC---CcHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCC
Q 023151 76 AYNRSFNSLQNSI-G--FKNE---LDIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSA 135 (286)
Q Consensus 76 ~y~~~yr~l~~~L-g--L~~~---~~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~ 135 (286)
.|...|..|.... . ++++ |+.++||.+||+|. .++.|...|+. .++.....|++..+
T Consensus 5 ~~~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~---~Gli~~~~g~G~~V 68 (129)
T 2ek5_A 5 LYKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVE---AGILYKKRGIGMFV 68 (129)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHT---TTSEEEETTTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH---CCcEEEecCCEEEE
Confidence 3566666665533 2 3332 38999999999999 88888777774 44444444555443
No 258
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=41.04 E-value=25 Score=24.58 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 58 DVIFDRKTAIKLSGMSEKAYNRSFNSLQN 86 (286)
Q Consensus 58 ~iprd~~e~~k~sg~~~k~y~~~yr~l~~ 86 (286)
+-|++..++++..|+++..+.+.++.|..
T Consensus 23 ~~~~s~~eLA~~lglsr~tv~~~l~~L~~ 51 (67)
T 2heo_A 23 GGPVAIFQLVKKCQVPKKTLNQVLYRLKK 51 (67)
T ss_dssp CSCEEHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45666677777777777777666666654
No 259
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=41.02 E-value=46 Score=22.42 Aligned_cols=42 Identities=10% Similarity=-0.059 Sum_probs=28.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
.++..++++..|+++..|.+-.+ |-..+ -.+.+||..||++.
T Consensus 23 g~s~~~lA~~~gis~~~i~~~e~------g~~~~~~~~l~~ia~~l~~~~ 66 (76)
T 3bs3_A 23 QRTNRWLAEQMGKSENTISRWCS------NKSQPSLDMLVKVAELLNVDP 66 (76)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT------TSSCCCHHHHHHHHHHHTSCG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc------CCCCCCHHHHHHHHHHHCcCH
Confidence 36778889999998876654322 32222 25888999999876
No 260
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=41.01 E-value=44 Score=22.32 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=18.9
Q ss_pred CHHHHHHHhCCCHHHHHHHH
Q 023151 159 DKLKLIEVCGTSETEFASVS 178 (286)
Q Consensus 159 tQ~kla~~sgvt~vt~rnr~ 178 (286)
++.++|+..|+|+.+|.+..
T Consensus 15 s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHH
Confidence 99999999999999998876
No 261
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=40.98 E-value=67 Score=25.41 Aligned_cols=34 Identities=6% Similarity=0.101 Sum_probs=29.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
.+++.+|++..|+++.|+....+.|++ .|+-...
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~Le~-----~GlV~r~ 92 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRLVG-----AELIDRL 92 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH-----CCCEEec
Confidence 699999999999999999999999987 5555544
No 262
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=40.96 E-value=42 Score=26.34 Aligned_cols=51 Identities=6% Similarity=-0.018 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 139 RPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 139 pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
++.+-.||+=+-...==..+|=.+||+.+|||+.||-+.+.+-.++...++
T Consensus 9 ~~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~av~ 59 (192)
T 2zcm_A 9 KDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSV 59 (192)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHH
Confidence 556666665555544335789999999999999999998877666655554
No 263
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=40.93 E-value=38 Score=28.17 Aligned_cols=32 Identities=3% Similarity=-0.073 Sum_probs=28.3
Q ss_pred HhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 152 KKHKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 152 ~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..+|...|.++||+..|++..|++.+.+.|++
T Consensus 19 ~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~ 50 (196)
T 3k2z_A 19 EKNGYPPSVREIARRFRITPRGALLHLIALEK 50 (196)
T ss_dssp HHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 34566789999999999999999999999976
No 264
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=40.88 E-value=59 Score=21.60 Aligned_cols=42 Identities=12% Similarity=0.009 Sum_probs=29.2
Q ss_pred CCCHHHHHHHhC--CCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSG--MSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg--~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
.++..++++..| +++..|.+- ++ |-..+ -.+.+||..|||+.
T Consensus 21 glsq~~lA~~~g~~is~~~i~~~----e~--g~~~~~~~~l~~la~~l~v~~ 66 (71)
T 2ewt_A 21 GLSLHGVEEKSQGRWKAVVVGSY----ER--GDRAVTVQRLAELADFYGVPV 66 (71)
T ss_dssp TCCHHHHHHHTTTSSCHHHHHHH----HH--TCSCCCHHHHHHHHHHHTSCG
T ss_pred CCCHHHHHHHHCCcCCHHHHHHH----HC--CCCCCCHHHHHHHHHHHCcCH
Confidence 357889999999 888776543 33 33222 25888999999875
No 265
>3k8u_A Putative ABC transporter, ATP-binding protein COMA; cysteine protease, quorum-sensing, hydrolase; 1.90A {Streptococcus mutans}
Probab=40.88 E-value=22 Score=28.35 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=30.5
Q ss_pred CCCCCcchHHHHHHHHHHHHhhCCCCCCHHHHHHHhCC
Q 023151 35 SSIIGVGEVCKAVICLELAASRFDVIFDRKTAIKLSGM 72 (286)
Q Consensus 35 ~l~~Grs~~~~aaacLylAcr~~~iprd~~e~~k~sg~ 72 (286)
..+++.....-+.+||-+.|+.+|++.+.+++....++
T Consensus 7 p~~~Q~~~~dcglacLa~i~~~~g~~~s~~~L~~~~~~ 44 (156)
T 3k8u_A 7 KLVPQIDTRDCGPAVLASVAKHYGSNYSIAYLRELSKT 44 (156)
T ss_dssp CCCCCSSTTCHHHHHHHHHHHHTTCCCCHHHHHHHTTC
T ss_pred ceEECCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHcCC
Confidence 35666666667888999999999999999998776654
No 266
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=40.82 E-value=33 Score=25.85 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
...+||.+||+.+||++.||.+...
T Consensus 47 ~~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 6679999999999999999987654
No 267
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=40.64 E-value=57 Score=25.10 Aligned_cols=52 Identities=8% Similarity=0.107 Sum_probs=37.2
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
+++++.+..-.+ ......+++.+|++..|+++.|+....+.|++ .|+-....
T Consensus 44 ~l~~~~~~iL~~----l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~-----~glv~r~~ 95 (153)
T 2pex_A 44 DLTYPQYLVMLV----LWETDERSVSEIGERLYLDSATLTPLLKRLQA-----AGLVTRTR 95 (153)
T ss_dssp TCCHHHHHHHHH----HHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEEC
T ss_pred CCCHHHHHHHHH----HHhCCCcCHHHHHHHhCCCcccHHHHHHHHHH-----CCCEeecC
Confidence 346666543221 11235799999999999999999999999987 56555543
No 268
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=40.62 E-value=19 Score=27.20 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=24.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
.++-.+||+..|||+.|||.-...|++
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~~Le~ 42 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLERMEA 42 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 477889999999999999999999965
No 269
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=40.58 E-value=45 Score=27.21 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
+|++.++++.+.|+++..+.+.++.|.+.
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 204 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALADFAHR 204 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 56788888888888888888888887664
No 270
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=40.54 E-value=5.9 Score=32.77 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
...++||.+||+..|+|+.|+.+..++|.+
T Consensus 161 ~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~ 190 (213)
T 1o5l_A 161 LTLPVTLEELSRLFGCARPALSRVFQELER 190 (213)
T ss_dssp ------------------------------
T ss_pred ccCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999999977
No 271
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=40.50 E-value=39 Score=25.29 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 139 RPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 139 pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
.+.+..+.-|+-... ...++-.+||+.+|+|+.+|.+++++.
T Consensus 6 ~~~i~~~~~~i~~~~-~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 6 QPKLTEAVSLMEANI-EEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp CHHHHHHHHHHHTCS-SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhh-cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 455666666664443 445899999999999999999999998
No 272
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=40.50 E-value=58 Score=26.82 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=35.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCcc
Q 023151 61 FDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIR 107 (286)
Q Consensus 61 rd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~s~ 107 (286)
.+.++|++..+++.+.+..-.+.+.+.||++....+-.+|.+.|+..
T Consensus 165 ~s~~eIa~~l~is~~TV~~hi~~l~~KL~~~~r~~l~~~a~~~g~~~ 211 (225)
T 3c3w_A 165 LTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRSR 211 (225)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHTTTC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCC
Confidence 67788888888888888888888888888877766666666666643
No 273
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=40.30 E-value=43 Score=25.11 Aligned_cols=53 Identities=8% Similarity=-0.034 Sum_probs=37.6
Q ss_pred CCCChhHHHHHHHHHHHHhC-CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 135 ADFSRPVFTAVAFYLCAKKH-KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 135 ~D~~pp~~AAAAlY~A~~~~-k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
.+++++++ -||..-... +..++|++|++.++++..|+....+.|+. -|+-+..
T Consensus 16 ~~Lt~~q~---~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~-----kglIkr~ 69 (91)
T 2dk5_A 16 KGSDNQEK---LVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES-----KKLIKAV 69 (91)
T ss_dssp CCSCSSHH---HHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred cCCCHHHH---HHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEEe
Confidence 34455554 233333332 45799999999999999999999999977 5555544
No 274
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=40.29 E-value=43 Score=26.92 Aligned_cols=47 Identities=6% Similarity=-0.045 Sum_probs=32.7
Q ss_pred chHHHHHHHHHHHHhhC---------CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 41 GEVCKAVICLELAASRF---------DVIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 41 s~~~~aaacLylAcr~~---------~iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
+.....+..|.--+... .+|++.++++.+.|+++..+.+.++.|.+.
T Consensus 118 ~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~ 173 (202)
T 2zcw_A 118 RLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELARE 173 (202)
T ss_dssp CHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 45555555554433332 357888888888888888888888888664
No 275
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=40.26 E-value=25 Score=32.30 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
.-.+|+.+|++..|+|+.|+.++.++|.+ .|+-.+.
T Consensus 31 ~~~~sr~~la~~~gls~~tv~~~v~~L~~-----~gli~~~ 66 (380)
T 2hoe_A 31 KSPVSRVELAEELGLTKTTVGEIAKIFLE-----KGIVVEE 66 (380)
T ss_dssp HSCBCHHHHHHHHTCCHHHHHHHHHHHHH-----HTSEEEE
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCEEee
Confidence 56799999999999999999999999988 5665554
No 276
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=40.19 E-value=1.4e+02 Score=25.31 Aligned_cols=35 Identities=9% Similarity=0.007 Sum_probs=26.6
Q ss_pred HhhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCC
Q 023151 54 ASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKN 92 (286)
Q Consensus 54 cr~~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~ 92 (286)
-.....+++++++++..|++++.+.+.++ . .|..+
T Consensus 179 ~~~~~~~~sl~~lA~~~~~S~~~l~r~fk---~-~G~t~ 213 (276)
T 3gbg_A 179 KSDITRNWRWADICGELRTNRMILKKELE---S-RGVKF 213 (276)
T ss_dssp HHTTTSCCCHHHHHHHHTCCHHHHHHHHH---T-TTCCH
T ss_pred HHhhcCCCCHHHHHHHHCcCHHHHHHHHH---H-cCCCH
Confidence 34445589999999999999998887774 2 77643
No 277
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=40.18 E-value=48 Score=22.40 Aligned_cols=42 Identities=12% Similarity=0.158 Sum_probs=30.2
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
.++..++++..|+++..|.+-.+ |-..+ -.+.+||..||++.
T Consensus 23 glsq~~lA~~~gis~~~i~~~e~------g~~~~~~~~l~~la~~l~~~~ 66 (77)
T 2b5a_A 23 GVSQEELADLAGLHRTYISEVER------GDRNISLINIHKICAALDIPA 66 (77)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT------TCSCCBHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHC------CCCCCCHHHHHHHHHHhCcCH
Confidence 46789999999999877755332 33222 15889999999976
No 278
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=40.11 E-value=40 Score=28.63 Aligned_cols=46 Identities=7% Similarity=0.124 Sum_probs=33.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCC
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGC 105 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~ 105 (286)
..+-+||++..|++...+..-++.+.+.||++...-.-.+|.++|+
T Consensus 190 g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~~~~~~~~a~~~gl 235 (236)
T 2q0o_A 190 GKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGL 235 (236)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCC
Confidence 4577888888888888888888888888887766555556666654
No 279
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=40.08 E-value=43 Score=27.28 Aligned_cols=48 Identities=19% Similarity=0.192 Sum_probs=33.7
Q ss_pred cchHHHHHHHHHHHHhhC---------CCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 40 VGEVCKAVICLELAASRF---------DVIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 40 rs~~~~aaacLylAcr~~---------~iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
.+.....+.-|.--+... .+|++.++++.+.|+++..+.+.++.|.+.
T Consensus 158 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~ 214 (230)
T 3iwz_A 158 LDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQAD 214 (230)
T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 355556665555444332 257888999999999999998888888753
No 280
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=39.99 E-value=1e+02 Score=23.39 Aligned_cols=51 Identities=14% Similarity=0.211 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 137 FSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 137 ~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
++++.+..- +.-.. ++ .+++.+||+..|+++.|+....+.|++ -|+-....
T Consensus 29 lt~~q~~iL--~~l~~-~~-~~t~~eLa~~l~~~~~tvs~~l~~Le~-----~Glv~r~~ 79 (145)
T 3g3z_A 29 LNYNLFAVL--YTLAT-EG-SRTQKHIGEKWSLPKQTVSGVCKTLAG-----QGLIEWQE 79 (145)
T ss_dssp CCHHHHHHH--HHHHH-HC-SBCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEECC
T ss_pred CCHHHHHHH--HHHHH-CC-CCCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEeecc
Confidence 466665332 22222 22 499999999999999999999999987 56655543
No 281
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=39.98 E-value=37 Score=24.50 Aligned_cols=28 Identities=0% Similarity=-0.086 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
...|..+||+..|+|+.|++++......
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999877643
No 282
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=39.74 E-value=45 Score=28.16 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
+-..+..+||+..|+|+.|++++.+.|++ .|+-...
T Consensus 31 ~~~~s~~eLA~~lglS~stv~~~l~~Le~-----~GlI~~~ 66 (192)
T 1uly_A 31 NKEMTISQLSEILGKTPQTIYHHIEKLKE-----AGLVEVK 66 (192)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCEEEE
Confidence 35799999999999999999999999987 5554443
No 283
>2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B
Probab=39.44 E-value=1.2e+02 Score=28.48 Aligned_cols=124 Identities=9% Similarity=0.056 Sum_probs=80.6
Q ss_pred chHHHHHHHHHHHHhhCC----------CCCCHHHHHHHhCCCHHHHHHHHHHHHHHh-CCCC-----------------
Q 023151 41 GEVCKAVICLELAASRFD----------VIFDRKTAIKLSGMSEKAYNRSFNSLQNSI-GFKN----------------- 92 (286)
Q Consensus 41 s~~~~aaacLylAcr~~~----------iprd~~e~~k~sg~~~k~y~~~yr~l~~~L-gL~~----------------- 92 (286)
--.|+.|-|+++.-..++ .++..--+.+..|+..=.|.+-...+.+.- +|+.
T Consensus 103 Fh~sLlACc~EiVl~ay~~~~~~~~~~~~~~~FP~il~~~~i~afdf~KVIE~fVr~e~~LprelvkHL~~iEe~iLesl 182 (347)
T 2r7g_A 103 FHMSLLACALEVVMATYSRSTSQNLDSGTDLSFPWILNVLNLKAFDFYKVIESFIKAEGNLTREMIKHLERCEHRIMESL 182 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CCCCCTTHHHHHHTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHhcCCChHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHH
Confidence 356788899998766542 356666788888888766665555555531 1110
Q ss_pred ----------------------C-C-------------cHHHHHHHhCCcc--hHHHHHHHHHHHHHhhhhccccccccC
Q 023151 93 ----------------------E-L-------------DIRELGIRFGCIR--LIPLVQKGLSLFKDRFTAALPASRKTS 134 (286)
Q Consensus 93 ----------------------~-~-------------~I~~ia~qlg~s~--v~~~A~eiL~~~ke~~~~~L~~gk~~~ 134 (286)
. + =+.+||..|+++. +.+.+-.+.+..-. ....|--+|
T Consensus 183 aW~~~S~L~~~l~~~~~~~g~~~sl~~f~rKvy~La~~Rl~~LC~~L~~~~~~~~~~iWt~fe~~l~-~~t~L~~dR--- 258 (347)
T 2r7g_A 183 AWLSDSPLFDLIKQSKDREGKSTSLSLFYKKVYRLAYLRLNTLCERLLSEHPELEHIIWTLFQHTLQ-NEYELMRDR--- 258 (347)
T ss_dssp GGSTTCTHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-HCGGGGTTS---
T ss_pred HhccCCHHHHHHHhccccCCcccHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH-hChHhhcCC---
Confidence 0 0 1889999998775 66655555553331 122333344
Q ss_pred CCCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCH
Q 023151 135 ADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSE 171 (286)
Q Consensus 135 ~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~ 171 (286)
+-.++---|+|..|+..+..++-++|...-.--+
T Consensus 259 ---HLDQiilCaiY~i~Kv~~~~~tF~~Ii~~Yr~qp 292 (347)
T 2r7g_A 259 ---HLDQIMMCSMYGICKVKNIDLKFKIIVTAYKDLP 292 (347)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTST
T ss_pred ---cHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcc
Confidence 5678999999999999999898888887544333
No 284
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=39.42 E-value=19 Score=25.83 Aligned_cols=42 Identities=2% Similarity=-0.068 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCcc
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIR 107 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~s~ 107 (286)
-..++.++++.+|+++..+.+..+ + +.+.....||..||++.
T Consensus 21 ~glT~~~LA~~~Gvs~stls~~~~------~-~~p~~~~~IA~aLgv~~ 62 (74)
T 1neq_A 21 RKLSLSALSRQFGYAPTTLANALE------R-HWPKGEQIIANALETKP 62 (74)
T ss_dssp TSCCHHHHHHHHSSCHHHHHHTTT------S-SCHHHHHHHHHHTTSCH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc------C-CCccHHHHHHHHHCcCH
Confidence 347999999999999998885522 2 22223345999999986
No 285
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=39.21 E-value=53 Score=25.35 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
....+++.+|++..|+++.|+....+.|++ .|+-...
T Consensus 54 ~~~~~t~~ela~~l~i~~~tvs~~l~~Le~-----~Glv~r~ 90 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLMEQSRMTRIVDQMDA-----RGLVTRV 90 (155)
T ss_dssp SCSCBCHHHHHHHTTCCHHHHHHHHHHHHH-----TTSEEEC
T ss_pred HCCCcCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEec
Confidence 345799999999999999999999999987 5555544
No 286
>3b79_A Toxin secretion ATP-binding protein; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.37A {Vibrio parahaemolyticus rimd 2210633}
Probab=39.00 E-value=31 Score=26.15 Aligned_cols=48 Identities=8% Similarity=0.085 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCcc
Q 023151 46 AVICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIR 107 (286)
Q Consensus 46 aaacLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~s~ 107 (286)
..+||-+.|+.+|++++.+++....+.+.. |+ ....+.++|.++|+..
T Consensus 8 gla~L~~i~~~~g~~~~~~~l~~~~~~~~~-------------g~-s~~~l~~~a~~~Gl~~ 55 (129)
T 3b79_A 8 LLNSLIYVSRYYGLANSPEALVNGLPLSDG-------------KL-TPFLLPRAAERAGLVA 55 (129)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHTTCCCBTT-------------BC-CTTTHHHHHHHHTEEE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHhcCCCcCC-------------CC-CHHHHHHHHHHCCCeE
Confidence 577888899999999999999887765321 11 1236777888887766
No 287
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=38.98 E-value=42 Score=25.58 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=29.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
.+++.+|++..|+++.|+....+.|++ .|+-...
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~~-----~glv~r~ 87 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRMEQ-----QGLITRK 87 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHHH-----HTSEECC
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHHH-----CCCEEec
Confidence 789999999999999999999999987 4555544
No 288
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=38.85 E-value=26 Score=27.14 Aligned_cols=48 Identities=8% Similarity=0.035 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 137 FSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 137 ~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
++++.+..-.+. .+..+++.+||+..|+++.|+....+.|++ -|+-..
T Consensus 36 lt~~q~~iL~~l-----~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~-----~Glv~r 83 (151)
T 3kp7_A 36 ISAEQSHVLNML-----SIEALTVGQITEKQGVNKAAVSRRVKKLLN-----AELVKL 83 (151)
T ss_dssp CCHHHHHHHHHH-----HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH-----TTSEEC
T ss_pred CCHHHHHHHHHH-----HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEe
Confidence 456665433222 456799999999999999999999999987 555554
No 289
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=38.75 E-value=37 Score=26.06 Aligned_cols=36 Identities=6% Similarity=0.059 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
-.+++.+|++..|+++.|+....+.|++ .|+-....
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~-----~Glv~r~~ 88 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQR-----AGLIERRT 88 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEEC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCeeecC
Confidence 3799999999999999999999999987 56655543
No 290
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=38.72 E-value=80 Score=23.98 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=37.4
Q ss_pred CChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccCC
Q 023151 137 FSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKKD 197 (286)
Q Consensus 137 ~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~~ 197 (286)
++++.+..-. .......+++.+||+..|+++.|+....+.|++ -|+-....+
T Consensus 34 lt~~q~~vL~----~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~-----~Glv~r~~~ 85 (140)
T 3hsr_A 34 LTYTGYIVLM----AIENDEKLNIKKLGERVFLDSGTLTPLLKKLEK-----KDYVVRTRE 85 (140)
T ss_dssp CCHHHHHHHH----HSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEEC-
T ss_pred CCHHHHHHHH----HHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHH-----CCCeEecCC
Confidence 4666643322 222355799999999999999999999999987 566655543
No 291
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=38.56 E-value=38 Score=24.64 Aligned_cols=28 Identities=4% Similarity=0.052 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
-..+..+|++..|+++.|++...+.|++
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~ 69 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEA 69 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4589999999999999999999999987
No 292
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=38.47 E-value=50 Score=23.87 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
..-..+-.+|++..|+++.|+....+.|++ .|+-...
T Consensus 33 ~~~~~~~~ela~~l~is~~tvs~~L~~L~~-----~Glv~~~ 69 (98)
T 3jth_A 33 HNQELSVGELCAKLQLSQSALSQHLAWLRR-----DGLVTTR 69 (98)
T ss_dssp TTSCEEHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred hcCCCCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCeEEE
Confidence 345789999999999999999999999987 6665544
No 293
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=38.42 E-value=25 Score=28.14 Aligned_cols=27 Identities=11% Similarity=0.201 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
.....||.++|+.+|+++.+|.++.+.
T Consensus 78 ~~~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 78 MKKGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 334679999999999999999988764
No 294
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=38.42 E-value=33 Score=29.63 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
...||.+||+..|||..++.++.+.
T Consensus 23 ~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 23 DGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 3499999999999999999997654
No 295
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=38.33 E-value=20 Score=27.18 Aligned_cols=36 Identities=11% Similarity=0.333 Sum_probs=25.3
Q ss_pred HHHHHHhCCCCCCcHHHHHHHhCCcc-hHHHHHHHHH
Q 023151 82 NSLQNSIGFKNELDIRELGIRFGCIR-LIPLVQKGLS 117 (286)
Q Consensus 82 r~l~~~LgL~~~~~I~~ia~qlg~s~-v~~~A~eiL~ 117 (286)
..|...|.-+-.+++.+||..||+|+ ++++-.+.|+
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le 41 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERME 41 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34455555556689999999999999 6665544444
No 296
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=38.30 E-value=55 Score=21.82 Aligned_cols=42 Identities=19% Similarity=0.179 Sum_probs=29.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
.++..++++..|+++..|.+-. + |-..+ -.+..||..||++.
T Consensus 26 g~s~~~lA~~~gis~~~i~~~e----~--g~~~~~~~~l~~l~~~l~~~~ 69 (74)
T 1y7y_A 26 GLSQETLAFLSGLDRSYVGGVE----R--GQRNVSLVNILKLATALDIEP 69 (74)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHH----T--TCSCCBHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHCcCHHHHHHHH----C--CCCCCCHHHHHHHHHHhCcCH
Confidence 4678899999999987765432 2 33222 15888999999875
No 297
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=38.30 E-value=53 Score=22.03 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=29.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 61 FDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 61 rd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
.+..++++..|+++..|.+-. + |-..+ -.+.+||..||++.
T Consensus 19 ls~~~lA~~~gis~~~i~~~e----~--g~~~~~~~~l~~ia~~l~~~~ 61 (76)
T 1adr_A 19 IRQAALGKMVGVSNVAISQWE----R--SETEPNGENLLALSKALQCSP 61 (76)
T ss_dssp CCHHHHHHHHTSCHHHHHHHH----T--TSSCCCHHHHHHHHHHTTSCH
T ss_pred CCHHHHHHHHCcCHHHHHHHH----c--CCCCCCHHHHHHHHHHHCcCH
Confidence 578899999999987765432 2 32222 25889999999975
No 298
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=38.28 E-value=61 Score=24.87 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=24.2
Q ss_pred HHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 51 ELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQN 86 (286)
Q Consensus 51 ylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr~l~~ 86 (286)
++|-+.-+-|.+..++++..|+++..+.+.++.|.+
T Consensus 17 ~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~ 52 (129)
T 2y75_A 17 ELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRN 52 (129)
T ss_dssp HHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 333333356777777777777777777777777765
No 299
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=38.08 E-value=40 Score=24.83 Aligned_cols=29 Identities=21% Similarity=0.141 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
-+.+..++++..|++++.+.+.+..|++.
T Consensus 26 ~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~ 54 (81)
T 1qbj_A 26 KATTAHDLSGKLGTPKKEINRVLYSLAKK 54 (81)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 46888899999999999998888888763
No 300
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=37.97 E-value=26 Score=25.35 Aligned_cols=21 Identities=14% Similarity=-0.059 Sum_probs=18.4
Q ss_pred CHHHHHHHhCCCHHHHHHHHH
Q 023151 159 DKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 159 tQ~kla~~sgvt~vt~rnr~k 179 (286)
+|.+||+.+|||+.||.+...
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~ 32 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQ 32 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHh
Confidence 499999999999999987743
No 301
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=37.93 E-value=40 Score=25.95 Aligned_cols=35 Identities=3% Similarity=0.037 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
..+++.+||+..|+++.|+....+.|++ .|+-...
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~-----~glv~r~ 84 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQ-----KNLIART 84 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEeec
Confidence 3689999999999999999999999987 5555444
No 302
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=37.70 E-value=52 Score=27.94 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHHHhhCC---------CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 41 GEVCKAVICLELAASRFD---------VIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 41 s~~~~aaacLylAcr~~~---------iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
+...+.+.-|.--+...+ +|++.++++.+.|+++..+.|.++.|.+.
T Consensus 189 ~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 189 LVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp CHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 455555555544343332 47888888888888888888888888763
No 303
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=37.61 E-value=40 Score=27.61 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
+|++.++++.+.|+++..+.+.++.|.+.
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~ 190 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKE 190 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHC
Confidence 45677777777777777777777777653
No 304
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=37.52 E-value=59 Score=26.72 Aligned_cols=40 Identities=25% Similarity=0.231 Sum_probs=30.2
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 48 ICLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 48 acLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
+.+|+|...-+-|++.+++++..|+++..+.+.+..|.+.
T Consensus 32 ~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~a 71 (159)
T 3lwf_A 32 ITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNA 71 (159)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 3456666544568888888888888888888888888653
No 305
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=37.34 E-value=91 Score=24.25 Aligned_cols=80 Identities=11% Similarity=0.002 Sum_probs=45.0
Q ss_pred CcchHHHHHHHHHHHHhhCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHHH--hCCCCCC-cHHHHHHHhCCcchHHHHHH
Q 023151 39 GVGEVCKAVICLELAASRFDVI-FDRKTAIKLSGMSEKAYNRSFNSLQNS--IGFKNEL-DIRELGIRFGCIRLIPLVQK 114 (286)
Q Consensus 39 Grs~~~~aaacLylAcr~~~ip-rd~~e~~k~sg~~~k~y~~~yr~l~~~--LgL~~~~-~I~~ia~qlg~s~v~~~A~e 114 (286)
|.+..-+.+...-..+...|.| .+..++++..|++...+.++++.|.+. +.+.... .-.++...++++++..+..+
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~pl~~kL~~ 108 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEPLWEKLVH 108 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHHHHHHHHH
Confidence 4444444433322233334544 789999999999999999999888874 2222111 11455567888886666666
Q ss_pred HHHH
Q 023151 115 GLSL 118 (286)
Q Consensus 115 iL~~ 118 (286)
+++.
T Consensus 109 ~~~~ 112 (128)
T 2vn2_A 109 HLYT 112 (128)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 306
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=37.14 E-value=27 Score=28.13 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=25.7
Q ss_pred HhCCCCCCHHHHHHHhCCCHHHHHHHHHHHH
Q 023151 152 KKHKLKVDKLKLIEVCGTSETEFASVSTTMK 182 (286)
Q Consensus 152 ~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~ 182 (286)
+++....|+++||+..|+|..||.+.-+.|.
T Consensus 70 klL~~G~syreIA~~~g~S~aTIsRv~r~L~ 100 (119)
T 3kor_A 70 KMIKQGYTYATIEQESGASTATISRVKRSLQ 100 (119)
T ss_dssp HHHHHTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHHHHh
Confidence 3334448999999999999999999888874
No 307
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=37.01 E-value=29 Score=32.42 Aligned_cols=35 Identities=9% Similarity=0.188 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
-.+|+.+|++..|+|+.|+.++.++|.+ .|+-.+.
T Consensus 52 ~~~sr~ela~~~gls~~tv~~~v~~L~~-----~gli~~~ 86 (429)
T 1z05_A 52 GPISRIDLSKESELAPASITKITRELID-----AHLIHET 86 (429)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEec
Confidence 4699999999999999999999999988 6665554
No 308
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=36.96 E-value=74 Score=26.50 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHh-C----CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 139 RPVFTAVAFYLCAKK-H----KLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 139 pp~~AAAAlY~A~~~-~----k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
.+.|-.||+-++... + +...|..+||+..||+..|+.+..++
T Consensus 25 t~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 25 TAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp CHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 466777776555433 2 33689999999999999999987663
No 309
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=36.92 E-value=22 Score=27.14 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=20.4
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 023151 158 VDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 158 vtQ~kla~~sgvt~vt~rnr~ke 180 (286)
+|-.+||+.+|||+.|+++....
T Consensus 21 ~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 21 KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 78899999999999999987643
No 310
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=36.81 E-value=46 Score=26.11 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=30.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
.+++.+|++..|+++.|+....+.|++ -|+-....
T Consensus 67 ~~t~~eLa~~l~~~~~~vs~~l~~Le~-----~Glv~r~~ 101 (161)
T 3e6m_A 67 ELTVGQLATLGVMEQSTTSRTVDQLVD-----EGLAARSI 101 (161)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHHHH-----TTSEEECC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEeeC
Confidence 799999999999999999999999987 56655554
No 311
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=36.78 E-value=52 Score=24.70 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=29.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
.+++.+||+..|+++.|+....+.|++ .|+-...
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~Le~-----~glv~r~ 83 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARLER-----DGIVRRW 83 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHHH-----CCCEEee
Confidence 589999999999999999999999987 5554443
No 312
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=36.52 E-value=54 Score=22.15 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=30.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCC---cHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNEL---DIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~---~I~~ia~qlg~s~ 107 (286)
.++..++++.+|+++..|.+-.+ |-...+ .+.+||..|||+.
T Consensus 20 g~sq~~lA~~~gis~~~i~~~e~------g~~~~~~~~~l~~ia~~l~~~~ 64 (78)
T 3b7h_A 20 NLTINRVATLAGLNQSTVNAMFE------GRSKRPTITTIRKVCGTLGISV 64 (78)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHC------TTCCCCCHHHHHHHHHHHTCCH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc------CCCCCCCHHHHHHHHHHcCCCH
Confidence 36789999999999877655432 433123 5889999999985
No 313
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=35.99 E-value=58 Score=26.08 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 139 RPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 139 pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
.-.+-.||+=+-...- ..+|=.+||+.+||++.||-+.+.+-.++-..++
T Consensus 22 r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~ 71 (215)
T 2hku_A 22 RDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVTYYYGSKERLFVEVA 71 (215)
T ss_dssp HHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 4455566666666666 8999999999999999999999987666555554
No 314
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=35.72 E-value=1.4e+02 Score=22.39 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH--------------H--HHHhCCCCCCcHHHHHHHhCCcchHH
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNS--------------L--QNSIGFKNELDIRELGIRFGCIRLIP 110 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~--------------l--~~~LgL~~~~~I~~ia~qlg~s~v~~ 110 (286)
.+++++++++..|+++..+.+.++. - ..+| .....+|.+||..+|-+....
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~G~s~~~~~~~~Rl~~A~~lL-~~~~~si~eIA~~~Gf~~~s~ 88 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQLI-VIHGFSIKRVAVSCGYHSVSY 88 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TSTTCCHHHHHHHTTCSCHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHCCCCHHH
Confidence 3666777777777666666554432 1 1122 223457888888888877544
No 315
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=35.57 E-value=34 Score=29.15 Aligned_cols=44 Identities=7% Similarity=0.113 Sum_probs=33.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 146 AFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 146 AlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
++|.... .+..+++.+||+..||++.|+....+.|++ .|+-...
T Consensus 10 ~I~~l~~-~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~-----~GlV~r~ 53 (214)
T 3hrs_A 10 CLYELGT-RHNKITNKEIAQLMQVSPPAVTEMMKKLLA-----EELLIKD 53 (214)
T ss_dssp HHHHTTS-SCSCCCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred HHHHHHh-cCCCcCHHHHHHHHCCChhHHHHHHHHHHH-----CCCEEEe
Confidence 3444332 356799999999999999999999999987 5555444
No 316
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=35.35 E-value=38 Score=26.49 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
...+++.+||+..|+++.|+....+.|++ -|+-....
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~-----~Glv~r~~ 98 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVD-----EGYVFRQR 98 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEEE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEEec
Confidence 35789999999999999999999999987 56655543
No 317
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=35.33 E-value=1.5e+02 Score=22.86 Aligned_cols=99 Identities=9% Similarity=0.050 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHh---CCCCC---CcHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHH
Q 023151 76 AYNRSFNSLQNSI---GFKNE---LDIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFY 148 (286)
Q Consensus 76 ~y~~~yr~l~~~L---gL~~~---~~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY 148 (286)
.|...|..|.... .++++ |+.++||.+||+|. .++.|...|.. .++.....|++..+--++..+.-...|
T Consensus 12 ~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~---~Gli~~~~g~G~~V~~~~~~~~~~~~~ 88 (126)
T 3by6_A 12 VYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEA---QKVIRTIPGKGTFITGNTASVKNSNQN 88 (126)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHH---TTSEEEETTTEEEECSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH---CCCEEEecCCeEEEccCchhhhHhHHH
Confidence 4667777776643 24433 48999999999999 88888777774 544444456655442222221111011
Q ss_pred HH-HHhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 149 LC-AKKHKLKVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 149 ~A-~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
.. ..+. .-..-+...|.++..+..+..++
T Consensus 89 ~~r~~le----~~~~~~~~~~~~~~~l~~l~~~~ 118 (126)
T 3by6_A 89 RLLADLS----QVIAELIKSGVKGERIKKIVNDI 118 (126)
T ss_dssp HHHHHHH----HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 0000 01112345688888888777766
No 318
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=35.23 E-value=25 Score=30.74 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=21.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
++|-++||+.+|||..|+++....
T Consensus 2 ~~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 579999999999999999998765
No 319
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=34.94 E-value=59 Score=26.24 Aligned_cols=43 Identities=7% Similarity=0.058 Sum_probs=26.0
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhC
Q 023151 62 DRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFG 104 (286)
Q Consensus 62 d~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg 104 (286)
+.++|++..+++.+.+..-.+.|.+-||++....+-.+|.+.|
T Consensus 171 s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~~~r~~l~~~a~~~g 213 (215)
T 1a04_A 171 PNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQER 213 (215)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHcC
Confidence 5666666666666666666666666666655544444444444
No 320
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=34.85 E-value=53 Score=27.60 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=39.2
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCcc----hHHHHHHHHHHHHHh
Q 023151 62 DRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIR----LIPLVQKGLSLFKDR 122 (286)
Q Consensus 62 d~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~s~----v~~~A~eiL~~~ke~ 122 (286)
+...+++..|++...+.+..+.|+.+||.+- +.+.=...+-+++ +...|.++++.+.+.
T Consensus 20 s~s~AA~~L~isq~avS~~i~~LE~~lg~~L--f~R~~~~~~~lT~~G~~l~~~a~~~l~~~~~~ 82 (306)
T 3fzv_A 20 SVAEASRKLYIAQPSISTAVKGLEESFGVQL--FIRHHAQGVSLTPAGARFYRKAQELLRMAHEF 82 (306)
T ss_dssp SHHHHHHHHTCCC-CHHHHHHHHHHHC-CCC--C---------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCCchHHHHHHHHHHHHhCCee--EeecCCCCceECHhHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999742 3332123344444 678888888877753
No 321
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=34.80 E-value=44 Score=25.76 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
-.+++.+||+..|+++.|+....+.|++ .|+-..
T Consensus 54 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~-----~Glv~r 87 (154)
T 2qww_A 54 PGISVADLTKRLIITGSSAAANVDGLIS-----LGLVVK 87 (154)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEe
Confidence 4699999999999999999999999987 565554
No 322
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=34.65 E-value=36 Score=31.50 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHh--CCCHHHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVC--GTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kvtQ~kla~~s--gvt~vt~rnr~ke~~~ 183 (286)
+.+|.=++|++.. |||+.||||-..++++
T Consensus 34 ~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~ 64 (338)
T 1stz_A 34 KKPVSSQRVLEVSNIEFSSATIRNDMKKLEY 64 (338)
T ss_dssp CSCBCHHHHHHHSCCCSCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 4558888999999 9999999999999987
No 323
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=34.65 E-value=75 Score=24.27 Aligned_cols=48 Identities=6% Similarity=0.014 Sum_probs=38.6
Q ss_pred CCChhHHHHHH-HHHHHHh-CCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 136 DFSRPVFTAVA-FYLCAKK-HKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 136 D~~pp~~AAAA-lY~A~~~-~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
+++|.+|+-=+ |+.++.. -+-..+..+|++..+++..|++.....|++
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~ 62 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQA 62 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHH
Confidence 46888888765 6655433 334579999999999999999999999987
No 324
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=34.56 E-value=8.3 Score=31.01 Aligned_cols=28 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
...++||.+||...|+|+.|+.+..+.+
T Consensus 165 ~~~~~t~~~iA~~lG~sretlsR~l~~l 192 (194)
T 3dn7_A 165 FIQRVPQYLLASYLGFTPEYLSEIRKKY 192 (194)
T ss_dssp ----------------------------
T ss_pred HHHHCCHHHHHHHhCCCHHHHHHHHHhh
Confidence 4568999999999999999999988876
No 325
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=34.51 E-value=73 Score=25.98 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 58 DVIFDRKTAIKLSGMSEKAYNRSFNSLQN 86 (286)
Q Consensus 58 ~iprd~~e~~k~sg~~~k~y~~~yr~l~~ 86 (286)
.+|++.++++.+.|+++..+.+.++.|.+
T Consensus 173 ~~~~t~~~iA~~lg~sr~tvsR~l~~L~~ 201 (231)
T 3e97_A 173 VLPLGTQDIMARTSSSRETVSRVLKRLEA 201 (231)
T ss_dssp EECCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 35667777777777777777777777765
No 326
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=34.40 E-value=84 Score=28.16 Aligned_cols=55 Identities=22% Similarity=0.152 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHhhhhcC--------CCC--CCc-chHHHHHHHHHHHHhhCCCCCCHHHHHHHh
Q 023151 16 KQLIRKAAEIRRLCDVQFD--------SSI--IGV-GEVCKAVICLELAASRFDVIFDRKTAIKLS 70 (286)
Q Consensus 16 ~~V~ekAael~Rla~~k~~--------~l~--~Gr-s~~~~aaacLylAcr~~~iprd~~e~~k~s 70 (286)
++++-+|.+.++.....-+ ++. +|. |..+.++|.+.++++.+|.+++.+++++++
T Consensus 69 ~Nlv~~A~~~l~~~~g~~~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la 134 (306)
T 3pyf_A 69 RNLAWQAAELMAEHVGRAPDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLA 134 (306)
T ss_dssp TSHHHHHHHHHHHHTTCCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhCCCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence 4888888888876432100 222 233 466788888999999999999999988764
No 327
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=34.39 E-value=67 Score=26.52 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
+-.+|-.+||+..|||+.||++..+.|++
T Consensus 34 ~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 34 KEPVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp SSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34589999999999999999999999987
No 328
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=34.34 E-value=32 Score=23.79 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=20.6
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
-++-.++++..||+..||.++.++
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHC
Confidence 367789999999999999887764
No 329
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=34.28 E-value=1e+02 Score=21.22 Aligned_cols=42 Identities=17% Similarity=0.143 Sum_probs=29.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
.++..++++..|++...|.+-.+ |-..+ -.+.+||..|||+.
T Consensus 25 gltq~~lA~~~gvs~~~is~~e~------g~~~~~~~~~~~ia~~l~v~~ 68 (80)
T 3kz3_A 25 GLSYESVADKMGMGQSAVAALFN------GINALNAYNAALLAKILKVSV 68 (80)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHT------TSSCCCHHHHHHHHHHHTSCG
T ss_pred CCCHHHHHHHhCcCHHHHHHHHc------CCCCCCHHHHHHHHHHhCCCH
Confidence 45788999999998877654322 32222 25889999999875
No 330
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=34.20 E-value=67 Score=22.78 Aligned_cols=44 Identities=0% Similarity=-0.035 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcch
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIRL 108 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~v 108 (286)
..+|..++++..|++...|.+ +++ |-..+ -.+.+||..||+++.
T Consensus 26 ~gltq~elA~~~gis~~~is~----~E~--G~~~p~~~~l~~ia~~l~v~~~ 71 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAK----VET--RERRLDVIEFAKWMAACEGLDV 71 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHH----HHT--TSSCCBHHHHHHHHHHTTCGGG
T ss_pred cCCCHHHHHHHhCcCHHHHHH----HHC--CCCCCCHHHHHHHHHHcCCCcH
Confidence 347889999999999876643 332 43322 258899999999884
No 331
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=34.04 E-value=28 Score=27.38 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
...||.++|+.+|+++.++.++...
T Consensus 15 ~gltq~elA~~~gis~~~is~iE~g 39 (130)
T 3fym_A 15 LGMTLTELEQRTGIKREMLVHIENN 39 (130)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4689999999999999999987765
No 332
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=34.03 E-value=1e+02 Score=26.08 Aligned_cols=58 Identities=19% Similarity=0.097 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHHh---CCCCC---CcHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhcc--ccc--ccc
Q 023151 73 SEKAYNRSFNSLQNSI---GFKNE---LDIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAAL--PAS--RKT 133 (286)
Q Consensus 73 ~~k~y~~~yr~l~~~L---gL~~~---~~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L--~~g--k~~ 133 (286)
+.+.+...|..|.... .++++ ++-++||.+||+|. .++.|...|+. .++... ..| ++.
T Consensus 2 ~~~l~~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~---~GlV~~~~~~~~~~G~ 70 (239)
T 2di3_A 2 SVKAHESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEA---LGTISTATGSGPRSGT 70 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHH---HTSEECCSTTSGGGCC
T ss_pred CccHHHHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHH---CCCeEeecccCCCCCc
Confidence 4455666676666532 35544 25779999999999 88989888874 555555 445 544
No 333
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=33.85 E-value=55 Score=25.27 Aligned_cols=33 Identities=6% Similarity=0.013 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhh
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDV 188 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~ 188 (286)
...|..+||+..|+|+.|++++.......+...
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999988876544443
No 334
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=33.78 E-value=40 Score=26.27 Aligned_cols=36 Identities=8% Similarity=0.033 Sum_probs=30.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
...+++.+|++..|+++.|+....+.|++ .|+-...
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~-----~Gli~r~ 99 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQA-----DGLVRRE 99 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHH-----CCCEEec
Confidence 34789999999999999999999999987 5555444
No 335
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=33.73 E-value=41 Score=28.41 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=30.5
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKV-DKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kv-tQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
|.++ +..+||+..|||..|+|.-.+.++. .|+-...
T Consensus 28 G~~LPsE~eLa~~~gVSR~tVReAL~~L~~-----eGlv~~~ 64 (239)
T 1hw1_A 28 GTILPAERELSELIGVTRTTLREVLQRLAR-----DGWLTIQ 64 (239)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-----CCcEEEe
Confidence 5567 7999999999999999999999987 6665544
No 336
>4g0a_A Non-structural protein 2; RNA triphosphatase, RNA binding, hydrolase activity, nucleot binding, metal ION binding, HOST cell cytoplasm; 2.10A {Simian 11 rotavirus} PDB: 1l9v_A 2r7c_A* 2r7j_A 2r7p_A* 2r8f_A* 4g0j_A
Probab=33.54 E-value=19 Score=33.05 Aligned_cols=60 Identities=23% Similarity=0.421 Sum_probs=45.7
Q ss_pred HHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhC--CCHHHHHHHHHHH
Q 023151 119 FKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCG--TSETEFASVSTTM 181 (286)
Q Consensus 119 ~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sg--vt~vt~rnr~ke~ 181 (286)
|++||.++ -....+||+...|.-.|..+|=.+++++++|..++++.. |+---+.|++--+
T Consensus 57 fkkRfnt~---~nsrGmn~etemf~kVA~ll~e~LN~vkvtq~~~~~il~~vvsVRHLEnL~~R~ 118 (317)
T 4g0a_A 57 FKKRYNTN---DNSRGMNFETIMFTKVAMLICEALNSLKVTQANVSNVLSRVVSIRHLENLVIRK 118 (317)
T ss_dssp GGGGBCBT---TBCSSBCTTSHHHHHHHHHHHHHHHTTTCCTTTHHHHHHCBCCHHHHHHHHHHH
T ss_pred HHhhccCC---CCCcCCCccHHHHHHHHHHHHHHHhhceehHHHHHHHHhHeeeHHHHHhHHhhh
Confidence 56677752 333468999999999999999999999999999998874 3444455555444
No 337
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=33.09 E-value=66 Score=22.65 Aligned_cols=42 Identities=14% Similarity=0.160 Sum_probs=30.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
.++..++++..|+++..|.+-.+ |-..+ -.+.+||..|||+.
T Consensus 30 glsq~~lA~~~gis~~~is~~e~------g~~~~~~~~l~~ia~~l~v~~ 73 (92)
T 1lmb_3 30 GLSQESVADKMGMGQSGVGALFN------GINALNAYNAALLAKILKVSV 73 (92)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHT------TSSCCCHHHHHHHHHHHTSCG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc------CCCCCCHHHHHHHHHHHCCCH
Confidence 46889999999999877655433 42222 25889999999987
No 338
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=33.03 E-value=45 Score=24.62 Aligned_cols=28 Identities=7% Similarity=0.035 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
...+.++||+..|+++.|+++....+..
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4578999999999999999999998843
No 339
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=32.96 E-value=9.9 Score=28.40 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=24.6
Q ss_pred CC-CHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 157 KV-DKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 157 kv-tQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
++ +..+||+..|||..|++..++.|.+
T Consensus 34 ~lps~~eLa~~~~vSr~tvr~al~~L~~ 61 (102)
T 1v4r_A 34 TLPSVADIRAQFGVAAKTVSRALAVLKS 61 (102)
T ss_dssp BCCCHHHHHHHSSSCTTHHHHHTTTTTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44 8999999999999999999999976
No 340
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=32.93 E-value=46 Score=25.20 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
-.+++.+|++..|+++.|+....+.|++ .|+-....
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~-----~gli~r~~ 77 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEE-----QGFIYRQE 77 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEEE
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHH-----CCCEEeec
Confidence 3789999999999999999999999987 55555543
No 341
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=32.80 E-value=35 Score=26.64 Aligned_cols=103 Identities=11% Similarity=0.001 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHh--C-CCCC---CcHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHH
Q 023151 74 EKAYNRSFNSLQNSI--G-FKNE---LDIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVA 146 (286)
Q Consensus 74 ~k~y~~~yr~l~~~L--g-L~~~---~~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAA 146 (286)
...|...|..|...+ | ++++ |+.++||.+||+|. .++.|...|+. .++.....|++..+ .++.. .-
T Consensus 10 ~~~~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~---~G~i~~~~~~G~~V--~~~~~--~~ 82 (126)
T 3ic7_A 10 RAIYLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQS---QEVIYNKRGIGFFV--ASGAK--ML 82 (126)
T ss_dssp --CTTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHT---TTSEEEETTTEEEE--CTTHH--HH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH---CCcEEEEcCCccEE--ccCcH--HH
Confidence 344666666666654 2 3333 47889999999999 88888887774 44443344555443 12211 11
Q ss_pred HHHHHH---hCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 147 FYLCAK---KHKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 147 lY~A~~---~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
+.-... ....--.-..-+...|+++.++..++.++.+
T Consensus 83 ~~~~~~~~~~~~~le~~~~~~~~~~~~~~~l~~l~~~~~~ 122 (126)
T 3ic7_A 83 IHSLRKEQFLKEEVGSFFRQLYTLGISIKEIEKMYYEFIQ 122 (126)
T ss_dssp HHHHHHTTCCCCCSHHHHHHHHHTTCCHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 111111 1111122234445679999999998887743
No 342
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=32.75 E-value=40 Score=25.25 Aligned_cols=33 Identities=6% Similarity=0.042 Sum_probs=26.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 158 VDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 158 vtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
.+=.+||...|+++.+++++...|++ .|+-...
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~-----eG~I~~~ 63 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQR-----SAMVYSS 63 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH-----HTSSEEC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCEEeC
Confidence 34459999999999999999999977 5555443
No 343
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=32.47 E-value=43 Score=28.83 Aligned_cols=37 Identities=8% Similarity=0.132 Sum_probs=31.2
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
-|.+++..+||+..|||..|+|.-...|+. .|+-...
T Consensus 46 pG~~L~e~~La~~lgVSr~~VReAL~~L~~-----~Glv~~~ 82 (237)
T 3c7j_A 46 SGTALRQQELATLFGVSRMPVREALRQLEA-----QSLLRVE 82 (237)
T ss_dssp TTCBCCHHHHHHHHTSCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CcCeeCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEEe
Confidence 356789999999999999999999999977 6665544
No 344
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=32.43 E-value=71 Score=24.64 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=31.4
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
.+..+++.+|++..|+++.|+....+.|++ -|+-...
T Consensus 59 ~~~~~~~~ela~~l~i~~~tvs~~l~~Le~-----~Gli~r~ 95 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVTNGNVSGLVNRLIK-----DGMVVKA 95 (160)
T ss_dssp CTTCEEHHHHHHHCSSCCSCHHHHHHHHHH-----HTSEEEC
T ss_pred cCCCCCHHHHHHHHCCChhhHHHHHHHHHH-----CCCEEee
Confidence 455799999999999999999999999987 5555544
No 345
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=32.42 E-value=22 Score=27.48 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=21.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 158 VDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 158 vtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
++|+.+|+..||++.||.+.-.++
T Consensus 24 ~gq~~vA~~iGV~~StISR~k~~~ 47 (97)
T 1xwr_A 24 LGTEKTAEAVGVDKSQISRWKRDW 47 (97)
T ss_dssp HCHHHHHHHHTCCTTTHHHHHHHH
T ss_pred HhHHHHHHHhCCCHHHHHHHHhhh
Confidence 789999999999999999976665
No 346
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=32.41 E-value=87 Score=22.29 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=30.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 61 FDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 61 rd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
.+..++++..|+++..|.+-.+ |-..+ -.+.+||..|||+.
T Consensus 22 ltq~~lA~~~gis~~~is~~e~------g~~~~~~~~~~~i~~~l~v~~ 64 (94)
T 2ict_A 22 VSLREFARAMEIAPSTASRLLT------GKAALTPEMAIKLSVVIGSSP 64 (94)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHH------TSSCCCHHHHHHHHHHTCSCH
T ss_pred CCHHHHHHHhCCCHHHHHHHHc------CCCCCCHHHHHHHHHHHCcCH
Confidence 5789999999999988766443 43222 25889999999987
No 347
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=32.41 E-value=60 Score=22.57 Aligned_cols=42 Identities=10% Similarity=-0.016 Sum_probs=29.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
.++..++++..|+++..|.+-.+ |-..+ -.+.+||..||++.
T Consensus 25 glsq~~lA~~~gis~~~i~~~e~------g~~~~~~~~l~~i~~~l~~~~ 68 (88)
T 2wiu_B 25 GWTQSELAKKIGIKQATISNFEN------NPDNTTLTTFFKILQSLELSM 68 (88)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHH------CGGGCBHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHc------CCCCCCHHHHHHHHHHhCCCH
Confidence 36788999999999877755433 32111 25888999999986
No 348
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=32.39 E-value=48 Score=27.21 Aligned_cols=51 Identities=8% Similarity=0.073 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 141 VFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 141 ~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
-||--++..-+...+..++-.+||+..|+++..++++...+.+ -|+-...+
T Consensus 12 ~yAlr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~-----aGlv~s~r 62 (162)
T 3k69_A 12 SVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHK-----HGYLTGTV 62 (162)
T ss_dssp HHHHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHH-----TTSSEEEC
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCEEeec
Confidence 3555454433344577899999999999999999999999988 66766553
No 349
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=32.33 E-value=70 Score=23.92 Aligned_cols=36 Identities=11% Similarity=0.095 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
.-..+..+|++..|+++.|+....+.|++ .|+-...
T Consensus 36 ~~~~s~~eLa~~lgis~stvs~~L~~L~~-----~GlV~~~ 71 (108)
T 2kko_A 36 QGERAVEAIATATGMNLTTASANLQALKS-----GGLVEAR 71 (108)
T ss_dssp TCCEEHHHHHHHHTCCHHHHHHHHHHHHH-----HTSEEEE
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCeEEE
Confidence 35679999999999999999999999987 6665543
No 350
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=32.28 E-value=1.7e+02 Score=22.28 Aligned_cols=53 Identities=21% Similarity=0.243 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC-------------------CCCcHHHHHHHhCCcchHHHH
Q 023151 57 FDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFK-------------------NELDIRELGIRFGCIRLIPLV 112 (286)
Q Consensus 57 ~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~-------------------~~~~I~~ia~qlg~s~v~~~A 112 (286)
...+++++++++..|+++..+.+.++. ..|+. ...+|.+||..+|-+......
T Consensus 24 ~~~~~sl~~lA~~~~~S~~~l~r~fk~---~~G~s~~~~l~~~Rl~~A~~lL~~~~~si~~IA~~~Gf~~~s~F~ 95 (129)
T 1bl0_A 24 LESPLSLEKVSERSGYSKWHLQRMFKK---ETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLT 95 (129)
T ss_dssp TTSCCCCHHHHHHSSSCHHHHHHHHHH---HHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHH
T ss_pred cCCCCCHHHHHHHHCcCHHHHHHHHHH---HHCcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHCCCCHHHHH
Confidence 345577777777777776666544432 23332 234788888888888755444
No 351
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=32.23 E-value=28 Score=28.43 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
...||.+||+.+||++.||.++.+.
T Consensus 23 ~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999987753
No 352
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=31.69 E-value=44 Score=24.21 Aligned_cols=27 Identities=0% Similarity=-0.010 Sum_probs=23.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..+.++||+..|+|+.|++++...+..
T Consensus 44 g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 44 GYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp TCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478889999999999999999988854
No 353
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=31.66 E-value=61 Score=24.85 Aligned_cols=42 Identities=10% Similarity=0.024 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 139 RPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 139 pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
...+..+.-|+-... ...++-.+||+.+|+|+.+|.+++++.
T Consensus 10 ~~~i~~~~~~i~~~~-~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 10 AITIHSILDWIEDNL-ESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHHHHTTT-TSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc-CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 455565666665543 445899999999999999999999998
No 354
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=31.62 E-value=30 Score=28.27 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
....||.+||+.+||++.|+.++.+.
T Consensus 21 ~~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 21 QVKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 34689999999999999999988764
No 355
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=31.45 E-value=81 Score=24.69 Aligned_cols=51 Identities=10% Similarity=0.051 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 139 RPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 139 pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
.-.+..||+=+-...-=..+|=.+||+.+||++.||-+.+.+-.++-..++
T Consensus 18 r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 68 (213)
T 2qtq_A 18 RDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKALL 68 (213)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHhcCCHHHHHHHHH
Confidence 444555555555554444789999999999999999999987666555554
No 356
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=31.14 E-value=53 Score=24.60 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
...+..+||+..|+++.|+.+..+.|++
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999999999987
No 357
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=31.11 E-value=1.6e+02 Score=22.26 Aligned_cols=32 Identities=9% Similarity=0.016 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Q 023151 58 DVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGF 90 (286)
Q Consensus 58 ~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL 90 (286)
+-+.+..++++..|+++..+.+.++.|++. |+
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l~~Le~~-Gl 60 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEVSHLEEK-GL 60 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TS
T ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHHHC-CC
Confidence 445666666666666666666666666654 43
No 358
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=30.98 E-value=93 Score=25.97 Aligned_cols=54 Identities=7% Similarity=-0.028 Sum_probs=38.4
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccCCh
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKKDP 198 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~~~ 198 (286)
+++++.+..-.+ -.. + -.+++.+||+..|+++.|+....+.|++ -|+-....+|
T Consensus 45 gLt~~q~~iL~~--L~~-~-~~~t~~eLa~~l~i~~stvs~~l~~Le~-----~GlV~r~~~~ 98 (207)
T 2fxa_A 45 DLNINEHHILWI--AYQ-L-NGASISEIAKFGVMHVSTAFNFSKKLEE-----RGYLRFSKRL 98 (207)
T ss_dssp TCCHHHHHHHHH--HHH-H-TSEEHHHHHHHTTCCHHHHHHHHHHHHH-----HTSEEEECC-
T ss_pred CCCHHHHHHHHH--HHH-C-CCcCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEEecCC
Confidence 346666654321 122 2 3699999999999999999999999987 6666655444
No 359
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=30.96 E-value=59 Score=25.94 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=23.2
Q ss_pred HHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 50 LELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQN 86 (286)
Q Consensus 50 LylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr~l~~ 86 (286)
+|+|....+-|++.+++++..|+++..+.+-+..|.+
T Consensus 18 ~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~ 54 (143)
T 3t8r_A 18 ISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRN 54 (143)
T ss_dssp HHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4555443335677777777777777777766666654
No 360
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=30.95 E-value=46 Score=24.92 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
...+++.+||+..|+++.|+....+.|++ .|+-...
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~-----~gli~r~ 80 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKR-----DGYVMTE 80 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHH-----TTSEEEE
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHH-----CCCeeec
Confidence 34799999999999999999999999987 4555443
No 361
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=30.92 E-value=97 Score=23.00 Aligned_cols=36 Identities=8% Similarity=0.067 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHh-CCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVC-GTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~s-gvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
.-..+..+|++.. |+++.|+..+.+.|++ .|+-...
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~-----~GlI~r~ 61 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEA-----DGVINRI 61 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHH-----CCCEEEe
Confidence 4578999999999 9999999999999987 6666544
No 362
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=30.87 E-value=55 Score=25.36 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=29.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
.+++.+|++..|+++.|+....+.|++ .|+-...
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~-----~Gli~r~ 91 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEK-----RGLVVRE 91 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEee
Confidence 799999999999999999999999987 5555444
No 363
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=30.56 E-value=49 Score=28.54 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.9
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKV-DKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kv-tQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
|.++ +..+||+..|||..|+|+-+..+.+ .|+-...
T Consensus 30 g~~lPse~~La~~~~vSr~tvr~Al~~L~~-----~G~i~~~ 66 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIRRAVDLLVE-----EGLVVRK 66 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCEEEE
Confidence 4456 7999999999999999999999987 6665544
No 364
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=30.41 E-value=66 Score=24.66 Aligned_cols=33 Identities=12% Similarity=0.063 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhh
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDV 188 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~ 188 (286)
...|..+||+..|+|+.|++++.......+...
T Consensus 40 ~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 40 EDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 447999999999999999999887765544443
No 365
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=30.35 E-value=55 Score=25.62 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..+++.+||+..||++.|++...+.|++
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~ 80 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLAT 80 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 3579999999999999999999999987
No 366
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=30.33 E-value=61 Score=24.87 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=28.0
Q ss_pred CCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 154 HKL-KVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 154 ~k~-kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
.|. .+|=.+||+.+||++.||-+.+.+-.++-..++
T Consensus 24 ~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 60 (188)
T 3qkx_A 24 EGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFA 60 (188)
T ss_dssp SCSTTCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHHH
T ss_pred cCcccCCHHHHHHHhCCCcchHHHHcCCHHHHHHHHH
Confidence 454 589999999999999999988877555544443
No 367
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=30.28 E-value=64 Score=24.13 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=28.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFK 91 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~ 91 (286)
+.+..++++..|+++..+.+.++.|+. +|+-
T Consensus 45 ~~s~~ela~~l~is~stvsr~l~~Le~-~Glv 75 (119)
T 2lkp_A 45 PLPVTDLAEAIGMEQSAVSHQLRVLRN-LGLV 75 (119)
T ss_dssp CCCHHHHHHHHSSCHHHHHHHHHHHHH-HCSE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH-CCCE
Confidence 689999999999999999999999999 9973
No 368
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=30.25 E-value=70 Score=26.95 Aligned_cols=41 Identities=10% Similarity=-0.066 Sum_probs=30.0
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
|++|.--|-|.--+. ....|+.+||+..|+|+.+|+|+..=
T Consensus 35 dL~piE~A~a~~~L~----~~G~t~eeiA~~lG~s~s~V~~~LrL 75 (178)
T 1r71_A 35 ELTPREIADFIGREL----AKGKKKGDIAKEIGKSPAFITQHVTL 75 (178)
T ss_dssp CCCHHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 557777666543222 23689999999999999999987654
No 369
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=30.14 E-value=61 Score=23.41 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=29.9
Q ss_pred CCCCCHHHH----HHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKL----IEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kl----a~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
....++.+| |+..|+++.|+....+.|++ .|+-...
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~-----~gli~r~ 59 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ-----EGFVKER 59 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCEEEE
Confidence 457899999 89999999999999999987 4555544
No 370
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=30.09 E-value=74 Score=24.59 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
..+|=.+||+.+|||+.||-+.+.+-.++-..++
T Consensus 21 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 54 (194)
T 3bqz_B 21 NATTTGEIVKLSESSKGNLYYHFKTKENLFLEIL 54 (194)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHH
Confidence 4688899999999999999998877555544444
No 371
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=30.09 E-value=42 Score=23.90 Aligned_cols=28 Identities=11% Similarity=0.046 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
...+..+|++..|+++.|+..+.+.|++
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3689999999999999999999999987
No 372
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=29.96 E-value=74 Score=26.35 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=23.7
Q ss_pred CC-CCCHHHHHHHhCCCH-HHHHHHHHHHHHH
Q 023151 58 DV-IFDRKTAIKLSGMSE-KAYNRSFNSLQNS 87 (286)
Q Consensus 58 ~i-prd~~e~~k~sg~~~-k~y~~~yr~l~~~ 87 (286)
.+ |++.++++.+.|+++ ..+.+.++.|.+.
T Consensus 166 ~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~ 197 (238)
T 2bgc_A 166 TLDNLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred EeccCCHHHHHHHhCCChHHHHHHHHHHHHHC
Confidence 35 788888888888888 5888888888663
No 373
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=29.96 E-value=33 Score=29.10 Aligned_cols=39 Identities=21% Similarity=0.198 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhC--------------CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 142 FTAVAFYLCAKKH--------------KLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 142 ~AAAAlY~A~~~~--------------k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
+++=.||.-+... +...||.++|+..|||..|+.+..+.
T Consensus 74 iaPd~LY~~~~~~~~~~s~~~lk~lR~~~glTQ~elA~~LGvsr~tis~yE~G 126 (170)
T 2auw_A 74 FGRDNVYAWAKEQAGEVSHEMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp BCHHHHHHHHHHHTTCCCHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCHHHHHHhhhhhccCCCcHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5555666555433 34789999999999999999887653
No 374
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=29.93 E-value=82 Score=23.55 Aligned_cols=28 Identities=7% Similarity=0.039 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
-.+++.+|++..|+++.|+....+.|++
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 3689999999999999999999999987
No 375
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=29.91 E-value=43 Score=28.10 Aligned_cols=36 Identities=22% Similarity=0.130 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
|.+++..+||+..|||..++|.-...+.. .|+-...
T Consensus 33 G~~L~e~~La~~lgVSRtpVREAL~~L~~-----eGlv~~~ 68 (218)
T 3sxy_A 33 GEKLNVRELSEKLGISFTPVRDALLQLAT-----EGLVKVV 68 (218)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHH-----HTSEEEE
T ss_pred CCEeCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEEe
Confidence 56789999999999999999999999977 6776554
No 376
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=29.77 E-value=49 Score=25.50 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
..+|=.+||+.+||++.||-+.+.+-.++...++
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 60 (194)
T 2g7s_A 27 NSFSYADISQVVGIRNASIHHHFPSKSDLVCKLV 60 (194)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHH
Confidence 4688899999999999999999887666655554
No 377
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=29.71 E-value=69 Score=24.45 Aligned_cols=28 Identities=0% Similarity=0.011 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
...|..+||+..|+|+.|++++......
T Consensus 123 ~g~s~~EIA~~lgis~~tV~~~~~ra~~ 150 (164)
T 3mzy_A 123 RGYSYREIATILSKNLKSIDNTIQRIRK 150 (164)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4569999999999999999999877644
No 378
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=29.59 E-value=77 Score=28.41 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=25.9
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCHHHHHHHh
Q 023151 138 SRPVFTAVAFYLCAKKHKLKVDKLKLIEVC 167 (286)
Q Consensus 138 ~pp~~AAAAlY~A~~~~k~kvtQ~kla~~s 167 (286)
+-+..++|++.....+.+...+..+|++.+
T Consensus 105 sssa~a~a~l~al~~~~~~~l~~~~l~~la 134 (306)
T 3pyf_A 105 GGSADAAAVLVAMNSLWELNVPRRDLRMLA 134 (306)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCcCHHHHHHHH
Confidence 467789999999999999999999888765
No 379
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=29.39 E-value=70 Score=24.11 Aligned_cols=43 Identities=7% Similarity=-0.123 Sum_probs=32.4
Q ss_pred ChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 138 SRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 138 ~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
+++.+..+.-|+-.... ..++=.+||+.+|+++.+|.+++++.
T Consensus 5 ~~~~~~~~~~~i~~~~~-~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (120)
T 3mkl_A 5 QPNMRTRVCTVINNNIA-HEWTLARIASELLMSPSLLKKKLREE 47 (120)
T ss_dssp CCCHHHHHHHHHHTSTT-SCCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhcc-CCCCHHHHHHHHCcCHHHHHHHHHHc
Confidence 34556666666655444 47899999999999999999998773
No 380
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=29.34 E-value=62 Score=25.49 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=29.2
Q ss_pred CCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 154 HKL-KVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 154 ~k~-kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
.|. .+|=.+||+.+||++.||-+.+.+..++..+++
T Consensus 20 ~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 56 (185)
T 2yve_A 20 YSLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMH 56 (185)
T ss_dssp SCSTTCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred cChhhccHHHHHHHhCCChHHHHHhCcCHHHHHHHHH
Confidence 443 689999999999999999999987766655554
No 381
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=29.11 E-value=64 Score=25.98 Aligned_cols=30 Identities=13% Similarity=-0.026 Sum_probs=27.7
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Q 023151 62 DRKTAIKLSGMSEKAYNRSFNSLQNSIGFK 91 (286)
Q Consensus 62 d~~e~~k~sg~~~k~y~~~yr~l~~~LgL~ 91 (286)
++..+++..|++.+.+++..+.|+..||.+
T Consensus 40 S~s~AA~~L~iSqsavS~~I~~LE~~lG~~ 69 (135)
T 2ijl_A 40 SISAAGRAMDMSYRRAWLLVDALNHMFRQP 69 (135)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHBSSC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHCCe
Confidence 566899999999999999999999999985
No 382
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=29.06 E-value=1.4e+02 Score=20.41 Aligned_cols=42 Identities=5% Similarity=-0.056 Sum_probs=30.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
.++..++++.+|++...|.+- ++ |-..+ -.+.+||..|||+.
T Consensus 24 glsq~~lA~~~gis~~~i~~~----e~--g~~~~~~~~l~~ia~~l~v~~ 67 (82)
T 3s8q_A 24 GMTQEDLAYKSNLDRTYISGI----ER--NSRNLTIKSLELIMKGLEVSD 67 (82)
T ss_dssp TCCHHHHHHHHTCCHHHHHHH----HT--TCCCCBHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHhCcCHHHHHHH----HC--CCCCCCHHHHHHHHHHHCcCH
Confidence 468899999999998766543 22 43222 26899999999986
No 383
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=29.06 E-value=73 Score=22.43 Aligned_cols=28 Identities=4% Similarity=-0.124 Sum_probs=19.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
|.+..++++..|+++..+.+.++.|+..
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~L~~~ 41 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLLLEKA 41 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 5677777777777777777777766653
No 384
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=29.04 E-value=1e+02 Score=22.13 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=9.4
Q ss_pred CCcHHHHHHHhCCcc
Q 023151 93 ELDIRELGIRFGCIR 107 (286)
Q Consensus 93 ~~~I~~ia~qlg~s~ 107 (286)
..++.+||.+||++.
T Consensus 31 ~~t~~eLA~~Lgvs~ 45 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPK 45 (77)
T ss_dssp CEEHHHHHHHHCCCH
T ss_pred CcCHHHHHHHHCcCH
Confidence 456666666666665
No 385
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=28.99 E-value=1.1e+02 Score=26.71 Aligned_cols=122 Identities=13% Similarity=0.090 Sum_probs=70.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC-----------CcHHHHHHH--------------------h----
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE-----------LDIRELGIR--------------------F---- 103 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~-----------~~I~~ia~q--------------------l---- 103 (286)
-+.+..++++..+++...+.+.++.|++. |+=.. +++.+-+.. +
T Consensus 49 ~~~~~~el~~~l~~~~~t~t~~l~rLe~~-G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~~~~~~eq~s~E~~~~~~ 127 (250)
T 1p4x_A 49 NTLPFKKIVSDLCYKQSDLVQHIKVLVKH-SYISKVRSKIDERNTYISISEEQREKIAERVTLFDQIIKQFNLADQSESQ 127 (250)
T ss_dssp SEEEHHHHHHHSSSCGGGTHHHHHHHHHT-TSCEEEECSSSTTSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHC-CCEEecCCCCCCCeEEEEECHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 46789999999999999999999999876 65110 111111111 1
Q ss_pred ----CCcchHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHH
Q 023151 104 ----GCIRLIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVST 179 (286)
Q Consensus 104 ----g~s~v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~k 179 (286)
+|..+.+.+..+-..+. .++. ..+++++.|..-. .-...-+..+++.+||+..++++.|+..+.+
T Consensus 128 ~~~~~~~~l~~~~~~~~~~~~-~~~~--------~~gLt~~q~~vL~--~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~ 196 (250)
T 1p4x_A 128 MIPKDSKEFLNLMMYTMYFKN-IIKK--------HLTLSFVEFTILA--IITSQNKNIVLLKDLIETIHHKYPQTVRALN 196 (250)
T ss_dssp CSCCSHHHHHHHHHHHHHHHH-HHHH--------HCSSCHHHHHHHH--HHHTTTTCCEEHHHHHHHSSSCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHH-HHHh--------hCCCCHHHHHHHH--HHHhCCCCCcCHHHHHHHHCCChhhHHHHHH
Confidence 12222222222222222 1111 1234566554322 1111112358999999999999999999999
Q ss_pred HHHHhhhhhhhcccccCC
Q 023151 180 TMKDLCHDVFGIAKEKKD 197 (286)
Q Consensus 180 e~~~~c~d~~~i~~~~~~ 197 (286)
.|++ -|.-....+
T Consensus 197 rLe~-----~GlV~R~~~ 209 (250)
T 1p4x_A 197 NLKK-----QGYLIKERS 209 (250)
T ss_dssp HHHH-----HTSSEEEEC
T ss_pred HHHH-----CCCEEeeCC
Confidence 9977 566555543
No 386
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=28.91 E-value=50 Score=27.09 Aligned_cols=48 Identities=15% Similarity=-0.031 Sum_probs=39.1
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~s~ 107 (286)
..+.++|++..+++.+.+..-.+.|.+-||++....+-.+|.+.|+.+
T Consensus 174 g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~~~~~~~l~~~a~~~~~~~ 221 (225)
T 3klo_A 174 GASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWAKNNIGIE 221 (225)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHTTTSCCSSHHHHHHHHHHHCCC-
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhcccc
Confidence 468889999999999999988888999999887777777777777665
No 387
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=28.78 E-value=85 Score=22.79 Aligned_cols=42 Identities=5% Similarity=-0.013 Sum_probs=30.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhC-CCCC--CcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIG-FKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~Lg-L~~~--~~I~~ia~qlg~s~ 107 (286)
.++..++++..|++...|.+-.+ | -..+ -.+..||..|||+.
T Consensus 14 gltq~~lA~~~gis~~~i~~~e~------g~~~~p~~~~l~~ia~~l~v~~ 58 (111)
T 1b0n_A 14 GYSLSELAEKAGVAKSYLSSIER------NLQTNPSIQFLEKVSAVLDVSV 58 (111)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHT------TCCSCCCHHHHHHHHHHHTCCH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHc------CCCCCCCHHHHHHHHHHHCcCH
Confidence 36889999999999877755332 4 2222 25889999999985
No 388
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=28.77 E-value=41 Score=25.55 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.6
Q ss_pred CcHHHHHHHhCCcc-hHHHHHHHHHH
Q 023151 94 LDIRELGIRFGCIR-LIPLVQKGLSL 118 (286)
Q Consensus 94 ~~I~~ia~qlg~s~-v~~~A~eiL~~ 118 (286)
|++.+||.+||+|. .++.|...|+.
T Consensus 44 ps~~eLa~~lgVSr~tVr~al~~L~~ 69 (102)
T 2b0l_A 44 LVASKIADRVGITRSVIVNALRKLES 69 (102)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 38999999999999 88888777774
No 389
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=28.74 E-value=55 Score=25.22 Aligned_cols=27 Identities=11% Similarity=0.023 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
....+=.+||..+|+++.+|.++++..
T Consensus 91 ~~~~sl~~lA~~~g~S~~~f~r~Fk~~ 117 (133)
T 1u8b_A 91 ETPVTLEALADQVAMSPFHLHRLFKAT 117 (133)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 567889999999999999999999998
No 390
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=28.67 E-value=1e+02 Score=23.23 Aligned_cols=42 Identities=12% Similarity=-0.046 Sum_probs=30.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
.++..++++..|++...|.+-- + |-..+ -.+.+||..|||+.
T Consensus 36 gltq~elA~~~gis~~~is~~E----~--G~~~ps~~~l~~ia~~l~v~~ 79 (111)
T 3mlf_A 36 GLTQKELGDLFKVSSRTIQNME----K--DSTNIKDSLLSKYMSAFNVKY 79 (111)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHH----H--CCTTCCHHHHHHHHHHHTCCG
T ss_pred CCCHHHHHHHHCcCHHHHHHHH----C--CCCCCCHHHHHHHHHHhCcCH
Confidence 3678899999999887765433 2 43222 26899999999975
No 391
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=28.66 E-value=76 Score=27.54 Aligned_cols=56 Identities=16% Similarity=0.091 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHH-hCCCCC---CcHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccC
Q 023151 75 KAYNRSFNSLQNS-IGFKNE---LDIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTS 134 (286)
Q Consensus 75 k~y~~~yr~l~~~-LgL~~~---~~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~ 134 (286)
..|.+-+..|... +|++.. |+.++||.+||+|. +++.|...|.. .++..- .|++..
T Consensus 14 ~~y~~i~~~l~~~I~~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~---~G~i~~-~g~Gt~ 74 (248)
T 3f8m_A 14 LKHQVVRAELDRMLDGMRIGDPFPAEREIAEQFEVARETVRQALRELLI---DGRVER-RGRTTV 74 (248)
T ss_dssp CHHHHHHHHHHHHHHHCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHH---TTSEEE-ETTEEE
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHH---CCCEEe-CCCEEE
Confidence 3455555555542 244443 48999999999999 99999888774 555444 666543
No 392
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=28.47 E-value=55 Score=28.44 Aligned_cols=35 Identities=6% Similarity=-0.056 Sum_probs=29.1
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 155 KLKV-DKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 155 k~kv-tQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
|.++ +..+|++.-|||..|+|+-+..|.+ .|+-..
T Consensus 33 g~~lPse~~La~~~~vSr~tvr~Al~~L~~-----~G~i~~ 68 (248)
T 3f8m_A 33 GDPFPAEREIAEQFEVARETVRQALRELLI-----DGRVER 68 (248)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHH-----TTSEEE
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCEEe
Confidence 3456 8999999999999999999999987 555444
No 393
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=28.37 E-value=1e+02 Score=22.79 Aligned_cols=41 Identities=10% Similarity=0.094 Sum_probs=30.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 61 FDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 61 rd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
++..++++..|+++..|.+-- + |-..+ -.+.+||..|||+.
T Consensus 23 lsq~~lA~~~gis~~~i~~~e----~--g~~~p~~~~l~~la~~l~v~~ 65 (114)
T 3op9_A 23 LKNHQIAELLNVQTRTVAYYM----S--GETKPDIEKLIRLATYFHLSI 65 (114)
T ss_dssp CCHHHHHHHHTSCHHHHHHHH----H--TSSCCCHHHHHHHHHHHTCCH
T ss_pred CCHHHHHHHHCcCHHHHHHHH----c--CCCCCCHHHHHHHHHHhCCCH
Confidence 578899999999988776533 2 43222 25889999999985
No 394
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=28.34 E-value=75 Score=25.31 Aligned_cols=40 Identities=10% Similarity=0.080 Sum_probs=25.6
Q ss_pred HHHHHHhhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Q 023151 49 CLELAASRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGF 90 (286)
Q Consensus 49 cLylAcr~~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL 90 (286)
.+|+|.. .+-|++.+++++..|++...+.+.+..|.+ .|+
T Consensus 20 L~~La~~-~~~~~~~~~iA~~~~i~~~~l~kil~~L~~-~Gl 59 (149)
T 1ylf_A 20 LSILKNN-PSSLCTSDYMAESVNTNPVVIRKIMSYLKQ-AGF 59 (149)
T ss_dssp HHHHHHS-CGGGCCHHHHHHHHTSCHHHHHHHHHHHHH-TTS
T ss_pred HHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHH-CCc
Confidence 3444442 345677777777777777777777777765 443
No 395
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=28.30 E-value=74 Score=24.85 Aligned_cols=47 Identities=9% Similarity=0.161 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 142 FTAVAFYLCAKKHK-LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 142 ~AAAAlY~A~~~~k-~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
+..||+=+-.. .| ..+|=.+||+.+||++.||-+.+.+-.++...++
T Consensus 17 Il~aa~~l~~~-~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 64 (202)
T 3lwj_A 17 ILTCSLDLFIE-KGYYNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLL 64 (202)
T ss_dssp HHHHHHHHHHH-HCTTTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCcccCCHHHHHHHhCCCchhHHHHcCCHHHHHHHHH
Confidence 33344333333 35 4689999999999999999998877655554444
No 396
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=28.30 E-value=1.1e+02 Score=23.21 Aligned_cols=26 Identities=4% Similarity=-0.022 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
..-++.+.|...|++..|++.+.+..
T Consensus 70 ~~gn~~~AA~~LGIsR~TL~rkLkk~ 95 (98)
T 1eto_A 70 TLGNQTRAALMMGINRGTLRKKLKKY 95 (98)
T ss_dssp TTTCHHHHHHHHTSCHHHHHHHHHHT
T ss_pred hCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 34578899999999999999887653
No 397
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=28.21 E-value=71 Score=24.81 Aligned_cols=48 Identities=6% Similarity=-0.030 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 142 FTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 142 ~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
+-.||+=+-...-=..+|=.+||+.+||++.||-+.+.+-.++-..++
T Consensus 19 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 66 (203)
T 3f1b_A 19 MLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACI 66 (203)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHHhCCHHHHHHHHH
Confidence 333444333333224789999999999999999999877666544444
No 398
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=28.18 E-value=68 Score=25.09 Aligned_cols=36 Identities=11% Similarity=0.037 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
-.+++.+||+..|+++.|+....+.|++ -|+-....
T Consensus 59 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~-----~Glv~r~~ 94 (162)
T 3k0l_A 59 PNLSNAKLAERSFIKPQSANKILQDLLA-----NGWIEKAP 94 (162)
T ss_dssp TTCCHHHHHHHHTSCGGGHHHHHHHHHH-----TTSEEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH-----CcCeEecC
Confidence 3799999999999999999999999987 56655543
No 399
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=28.01 E-value=92 Score=24.99 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=26.6
Q ss_pred HHHHHHhCCCCCCcHHHHHHHhCCcc--hHHHHHHHHH
Q 023151 82 NSLQNSIGFKNELDIRELGIRFGCIR--LIPLVQKGLS 117 (286)
Q Consensus 82 r~l~~~LgL~~~~~I~~ia~qlg~s~--v~~~A~eiL~ 117 (286)
+.|.+.|.-+.++++.+||.++|+|+ +.+...++.+
T Consensus 6 ~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 6 RKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEE 43 (162)
T ss_dssp HHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45667777777889999999999999 5554444433
No 400
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=27.91 E-value=61 Score=25.71 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=29.0
Q ss_pred hCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 153 KHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 153 ~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
..|..+|=.+||+.+||++.||-+.+.+-.++-..++
T Consensus 28 ~~G~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~ 64 (196)
T 2qwt_A 28 AEGLGVPMDEIARRAGVGAGTVYRHFPTKQALVVAVA 64 (196)
T ss_dssp HTCTTSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHH
Confidence 3556799999999999999999998877555544444
No 401
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=27.89 E-value=81 Score=27.38 Aligned_cols=41 Identities=12% Similarity=0.052 Sum_probs=29.8
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
|++|..-|.+.--+. ....|+.+||+..|+++.+++++..-
T Consensus 117 ~L~~~E~a~~~~~l~----~~g~t~~~iA~~lG~s~~~V~~~l~l 157 (230)
T 1vz0_A 117 DLSPVEEARGYQALL----EMGLTQEEVARRVGKARSTVANALRL 157 (230)
T ss_dssp TCCHHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 556776655432222 45689999999999999999887653
No 402
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=27.86 E-value=42 Score=26.12 Aligned_cols=34 Identities=9% Similarity=0.047 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
..+|=.+||+.+||++.||-+.+.+-.++-..++
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 64 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALA 64 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 7899999999999999999998877655544444
No 403
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=27.79 E-value=64 Score=23.67 Aligned_cols=34 Identities=12% Similarity=0.111 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
-..+..+|++..|+++.|+....+.|++ .|+-..
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~-----~gli~~ 66 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQA-----CGLVES 66 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHH-----TTSEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCeeE
Confidence 3589999999999999999999999977 555544
No 404
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=27.69 E-value=59 Score=28.11 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=26.0
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKV-DKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kv-tQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
|.++ +..+||+..|||..|+|+-+..|.+
T Consensus 31 g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 60 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVRQALSNLVN 60 (243)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3456 7899999999999999999999987
No 405
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=27.61 E-value=87 Score=21.88 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=29.5
Q ss_pred CCCCHHHHHHHh-----CCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 156 LKVDKLKLIEVC-----GTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 156 ~kvtQ~kla~~s-----gvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
..++-.+|++.. +++.+|+.+..+.|++ .|+-...
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~-----~Glv~~~ 71 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD-----AGIVTRH 71 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-----HTSEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH-----CCCeEEE
Confidence 578999999999 9999999999999977 5655543
No 406
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=27.59 E-value=57 Score=22.25 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=20.5
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 158 VDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 158 vtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
-++.+.|...|++..|+.+..+.+
T Consensus 33 gn~~~aA~~LGisr~tL~rklkk~ 56 (63)
T 3e7l_A 33 YDLKRTAEEIGIDLSNLYRKIKSL 56 (63)
T ss_dssp TCHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHh
Confidence 457789999999999999988765
No 407
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=27.54 E-value=75 Score=27.45 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHH
Q 023151 142 FTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVS 178 (286)
Q Consensus 142 ~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ 178 (286)
|==+=-|......+..-+|++||+..|+|+..|.+-.
T Consensus 27 yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L 63 (189)
T 3mky_B 27 YERGQRYASRLQNEFAGNISALADAENISRKIITRCI 63 (189)
T ss_dssp HHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHH
Confidence 3335568888899999999999999999999886544
No 408
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=27.42 E-value=60 Score=27.94 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=26.0
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKV-DKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kv-tQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
|.++ +-.+||+..|||..|+|+-+..+.+
T Consensus 26 g~~lPse~~La~~~~vSr~tvr~Al~~L~~ 55 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITKSLELLEQ 55 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456 7899999999999999999999987
No 409
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=27.33 E-value=1e+02 Score=27.23 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHh---CCCCC---CcHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccc
Q 023151 74 EKAYNRSFNSLQNSI---GFKNE---LDIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRK 132 (286)
Q Consensus 74 ~k~y~~~yr~l~~~L---gL~~~---~~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~ 132 (286)
...|.+.+..|.... .+++. |+..+||.+||+|. +++.|...|.. .++..-..|++
T Consensus 28 ~~~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~---~G~i~~~~g~G 90 (272)
T 3eet_A 28 QPAYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMA---EGLVEGRSGSG 90 (272)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHH---TTSEEECCC--
T ss_pred CCHHHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHH---CCCEEEecCce
Confidence 345777777777655 23332 48999999999999 99999888874 44433334544
No 410
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=27.24 E-value=71 Score=26.33 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=39.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCC------CCcHHHHHHHhCCcchHHHHHHHHHHHH
Q 023151 61 FDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKN------ELDIRELGIRFGCIRLIPLVQKGLSLFK 120 (286)
Q Consensus 61 rd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~------~~~I~~ia~qlg~s~v~~~A~eiL~~~k 120 (286)
.+...+++..|++...+.+..+.|+.+||.+- ++.+...+..| ...|.++++.+.
T Consensus 16 ~s~t~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~~~lT~~G~~l-----~~~a~~~l~~~~ 76 (291)
T 3szp_A 16 GSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERF-----YKDCSPLLERLA 76 (291)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCEEEETTEEEECHHHHHH-----HHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCceEeecCCCcccCHhHHHH-----HHHHHHHHHHHH
Confidence 35677899999999999999999999999853 22344444444 556666666554
No 411
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=27.23 E-value=50 Score=27.72 Aligned_cols=36 Identities=11% Similarity=0.162 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
|.+++..+||+..|||..++|.-.+.|+. .|+-...
T Consensus 37 G~~L~E~~La~~lgVSRtpVREAl~~L~~-----eGlv~~~ 72 (222)
T 3ihu_A 37 GQRLVETDLVAHFGVGRNSVREALQRLAA-----EGIVDLQ 72 (222)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEC
T ss_pred CCccCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEEe
Confidence 56788999999999999999999999987 6766554
No 412
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.16 E-value=66 Score=24.25 Aligned_cols=43 Identities=7% Similarity=-0.045 Sum_probs=31.1
Q ss_pred CCCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 135 ADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 135 ~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..+++.......++. ...+.++||+..|+++.|+++....+..
T Consensus 33 ~~Lt~re~~Vl~l~~------~G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA------EGFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp SSCCHHHHHHHHHHH------HTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH------cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 335666654443321 3468899999999999999999988743
No 413
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=27.15 E-value=2.9e+02 Score=23.45 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC-------------------CCCCcHHHHHHHhCCcchHHHH
Q 023151 58 DVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGF-------------------KNELDIRELGIRFGCIRLIPLV 112 (286)
Q Consensus 58 ~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL-------------------~~~~~I~~ia~qlg~s~v~~~A 112 (286)
.-+++++++++.+|+++..+.+.++. ..|. ....+|.+||.++|-+......
T Consensus 17 ~~~~~~~~la~~~~~s~~~l~r~f~~---~~g~s~~~~~~~~Rl~~a~~~L~~~~~~i~~ia~~~Gf~~~~~f~ 87 (292)
T 1d5y_A 17 DQPLSLDNVAAKAGYSKWHLQRMFKD---VTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFT 87 (292)
T ss_dssp SSSCCCHHHHTTTSSCHHHHHHHHHH---HHSSCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHH---HHCcCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCCCCHHHHH
Confidence 55677777777777777666655442 2232 2334799999999988854443
No 414
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=27.04 E-value=71 Score=25.28 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhh
Q 023151 141 VFTAVAFYLCAKKHKL-KVDKLKLIEVCGTSETEFASVSTTMKDLCHDV 188 (286)
Q Consensus 141 ~~AAAAlY~A~~~~k~-kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~ 188 (286)
.+..||+=+... .|. .+|=.+||+.+||++.||-+.+.+..++-..+
T Consensus 16 ~Il~aa~~l~~~-~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~ 63 (189)
T 3vp5_A 16 RVYDACLNEFQT-HSFHEAKIMHIVKALDIPRGSFYQYFEDLKDAYFYV 63 (189)
T ss_dssp HHHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCcccccHHHHHHHhCCChHHHHHHCCCHHHHHHHH
Confidence 344455544444 454 88999999999999999998887655544333
No 415
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=27.03 E-value=1.1e+02 Score=26.33 Aligned_cols=58 Identities=12% Similarity=0.021 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhC---CCCC---CcHHHHHHHhCCcc-hHHHHHHHHHHHHHhhhhccccccccCC
Q 023151 75 KAYNRSFNSLQNSIG---FKNE---LDIRELGIRFGCIR-LIPLVQKGLSLFKDRFTAALPASRKTSA 135 (286)
Q Consensus 75 k~y~~~yr~l~~~Lg---L~~~---~~I~~ia~qlg~s~-v~~~A~eiL~~~ke~~~~~L~~gk~~~~ 135 (286)
..|.+.+..|..... ++++ |+.++||.+||+|. +++.|...|.. .++..-..|++..+
T Consensus 9 ~~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~---~G~i~~~~g~G~~V 73 (236)
T 3edp_A 9 PLFEVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVE---EGLVVRKNGVGLYV 73 (236)
T ss_dssp CHHHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHH---TTSEEEETTTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH---CCCEEEECCceEEE
Confidence 346666666666542 3332 58999999999999 99999888874 54443344555433
No 416
>4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens}
Probab=27.03 E-value=2.3e+02 Score=27.20 Aligned_cols=66 Identities=11% Similarity=0.046 Sum_probs=43.0
Q ss_pred HHHHHHHhCCcc--hHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Q 023151 96 IRELGIRFGCIR--LIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCG 168 (286)
Q Consensus 96 I~~ia~qlg~s~--v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sg 168 (286)
+.+||..|+++. +++..=.+.+..-.. ...|--+| +-.++--.|+|..|+..+..++-++|+..-.
T Consensus 286 l~~LC~~L~~~~~~l~~~IWt~fe~~l~~-~teLm~dR------HLDQiiLCsiY~i~Kv~~~~~tFk~Ii~~Yr 353 (411)
T 4ell_A 286 LNTLCERLLSEHPELEHIIWTLFQHTLQN-EYELMRDR------HLDQIMMCSMYGICKVKNIDLKFKIIVTAYK 353 (411)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHH-CGGGGTTS------CHHHHHHHHHHHHHHTTTCCCCHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHh-hhHhhccc------cHHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 889999998765 655443333322211 12222233 4567888999999999998888777776443
No 417
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=26.96 E-value=73 Score=27.63 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
+..+..++||+..|||+.|++...+-|.+ .|+-...
T Consensus 28 ~~~V~~~~LA~~LgvS~~SV~~~lkkL~e-----~GLV~~~ 63 (200)
T 2p8t_A 28 KEPLGRKQISERLELGEGSVRTLLRKLSH-----LDIIRSK 63 (200)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEC
T ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHH-----CCCEEEe
Confidence 47799999999999999999999999987 5555444
No 418
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=26.73 E-value=55 Score=27.47 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=23.4
Q ss_pred HhCCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 152 KKHKLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 152 ~~~k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
.......||.+||+.+|+++.||.+..+.
T Consensus 25 ~r~~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 25 KKNELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp HTTTTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 33445579999999999999999987653
No 419
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=26.64 E-value=55 Score=26.94 Aligned_cols=43 Identities=19% Similarity=0.105 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCcHHHHHHHhC--------------Ccc-hHHHHHHHHHH
Q 023151 75 KAYNRSFNSLQNSIGFKNELDIRELGIRFG--------------CIR-LIPLVQKGLSL 118 (286)
Q Consensus 75 k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg--------------~s~-v~~~A~eiL~~ 118 (286)
.-|.+++..|....--. ++++.+||..|| +|. +++.|...|+.
T Consensus 50 ~~y~ria~~lr~~i~~g-~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~ 107 (150)
T 2v7f_A 50 WWYYRVASILRRVYLDG-PVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEA 107 (150)
T ss_dssp HHHHHHHHHHHHHHHHC-SBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHH
Confidence 34778887777654211 678899999999 999 88888777774
No 420
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=26.55 E-value=1.7e+02 Score=21.50 Aligned_cols=43 Identities=5% Similarity=-0.068 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
..++.+++++.+|+++..|.+- ++ |-..+ -.+.+||..|||+.
T Consensus 40 ~gltq~elA~~~gis~~~is~i----E~--G~~~ps~~~l~~ia~~l~v~~ 84 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGI----ER--NSRNLTIKSLELIMKGLEVSD 84 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH----HT--TCSCCBHHHHHHHHHHTTCCH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH----HC--CCCCCCHHHHHHHHHHHCcCH
Confidence 3458899999999998776543 22 43222 26899999999986
No 421
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=26.32 E-value=88 Score=24.95 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=27.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCC
Q 023151 61 FDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGC 105 (286)
Q Consensus 61 rd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~ 105 (286)
.+.++|+...|++.+.+..-.+.+.+.||.+.....-.+|.++|.
T Consensus 158 ~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~~~~~~~~i~~a~~~~~ 202 (208)
T 1yio_A 158 LMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLVEKYES 202 (208)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHC--
T ss_pred CcHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 466777777777777777777777777776554433344444443
No 422
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=26.26 E-value=48 Score=26.67 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Q 023151 41 GEVCKAVICLELAASR---FDVIFDRKTAIKLSGMSEKAYNRSFNSLQNS 87 (286)
Q Consensus 41 s~~~~aaacLylAcr~---~~iprd~~e~~k~sg~~~k~y~~~yr~l~~~ 87 (286)
+.....+..|..-++. ..+|++.++++.+.|+++..+.+.++.|.+.
T Consensus 141 ~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~ 190 (216)
T 4ev0_A 141 EARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEE 190 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence 4455555554332322 1367899999999999999999999999875
No 423
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=26.24 E-value=40 Score=26.07 Aligned_cols=50 Identities=10% Similarity=0.081 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 140 PVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 140 p~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
--+..||+=+-+..-=..+|=.+||+.+|||+.||-+.+.+-.++...++
T Consensus 13 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 62 (196)
T 3col_A 13 VKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVY 62 (196)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHHhCCHHHHHHHHH
Confidence 33444554444444333689999999999999999988877655555444
No 424
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=26.16 E-value=80 Score=24.83 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 141 VFTAVAFYLCAKKHK-LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 141 ~~AAAAlY~A~~~~k-~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
.+..||+=+-. ..| ..+|=.+||+.+||++.||-+.+.+-.++-..++
T Consensus 35 ~Il~aa~~l~~-~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~ 83 (218)
T 3dcf_A 35 QIIKVATELFR-EKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIV 83 (218)
T ss_dssp HHHHHHHHHHH-HTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 34444444433 355 4699999999999999999998876555444433
No 425
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=26.03 E-value=73 Score=26.91 Aligned_cols=56 Identities=13% Similarity=0.164 Sum_probs=43.4
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCCC------CCcHHHHHHHhCCcchHHHHHHHHHHHHHh
Q 023151 62 DRKTAIKLSGMSEKAYNRSFNSLQNSIGFKN------ELDIRELGIRFGCIRLIPLVQKGLSLFKDR 122 (286)
Q Consensus 62 d~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~------~~~I~~ia~qlg~s~v~~~A~eiL~~~ke~ 122 (286)
++..+++..|++...+.+..+.|+.+||.+- ++.+..-+..| ...|.++++.+.+.
T Consensus 26 s~s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R~~~~~~lT~~G~~l-----~~~a~~~l~~~~~~ 87 (310)
T 2esn_A 26 NVGTAASELAISASAFSHALGRLRQGLDDELFLRQGNRMQPTQRAEHL-----AAAVAAALRALGEG 87 (310)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEEETTEEEECHHHHHH-----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCChHHHHHHHHHHHHhhCCcceeecCCCccccHHHHHH-----HHHHHHHHHHHHhh
Confidence 6678999999999999999999999999864 22344444444 77888888877753
No 426
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=26.00 E-value=41 Score=29.88 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
..++|-++||+.+|||..|+++....
T Consensus 7 ~~~~Ti~diA~~aGVS~~TVSrvLn~ 32 (366)
T 3h5t_A 7 QQYGTLASIAAKLGISRTTVSNAYNR 32 (366)
T ss_dssp CCTTHHHHHHHHHTSCHHHHHHHHHC
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHCC
Confidence 45788999999999999999988764
No 427
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A
Probab=25.97 E-value=48 Score=31.63 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHH
Q 023151 143 TAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVS 178 (286)
Q Consensus 143 AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ 178 (286)
.||++++..-...+..||.++|+.+||....|...+
T Consensus 229 ~aagv~LR~ar~ReglTQ~~LAe~TGIPq~hISeMe 264 (443)
T 3g7d_A 229 VSAGSVLDLFLARRAHTRTSAAEAAGVPPADLEAAL 264 (443)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHh
Confidence 457888899999999999999999999998886544
No 428
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=25.81 E-value=36 Score=21.35 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=18.4
Q ss_pred cHHHHHHHhCCCCChhHHHHHHHHH
Q 023151 2 DLSDIAKKLGLSDSKQLIRKAAEIR 26 (286)
Q Consensus 2 ei~ria~kLgL~e~~~V~ekAael~ 26 (286)
.|+.+|.+.|.+.+ .+++.|-+.|
T Consensus 16 ~Ld~~a~~~g~srS-~~ir~ai~~~ 39 (45)
T 2cpg_A 16 NLEKMAREMGLSKS-AMISVALENY 39 (45)
T ss_dssp HHHHHHHHHTCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHCcCHH-HHHHHHHHHH
Confidence 37788999999876 7777776655
No 429
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=25.77 E-value=40 Score=22.75 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=14.9
Q ss_pred chhHHHHHHHHHhhhhhh
Q 023151 240 EKVAYEEWKTSVLASNRN 257 (286)
Q Consensus 240 ~~~~Ye~WK~~il~~~~~ 257 (286)
+..|+|.||+.||+.-..
T Consensus 5 ~~~dle~~KqEIL~E~Rk 22 (45)
T 1use_A 5 DYSDLQRVKQELLEEVKK 22 (45)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 457999999999987663
No 430
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=25.73 E-value=87 Score=24.56 Aligned_cols=49 Identities=12% Similarity=0.195 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 141 VFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 141 ~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
.+..||+=+-...-=..+|=.+||+.+|||+.||-+.+.+-.++-..++
T Consensus 18 ~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 66 (212)
T 3knw_A 18 HILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELL 66 (212)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHH
Confidence 3444444444443335799999999999999999998877555444443
No 431
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=25.62 E-value=1.6e+02 Score=20.09 Aligned_cols=41 Identities=7% Similarity=-0.111 Sum_probs=30.2
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhC--Ccc
Q 023151 62 DRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFG--CIR 107 (286)
Q Consensus 62 d~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg--~s~ 107 (286)
+..++++..|++...|.+-.+ --.++ .-.+.+||..|| ++.
T Consensus 13 sq~~lA~~lgvs~~~is~~e~----g~~~p-~~~l~~ia~~l~~~v~~ 55 (79)
T 3bd1_A 13 SVSALAASLGVRQSAISNWRA----RGRVP-AERCIDIERVTNGAVIC 55 (79)
T ss_dssp SHHHHHHHHTCCHHHHHHHHH----HTCCC-GGGHHHHHHHTTTSSCH
T ss_pred CHHHHHHHHCCCHHHHHHHHH----CCCCC-HHHHHHHHHHHCCCCcH
Confidence 788999999999888765433 22233 336999999999 764
No 432
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=25.58 E-value=1.3e+02 Score=21.16 Aligned_cols=43 Identities=7% Similarity=-0.054 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
..++..++++..|++...|.+- ++ |-..+ -.+.+||..|||+.
T Consensus 25 ~glsq~~lA~~~gis~~~is~~----e~--g~~~p~~~~l~~la~~l~v~~ 69 (91)
T 1x57_A 25 KGLTQKDLATKINEKPQVIADY----ES--GRAIPNNQVLGKIERAIGLKL 69 (91)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHH----HH--TCSCCCHHHHHHHHHHHTBCC
T ss_pred cCCCHHHHHHHHCcCHHHHHHH----Hc--CCCCCCHHHHHHHHHHHCcCH
Confidence 3468899999999998766443 33 33222 25888999999876
No 433
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=25.50 E-value=1.1e+02 Score=23.52 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=21.9
Q ss_pred CHHHHHH-HhCCCHHHHHHHHHHHHHHhCCCCC-CcHHHHHHHhCCcc
Q 023151 62 DRKTAIK-LSGMSEKAYNRSFNSLQNSIGFKNE-LDIRELGIRFGCIR 107 (286)
Q Consensus 62 d~~e~~k-~sg~~~k~y~~~yr~l~~~LgL~~~-~~I~~ia~qlg~s~ 107 (286)
+++++.+ ..|++..+. ..|..|.. -+.+ +++.+||..+|++.
T Consensus 13 ~~~~~l~~~~gLt~~e~-~il~~L~~---~~~~~~t~~eLa~~l~~s~ 56 (123)
T 3r0a_A 13 KVEDVIKCALNLTKADL-NVMKSFLN---EPDRWIDTDALSKSLKLDV 56 (123)
T ss_dssp EHHHHHHHHHTCCHHHH-HHHHHHHH---STTCCEEHHHHHHHHTSCH
T ss_pred cHHHHHHHHcCCCHHHH-HHHHHHHH---CCCCCcCHHHHHHHHCcCH
Confidence 4455554 466665543 23333332 2223 56777777777766
No 434
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=25.45 E-value=66 Score=28.45 Aligned_cols=36 Identities=14% Similarity=0.256 Sum_probs=30.0
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKV-DKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kv-tQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
|.++ +..+||+..|||..|+|+-+..|.+ .|+-...
T Consensus 50 g~~lPse~~La~~~~vSr~tvr~Al~~L~~-----~G~i~~~ 86 (272)
T 3eet_A 50 HTRLPSQARIREEYGVSDTVALEARKVLMA-----EGLVEGR 86 (272)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEC
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEEe
Confidence 4466 8999999999999999999999987 6665443
No 435
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=25.39 E-value=30 Score=27.81 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=16.7
Q ss_pred cHHHHHHHhCCcc-hHHHHHHHHH
Q 023151 95 DIRELGIRFGCIR-LIPLVQKGLS 117 (286)
Q Consensus 95 ~I~~ia~qlg~s~-v~~~A~eiL~ 117 (286)
++.+||..||++. -...+..+++
T Consensus 41 ~l~eia~~l~~~~~eve~vL~~iQ 64 (130)
T 2k9m_A 41 SVEEISDVLRCSVEELEKVRQKVL 64 (130)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCHHHHHHHHHHHh
Confidence 6899999999887 5555555554
No 436
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=25.29 E-value=82 Score=23.25 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
-..+..+|++..|+++.|+....+.|++ .|+-...
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~-----~Glv~~~ 72 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKS-----VHLVKAK 72 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCeEEE
Confidence 4579999999999999999999999986 5555443
No 437
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=25.17 E-value=57 Score=28.00 Aligned_cols=36 Identities=3% Similarity=0.039 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
|.+++..+||+..|||..++|.-.+.|+. .|+-...
T Consensus 49 G~~L~e~~La~~lgVSRtpVREAL~~L~~-----eGlv~~~ 84 (239)
T 2hs5_A 49 GARLSEPDICAALDVSRNTVREAFQILIE-----DRLVAHE 84 (239)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred cCEeCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEEEe
Confidence 46789999999999999999999999977 6666554
No 438
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=25.08 E-value=86 Score=24.24 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=27.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
.+|=.+||+.+||++.||-+.+.+-.++-..++
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 60 (206)
T 3dew_A 28 GVSIRELAQAAGASISMISYHFGGKEGLYAAVL 60 (206)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 788899999999999999999988666555554
No 439
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=25.08 E-value=51 Score=28.95 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=34.7
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCC
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGC 105 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~ 105 (286)
..+-.||++..|++.+.+..-++.+.+.||++...-.-.+|.++|+
T Consensus 212 G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~~~~~~~~~~a~~~gl 257 (265)
T 3qp6_A 212 GKTNWEIATILNISERTVKFHVANVIRKLNANNRTHAIVLGMHLAM 257 (265)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHHHTHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHcCC
Confidence 5688899999999999998888888888888665544445555443
No 440
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=24.96 E-value=90 Score=23.95 Aligned_cols=48 Identities=8% Similarity=0.088 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHhCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhh
Q 023151 140 PVFTAVAFYLCAKKHK-LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDV 188 (286)
Q Consensus 140 p~~AAAAlY~A~~~~k-~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~ 188 (286)
-.+-.||+=+-+. .| ..+|=.+||+.+||++.||-+.+.+-.++-..+
T Consensus 12 ~~Il~aa~~l~~~-~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 60 (195)
T 3ppb_A 12 QAILETALQLFVS-QGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQL 60 (195)
T ss_dssp HHHHHHHHHHHHH-TCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHH
Confidence 3344444444443 45 578999999999999999999887755544333
No 441
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=24.93 E-value=92 Score=24.40 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 142 FTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 142 ~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
+-.||+=+....-=..+|=.+||+.+||++.||-+.+.+-.++-..++
T Consensus 23 Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 70 (212)
T 1pb6_A 23 ILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVL 70 (212)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHhCCCHHHHHHHHH
Confidence 333444443333225789999999999999999999877655544444
No 442
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=24.89 E-value=1e+02 Score=25.53 Aligned_cols=31 Identities=16% Similarity=0.067 Sum_probs=21.5
Q ss_pred CCcHHHHHHHhCCcchHHHHHHHHHHHHHhhhh
Q 023151 93 ELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTA 125 (286)
Q Consensus 93 ~~~I~~ia~qlg~s~v~~~A~eiL~~~ke~~~~ 125 (286)
++++.+||..||++.. .+.+.|+...+.+..
T Consensus 24 ~~s~~eia~~lgl~~~--tv~~~l~~Le~~G~i 54 (196)
T 3k2z_A 24 PPSVREIARRFRITPR--GALLHLIALEKKGYI 54 (196)
T ss_dssp CCCHHHHHHHHTSCHH--HHHHHHHHHHHTTSE
T ss_pred CCCHHHHHHHcCCCcH--HHHHHHHHHHHCCCE
Confidence 4688888888888863 355666666666543
No 443
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=24.83 E-value=66 Score=24.42 Aligned_cols=26 Identities=0% Similarity=-0.038 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
...|..+||+..|+|+.|++++...-
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rA 63 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKA 63 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 67899999999999999999988664
No 444
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=24.83 E-value=50 Score=28.97 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=20.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHH
Q 023151 158 VDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 158 vtQ~kla~~sgvt~vt~rnr~ke 180 (286)
+|-++||+.+|||..|+++....
T Consensus 1 ~ti~diA~~agVS~~TVSrvLn~ 23 (340)
T 1qpz_A 1 ATIKDVAKRANVSTTTVSHVINK 23 (340)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 46789999999999999998874
No 445
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=24.66 E-value=83 Score=24.96 Aligned_cols=47 Identities=6% Similarity=0.053 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 142 FTAVAFYLCAKKHK-LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 142 ~AAAAlY~A~~~~k-~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
+-.||+=+-.. .| ..+|=.+||+.+||++.||-+.+.+-.++...++
T Consensus 35 Il~aA~~l~~~-~G~~~~t~~~IA~~aGvs~~t~Y~~F~sK~~L~~~~~ 82 (222)
T 3bru_A 35 LIRAGLEHLTE-KGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALI 82 (222)
T ss_dssp HHHHHHHHHHH-SCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCcCcHHHHHHHhCCCcchhhhhCCCHHHHHHHHH
Confidence 44444444433 45 4789999999999999999999877666555444
No 446
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=24.49 E-value=89 Score=23.42 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHh-CCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 156 LKVDKLKLIEVC-GTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 156 ~kvtQ~kla~~s-gvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
-..++.+|++.. |+++.|+..+.+.|++ .|+-...
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~-----~GlI~r~ 69 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEK-----DGLVHRE 69 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHH-----HTSEEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHH-----CCCEEEe
Confidence 468999999999 9999999999999987 5655544
No 447
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=24.47 E-value=69 Score=22.37 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=17.6
Q ss_pred CHHHHHHHhCCCHHHHHHHHH
Q 023151 62 DRKTAIKLSGMSEKAYNRSFN 82 (286)
Q Consensus 62 d~~e~~k~sg~~~k~y~~~yr 82 (286)
+..++++.+|++...+.+.++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 678999999999988887654
No 448
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=24.33 E-value=1.2e+02 Score=22.60 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=25.0
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 158 VDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 158 vtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
++...||..+|+++.++++....+.+
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~ 46 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMD 46 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 89999999999999999999999977
No 449
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=24.32 E-value=50 Score=25.65 Aligned_cols=32 Identities=9% Similarity=0.055 Sum_probs=27.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 158 VDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 158 vtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
+|=.+||+.+||++.||-+.+.+-.++...++
T Consensus 28 ~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~ 59 (186)
T 2jj7_A 28 TSIQEIAKEAKVNVAMASYYFNGKENLYYEVF 59 (186)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHH
T ss_pred CCHHHHHHHhCCChhhhhhhcCCHHHHHHHHH
Confidence 78889999999999999999988777766665
No 450
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=24.30 E-value=82 Score=26.63 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=28.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCC
Q 023151 61 FDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKN 92 (286)
Q Consensus 61 rd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~ 92 (286)
.+...+++..|++...+.+..+.|+.+||.+-
T Consensus 17 gs~t~AA~~L~isq~avS~~i~~LE~~lg~~L 48 (305)
T 3fxq_A 17 GSLRAAAQLLHLSQPALSAAIQQLEDELKAPL 48 (305)
T ss_dssp SCHHHHHHHTTCCHHHHHHHHHHHHHHHTSCS
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCee
Confidence 36778899999999999999999999999863
No 451
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=24.22 E-value=1.3e+02 Score=23.41 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHhCCCCCC---cHHHHHHHhCCcc
Q 023151 58 DVIFDRKTAIKLSG-----MSEKAYNRSFNSLQNSIGFKNEL---DIRELGIRFGCIR 107 (286)
Q Consensus 58 ~iprd~~e~~k~sg-----~~~k~y~~~yr~l~~~LgL~~~~---~I~~ia~qlg~s~ 107 (286)
+-|.|.+++++..| +++..|++ +++ |-+..| .+.+||..||++.
T Consensus 22 ~~~lT~~elA~~~~~~G~~iS~s~is~----iE~--G~r~~Ps~~~l~~iA~~f~V~~ 73 (123)
T 3qwg_A 22 RGPHTSAEVIAALKAEGITMSAPYLSQ----LRS--GNRTNPSGATMAALANFFRIKA 73 (123)
T ss_dssp TCSCCHHHHHHHHHHTTCCCCHHHHHH----HHH--TSSCCCCHHHHHHHHHHTTSCT
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHH----HHc--CCCCCCCHHHHHHHHHHhCCCH
Confidence 45788899988887 87765543 222 554333 5899999999987
No 452
>3zua_A CLD, alpha-hemolysin translocation ATP-binding protein; C39 peptidase-like domain, ABC transporter, haemolysin, HYDR heteronuclear; NMR {Escherichia coli}
Probab=24.11 E-value=78 Score=24.61 Aligned_cols=29 Identities=14% Similarity=0.104 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHhCCC
Q 023151 45 KAVICLELAASRFDVIFDRKTAIKLSGMS 73 (286)
Q Consensus 45 ~aaacLylAcr~~~iprd~~e~~k~sg~~ 73 (286)
-..+||-+.|+.+|++++.+++....+++
T Consensus 14 cglacLa~i~~~~g~~~s~~~L~~~~~~~ 42 (142)
T 3zua_A 14 YGLYALEILAQYHNVSVNPEEIKHRFDTD 42 (142)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHTCTT
T ss_pred cHHHHHHHHHHHcCCCCCHHHHHHHcCCC
Confidence 35678888999999999999998866553
No 453
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=24.10 E-value=61 Score=25.53 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=26.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
.+|=.+||+.+||++.||-+.+.+-.++-..++
T Consensus 35 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 67 (199)
T 2rek_A 35 DASLEEIARRAGVGSATLHRHFPSRWGLLQAVF 67 (199)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred CCCHHHHHHHhCCchHHHHHHCCCHHHHHHHHH
Confidence 578899999999999999998877555544444
No 454
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=23.82 E-value=1.3e+02 Score=21.94 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=36.0
Q ss_pred cHHHHHHHhCCCCChhHHHHHHHHHHHhhhhcCCCCCCcchHHHHHHHHHHHHhhCCCCCCHHH
Q 023151 2 DLSDIAKKLGLSDSKQLIRKAAEIRRLCDVQFDSSIIGVGEVCKAVICLELAASRFDVIFDRKT 65 (286)
Q Consensus 2 ei~ria~kLgL~e~~~V~ekAael~Rla~~k~~~l~~Grs~~~~aaacLylAcr~~~iprd~~e 65 (286)
|+..+..++|+++ +...++++.+...-+| . .+-.-...+.-.+++...|.+.+.+.
T Consensus 32 el~~~l~~~~l~~-----~~l~~i~~~~D~d~dG-~--i~~~EF~~~~~~~~~~~~g~~~~~~~ 87 (99)
T 1qjt_A 32 DAAAFLKKSGLPD-----LILGKIWDLADTDGKG-V--LSKQEFFVALRLVACAQNGLEVSLSS 87 (99)
T ss_dssp HHHHHHHTSSSCH-----HHHHHHHHHHCCSSSS-S--CCSHHHHHHHHHHHHHTTTCCSSGGG
T ss_pred HHHHHHHHcCCCH-----HHHHHHHHHHCCCCCC-c--CCHHHHHHHHHHHHHHHcCCCCChhh
Confidence 5677788889874 5678899988765322 2 23344444455556667888877553
No 455
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=23.80 E-value=81 Score=22.37 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=18.6
Q ss_pred hhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 55 SRFDVIFDRKTAIKLSGMSEKAYNRSFNSLQN 86 (286)
Q Consensus 55 r~~~iprd~~e~~k~sg~~~k~y~~~yr~l~~ 86 (286)
|..|=-+|.+.+++..|+++.++-..++.|++
T Consensus 20 r~sGGildI~~~a~kygV~kdeV~~~LrrLe~ 51 (59)
T 2xvc_A 20 VNNGGFLDIEHFSKVYGVEKQEVVKLLEALKN 51 (59)
T ss_dssp HHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33444456666666666666666666666554
No 456
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=23.73 E-value=38 Score=25.72 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
-.+++.+|++..|+++.|+....+.|++ .|+-...
T Consensus 50 ~~~~~~ela~~l~~~~~tvs~~l~~L~~-----~gli~r~ 84 (142)
T 2bv6_A 50 SPVNVKKVVTELALDTGTVSPLLKRMEQ-----VDLIKRE 84 (142)
T ss_dssp SEEEHHHHHHHTTCCTTTHHHHHHHHHH-----TTSEEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHH-----CCCEEee
Confidence 3689999999999999999999999987 5555444
No 457
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=23.68 E-value=71 Score=25.44 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
..+|=.+||+.+||++.||-+.+.+-.++...++
T Consensus 42 ~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 75 (214)
T 2zb9_A 42 AQLTFERVARVSGVSKTTLYKWWPSKGALALDGY 75 (214)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
Confidence 3688899999999999999999877666555444
No 458
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=23.66 E-value=89 Score=22.47 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=22.8
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 158 VDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 158 vtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
.+..+||...||++.||++..+....
T Consensus 39 ~s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 39 ESKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 68899999999999999998877643
No 459
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=23.65 E-value=83 Score=23.22 Aligned_cols=29 Identities=7% Similarity=0.108 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 58 DVIFDRKTAIKLSGMSEKAYNRSFNSLQN 86 (286)
Q Consensus 58 ~iprd~~e~~k~sg~~~k~y~~~yr~l~~ 86 (286)
|-+.+..++++..|+++..+.++++.|..
T Consensus 31 g~~~s~~eLa~~lgvs~~tV~~~L~~L~~ 59 (110)
T 1q1h_A 31 GTEMTDEEIANQLNIKVNDVRKKLNLLEE 59 (110)
T ss_dssp CSCBCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44567777777777777777777777765
No 460
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=23.65 E-value=87 Score=24.42 Aligned_cols=42 Identities=14% Similarity=0.173 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHhCCcc-hHHHHHHHHH
Q 023151 76 AYNRSFNSLQNSIGFKNELDIRELGIRFGCIR-LIPLVQKGLS 117 (286)
Q Consensus 76 ~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~s~-v~~~A~eiL~ 117 (286)
.+...++.|...+.-...+++.+||..||++. ....+..-|+
T Consensus 37 ~~~~~~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le 79 (155)
T 2h09_A 37 LIDDYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLA 79 (155)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 34555555555553334467788888888887 5554444444
No 461
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=23.56 E-value=93 Score=22.76 Aligned_cols=27 Identities=4% Similarity=0.007 Sum_probs=24.0
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
..+..+||...|+++.||++..+....
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 468899999999999999999988754
No 462
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.52 E-value=1.1e+02 Score=26.31 Aligned_cols=46 Identities=11% Similarity=0.046 Sum_probs=31.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCC
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGC 105 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~ 105 (286)
..+.+||++..|++...+..-+....+.|+.+....+-.+|.+.|+
T Consensus 212 G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~~~~~a~~~gl 257 (258)
T 3clo_A 212 GLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKL 257 (258)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 3577777777777777777777777777777655555556665554
No 463
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=23.25 E-value=82 Score=26.69 Aligned_cols=35 Identities=14% Similarity=0.210 Sum_probs=30.1
Q ss_pred CCCC-CHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccc
Q 023151 155 KLKV-DKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKE 194 (286)
Q Consensus 155 k~kv-tQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~ 194 (286)
|.++ +..+||+..|||..++|.-.+.++. .|+-..
T Consensus 25 G~~LpsE~~La~~lgVSRtpVREAL~~L~~-----~GlV~~ 60 (239)
T 2di3_A 25 GDHLPSERALSETLGVSRSSLREALRVLEA-----LGTIST 60 (239)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHH-----HTSEEC
T ss_pred CCcCCCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCeEe
Confidence 5567 5889999999999999999999987 677665
No 464
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=23.20 E-value=1.3e+02 Score=25.60 Aligned_cols=37 Identities=11% Similarity=0.141 Sum_probs=28.8
Q ss_pred HHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 146 AFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 146 AlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
++|..... +...++.+||+..|+++.|+....+.|++
T Consensus 14 ~i~~l~~~-~~~~~~~~la~~l~vs~~tvs~~l~~Le~ 50 (226)
T 2qq9_A 14 TIYELEEE-GVTPLRARIAERLEQSGPTVSQTVARMER 50 (226)
T ss_dssp HHHHHHHH-TCCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhhc-CCCccHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45554432 44445599999999999999999999987
No 465
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=23.14 E-value=97 Score=24.59 Aligned_cols=34 Identities=9% Similarity=0.004 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
..+|=.+||+.+||++.||-+.+.+-.++-..++
T Consensus 34 ~~~s~~~IA~~agvs~~t~Y~~F~sKe~L~~~~~ 67 (221)
T 3c2b_A 34 KALTTSGLARAANCSKESLYKWFGDRDGLLAAMI 67 (221)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHhCCCHHHHHHHHH
Confidence 4588899999999999999999988766666665
No 466
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=23.02 E-value=1.5e+02 Score=22.32 Aligned_cols=42 Identities=7% Similarity=-0.068 Sum_probs=30.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
.++..++++.+|+++..|.+-- + |-..+ -.+.+||..|||+.
T Consensus 25 glsq~~lA~~~gis~~~is~~E----~--g~~~p~~~~l~~ia~~l~v~~ 68 (126)
T 3ivp_A 25 GLTREQVGAMIEIDPRYLTNIE----N--KGQHPSLQVLYDLVSLLNVSV 68 (126)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHH----H--SCCCCCHHHHHHHHHHHTCCS
T ss_pred CCCHHHHHHHhCcCHHHHHHHH----C--CCCCCCHHHHHHHHHHHCcCH
Confidence 3588999999999987775432 2 33222 26889999999986
No 467
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=23.01 E-value=1.4e+02 Score=23.69 Aligned_cols=28 Identities=14% Similarity=-0.068 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
.-.|+.+||+..|+++.++.+....+.+
T Consensus 50 ~~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 50 YFPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp CSCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4589999999999999999999999966
No 468
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=22.80 E-value=97 Score=22.50 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
-..+-.+|++..|+++.|+....+.|++ .|+-...
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~-----~Glv~~~ 69 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRE-----SGIVETR 69 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH-----CCCeEEE
Confidence 4589999999999999999999999987 6665544
No 469
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=22.79 E-value=97 Score=22.97 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=35.9
Q ss_pred CCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhC----CCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 136 DFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCG----TSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 136 D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sg----vt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
+++++.+..-. .-.. ...+|+.+|++..+ +++.|+....+.|++ -|+-...
T Consensus 7 ~lt~~~~~vL~--~l~~--~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~-----~Glv~r~ 61 (123)
T 1okr_A 7 EISSAEWEVMN--IIWM--KKYASANNIIEEIQMQKDWSPKTIRTLITRLYK-----KGFIDRK 61 (123)
T ss_dssp CCCHHHHHHHH--HHHH--HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH-----HTSEEEE
T ss_pred cCCHHHHHHHH--HHHh--CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH-----CCCeEEE
Confidence 34566654332 1112 35799999999999 899999999999977 5555443
No 470
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=22.68 E-value=1.2e+02 Score=26.21 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHhCCcchHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCC
Q 023151 77 YNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKL 156 (286)
Q Consensus 77 y~~~yr~l~~~LgL~~~~~I~~ia~qlg~s~v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~ 156 (286)
+.++++.+.+.+|.+.++.| .....+|.|.+- .+-+..++|.++....+.+.
T Consensus 60 v~~a~~~~~~~~g~~~g~~i-------------------------~i~~~iP~g~GL---GSSsa~~~a~~~al~~l~~~ 111 (296)
T 1h72_C 60 AGIVAKKMIDDFNIGKGVKI-------------------------TIKKGVKAGSGL---GSSAASSAGTAYAINELFKL 111 (296)
T ss_dssp HHHHHHHHHHHTTCCCEEEE-------------------------EEECSSCTTSSS---CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCeEE-------------------------EEEcCCCCCCCc---cHHHHHHHHHHHHHHHHhCC
Q ss_pred CCCHHHHHHHh
Q 023151 157 KVDKLKLIEVC 167 (286)
Q Consensus 157 kvtQ~kla~~s 167 (286)
..+..+|++.+
T Consensus 112 ~l~~~~l~~la 122 (296)
T 1h72_C 112 NLDKLKLVDYA 122 (296)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
No 471
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=22.62 E-value=98 Score=25.82 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHhC--CCHHHHHHHHHHHHHhh
Q 023151 145 VAFYLCAKKHKLKVDKLKLIEVCG--TSETEFASVSTTMKDLC 185 (286)
Q Consensus 145 AAlY~A~~~~k~kvtQ~kla~~sg--vt~vt~rnr~ke~~~~c 185 (286)
|.||.+ +..++-.+|+++.+ +++.+++....+|.+..
T Consensus 14 AlLf~~----~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y 52 (162)
T 1t6s_A 14 ALIFSS----EEPVNLQTLSQITAHKFTPSELQEAVDELNRDY 52 (162)
T ss_dssp HHHHHC----SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHc----CCCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHh
Confidence 777776 88999999999999 99999999999986643
No 472
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=22.54 E-value=47 Score=29.21 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
+-++|-++||+.+|||..|+++....
T Consensus 8 ~~~~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 8 KRPLTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp --CCCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 44689999999999999999987643
No 473
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=22.46 E-value=18 Score=31.85 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTT 180 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke 180 (286)
..++|-++||+.+|||..|+++....
T Consensus 2 ~~~~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 2 SLGVTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp --------------------------
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 34689999999999999999998865
No 474
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=22.40 E-value=1.2e+02 Score=22.23 Aligned_cols=43 Identities=9% Similarity=-0.020 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 59 VIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 59 iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
..++..++++..|+++..|.+-.+ |-..+ -.+..||..|||+.
T Consensus 23 ~glsq~~lA~~~gis~~~is~~e~------g~~~~~~~~l~~la~~l~~~~ 67 (113)
T 2eby_A 23 LDLKINELAELLHVHRNSVSALIN------NNRKLTTEMAFRLAKVFDTTV 67 (113)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT------TSSCCCHHHHHHHHHHHTCCH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc------CCCCCCHHHHHHHHHHHCcCH
Confidence 457889999999999877765332 32222 15889999999986
No 475
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=22.39 E-value=95 Score=24.05 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCC-CCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 142 FTAVAFYLCAKKHKL-KVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 142 ~AAAAlY~A~~~~k~-kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
+-.||+-+-. ..|. .+|=.+||+.+|||+.||-+.+.+-.++-..++
T Consensus 22 Il~aa~~l~~-~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 69 (206)
T 3kz9_A 22 LMEIALEVFA-RRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVL 69 (206)
T ss_dssp HHHHHHHHHH-HSCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHHH-hcCcccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 3444443433 3454 589999999999999999998877555444443
No 476
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=22.27 E-value=68 Score=25.18 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 154 HKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 154 ~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
.|..+|=.+||+.+||++.||-+.+.+-.++...++
T Consensus 31 ~G~~~s~~~IA~~agvs~~tlY~~F~sK~~L~~~~~ 66 (194)
T 2q24_A 31 EGLDAHLERIAREAGVGSGTLYRNFPTREALIEAAY 66 (194)
T ss_dssp HCTTCCHHHHHHHTTCCHHHHHHHCCSHHHHHHHHH
T ss_pred cCcCCCHHHHHHHhCCChHHHHHHcCCHHHHHHHHH
Confidence 344589999999999999999998877655555444
No 477
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=22.27 E-value=1.5e+02 Score=23.47 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHhC-----CCHHHHHHHHHHHHHHhCCCCCC---cHHHHHHHhCCcc
Q 023151 58 DVIFDRKTAIKLSG-----MSEKAYNRSFNSLQNSIGFKNEL---DIRELGIRFGCIR 107 (286)
Q Consensus 58 ~iprd~~e~~k~sg-----~~~k~y~~~yr~l~~~LgL~~~~---~I~~ia~qlg~s~ 107 (286)
+-+.|.+++++..| +++..|++ +++ |.+..| .+.+||..||++.
T Consensus 24 ~~~~T~~elA~~~~~~G~~is~s~is~----~E~--G~r~~Ps~~~l~~iA~~f~V~~ 75 (135)
T 3r1f_A 24 RGPHTSAEVIAALKAEGITMSAPYLSQ----LRS--GNRTNPSGATMAALANFFRIKA 75 (135)
T ss_dssp SCCCCHHHHHHHHHTTTCCCCHHHHHH----HHH--TSSCCCCHHHHHHHHHHHTSCT
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHH----HHC--CCCCCCCHHHHHHHHHHhCCCH
Confidence 46789999999888 88765543 222 654333 5899999999996
No 478
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=22.10 E-value=81 Score=24.51 Aligned_cols=48 Identities=10% Similarity=0.047 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 142 FTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 142 ~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
+-.||+=+-...-=..+|=.+||+.+|||+.||-+.+.+-.++-..++
T Consensus 22 Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 69 (208)
T 3cwr_A 22 IVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYRFASGRADLIGLLV 69 (208)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 334444333333223588999999999999999999877666555554
No 479
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=22.08 E-value=66 Score=23.62 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=19.2
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHH
Q 023151 159 DKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 159 tQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
++.+.|...||+..|+.++.+.+
T Consensus 66 n~~~aA~~LGIsr~tL~rklkk~ 88 (91)
T 1ntc_A 66 HKQEAARLLGWGAATLTAKLKEL 88 (91)
T ss_dssp CTTHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHh
Confidence 44578999999999999887765
No 480
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=21.85 E-value=1.3e+02 Score=24.68 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=36.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhCC
Q 023151 60 IFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNELDIRELGIRFGC 105 (286)
Q Consensus 60 prd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~~I~~ia~qlg~ 105 (286)
.....+++...|++...+.+-.+.+.+.||++....+-.+|.+.|+
T Consensus 213 g~~~~eia~~l~~s~~tv~~~l~~i~~kl~~~~~~elv~~~~~~gl 258 (258)
T 3p7n_A 213 GLRNKEVAARLGLSEKTVKMHRGLVMEKLNLKTSADLVRIAVEAGI 258 (258)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHcCC
Confidence 3578889999999999999988888888888776666666666553
No 481
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=21.73 E-value=1.1e+02 Score=24.29 Aligned_cols=29 Identities=3% Similarity=-0.071 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHh
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDL 184 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~ 184 (286)
...+..+||+..|+|+.|++++.......
T Consensus 155 ~g~s~~EIA~~lgis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 155 DGLSYEEIAAIMDCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TCCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999998876543
No 482
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=21.65 E-value=98 Score=26.41 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=27.8
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Q 023151 62 DRKTAIKLSGMSEKAYNRSFNSLQNSIGFK 91 (286)
Q Consensus 62 d~~e~~k~sg~~~k~y~~~yr~l~~~LgL~ 91 (286)
++..+++..|++.+.+++..+.|+..||++
T Consensus 36 s~~~aa~~l~~s~~~~s~~i~~le~~lg~~ 65 (265)
T 1b9m_A 36 SISQGAKDAGISYKSAWDAINEMNQLSEHI 65 (265)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 677889999999999999999999999984
No 483
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=21.64 E-value=1.9e+02 Score=22.74 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 140 PVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 140 p~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
.-||-.++..-+...+ . +-.+||+..++++..++++...|.+ -|+-...+
T Consensus 8 ~~yAl~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~-----aGlv~s~r 57 (145)
T 1xd7_A 8 LAVAIHILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLKK-----ADILTSRA 57 (145)
T ss_dssp HHHHHHHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHHH-----TTSEECCS
T ss_pred HHHHHHHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHHH-----CCceEeec
Confidence 4455555555555455 5 9999999999999999999999987 67766653
No 484
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=21.38 E-value=92 Score=24.99 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCC
Q 023151 58 DVIFDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKN 92 (286)
Q Consensus 58 ~iprd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~ 92 (286)
+.| ++..+.+++|+.++.++.+...|. +||+..
T Consensus 32 ~~~-nvp~L~~~TGmPRRTiQd~I~aL~-elgI~~ 64 (117)
T 3ke2_A 32 ARH-NLLSLGKLTGMPRRTLQDAIASFA-DIGIEV 64 (117)
T ss_dssp SCC-CHHHHHHHHCCCHHHHHHHHHTGG-GGTCEE
T ss_pred CCC-CHHHHHHHHCCCHhHHHHHHHHhh-hCCeEE
Confidence 777 999999999999999999999999 999854
No 485
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=21.16 E-value=92 Score=22.51 Aligned_cols=26 Identities=4% Similarity=-0.006 Sum_probs=23.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHH
Q 023151 157 KVDKLKLIEVCGTSETEFASVSTTMK 182 (286)
Q Consensus 157 kvtQ~kla~~sgvt~vt~rnr~ke~~ 182 (286)
..+..+||...||++.||++..+...
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 57889999999999999999988774
No 486
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=21.10 E-value=1.5e+02 Score=23.45 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
-..++.+|++..|+++.|+..+.+.|++ .|+-...
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~-----~GlI~r~ 70 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVE-----HGVMVAV 70 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHH-----TTSEEEE
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH-----CCCEEEE
Confidence 3689999999999999999999999987 5665544
No 487
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=21.04 E-value=1.2e+02 Score=23.59 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
..+|=.+||+.+||++.||-+.+.+-.++-..++
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~ 66 (220)
T 3lhq_A 33 SATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIW 66 (220)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCceeehhhcCCHHHHHHHHH
Confidence 4589999999999999999998877655544433
No 488
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=20.98 E-value=1.3e+02 Score=23.33 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 156 LKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 156 ~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
..+|=.+||+.+||++.||-+.+.+-.++-..++
T Consensus 27 ~~~t~~~IA~~Agvs~~tly~~F~sK~~L~~a~~ 60 (194)
T 3dpj_A 27 AQTSFVDISAAVGISRGNFYYHFKTKDEILAEVI 60 (194)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCChHHHHHHcCCHHHHHHHHH
Confidence 4689999999999999999998877655544444
No 489
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=20.75 E-value=1.2e+02 Score=24.66 Aligned_cols=48 Identities=2% Similarity=-0.125 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 142 FTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 142 ~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
+..||+=+-...-=..+|=.+||+.+||+..||-+.+.+-.++-..++
T Consensus 48 Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~~ 95 (229)
T 3bni_A 48 ILDACADLLDEVGYDALSTRAVALRADVPIGSVYRFFGNKRQMADALA 95 (229)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHHHcCCHHHHHHHHH
Confidence 333444333333334589999999999999999998877555444444
No 490
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=20.74 E-value=2e+02 Score=21.96 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhc
Q 023151 147 FYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGI 191 (286)
Q Consensus 147 lY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i 191 (286)
+-+-..+.....+-.+|++..|+++.|+....+.|++ .|+
T Consensus 49 l~IL~~L~~~~~s~~ela~~lgis~stvs~~L~~Le~-----~Gl 88 (122)
T 1r1t_A 49 LRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRN-----LRL 88 (122)
T ss_dssp HHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH-----TTS
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH-----CCC
No 491
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=20.72 E-value=66 Score=21.90 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=19.8
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHH
Q 023151 159 DKLKLIEVCGTSETEFASVSTTM 181 (286)
Q Consensus 159 tQ~kla~~sgvt~vt~rnr~ke~ 181 (286)
++.+.|...|++..|+.++.+.+
T Consensus 35 n~~~aA~~LGIsr~tL~rklkk~ 57 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKLKQY 57 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHHh
Confidence 78899999999999998887653
No 492
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=20.61 E-value=79 Score=24.85 Aligned_cols=51 Identities=10% Similarity=0.060 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhh
Q 023151 139 RPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVF 189 (286)
Q Consensus 139 pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~ 189 (286)
.-.+-.||+=+-...-=..+|=.+||+.+||+..||-+.+.+-.++-..++
T Consensus 19 r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~ 69 (207)
T 2rae_A 19 QDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFRYFPSKNAIPWGDF 69 (207)
T ss_dssp HHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHHHCSSTTTGGGCSH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhhhCCCHHHHHHHHH
Confidence 344555554444443334689999999999999999999887655544443
No 493
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=20.60 E-value=2.1e+02 Score=22.72 Aligned_cols=32 Identities=3% Similarity=-0.122 Sum_probs=18.3
Q ss_pred hhCCCC-CCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 55 SRFDVI-FDRKTAIKLSGMSEKAYNRSFNSLQN 86 (286)
Q Consensus 55 r~~~ip-rd~~e~~k~sg~~~k~y~~~yr~l~~ 86 (286)
...|.+ .+.+++++..|++..++.+.++.|..
T Consensus 45 ~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 45 LEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp HTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344433 46666666666666666666655554
No 494
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=20.58 E-value=1.1e+02 Score=23.45 Aligned_cols=15 Identities=0% Similarity=0.020 Sum_probs=9.3
Q ss_pred CCcHHHHHHHhCCcc
Q 023151 93 ELDIRELGIRFGCIR 107 (286)
Q Consensus 93 ~~~I~~ia~qlg~s~ 107 (286)
++++.+||..||++.
T Consensus 22 ~~~~~ela~~l~vs~ 36 (142)
T 1on2_A 22 YARVSDIAEALAVHP 36 (142)
T ss_dssp SCCHHHHHHHHTSCH
T ss_pred CCCHHHHHHHhCCCH
Confidence 456666666666665
No 495
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=20.42 E-value=1.6e+02 Score=25.38 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHhCCcchHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHHhCCC
Q 023151 77 YNRSFNSLQNSIGFKNELDIRELGIRFGCIRLIPLVQKGLSLFKDRFTAALPASRKTSADFSRPVFTAVAFYLCAKKHKL 156 (286)
Q Consensus 77 y~~~yr~l~~~LgL~~~~~I~~ia~qlg~s~v~~~A~eiL~~~ke~~~~~L~~gk~~~~D~~pp~~AAAAlY~A~~~~k~ 156 (286)
+.++++.+.+.+|...++.| .....+|.|.+- .+-+..++|.++....+.+.
T Consensus 65 v~~a~~~~~~~~g~~~g~~i-------------------------~i~~~IP~g~GL---GsSsa~a~a~l~al~~l~~~ 116 (271)
T 2v8p_A 65 VYKGLREFERITGIEINYSI-------------------------FIQKNIPPGAGL---GGGSSNLAVVLKKVNELLGS 116 (271)
T ss_dssp HHHHHHHHHHHHCCCCCEEE-------------------------EEECCSCTTSSS---CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCeEE-------------------------EEEeCCCCCCCC---chHHHHHHHHHHHHHHhcCC
Q ss_pred CCCHHHHHHHh
Q 023151 157 KVDKLKLIEVC 167 (286)
Q Consensus 157 kvtQ~kla~~s 167 (286)
..+..+|++.+
T Consensus 117 ~l~~~el~~la 127 (271)
T 2v8p_A 117 PLSEEELRELV 127 (271)
T ss_dssp CSCHHHHHHHH
T ss_pred CcCHHHHHHHH
No 496
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=20.31 E-value=1.3e+02 Score=24.19 Aligned_cols=40 Identities=3% Similarity=-0.042 Sum_probs=30.9
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCC-cHHHHHHHhCCcc
Q 023151 62 DRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNEL-DIRELGIRFGCIR 107 (286)
Q Consensus 62 d~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~~-~I~~ia~qlg~s~ 107 (286)
+..++++..|+++..+.+-.+ |...+. .+.+||..||++.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~------g~~~p~~~l~~ia~~~~v~~ 62 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYT------RGAISYDFAAHCALETGANL 62 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHH------SSSCCHHHHHHHHHHHCCCH
T ss_pred CHHHHHHHhCcCHHHHHHHHh------CCCCCHHHHHHHHHHHCCCH
Confidence 999999999999887766544 443333 5889999999985
No 497
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=20.31 E-value=76 Score=24.67 Aligned_cols=34 Identities=9% Similarity=0.037 Sum_probs=29.2
Q ss_pred CCCHHHHHHHh--CCCHHHHHHHHHHHHHhhhhhhhccccc
Q 023151 157 KVDKLKLIEVC--GTSETEFASVSTTMKDLCHDVFGIAKEK 195 (286)
Q Consensus 157 kvtQ~kla~~s--gvt~vt~rnr~ke~~~~c~d~~~i~~~~ 195 (286)
..|-.+||+.. |+|+.+++++++.|++ .|+-...
T Consensus 27 ~~s~~eLA~~l~~giS~~aVs~rL~~Le~-----~GLV~~~ 62 (111)
T 3b73_A 27 NGSPKELEDRDEIRISKSSVSRRLKKLAD-----HDLLQPL 62 (111)
T ss_dssp CBCHHHHHTSTTCCSCHHHHHHHHHHHHH-----TTSEEEC
T ss_pred CCCHHHHHHHHhcCCCHHHHHHHHHHHHH-----CCCEEec
Confidence 67888999999 9999999999999988 6665543
No 498
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=20.21 E-value=2e+02 Score=26.64 Aligned_cols=55 Identities=5% Similarity=0.093 Sum_probs=38.5
Q ss_pred CCCChhHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhhhhhhcccccC
Q 023151 135 ADFSRPVFTAVAFYLCAKKHKLKVDKLKLIEVCGTSETEFASVSTTMKDLCHDVFGIAKEKK 196 (286)
Q Consensus 135 ~D~~pp~~AAAAlY~A~~~~k~kvtQ~kla~~sgvt~vt~rnr~ke~~~~c~d~~~i~~~~~ 196 (286)
.++++++|..-. .-....+..+++.+|++..++++.|+..+.+.|++ -|.-....
T Consensus 400 ~~lt~~q~~vl~--~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~-----~g~v~r~~ 454 (487)
T 1hsj_A 400 FNLNYEEIYILN--HILRSESNEISSKEIAKCSEFKPYYLTKALQKLKD-----LKLLSKKR 454 (487)
T ss_dssp CCCCHHHHHHHH--HHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHT-----TTTSCCEE
T ss_pred cCCCHHHHHHHH--HHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH-----CCCEeecC
Confidence 345777764322 22222226799999999999999999999999976 55555443
No 499
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=20.19 E-value=1.3e+02 Score=22.43 Aligned_cols=41 Identities=10% Similarity=0.184 Sum_probs=29.7
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC--CcHHHHHHHhCCcc
Q 023151 61 FDRKTAIKLSGMSEKAYNRSFNSLQNSIGFKNE--LDIRELGIRFGCIR 107 (286)
Q Consensus 61 rd~~e~~k~sg~~~k~y~~~yr~l~~~LgL~~~--~~I~~ia~qlg~s~ 107 (286)
++..++++..|++...|.+- ++ |-..+ -.+.+||..|||+.
T Consensus 35 ltq~elA~~~gis~~~is~~----E~--G~~~p~~~~l~~ia~~l~v~~ 77 (114)
T 3vk0_A 35 WSQEELARQCGLDRTYVSAV----ER--KRWNIALSNIEKMAAALGVAA 77 (114)
T ss_dssp CCHHHHHHHHTCCHHHHHHH----TT--TCCCCCHHHHHHHHHHHTSCH
T ss_pred CCHHHHHHHHCcCHHHHHHH----Hc--CCCCCCHHHHHHHHHHhCCCH
Confidence 68899999999998766443 22 33222 25899999999986
No 500
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=20.08 E-value=1e+02 Score=24.17 Aligned_cols=29 Identities=7% Similarity=-0.057 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Q 023151 155 KLKVDKLKLIEVCGTSETEFASVSTTMKD 183 (286)
Q Consensus 155 k~kvtQ~kla~~sgvt~vt~rnr~ke~~~ 183 (286)
-...+..+||+..|+++.|++++..--..
T Consensus 107 ~~g~s~~EIA~~lgis~~tV~~~l~rar~ 135 (157)
T 2lfw_A 107 MEGFSPEDAAYLIEVDTSEVETLVTEALA 135 (157)
T ss_dssp SSCCCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34678999999999999999999877654
Done!