Query 023152
Match_columns 286
No_of_seqs 151 out of 1692
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 17:13:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 86.2 0.58 2E-05 29.7 2.8 31 119-149 14-44 (56)
2 1z2q_A LM5-1; membrane protein 84.9 1.1 3.7E-05 31.2 4.1 26 123-148 20-47 (84)
3 1x4u_A Zinc finger, FYVE domai 81.1 0.76 2.6E-05 31.9 2.1 24 124-147 14-39 (84)
4 3j21_g 50S ribosomal protein L 80.2 0.85 2.9E-05 28.6 1.8 29 121-149 11-39 (51)
5 1wfk_A Zinc finger, FYVE domai 80.1 0.86 2.9E-05 32.0 2.1 26 122-147 7-34 (88)
6 2yw8_A RUN and FYVE domain-con 78.8 0.94 3.2E-05 31.3 1.9 26 123-148 18-45 (82)
7 1joc_A EEA1, early endosomal a 75.5 1.1 3.9E-05 33.6 1.7 25 124-148 69-95 (125)
8 1vfy_A Phosphatidylinositol-3- 74.1 1.2 4E-05 30.1 1.3 24 125-148 12-37 (73)
9 1dvp_A HRS, hepatocyte growth 70.3 1.7 5.7E-05 35.9 1.7 26 124-149 161-188 (220)
10 2dkt_A Ring finger and CHY zin 70.3 1.5 5.1E-05 33.7 1.2 46 118-163 77-126 (143)
11 1y02_A CARP2, FYVE-ring finger 68.7 1.4 4.7E-05 32.9 0.7 23 125-147 20-44 (120)
12 3t7l_A Zinc finger FYVE domain 68.6 2.1 7.3E-05 30.0 1.7 26 123-148 19-46 (90)
13 3zyq_A Hepatocyte growth facto 64.9 4.8 0.00016 33.3 3.4 24 125-148 165-190 (226)
14 2c6a_A Ubiquitin-protein ligas 47.9 6.1 0.00021 23.9 0.9 24 123-146 12-35 (46)
15 2cr8_A MDM4 protein; ZF-ranbp 47.1 14 0.00049 22.8 2.5 23 124-146 11-33 (53)
16 3u5e_m 60S ribosomal protein L 42.4 8.7 0.0003 28.5 1.2 25 123-147 92-118 (128)
17 3j20_Y 30S ribosomal protein S 40.1 8.7 0.0003 23.7 0.7 24 122-145 17-44 (50)
18 2vrw_B P95VAV, VAV1, proto-onc 40.0 11 0.00037 33.8 1.7 28 122-149 355-385 (406)
19 3mpx_A FYVE, rhogef and PH dom 37.8 6.9 0.00023 35.4 0.0 25 123-147 374-400 (434)
20 1wil_A KIAA1045 protein; ring 37.2 25 0.00085 24.3 2.7 26 123-148 14-39 (89)
21 2dkt_A Ring finger and CHY zin 34.8 7.9 0.00027 29.6 -0.1 31 126-156 103-136 (143)
22 2jrp_A Putative cytoplasmic pr 30.3 14 0.00049 25.3 0.6 22 124-146 18-39 (81)
23 1wfl_A Zinc finger protein 216 28.5 51 0.0018 22.1 3.1 36 124-160 25-65 (74)
24 2xzm_5 Ribosomal protein S26E 27.3 16 0.00053 26.9 0.4 20 137-156 19-38 (119)
25 2zjr_Z 50S ribosomal protein L 26.9 27 0.00093 22.4 1.5 22 122-145 28-50 (60)
26 3u5c_a 40S ribosomal protein S 26.6 16 0.00053 26.9 0.3 20 137-156 19-38 (119)
27 1twf_L ABC10-alpha, DNA-direct 25.6 46 0.0016 22.0 2.5 28 122-149 26-56 (70)
28 3arc_T Photosystem II reaction 25.5 92 0.0031 17.2 4.1 15 70-84 17-31 (32)
29 3p8b_A DNA-directed RNA polyme 25.2 23 0.00078 24.2 0.9 26 119-146 18-43 (81)
30 2elu_A Zinc finger protein 406 23.3 17 0.0006 20.1 0.0 8 139-146 10-17 (37)
31 1wa7_B TIP, hypothetical 28.7 22.2 92 0.0031 16.0 2.7 13 78-90 2-14 (26)
32 3qt1_I DNA-directed RNA polyme 21.0 44 0.0015 25.1 1.9 27 120-146 20-54 (133)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=86.17 E-value=0.58 Score=29.75 Aligned_cols=31 Identities=23% Similarity=0.465 Sum_probs=25.5
Q ss_pred CCCCCeeccccccCCCCCCCccCcccCcccc
Q 023152 119 GPSRSVGFCDRCQNGKPPRCHHCSVCQRCVL 149 (286)
Q Consensus 119 ~~~~~~~~C~~C~~~kP~R~hHC~~C~~CV~ 149 (286)
........|.+|...-|+|+..|+.||.--+
T Consensus 14 k~~~~k~ICrkC~ARnp~~A~~CRKCg~~~L 44 (56)
T 2ayj_A 14 QRVFLKKVCRKCGALNPIRATKCRRCHSTNL 44 (56)
T ss_dssp TCSCCCEEETTTCCEECTTCSSCTTTCCCCE
T ss_pred HHHhchhhhccccCcCCcccccccCCCCCCC
Confidence 3455678999999999999999999886543
No 2
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=84.85 E-value=1.1 Score=31.17 Aligned_cols=26 Identities=27% Similarity=0.607 Sum_probs=18.8
Q ss_pred CeeccccccCC--CCCCCccCcccCccc
Q 023152 123 SVGFCDRCQNG--KPPRCHHCSVCQRCV 148 (286)
Q Consensus 123 ~~~~C~~C~~~--kP~R~hHC~~C~~CV 148 (286)
+...|..|+.. --.|-|||+.||+-+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEE
Confidence 45678888843 346889999998743
No 3
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.06 E-value=0.76 Score=31.94 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=17.5
Q ss_pred eeccccccCC--CCCCCccCcccCcc
Q 023152 124 VGFCDRCQNG--KPPRCHHCSVCQRC 147 (286)
Q Consensus 124 ~~~C~~C~~~--kP~R~hHC~~C~~C 147 (286)
...|..|+.. --.|-|||+.||+-
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcE
Confidence 4567777743 44688999999874
No 4
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=80.18 E-value=0.85 Score=28.56 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=24.4
Q ss_pred CCCeeccccccCCCCCCCccCcccCcccc
Q 023152 121 SRSVGFCDRCQNGKPPRCHHCSVCQRCVL 149 (286)
Q Consensus 121 ~~~~~~C~~C~~~kP~R~hHC~~C~~CV~ 149 (286)
......|.+|...-|+++..|+.||.--+
T Consensus 11 ~~~k~iCpkC~a~~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 11 IFKKYVCLRCGATNPWGAKKCRKCGYKRL 39 (51)
T ss_dssp SSSEEECTTTCCEECTTCSSCSSSSSCCC
T ss_pred HhCCccCCCCCCcCCCCceecCCCCCccc
Confidence 34578999999999999999999987543
No 5
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=80.06 E-value=0.86 Score=32.03 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=18.9
Q ss_pred CCeeccccccCC--CCCCCccCcccCcc
Q 023152 122 RSVGFCDRCQNG--KPPRCHHCSVCQRC 147 (286)
Q Consensus 122 ~~~~~C~~C~~~--kP~R~hHC~~C~~C 147 (286)
.+...|..|+.. --.|-|||+.||+-
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCE
Confidence 345678888843 34688999999874
No 6
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=78.78 E-value=0.94 Score=31.30 Aligned_cols=26 Identities=27% Similarity=0.712 Sum_probs=18.6
Q ss_pred CeeccccccCC--CCCCCccCcccCccc
Q 023152 123 SVGFCDRCQNG--KPPRCHHCSVCQRCV 148 (286)
Q Consensus 123 ~~~~C~~C~~~--kP~R~hHC~~C~~CV 148 (286)
+...|..|+.. --.|-|||+.||+-+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEE
Confidence 34568888743 346889999998754
No 7
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=75.51 E-value=1.1 Score=33.59 Aligned_cols=25 Identities=36% Similarity=0.744 Sum_probs=18.0
Q ss_pred eeccccccCC--CCCCCccCcccCccc
Q 023152 124 VGFCDRCQNG--KPPRCHHCSVCQRCV 148 (286)
Q Consensus 124 ~~~C~~C~~~--kP~R~hHC~~C~~CV 148 (286)
...|..|... --.|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 4567777743 346889999998743
No 8
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=74.14 E-value=1.2 Score=30.08 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=17.3
Q ss_pred eccccccCC--CCCCCccCcccCccc
Q 023152 125 GFCDRCQNG--KPPRCHHCSVCQRCV 148 (286)
Q Consensus 125 ~~C~~C~~~--kP~R~hHC~~C~~CV 148 (286)
..|..|+.. --.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 368888743 345889999998743
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=70.33 E-value=1.7 Score=35.93 Aligned_cols=26 Identities=31% Similarity=0.666 Sum_probs=19.2
Q ss_pred eeccccccCC--CCCCCccCcccCcccc
Q 023152 124 VGFCDRCQNG--KPPRCHHCSVCQRCVL 149 (286)
Q Consensus 124 ~~~C~~C~~~--kP~R~hHC~~C~~CV~ 149 (286)
...|..|+.. --.|-|||+.||+-+-
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C 188 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFC 188 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEC
Confidence 3689999843 3468999999987543
No 10
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=70.30 E-value=1.5 Score=33.72 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=32.3
Q ss_pred CCCCCCeeccccccCCCCC-CCccCcccCccccC---ccccccccccccc
Q 023152 118 RGPSRSVGFCDRCQNGKPP-RCHHCSVCQRCVLK---MDHHCVWVVNCVG 163 (286)
Q Consensus 118 ~~~~~~~~~C~~C~~~kP~-R~hHC~~C~~CV~~---~DHHCpwi~nCIG 163 (286)
++......||.+|+.|.++ ...||..||-|... -=-||.-=|.|+.
T Consensus 77 Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 77 CSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 4566677899999999554 35888888888775 2245666666643
No 11
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=68.68 E-value=1.4 Score=32.94 Aligned_cols=23 Identities=22% Similarity=0.589 Sum_probs=17.1
Q ss_pred eccccccCC--CCCCCccCcccCcc
Q 023152 125 GFCDRCQNG--KPPRCHHCSVCQRC 147 (286)
Q Consensus 125 ~~C~~C~~~--kP~R~hHC~~C~~C 147 (286)
..|..|+.. --.|-|||+.||+-
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 467778742 34688999999884
No 12
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=68.62 E-value=2.1 Score=30.04 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=18.0
Q ss_pred CeeccccccCC--CCCCCccCcccCccc
Q 023152 123 SVGFCDRCQNG--KPPRCHHCSVCQRCV 148 (286)
Q Consensus 123 ~~~~C~~C~~~--kP~R~hHC~~C~~CV 148 (286)
+...|..|+.. --.|-|||+.||+-+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEE
Confidence 34568888742 345889999998743
No 13
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=64.87 E-value=4.8 Score=33.35 Aligned_cols=24 Identities=33% Similarity=0.750 Sum_probs=17.7
Q ss_pred eccccccCC--CCCCCccCcccCccc
Q 023152 125 GFCDRCQNG--KPPRCHHCSVCQRCV 148 (286)
Q Consensus 125 ~~C~~C~~~--kP~R~hHC~~C~~CV 148 (286)
..|..|+.. ---|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 479889832 334789999998854
No 14
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=47.88 E-value=6.1 Score=23.92 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=18.2
Q ss_pred CeeccccccCCCCCCCccCcccCc
Q 023152 123 SVGFCDRCQNGKPPRCHHCSVCQR 146 (286)
Q Consensus 123 ~~~~C~~C~~~kP~R~hHC~~C~~ 146 (286)
..-.|.+|+..-||-..||..|-.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCC
T ss_pred ceEecccccccCCCccchhhHHHh
Confidence 345689999888888888877643
No 15
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=47.10 E-value=14 Score=22.78 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=16.2
Q ss_pred eeccccccCCCCCCCccCcccCc
Q 023152 124 VGFCDRCQNGKPPRCHHCSVCQR 146 (286)
Q Consensus 124 ~~~C~~C~~~kP~R~hHC~~C~~ 146 (286)
.-.|.+|+..-||-..||..|-.
T Consensus 11 ~WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 11 EWQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp CEECSSSCCEECSSCCBCTTTCC
T ss_pred eeecccccccCCCccchhHHHHH
Confidence 45688888777777777776643
No 16
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=42.35 E-value=8.7 Score=28.55 Aligned_cols=25 Identities=28% Similarity=0.814 Sum_probs=21.5
Q ss_pred CeeccccccCCCCCCCccCc--ccCcc
Q 023152 123 SVGFCDRCQNGKPPRCHHCS--VCQRC 147 (286)
Q Consensus 123 ~~~~C~~C~~~kP~R~hHC~--~C~~C 147 (286)
....|.+|...-|+|+..|+ .||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 45789999999999999999 48753
No 17
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.10 E-value=8.7 Score=23.73 Aligned_cols=24 Identities=33% Similarity=0.751 Sum_probs=14.3
Q ss_pred CCeeccccccCC---CC-CCCccCcccC
Q 023152 122 RSVGFCDRCQNG---KP-PRCHHCSVCQ 145 (286)
Q Consensus 122 ~~~~~C~~C~~~---kP-~R~hHC~~C~ 145 (286)
...++|++|..- .+ ...++|..|+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred EecccCCCCCCceEEecCCCeEECCCCC
Confidence 356889999751 11 1235677665
No 18
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=39.99 E-value=11 Score=33.83 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=20.6
Q ss_pred CCeeccccccCC---CCCCCccCcccCcccc
Q 023152 122 RSVGFCDRCQNG---KPPRCHHCSVCQRCVL 149 (286)
Q Consensus 122 ~~~~~C~~C~~~---kP~R~hHC~~C~~CV~ 149 (286)
..+.+|..|+.. --.|-|||+.||..+-
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h 385 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAH 385 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEEC
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccc
Confidence 467899999954 3468899998875443
No 19
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=37.80 E-value=6.9 Score=35.39 Aligned_cols=25 Identities=32% Similarity=0.701 Sum_probs=0.0
Q ss_pred CeeccccccCC--CCCCCccCcccCcc
Q 023152 123 SVGFCDRCQNG--KPPRCHHCSVCQRC 147 (286)
Q Consensus 123 ~~~~C~~C~~~--kP~R~hHC~~C~~C 147 (286)
....|..|+.. --.|-|||+.||+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp ---------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCE
Confidence 34568888843 33478999999984
No 20
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=37.24 E-value=25 Score=24.28 Aligned_cols=26 Identities=27% Similarity=0.616 Sum_probs=22.2
Q ss_pred CeeccccccCCCCCCCccCcccCccc
Q 023152 123 SVGFCDRCQNGKPPRCHHCSVCQRCV 148 (286)
Q Consensus 123 ~~~~C~~C~~~kP~R~hHC~~C~~CV 148 (286)
....|..|..|-..--.-||+|+|+.
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rvf 39 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVF 39 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCC
T ss_pred CCcccCccccccccceeccccccccc
Confidence 45689999999988888999999974
No 21
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=34.82 E-value=7.9 Score=29.64 Aligned_cols=31 Identities=29% Similarity=0.794 Sum_probs=22.0
Q ss_pred ccccccCCCCCCCccCcccCcccc--Cc-ccccc
Q 023152 126 FCDRCQNGKPPRCHHCSVCQRCVL--KM-DHHCV 156 (286)
Q Consensus 126 ~C~~C~~~kP~R~hHC~~C~~CV~--~~-DHHCp 156 (286)
.|..|+.-+.+--.||..||.|+. .. +|.|.
T Consensus 103 ~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 103 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp TTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 355555666778899999999954 33 47774
No 22
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=30.25 E-value=14 Score=25.27 Aligned_cols=22 Identities=18% Similarity=0.682 Sum_probs=11.0
Q ss_pred eeccccccCCCCCCCccCcccCc
Q 023152 124 VGFCDRCQNGKPPRCHHCSVCQR 146 (286)
Q Consensus 124 ~~~C~~C~~~kP~R~hHC~~C~~ 146 (286)
...|..|+.--++.+ .|..|+.
T Consensus 18 ~~~C~~C~~~~~~~a-fCPeCgq 39 (81)
T 2jrp_A 18 TAHCETCAKDFSLQA-LCPDCRQ 39 (81)
T ss_dssp EEECTTTCCEEEEEE-ECSSSCS
T ss_pred ceECccccccCCCcc-cCcchhh
Confidence 334555555544444 5555543
No 23
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=28.50 E-value=51 Score=22.05 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=20.7
Q ss_pred eeccccccCCCCCCCccCcccCc-----cccCcccccccccc
Q 023152 124 VGFCDRCQNGKPPRCHHCSVCQR-----CVLKMDHHCVWVVN 160 (286)
Q Consensus 124 ~~~C~~C~~~kP~R~hHC~~C~~-----CV~~~DHHCpwi~n 160 (286)
...|..|+..--.=...|+ |+. -.+-=||.|++--.
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk 65 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYK 65 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGG
T ss_pred CCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhh
Confidence 4578888854222136777 653 33334888886543
No 24
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=27.33 E-value=16 Score=26.89 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=15.3
Q ss_pred CCccCcccCccccCcccccc
Q 023152 137 RCHHCSVCQRCVLKMDHHCV 156 (286)
Q Consensus 137 R~hHC~~C~~CV~~~DHHCp 156 (286)
+.-||..|++||.+----+.
T Consensus 19 ~~V~C~nCgr~vPKDKAIKr 38 (119)
T 2xzm_5 19 RTVPCTNCGRQVAKDKAVKR 38 (119)
T ss_dssp CEEECTTTCCEEETTTSEEC
T ss_pred ccEeeCCccccCcccceeEE
Confidence 44579999999998665554
No 25
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=26.95 E-value=27 Score=22.36 Aligned_cols=22 Identities=32% Similarity=0.824 Sum_probs=15.5
Q ss_pred CCeeccccccCCCCCCCcc-CcccC
Q 023152 122 RSVGFCDRCQNGKPPRCHH-CSVCQ 145 (286)
Q Consensus 122 ~~~~~C~~C~~~kP~R~hH-C~~C~ 145 (286)
.....|..|...+ +.|| |..||
T Consensus 28 p~l~~c~~cG~~~--~pH~vc~~CG 50 (60)
T 2zjr_Z 28 PNLTECPQCHGKK--LSHHICPNCG 50 (60)
T ss_dssp CCCEECTTTCCEE--CTTBCCTTTC
T ss_pred CCceECCCCCCEe--CCceEcCCCC
Confidence 4567889998774 5565 77776
No 26
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=26.64 E-value=16 Score=26.91 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=14.8
Q ss_pred CCccCcccCccccCcccccc
Q 023152 137 RCHHCSVCQRCVLKMDHHCV 156 (286)
Q Consensus 137 R~hHC~~C~~CV~~~DHHCp 156 (286)
+.-||..|++||.+----+.
T Consensus 19 ~~V~C~nCgr~vPKDKAIKr 38 (119)
T 3u5c_a 19 KPVRCVNCSKSIPKDKAIKR 38 (119)
T ss_dssp CEEECTTTCCEEEGGGSCEE
T ss_pred ccEeeccccccccccceeeE
Confidence 34579999999998655443
No 27
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=25.55 E-value=46 Score=22.01 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=18.9
Q ss_pred CCeeccccccCC---CCCCCccCcccCcccc
Q 023152 122 RSVGFCDRCQNG---KPPRCHHCSVCQRCVL 149 (286)
Q Consensus 122 ~~~~~C~~C~~~---kP~R~hHC~~C~~CV~ 149 (286)
...-.|.+|... ++.-+-||+.||.=|+
T Consensus 26 ~v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 26 TLKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred eEEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 344568888854 5555678888887444
No 28
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=25.53 E-value=92 Score=17.16 Aligned_cols=15 Identities=13% Similarity=0.516 Sum_probs=11.1
Q ss_pred HHHHHhhcCCCCCCC
Q 023152 70 SYVMVVFWDPGSVPE 84 (286)
Q Consensus 70 ~y~~~~~~dPG~vp~ 84 (286)
.++...++||=.+++
T Consensus 17 iFFAI~FRePPri~~ 31 (32)
T 3arc_T 17 FFFAIFFREPPRITK 31 (32)
T ss_dssp HHHHHHTSCCCCCC-
T ss_pred HHHhhhhcCCCCCCC
Confidence 367788999987764
No 29
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=25.23 E-value=23 Score=24.22 Aligned_cols=26 Identities=27% Similarity=0.597 Sum_probs=16.4
Q ss_pred CCCCCeeccccccCCCCCCCccCcccCc
Q 023152 119 GPSRSVGFCDRCQNGKPPRCHHCSVCQR 146 (286)
Q Consensus 119 ~~~~~~~~C~~C~~~kP~R~hHC~~C~~ 146 (286)
+.....+-|..|+..+++. -|..|+.
T Consensus 18 ~~~m~~rAC~~C~~v~~~d--~CPnCgs 43 (81)
T 3p8b_A 18 GSHMSEKACRHCHYITSED--RCPVCGS 43 (81)
T ss_dssp ----CCEEETTTCBEESSS--SCTTTCC
T ss_pred CcchhHHHHhhCCCccCCC--CCCCCCC
Confidence 4445567899999988776 3666654
No 30
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=23.26 E-value=17 Score=20.06 Aligned_cols=8 Identities=38% Similarity=1.427 Sum_probs=5.9
Q ss_pred ccCcccCc
Q 023152 139 HHCSVCQR 146 (286)
Q Consensus 139 hHC~~C~~ 146 (286)
.||+.|++
T Consensus 10 qhcrfckk 17 (37)
T 2elu_A 10 QHCRFCKK 17 (37)
T ss_dssp CEETTTTE
T ss_pred HHHHHHHH
Confidence 47888875
No 31
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=22.20 E-value=92 Score=15.98 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCCC
Q 023152 78 DPGSVPENWRSVS 90 (286)
Q Consensus 78 dPG~vp~~~~~~~ 90 (286)
|||..|....+..
T Consensus 2 ~PG~P~P~LPpRP 14 (26)
T 1wa7_B 2 DPGMPTPPLPPRP 14 (26)
T ss_dssp CCCCCCCCCCCCT
T ss_pred CCCCCCCCCCCCc
Confidence 7898876554433
No 32
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=20.99 E-value=44 Score=25.06 Aligned_cols=27 Identities=26% Similarity=0.658 Sum_probs=17.6
Q ss_pred CCCCeeccccccCCC-CCC-------CccCcccCc
Q 023152 120 PSRSVGFCDRCQNGK-PPR-------CHHCSVCQR 146 (286)
Q Consensus 120 ~~~~~~~C~~C~~~k-P~R-------~hHC~~C~~ 146 (286)
+....++|++|+..- |.. -.-|+.|+.
T Consensus 20 ~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY 54 (133)
T 3qt1_I 20 HMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSY 54 (133)
T ss_dssp --CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCC
T ss_pred cccCCeeCCCCCCEeeECccCCCceeEEECCCCCC
Confidence 345689999999663 332 266888776
Done!