BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023154
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OKF|A Chain A, 2.5 Angstrom Resolution Crystal Structure Of
3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae
pdb|3OKF|B Chain B, 2.5 Angstrom Resolution Crystal Structure Of
3-Dehydroquinate Synthase (Arob) From Vibrio Cholerae
Length = 390
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/248 (55%), Positives = 167/248 (67%)
Query: 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDS 60
++T V +E R +ALGGGVIGD+ G+AAA Y RGV FIQIPTT+++QVDS
Sbjct: 106 LETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRGVDFIQIPTTLLSQVDS 165
Query: 61 SVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFF 120
SVGGKT +NH LGKN+IGAFYQP+ V++DTD L TLP RE A+G+AEVIKYG+I D+ FF
Sbjct: 166 SVGGKTAVNHPLGKNMIGAFYQPKAVVIDTDCLTTLPAREFAAGMAEVIKYGIIYDSAFF 225
Query: 121 EWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGF 180
+W E M L A D +A YAI R C+ KAEVV+ DEKESG+RA LNLGHTFGHAIE
Sbjct: 226 DWLEAQMEALYALDEQALTYAIARCCQIKAEVVAQDEKESGIRALLNLGHTFGHAIEAHM 285
Query: 181 GYGQWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 240
GYG WLHGE + G ID S +R+ IL++A LP P+ MT F
Sbjct: 286 GYGNWLHGEAVSAGTVMAAKTAQLQGLIDASQFERILAILKKAHLPVRTPENMTFADFMQ 345
Query: 241 IMAVDKKV 248
M DKKV
Sbjct: 346 HMMRDKKV 353
>pdb|3CLH|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs)from
Helicobacter Pylori
pdb|3CLH|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs)from
Helicobacter Pylori
Length = 343
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 134/224 (59%), Gaps = 8/224 (3%)
Query: 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSV 62
+L ++ + A E +L+R +ALGGGVI DM G+A++ Y RG+ FI IPTT++AQVD+SV
Sbjct: 70 SLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYFRGIDFINIPTTLLAQVDASV 129
Query: 63 GGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEW 122
GGKTGIN GKNLIG+F+QP+ V +D L TL RE +G+AE+IK + D E
Sbjct: 130 GGKTGINTPYGKNLIGSFHQPKAVYMDLAFLKTLEKREFQAGVAEIIKMAVCFDKNLVE- 188
Query: 123 QEQNMHKLMARDPR-AFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFG 181
+L +D + I +S KA+VV DEKE +RA LN GHTFGHAIE
Sbjct: 189 ------RLETKDLKDCLEEVIFQSVNIKAQVVVQDEKEQNIRAGLNYGHTFGHAIEKETD 242
Query: 182 YGQWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQAKL 225
Y ++LHGE + LG + +R+ N+L++ L
Sbjct: 243 YERFLHGEAIAIGMRMANDLALSLGMLTLKEYERIENLLKKFDL 286
>pdb|3QBD|A Chain A, 3-Dehydroquinate Synthase (Arob) From Mycobacterium
Tuberculosis In Complex With Nad
pdb|3QBD|B Chain B, 3-Dehydroquinate Synthase (Arob) From Mycobacterium
Tuberculosis In Complex With Nad
pdb|3QBE|A Chain A, Crystal Structure Of The 3-Dehydroquinate Synthase (Arob)
From Mycobacterium Tuberculosis
Length = 368
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/233 (43%), Positives = 132/233 (56%), Gaps = 4/233 (1%)
Query: 16 LDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKN 75
+ R+ V+LGGG D+ G+AAA++LRGVS + +PTT++ VD++VGGKTGIN GKN
Sbjct: 101 IGRKDALVSLGGGAATDVAGFAAATWLRGVSIVHLPTTLLGMVDAAVGGKTGINTDAGKN 160
Query: 76 LIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP 135
L+GAF+QP VLVD TL TLP E+ G+AEV+K G I D + E + +
Sbjct: 161 LVGAFHQPLAVLVDLATLQTLPRDEMICGMAEVVKAGFIADPVILDLIEADPQAALDPAG 220
Query: 136 RAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEXXXXXX 195
I+R+ KAEVV+ DEKES LR LN GHT GHAIE Y +W HG
Sbjct: 221 DVLPELIRRAITVKAEVVAADEKESELREILNYGHTLGHAIERRERY-RWRHGAAVSVGL 279
Query: 196 XXXXXXSYRLGWIDDSIVKRVHNILQQAKLPTA-PPDTMTVEMFKSIMAVDKK 247
+ G +DD+ +R IL LP + PD + IMA DKK
Sbjct: 280 VFAAELARLAGRLDDATAQRHRTILSSLGLPVSYDPDAL--PQLLEIMAGDKK 330
>pdb|1DQS|A Chain A, Crystal Structure Of Dehydroquinate Synthase (Dhqs)
Complexed With Carbaphosphonate, Nad+ And Zn2+
pdb|1DQS|B Chain B, Crystal Structure Of Dehydroquinate Synthase (Dhqs)
Complexed With Carbaphosphonate, Nad+ And Zn2+
pdb|1NR5|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+, Nad And Carbaphosphonate
pdb|1NR5|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+, Nad And Carbaphosphonate
pdb|1NRX|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NRX|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NUA|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+
pdb|1NUA|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+
pdb|1NVA|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Adp
pdb|1NVA|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Adp
pdb|1NVB|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVB|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVD|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVD|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Carbaphosphonate
pdb|1NVE|A Chain A, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVE|B Chain B, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVE|C Chain C, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVE|D Chain D, Crystal Structure Of 3-Dehydroquinate Synthase (Dhqs) In
Complex With Zn2+ And Nad
pdb|1NVF|A Chain A, Crystal Structure Of 3-dehydroquinate Synthase (dhqs) In
Complex With Zn2+, Adp And Carbaphosphonate
pdb|1NVF|B Chain B, Crystal Structure Of 3-dehydroquinate Synthase (dhqs) In
Complex With Zn2+, Adp And Carbaphosphonate
pdb|1NVF|C Chain C, Crystal Structure Of 3-dehydroquinate Synthase (dhqs) In
Complex With Zn2+, Adp And Carbaphosphonate
pdb|1SG6|A Chain A, Crystal Structure Of Aspergillus Nidulans 3-Dehydroquinate
Synthase (Andhqs) In Complex With Zn2+ And Nad+, At 1.7d
pdb|1SG6|B Chain B, Crystal Structure Of Aspergillus Nidulans 3-Dehydroquinate
Synthase (Andhqs) In Complex With Zn2+ And Nad+, At 1.7d
Length = 393
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 133/254 (52%), Gaps = 25/254 (9%)
Query: 18 RRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLI 77
R +ALGGGVIGD+ G+ A++Y+RGV ++Q+PTT++A VDSS+GGKT I+ LGKNLI
Sbjct: 105 RDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLI 164
Query: 78 GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRA 137
GA +QP + +D + L TLP RE +G+AEVIK I E F E+N ++ R
Sbjct: 165 GAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRRE 224
Query: 138 FAYAIKR--------------SCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYG 183
R S +KA VVS DE+E GLR LN GH+ GHAIE
Sbjct: 225 VTPGEHRFEGTEEILKARILASARHKAYVVSADEREGGLRNLLNWGHSIGHAIE-AILTP 283
Query: 184 QWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTM---------- 233
Q LHGE + LG + V R+ L LPT+ D
Sbjct: 284 QILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHC 343
Query: 234 TVEMFKSIMAVDKK 247
+V+ MA+DKK
Sbjct: 344 SVDQLMFNMALDKK 357
>pdb|1XAG|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAH|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAH|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAI|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAI|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAL|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
pdb|1XAL|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
Length = 354
Score = 154 bits (388), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 78/167 (46%), Positives = 105/167 (62%), Gaps = 2/167 (1%)
Query: 12 IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHR 71
+ + R +A+GGG GD G+ AA+ LRGV FIQ+PTT++A DSSVGGK GIN +
Sbjct: 84 LSHHVTRNTAIIAVGGGATGDFAGFVAATLLRGVHFIQVPTTILAH-DSSVGGKVGINSK 142
Query: 72 LGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMH-KL 130
GKNLIGAFY+P V+ D D L TLP +++ SG AEV K+ L+ + EQ+ +
Sbjct: 143 QGKNLIGAFYRPTAVIYDLDFLKTLPFKQILSGYAEVYKHALLNGESATQDIEQHFKDRE 202
Query: 131 MARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIE 177
+ + I + E K ++V DEKE G+R LNLGHTFGHA+E
Sbjct: 203 ILQSLNGMDKYIAKGIETKLDIVVADEKEQGVRKFLNLGHTFGHAVE 249
>pdb|1UJN|A Chain A, Crystal Structure Of Dehydroquinate Synthase From Thermus
Thermophilus Hb8
pdb|1UJN|B Chain B, Crystal Structure Of Dehydroquinate Synthase From Thermus
Thermophilus Hb8
Length = 348
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 99/178 (55%), Gaps = 5/178 (2%)
Query: 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDS 60
++ KV E L R T + +GGG + D+ G+ AA+YLRGV+++ PTT +A VD+
Sbjct: 67 LEVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATYLRGVAYLAFPTTTLAIVDA 126
Query: 61 SVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFF 120
SVGGKTGIN GKNL+GAF+ PQ V + L TLP GL E K+GLI E
Sbjct: 127 SVGGKTGINLPEGKNLVGAFHFPQGVYAELRALKTLPLPTFKEGLVEAFKHGLIAGDEAL 186
Query: 121 EWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRATLNLGHTFGHAIET 178
+ L + PR A+ + R+ K V D E G R LNLGHT GHA+E
Sbjct: 187 ----LKVEDLTPQSPRLEAF-LARAVAVKVRVTEEDPLEKGKRRLLNLGHTLGHALEA 239
>pdb|2D2X|A Chain A, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
pdb|2D2X|B Chain B, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
pdb|2GRU|A Chain A, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
Complexed With Carbaglucose-6-Phosphate, Nad+ And Co2+
pdb|2GRU|B Chain B, Crystal Structure Of 2-Deoxy-Scyllo-Inosose Synthase
Complexed With Carbaglucose-6-Phosphate, Nad+ And Co2+
Length = 368
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 102/191 (53%), Gaps = 5/191 (2%)
Query: 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDS 60
+ T+ + ++AI +RR VA+GGG+ G++ G AA RG++ I +PTT +A DS
Sbjct: 77 LSTVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMMFRGIALIHVPTTFLAASDS 136
Query: 61 SVGGKTGINHRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFF 120
+ K +N GKNL+G +Y P+ V DT L+ P R++ +G+ E++K LI + +
Sbjct: 137 VLSIKQAVNLTSGKNLVGFYYPPRFVFADTRILSESPPRQVKAGMCELVKNMLILENDNK 196
Query: 121 EWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLD--EKESGLRATLNLGHTFGHAIET 178
E+ E +++ P+ I K V+S D EK+ GL GHT GHAIE
Sbjct: 197 EFTEDDLNSANVYSPKQLETFINFCISAKMSVLSEDIYEKKKGL--IFEYGHTIGHAIEL 254
Query: 179 GFGYGQWLHGE 189
G HGE
Sbjct: 255 A-EQGGITHGE 264
>pdb|3CE9|A Chain A, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
pdb|3CE9|B Chain B, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
pdb|3CE9|C Chain C, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
pdb|3CE9|D Chain D, Crystal Structure Of Glycerol Dehydrogenase (Np_348253.1)
From Clostridium Acetobutylicum At 2.37 A Resolution
Length = 354
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 13/128 (10%)
Query: 22 FVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81
+ +GGG D Y A +LR + FI +PT+ SS IN GK
Sbjct: 92 LIGIGGGKAIDAVKYXA--FLRKLPFISVPTSTSNDGFSSPVASLLIN---GKRTSVPAK 146
Query: 82 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQ-EQNMHKLMARDPRAFAY 140
P ++VD D + P++ + SG+ +++ ++W+ E+ HK + D FA
Sbjct: 147 TPDGIVVDIDVIKGSPEKFIYSGIGDLVS----NITALYDWKFEEENHKSIIDD---FAV 199
Query: 141 AIKRSCEN 148
I + N
Sbjct: 200 XISKKSVN 207
>pdb|1TA9|A Chain A, Crystal Structure Of Glycerol Dehydrogenase From
Schizosaccharomyces Pombe
pdb|1TA9|B Chain B, Crystal Structure Of Glycerol Dehydrogenase From
Schizosaccharomyces Pombe
Length = 450
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 15 RLDRRC-----TFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGIN 69
+L ++C + +GGG D Y A S + I PTT A D++ + I
Sbjct: 137 KLRKQCPDDTQVIIGVGGGKTMDSAKYIAHSM--NLPSIICPTT--ASSDAATSSLSVIY 192
Query: 70 HRLGKNLIGAFY--QPQCVLVDTDTLNTLPDRELASGLAEVI 109
G+ +FY P + +DTD + P R L SG+ + +
Sbjct: 193 TPDGQFQKYSFYPLNPNLIFIDTDVIVRAPVRFLISGIGDAL 234
>pdb|1JPU|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Glycerol
Dehydrogenase
pdb|1JQA|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Glycerol
pdb|1JQ5|A Chain A, Bacillus Stearothermophilus Glycerol Dehydrogenase Complex
With Nad+
Length = 370
Score = 30.8 bits (68), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 80 FYQ--PQCVLVDTDTLNTLPDRELASGLAEVI 109
FY+ P VLVDT + P R LASG+A+ +
Sbjct: 144 FYKKNPDLVLVDTKIIANAPPRLLASGIADAL 175
>pdb|1KQ3|A Chain A, Crystal Structure Of A Glycerol Dehydrogenase (Tm0423)
From Thermotoga Maritima At 1.5 A Resolution
Length = 376
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 87/234 (37%), Gaps = 44/234 (18%)
Query: 23 VALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLG--KNLIGAF 80
V +GGG D A +Y + +PT +A D+ + I G K +
Sbjct: 99 VGIGGGKTLDTA--KAVAYKLKKPVVIVPT--IASTDAPCSALSVIYTPNGEFKRYLFLP 154
Query: 81 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQ---EQNMHKLMARDPRA 137
P VLVDT+ + P R L +G+ + + A +FE + ++ + R
Sbjct: 155 RNPDVVLVDTEIVAKAPARFLVAGMGDAL-------ATWFEAESCKQKYAPNMTGRLGSM 207
Query: 138 FAYAI---------------KRSCENKAEVVSLDEKESGLRATLNLGHTFG-----HAIE 177
AYA+ KRS E K+ +L++ LG G HAI
Sbjct: 208 TAYALARLCYETLLEYGVLAKRSVEEKSVTPALEKIVEANTLLSGLGFESGGLAAAHAIH 267
Query: 178 TGF----GYGQWLHGEXXXXXXXXXXXXSYRLGWIDDSIVKRVHNILQQAKLPT 227
G ++LHGE S L +++ V++ ++ LPT
Sbjct: 268 NGLTVLENTHKYLHGE----KVAIGVLASLFLTDKPRKMIEEVYSFCEEVGLPT 317
>pdb|1QI9|A Chain A, X-ray Siras Structure Determination Of A
Vanadium-dependent Haloperoxidase From Ascophyllum
Nodosum At 2.0 A Resolution
pdb|1QI9|B Chain B, X-ray Siras Structure Determination Of A
Vanadium-dependent Haloperoxidase From Ascophyllum
Nodosum At 2.0 A Resolution
Length = 556
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 95 TLPDRELASGLAEVIKYGLIRDAEFFEW 122
TLP ELA+ LAEV L RD F ++
Sbjct: 128 TLPSPELAAQLAEVYWMALARDVPFMQY 155
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 87 LVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSC 146
L + D L DR+ + LA I ++ E P + A+KR C
Sbjct: 186 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIEL------------PDGYMAALKRKC 233
Query: 147 ENKAEVVSLDEKESGLRAT 165
E + ++ LDE ++G+ T
Sbjct: 234 EARGMLLILDEAQTGVGRT 252
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 87 LVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSC 146
L + D L DR+ + LA I ++ E P + A+KR C
Sbjct: 185 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIEL------------PDGYMAALKRKC 232
Query: 147 ENKAEVVSLDEKESGLRAT 165
E + ++ LDE ++G+ T
Sbjct: 233 EARGMLLILDEAQTGVGRT 251
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 87 LVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSC 146
L + D L DR+ + LA I ++ E P + A+KR C
Sbjct: 184 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIEL------------PDGYMAALKRKC 231
Query: 147 ENKAEVVSLDEKESGLRAT 165
E + ++ LDE ++G+ T
Sbjct: 232 EARGMLLILDEAQTGVGRT 250
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 87 LVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSC 146
L + D L DR+ + LA I ++ E P + A+KR C
Sbjct: 186 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIEL------------PDGYMAALKRKC 233
Query: 147 ENKAEVVSLDEKESGLRAT 165
E + ++ LDE ++G+ T
Sbjct: 234 EARGMLLILDEAQTGVGRT 252
>pdb|2A14|A Chain A, Crystal Structure Of Human Indolethylamine N-
Methyltransferase With Sah
Length = 263
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 105 LAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAY--AIKRSCENKAEVVSLDEKESGL 162
LA + I ++F + + + K + ++P A+ + A+K +CE + +EKE L
Sbjct: 72 LAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131
Query: 163 RATLN 167
RA +
Sbjct: 132 RAAVK 136
>pdb|1UPI|A Chain A, Mycobacterium Tuberculosis Rmlc Epimerase (Rv3465)
Length = 225
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 34 CGYAAASYLRGVSFIQIPTTVMAQVDSSVGG--KTGINHRLGKNLIGAFYQPQCVLVDTD 91
C ++A LRG+ F Q+P + V G ++ R G G + VL+D
Sbjct: 70 CSVSSAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRW---DSVLLDDQ 126
Query: 92 TLNTLPDRE-LASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDP 135
T+ E LA G + + E+ Q H + A DP
Sbjct: 127 DRRTIYVSEGLAHGFLALQDNSTVMYLXSAEYNPQREHTIXATDP 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,626,267
Number of Sequences: 62578
Number of extensions: 277991
Number of successful extensions: 595
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 22
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)