Query 023154
Match_columns 286
No_of_seqs 211 out of 1540
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 17:15:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023154.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023154hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3okf_A 3-dehydroquinate syntha 100.0 2.2E-72 7.6E-77 525.8 30.2 282 2-284 107-388 (390)
2 3qbe_A 3-dehydroquinate syntha 100.0 2.9E-71 9.8E-76 515.5 30.9 280 2-284 87-366 (368)
3 3clh_A 3-dehydroquinate syntha 100.0 1.6E-65 5.3E-70 474.9 23.0 274 2-283 69-342 (343)
4 2gru_A 2-deoxy-scyllo-inosose 100.0 3E-65 1E-69 477.1 19.4 278 2-281 78-360 (368)
5 1ujn_A Dehydroquinate synthase 100.0 8.6E-64 2.9E-68 464.0 18.3 268 2-284 68-338 (348)
6 1sg6_A Pentafunctional AROM po 100.0 1.6E-62 5.3E-67 462.5 25.4 278 2-281 87-392 (393)
7 1xah_A Sadhqs, 3-dehydroquinat 100.0 5.1E-62 1.7E-66 453.3 19.6 274 2-284 74-350 (354)
8 3ce9_A Glycerol dehydrogenase; 100.0 9.6E-43 3.3E-47 323.5 11.1 249 2-283 76-347 (354)
9 1jq5_A Glycerol dehydrogenase; 100.0 3.6E-39 1.2E-43 301.2 24.6 253 2-283 73-357 (370)
10 3bfj_A 1,3-propanediol oxidore 100.0 3.3E-39 1.1E-43 303.1 22.6 251 2-283 79-386 (387)
11 1rrm_A Lactaldehyde reductase; 100.0 5.6E-39 1.9E-43 301.4 21.8 252 2-284 75-383 (386)
12 1vlj_A NADH-dependent butanol 100.0 5.1E-37 1.7E-41 290.0 22.5 255 2-284 88-406 (407)
13 1oj7_A Hypothetical oxidoreduc 100.0 4.4E-37 1.5E-41 290.5 20.1 252 2-283 93-407 (408)
14 1kq3_A Glycerol dehydrogenase; 100.0 5.9E-37 2E-41 286.8 20.6 252 2-283 82-365 (376)
15 1o2d_A Alcohol dehydrogenase, 100.0 5E-37 1.7E-41 286.8 18.1 248 2-285 85-370 (371)
16 1ta9_A Glycerol dehydrogenase; 100.0 5.2E-37 1.8E-41 292.8 16.7 253 2-283 133-417 (450)
17 3ox4_A Alcohol dehydrogenase 2 100.0 7.2E-35 2.5E-39 273.2 24.3 250 2-282 75-381 (383)
18 3jzd_A Iron-containing alcohol 100.0 1.2E-34 4.1E-39 269.2 21.0 247 2-284 76-352 (358)
19 3uhj_A Probable glycerol dehyd 100.0 1.6E-34 5.6E-39 270.8 20.6 255 2-282 93-378 (387)
20 3hl0_A Maleylacetate reductase 100.0 3.7E-34 1.3E-38 265.5 22.2 242 2-283 74-346 (353)
21 3iv7_A Alcohol dehydrogenase I 100.0 6.1E-34 2.1E-38 264.9 21.3 245 2-283 75-349 (364)
22 3rf7_A Iron-containing alcohol 100.0 7.7E-32 2.6E-36 251.5 21.9 245 2-282 93-374 (375)
23 3lp6_A Phosphoribosylaminoimid 88.9 0.53 1.8E-05 38.4 4.9 46 2-53 49-94 (174)
24 1pfk_A Phosphofructokinase; tr 88.6 0.52 1.8E-05 42.3 5.2 48 3-56 82-129 (320)
25 1zxx_A 6-phosphofructokinase; 87.3 0.57 2E-05 42.0 4.7 48 3-56 81-128 (319)
26 4a3s_A 6-phosphofructokinase; 86.9 0.6 2.1E-05 41.9 4.6 48 3-56 81-128 (319)
27 3oow_A Phosphoribosylaminoimid 86.6 0.46 1.6E-05 38.4 3.3 43 5-53 50-92 (166)
28 3hno_A Pyrophosphate-dependent 84.7 0.72 2.5E-05 43.0 4.0 64 2-68 91-160 (419)
29 2f48_A Diphosphate--fructose-6 82.9 1.2 4.1E-05 43.0 4.8 51 3-56 154-207 (555)
30 2i2c_A Probable inorganic poly 81.8 1.7 5.9E-05 37.7 5.1 49 3-52 16-69 (272)
31 3o8l_A 6-phosphofructokinase, 80.7 1.6 5.6E-05 43.6 5.0 64 3-69 477-547 (762)
32 3opy_A 6-phosphofructo-1-kinas 78.2 2.4 8.1E-05 43.4 5.3 51 3-56 676-730 (989)
33 1u11_A PURE (N5-carboxyaminoim 77.1 1.6 5.5E-05 35.7 3.1 43 5-53 66-108 (182)
34 2hig_A 6-phospho-1-fructokinas 76.0 2.4 8.2E-05 40.2 4.4 63 4-69 178-246 (487)
35 3trh_A Phosphoribosylaminoimid 75.4 2.3 8E-05 34.4 3.6 45 3-53 49-93 (169)
36 3o8o_A 6-phosphofructokinase s 74.3 3.2 0.00011 41.6 5.1 51 3-56 471-525 (787)
37 3opy_B 6-phosphofructo-1-kinas 72.1 3.8 0.00013 41.9 5.0 51 3-56 650-704 (941)
38 1o4v_A Phosphoribosylaminoimid 70.8 3.4 0.00012 33.8 3.5 45 4-54 57-101 (183)
39 3o8o_B 6-phosphofructokinase s 70.4 2.8 9.6E-05 42.0 3.6 51 3-56 472-526 (766)
40 3ors_A N5-carboxyaminoimidazol 69.9 3.7 0.00013 33.0 3.5 44 4-53 47-90 (163)
41 2ek0_A Stage V sporulation pro 69.4 5.5 0.00019 28.6 4.0 47 4-53 16-66 (90)
42 1xmp_A PURE, phosphoribosylami 68.2 3.5 0.00012 33.3 3.1 43 5-53 56-98 (170)
43 2q5c_A NTRC family transcripti 67.8 6.5 0.00022 32.3 4.8 41 2-53 129-169 (196)
44 2bon_A Lipid kinase; DAG kinas 67.5 7.8 0.00027 34.4 5.7 45 6-53 73-119 (332)
45 3opy_A 6-phosphofructo-1-kinas 65.4 5.9 0.0002 40.6 4.8 63 4-69 293-378 (989)
46 3kuu_A Phosphoribosylaminoimid 65.2 4.7 0.00016 32.7 3.3 43 5-53 57-99 (174)
47 4grd_A N5-CAIR mutase, phospho 65.1 6.6 0.00022 31.8 4.1 44 4-53 56-99 (173)
48 2h31_A Multifunctional protein 64.4 5.2 0.00018 37.2 3.9 46 3-53 308-353 (425)
49 3o8o_B 6-phosphofructokinase s 64.2 7.9 0.00027 38.7 5.4 63 4-69 87-172 (766)
50 3o8l_A 6-phosphofructokinase, 63.5 7.6 0.00026 38.8 5.1 64 3-69 97-183 (762)
51 3rg8_A Phosphoribosylaminoimid 63.4 9.1 0.00031 30.6 4.6 44 4-53 46-90 (159)
52 2pju_A Propionate catabolism o 62.5 8.6 0.00029 32.4 4.6 39 2-51 141-179 (225)
53 1z0s_A Probable inorganic poly 62.1 5.4 0.00018 34.9 3.4 45 4-52 42-99 (278)
54 3hhe_A Ribose-5-phosphate isom 59.2 28 0.00096 29.9 7.3 39 18-56 40-79 (255)
55 4b4k_A N5-carboxyaminoimidazol 56.7 8.9 0.0003 31.3 3.5 42 6-53 68-109 (181)
56 2qv7_A Diacylglycerol kinase D 55.4 12 0.0004 33.2 4.5 35 18-53 80-115 (337)
57 3opy_B 6-phosphofructo-1-kinas 55.3 9.2 0.00032 39.1 4.1 63 4-69 265-350 (941)
58 3ixq_A Ribose-5-phosphate isom 55.1 21 0.00073 30.1 5.8 38 18-55 19-58 (226)
59 3o8o_A 6-phosphofructokinase s 53.5 7.2 0.00025 39.1 3.0 63 4-69 88-173 (787)
60 4gmk_A Ribose-5-phosphate isom 50.9 28 0.00095 29.4 5.8 38 18-55 20-59 (228)
61 2ywx_A Phosphoribosylaminoimid 48.6 12 0.00041 29.8 3.0 42 5-52 41-82 (157)
62 2lqo_A Putative glutaredoxin R 45.2 16 0.00056 25.9 3.1 65 212-284 16-83 (92)
63 3s40_A Diacylglycerol kinase; 45.0 27 0.00092 30.4 5.1 35 18-53 63-98 (304)
64 3l7o_A Ribose-5-phosphate isom 44.0 43 0.0015 28.1 6.0 52 4-56 4-57 (225)
65 2an1_A Putative kinase; struct 39.2 23 0.0008 30.5 3.8 31 19-52 64-95 (292)
66 3pfn_A NAD kinase; structural 35.6 28 0.00097 31.5 3.7 33 17-52 107-140 (365)
67 1u0t_A Inorganic polyphosphate 31.5 33 0.0011 30.0 3.4 32 18-52 75-107 (307)
68 2lnd_A De novo designed protei 30.1 1.4E+02 0.0047 20.9 5.7 48 3-53 39-86 (112)
69 3afo_A NADH kinase POS5; alpha 29.3 33 0.0011 31.4 3.1 31 19-52 115-147 (388)
70 3l3b_A ES1 family protein; ssg 27.0 1.6E+02 0.0056 24.5 7.0 39 16-54 105-161 (242)
71 3lkv_A Uncharacterized conserv 26.5 94 0.0032 26.5 5.5 43 3-53 57-99 (302)
72 1yt5_A Inorganic polyphosphate 25.8 22 0.00077 30.2 1.2 31 18-52 41-72 (258)
73 2pln_A HP1043, response regula 25.5 1.5E+02 0.0051 21.0 5.9 42 3-50 50-92 (137)
74 3hbm_A UDP-sugar hydrolase; PS 23.3 54 0.0019 28.3 3.3 29 18-53 225-253 (282)
75 3khj_A Inosine-5-monophosphate 21.8 1.7E+02 0.0058 26.1 6.4 50 4-61 196-246 (361)
76 4af0_A Inosine-5'-monophosphat 21.5 75 0.0026 30.4 4.0 40 5-49 333-389 (556)
77 2rno_A Putative DNA-binding pr 21.4 92 0.0032 22.7 3.5 58 213-282 22-79 (110)
78 3dzc_A UDP-N-acetylglucosamine 21.3 1.7E+02 0.0058 26.0 6.3 44 3-51 99-142 (396)
79 2q5c_A NTRC family transcripti 21.1 96 0.0033 25.0 4.2 43 5-55 39-81 (196)
No 1
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=100.00 E-value=2.2e-72 Score=525.83 Aligned_cols=282 Identities=54% Similarity=0.862 Sum_probs=269.4
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
+++.++++.+++++++|.|+|||+|||+++|+|||+|++|+||+||++||||+++|+||++|+|++||.+.+||.+|.|+
T Consensus 107 ~~v~~~~~~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rgip~I~IPTTlla~vDssvggkt~I~~~~~Kn~ig~f~ 186 (390)
T 3okf_A 107 ETFNTVMSFLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRGVDFIQIPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFY 186 (390)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHHTSSSCEEEEEETTEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCcCcEEEEECCcHHhhHHHHHHHHhcCCCCEEEeCCCCccccccCcCCeEEEEcCCCceEEeecc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhhh
Q 023154 82 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESG 161 (286)
Q Consensus 82 ~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g 161 (286)
+|.+||+||+++.|+|++++++|++|++||+++.||++|+|++++.+.+.+.+.+.+.+++.++|..|.++|.+|++|.|
T Consensus 187 ~P~~ViiD~~~l~tlP~r~~~aG~~D~lkha~i~D~~~~~~l~~~~~~l~~~~~~~l~~~i~~s~~~K~~vV~~D~~E~g 266 (390)
T 3okf_A 187 QPKAVVIDTDCLTTLPAREFAAGMAEVIKYGIIYDSAFFDWLEAQMEALYALDEQALTYAIARCCQIKAEVVAQDEKESG 266 (390)
T ss_dssp CCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred CCCEEEEcHHHHhhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHHHHHHhcCCchhhc
Confidence 99999999999999999999999999999999999999999999887888888889999999999999999999999999
Q ss_pred hHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHH
Q 023154 162 LRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSI 241 (286)
Q Consensus 162 ~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~~ 241 (286)
+|++||||||||||||..++|..++|||+||+||.++++++.++|++++++.+++.++|+++|+|+++++.+++++++++
T Consensus 267 ~R~~Ln~GHT~gHAiE~~~~~~~~~HGeaVaiGm~~~a~ls~~~g~~~~~~~~ri~~~l~~~glp~~~~~~~~~~~~~~~ 346 (390)
T 3okf_A 267 IRALLNLGHTFGHAIEAHMGYGNWLHGEAVSAGTVMAAKTAQLQGLIDASQFERILAILKKAHLPVRTPENMTFADFMQH 346 (390)
T ss_dssp GGGGGGTTHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCCSCCTTCCHHHHHHH
T ss_pred ccchhccchHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHH
Confidence 99999999999999999877766899999999999999999999999999999999999999999998765789999999
Q ss_pred HHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHHh
Q 023154 242 MAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC 284 (286)
Q Consensus 242 l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~~ 284 (286)
|.+|||+++|+++|+||++ ||++++..+++++++.+++++++
T Consensus 347 m~~DKK~~~g~i~~vL~~~-iG~~~~~~~v~~~~l~~~l~~~~ 388 (390)
T 3okf_A 347 MMRDKKVLAGELRLVLPTS-IGTSAVVKGVPEAVIAQAIEYCR 388 (390)
T ss_dssp HTGGGTCCTTCCEEEEEEE-TTEEEEEECCCHHHHHHHHHHTT
T ss_pred HHhhhcccCCEEEEEEECC-CCcEEEECCCCHHHHHHHHHHhc
Confidence 9999999999999999997 99999988899999999998764
No 2
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=100.00 E-value=2.9e-71 Score=515.46 Aligned_cols=280 Identities=40% Similarity=0.617 Sum_probs=264.1
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
+++.++++.+++++++|.|+|||+|||+++|+|||+|++|+||+||++||||+++|+||++|+|++||.+..||.+|.|+
T Consensus 87 ~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rgip~i~IPTTlla~vDssvggkt~V~~~~~Kn~ig~~~ 166 (368)
T 3qbe_A 87 PVVGFIWEVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGVSIVHLPTTLLGMVDAAVGGKTGINTDAGKNLVGAFH 166 (368)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGGGCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHhccCCcEEEECCCCccccccCcCceEEEECCCCceeecccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhhh
Q 023154 82 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESG 161 (286)
Q Consensus 82 ~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g 161 (286)
+|.+||+||+++.|+|++++++|++|++||+++.||++|+|++++...+++.+.+.+.+++.++|..|+.++++|++|.|
T Consensus 167 ~P~~viiDp~~l~tlP~r~~~sG~ad~ik~~~i~D~~~~~~l~~~~~~~~~~~~~~l~~~i~~s~~~Ka~vV~~D~~e~g 246 (368)
T 3qbe_A 167 QPLAVLVDLATLQTLPRDEMICGMAEVVKAGFIADPVILDLIEADPQAALDPAGDVLPELIRRAITVKAEVVAADEKESE 246 (368)
T ss_dssp CCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHTCHHHHHHHHHCHHHHTCTTSSHHHHHHHHHHHHHHHHHHC----CC
T ss_pred CCCEEEEcHHHHhhCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhCHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence 99999999999999999999999999999999999999999999877776666567889999999999999999999999
Q ss_pred hHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHH
Q 023154 162 LRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSI 241 (286)
Q Consensus 162 ~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~~ 241 (286)
+|++||||||||||||..++| .++|||+||+||.++++++.++|++++++.+++.++|+++|+|+++++ +++++++++
T Consensus 247 ~R~~Ln~GHT~gHAiE~~~~~-~~~HGeaVaiGm~~~~~ls~~~g~~~~~~~~~i~~~l~~~glp~~~~~-~~~~~~~~~ 324 (368)
T 3qbe_A 247 LREILNYGHTLGHAIERRERY-RWRHGAAVSVGLVFAAELARLAGRLDDATAQRHRTILSSLGLPVSYDP-DALPQLLEI 324 (368)
T ss_dssp GGGGGGTTHHHHHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTCCCCCCT-TCHHHHHHH
T ss_pred hhhhhccchHHHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCCC-CCHHHHHHH
Confidence 999999999999999999877 699999999999999999999999999999999999999999999864 789999999
Q ss_pred HHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHHh
Q 023154 242 MAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC 284 (286)
Q Consensus 242 l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~~ 284 (286)
|.+|||+|+|+++|+||++ ||++.+..+++++++++++++++
T Consensus 325 m~~dkK~~~~~~~~vl~~~-iG~~~~~~~~~~~~l~~a~~~~~ 366 (368)
T 3qbe_A 325 MAGDKKTRAGVLRFVVLDG-LAKPGRMVGPDPGLLVTAYAGVC 366 (368)
T ss_dssp HHTSTTCBTTBCEEEEESS-TTCEEEEESCCHHHHHHHHHHHH
T ss_pred HHHhhCccCCEEEEEEECC-CCcEEEECCCCHHHHHHHHHHhh
Confidence 9999999999999999997 99999988999999999999875
No 3
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=100.00 E-value=1.6e-65 Score=474.94 Aligned_cols=274 Identities=41% Similarity=0.648 Sum_probs=226.2
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
+++.++++.+++++++|.|+||||||||++|+|||+|++|+||+|+++||||+++|+|||+|+|++||++..||.+|.|+
T Consensus 69 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~~A~~~~rgip~i~IPTTlla~vDasvg~k~~v~~~~~Kn~ig~~~ 148 (343)
T 3clh_A 69 HSLERILNNAFEMQLNRHSLMIALGGGVISDMVGFASSIYFRGIDFINIPTTLLAQVDASVGGKTGINTPYGKNLIGSFH 148 (343)
T ss_dssp HHHHHHHHHHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHTTSSSCEEEEEETTEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCceEEEECChHHHHHHHHHHHHhccCCCEEEeCCchhhccccccCCeEEEECcccccccccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhhh
Q 023154 82 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESG 161 (286)
Q Consensus 82 ~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g 161 (286)
+|.+||+||+++.|+|++++++|++|++||+++.||+||+|++.+. ++. + +.+++.+++..|..++.+|+.|.|
T Consensus 149 ~P~~vi~D~~~l~tlP~~~~~ag~~d~lkh~~i~d~~~~~~l~~~~---~~~--~-~~~~i~~~~~~k~~vv~~d~~e~g 222 (343)
T 3clh_A 149 QPKAVYMDLAFLKTLEKREFQAGVAEIIKMAVCFDKNLVERLETKD---LKD--C-LEEVIFQSVNIKAQVVVQDEKEQN 222 (343)
T ss_dssp CCSEEEECTTSGGGSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHSC---TTT--S-HHHHHHHHHHHHHHHC--------
T ss_pred CCCEEEEcHHHHhcCCHHHHHhHHHHHHHHHHHcCHHHHHHHHhCc---CCH--H-HHHHHHHHHHHHHHHhccCchhhh
Confidence 9999999999999999999999999999999999999999988652 221 2 678899999999999999999999
Q ss_pred hHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHH
Q 023154 162 LRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSI 241 (286)
Q Consensus 162 ~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~~ 241 (286)
+|+.+|+||+++|+||..++|++++||++||+||++++++++++|..+.+.++++.++++++|+|+++++ ++++++.+.
T Consensus 223 ~r~~ln~gHt~~Hale~~~~~~~~~HGeavAig~~~~~~la~~~g~~~~~~~~~i~~ll~~~glP~~l~~-~~~~~~~~~ 301 (343)
T 3clh_A 223 IRAGLNYGHTFGHAIEKETDYERFLHGEAIAIGMRMANDLALSLGMLTLKEYERIENLLKKFDLIFHYKI-LDLQKFYER 301 (343)
T ss_dssp -CTTTTTTHHHHHHHHHHTTTSSCCHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHTTCCCCCC-----------
T ss_pred HHHHHhhHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCCc-CCHHHHHHH
Confidence 9999999999999999986655799999999999999999999999888899999999999999999986 488999999
Q ss_pred HHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHH
Q 023154 242 MAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 242 l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~ 283 (286)
|.+|||+++|+++|+||++ ||++.+..+++++++.+++++|
T Consensus 302 ~~~dkk~~~~~~~~vl~~~-iG~~~~~~~v~~~~l~~~~~~~ 342 (343)
T 3clh_A 302 LFLDKKSENKTIKFILPKG-VGAFEVASHIPKETIIKVLEKW 342 (343)
T ss_dssp -------------CCEECS-SSCEECCCCCCHHHHHHHSTTC
T ss_pred HHHhhcccCCeEEEEEEcc-cCcEEEECCCCHHHHHHHHHHh
Confidence 9999999999999999997 9999988789999999987643
No 4
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=100.00 E-value=3e-65 Score=477.15 Aligned_cols=278 Identities=29% Similarity=0.441 Sum_probs=259.2
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
+++.++++.+++++++|.|+|||+|||+++|+|||+|++|+||+|+++||||+++|+||++|+|++||.+.+||.+|.|+
T Consensus 78 ~~v~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~rgip~i~IPTTlla~tdS~v~~kt~I~~~~~Kn~ig~~~ 157 (368)
T 2gru_A 78 STVTNLQERAIALGANRRTAIVAVGGGLTGNVAGVAAGMMFRGIALIHVPTTFLAASDSVLSIKQAVNLTSGKNLVGFYY 157 (368)
T ss_dssp HHHHHHHHHHHHTTCCTTEEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECChHHHHHHHHHHHHhcCCCCEEEECCchHhhcCCCcCCeEEEECCCceeEeecCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhhh
Q 023154 82 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKESG 161 (286)
Q Consensus 82 ~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g 161 (286)
+|.+||+||+++.|+|++++++|++|++||++++|+++|+|++.+...+.....+.+.+.+.+++..|.+++..|+.+.|
T Consensus 158 ~P~~viiD~~~l~tlP~~~~~aG~~d~lkha~i~d~~~~~~l~~~~~~l~~~~~~~l~~~i~~~~~~k~~~v~~d~~e~G 237 (368)
T 2gru_A 158 PPRFVFADTRILSESPPRQVKAGMCELVKNMLILENDNKEFTEDDLNSANVYSPKQLETFINFCISAKMSVLSEDIYEKK 237 (368)
T ss_dssp CCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHSCCSCCSCCGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHTTCTTSSS
T ss_pred CCCEEEEchHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhhHHHHHhhcHHHHHHHHHHHHHHHHHHhccCchhhC
Confidence 99999999999999999999999999999999999999998876533444444567889999999999999999999999
Q ss_pred hHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHH
Q 023154 162 LRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKSI 241 (286)
Q Consensus 162 ~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~~ 241 (286)
+|+++|+|||++|+||...+| +++||++||+||++++++++++|+.+++.++++.++++++|+|+++++.++++++++.
T Consensus 238 ~r~~ln~Ght~~Haie~~~~~-~~~HGeavAigm~~~~~la~~~g~~~~~~~~~i~~ll~~~glP~~l~~~i~~~~~~~~ 316 (368)
T 2gru_A 238 KGLIFEYGHTIGHAIELAEQG-GITHGEAIAVGMIYAAKIANRMNLMPEHDVSAHYWLLNKIGALQDIPLKSDPDSIFHY 316 (368)
T ss_dssp GGGGGGTTHHHHHHHHHHTTT-SSCHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTTTTSCCCCCCHHHHHHH
T ss_pred chhhhcchhHHHHHHHHccCC-CCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCcCCCCHHHHHHH
Confidence 999999999999999998776 7999999999999999999999999999999999999999999999866789999999
Q ss_pred HHhchh-----ccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHH
Q 023154 242 MAVDKK-----VADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 281 (286)
Q Consensus 242 l~~dkk-----~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~ 281 (286)
|.+||| +++|+++|+||++ ||++.+..+++++++.++++
T Consensus 317 ~~~dkK~~~~~~~~~~~~~vll~~-iG~~~~~~~v~~~~~~~~~~ 360 (368)
T 2gru_A 317 LIHDNKRGYIKLDEDNLGMILLSG-VGKPAMYNQTLLTPVRKTLI 360 (368)
T ss_dssp HHTCCSSSSSBCSSSEEEECCEEE-TTEECCBTTBSCEEEEHHHH
T ss_pred HHHhhccccccccCCEEEEEEEcC-CCceEEeCCCCHHHHHHHHH
Confidence 999999 9999999999997 99999877788888877664
No 5
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=100.00 E-value=8.6e-64 Score=464.02 Aligned_cols=268 Identities=35% Similarity=0.495 Sum_probs=239.6
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
+++.++++.+++++++|.|+||||||||++|+|||+|++|+||+||++||||+++|+|+++|+|+++|++.+||.+|.|+
T Consensus 68 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~ak~~A~~~~rgip~i~IPTTlla~vds~~g~k~~i~~~~~kn~ig~~~ 147 (348)
T 1ujn_A 68 EVYGKVLSWLAEKGLPRNATLLVVGGGTLTDLGGFVAATYLRGVAYLAFPTTTLAIVDASVGGKTGINLPEGKNLVGAFH 147 (348)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCcHHHHHHHHHHHHhccCCCEEEecCcHHHhhccccCceEEEecCCcceeeccCc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHH---HHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChh
Q 023154 82 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFF---EWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEK 158 (286)
Q Consensus 82 ~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f---~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~ 158 (286)
+|.+||+||+++.|+|++++++|++|++||+++.||+|| +|++.+. +.+.+++.+++..|.+++.+|++
T Consensus 148 ~P~~vi~D~~~l~tlP~~~~~aG~~d~lkh~~i~d~~~~~~~~~l~~~~--------~~l~~~i~~~~~~k~~~v~~d~~ 219 (348)
T 1ujn_A 148 FPQGVYAELRALKTLPLPTFKEGLVEAFKHGLIAGDEALLKVEDLTPQS--------PRLEAFLARAVAVKVRVTEEDPL 219 (348)
T ss_dssp CCSEEEEEGGGGGGSCHHHHHHHHHHHHHHHHHHTCGGGGCCTTCCTTC--------TTHHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCEEEECHHHHhhCCHHHHHhHHHHHHHHHHHcCHHHhcchHHHHhhH--------HHHHHHHHHHHHHHHHHhhcCch
Confidence 999999999999999999999999999999999999999 7776532 33678899999999999999999
Q ss_pred hhhhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHH
Q 023154 159 ESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMF 238 (286)
Q Consensus 159 ~~g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~ 238 (286)
|.|+|+.+|+||+++|+||..++| +++||++||+||++++++++++| +.+.++++.++++++| |+++++ ++++++
T Consensus 220 e~g~r~~ln~GHt~~Hale~~~~~-~~~HGeavAig~~~~~~la~~~g--~~~~~~~i~~ll~~~g-P~~l~~-~~~~~~ 294 (348)
T 1ujn_A 220 EKGKRRLLNLGHTLGHALEAQTRH-ALPHGMAVAYGLLYAALLGRALG--GEDLLPPVRRLLLWLS-PPPLPP-LAFEDL 294 (348)
T ss_dssp SSSGGGGGGTTHHHHHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHC-CCCCCC-CCHHHH
T ss_pred hhchhhHhcchHHHHHHHHhccCC-CCChHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhC-CCCCCc-CCHHHH
Confidence 999999999999999999998666 69999999999999999999988 5667999999999999 999985 789999
Q ss_pred HHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHHh
Q 023154 239 KSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC 284 (286)
Q Consensus 239 ~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~~ 284 (286)
+++|.+|||+++++++|++|++ ||++.+...+ ++++.++++++.
T Consensus 295 ~~~~~~dkk~~~~~~~~~ll~~-iG~~~~~~~~-~~~l~~~~~~~~ 338 (348)
T 1ujn_A 295 LPYLLRDKKKVSESLHWVVPLA-PGRLVVRPLP-EGLLREAFAAWR 338 (348)
T ss_dssp GGGC---------CCCEEEEEE-TTEEEEECCC-HHHHHHHHHHHH
T ss_pred HHHHHHHHheeCCeEEEEEEcC-CCceEEecCC-HHHHHHHHHHHH
Confidence 9999999999999999999997 9999987544 458888887653
No 6
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=100.00 E-value=1.6e-62 Score=462.49 Aligned_cols=278 Identities=40% Similarity=0.593 Sum_probs=244.1
Q ss_pred hHHHHHHHHHHHcC--CCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccc
Q 023154 2 DTLMKVFDKAIESR--LDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGA 79 (286)
Q Consensus 2 ~~v~~~~~~~~~~~--~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~ 79 (286)
+++.++++.+++++ ++|.|+|||||||+++|+|||+|++|+||+|+++||||+++|+|+++|+|+++|.+.+||.+|.
T Consensus 87 ~~v~~~~~~~~~~~~~~~r~d~iIalGGGsv~D~ak~~Aa~~~rgip~i~IPTTlla~~dasvg~kt~i~~~~~kn~~g~ 166 (393)
T 1sg6_A 87 QTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTGFVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGA 166 (393)
T ss_dssp HHHHHHHHHHHTSSSCCCTTCEEEEEESHHHHHHHHHHHHHGGGCCEEEEEECSHHHHHTTTSSCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEECCcHHHHHHHHHHHHhcCCCCEEEECCchhhhhhcCcceEEeecCCCccccccc
Confidence 67899999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcC-------C-------HHHHHHHHHHH
Q 023154 80 FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMAR-------D-------PRAFAYAIKRS 145 (286)
Q Consensus 80 ~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~-------~-------~~~l~~~i~~~ 145 (286)
|++|..||+||+++.|+|++++++|++|++||+++.||++|++++.+...+++. . .+.+.+++.++
T Consensus 167 ~~~P~~viiD~~~l~tlP~~~~~sG~aE~iK~~~i~d~~~~~~l~~~~e~~~~~~~~~~~d~~~a~~~i~~~l~~~i~~~ 246 (393)
T 1sg6_A 167 IWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKARILAS 246 (393)
T ss_dssp ECCCSEEEEEGGGGGTSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCCCCTTSCTTGGGHHHHHHHHHHH
T ss_pred ccCCcEEEEchHHHccCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHhhccccccchhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998754433221 1 25678889999
Q ss_pred HHhhhhhhccChhhhhhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 023154 146 CENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKL 225 (286)
Q Consensus 146 ~~~~~~~v~~d~~~~g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~gl 225 (286)
+..|.+++..|+++.|+|+.+|+||+|+|+||..+++ +++||++||+||++++++++++|+.+++.++++.++++++|+
T Consensus 247 ~~~k~~~v~~d~~e~G~~~~l~~gHt~~Hale~~~~~-~~~HGeavAigm~~~~~la~~~g~~~~~~~~~i~~ll~~~gl 325 (393)
T 1sg6_A 247 ARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTP-QILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGL 325 (393)
T ss_dssp HHHHHHHHHC-----CGGGGGGTTHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcChhhhcchhhhChHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999998755 799999999999999999999999889999999999999999
Q ss_pred CCCCCCC----------CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEc--CCCCHHHHHHHHH
Q 023154 226 PTAPPDT----------MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFT--GDYDRKALDDTLY 281 (286)
Q Consensus 226 p~~l~~~----------~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~--~~v~~~~~~~~~~ 281 (286)
|+++++. .+++++++.|..|||+++++++|++|++ ||++.+. .++++++++++++
T Consensus 326 P~~l~~~gi~~~~~~~~~~~~~~~~~m~~dkk~~~~~~~~vl~~~-iG~~~~~~~~~v~~~~~~~~~~ 392 (393)
T 1sg6_A 326 PTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPKKKIVLLSA-IGTPYETRASVVANEDIRVVLA 392 (393)
T ss_dssp CCSTTCHHHHHHTTTCCCCHHHHHHHHHTCCE-------ECCEEE-TTEESSSSCEECCHHHHHHHCC
T ss_pred CccchhhccccccccccCCHHHHHHHhhhcccccCCeEEEEEEcc-cCcEEEeCCCCCCHHHHHHHhc
Confidence 9999763 4889999999999999999999999997 9998764 4799999988753
No 7
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=100.00 E-value=5.1e-62 Score=453.33 Aligned_cols=274 Identities=36% Similarity=0.558 Sum_probs=232.6
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
+++.++++.+++++++|.|+||||||||++|+|||+|++|+||+|+++||||+++| |+++|+|+++|.+.+||.+|.|+
T Consensus 74 ~~v~~~~~~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~~rgip~i~IPTT~~a~-ds~vg~K~~i~~~~~kn~~g~~~ 152 (354)
T 1xah_A 74 EQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFVAATLLRGVHFIQVPTTILAH-DSSVGGKVGINSKQGKNLIGAFY 152 (354)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEEESHHHHHHHHHHHHHBTTCCEEEEEECSTTHH-HHTSSCEEEECCSSSTTCEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCceEEEECChHHHHHHHHHHHHhccCCCEEEECCccccc-ccccCceEEEEcCCceeeeecCC
Confidence 67899999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHH--Hhh-cCCHHHHHHHHHHHHHhhhhhhccChh
Q 023154 82 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMH--KLM-ARDPRAFAYAIKRSCENKAEVVSLDEK 158 (286)
Q Consensus 82 ~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~--~~~-~~~~~~l~~~i~~~~~~~~~~v~~d~~ 158 (286)
+|..||+||+++.|+|++++++|++|++||+++.||.||++++++.+ +.+ .. +.+.+.+.+++..+.+++..|+.
T Consensus 153 ~P~~viiDp~~l~tlP~~~~~aG~~d~lkha~i~De~~~~~~~~~~~~~~~~~a~--~~l~~~l~~~~~~~~~~~~~d~~ 230 (354)
T 1xah_A 153 RPTAVIYDLDFLKTLPFKQILSGYAEVYKHALLNGESATQDIEQHFKDREILQSL--NGMDKYIAKGIETKLDIVVADEK 230 (354)
T ss_dssp CCSEEEEEGGGGGGCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCSHHHHHHT--TTHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCcEEEEcHHHHhhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhhhhhhhhhhHH--HHHHHHHHHHHHHHHHHhccCch
Confidence 99999999999999999999999999999999999999999987644 443 33 45678899999999999999999
Q ss_pred hhhhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHH
Q 023154 159 ESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMF 238 (286)
Q Consensus 159 ~~g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~ 238 (286)
+.|.|+++|+||+++|+|| . |++++||++||+||++++++++++|. +.+.++++.++++++|+|+++++.++.+++
T Consensus 231 e~g~r~~l~~gHt~~Hale-~--~~~~~HG~avaig~~~~~~la~~~g~-~~~~~~~i~~l~~~~glP~~l~~~l~~~~~ 306 (354)
T 1xah_A 231 EQGVRKFLNLGHTFGHAVE-Y--YHKIPHGHAVMVGIIYQFIVANALFD-SKHDISHYIQYLIQLGYPLDMITDLDFETL 306 (354)
T ss_dssp SSSGGGGGGTTTHHHHHHH-H--HHCCCHHHHHHHHHHHHHHHHHHHTC-CCCCHHHHHHHHHHHTCCCC----------
T ss_pred hhCCccccccHHHHHHHHh-c--CCCCCcHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCcCCCCCCCCCHHHH
Confidence 9999999999999999999 3 43689999999999999999999998 767799999999999999999754577889
Q ss_pred HHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHHh
Q 023154 239 KSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC 284 (286)
Q Consensus 239 ~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~~ 284 (286)
++.|.+|||+++++++|+++++ ||++.+.. ++++++.++++++-
T Consensus 307 ~~~~~~dkk~~~~~~~~~l~~~-iG~~~~~~-~~~~~l~~~~~~~~ 350 (354)
T 1xah_A 307 YQYMLSDKKNDKQGVQMVLMRQ-FGDIVVQH-VDQLTLQHACEQLK 350 (354)
T ss_dssp -------------CBCCEEEEE-TTEEEECC-BCHHHHHHHHHHHH
T ss_pred HHHHHHhHhhcCCCEEEEEEcc-cCcEEEec-CCHHHHHHHHHHHH
Confidence 9999999999999999999997 99999874 99999999998763
No 8
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=100.00 E-value=9.6e-43 Score=323.53 Aligned_cols=249 Identities=18% Similarity=0.222 Sum_probs=197.6
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
+++.++ +.+++.++| +||||||||++|+||++| |++++|+++||||+++ ||.++++++|+..+.|+.++ ++
T Consensus 76 ~~v~~~-~~~~~~~~d---~IIavGGGsv~D~aK~vA--~~~~~p~i~IPTT~~t--gse~t~~avi~~~~~K~~i~-~~ 146 (354)
T 3ce9_A 76 DEIGTN-AFKIPAEVD---ALIGIGGGKAIDAVKYMA--FLRKLPFISVPTSTSN--DGFSSPVASLLINGKRTSVP-AK 146 (354)
T ss_dssp HHHHHH-HTTSCTTCC---EEEEEESHHHHHHHHHHH--HHHTCCEEEEESCCSS--GGGTSSEEEEEETTEEEEEE-CC
T ss_pred HHHHHH-HHhhhcCCC---EEEEECChHHHHHHHHHH--hhcCCCEEEecCcccC--CCCCCCceEEEeCCceeeec-CC
Confidence 577888 888876555 999999999999999997 7899999999999987 89999999999888898886 79
Q ss_pred CcceeeeehHhhcCCCHHHHHhhHHHHH-HHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhh-hhhhccChhh
Q 023154 82 QPQCVLVDTDTLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENK-AEVVSLDEKE 159 (286)
Q Consensus 82 ~P~~viiD~~~l~tlP~~~~~~G~~D~l-k~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-~~~v~~d~~~ 159 (286)
+|..||+||+++.|+|++++++|++|++ |+..+.||++|+++..... +...+.+.+...+.+..+ ...+. | +
T Consensus 147 ~P~~vi~Dp~ll~tlP~~~~~~g~~Dal~h~~~~~d~~~~~~~~~~~~---~~~~~~la~~~~~~i~~~l~~~~~-~--~ 220 (354)
T 3ce9_A 147 TPDGIVVDIDVIKGSPEKFIYSGIGDLVSNITALYDWKFEEENHKSII---DDFAVMISKKSVNSFVRTDFKSIK-D--E 220 (354)
T ss_dssp CCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC---CHHHHHHHHHHHHHHHHCCCSCTT-C--H
T ss_pred CCcEEEEcHHHHHhCCHHHHHhhHHHHHHHHHHHHHHHHHHhhccCCC---CHHHHHHHHHHHHHHHHhHHHHhc-C--H
Confidence 9999999999999999999999999999 6666778888877654210 111344555566666665 34333 2 3
Q ss_pred hhhHHhhc--------------------cchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 023154 160 SGLRATLN--------------------LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNI 219 (286)
Q Consensus 160 ~g~r~~l~--------------------~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~ 219 (286)
.+.|.++| +||+++|+||..+++ +++||++||+|+.++.+++. +..+++.++
T Consensus 221 ~~~~~~l~a~~~aG~a~~~~g~~r~~~g~~H~i~hal~~~~~~-~~~HG~avai~~~~~~~~~~-------~~~~~i~~l 292 (354)
T 3ce9_A 221 VFLKELVDSLTMNGIAMEIAGNSSPASGAEHLISHALDKFLPN-PQLHGIQVGVATYIMSKVHK-------HREERIKKI 292 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSTTTCSHHHHHHHHHHHHCSS-CCCHHHHHHHHHHHHHHHHT-------SSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHhHHHHhCCCC-CCCcHHHHHHHHHHHHHHcc-------ccHHHHHHH
Confidence 34444433 789999999997544 69999999999877777753 246899999
Q ss_pred HHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHH
Q 023154 220 LQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 220 l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~ 283 (286)
++++|+|+++++. ++++++.+.+..++|+++++ +++++ | ..+++++++++++..
T Consensus 293 ~~~~glP~~l~~~gi~~~~~~~~~~~~~~~~~~~--~~~~~-p-------~~~~~~~~~~i~~~~ 347 (354)
T 3ce9_A 293 LSDTGFFNYVKGLNMKKSDFKRAISEAHLIKPAR--YTYLH-V-------EKNCETAKEIVDTDE 347 (354)
T ss_dssp HHHTTHHHHHHTTCCCHHHHHHHHHHHHHHSTTS--CCGGG-S-------HHHHHHHHHHHHHCH
T ss_pred HHHCCCCCCHHHcCCCHHHHHHHHHHHHHhccCc--eeecC-C-------CCCCHHHHHHHHHhH
Confidence 9999999998774 78999999999999988774 33333 2 357789999988753
No 9
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=100.00 E-value=3.6e-39 Score=301.18 Aligned_cols=253 Identities=23% Similarity=0.268 Sum_probs=186.4
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
+++.++++.++++++| +||||||||++|+||++| +++|+|+++|||| +++||++++++.|+.+.+|++.+.++
T Consensus 73 ~~v~~~~~~~~~~~~d---~IIavGGGsv~D~aK~iA--~~~~~p~i~IPTT--a~tgSevt~~avi~~~~~~~k~~~~~ 145 (370)
T 1jq5_A 73 NEVERIANIARKAEAA---IVIGVGGGKTLDTAKAVA--DELDAYIVIVPTA--ASTDAPTSALSVIYSDDGVFESYRFY 145 (370)
T ss_dssp HHHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHH--HHHTCEEEEEESS--CCSSCTTCSEEEEECTTSCEEEEEEC
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCChHHHHHHHHHH--HhcCCCEEEeccc--cCCCcccCCeEEEEcCCCceEeeccC
Confidence 5789999999999986 999999999999999997 7899999999999 66699999999999988888888775
Q ss_pred --CcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcC--C--HHHH-----HHHHHHHH----
Q 023154 82 --QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMAR--D--PRAF-----AYAIKRSC---- 146 (286)
Q Consensus 82 --~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~--~--~~~l-----~~~i~~~~---- 146 (286)
+|.+||+||+++.|+|++++++|++|+++|++ +.|+....... .+... . .+.+ ..++....
T Consensus 146 ~~~P~~viiDp~ll~tlP~~~~a~g~~Dal~h~~---E~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~l~~~~~~a~~ 221 (370)
T 1jq5_A 146 KKNPDLVLVDTKIIANAPPRLLASGIADALATWV---EARSVIKSGGK-TMAGGIPTIAAEAIAEKCEQTLFKYGKLAYE 221 (370)
T ss_dssp SSCCSEEEEEHHHHHTSCHHHHHHHHHHHHHHHH---HHHHHHHHTCC-CTTSSBCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEChHHHHhCCHHHHHHHHHHHHHHHH---HHHHhhhcCCc-ccccccccHHHHHHHHHHHHHHHHHhHHHHH
Confidence 89999999999999999999999999999998 55554322110 00000 0 1111 11222221
Q ss_pred HhhhhhhccChh--------hhhhHHhhccchhHHHHhHhcc----C-CCCCChHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 023154 147 ENKAEVVSLDEK--------ESGLRATLNLGHTFGHAIETGF----G-YGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIV 213 (286)
Q Consensus 147 ~~~~~~v~~d~~--------~~g~r~~l~~GHt~~Hale~~~----~-~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~ 213 (286)
..+...+.++.. ..|+ .++|+||+++|+||... + +.+++||++||+|+++.+.++ ..+.+.+
T Consensus 222 ~~k~~~~~~ar~~~~~a~~~~aG~-a~~n~g~~~~Hai~~~l~~~~~~~~~i~HG~ava~g~~~~~~~~----~~~~~~~ 296 (370)
T 1jq5_A 222 SVKAKVVTPALEAVVEANTLLSGL-GFESGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALE----EHSQQEI 296 (370)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHGGGSCSGGGGSCHHHHHHHHHHHHHHHS----CCCHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhHH-HhhccccHHHHHHhhHhhccccCCCCCCcHHHHHHHHHHHHHHc----cCcHHHH
Confidence 122233333332 3566 67899999999998863 2 336999999999999887663 2467789
Q ss_pred HHHHHHHHHcCCCCCCCCC-CC---HHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHH
Q 023154 214 KRVHNILQQAKLPTAPPDT-MT---VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 214 ~~i~~~l~~~glp~~l~~~-~~---~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~ 283 (286)
+++.+|++++|+|+++++. ++ ++++ . ..++|...+ ... +|+. ..++++++.+++++.
T Consensus 297 ~~i~~l~~~~glP~~l~~~gi~~~~~~~~-~--~~a~~a~~~------~~~-~~~p---~~~~~~~i~~il~~~ 357 (370)
T 1jq5_A 297 ERYIELYLCLDLPVTLEDIKLKDASREDI-L--KVAKAATAE------GET-IHNA---FNVTADDVADAIFAA 357 (370)
T ss_dssp HHHHHHHHHTTCCCSTTTTTCTTCCHHHH-H--HHHHHHTST------TCG-GGGT---CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHcCCCcccHHHH-H--HHHHHHhCc------chh-hhCC---CCCCHHHHHHHHHHH
Confidence 9999999999999999874 44 4443 3 333444322 122 5553 578999999999764
No 10
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=100.00 E-value=3.3e-39 Score=303.06 Aligned_cols=251 Identities=16% Similarity=0.115 Sum_probs=185.9
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHH---------hh-------cCCcEEEeccchhhccccCcCcc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---------YL-------RGVSFIQIPTTVMAQVDSSVGGK 65 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~---------~~-------~gip~i~VPTTl~~~~das~g~k 65 (286)
+++.++++.++++++| +||||||||++|+||++|+. |. +++|+++||||+++ ||.++++
T Consensus 79 ~~v~~~~~~~~~~~~d---~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gt--gSevt~~ 153 (387)
T 3bfj_A 79 TNVRDGLAVFRREQCD---IIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPPIVAVNTTAGT--ASEVTRH 153 (387)
T ss_dssp HHHHHHHHHHHHTTCC---EEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCCEEEEECSTTC--CGGGCSE
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCc--cccccCc
Confidence 6899999999999997 99999999999999999987 55 89999999999866 8999999
Q ss_pred eeeecCCc--ccccc-cccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHH
Q 023154 66 TGINHRLG--KNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAI 142 (286)
Q Consensus 66 ~~i~~~~~--k~~~g-~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i 142 (286)
+.|+.+.. |+.++ .+++|.++|+||+++.|+|++++++|++|+++|++ +.|++....... +.+.+..
T Consensus 154 avi~~~~~~~K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~hai---E~~~s~~~~~~~-------d~~a~~a 223 (387)
T 3bfj_A 154 CVLTNTETKVKFVIVSWRNLPSVSINDPLLMIGKPAALTAATGMDALTHAV---EAYISKDANPVT-------DAAAMQA 223 (387)
T ss_dssp EEEEETTTTEEEEEECGGGSCSEEEECGGGTTTCCHHHHHHHHHHHHHHHH---HHHHSTTCCHHH-------HHHHHHH
T ss_pred EEEEEcCCCceeeccCCccccCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHH-------HHHHHHH
Confidence 99988654 88777 57899999999999999999999999999999999 555543222111 2221112
Q ss_pred HHHHHhhhhhhccChhhhhhH------------Hhhc----cchhHHHHhHhccCCCCCChHHHHHHHHHHH--------
Q 023154 143 KRSCENKAEVVSLDEKESGLR------------ATLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMA-------- 198 (286)
Q Consensus 143 ~~~~~~~~~~v~~d~~~~g~r------------~~l~----~GHt~~Hale~~~~~~~~~HG~aVaig~~~~-------- 198 (286)
.+.+....+.+.+|+.+.+.| .++| ++|+++|+++.. | +++||++||++|+..
T Consensus 224 i~~i~~~l~~~v~d~~d~~ar~~~~~as~laG~a~~~~g~~~~Hai~h~l~~~--~-~i~HG~avai~lp~v~~~~~~~~ 300 (387)
T 3bfj_A 224 IRLIARNLRQAVALGSNLQAREYMAYASLLAGMAFNNANLGYVHAMAHQLGGL--Y-DMPHGVANAVLLPHVARYNLIAN 300 (387)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHccCcHHHHHhhhHHhcC--c-CCChHHHHHHHHHHHHHHHhhhh
Confidence 222222223333666666666 2444 458888888865 4 799999999999984
Q ss_pred ----HHHHHHcCCC---------CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcc
Q 023154 199 ----VDMSYRLGWI---------DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGN 264 (286)
Q Consensus 199 ----~~l~~~~g~~---------~~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~ 264 (286)
.++++.+|.. .++.++++.+|++++|+|+++++. ++++++ +.+...-.. ++ .. .++
T Consensus 301 ~~~~~~la~~lg~~~~~~~~~~~~~~~~~~i~~l~~~~glp~~l~~~gi~~~~~-~~~a~~a~~-~~-------~~-~~n 370 (387)
T 3bfj_A 301 PEKFADIAELMGENITGLSTLDAAEKAIAAITRLSMDIGIPQHLRDLGVKETDF-PYMAEMALK-DG-------NA-FSN 370 (387)
T ss_dssp HHHHHHHHHHTTCCCTTCCHHHHHHHHHHHHHHHHHHTTCCCCGGGGTCCGGGH-HHHHHHHHH-SG-------GG-TTC
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH-HHHHHHHHh-Cc-------cc-cCC
Confidence 5677777764 134689999999999999999875 666665 333332111 11 11 222
Q ss_pred eEEcCCCCHHHHHHHHHHH
Q 023154 265 CVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 265 ~~~~~~v~~~~~~~~~~~~ 283 (286)
. ..++.+++.+++++.
T Consensus 371 p---~~~~~~~i~~i~~~~ 386 (387)
T 3bfj_A 371 P---RKGNEQEIAAIFRQA 386 (387)
T ss_dssp S---SCCCHHHHHHHHHHH
T ss_pred C---CCCCHHHHHHHHHHh
Confidence 3 578899999999763
No 11
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=100.00 E-value=5.6e-39 Score=301.41 Aligned_cols=252 Identities=19% Similarity=0.186 Sum_probs=185.2
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh------------------hcCCcEEEeccchhhccccCcC
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY------------------LRGVSFIQIPTTVMAQVDSSVG 63 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~------------------~~gip~i~VPTTl~~~~das~g 63 (286)
+++.++++.++++++| +||||||||++|+||++|+.+ ++++|+++||||+++ ||.++
T Consensus 75 ~~v~~~~~~~~~~~~d---~IIavGGGsv~D~aK~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT~gt--gSevt 149 (386)
T 1rrm_A 75 TVVKEGLGVFQNSGAD---YLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGT--AAEVT 149 (386)
T ss_dssp HHHHHHHHHHHHHTCS---EEEEEESHHHHHHHHHHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEECSSSC--CTTTC
T ss_pred HHHHHHHHHHHhcCcC---EEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeCCCCc--hhhhC
Confidence 6899999999999997 999999999999999999988 789999999999876 89999
Q ss_pred cceeeecCCc--ccccc-cccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHH
Q 023154 64 GKTGINHRLG--KNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAY 140 (286)
Q Consensus 64 ~k~~i~~~~~--k~~~g-~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~ 140 (286)
+++.|+.+.. |+.++ .+++|.++|+||+++.|+|++++++|++|+++|++ +.||+...+...+.+ .....+
T Consensus 150 ~~avi~~~~~~~K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---E~~~s~~~~~~~d~~---a~~a~~ 223 (386)
T 1rrm_A 150 INYVITDEEKRRKFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAI---EGYITRGAWALTDAL---HIKAIE 223 (386)
T ss_dssp SEEEEEETTTTEEEEEECGGGCCSEEEECGGGTTTSCHHHHHHHHHHHHHHHH---HHHHSTTCCHHHHHH---HHHHHH
T ss_pred CcEEEEeCCCCeeEeecCCccccCEEEEChhhhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCHHHHHH---HHHHHH
Confidence 9999988654 88777 57899999999999999999999999999999999 666543222211211 111122
Q ss_pred HHHHHHHhhhhhhccCh--hhh--------hhHHhhc----cchhHHHHhHhccCCCCCChHHHHHHHHHHH--------
Q 023154 141 AIKRSCENKAEVVSLDE--KES--------GLRATLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMA-------- 198 (286)
Q Consensus 141 ~i~~~~~~~~~~v~~d~--~~~--------g~r~~l~----~GHt~~Hale~~~~~~~~~HG~aVaig~~~~-------- 198 (286)
.+.+.+. +.+..|. .+. |+ .++| ++|+++|+|+.. | +++||++||++|+..
T Consensus 224 ~i~~~l~---~~~~~d~~ar~~~~~as~laG~-a~~~~g~g~~H~i~h~l~~~--~-~i~HG~avai~lp~~~~~~~~~~ 296 (386)
T 1rrm_A 224 IIAGALR---GSVAGDKDAGEEMALGQYVAGM-GFSNVGLGLVHGMAHPLGAF--Y-NTPHGVANAILLPHVMRYNADFT 296 (386)
T ss_dssp HHHHHHH---HHHTTCHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHH---HHHHcCHHHHHHHHHHHHHHHH-HHHccCcHHHHHhccHHhcC--c-CCChHHHHHHHHHHHHHHhhhhh
Confidence 3333322 1122332 221 33 3444 569999999986 4 699999999999986
Q ss_pred ----HHHHHHcCCC---------CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcc
Q 023154 199 ----VDMSYRLGWI---------DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGN 264 (286)
Q Consensus 199 ----~~l~~~~g~~---------~~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~ 264 (286)
.++++.+|.. ..+.++++.+|++++|+|+++++. ++++++- .+...- .++. .. .++
T Consensus 297 ~~~~~~la~~~g~~~~~~~~~~~~~~~~~~i~~l~~~lglp~~l~~~gi~~~~~~-~~a~~a-~~~~-------~~-~~n 366 (386)
T 1rrm_A 297 GEKYRDIARVMGVKVEGMSLEEARNAAVEAVFALNRDVGIPPHLRDVGVRKEDIP-ALAQAA-LDDV-------CT-GGN 366 (386)
T ss_dssp TTHHHHHHHHTTCCCTTCCHHHHHHHHHHHHHHHHHHTTCCSSGGGGTCCGGGHH-HHHHHH-HTCG-------GG-GGC
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHhcCCCHHHHH-HHHHHH-Hhcc-------cc-cCC
Confidence 3667667754 234689999999999999999874 6766653 333321 1111 11 222
Q ss_pred eEEcCCCCHHHHHHHHHHHh
Q 023154 265 CVFTGDYDRKALDDTLYAFC 284 (286)
Q Consensus 265 ~~~~~~v~~~~~~~~~~~~~ 284 (286)
. ..++++++++++++..
T Consensus 367 p---~~~~~~~i~~i~~~~~ 383 (386)
T 1rrm_A 367 P---REATLEDIVELYHTAW 383 (386)
T ss_dssp S---SCCCHHHHHHHHHHHH
T ss_pred C---CCCCHHHHHHHHHHHh
Confidence 2 5788999999998653
No 12
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=100.00 E-value=5.1e-37 Score=289.98 Aligned_cols=255 Identities=16% Similarity=0.232 Sum_probs=183.5
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh----------------hcCCcEEEeccchhhccccCcCcc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGK 65 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~----------------~~gip~i~VPTTl~~~~das~g~k 65 (286)
+++.++++.++++++| +||||||||++|+||++|+.+ .+++|+++||||+++ ||.++++
T Consensus 88 ~~v~~~~~~~~~~~~D---~IIavGGGsviD~AK~iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagt--gSevt~~ 162 (407)
T 1vlj_A 88 SKVHEAVEVAKKEKVE---AVLGVGGGSVVDSAKAVAAGALYEGDIWDAFIGKYQIEKALPIFDVLTISAT--GTEMNGN 162 (407)
T ss_dssp HHHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHHHHTTCSSCGGGGGGTSCCCCCCCCEEEEECSCSS--CGGGSSE
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCChhHHHHHHHHHHHHhCCCCHHHHhcccccCCCCCCEEEEeCCCCc--chhhcCe
Confidence 6799999999999997 999999999999999999875 279999999999876 8999999
Q ss_pred eeeecCC--cccccc-cccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHH
Q 023154 66 TGINHRL--GKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAI 142 (286)
Q Consensus 66 ~~i~~~~--~k~~~g-~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i 142 (286)
+.|+.+. .|+.++ .+++|.++|+||+++.|+|++++++|++|+++|++ +.|++. ..+ .+ .+.+.+..
T Consensus 163 avi~~~~~~~K~~i~~~~~~P~~ai~Dp~l~~tlP~~~~aag~~Dal~hai---E~~~s~-~~~--~~----~d~~a~~a 232 (407)
T 1vlj_A 163 AVITNEKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHIL---EYYFDG-SSP--EI----SNEIAEGT 232 (407)
T ss_dssp EEEEETTTTEEEEEECGGGSCSEEEECGGGGGGSCHHHHHHHHHHHHHHHH---HHHTSS-CCC--HH----HHHHHHHH
T ss_pred EEEEECCCCeEEEecCCCccceEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHcC-CCC--HH----HHHHHHHH
Confidence 9888764 477775 47899999999999999999999999999999999 555543 111 01 22222222
Q ss_pred HHHHHhhhhhhccChhhhhhH------------Hhhc--------cchhHHHHhHhccCCCCCChHHHHHHHHHHHHH--
Q 023154 143 KRSCENKAEVVSLDEKESGLR------------ATLN--------LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD-- 200 (286)
Q Consensus 143 ~~~~~~~~~~v~~d~~~~g~r------------~~l~--------~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~-- 200 (286)
.+.+....+.+.+|+.+...| .++| .+|+++|+|+.. | +++||++||++++..++
T Consensus 233 i~~i~~~l~~a~~d~~d~~aR~~m~~as~lag~a~~~~g~~~~~~~~Hai~h~l~~~--~-~i~HG~a~ai~lp~v~~~~ 309 (407)
T 1vlj_A 233 IRTIMKMTERLIEKPDDYEARANLAWSATIALNGTMAVGRRGGEWACHRIEHSLSAL--Y-DIAHGAGLAIVFPAWMKYV 309 (407)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTSSTTTTTSCSCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHhhHHHhC--c-CCChHHHHHHHHHHHHHHh
Confidence 222222223333555555555 2344 349999999986 4 69999999999987633
Q ss_pred ----------HHHH-cCCCC------HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchh-----ccCCeeEEEe
Q 023154 201 ----------MSYR-LGWID------DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKK-----VADGLLRLIL 257 (286)
Q Consensus 201 ----------l~~~-~g~~~------~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk-----~~~~~~~~~l 257 (286)
++.+ +|... ++.++++.+|++++|+|+++++. ++++++-+......+ .|.+.
T Consensus 310 ~~~~~~~~~~la~~~~g~~~~~~~~~~~~~~~i~~l~~~lglP~~l~elgi~~~~i~~~a~~a~~~~~~~~rp~~----- 384 (407)
T 1vlj_A 310 YRKNPAQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNLKPKG----- 384 (407)
T ss_dssp GGGSHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTTCCCSTGGGTCCGGGHHHHHHHHHHHHHHTTGGGT-----
T ss_pred hhhcHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhhhhhcccccc-----
Confidence 4443 46532 44679999999999999999874 666665333332222 22111
Q ss_pred ecCCCcceEEcCCCCHHHHHHHHHHHh
Q 023154 258 LKGPLGNCVFTGDYDRKALDDTLYAFC 284 (286)
Q Consensus 258 ~~~~iG~~~~~~~v~~~~~~~~~~~~~ 284 (286)
.. .+.. ..++++++++++++..
T Consensus 385 -~~-~~np---~~~t~e~i~~i~~~~~ 406 (407)
T 1vlj_A 385 -AS-LGRI---MVLEREDVREILKLAA 406 (407)
T ss_dssp -CC-SCSS---SCCCHHHHHHHHHHTT
T ss_pred -cc-cCCC---CCCCHHHHHHHHHHHh
Confidence 11 2223 5789999999998643
No 13
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=100.00 E-value=4.4e-37 Score=290.51 Aligned_cols=252 Identities=17% Similarity=0.224 Sum_probs=177.1
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh-------------------cCCcEEEeccchhhccccCc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-------------------RGVSFIQIPTTVMAQVDSSV 62 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~-------------------~gip~i~VPTTl~~~~das~ 62 (286)
+++.++++.++++++| +||||||||++|+||++|+.+. +++|+++||||+++ ||.+
T Consensus 93 ~~v~~~~~~~~~~~~D---~IIavGGGsviD~AK~iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPTTagt--gSev 167 (408)
T 1oj7_A 93 ETLMNAVKLVREQKVT---FLLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPAT--GSES 167 (408)
T ss_dssp HHHHHHHHHHHHHTCC---EEEEEESHHHHHHHHHHHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEESSCSS--CGGG
T ss_pred HHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeCCCch--hHHh
Confidence 6789999999999997 9999999999999999999865 78999999999876 8999
Q ss_pred CcceeeecCCccccccc---ccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHH-hHHHhhcCCHHHH
Q 023154 63 GGKTGINHRLGKNLIGA---FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQ-NMHKLMARDPRAF 138 (286)
Q Consensus 63 g~k~~i~~~~~k~~~g~---~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~-~~~~~~~~~~~~l 138 (286)
++++.|+.+..+++.+. +++|+.+|+||+++.|+|++++++|++|+++|++ +.|+++... ...+.+ ....
T Consensus 168 t~~avi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~tlP~~~~aag~~Dal~hai---Ea~~s~~~~~~~~d~~---a~~a 241 (408)
T 1oj7_A 168 NAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTV---EQYVTKPVDAKIHDRF---AEGI 241 (408)
T ss_dssp SSEEEEEETTTTEEEEEECGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHH---HHHSSSCBCCHHHHHH---HHHH
T ss_pred CCCEEEEECCCCeEEEeeCCCcCccEEEECchhhcCCCHHHHHhHHHHHHHHHH---HHHhcCCCCCHHHHHH---HHHH
Confidence 99999998766444332 4689999999999999999999999999999998 444431111 111111 1111
Q ss_pred HHHHHHHHHhhhhhhccChhhhhhH------------Hhhccc-------hhHHHHhHhccCCCCCChHHHHHHHHHHH-
Q 023154 139 AYAIKRSCENKAEVVSLDEKESGLR------------ATLNLG-------HTFGHAIETGFGYGQWLHGEAVAAGMVMA- 198 (286)
Q Consensus 139 ~~~i~~~~~~~~~~v~~d~~~~g~r------------~~l~~G-------Ht~~Hale~~~~~~~~~HG~aVaig~~~~- 198 (286)
.+.+.+.+ +.+.+|+.+...| .++|+| |+++|+++.. | +++||++||++++..
T Consensus 242 i~~i~~~l----~~av~d~~d~~ar~~~~~as~lag~a~~~~G~~~~~~~Hai~h~l~~~--~-~i~HG~avai~lp~v~ 314 (408)
T 1oj7_A 242 LLTLIEDG----PKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAM--H-GLDHAQTLAIVLPALW 314 (408)
T ss_dssp HHHHHHHH----HHHHHCTTCHHHHHHHHHHHHHHSSSTTTTTSCCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHhCCCCHHHHHHHHHHHHHHHHHHhccCCCCCCchhhhhhHHHhc--c-CCChHHhHHHHHHHHH
Confidence 22333332 2233455443333 244655 6667776654 4 799999999999974
Q ss_pred -----------HHHHHH-cCCC-------CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEee
Q 023154 199 -----------VDMSYR-LGWI-------DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILL 258 (286)
Q Consensus 199 -----------~~l~~~-~g~~-------~~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~ 258 (286)
.+++++ +|.. ..+.++++.+|++++|+|+++++. ++++++ +.+...-. +++..
T Consensus 315 ~~~~~~~~~~~~~la~~~~g~~~~~~~~~~~~~~~~i~~l~~~lglP~~l~~lgi~~~~i-~~~a~~a~-~~~~~----- 387 (408)
T 1oj7_A 315 NEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSI-PALLKKLE-EHGMT----- 387 (408)
T ss_dssp HHTTTTTHHHHHHHHHHHHCCCCSCHHHHHHHHHHHHHHHHHHHTCCCSGGGGTCCSTTH-HHHHHHHH-HTTCS-----
T ss_pred HHHhhhCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH-HHHHHHHH-hcccc-----
Confidence 355654 3654 245689999999999999999874 666654 33433221 11110
Q ss_pred cCCCcceEEcCCCCHHHHHHHHHHH
Q 023154 259 KGPLGNCVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 259 ~~~iG~~~~~~~v~~~~~~~~~~~~ 283 (286)
. .+.. ..++++++++++++.
T Consensus 388 -~-~~~p---~~~t~~~i~~il~~~ 407 (408)
T 1oj7_A 388 -Q-LGEN---HDITLDVSRRIYEAA 407 (408)
T ss_dssp -S-BTTT---TCBCHHHHHHHHHHT
T ss_pred -c-cCCC---CCCCHHHHHHHHHHh
Confidence 0 1222 578899999998763
No 14
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=100.00 E-value=5.9e-37 Score=286.78 Aligned_cols=252 Identities=22% Similarity=0.235 Sum_probs=178.7
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc-
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF- 80 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~- 80 (286)
++++++++.+++ + .|+||||||||++|+||++| +++|+|+++|||| +++||++++++.|+.+.+++..+.+
T Consensus 82 ~~v~~~~~~~~~-~---~d~IIavGGGsv~D~aK~iA--~~~~~p~i~IPTT--a~tgSevt~~avi~~~~~~~k~~~~~ 153 (376)
T 1kq3_A 82 EEIERLSGLVEE-E---TDVVVGIGGGKTLDTAKAVA--YKLKKPVVIVPTI--ASTDAPCSALSVIYTPNGEFKRYLFL 153 (376)
T ss_dssp HHHHHHHTTCCT-T---CCEEEEEESHHHHHHHHHHH--HHTTCCEEEEESS--CCCSCTTSSEEEEECTTSCEEEEEEC
T ss_pred HHHHHHHHHHhc-C---CCEEEEeCCcHHHHHHHHHH--HhcCCCEEEecCc--cccCcccCCeEEEEeCCCCeEeeccC
Confidence 367777777776 4 45999999999999999997 6799999999999 5669999999999988888877776
Q ss_pred -cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcC----CHHHHHH-----HHHHHH----
Q 023154 81 -YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMAR----DPRAFAY-----AIKRSC---- 146 (286)
Q Consensus 81 -~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~----~~~~l~~-----~i~~~~---- 146 (286)
++|.+||+||+++.|+|++++++|++|+++|++ +.|+....... .+... ..+.+.+ ++....
T Consensus 154 ~~~P~~viiDp~l~~tlP~~~~aag~~Dal~h~~---E~~~s~~~~~~-~~~~~~~~~~~~~~a~~~~~~l~~~~~~a~~ 229 (376)
T 1kq3_A 154 PRNPDVVLVDTEIVAKAPARFLVAGMGDALATWF---EAESCKQKYAP-NMTGRLGSMTAYALARLCYETLLEYGVLAKR 229 (376)
T ss_dssp SSCCSEEEEEHHHHHHSCHHHHHHHHHHHHHHHH---HHHHHHHHTCB-CTTSSBCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEchHHHhhCCHHHHHHHHHHHHHHHH---HHHHhhhcCCc-ccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999998 55554332110 00000 0111111 111111
Q ss_pred HhhhhhhccChh--------hhhhHHhhccchhHHHHhHhccC----CCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 023154 147 ENKAEVVSLDEK--------ESGLRATLNLGHTFGHAIETGFG----YGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVK 214 (286)
Q Consensus 147 ~~~~~~v~~d~~--------~~g~r~~l~~GHt~~Hale~~~~----~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~ 214 (286)
..+.....++.. ..|+ .++|+||+++|+|+...+ +.+++||++||+|+++++.++ ..+.+.++
T Consensus 230 ~~~~~~~~~ar~~~~~a~~~~aG~-a~~n~g~~~~Hai~~~l~~~~~~~~i~HG~ava~g~~~~~~~~----~~~~~~~~ 304 (376)
T 1kq3_A 230 SVEEKSVTPALEKIVEANTLLSGL-GFESGGLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLT----DKPRKMIE 304 (376)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHH-HHHHHCCCHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHHT----TCCHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHH-HHhccchHHHHHHhChhhcccccCCCCcHHHHHHHHHHHHHhc----cCCHHHHH
Confidence 112222222221 3556 678999999999987632 247999999999999887663 24677899
Q ss_pred HHHHHHHHcCCCCCCCCC-CC---HHHHHHHHHhchhccCCeeEEEeecCCCcc-eEEcCCCCHHHHHHHHHHH
Q 023154 215 RVHNILQQAKLPTAPPDT-MT---VEMFKSIMAVDKKVADGLLRLILLKGPLGN-CVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 215 ~i~~~l~~~glp~~l~~~-~~---~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~-~~~~~~v~~~~~~~~~~~~ 283 (286)
++.+|++++|+|+++++. ++ .+++ +.+...- ..++. . +++ . ..++++++++++++.
T Consensus 305 ~i~~l~~~~glP~~l~~lgi~~~~~~~~-~~~a~~a-~~~~~-------~-~~n~p---~~~t~~~i~~il~~a 365 (376)
T 1kq3_A 305 EVYSFCEEVGLPTTLAEIGLDGVSDEDL-MKVAEKA-CDKNE-------T-IHNEP---QPVTSKDVFFALKAA 365 (376)
T ss_dssp HHHHHHHHHTCCCSGGGGTCTTCCHHHH-HHHHHHH-TCTTS-------G-GGGSS---SCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHcCCCCCCHHHH-HHHHHHH-hcccc-------h-hhcCC---CCCCHHHHHHHHHHH
Confidence 999999999999999864 54 5554 5555532 22111 0 122 2 478899999999753
No 15
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=100.00 E-value=5e-37 Score=286.76 Aligned_cols=248 Identities=16% Similarity=0.158 Sum_probs=176.1
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh----------------cCCcEEEeccchhhccccCcCcc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL----------------RGVSFIQIPTTVMAQVDSSVGGK 65 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~----------------~gip~i~VPTTl~~~~das~g~k 65 (286)
+++.++++.++++++| +||||||||++|+||++|+.|. +++|+++||||+++ +|.++..
T Consensus 85 ~~v~~~~~~~~~~~~d---~IIavGGGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagt--gse~t~~ 159 (371)
T 1o2d_A 85 DNVMKAVERYRNDSFD---FVVGLGGGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTTAGT--GSEVTPY 159 (371)
T ss_dssp HHHHHHHHHHTTSCCS---EEEEEESHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECSSCC--CGGGCCE
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCCCch--hhhhcCc
Confidence 6789999999988665 9999999999999999999877 89999999999877 4555554
Q ss_pred eeee-cCCcccccccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHH
Q 023154 66 TGIN-HRLGKNLIGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKR 144 (286)
Q Consensus 66 ~~i~-~~~~k~~~g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~ 144 (286)
..+. ..+.|..+. +++|+.+|+||+++.|+|++++++|++|+++|++ +.||++..+...+.+ .....+++.+
T Consensus 160 avi~~~~g~K~~i~-~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---E~~~s~~~~~~~d~~---a~~a~~li~~ 232 (371)
T 1o2d_A 160 SILTDPEGNKRGCT-LMFPVYAFLDPRYTYSMSDELTLSTGVDALSHAV---EGYLSRKSTPPSDAL---AIEAMKIIHR 232 (371)
T ss_dssp EEEECTTSCEEEEE-CCCCSEEEECGGGGGGCCHHHHHHHHHHHHHHHH---HHHHSTTCCHHHHHH---HHHHHHHHHH
T ss_pred eEEEcCCCeeEeee-cccCCEEEECchhhcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCHHHHHH---HHHHHHHHHH
Confidence 4444 234555555 7899999999999999999999999999999999 456554322222221 1123345555
Q ss_pred HHHhhhhhhccChhhhhhHH------------hhccchhHHHHhHhc-cCCCCCChHHHHHHHHHHHHHHHHHcCCCCHH
Q 023154 145 SCENKAEVVSLDEKESGLRA------------TLNLGHTFGHAIETG-FGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDS 211 (286)
Q Consensus 145 ~~~~~~~~v~~d~~~~g~r~------------~l~~GHt~~Hale~~-~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~ 211 (286)
++.. .+..|+. .|. ++|+||+++|+|+.. .++.+++||++||++++..+++..+.+....+
T Consensus 233 ~l~~---~v~~d~~---aR~~~~~as~laG~a~~n~G~~~~Hai~h~l~~~~~i~HG~a~ai~l~~~~~~~~~~~~~~~~ 306 (371)
T 1o2d_A 233 NLPK---AIEGNRE---ARKKMFVASCLAGMVIAQTGTTLAHALGYPLTTEKGIKHGKATGMVLPFVMEVMKEEIPEKVD 306 (371)
T ss_dssp HHHH---HHTTCHH---HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHH---HHHcCHH---HHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhhhhcHHHHH
Confidence 5543 2334432 333 778999999999843 33337999999999999998876543321122
Q ss_pred HH-----HHHHHHHHHcCCCCCCCCCCCHH---HHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHH
Q 023154 212 IV-----KRVHNILQQAKLPTAPPDTMTVE---MFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 212 ~~-----~~i~~~l~~~glp~~l~~~~~~~---~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~ 283 (286)
.+ +++.++++++|+|+++. ++.+ ++.+.+..|++.. ..| ..++++++++++++.
T Consensus 307 ~~a~~l~~~l~~~l~~lglp~~~g--i~~~~~~~la~~a~~d~~~~---------~~p-------~~~~~~~i~~il~~~ 368 (371)
T 1o2d_A 307 TVNHIFGGSLLKFLKELGLYEKVA--VSSEELEKWVEKGSRAKHLK---------NTP-------GTFTPEKIRNIYREA 368 (371)
T ss_dssp HHHHHTTTCHHHHHHHTTCCCCCC--CCHHHHHHHHHHHTTCGGGG---------GSS-------SCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCC--CCHHHHHHHHHHHHhccccc---------CCC-------CCCCHHHHHHHHHHH
Confidence 33 55689999999997753 4444 4455555555432 112 468899999999876
Q ss_pred hh
Q 023154 284 CK 285 (286)
Q Consensus 284 ~~ 285 (286)
..
T Consensus 369 ~~ 370 (371)
T 1o2d_A 369 LG 370 (371)
T ss_dssp HC
T ss_pred hh
Confidence 53
No 16
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-37 Score=292.76 Aligned_cols=253 Identities=21% Similarity=0.243 Sum_probs=175.0
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc-
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF- 80 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~- 80 (286)
++++++++.+++ + .|+||||||||++|+||++| +++|+|+++|||| +++||++++++.|+.+.++++.+.+
T Consensus 133 ~~v~~~~~~~~~-~---~D~IIAvGGGSviD~AK~iA--~~~giP~I~IPTT--AgtgSevt~~avI~~~~~~~k~~~~~ 204 (450)
T 1ta9_A 133 VELDKLRKQCPD-D---TQVIIGVGGGKTMDSAKYIA--HSMNLPSIICPTT--ASSDAATSSLSVIYTPDGQFQKYSFY 204 (450)
T ss_dssp HHHHHHHTTSCT-T---CCEEEEEESHHHHHHHHHHH--HHTTCCEEEEESS--CSCSCTTCSEEEEC----CCCEEEEC
T ss_pred HHHHHHHHHHhh-C---CCEEEEeCCcHHHHHHHHHH--HhcCCCEEEEeCC--CccCcccCCceEEEeCCCceEEeccc
Confidence 467778887776 4 45999999999999999997 7799999999999 5669999999999988888777766
Q ss_pred -cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCC----HHHHHH-----HHHHHH----
Q 023154 81 -YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD----PRAFAY-----AIKRSC---- 146 (286)
Q Consensus 81 -~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~----~~~l~~-----~i~~~~---- 146 (286)
++|.+||+||+++.|+|++++++|++|+++|++ +.|+....... .+.+.. .+.+.+ ++....
T Consensus 205 ~~~P~~viiDp~ll~tlP~~~~aag~~DaL~h~~---E~~~s~~a~~~-~l~~~~~~~~a~~~a~~~~~~l~~~l~~a~~ 280 (450)
T 1ta9_A 205 PLNPNLIFIDTDVIVRAPVRFLISGIGDALSTWV---ETESVIRSNST-SFAGGVASIAGRYIARACKDTLEKYALSAIL 280 (450)
T ss_dssp SSCCSEEEEEHHHHHHSCHHHHHHHHHHHHHHHH---HHHHHHHTTCC-CTTSSBCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEchHHHccCCHHHHHHHHHHHHHHHH---HHHhcccCCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999998 55554321110 000000 111111 111111
Q ss_pred HhhhhhhccChh--------hhhhHHhhccchhHHHHhHhcc----C-CCCCChHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 023154 147 ENKAEVVSLDEK--------ESGLRATLNLGHTFGHAIETGF----G-YGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIV 213 (286)
Q Consensus 147 ~~~~~~v~~d~~--------~~g~r~~l~~GHt~~Hale~~~----~-~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~ 213 (286)
..+.....++.. ..|+ .++|+||+++|+||... + +.+++||++||+|+++++.++ ..+.+.+
T Consensus 281 ~~k~~~~~ear~~m~~As~~laG~-a~~n~G~~~~Hai~h~l~~~~~~~~~i~HG~avAig~la~~~l~----~~~~~~i 355 (450)
T 1ta9_A 281 SNTRGVCTEAFENVVEANTLMSGL-GFENGGLAAAHAIHNGMTAIHGPVHRLMHGEKVAYGTLVQVVLE----DWPLEDF 355 (450)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHH-HHHSSCCCHHHHHHHHHGGGCGGGGGSCHHHHHHHHHHHHHHHT----TCCHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHHhhH-HHhcCCchHHHHHhHHHhccccCcCCCCchHhhHHHHHHHHHhc----cCCHHHH
Confidence 112222333332 3566 67899999999998752 1 236999999999999887663 2467789
Q ss_pred HHHHHHHHHcCCCCCCCCC-CC---HHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHH
Q 023154 214 KRVHNILQQAKLPTAPPDT-MT---VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 214 ~~i~~~l~~~glp~~l~~~-~~---~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~ 283 (286)
+++.+|++++|+|+++++. ++ ++++ +.+.+ +...+. .. +|.. -.+++.+++++++++.
T Consensus 356 ~~i~~l~~~lglP~~L~elgi~~~~~~~l-~~~a~--~a~~~~------~~-~~~~--p~~~t~edi~~il~~a 417 (450)
T 1ta9_A 356 NNLASFMAKCHLPITLEELGIPNVTDEEL-LMVGR--ATLRPD------ES-IHNM--SKKFNPSQIADAIKAV 417 (450)
T ss_dssp HHHHHHHHHTTCCCSHHHHTCTTCCHHHH-HHHHH--HHTCTT------SG-GGGS--SSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHcCCCCCcHHHH-HHHHH--HHhhCc------cc-ccCC--CCCCCHHHHHHHHHHH
Confidence 9999999999999998753 54 5554 43333 222111 11 3331 1578999999999754
No 17
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=100.00 E-value=7.2e-35 Score=273.18 Aligned_cols=250 Identities=15% Similarity=0.165 Sum_probs=180.2
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh----------------hcCCcEEEeccchhhccccCcCcc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGK 65 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~----------------~~gip~i~VPTTl~~~~das~g~k 65 (286)
++++++++.++++++| +||||||||++|+||++|..+ ++++|+++||||+++ ||.+++.
T Consensus 75 ~~v~~~~~~~~~~~~D---~IIavGGGsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagt--gSe~t~~ 149 (383)
T 3ox4_A 75 TAVLEGLKILKDNNSD---FVISLGGGSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTTAGT--ASEMTRF 149 (383)
T ss_dssp HHHHHHHHHHHHHTCS---EEEEEESHHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECSSSC--CTTTCSE
T ss_pred HHHHHHHHHHHhcCcC---EEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCCCCc--hhhcCCe
Confidence 6899999999999887 999999999999999999987 679999999999876 6888887
Q ss_pred eeeecCC--cccccc-cccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHH
Q 023154 66 TGINHRL--GKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAI 142 (286)
Q Consensus 66 ~~i~~~~--~k~~~g-~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i 142 (286)
+.++.+. .|+.+. .+++|+++|+||+++.|+|++++++|++|+++|++ |.|++.... .+ .+.+.+..
T Consensus 150 avi~~~~~~~K~~i~~~~~~P~~~i~Dp~l~~tlP~~~~aag~~Dal~ha~---Eay~s~~~~---~~----td~~a~~a 219 (383)
T 3ox4_A 150 CIITDEVRHVKMAIVDRHVTPMVSVNDPLLMVGMPKGLTAATGMDALTHAF---EAYSSTAAT---PI----TDACALKA 219 (383)
T ss_dssp EEEEETTTTEEEEEECGGGSCSEEEECGGGTTTCCHHHHHHHHHHHHHHHH---HHHHCTTCC---HH----HHHHHHHH
T ss_pred EEEEECCCCeEEeecCCCccceEEEECcHHhcCCCHHHHHHHHHHHHHHHH---HHHhcCCCC---HH----HHHHHHHH
Confidence 7777653 355443 67899999999999999999999999999999998 555431111 11 23333333
Q ss_pred HHHHHhhhhhhccChhhhhhHH------------hh----ccchhHHHHhHhccCCCCCChHHHHHHHHHHHHH------
Q 023154 143 KRSCENKAEVVSLDEKESGLRA------------TL----NLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------ 200 (286)
Q Consensus 143 ~~~~~~~~~~v~~d~~~~g~r~------------~l----~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~------ 200 (286)
.+.+....+.+.+|+.+...|. +. +..|.++|+|... | +++||+++|+.+|..++
T Consensus 220 i~~i~~~l~~a~~~~~d~~ar~~m~~as~laG~a~~~~g~g~~Hai~h~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~~ 296 (383)
T 3ox4_A 220 ASMIAKNLKTACDNGKDMPAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGY--Y-NLPHGVCNAVLLPHVLAYNASVV 296 (383)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--S-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcccchhHHHhhhHHhcC--c-CCChHHHHHHHHHHHHHHHHHhh
Confidence 3333333344445555544442 11 2339999999875 4 79999999999887654
Q ss_pred ------HHHHcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcc
Q 023154 201 ------MSYRLGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGN 264 (286)
Q Consensus 201 ------l~~~~g~~----~-----~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~ 264 (286)
+++.+|.- + .+.++++.+|++++|+|+++.+. ++++++ +.|...- ..++. + .++
T Consensus 297 ~~~~~~la~~~g~~~~~~~~~~~a~~~i~~~~~l~~~lglP~~L~~~gi~~~~i-~~ia~~a-~~~~~----~----~~n 366 (383)
T 3ox4_A 297 AGRLKDVGVAMGLDIANLGDKEGAEATIQAVRDLAASIGIPANLTELGAKKEDV-PLLADHA-LKDAC----A----LTN 366 (383)
T ss_dssp HHHHHHHHHHTTCSCTTSCHHHHHHHHHHHHHHHHHHTTCCSSSTTTTCCGGGH-HHHHHHH-TTSGG----G----GGC
T ss_pred HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH-HHHHHHH-Hhccc----c----cCC
Confidence 33445542 2 23478999999999999999986 776664 4454422 11111 0 122
Q ss_pred eEEcCCCCHHHHHHHHHH
Q 023154 265 CVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 265 ~~~~~~v~~~~~~~~~~~ 282 (286)
. ..++.+++++++++
T Consensus 367 p---~~~t~~di~~i~~~ 381 (383)
T 3ox4_A 367 P---RQGDQKEVEELFLS 381 (383)
T ss_dssp S---SCCCHHHHHHHHHH
T ss_pred C---CCCCHHHHHHHHHH
Confidence 2 57899999999875
No 18
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=100.00 E-value=1.2e-34 Score=269.19 Aligned_cols=247 Identities=20% Similarity=0.173 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccc-ccc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLI-GAF 80 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~-g~~ 80 (286)
++++++++.++++++| +||||||||++|+||++|. ++++|+++||||+ + +|.+++...++..+.|+.+ +.+
T Consensus 76 ~~v~~~~~~~~~~~~D---~IIavGGGsviD~aK~iA~--~~~~p~i~IPTT~-t--gSevt~~~v~~~~~~K~~~~~~~ 147 (358)
T 3jzd_A 76 ESARDATARAREAGAD---CAVAVGGGSTTGLGKAIAL--ETGMPIVAIPTTY-A--GSEVTPVYGLTEAGTKRTGRDPR 147 (358)
T ss_dssp HHHHHHHHHHHHHTCS---EEEEEESHHHHHHHHHHHH--HHCCCEEEEECSS-C--CGGGCSEEEEEETTEEEEEECGG
T ss_pred HHHHHHHHHhhccCCC---EEEEeCCcHHHHHHHHHHh--ccCCCEEEEeCCc-c--ccccccceEEcCCCeeEeeccCC
Confidence 6789999999999887 9999999999999999975 6899999999996 5 5777764433434457765 567
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhh
Q 023154 81 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES 160 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~ 160 (286)
++|+++|+||+++.|+|++++++|++|+++|++ |.|++.... .+ .+.+.+...+.+....+.+.+|+.+.
T Consensus 148 ~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---Eay~s~~~~---~~----td~~a~~ai~~i~~~l~~a~~~~~d~ 217 (358)
T 3jzd_A 148 VLPRTVIYDPALTVGLPRGLSVTSALNAIAHAA---EGLYARDAN---PV----MSLMAEEGIRALAAGIPAVFNDPADL 217 (358)
T ss_dssp GSCSEEEECGGGGTTSCHHHHHHHHHHHHHHHH---HHTTCTTCC---HH----HHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cCCcEEEEChHHHcCCCHHHHHHHHHHHHHHHH---HHHhcCCCC---HH----HHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 899999999999999999999999999999998 444432111 11 23333333333333344455566555
Q ss_pred hhHH------------hhc----cchhHHHHhHhccCCCCCChHHHHHHHHHHHHH------------HHHHcCCCCHHH
Q 023154 161 GLRA------------TLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------------MSYRLGWIDDSI 212 (286)
Q Consensus 161 g~r~------------~l~----~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~------------l~~~~g~~~~~~ 212 (286)
..|. +.| ..|.++|+|... | +++||+++|+.+|.+++ +++.+|.-+.+.
T Consensus 218 ~aR~~m~~as~laG~a~~~~g~g~~Hai~h~lg~~--~-~i~HG~~~aillp~v~~~~~~~~~~~~~~~a~~lg~~~~~~ 294 (358)
T 3jzd_A 218 DARSQCLYGAWLCGTVLGGVGMALHHKLCHTLGGS--F-NLPHAETHTIVLPHALAYNAAAVPEAMARIRRATGAGEQSA 294 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTCTTSCH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhcc--c-CCchhHhHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCchHH
Confidence 4443 112 339999999876 4 79999999999987654 344456533235
Q ss_pred HHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHHh
Q 023154 213 VKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC 284 (286)
Q Consensus 213 ~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~~ 284 (286)
++++.+|++++|+|+++++. ++++++ +.+.+.- ..+. .++. +.++.+++++++++..
T Consensus 295 ~~~i~~l~~~lglP~~L~e~Gi~~~~i-~~~a~~a-~~~~----------~~np---~~~~~~di~~i~~~a~ 352 (358)
T 3jzd_A 295 AATLFDLAQRHGAPVALRDIGMREEDL-DRAADIA-LASP----------YWNP---RPIEREPIRALLQAAY 352 (358)
T ss_dssp HHHHHHHHHHTTCCCCGGGGTCCGGGH-HHHHHHH-TTSC----------CCCS---SCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHcCCCHHHH-HHHHHHH-Hhcc----------cCCC---CCCCHHHHHHHHHHHh
Confidence 78999999999999999885 777765 5554422 1111 2333 5789999999998643
No 19
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=100.00 E-value=1.6e-34 Score=270.78 Aligned_cols=255 Identities=18% Similarity=0.190 Sum_probs=174.4
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc-
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF- 80 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~- 80 (286)
+++.++++.+++.++| +||||||||++|+||++| +++++|+++|||| +++||.+++++.|+.+.+|++.+.+
T Consensus 93 ~~v~~~~~~~~~~~~d---~IIavGGGs~~D~AK~iA--~~~~~p~i~IPTT--agtgSevt~~avi~~~~~~~k~~~~~ 165 (387)
T 3uhj_A 93 SEIERVRKVAIEHGSD---ILVGVGGGKTADTAKIVA--IDTGARIVIAPTI--ASTDAPCSAIAVRYTEHGVYEEALRL 165 (387)
T ss_dssp HHHHHHHHHHHHHTCS---EEEEESSHHHHHHHHHHH--HHTTCEEEECCSS--CCCSTTTSSEEEEECTTSCEEEEEEC
T ss_pred HHHHHHHHHHhhcCCC---EEEEeCCcHHHHHHHHHH--HhcCCCEEEecCc--ccCCcccCCeEEEEcCCCceEeeeec
Confidence 5789999999999887 999999999999999996 6799999999999 4558999999999988777766544
Q ss_pred -cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHh-----hcCCHHHHHHHHHHHHHhhhh---
Q 023154 81 -YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKL-----MARDPRAFAYAIKRSCENKAE--- 151 (286)
Q Consensus 81 -~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~-----~~~~~~~l~~~i~~~~~~~~~--- 151 (286)
++|..+|+||+++.|+|++++++|++|+++|++ |.|+.......... .......+.+...+.+....+
T Consensus 166 ~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---Eay~s~~a~~~~~~~~~~~~~~~a~~~a~~~~~~l~~~l~~a~ 242 (387)
T 3uhj_A 166 PRNPDAVVVDSALVAAAPARFLVAGIGDALSTWF---EARSNIESRTDNYVAGGFPATEAGMAIARHCQDVLTRDAVKAK 242 (387)
T ss_dssp SCCCSEEEECHHHHHTSCHHHHHHHHHHHHHHHH---HHHHHHHHTCCCSSTTCCCBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEChHHHhhCCHHHHHHHHHHHHHHHH---HHHHHHhcCCccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999 65554322210000 000001122222222211111
Q ss_pred hhccChhhhhhHH-------------h----hccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 023154 152 VVSLDEKESGLRA-------------T----LNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVK 214 (286)
Q Consensus 152 ~v~~d~~~~g~r~-------------~----l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~ 214 (286)
...+|+.+...|. + ++..|.++|+|....+..+++||++||++.+.++.+. + ...+.++
T Consensus 243 ~a~~~~~~~~Ar~~m~~as~~laG~af~~ag~g~~Hai~h~L~~~~~~~~i~HG~~~a~~~la~~~~~---~-~~~~~i~ 318 (387)
T 3uhj_A 243 IAVEAGLLTPAVENIIEANTLLSGLGFENCGCSAAHGIHDGLTVLEEVHGYFHGEKVAFGTLCLLMLE---N-RDRAEIE 318 (387)
T ss_dssp HHHHTTCCCHHHHHHHHHHTHHHHHHHHHHCCCHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHHT---T-CCHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhhhhhhccCcHHHHHhhhhhhcccCcCCCCchHHHHHHHHHHHHhC---C-CcHHHHH
Confidence 1112222211111 1 2234888888876533237999999999988776542 1 3467899
Q ss_pred HHHHHHHHcCCCCCCCCC-CC---HHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHH
Q 023154 215 RVHNILQQAKLPTAPPDT-MT---VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 215 ~i~~~l~~~glp~~l~~~-~~---~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~ 282 (286)
++.+|++++|+|+++.+. ++ +++ ++.|.+.- ..++.. +.+.| ..++.+++++++++
T Consensus 319 ~i~~l~~~lglP~~L~elGi~~~~~~~-l~~ia~~a-~~~~~~---~~n~P-------~~~t~e~i~~il~~ 378 (387)
T 3uhj_A 319 AMIRFCRSVGLPTKLADLGIVDDVPAK-IGRVAEAA-CRPGNI---IYATP-------VTITVPAVRDAILA 378 (387)
T ss_dssp HHHHHHHHHTCCCSGGGGTCCSSHHHH-HHHHHHHH-TSTTCG---GGGSS-------SCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHcCCCCCcHHH-HHHHHHHH-Hcccch---hhcCC-------CCCCHHHHHHHHHH
Confidence 999999999999999875 66 455 45555422 111110 01112 47889999999864
No 20
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=3.7e-34 Score=265.52 Aligned_cols=242 Identities=17% Similarity=0.127 Sum_probs=174.5
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecC-Ccccc-ccc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHR-LGKNL-IGA 79 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~-~~k~~-~g~ 79 (286)
++++++++.++++++| +||||||||++|+||++|. ++++|+++||||+ + +|.+++ .+++.. +.|+. .+.
T Consensus 74 ~~v~~~~~~~~~~~~D---~IIavGGGs~iD~aK~iA~--~~~~p~i~IPTTa-t--gSe~t~-~~v~~~~~~K~~~~~~ 144 (353)
T 3hl0_A 74 EVTKTAVEAYRAAGAD---CVVSLGGGSTTGLGKAIAL--RTDAAQIVIPTTY-A--GSEVTP-ILGQTENGVKTTMRGP 144 (353)
T ss_dssp HHHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHHH--HHCCEEEEEECSS-C--CGGGCC-EEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHhccCCC---EEEEeCCcHHHHHHHHHHh--ccCCCEEEEeCCc-h--hhhccC-ceEEcCCCeeEeeecC
Confidence 6789999999999887 9999999999999999975 6899999999998 5 677776 444443 34553 356
Q ss_pred ccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhh
Q 023154 80 FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKE 159 (286)
Q Consensus 80 ~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~ 159 (286)
+++|+++|+||+++.|+|++++++|++|+++|++ |.|++.... .+ .+.+.+...+.+....+.+.+|+.+
T Consensus 145 ~~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---Eay~s~~~~---~~----td~~a~~ai~~i~~~l~~a~~~~~d 214 (353)
T 3hl0_A 145 EILPEVVIYDAELTLGLPVAISMTSGLNAMAHAA---EALYARDRN---PI----ASMMAVEGLRAMIEALPVVRQAPHD 214 (353)
T ss_dssp TTSCSEEEECGGGGTTSCHHHHHHHHHHHHHHHH---HHTTCTTCC---HH----HHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CcCccEEEEChHHHcCCCHHHHHHHHHHHHHHHH---HHHhcCCCC---HH----HHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 7899999999999999999999999999999998 444431111 11 2333333333343334444456655
Q ss_pred hhhHH------------hhc----cchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHH------------HcCCCCHH
Q 023154 160 SGLRA------------TLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSY------------RLGWIDDS 211 (286)
Q Consensus 160 ~g~r~------------~l~----~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~------------~~g~~~~~ 211 (286)
...|. +.| ..|.++|+|... | +++||+++|+.++.++++.. .+|. +
T Consensus 215 ~~aR~~m~~as~laG~a~~~~g~g~~H~i~h~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~~~~~~~~~a~~lg~-~-- 288 (353)
T 3hl0_A 215 IGARETALYGAWLCGTVLGAVGMSLHHKLCHTLGGS--L-DLPHAETHAVLLPHTIAYVEEAAPNLLAPLAALVGG-R-- 288 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHTS-C--
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHhhHhhhc--c-CCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCc-H--
Confidence 55443 112 339999999886 4 79999999999987765432 2332 1
Q ss_pred HHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHH
Q 023154 212 IVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 212 ~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~ 283 (286)
.++++++|++++|+|+++++. ++++++ +.+.+.- ..+. .++. ..++.+++++++++.
T Consensus 289 ~~~~i~~l~~~lglP~~L~e~Gi~~~~i-~~~a~~a-~~~~----------~~np---~~~~~~di~~i~~~a 346 (353)
T 3hl0_A 289 AGAGLFDFAARLGAPSSLAALGVGADDL-DPMAELA-TANP----------YWCP---RPIEKTAIRDLLQRA 346 (353)
T ss_dssp HHHHHHHHHHHHTCCCCTGGGTCCGGGH-HHHHHHH-TTSC----------CCCS---SCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccHHhcCCCHHHH-HHHHHHH-Hhcc----------cCCC---CCCCHHHHHHHHHHH
Confidence 578999999999999999885 777765 4454422 1111 1233 578999999999864
No 21
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=100.00 E-value=6.1e-34 Score=264.89 Aligned_cols=245 Identities=15% Similarity=0.146 Sum_probs=175.1
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccc-ccc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLI-GAF 80 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~-g~~ 80 (286)
++++++++.++++++| +||||||||++|+||++|. ++++|+++||||+ + +|.+++...+...+.|+.+ +.+
T Consensus 75 ~~v~~~~~~~~~~~~D---~IIavGGGs~iD~aK~iA~--~~~~P~i~IPTTa-t--gSe~t~~avi~~~~~K~~~~~~~ 146 (364)
T 3iv7_A 75 EVAERARAVATDNEID---LLVCVGGGSTIGLAKAIAM--TTALPIVAIPTTY-A--GSEATNVWGLTEAARKTTGVDLK 146 (364)
T ss_dssp HHHHHHHHHHHHTTCC---EEEEEESHHHHHHHHHHHH--HHCCCEEEEECSS-S--CGGGCCEEEEEETTEEEEEECGG
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCcHHHHHHHHHHh--ccCCCEEEEcCCc-c--cccccCeeEecCCCeeEeccCCC
Confidence 6799999999999887 9999999999999999975 6899999999998 6 5777764444433446543 567
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhh
Q 023154 81 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES 160 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~ 160 (286)
+.|.++|+||+++.|+|++++++|++|+++|++ |.|++...+ .+ .+.+.+...+.+....+.+.+|+.+.
T Consensus 147 ~~P~~vi~Dp~l~~tlP~~~~aag~~Dal~ha~---Eay~s~~~~---~~----td~~a~~ai~~i~~~l~~a~~~~~d~ 216 (364)
T 3iv7_A 147 VLPETVIYDSELTMSLPVEMSVASGLNGLAHCI---DSLWGPNAD---PI----NAVLAAEGIRALNQGLPKIVANPHSI 216 (364)
T ss_dssp GSCSEEEECGGGGTTSCHHHHHHHHHHHHHHHH---HHTTCTTCC---HH----HHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cCceEEEEChHHHcCCCHHHHHHhHHHHHHHHH---HHHhcCCCC---HH----HHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 899999999999999999999999999999998 444321110 11 23333333333433344455566555
Q ss_pred hhHH------------h----hccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHH------------HHHcCCCCHHH
Q 023154 161 GLRA------------T----LNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SYRLGWIDDSI 212 (286)
Q Consensus 161 g~r~------------~----l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l------------~~~~g~~~~~~ 212 (286)
..|. + ++..|.++|+|... | +++||+++|+.++..+++ ++.+|.. +.
T Consensus 217 ~aR~~m~~As~laG~a~~~~g~g~~Hai~h~lg~~--~-~i~HG~~~aillp~v~~~~~~~~~~~~~~~a~~lg~~--~~ 291 (364)
T 3iv7_A 217 EGRDEALYGAYLAAVSFASAGSGLHHKICHTLGGT--F-NLPHAQTHATVLPYVLAFNAGDAPEAERRAAAAFGTD--TA 291 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHT--S-CCCHHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHTSS--SH
T ss_pred HHHHHHHHHHHHHhHHhhccCchHHHHHHhHhhhc--c-CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCc--hH
Confidence 5543 1 12349999999885 4 799999999998876643 3334432 35
Q ss_pred HHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHH
Q 023154 213 VKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 213 ~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~ 283 (286)
++++.+|++++|+|+++++. ++++++ +.+.+.-. . . . ..++. ..++.+++++++++.
T Consensus 292 ~~~i~~l~~~lglP~~L~e~Gi~~~~i-~~~a~~a~-~-~-------~-~~~np---~~~t~~di~~il~~a 349 (364)
T 3iv7_A 292 LEGLQRLRLSVNAPKRLSDYGFEASGI-AEAVDVTL-E-K-------V-PANNP---RPVTRENLSRLLEAA 349 (364)
T ss_dssp HHHHHHHHHHTTCCCCGGGGTCCGGGH-HHHHHHHH-T-T-------S-CTTCS---SCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHcCCCHHHH-HHHHHHHH-h-h-------c-ccCCC---CCCCHHHHHHHHHHH
Confidence 78999999999999999875 776665 44433211 1 1 0 12333 578999999999864
No 22
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=100.00 E-value=7.7e-32 Score=251.49 Aligned_cols=245 Identities=12% Similarity=0.083 Sum_probs=172.7
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh----------------hcCCcEEEeccchhhccccCcCcc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGK 65 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~----------------~~gip~i~VPTTl~~~~das~g~k 65 (286)
++++++++.+++++.+|.|+||||||||++|+||++|..+ .+++|+++||||+++ ||.+++.
T Consensus 93 ~~v~~~~~~~~~~~~~~~D~IIavGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagt--gSevt~~ 170 (375)
T 3rf7_A 93 VQVDELTAQVKAFNTKLPVSVVGLGGGSTMDLAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPTVSGT--GAEASRT 170 (375)
T ss_dssp HHHHHHHHHHHHHCSSCCSEEEEEESHHHHHHHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEESSCSS--CTTTCSC
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcCCCcc--chhhCCe
Confidence 6789999999999987888999999999999999999876 468999999999765 7888888
Q ss_pred eeeecCCccccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHH
Q 023154 66 TGINHRLGKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKR 144 (286)
Q Consensus 66 ~~i~~~~~k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~ 144 (286)
+.|+.++.|..+ +.+..|+++|+||+++.|+|++++++|..|++.|++ |.|+..... .+ ++.+.+...+
T Consensus 171 avit~~~~K~~i~~~~~~P~~vi~Dp~l~~tlP~~~~aa~g~Dal~Hai---Eay~s~~~~---~~----sd~~a~~ai~ 240 (375)
T 3rf7_A 171 AVLCGPVRKLGLNSDYTVFDQIIMDSELIAGVPTDQWFYTGMDCFIHCV---ESLQGTYLN---EF----AKAFAEKSMD 240 (375)
T ss_dssp CEEECSSCEEEEESGGGSCSEEEECGGGGTTCCHHHHHHHHHHHHHHHH---HHHHSTTCC---HH----HHHHHHHHHH
T ss_pred EEEEeCCCeEEecccccCCCEEEEcHHHHcCCCHHHHHHHHHHHHHHHH---HHHhccCCC---HH----HHHHHHHHHH
Confidence 888777667654 456899999999999999999999999999999998 554321100 11 2222222222
Q ss_pred HHHhhhhhhccChhhhhhHH------------hh----ccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCC
Q 023154 145 SCENKAEVVSLDEKESGLRA------------TL----NLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWI 208 (286)
Q Consensus 145 ~~~~~~~~v~~d~~~~g~r~------------~l----~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~ 208 (286)
.|... +.++ +...|. +. +..|.++|+|... + +++||+++|+.+++..++
T Consensus 241 li~~~---l~~~--~~~ar~~m~~as~laG~a~~~~g~g~~Hai~h~L~~~--~-~i~HG~~~aillp~v~~~------- 305 (375)
T 3rf7_A 241 LCREV---YLDD--HPEKDDKLMMASYMGGMSIAYSQVGACHAVSYGLGYV--L-GYHHGIGNCLAFDVLEEF------- 305 (375)
T ss_dssp HHHHH---HTSC--CTTHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHH--H-CCCHHHHHHHHHTTCTTT-------
T ss_pred HHHHH---Hhhc--CHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHHHhc--c-CCCchhhHHHHHHHHHHh-------
Confidence 22211 1122 111221 11 2339999999886 3 689999999888765443
Q ss_pred CHHHHHHHHHHHH--HcCCCCCCCCCCCHHHHHHHHHhchhccCCeeE--EEeecCCCcceEEcCCCCHHHHHHHHHH
Q 023154 209 DDSIVKRVHNILQ--QAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLR--LILLKGPLGNCVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 209 ~~~~~~~i~~~l~--~~glp~~l~~~~~~~~~~~~l~~dkk~~~~~~~--~~l~~~~iG~~~~~~~v~~~~~~~~~~~ 282 (286)
..+..+++.++.+ ++|+|+++.+.+++|++ +.|...- ....++. -...+. . +.++++++++++++
T Consensus 306 ~~~~~~~~~~~~~~~~lglP~~L~~gi~~e~l-~~~a~~A-~~~~~l~~~~~~~n~----P---r~~t~edi~~i~~~ 374 (375)
T 3rf7_A 306 YPEGVAEFRKMMEIHNITLPKNICKDLPDETI-AKMVAVT-KSMGPLWDNVYGKGW----E---EKVTDEMLTKLFRR 374 (375)
T ss_dssp SHHHHHHHHHHHHHTTCCCCCCSSTTCCHHHH-HHHHHHH-HTCHHHHHHHHCTTC----T---TTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCchhhCCCHHHH-HHHHHHH-HhhhhccccCCCCCC----C---CCCCHHHHHHHHhh
Confidence 2456899999998 69999999876787775 4444422 1111100 000111 2 57899999999986
No 23
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=88.92 E-value=0.53 Score=38.36 Aligned_cols=46 Identities=22% Similarity=0.364 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
+.+.++.+.+.+.+++ +||++.|+ ..-+.+.+|+ ..-+|+|.|||.
T Consensus 49 ~~~~~~~~~a~~~g~~---ViIa~AG~-aa~LpgvvA~--~t~~PVIgVP~~ 94 (174)
T 3lp6_A 49 EAMFSYARGAAARGLE---VIIAGAGG-AAHLPGMVAA--ATPLPVIGVPVP 94 (174)
T ss_dssp HHHHHHHHHHHHHTCC---EEEEEEES-SCCHHHHHHH--HCSSCEEEEEEC
T ss_pred HHHHHHHHHHHhCCCC---EEEEecCc-hhhhHHHHHh--ccCCCEEEeeCC
Confidence 3456667777778887 88888877 4668899976 378999999986
No 24
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=88.62 E-value=0.52 Score=42.33 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhh
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMA 56 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~ 56 (286)
...++++.++++++| .++.+||-=..+.|...+ ..++|++-||-|..+
T Consensus 82 ~~~~~~~~l~~~~Id---~LvvIGGdgS~~~a~~L~---~~~i~vvgiPkTIDN 129 (320)
T 1pfk_A 82 IRAVAIENLKKRGID---ALVVIGGDGSYMGAMRLT---EMGFPCIGLPGTIDN 129 (320)
T ss_dssp HHHHHHHHHHHTTCC---EEEEEECHHHHHHHHHHH---HTTCCEEEEEBCTTC
T ss_pred HHHHHHHHHHHcCCC---EEEEECCCchHHHHHHHH---hhCCCEEEEeccccC
Confidence 467899999999998 999999999999888875 359999999999854
No 25
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=87.34 E-value=0.57 Score=42.04 Aligned_cols=48 Identities=17% Similarity=0.179 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhh
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMA 56 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~ 56 (286)
...++++.++++++| .++.+||-=..+.|..++ ..++|++-||-|..+
T Consensus 81 ~~~~~~~~l~~~~Id---~LvvIGGdgS~~~a~~L~---~~~i~vvgiPkTIDN 128 (319)
T 1zxx_A 81 GQLAGIEQLKKHGID---AVVVIGGDGSYHGALQLT---RHGFNSIGLPGTIDN 128 (319)
T ss_dssp HHHHHHHHHHHTTCC---EEEEEECHHHHHHHHHHH---HTTCCEEEEEEETTC
T ss_pred HHHHHHHHHHHhCCC---EEEEECCchHHHHHHHHH---HhCCCEEEEeecccC
Confidence 467899999999999 999999999999888885 359999999999854
No 26
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=86.94 E-value=0.6 Score=41.89 Aligned_cols=48 Identities=15% Similarity=0.114 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhh
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMA 56 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~ 56 (286)
..+++++.+++.++| .++.+||--.++.|...+ ..++|++-||-|..+
T Consensus 81 ~~~~~~~~l~~~~Id---~L~~IGGdgS~~~a~~l~---~~~i~vigiPkTIDN 128 (319)
T 4a3s_A 81 GREKGIANLKKLGIE---GLVVIGGDGSYMGAKKLT---EHGFPCVGVPGTIDN 128 (319)
T ss_dssp HHHHHHHHHHHHTCC---EEEEEECTTHHHHHHHHH---HTTCCEEEEEEETTC
T ss_pred HHHHHHHHHHHcCCC---EEEEeCCcHHHHHHHHHh---ccCCcEEEeeccccC
Confidence 467889999999999 999999999999998774 469999999999764
No 27
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=86.63 E-value=0.46 Score=38.39 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=30.7
Q ss_pred HHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 5 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 5 ~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
.+..+.+.+.+++ +||++.|+. .-+.+.+|+ ..-+|+|.|||.
T Consensus 50 ~~~~~~~~~~g~~---ViIa~AG~a-a~LpgvvA~--~t~~PVIgVP~~ 92 (166)
T 3oow_A 50 FDYAETAKERGLK---VIIAGAGGA-AHLPGMVAA--KTTLPVLGVPVK 92 (166)
T ss_dssp HHHHHHTTTTTCC---EEEEEECSS-CCHHHHHHH--TCSSCEEEEECC
T ss_pred HHHHHHHHhCCCc---EEEEECCcc-hhhHHHHHh--ccCCCEEEeecC
Confidence 3344444445554 899888874 668899976 468999999986
No 28
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=84.71 E-value=0.72 Score=42.97 Aligned_cols=64 Identities=19% Similarity=0.196 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh-hc--CCcEEEeccchhh---ccccCcCcceee
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LR--GVSFIQIPTTVMA---QVDSSVGGKTGI 68 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~-~~--gip~i~VPTTl~~---~~das~g~k~~i 68 (286)
+...++++.++++++| .++.+||-=.++.|..++-.. .+ ++|+|-||-|.-+ .+|-++|--|++
T Consensus 91 ~~~~~~~~~l~~~~Id---~Lv~IGGdgS~~~A~~L~~~~~~~g~~i~vIGiPkTIDNDl~~tD~t~GFdTA~ 160 (419)
T 3hno_A 91 REYERLIEVFKAHDIG---YFFYNGGGDSADTCLKVSQLSGTLGYPIQAIHVPKTVDNDLPITDCCPGFGSVA 160 (419)
T ss_dssp HHHHHHHHHHHHTTEE---EEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEECCTTCCCSSSSSCTTHHHHH
T ss_pred HHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHhCCCccEEEecccccCCCcCCCCCCCchHHH
Confidence 3567899999999998 999999988888887775322 23 5999999999853 334444444443
No 29
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=82.88 E-value=1.2 Score=42.98 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh---hcCCcEEEeccchhh
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTVMA 56 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~---~~gip~i~VPTTl~~ 56 (286)
...++++.++++++| .+|.|||-=..+.|..++-.+ ..++|+|-||-|..+
T Consensus 154 ~~~~~~~~l~~~~Id---~LvvIGGdgS~~~A~~L~e~~~~~~~~i~vIGiPkTIDN 207 (555)
T 2f48_A 154 HYNKALFVAKENNLN---AIIIIGGDDSNTNAAILAEYFKKNGENIQVIGVPKTIDA 207 (555)
T ss_dssp HHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHHHHHHHTTCCCEEEEEEEETTC
T ss_pred HHHHHHHHHHHcCCC---EEEEeCCCcHHHHHHHHHHHHHHhCCCCcEEEeccccCC
Confidence 467899999999999 999999999898888876432 238999999999875
No 30
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=81.81 E-value=1.7 Score=37.70 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHcCC----CCCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023154 3 TLMKVFDKAIESRL----DRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 3 ~v~~~~~~~~~~~~----~r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
.+.++.+.+.+.|+ +..|+||++|| |++..+++.++. ...++|++-||+
T Consensus 16 ~~~~l~~~l~~~g~~v~~~~~D~vv~lGGDGT~l~aa~~~~~-~~~~~PilGIn~ 69 (272)
T 2i2c_A 16 LRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEE-RLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHHHHTTSSCEECSSSCSEEEEEESHHHHHHHHHHTGG-GTTTCEEEEEES
T ss_pred HHHHHHHHHHHCCCEeCCCCCCEEEEEcCcHHHHHHHHHHhh-cCCCCCEEEEeC
Confidence 35567777777775 24689999987 999999887731 113899999986
No 31
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=80.68 E-value=1.6 Score=43.61 Aligned_cols=64 Identities=22% Similarity=0.243 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHH---hh-cCCcEEEeccchhh---ccccCcCcceeee
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---YL-RGVSFIQIPTTVMA---QVDSSVGGKTGIN 69 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~---~~-~gip~i~VPTTl~~---~~das~g~k~~i~ 69 (286)
...++.+.++++++| .+|.+||--..+.|..++.. |. .++|++-||-|..+ .+|-++|--|++|
T Consensus 477 ~~~~~~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gTD~TiGfdTA~~ 547 (762)
T 3o8l_A 477 SFEQISANITKFNIQ---GLVIIGGFEAYTGGLELMEGRKQFDELCIPFVVIPATVSNNVPGSDFSVGADTALN 547 (762)
T ss_dssp GHHHHHHHHHHTTCC---CEEEEESHHHHHHHHHHHHHHHHCSTTCSCEEEEEBCTTCCCTTCSCCBTHHHHHH
T ss_pred HHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHhccccCCCEEeeccccCCCCCCCcCCCChHHHHH
Confidence 567899999999999 99999998777877766432 22 48999999999863 3355555555544
No 32
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=78.22 E-value=2.4 Score=43.44 Aligned_cols=51 Identities=16% Similarity=0.099 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh----hcCCcEEEeccchhh
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----LRGVSFIQIPTTVMA 56 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~----~~gip~i~VPTTl~~ 56 (286)
...++.+.++++++| .+|.|||--..+.|...+... ..++|+|.||-|..+
T Consensus 676 ~~~~i~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~y~~~~I~vVGIPkTIDN 730 (989)
T 3opy_A 676 DMGTVAYYFQQYKFD---GLIIIGGFEAFTALYELDAARAQYPIFNIPMCCLPATVSN 730 (989)
T ss_dssp GHHHHHHHHHHHTCS---EEEEEESHHHHHHHHHHHHHTTTCGGGCSCEEEEEBCSSC
T ss_pred hHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHhhCCCcCCcEEeccccccC
Confidence 467889999999999 999999977778887775421 138999999999864
No 33
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=77.10 E-value=1.6 Score=35.71 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 5 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 5 ~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
.++.+.+.+.|++ +||++-|+ ..-+.+.+|+. .-+|+|.||+.
T Consensus 66 ~~~~~~a~~~g~~---ViIa~AG~-aa~LpgvvA~~--t~~PVIgVP~~ 108 (182)
T 1u11_A 66 ADYARTAAERGLN---VIIAGAGG-AAHLPGMCAAW--TRLPVLGVPVE 108 (182)
T ss_dssp HHHHHHTTTTTCC---EEEEEEES-SCCHHHHHHHH--CSSCEEEEEEC
T ss_pred HHHHHHHHhCCCc---EEEEecCc-hhhhHHHHHhc--cCCCEEEeeCC
Confidence 3334444445565 88888877 56789999764 78999999986
No 34
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=76.01 E-value=2.4 Score=40.16 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh-h--cCCcEEEeccchhh---ccccCcCcceeee
Q 023154 4 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-L--RGVSFIQIPTTVMA---QVDSSVGGKTGIN 69 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~-~--~gip~i~VPTTl~~---~~das~g~k~~i~ 69 (286)
..++++.++++++| .++.|||-=..+.|..++-.. . .++|+|-||-|..+ .+|-|+|--|+++
T Consensus 178 ~~~i~~~l~~~~Id---~LvvIGGdgS~~~A~~L~e~~~~~g~~i~vVGIPkTIDNDl~gTD~T~GFdTAv~ 246 (487)
T 2hig_A 178 PKEMVDTLERLGVN---ILFTVGGDGTQRGALVISQEAKRRGVDISVFGVPKTIDNDLSFSHRTFGFQTAVE 246 (487)
T ss_dssp HHHHHHHHHHHTCS---EEEEEECHHHHHHHHHHHHHHHHHTCCCEEEEEECCTTSSCCCSSCCTTHHHHHH
T ss_pred HHHHHHHHHHcCCC---EEEEeCCCchHHHHHHHHHHHHHhCCCceEEeccccccCCCCCCCCCCCHHHHHH
Confidence 35889999999999 999999999999887775321 2 35899999999864 3355565555544
No 35
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=75.44 E-value=2.3 Score=34.36 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
.+.++.+.+.+.+++ +||++.|++ .-+.+.+|+ ..-+|+|.|||.
T Consensus 49 ~~~~~~~~a~~~g~~---ViIa~AG~a-a~LpgvvA~--~t~~PVIgVP~~ 93 (169)
T 3trh_A 49 ETVEFVENADNRGCA---VFIAAAGLA-AHLAGTIAA--HTLKPVIGVPMA 93 (169)
T ss_dssp HHHHHHHHHHHTTEE---EEEEEECSS-CCHHHHHHH--TCSSCEEEEECC
T ss_pred HHHHHHHHHHhCCCc---EEEEECChh-hhhHHHHHh--cCCCCEEEeecC
Confidence 455666666677776 888888874 668899976 468999999986
No 36
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=74.33 E-value=3.2 Score=41.61 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh----hcCCcEEEeccchhh
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----LRGVSFIQIPTTVMA 56 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~----~~gip~i~VPTTl~~ 56 (286)
...++.+.++++++| .+|.|||--..+.|...+-.. ..++|+|-||-|..+
T Consensus 471 ~~~~~~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vIgiPkTIDN 525 (787)
T 3o8o_A 471 DLGTIAYYFQKNKLD---GLIILGGFEGFRSLKQLRDGRTQHPIFNIPMCLIPATVSN 525 (787)
T ss_dssp CHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHHHHTTTCGGGGSCEEEEEBCTTC
T ss_pred hHHHHHHHHHHhCCC---EEEEeCCchHHHHHHHHHHHHHhcCccCCceeeccccccc
Confidence 356788999999999 999999977778777775321 138999999999864
No 37
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=72.12 E-value=3.8 Score=41.88 Aligned_cols=51 Identities=12% Similarity=0.021 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh----hcCCcEEEeccchhh
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----LRGVSFIQIPTTVMA 56 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~----~~gip~i~VPTTl~~ 56 (286)
...++.+.++++++| .+|.|||--..+.|...+-.. ..++|+|-||-|..+
T Consensus 650 ~~~~i~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vVGIPkTIDN 704 (941)
T 3opy_B 650 DIGMIAYFFEKYGFD---GLILVGGFEAFISLHQLERARINYPSLRIPLVLIPATISN 704 (941)
T ss_dssp CHHHHHHHHHHTTCS---EEEEEESHHHHHHHHHHHHGGGTCGGGCSCEEEEEBCSSC
T ss_pred hHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeeeccccC
Confidence 356788999999999 999999977777777775321 138999999999764
No 38
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=70.83 E-value=3.4 Score=33.84 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=31.9
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccch
Q 023154 4 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 54 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl 54 (286)
+.++.+.+.+.+++ +||++.|+ ..-+.+.+|+. .-.|+|.|||..
T Consensus 57 l~~~~~~a~~~g~~---ViIa~AG~-aa~LpgvvA~~--t~~PVIgVP~~~ 101 (183)
T 1o4v_A 57 MFEYAKNAEERGIE---VIIAGAGG-AAHLPGMVASI--THLPVIGVPVKT 101 (183)
T ss_dssp HHHHHHHTTTTTCC---EEEEEEES-SCCHHHHHHHH--CSSCEEEEEECC
T ss_pred HHHHHHHHHhCCCc---EEEEecCc-ccccHHHHHhc--cCCCEEEeeCCC
Confidence 33444444445565 88888877 56789999764 789999999863
No 39
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=70.40 E-value=2.8 Score=41.96 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHH---hh-cCCcEEEeccchhh
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---YL-RGVSFIQIPTTVMA 56 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~---~~-~gip~i~VPTTl~~ 56 (286)
...++.+.++++++| .+|.|||--..+.+...+.. |. .++|++-||-|..+
T Consensus 472 ~~~~~~~~l~~~~Id---~LvvIGGdgS~~~a~~L~~~~~~~~~~~i~vvgiPkTIDN 526 (766)
T 3o8o_B 472 DLGMIAYYFQKYEFD---GLIIVGGFEAFESLHQLERARESYPAFRIPMVLIPATLSN 526 (766)
T ss_dssp CHHHHHHHHHHHTCS---EEEEEESHHHHHHHHHHHTTTTTCGGGCSCCCEEEBCTTC
T ss_pred hHHHHHHHHHHhCCC---EEEEeCCchHHHHHHHHHHHHHhcCccCCcEEeecccccc
Confidence 356888999999999 99999997777777776531 11 48999999999864
No 40
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=69.88 E-value=3.7 Score=32.98 Aligned_cols=44 Identities=23% Similarity=0.424 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 4 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
+.++.+.+.+.+++ +||++.|+ ..-+.+.+|+ ..-+|+|.|||.
T Consensus 47 ~~~~~~~a~~~g~~---ViIa~AG~-aa~LpgvvA~--~t~~PVIgVP~~ 90 (163)
T 3ors_A 47 MVQFASEARERGIN---IIIAGAGG-AAHLPGMVAS--LTTLPVIGVPIE 90 (163)
T ss_dssp HHHHHHHTTTTTCC---EEEEEEES-SCCHHHHHHH--HCSSCEEEEEEC
T ss_pred HHHHHHHHHhCCCc---EEEEECCc-hhhhHHHHHh--ccCCCEEEeeCC
Confidence 33444444445565 88888777 4678899976 378999999986
No 41
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=69.38 E-value=5.5 Score=28.63 Aligned_cols=47 Identities=11% Similarity=0.068 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHH--h--hcCCcEEEeccc
Q 023154 4 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS--Y--LRGVSFIQIPTT 53 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~--~--~~gip~i~VPTT 53 (286)
...+...+++.+.- -|-|+|.|.+.-..|.+|-+ | ..|+.++++|.-
T Consensus 16 AGAIA~~lRe~~~v---eiqAIGa~AvNqAVKAIAIARg~l~~~g~Dl~~~PaF 66 (90)
T 2ek0_A 16 AGAIAAMLRTKGEV---EVQAIGPQAVNQAVKAIAIARGYIAPDNLDLVVKPAF 66 (90)
T ss_dssp HHHHHHHHHHHSEE---EEEECSHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEE
T ss_pred HHHHHHHHhcCCce---EEEEECHHHHHHHHHHHHHHHHhhcccCceEEEeeee
Confidence 45677888888865 79999999999999999865 2 258999999965
No 42
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=68.15 E-value=3.5 Score=33.34 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 5 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 5 ~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
.++.+.+.+.+++ +||++-|+ ..-+.+.+|+ ..-+|+|.|||.
T Consensus 56 ~~~~~~a~~~g~~---ViIa~AG~-aa~LpgvvA~--~t~~PVIgVP~~ 98 (170)
T 1xmp_A 56 FEYAETARERGLK---VIIAGAGG-AAHLPGMVAA--KTNLPVIGVPVQ 98 (170)
T ss_dssp HHHHHHTTTTTCC---EEEEEEES-SCCHHHHHHT--TCCSCEEEEEEC
T ss_pred HHHHHHHHhCCCc---EEEEECCc-hhhhHHHHHh--ccCCCEEEeeCC
Confidence 3344444445565 88888877 4678899975 478999999986
No 43
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=67.84 E-value=6.5 Score=32.30 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
+.+.+.++.+++.|++ + -|||+.++++|+- .|+|.+.+-+.
T Consensus 129 ~e~~~~i~~l~~~G~~---v--vVG~~~~~~~A~~------~Gl~~vli~sg 169 (196)
T 2q5c_A 129 DEITTLISKVKTENIK---I--VVSGKTVTDEAIK------QGLYGETINSG 169 (196)
T ss_dssp GGHHHHHHHHHHTTCC---E--EEECHHHHHHHHH------TTCEEEECCCC
T ss_pred HHHHHHHHHHHHCCCe---E--EECCHHHHHHHHH------cCCcEEEEecC
Confidence 4678899999999998 5 4569999999864 58998887664
No 44
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=67.54 E-value=7.8 Score=34.38 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCCCCceEEEEcC-chHHHHHHHHHHHh-hcCCcEEEeccc
Q 023154 6 KVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASY-LRGVSFIQIPTT 53 (286)
Q Consensus 6 ~~~~~~~~~~~~r~d~iiavGG-G~v~D~ak~~A~~~-~~gip~i~VPTT 53 (286)
++.+.+.+.++| +||++|| |++..++..++... ..++|+..||.-
T Consensus 73 ~~~~~~~~~~~d---~vvv~GGDGTl~~v~~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 73 RYVEEARKFGVA---TVIAGGGDGTINEVSTALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp HHHHHHHHHTCS---EEEEEESHHHHHHHHHHHHHCCSSCCCEEEEEECS
T ss_pred HHHHHHHhcCCC---EEEEEccchHHHHHHHHHhhcccCCCCeEEEecCc
Confidence 344444445554 9999988 99999998885311 468899999964
No 45
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=65.43 E-value=5.9 Score=40.57 Aligned_cols=63 Identities=13% Similarity=0.255 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh--------------------hcCCcEEEeccchhh---cccc
Q 023154 4 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVMA---QVDS 60 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~--------------------~~gip~i~VPTTl~~---~~da 60 (286)
..++++.+.++++| .+|.|||-=..+.|...+..| ..++|+|-||-|..+ .+|-
T Consensus 293 ~~~~~~~L~~~gId---~LvvIGGDGS~~gA~~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~gTD~ 369 (989)
T 3opy_A 293 RLQACYNMVSNGID---ALVVCGGDGSLTGADLFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCGTDS 369 (989)
T ss_dssp HHHHHHHHHHTTCC---EEEEEECHHHHHHHHHHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTTCSC
T ss_pred HHHHHHHHHHcCCC---EEEEeCCChhhHHHHHHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCCCCC
Confidence 46788999999998 999999977777776554221 148999999999863 3455
Q ss_pred CcCcceeee
Q 023154 61 SVGGKTGIN 69 (286)
Q Consensus 61 s~g~k~~i~ 69 (286)
++|--|+++
T Consensus 370 TiGFdTAl~ 378 (989)
T 3opy_A 370 TIGAYSSLE 378 (989)
T ss_dssp CEEHHHHHH
T ss_pred CCChhhHHH
Confidence 565555544
No 46
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=65.20 E-value=4.7 Score=32.71 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 5 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 5 ~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
.++.+.+.+.+++ +||++.|+ ..-+.+.+|+ ..-+|+|-|||.
T Consensus 57 ~~~~~~a~~~g~~---ViIa~AG~-aa~LpgvvA~--~t~~PVIgVP~~ 99 (174)
T 3kuu_A 57 FSFAEQAEANGLH---VIIAGNGG-AAHLPGMLAA--KTLVPVLGVPVQ 99 (174)
T ss_dssp HHHHHHTTTTTCS---EEEEEEES-SCCHHHHHHH--TCSSCEEEEEEC
T ss_pred HHHHHHHHhCCCc---EEEEECCh-hhhhHHHHHh--ccCCCEEEeeCC
Confidence 3344444445555 88888777 4668899976 468999999986
No 47
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=65.07 E-value=6.6 Score=31.81 Aligned_cols=44 Identities=27% Similarity=0.405 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 4 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
+.++.+.+.+.+++ +||++=|| ..-+.+.+|+ ...+|+|-||+.
T Consensus 56 l~~~~~~a~~~g~~---ViIa~AG~-aahLpgvvA~--~t~~PVIgVPv~ 99 (173)
T 4grd_A 56 MFDYAEKARERGLR---AIIAGAGG-AAHLPGMLAA--KTTVPVLGVPVA 99 (173)
T ss_dssp HHHHHHHHTTTTCS---EEEEEEES-SCCHHHHHHH--HCCSCEEEEEEC
T ss_pred HHHHHHHHHhcCCe---EEEEeccc-cccchhhhee--cCCCCEEEEEcC
Confidence 44455555556666 88887776 5678999976 478999999987
No 48
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=64.44 E-value=5.2 Score=37.18 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
.+.++.+.+.+.|+. ++|||+.|+ ..-+.+.+|+. ...|+|.|||.
T Consensus 308 ~~~~~~~~~~~~g~~--~viIa~AG~-~a~Lpgvva~~--t~~PVIgvP~~ 353 (425)
T 2h31_A 308 ETLRIKAEYEGDGIP--TVFVAVAGR-SNGLGPVMSGN--TAYPVISCPPL 353 (425)
T ss_dssp HHHHHHHHHHTTCCC--EEEEEECCS-SCCHHHHHHHH--CSSCEEECCCC
T ss_pred HHHHHHHHHHHCCCC--eEEEEEcCc-ccchHhHHhcc--CCCCEEEeeCc
Confidence 445556666666651 378888777 56688999764 78999999985
No 49
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=64.24 E-value=7.9 Score=38.74 Aligned_cols=63 Identities=11% Similarity=0.219 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh--------------------hcCCcEEEeccchhh---cccc
Q 023154 4 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVMA---QVDS 60 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~--------------------~~gip~i~VPTTl~~---~~da 60 (286)
..++++.++++++| .+|.+||-=..+.|...+..| ..++|++-||-|..+ .+|-
T Consensus 87 ~~~~~~~l~~~~Id---~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~gTD~ 163 (766)
T 3o8o_B 87 RLLGAQHLIEAGVD---ALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTTDA 163 (766)
T ss_dssp HHHHHHHHHHHTCC---EEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTTCSC
T ss_pred HHHHHHHHHHcCCC---EEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCCCCC
Confidence 45678899999999 999999977777775432111 248999999999863 3466
Q ss_pred CcCcceeee
Q 023154 61 SVGGKTGIN 69 (286)
Q Consensus 61 s~g~k~~i~ 69 (286)
++|--|+++
T Consensus 164 TiGfdTA~~ 172 (766)
T 3o8o_B 164 TIGAYSALD 172 (766)
T ss_dssp CBTHHHHHH
T ss_pred CCChhHHHH
Confidence 666666554
No 50
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=63.54 E-value=7.6 Score=38.84 Aligned_cols=64 Identities=6% Similarity=0.171 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh--------------------hcCCcEEEeccchhh---ccc
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVMA---QVD 59 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~--------------------~~gip~i~VPTTl~~---~~d 59 (286)
...++.+.++++++| .+|.+||-=..+.|...+..| ..++|++-||-|.-+ .+|
T Consensus 97 ~~~~~~~~l~~~~Id---~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~gTD 173 (762)
T 3o8l_A 97 GRLRAAHNLVKRGIT---NLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGTD 173 (762)
T ss_dssp HHHHHHHHHHHHCCC---EEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSSCS
T ss_pred HHHHHHHHHHHcCCC---EEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCCCc
Confidence 356788999999999 999999987777776553211 137999999999863 335
Q ss_pred cCcCcceeee
Q 023154 60 SSVGGKTGIN 69 (286)
Q Consensus 60 as~g~k~~i~ 69 (286)
-++|--|+++
T Consensus 174 ~TiGfdTA~~ 183 (762)
T 3o8l_A 174 MTIGTDSALH 183 (762)
T ss_dssp CCBTHHHHHH
T ss_pred CCcCchhHHH
Confidence 5666655554
No 51
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=63.44 E-value=9.1 Score=30.59 Aligned_cols=44 Identities=11% Similarity=0.305 Sum_probs=30.7
Q ss_pred HHHHHHHHHHc-CCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 4 LMKVFDKAIES-RLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 4 v~~~~~~~~~~-~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
+.++.+.+.+. +++ +||++-|+. .-+.+.+|+ ..-+|+|.|||.
T Consensus 46 ~~~~~~~a~~~~~~~---ViIa~AG~a-a~LpgvvA~--~t~~PVIgVP~~ 90 (159)
T 3rg8_A 46 VVSMLKEYEALDRPK---LYITIAGRS-NALSGFVDG--FVKGATIACPPP 90 (159)
T ss_dssp HHHHHHHHHTSCSCE---EEEEECCSS-CCHHHHHHH--HSSSCEEECCCC
T ss_pred HHHHHHHhhhcCCCc---EEEEECCch-hhhHHHHHh--ccCCCEEEeeCC
Confidence 33444444433 354 888888774 668899976 378999999986
No 52
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=62.53 E-value=8.6 Score=32.44 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEec
Q 023154 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIP 51 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VP 51 (286)
+.+.+.++.+++.|++ + -|||+.++|+|+- .|+|.+.+-
T Consensus 141 ee~~~~i~~l~~~G~~---v--VVG~~~~~~~A~~------~Gl~~vlI~ 179 (225)
T 2pju_A 141 EDARGQINELKANGTE---A--VVGAGLITDLAEE------AGMTGIFIY 179 (225)
T ss_dssp HHHHHHHHHHHHTTCC---E--EEESHHHHHHHHH------TTSEEEESS
T ss_pred HHHHHHHHHHHHCCCC---E--EECCHHHHHHHHH------cCCcEEEEC
Confidence 4678899999999998 5 4579999999864 488888776
No 53
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=62.09 E-value=5.4 Score=34.91 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCC------------CCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023154 4 LMKVFDKAIESRLD------------RRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 4 v~~~~~~~~~~~~~------------r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
+.++.+.+.+.|++ ..|+||++|| |+++.+++.++ .. +|++-|.|
T Consensus 42 ~~~l~~~L~~~g~~v~~~~~~~~~~~~~DlvIvlGGDGT~L~aa~~~~---~~-~PilGIN~ 99 (278)
T 1z0s_A 42 VKRIEEALKRLEVEVELFNQPSEELENFDFIVSVGGDGTILRILQKLK---RC-PPIFGINT 99 (278)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCGGGGGSSEEEEEECHHHHHHHHTTCS---SC-CCEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEccccccccCCCCEEEEECCCHHHHHHHHHhC---CC-CcEEEECC
Confidence 46777888887653 4589999988 88888887652 23 88888875
No 54
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae}
Probab=59.23 E-value=28 Score=29.93 Aligned_cols=39 Identities=10% Similarity=0.149 Sum_probs=29.1
Q ss_pred CCceEEEEcCchHHH-HHHHHHHHhhcCCcEEEeccchhh
Q 023154 18 RRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTTVMA 56 (286)
Q Consensus 18 r~d~iiavGGG~v~D-~ak~~A~~~~~gip~i~VPTTl~~ 56 (286)
++..+|++|+||+.- ++++++...+.|+.+..|||+..+
T Consensus 40 ~dg~vIgLGsGST~~~~i~~L~~~~~~gl~ItvVttS~~t 79 (255)
T 3hhe_A 40 EDDMRLGIGSGSTVNEFIPLLGERVANGLRVTCVATSQYS 79 (255)
T ss_dssp CTTEEEEECCSHHHHHHHHHHHHHHHTTCCEEEEESSHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhhccCCcEEEEcCCHHH
Confidence 467899999998765 667776544457788999998643
No 55
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=56.66 E-value=8.9 Score=31.25 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=29.5
Q ss_pred HHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 6 KVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 6 ~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
+..+.+.+.|++ +|||.=|| ..-+.+.+|+ ..-+|+|-||+-
T Consensus 68 ~~~~~a~~~g~~---ViIa~AG~-aahLpGvvAa--~T~~PVIGVPv~ 109 (181)
T 4b4k_A 68 EYAETARERGLK---VIIAGAGG-AAHLPGMVAA--KTNLPVIGVPVQ 109 (181)
T ss_dssp HHHHHTTTTTCC---EEEEEECS-SCCHHHHHHT--TCCSCEEEEECC
T ss_pred HHHHHHHhcCce---EEEEeccc-cccchhhHHh--cCCCCEEEEecC
Confidence 333444445554 88888666 4678899976 478999999985
No 56
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=55.43 E-value=12 Score=33.20 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=26.7
Q ss_pred CCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 18 RRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 18 r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
..|.||++|| |++..++..+.. ...++|+..||.-
T Consensus 80 ~~d~vvv~GGDGTv~~v~~~l~~-~~~~~pl~iIP~G 115 (337)
T 2qv7_A 80 NYDVLIAAGGDGTLNEVVNGIAE-KPNRPKLGVIPMG 115 (337)
T ss_dssp TCSEEEEEECHHHHHHHHHHHTT-CSSCCEEEEEECS
T ss_pred CCCEEEEEcCchHHHHHHHHHHh-CCCCCcEEEecCC
Confidence 3469999988 899998887621 2468999999963
No 57
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=55.32 E-value=9.2 Score=39.06 Aligned_cols=63 Identities=11% Similarity=0.223 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh--------------------hcCCcEEEeccchhh---cccc
Q 023154 4 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVMA---QVDS 60 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~--------------------~~gip~i~VPTTl~~---~~da 60 (286)
..++++.++++++| .+|.+||-=.++.|...+..| ..++|+|-||-|..+ .+|-
T Consensus 265 ~~~~~~~L~~~gId---~LvvIGGDGS~~gA~~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~gTD~ 341 (941)
T 3opy_B 265 RLKACKNMIDMGID---ALIVCGGDGSLTGADRFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSSTDA 341 (941)
T ss_dssp HHHHHHHHHHHTCC---EEEEEECHHHHHHHHHHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCSSCSS
T ss_pred HHHHHHHHHHcCCC---EEEEeCCChhHHHHHHHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCCCCCC
Confidence 35678899999998 999999977777775443211 248999999999853 3455
Q ss_pred CcCcceeee
Q 023154 61 SVGGKTGIN 69 (286)
Q Consensus 61 s~g~k~~i~ 69 (286)
++|--|+++
T Consensus 342 TiGfdTAv~ 350 (941)
T 3opy_B 342 TIGAFSSLD 350 (941)
T ss_dssp CEEHHHHHH
T ss_pred CCChHHHHH
Confidence 555555544
No 58
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii}
Probab=55.14 E-value=21 Score=30.10 Aligned_cols=38 Identities=16% Similarity=0.252 Sum_probs=25.5
Q ss_pred CCceEEEEcCchHHHHH-HHHHHHh-hcCCcEEEeccchh
Q 023154 18 RRCTFVALGGGVIGDMC-GYAAASY-LRGVSFIQIPTTVM 55 (286)
Q Consensus 18 r~d~iiavGGG~v~D~a-k~~A~~~-~~gip~i~VPTTl~ 55 (286)
++.++|++|.||+.... ...+... ..++.+..|||+..
T Consensus 19 ~~gmvvGlGTGSTv~~~I~~L~~~~~~~~l~i~~v~tS~~ 58 (226)
T 3ixq_A 19 KDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSFE 58 (226)
T ss_dssp CTTCEEEECCSHHHHHHHHHHHHHHHHHTCCCEEEESSHH
T ss_pred CCCCEEEeCcHHHHHHHHHHHHHhhhhcCCeeEeecccHH
Confidence 57799999999986632 3333222 23777889998643
No 59
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=53.47 E-value=7.2 Score=39.11 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh--------------------hcCCcEEEeccchhh---cccc
Q 023154 4 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVMA---QVDS 60 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~--------------------~~gip~i~VPTTl~~---~~da 60 (286)
..++++.+.++++| .+|.+||-=..+.|...+..| ..++|++-||-|..+ .+|-
T Consensus 88 ~~~~~~~l~~~~Id---~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~gTD~ 164 (787)
T 3o8o_A 88 RRQAAGNLISQGID---ALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSGTDS 164 (787)
T ss_dssp HHHHHHHHHHHTEE---EEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTTSSC
T ss_pred HHHHHHHHHHcCCC---EEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCCCCC
Confidence 45678899999998 999999977777776543111 137999999999863 3355
Q ss_pred CcCcceeee
Q 023154 61 SVGGKTGIN 69 (286)
Q Consensus 61 s~g~k~~i~ 69 (286)
++|--|+++
T Consensus 165 TiGfdTAl~ 173 (787)
T 3o8o_A 165 TIGAYSALE 173 (787)
T ss_dssp CEEHHHHHH
T ss_pred CCCcHHHHH
Confidence 565555554
No 60
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius}
Probab=50.93 E-value=28 Score=29.44 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=25.9
Q ss_pred CCceEEEEcCchHHHHH-HHHHHHh-hcCCcEEEeccchh
Q 023154 18 RRCTFVALGGGVIGDMC-GYAAASY-LRGVSFIQIPTTVM 55 (286)
Q Consensus 18 r~d~iiavGGG~v~D~a-k~~A~~~-~~gip~i~VPTTl~ 55 (286)
++.++|++|.||+.... ..+|... ..++.+..|||+..
T Consensus 20 ~~gmvvGlGTGSTv~~~i~~L~~~~~~~~l~i~~V~tS~~ 59 (228)
T 4gmk_A 20 KDGMIVGLGTGSTVKYMVDALGKRVNEEGLDIVGVTTSIR 59 (228)
T ss_dssp CTTCEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEESSHH
T ss_pred CCCCEEEECchHHHHHHHHHHHHHHhhcCCcEEEEeCcHH
Confidence 56799999999976643 2332211 24788899999754
No 61
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=48.57 E-value=12 Score=29.78 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=29.9
Q ss_pred HHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEecc
Q 023154 5 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 5 ~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
+++.+...+..- ++||++-|+ ..-+.+.+|+ ....|+|.|||
T Consensus 41 ~~~~~~~~~a~~---~ViIa~AG~-aa~Lpgvva~--~t~~PVIgVP~ 82 (157)
T 2ywx_A 41 ELVEEIVKNSKA---DVFIAIAGL-AAHLPGVVAS--LTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHCCC---SEEEEEEES-SCCHHHHHHT--TCSSCEEEEEE
T ss_pred HHHHHHHHhcCC---CEEEEEcCc-hhhhHHHHHh--ccCCCEEEecC
Confidence 344455554432 588888877 4668899975 47899999999
No 62
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=45.23 E-value=16 Score=25.93 Aligned_cols=65 Identities=11% Similarity=0.150 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEe--ecCCCcceEEcCCCCHHHHHHHHHHHh
Q 023154 212 IVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLIL--LKGPLGNCVFTGDYDRKALDDTLYAFC 284 (286)
Q Consensus 212 ~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l--~~~~iG~~~~~~~v~~~~~~~~~~~~~ 284 (286)
...+.+++|++.|+|....+. -+++. .+.+.. ..+|+-.+|. ..+ |.+ + .+.+.++|++.|.+..
T Consensus 16 ~C~~aK~~L~~~gi~y~~idi~~d~~~-~~~~~~---~~~G~~tVP~I~i~D--g~~-l-~~~~~~el~~~L~el~ 83 (92)
T 2lqo_A 16 YCLRLKTALTANRIAYDEVDIEHNRAA-AEFVGS---VNGGNRTVPTVKFAD--GST-L-TNPSADEVKAKLVKIA 83 (92)
T ss_dssp SHHHHHHHHHHTTCCCEEEETTTCHHH-HHHHHH---HSSSSSCSCEEEETT--SCE-E-ESCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCHHH-HHHHHH---HcCCCCEeCEEEEeC--CEE-E-eCCCHHHHHHHHHHhc
Confidence 367889999999999764332 23333 344432 1223222222 221 443 2 3678899999887753
No 63
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=44.97 E-value=27 Score=30.36 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=25.3
Q ss_pred CCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 18 RRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 18 r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
..|.||++|| |++..++-.++. ...++|+..||.-
T Consensus 63 ~~d~vv~~GGDGTl~~v~~~l~~-~~~~~~l~iiP~G 98 (304)
T 3s40_A 63 KVDLIIVFGGDGTVFECTNGLAP-LEIRPTLAIIPGG 98 (304)
T ss_dssp TCSEEEEEECHHHHHHHHHHHTT-CSSCCEEEEEECS
T ss_pred CCCEEEEEccchHHHHHHHHHhh-CCCCCcEEEecCC
Confidence 4568988888 888887766532 1257999999964
No 64
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Probab=43.98 E-value=43 Score=28.13 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHH-HHHHHHHHhh-cCCcEEEeccchhh
Q 023154 4 LMKVFDKAIESRLDRRCTFVALGGGVIGD-MCGYAAASYL-RGVSFIQIPTTVMA 56 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D-~ak~~A~~~~-~gip~i~VPTTl~~ 56 (286)
..+.+......-+ ++..+|++|+||+.- ++++++...+ .+..+..|||+..+
T Consensus 4 ~K~~iA~~A~~~V-~dg~vIgLGsGST~~~~i~~L~~~~~~~~~~i~~VttS~~t 57 (225)
T 3l7o_A 4 LKKIAGVRAAQYV-EDGMIVGLGTGSTAYYFVEEVGRRVQEEGLQVIGVTTSSRT 57 (225)
T ss_dssp HHHHHHHHHHTTC-CTTCEEEECCSTTHHHHHHHHHHHHHHHCCCCEEEESSHHH
T ss_pred HHHHHHHHHHHhC-CCCCEEEECCcHHHHHHHHHHHHhhhhcCCCEEEEcCCHHH
Confidence 3343333333334 467899999999765 5566653221 15677889988643
No 65
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=39.24 E-value=23 Score=30.47 Aligned_cols=31 Identities=23% Similarity=0.194 Sum_probs=24.7
Q ss_pred CceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023154 19 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 19 ~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
.|+||++|| |++.-++..++ ..++|++-||+
T Consensus 64 ~D~vi~~GGDGT~l~a~~~~~---~~~~P~lGI~~ 95 (292)
T 2an1_A 64 ADLAVVVGGDGNMLGAARTLA---RYDINVIGINR 95 (292)
T ss_dssp CSEEEECSCHHHHHHHHHHHT---TSSCEEEEBCS
T ss_pred CCEEEEEcCcHHHHHHHHHhh---cCCCCEEEEEC
Confidence 369999988 79999888773 34789999983
No 66
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=35.59 E-value=28 Score=31.52 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=25.6
Q ss_pred CCCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023154 17 DRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 17 ~r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
+..|+||++|| |+++-+++..+ ..++|++-|-+
T Consensus 107 ~~~DlvI~lGGDGT~L~aa~~~~---~~~~PvlGiN~ 140 (365)
T 3pfn_A 107 NQIDFIICLGGDGTLLYASSLFQ---GSVPPVMAFHL 140 (365)
T ss_dssp TTCSEEEEESSTTHHHHHHHHCS---SSCCCEEEEES
T ss_pred cCCCEEEEEcChHHHHHHHHHhc---cCCCCEEEEcC
Confidence 35679999998 99999888762 35788877754
No 67
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=31.52 E-value=33 Score=29.96 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=24.9
Q ss_pred CCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023154 18 RRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 18 r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
..|+||++|| |++.-++..++. .++|++-|++
T Consensus 75 ~~d~vi~~GGDGT~l~a~~~~~~---~~~pvlgi~~ 107 (307)
T 1u0t_A 75 GCELVLVLGGDGTFLRAAELARN---ASIPVLGVNL 107 (307)
T ss_dssp -CCCEEEEECHHHHHHHHHHHHH---HTCCEEEEEC
T ss_pred CCCEEEEEeCCHHHHHHHHHhcc---CCCCEEEEeC
Confidence 3469999988 888888887753 4789988884
No 68
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.09 E-value=1.4e+02 Score=20.86 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
.++.++..++++|-. +++-+-|.|-.|+-.|---+-+.|+.|-..-.|
T Consensus 39 dirdiiksmkdngkp---lvvfvngasqndvnefqneakkegvsydvlkst 86 (112)
T 2lnd_A 39 DIRDIIKSMKDNGKP---LVVFVNGASQNDVNEFQNEAKKEGVSYDVLKST 86 (112)
T ss_dssp HHHHHHHHHTTCCSC---EEEEECSCCHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred hHHHHHHHHHhcCCe---EEEEecCcccccHHHHHHHHHhcCcchhhhccC
Confidence 355667777777766 888888888888887776556677777655443
No 69
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=29.26 E-value=33 Score=31.36 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=23.7
Q ss_pred CceEEEEcC-chHHHHHHHHHHHhhcCC-cEEEecc
Q 023154 19 RCTFVALGG-GVIGDMCGYAAASYLRGV-SFIQIPT 52 (286)
Q Consensus 19 ~d~iiavGG-G~v~D~ak~~A~~~~~gi-p~i~VPT 52 (286)
.|+||++|| |+++-++..++ .+++ |++-|++
T Consensus 115 ~DlVIvlGGDGTlL~aa~~~~---~~~vpPiLGIN~ 147 (388)
T 3afo_A 115 TDLLVTLGGDGTILHGVSMFG---NTQVPPVLAFAL 147 (388)
T ss_dssp CSEEEEEESHHHHHHHHHTTT---TSCCCCEEEEEC
T ss_pred CCEEEEEeCcHHHHHHHHHhc---ccCCCeEEEEEC
Confidence 369999988 88888877652 3577 7998875
No 70
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=27.01 E-value=1.6e+02 Score=24.53 Aligned_cols=39 Identities=10% Similarity=0.013 Sum_probs=28.5
Q ss_pred CCCCceEEEEcCchH------------------HHHHHHHHHHhhcCCcEEEeccch
Q 023154 16 LDRRCTFVALGGGVI------------------GDMCGYAAASYLRGVSFIQIPTTV 54 (286)
Q Consensus 16 ~~r~d~iiavGGG~v------------------~D~ak~~A~~~~~gip~i~VPTTl 54 (286)
.+..|.|+--||-.. -++..++...+.+|.|+..|.+..
T Consensus 105 ~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~ 161 (242)
T 3l3b_A 105 VEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISP 161 (242)
T ss_dssp GGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHH
T ss_pred cccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHH
Confidence 345678888888533 356777777788999999997754
No 71
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=26.47 E-value=94 Score=26.49 Aligned_cols=43 Identities=7% Similarity=0.116 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
+...+++.+...++| +||++|.- .+.+++. ....+|++....|
T Consensus 57 ~~~~~~~~l~~~~~D---lIiai~t~----aa~a~~~-~~~~iPVVf~~v~ 99 (302)
T 3lkv_A 57 IAVQIARQFVGENPD---VLVGIATP----TAQALVS-ATKTIPIVFTAVT 99 (302)
T ss_dssp HHHHHHHHHHTTCCS---EEEEESHH----HHHHHHH-HCSSSCEEEEEES
T ss_pred HHHHHHHHHHhcCCc---EEEEcCCH----HHHHHHh-hcCCCCeEEEecC
Confidence 456777888877766 99998743 3444432 3468898765433
No 72
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=25.83 E-value=22 Score=30.20 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=23.5
Q ss_pred CCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023154 18 RRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 18 r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
..|+||++|| |++.-++..++ . ++|++-|++
T Consensus 41 ~~D~vv~~GGDGTll~~a~~~~---~-~~PilGIn~ 72 (258)
T 1yt5_A 41 TADLIVVVGGDGTVLKAAKKAA---D-GTPMVGFKA 72 (258)
T ss_dssp CCSEEEEEECHHHHHHHHTTBC---T-TCEEEEEES
T ss_pred CCCEEEEEeCcHHHHHHHHHhC---C-CCCEEEEEC
Confidence 4579999987 88888776652 2 889888873
No 73
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=25.52 E-value=1.5e+02 Score=21.01 Aligned_cols=42 Identities=5% Similarity=-0.108 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhc-CCcEEEe
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLR-GVSFIQI 50 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~-gip~i~V 50 (286)
+..+.++.+.+..+| +|| +.+..-.++.+.+-.. . .+|++.+
T Consensus 50 ~~~~al~~l~~~~~d---lvi-~~~~~g~~~~~~l~~~--~~~~~ii~l 92 (137)
T 2pln_A 50 SLEDGEYLMDIRNYD---LVM-VSDKNALSFVSRIKEK--HSSIVVLVS 92 (137)
T ss_dssp CHHHHHHHHHHSCCS---EEE-ECSTTHHHHHHHHHHH--STTSEEEEE
T ss_pred CHHHHHHHHHcCCCC---EEE-EcCccHHHHHHHHHhc--CCCccEEEE
Confidence 345667777776555 888 8887888888887543 4 6777665
No 74
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=23.29 E-value=54 Score=28.28 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=21.3
Q ss_pred CCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023154 18 RRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 18 r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
++|++|+-||+++..++ ..|+|.+.||+.
T Consensus 225 ~aDlvI~~gG~T~~E~~-------~~g~P~i~ip~~ 253 (282)
T 3hbm_A 225 ESNKLIISASSLVNEAL-------LLKANFKAICYV 253 (282)
T ss_dssp TEEEEEEESSHHHHHHH-------HTTCCEEEECCS
T ss_pred HCCEEEECCcHHHHHHH-------HcCCCEEEEeCC
Confidence 34699998876655543 269999999964
No 75
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=21.81 E-value=1.7e+02 Score=26.12 Aligned_cols=50 Identities=24% Similarity=0.262 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEeccchhhccccC
Q 023154 4 LMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSS 61 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das 61 (286)
+.++.+.+.+.++ .|||-|| .+..|++|++++ |...+.+-|.+....++.
T Consensus 196 i~~v~~~~~~~~i----PVIA~GGI~~~~di~kala~----GAd~V~vGs~~~~t~Esp 246 (361)
T 3khj_A 196 IEKCSSVASKFGI----PIIADGGIRYSGDIGKALAV----GASSVMIGSILAGTEESP 246 (361)
T ss_dssp HHHHHHHHHHHTC----CEEEESCCCSHHHHHHHHHH----TCSEEEESTTTTTBTTSS
T ss_pred HHHHHHHHhhcCC----eEEEECCCCCHHHHHHHHHc----CCCEEEEChhhhcCCcCC
Confidence 4455555555566 4888888 478999999864 778899988877754433
No 76
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=21.50 E-value=75 Score=30.40 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCCceEEEEcCchHH-----------------HHHHHHHHHhhcCCcEEE
Q 023154 5 MKVFDKAIESRLDRRCTFVALGGGVIG-----------------DMCGYAAASYLRGVSFIQ 49 (286)
Q Consensus 5 ~~~~~~~~~~~~~r~d~iiavGGG~v~-----------------D~ak~~A~~~~~gip~i~ 49 (286)
.+..+.|.+.|+| -+-|++|+||+| |+++++ -..|+|+|+
T Consensus 333 ~e~a~~Li~aGAD--~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a---~~~~vpvIA 389 (556)
T 4af0_A 333 REQAAQLIAAGAD--GLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFA---SRFGIPCIA 389 (556)
T ss_dssp HHHHHHHHHHTCS--EEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHH---GGGTCCEEE
T ss_pred HHHHHHHHHcCCC--EEeecCCCCcccccccccCCCCcHHHHHHHHHHHH---HHcCCCEEe
No 77
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=21.40 E-value=92 Score=22.71 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHH
Q 023154 213 VKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 213 ~~~i~~~l~~~glp~~l~~~~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~ 282 (286)
++++.+.|..+|||..-....-.|.++..+..+.+.+ ..+ .++- ..++.|++.++++.
T Consensus 22 ikelkdvl~~lgl~kqgkKqdL~Dril~llsd~q~~~--------~~~-~~~K---~~v~kE~vaKIVDD 79 (110)
T 2rno_A 22 IKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQGQR--------HHG-WGRK---NSLTKEAVAKIVDD 79 (110)
T ss_dssp HHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHSSCCTT--------SCC-CSTT---GGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcccCccHHHHHHHHHHcCHHHhcc--------ccc-cccc---ccccHHHHHHHHHH
Confidence 7889999999999976432222456666665554432 111 2222 46788888888753
No 78
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=21.34 E-value=1.7e+02 Score=26.03 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEec
Q 023154 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIP 51 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VP 51 (286)
.+.++.+.+++.++| +|+.+|+-... ++...| +.++|+|++.+-
T Consensus 99 ~~~~l~~~l~~~kPD---vVi~~g~~~~~-~~~~~a-a~~~~IPv~h~~ 142 (396)
T 3dzc_A 99 ILLGMQQVLSSEQPD---VVLVHGDTATT-FAASLA-AYYQQIPVGHVE 142 (396)
T ss_dssp HHHHHHHHHHHHCCS---EEEEETTSHHH-HHHHHH-HHTTTCCEEEET
T ss_pred HHHHHHHHHHhcCCC---EEEEECCchhH-HHHHHH-HHHhCCCEEEEE
Confidence 356677888888776 99999865432 333343 356899988764
No 79
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=21.08 E-value=96 Score=25.04 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchh
Q 023154 5 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVM 55 (286)
Q Consensus 5 ~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~ 55 (286)
++..+.+++. -...|+||+=|| +|.++-. ..++|++.||.|..
T Consensus 39 ~~~v~~a~~~-~~~~dVIISRGg-----ta~~lr~--~~~iPVV~I~~s~~ 81 (196)
T 2q5c_A 39 TRASKIAFGL-QDEVDAIISRGA-----TSDYIKK--SVSIPSISIKVTRF 81 (196)
T ss_dssp HHHHHHHHHH-TTTCSEEEEEHH-----HHHHHHT--TCSSCEEEECCCHH
T ss_pred HHHHHHHHHh-cCCCeEEEECCh-----HHHHHHH--hCCCCEEEEcCCHh
Confidence 3444444443 233458888775 4555532 35899999998843
Done!