Query 023155
Match_columns 286
No_of_seqs 229 out of 783
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:49:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023155.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023155hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3065 SNAP-25 (synaptosome-a 100.0 2.2E-44 4.9E-49 330.6 22.6 259 12-284 3-273 (273)
2 PF05739 SNARE: SNARE domain; 99.2 8.5E-11 1.8E-15 85.1 7.9 60 226-285 1-60 (63)
3 cd00193 t_SNARE Soluble NSF (N 99.0 4.1E-09 8.8E-14 74.7 8.0 59 225-283 2-60 (60)
4 KOG3202 SNARE protein TLG1/Syn 98.9 2.4E-09 5.1E-14 97.3 7.7 63 223-285 146-208 (235)
5 smart00397 t_SNARE Helical reg 98.8 2.1E-08 4.6E-13 72.1 7.2 61 223-283 6-66 (66)
6 PF12352 V-SNARE_C: Snare regi 98.8 3.6E-08 7.8E-13 72.3 8.2 60 86-145 4-63 (66)
7 KOG3385 V-SNARE [Intracellular 98.4 3.4E-07 7.4E-12 74.1 5.3 63 223-285 30-92 (118)
8 KOG1666 V-SNARE [Intracellular 98.2 1.3E-05 2.9E-10 71.4 9.6 76 68-145 115-190 (220)
9 smart00397 t_SNARE Helical reg 97.6 0.00073 1.6E-08 48.2 9.1 61 83-143 5-65 (66)
10 cd00193 t_SNARE Soluble NSF (N 97.0 0.0062 1.3E-07 42.6 8.3 55 89-143 5-59 (60)
11 PF03908 Sec20: Sec20; InterP 96.8 0.0098 2.1E-07 46.4 8.6 60 86-145 4-63 (92)
12 PF05739 SNARE: SNARE domain; 95.7 0.14 3.1E-06 36.4 8.9 50 95-144 9-58 (63)
13 PF12352 V-SNARE_C: Snare regi 94.7 0.18 3.9E-06 36.5 7.0 58 228-285 7-64 (66)
14 PF09753 Use1: Membrane fusion 94.7 0.16 3.5E-06 46.6 8.2 63 224-286 162-224 (251)
15 KOG0810 SNARE protein Syntaxin 92.6 0.55 1.2E-05 44.5 8.0 55 229-283 206-260 (297)
16 COG5325 t-SNARE complex subuni 89.5 1.4 3E-05 41.3 7.3 60 224-283 190-249 (283)
17 KOG0811 SNARE protein PEP12/VA 84.8 8.8 0.00019 36.0 9.8 60 84-143 174-233 (269)
18 PRK00846 hypothetical protein; 80.9 9.8 0.00021 29.0 7.1 54 224-277 8-61 (77)
19 KOG0810 SNARE protein Syntaxin 80.9 17 0.00036 34.6 10.2 46 97-142 213-258 (297)
20 KOG0811 SNARE protein PEP12/VA 79.7 7.4 0.00016 36.4 7.3 61 224-284 175-235 (269)
21 KOG0809 SNARE protein TLG2/Syn 79.5 4 8.7E-05 38.6 5.5 64 220-283 209-272 (305)
22 COG5325 t-SNARE complex subuni 78.1 16 0.00035 34.3 8.9 46 100-145 205-250 (283)
23 KOG0812 SNARE protein SED5/Syn 76.3 40 0.00086 32.0 11.0 59 89-147 226-285 (311)
24 PF07889 DUF1664: Protein of u 76.3 20 0.00043 29.8 8.2 62 224-285 63-124 (126)
25 PRK00736 hypothetical protein; 74.2 22 0.00048 26.2 7.2 49 228-276 4-52 (68)
26 PF04102 SlyX: SlyX; InterPro 74.0 17 0.00036 26.8 6.5 51 227-277 2-52 (69)
27 PRK04325 hypothetical protein; 72.6 25 0.00054 26.4 7.2 52 225-276 5-56 (74)
28 PF01519 DUF16: Protein of unk 72.0 48 0.001 26.6 9.0 45 229-273 53-97 (102)
29 PRK02119 hypothetical protein; 71.6 25 0.00055 26.3 7.1 53 224-276 4-56 (73)
30 PRK04406 hypothetical protein; 71.4 25 0.00053 26.5 7.0 51 226-276 8-58 (75)
31 PRK00295 hypothetical protein; 71.3 30 0.00066 25.5 7.3 51 227-277 3-53 (68)
32 PRK02793 phi X174 lysis protei 70.9 29 0.00063 25.9 7.2 50 227-276 6-55 (72)
33 KOG3202 SNARE protein TLG1/Syn 70.7 59 0.0013 29.9 10.6 42 104-145 166-207 (235)
34 COG5074 t-SNARE complex subuni 70.2 16 0.00034 33.7 6.6 58 228-285 184-241 (280)
35 KOG2678 Predicted membrane pro 69.5 22 0.00048 32.5 7.4 57 227-283 153-209 (244)
36 PF00835 SNAP-25: SNAP-25 fami 69.1 1.4 3.1E-05 32.0 -0.2 46 170-222 15-61 (61)
37 PF01519 DUF16: Protein of unk 67.8 37 0.0008 27.3 7.5 64 220-283 35-100 (102)
38 KOG4421 Uncharacterized conser 62.3 4.6 9.9E-05 39.6 1.7 20 9-28 445-464 (637)
39 KOG3065 SNAP-25 (synaptosome-a 59.4 29 0.00062 32.6 6.4 54 91-144 219-272 (273)
40 cd00179 SynN Syntaxin N-termin 57.8 41 0.00089 27.6 6.6 59 225-283 9-67 (151)
41 PF03670 UPF0184: Uncharacteri 56.7 25 0.00055 27.2 4.6 23 252-274 35-57 (83)
42 PF15456 Uds1: Up-regulated Du 56.4 1.1E+02 0.0025 25.2 10.6 75 69-145 19-108 (124)
43 KOG3208 SNARE protein GS28 [In 56.3 62 0.0013 29.6 7.7 56 89-144 148-203 (231)
44 COG1538 TolC Outer membrane pr 54.7 72 0.0016 31.3 8.8 65 83-147 171-235 (457)
45 KOG0812 SNARE protein SED5/Syn 54.2 52 0.0011 31.2 7.1 56 229-284 227-282 (311)
46 PF10046 BLOC1_2: Biogenesis o 53.9 93 0.002 24.4 7.7 54 225-282 38-91 (99)
47 PF10046 BLOC1_2: Biogenesis o 53.8 1.1E+02 0.0023 24.0 8.1 24 258-281 74-97 (99)
48 KOG2546 Abl interactor ABI-1, 50.7 78 0.0017 31.7 8.0 52 97-148 62-118 (483)
49 PF10475 DUF2450: Protein of u 50.3 1.9E+02 0.0041 26.9 10.4 53 91-144 85-137 (291)
50 smart00503 SynN Syntaxin N-ter 49.8 75 0.0016 24.7 6.6 30 224-253 10-39 (117)
51 PRK09973 putative outer membra 49.5 90 0.0019 24.3 6.7 44 231-274 26-69 (85)
52 PF00957 Synaptobrevin: Synapt 49.2 1.1E+02 0.0024 23.0 8.0 49 97-145 10-58 (89)
53 PF05531 NPV_P10: Nucleopolyhe 46.9 50 0.0011 25.1 4.8 49 225-273 14-65 (75)
54 PF03908 Sec20: Sec20; InterP 46.7 1.3E+02 0.0028 23.0 8.2 59 227-285 6-64 (92)
55 PF08614 ATG16: Autophagy prot 46.7 1.5E+02 0.0032 25.9 8.6 61 223-283 110-170 (194)
56 PF08650 DASH_Dad4: DASH compl 45.2 45 0.00098 25.1 4.3 30 254-283 8-37 (72)
57 PF04728 LPP: Lipoprotein leuc 44.4 89 0.0019 22.4 5.5 37 227-263 15-51 (56)
58 PF14523 Syntaxin_2: Syntaxin- 42.0 86 0.0019 24.0 5.8 55 228-283 2-56 (102)
59 PF13747 DUF4164: Domain of un 41.3 1.7E+02 0.0036 22.7 8.0 55 232-286 35-89 (89)
60 PRK11637 AmiB activator; Provi 40.7 3.2E+02 0.0069 26.8 10.8 77 70-146 45-124 (428)
61 PRK09837 copper/silver efflux 40.4 1.4E+02 0.003 29.2 8.2 64 84-147 186-249 (461)
62 PRK09915 putative outer membra 40.3 1.3E+02 0.0028 29.8 8.1 64 84-147 206-269 (488)
63 KOG3894 SNARE protein Syntaxin 38.7 1E+02 0.0022 29.6 6.5 59 227-285 230-288 (316)
64 PF04728 LPP: Lipoprotein leuc 38.4 1.5E+02 0.0032 21.3 7.3 47 230-276 4-50 (56)
65 PRK11637 AmiB activator; Provi 38.1 1.6E+02 0.0034 29.0 8.2 54 231-284 77-130 (428)
66 PF00957 Synaptobrevin: Synapt 38.1 1.7E+02 0.0037 21.9 7.4 53 229-281 3-55 (89)
67 PF00015 MCPsignal: Methyl-acc 38.0 1.9E+02 0.0042 24.5 8.0 62 80-141 83-151 (213)
68 PRK10803 tol-pal system protei 36.9 1.8E+02 0.0038 26.9 7.9 30 247-276 58-87 (263)
69 PF14712 Snapin_Pallidin: Snap 34.7 2E+02 0.0043 21.7 7.6 56 228-283 34-90 (92)
70 PF05837 CENP-H: Centromere pr 31.4 2.7E+02 0.0058 22.1 9.0 59 91-149 22-82 (106)
71 COG4768 Uncharacterized protei 31.3 1.5E+02 0.0033 25.0 5.8 48 225-272 27-78 (139)
72 KOG4603 TBP-1 interacting prot 30.6 2.9E+02 0.0062 24.5 7.5 68 216-283 73-142 (201)
73 KOG0809 SNARE protein TLG2/Syn 30.3 2.5E+02 0.0053 26.9 7.6 49 97-145 225-273 (305)
74 PF05377 FlaC_arch: Flagella a 28.9 2.2E+02 0.0048 20.3 5.7 38 225-262 3-40 (55)
75 PF09753 Use1: Membrane fusion 28.6 4.5E+02 0.0097 23.8 9.6 55 91-145 168-222 (251)
76 TIGR01845 outer_NodT efflux tr 28.3 2.8E+02 0.0061 26.6 8.1 64 84-147 181-244 (454)
77 PF11945 WASH_WAHD: WAHD domai 28.2 3E+02 0.0065 26.2 7.9 55 228-285 17-71 (297)
78 KOG3251 Golgi SNAP receptor co 28.1 2E+02 0.0044 26.1 6.4 56 90-145 129-184 (213)
79 PF00804 Syntaxin: Syntaxin; 27.8 2.2E+02 0.0048 21.1 6.0 28 225-252 10-37 (103)
80 PRK11027 hypothetical protein; 27.4 1.1E+02 0.0023 25.1 4.1 32 46-81 8-39 (112)
81 TIGR01005 eps_transp_fam exopo 26.5 4.7E+02 0.01 27.6 9.9 69 74-142 325-393 (754)
82 KOG3894 SNARE protein Syntaxin 26.1 6E+02 0.013 24.5 9.9 77 69-145 208-287 (316)
83 PRK04654 sec-independent trans 25.4 4.1E+02 0.0089 24.1 7.9 26 230-255 28-53 (214)
84 PF05565 Sipho_Gp157: Siphovir 25.4 3E+02 0.0066 23.4 6.9 58 223-280 34-91 (162)
85 PF12718 Tropomyosin_1: Tropom 25.1 4.1E+02 0.0089 22.2 10.2 21 88-108 50-70 (143)
86 PF06120 Phage_HK97_TLTM: Tail 24.6 2.4E+02 0.0051 27.0 6.6 39 240-278 71-109 (301)
87 KOG3208 SNARE protein GS28 [In 24.5 2.2E+02 0.0047 26.1 5.9 51 234-284 154-204 (231)
88 PF05103 DivIVA: DivIVA protei 24.4 70 0.0015 25.6 2.7 59 224-282 20-78 (131)
89 PF10152 DUF2360: Predicted co 24.2 1.9E+02 0.004 24.5 5.3 44 107-150 6-53 (148)
90 PF05335 DUF745: Protein of un 24.0 5.1E+02 0.011 22.9 8.4 58 225-282 112-169 (188)
91 PF00517 GP41: Retroviral enve 23.5 3.1E+02 0.0067 24.4 6.8 53 102-154 19-77 (204)
92 KOG0994 Extracellular matrix g 23.5 6E+02 0.013 29.2 9.9 56 86-144 1562-1617(1758)
93 PF06009 Laminin_II: Laminin D 23.2 27 0.00059 29.0 0.0 58 226-283 49-109 (138)
94 PF03670 UPF0184: Uncharacteri 22.3 1.6E+02 0.0035 22.8 4.1 20 225-244 29-48 (83)
95 PHA03395 p10 fibrous body prot 22.1 2.1E+02 0.0045 22.4 4.6 47 225-271 14-63 (87)
96 PRK15396 murein lipoprotein; P 21.8 3.7E+02 0.0079 20.5 6.9 13 250-262 60-72 (78)
97 PRK15344 type III secretion sy 21.6 1.3E+02 0.0027 22.7 3.3 26 233-258 2-27 (71)
98 PHA03386 P10 fibrous body prot 21.6 2E+02 0.0042 22.8 4.4 45 225-273 15-59 (94)
99 COG2959 HemX Uncharacterized e 21.5 6.8E+02 0.015 24.8 9.0 51 95-145 74-124 (391)
100 PF05597 Phasin: Poly(hydroxya 21.5 4.8E+02 0.01 21.7 7.4 50 236-285 72-130 (132)
101 PF04568 IATP: Mitochondrial A 21.2 1.7E+02 0.0038 23.3 4.2 28 240-267 73-100 (100)
102 PF02321 OEP: Outer membrane e 21.1 4.2E+02 0.0091 20.9 8.3 57 87-143 129-185 (188)
103 PF00261 Tropomyosin: Tropomyo 20.6 6.2E+02 0.014 22.7 8.7 58 226-283 145-202 (237)
104 COG4942 Membrane-bound metallo 20.1 5.2E+02 0.011 25.9 8.1 58 224-281 40-97 (420)
No 1
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-44 Score=330.64 Aligned_cols=259 Identities=32% Similarity=0.443 Sum_probs=192.8
Q ss_pred CCCCCCCCCCCccchhhhhhcccCCCCCCCCCCCCCCCCCCccc-----cccccCcCCCCCccchhhHHHHHHHHHHHHH
Q 023155 12 KQKTVNPVAASDDECDKKAAIKPARRTSSEPVLITPDFSNDHKG-----RDHYKNDFRDSGGLENQSVQELENYAVYKAE 86 (286)
Q Consensus 12 ~~~~~n~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~q~vq~l~~~~~~~~q 86 (286)
+++..|+| +.+.++++.+++.+.- ....+|++++... ...++..+.++++.+++.+++|++++.++++
T Consensus 3 ~~~~~~~~-~~~e~~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~e~~~~~~ 75 (273)
T KOG3065|consen 3 RPSKNNAF-DTEEHSWRELALSQGL------MRGSNDRDDDYARVFAHSGQLDKMELVDSGEEEDEEVDELEQEIESTAQ 75 (273)
T ss_pred Cccccccc-ccchhhhHhhccchhh------hccCCCccccccccccchhhHHHhccccccccchHHHHHHHHHHhhhhh
Confidence 45678999 8888888888887711 1112344443211 1233666788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhcccccCCCCCccccCcCCCCCC
Q 023155 87 ETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGMFSKTWKPKKTRNIAGPLDT 166 (286)
Q Consensus 87 et~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks~F~~~~~~~k~~~~~~p~~~ 166 (286)
+|++||++||++|+|++++|++|++||++|+|||+|||.+||+|+.+|++++++|++|+++|+..|+|++++.+.+|...
T Consensus 76 eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~~g~~~~p~~~~~~~~p~e~ 155 (273)
T KOG3065|consen 76 ESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGLFGLLVKPFKKKRVREPTET 155 (273)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHhcccCCccccCCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999988888877666555443
Q ss_pred CCCCcccccchhhhhccCCCCCCC--CCCCCCCCCCCcchhhhhhhccchh-----hhhccccccchhhhhHHHHHHHHH
Q 023155 167 PDHSSKKGVNKGEREKLGVAPVPK--PRSAGRTPPPEPANAMQKVETGIYL-----RVIKTRWRKPKQDDALSDLSNILG 239 (286)
Q Consensus 167 ~~~~~k~~~~~eq~~~~g~~~~P~--~~~~~r~~~~~~~~~~~k~~~g~y~-----~~~~~d~~~~eqD~~Ld~Ls~~l~ 239 (286)
..... ..+.....+. ..+.+|. .....+.. +..... ..+.|+ ...++++.+++||+||++|+.+|+
T Consensus 156 ~~~~~-~~~~~~~~e~-~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~q~~~~~edeiD~NL~qis~~lg 228 (273)
T KOG3065|consen 156 SLKQR-SISKRRMDET-LIRAKPGELRSAAERSP-SEKRTG----LQGARSSLKARAYQTEPAAEDEIDENLDQLSAILG 228 (273)
T ss_pred ccccc-CcchhhhhHH-HHhhhcccccccccccc-cccCcC----CcccchhhhhhhhccCChhhhHHHhhHHHHHHHHH
Confidence 21100 0111111110 0111121 01111100 001111 112233 233566688899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhh
Q 023155 240 DLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLL 284 (286)
Q Consensus 240 ~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll 284 (286)
+||+||++||.||+.||++||+|+++||+++.+|+.+|+||++||
T Consensus 229 ~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl 273 (273)
T KOG3065|consen 229 RLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL 273 (273)
T ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999996
No 2
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.19 E-value=8.5e-11 Score=85.14 Aligned_cols=60 Identities=32% Similarity=0.583 Sum_probs=58.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 023155 226 KQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLG 285 (286)
Q Consensus 226 eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~ 285 (286)
++|+.|+.|+..|.+|+.|+.+||.||+.|+++||+|+..|+.+..+|..+++++.++++
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999875
No 3
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=98.95 E-value=4.1e-09 Score=74.68 Aligned_cols=59 Identities=32% Similarity=0.614 Sum_probs=56.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 225 PKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 225 ~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
.++++.|+.|+..|.+|+.|+.+||.||..|+++||+|+..++.+..++..+++++.++
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56889999999999999999999999999999999999999999999999999998763
No 4
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=2.4e-09 Score=97.26 Aligned_cols=63 Identities=37% Similarity=0.536 Sum_probs=60.3
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 023155 223 RKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLG 285 (286)
Q Consensus 223 ~~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~ 285 (286)
..++||+.|+.|+..+++||+||..||+||+.|+.+||++++.+|.++.+|..+++++.++.+
T Consensus 146 m~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 146 MLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999988764
No 5
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=98.79 E-value=2.1e-08 Score=72.09 Aligned_cols=61 Identities=33% Similarity=0.629 Sum_probs=58.0
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 223 RKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 223 ~~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
.+.++++.|+.|+..+.+|++|+.+|+.||..|+++||+|...++.+...+..++++++++
T Consensus 6 ~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 6 MEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 5778999999999999999999999999999999999999999999999999999988763
No 6
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=98.78 E-value=3.6e-08 Score=72.27 Aligned_cols=60 Identities=23% Similarity=0.396 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 86 EETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 86 qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
..+.++..+|.+++.|++++|.+|+..|..|+|+|.+++..|+.|...+..+.+.|+.|.
T Consensus 4 ~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 4 LRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999885
No 7
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=3.4e-07 Score=74.10 Aligned_cols=63 Identities=27% Similarity=0.446 Sum_probs=59.5
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 023155 223 RKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLG 285 (286)
Q Consensus 223 ~~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~ 285 (286)
.+.|-|+.++.|.+-|..||.++++||.||+.||++||.|+++.|.+...|.++..|++.+.+
T Consensus 30 le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar 92 (118)
T KOG3385|consen 30 LERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMAR 92 (118)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHh
Confidence 457789999999999999999999999999999999999999999999999999999988754
No 8
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=1.3e-05 Score=71.42 Aligned_cols=76 Identities=25% Similarity=0.356 Sum_probs=68.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 68 GLENQSVQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 68 ~~~~q~vq~l~~~~~~~~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
-..+|+...|+.- ..-+.|++....+-|+|-||+++|..-|..|+.|+|+|.|+...|-+++.+|.+|-|.|++|.
T Consensus 115 ~~~dQR~rLl~nT--erLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~ 190 (220)
T KOG1666|consen 115 ISADQRARLLQNT--ERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMT 190 (220)
T ss_pred cchhHHHHHHhhh--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHH
Confidence 3667888877653 356788999999999999999999999999999999999999999999999999999999986
No 9
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=97.60 E-value=0.00073 Score=48.15 Aligned_cols=61 Identities=25% Similarity=0.321 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhh
Q 023155 83 YKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNN 143 (286)
Q Consensus 83 ~~~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~ 143 (286)
...++......+....+.+..+++.....+|..|++.|++++.+++.+...++.+.+.|..
T Consensus 5 ~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 5 QMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 3456667788888899999999999999999999999999999999999999999998875
No 10
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=97.02 E-value=0.0062 Score=42.57 Aligned_cols=55 Identities=13% Similarity=0.235 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhh
Q 023155 89 TNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNN 143 (286)
Q Consensus 89 ~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~ 143 (286)
.+++......+.+...++.....++.+|++.|++|+.+++.+...+..+.+.|..
T Consensus 5 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 5 DEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666677788899999999999999999999999999999999999998864
No 11
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=96.82 E-value=0.0098 Score=46.42 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 86 EETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 86 qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
.+.+++.+|..+++.+.-+-+..|+.+|.+|.+.|..+...++.+...+..+.+.|+.|+
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~ 63 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLE 63 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999987
No 12
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=95.68 E-value=0.14 Score=36.45 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 95 CLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 95 ~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
.-..+.+-.+++..-..++.+|++.|++|+.+++.+...+..+-+.|..+
T Consensus 9 l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka 58 (63)
T PF05739_consen 9 LEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKA 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555677888899999999999999999999999999999999988764
No 13
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=94.70 E-value=0.18 Score=36.54 Aligned_cols=58 Identities=14% Similarity=0.279 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 023155 228 DDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLG 285 (286)
Q Consensus 228 D~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~ 285 (286)
..-|..-..++.....+|.++-.+|..|.+.|.++..+++.++..|...++=++++-+
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 3567777788889999999999999999999999999999999999999998887754
No 14
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=94.66 E-value=0.16 Score=46.58 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=58.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhcC
Q 023155 224 KPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLGK 286 (286)
Q Consensus 224 ~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~k 286 (286)
...||+-.++|......||.-++.|+.-|..-++.|++....+|.+-..|..++.|++...+|
T Consensus 162 ~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~ 224 (251)
T PF09753_consen 162 RNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSK 224 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456888999999999999999999999999999999999999999999999999999987653
No 15
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.57 E-value=0.55 Score=44.48 Aligned_cols=55 Identities=16% Similarity=0.339 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 229 DALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 229 ~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
+++-.|...|..|+.|=++|...++.|-++||+|+..|..+..-+..++..+++-
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kA 260 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKA 260 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999999999999999999999999998888754
No 16
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=89.49 E-value=1.4 Score=41.27 Aligned_cols=60 Identities=20% Similarity=0.387 Sum_probs=55.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 224 KPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 224 ~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
..+-|+++..|..+|-.|..+=.+||.=|-+|-.++|+|+..++.+.+.++.|++.+.+.
T Consensus 190 ~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA 249 (283)
T COG5325 190 ITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKA 249 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHh
Confidence 345588999999999999999999999999999999999999999999999999998875
No 17
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.84 E-value=8.8 Score=35.95 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhh
Q 023155 84 KAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNN 143 (286)
Q Consensus 84 ~~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~ 143 (286)
..++-..+.++.=+-+.|-.++=..=..+.++||++++.||.+++....++..|.++|..
T Consensus 174 ~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~k 233 (269)
T KOG0811|consen 174 LIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRK 233 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556677777788889999999999999999999999999999999999999888863
No 18
>PRK00846 hypothetical protein; Provisional
Probab=80.93 E-value=9.8 Score=29.00 Aligned_cols=54 Identities=9% Similarity=0.042 Sum_probs=48.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHH
Q 023155 224 KPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGAN 277 (286)
Q Consensus 224 ~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n 277 (286)
...+++.|++|..-|.-+-..-..++..|-.|...|+.+...+..+..+++.+.
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455788999999999999999999999999999999999999999999888764
No 19
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.90 E-value=17 Score=34.56 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHh
Q 023155 97 KIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLN 142 (286)
Q Consensus 97 rla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~ 142 (286)
+.+.|-.++=..-++.-..|||+|++||.++.....+...|..+|+
T Consensus 213 ksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~ 258 (297)
T KOG0810|consen 213 KSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLK 258 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666677777778889999999999999999988888877776
No 20
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.65 E-value=7.4 Score=36.44 Aligned_cols=61 Identities=20% Similarity=0.342 Sum_probs=55.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhh
Q 023155 224 KPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLL 284 (286)
Q Consensus 224 ~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll 284 (286)
.++-++.+..|...|..|..|=.++|.=+.+|-+++|.|+..|+.+...+..++..+.+-.
T Consensus 175 ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~ 235 (269)
T KOG0811|consen 175 IEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAA 235 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888999999999999999999999999999999999999999999999988754
No 21
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.54 E-value=4 Score=38.58 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=57.3
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 220 TRWRKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 220 ~d~~~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
+++.-.+=+....+|..+|..|..+=.+|+.=|-.|--.||+|+..++.+..++..+.+.+.|.
T Consensus 209 ~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KA 272 (305)
T KOG0809|consen 209 NEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKA 272 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHH
Confidence 3444556678899999999999999999999999999999999999999999999999988764
No 22
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=78.13 E-value=16 Score=34.31 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 100 ENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 100 ~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
.|-.++=..--.-..+||++.+||+-+++.+..+++-|.+.|....
T Consensus 205 ~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~ 250 (283)
T COG5325 205 YELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAP 250 (283)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhH
Confidence 3444444333344579999999999999999999999999887653
No 23
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.32 E-value=40 Score=32.00 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHH-Hhhhccc
Q 023155 89 TNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQ-LNNLGGM 147 (286)
Q Consensus 89 ~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~-L~~Lks~ 147 (286)
..+.++.=..+-|--.+-..-+.|..+|||-+.||+.++|++.-+..-|... |+.+..|
T Consensus 226 ~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~v 285 (311)
T KOG0812|consen 226 AKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERV 285 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHh
Confidence 3444555555666667777788889999999999999999999999999864 4444433
No 24
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=76.31 E-value=20 Score=29.83 Aligned_cols=62 Identities=15% Similarity=0.311 Sum_probs=54.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 023155 224 KPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLG 285 (286)
Q Consensus 224 ~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~ 285 (286)
..++-..|+.|...|.....+...|.+|+..=-.-|++|..+++.+...|....-++..|-.
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677888999999999999999999999999999999999999999999999988887754
No 25
>PRK00736 hypothetical protein; Provisional
Probab=74.17 E-value=22 Score=26.19 Aligned_cols=49 Identities=16% Similarity=0.339 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHH
Q 023155 228 DDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGA 276 (286)
Q Consensus 228 D~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~ 276 (286)
++.|.+|..-|.-+-..--.++..|-+|.+.|+.|...+..+..++...
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568888888888888889999999999999999999988888888654
No 26
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=74.04 E-value=17 Score=26.79 Aligned_cols=51 Identities=14% Similarity=0.277 Sum_probs=39.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHH
Q 023155 227 QDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGAN 277 (286)
Q Consensus 227 qD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n 277 (286)
+++.|.+|..-|.-+-..-..++..|-.|...|+.|...+..+..+|....
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456778888888888888888888899999999999988888888887754
No 27
>PRK04325 hypothetical protein; Provisional
Probab=72.57 E-value=25 Score=26.37 Aligned_cols=52 Identities=21% Similarity=0.346 Sum_probs=44.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHH
Q 023155 225 PKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGA 276 (286)
Q Consensus 225 ~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~ 276 (286)
..+++.|.+|..-|.-+-..--.++..|-.|...|+.|...+..+..+|...
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778999999999999999999999999999999998888888887664
No 28
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=72.00 E-value=48 Score=26.65 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHH
Q 023155 229 DALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRV 273 (286)
Q Consensus 229 ~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri 273 (286)
+.++.|...|..+-..=..+..|++.|.+.|+.|..-....+.||
T Consensus 53 eqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 53 EQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344454545444444555555555555555554444444443
No 29
>PRK02119 hypothetical protein; Provisional
Probab=71.64 E-value=25 Score=26.29 Aligned_cols=53 Identities=9% Similarity=0.239 Sum_probs=45.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHH
Q 023155 224 KPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGA 276 (286)
Q Consensus 224 ~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~ 276 (286)
...+++.|.+|..-|.-+-..--.++..|-+|.+.|+.+...+..+..+|...
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567889999999999999999999999999999999999888888887654
No 30
>PRK04406 hypothetical protein; Provisional
Probab=71.35 E-value=25 Score=26.55 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=45.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHH
Q 023155 226 KQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGA 276 (286)
Q Consensus 226 eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~ 276 (286)
.+++.|.+|..-|.-+-..--.++..|-.|...|+.|...+..+..+|...
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477889999999999999999999999999999999999888888887654
No 31
>PRK00295 hypothetical protein; Provisional
Probab=71.29 E-value=30 Score=25.48 Aligned_cols=51 Identities=12% Similarity=0.162 Sum_probs=42.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHH
Q 023155 227 QDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGAN 277 (286)
Q Consensus 227 qD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n 277 (286)
+++.|.+|..-|.-+-..--.++..|-+|.+.|+.+...+..+..+|....
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345688888888888888889999999999999999988888888877653
No 32
>PRK02793 phi X174 lysis protein; Provisional
Probab=70.87 E-value=29 Score=25.86 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=43.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHH
Q 023155 227 QDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGA 276 (286)
Q Consensus 227 qD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~ 276 (286)
+++.|.+|..-|.-+-..--.++..|-+|...|+.+...+..+..+|...
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67788889999999999999999999999999999998888888887664
No 33
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.73 E-value=59 Score=29.90 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 104 EDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 104 e~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
.+|..-=.+|+.|+.=|+.-...+|.++.-|++..+.|..+.
T Consensus 166 ~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~ 207 (235)
T KOG3202|consen 166 GMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVN 207 (235)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444489999999999999999999999999999887665
No 34
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=70.17 E-value=16 Score=33.74 Aligned_cols=58 Identities=14% Similarity=0.285 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 023155 228 DDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLG 285 (286)
Q Consensus 228 D~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~ 285 (286)
-.+|-.|..++..|-.|=.+|.+++-+|.+.+|.|+..+..+...+...+..+.+-++
T Consensus 184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avk 241 (280)
T COG5074 184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVK 241 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHH
Confidence 4678888999999999999999999999999999999999999999988888776653
No 35
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=69.52 E-value=22 Score=32.49 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=51.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 227 QDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 227 qD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
|++-...|....+-||.+|++-++-|+.-|..|.+...-+|.+...+..++.|+.+-
T Consensus 153 QeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y 209 (244)
T KOG2678|consen 153 QEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKY 209 (244)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Confidence 455566788899999999999999999999999999999999999999999998764
No 36
>PF00835 SNAP-25: SNAP-25 family; InterPro: IPR000928 SNAP-25 (synaptosome-associated protein 25 kDa) proteins are components of SNARE complexes, which are proposed to account for the specificity of membrane fusion and to directly execute fusion by forming a tight complex (the SNARE or core complex) that brings the synaptic vesicle and plasma membranes together. The SNAREs constitute a large family of proteins that are characterised by 60-residue sequences known as SNARE motifs (IPR000727 from INTERPRO), which have a high propensity to form coiled coils and often precede carboxy-terminal transmembrane regions. The synaptic core complex is formed by four SNARE motifs (two from SNAP25 and one each from synaptobrevin and syntaxin 1) that are unstructured in isolation but form a parallel four-helix bundle on assembly. The crystal structure of the core complex revealed that the helix bundle is highly twisted and contains several salt bridges on the surface, as well as layers of interior hydrophobic residues. However, a polar layer in the centre of the complex is formed by three glutamines (two from SNAP25 and one from syntaxin 1) and one arginine (from synaptobrevin) []. Members of the SNAP-25 family contain a cluster of cysteine residues that can be palmitoylated for membrane attachment [].; PDB: 3RL0_H 3RK2_D 3RK3_D 1KIL_D 1SFC_L 3HD7_H 3IPD_H 1L4A_D.
Probab=69.10 E-value=1.4 Score=32.01 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=7.0
Q ss_pred CcccccchhhhhccCCCCCCCCCCC-CCCCCCCcchhhhhhhccchhhhhcccc
Q 023155 170 SSKKGVNKGEREKLGVAPVPKPRSA-GRTPPPEPANAMQKVETGIYLRVIKTRW 222 (286)
Q Consensus 170 ~~k~~~~~eq~~~~g~~~~P~~~~~-~r~~~~~~~~~~~k~~~g~y~~~~~~d~ 222 (286)
.++.+|+...+...+++.||..++. .+.+. . ..+.|+||.|++||+
T Consensus 15 ~yk~tw~~n~d~g~Vvs~qP~~~v~~~~~~~----s---~~~sg~YI~RiTnDA 61 (61)
T PF00835_consen 15 AYKQTWGPNDDDGKVVSSQPRSRVMDDRNQV----S---AGPSGGYITRITNDA 61 (61)
T ss_dssp -------------------------------------------SSSS--SS-SH
T ss_pred hhhhccCCCcccCccccCCCCCccccCCCcc----c---ccCCCCcceeccCCC
Confidence 3445666555521257778843322 12221 1 136789999999875
No 37
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=67.83 E-value=37 Score=27.27 Aligned_cols=64 Identities=11% Similarity=0.165 Sum_probs=44.4
Q ss_pred cccccchhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 220 TRWRKPKQDDALS--DLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 220 ~d~~~~eqD~~Ld--~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
++.+..+++.-|+ ..+.-|..|-..-...|++|..+...+.....-.+.....|...++|+.+|
T Consensus 35 ~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 35 NNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDKM 100 (102)
T ss_dssp HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4446667777777 555566666666666777777777777777777777777777888887765
No 38
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.26 E-value=4.6 Score=39.59 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCCCccchhh
Q 023155 9 AKPKQKTVNPVAASDDECDK 28 (286)
Q Consensus 9 ~~~~~~~~n~f~~~~~~~~~ 28 (286)
-++..+++|||||.+|+..|
T Consensus 445 gkveepsnnpffdeedeeed 464 (637)
T KOG4421|consen 445 GKVEEPSNNPFFDEEDEEED 464 (637)
T ss_pred ccccCCCCCccccchhhhhh
Confidence 33446788999987775444
No 39
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.44 E-value=29 Score=32.62 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 91 SVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 91 ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
-+.-.-.++..-.-.|..+=.+|..|-++|+||+..+|..+..+..+.+.++.|
T Consensus 219 NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kL 272 (273)
T KOG3065|consen 219 NLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKL 272 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhc
Confidence 334444566667777888889999999999999999999999998888777654
No 40
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=57.80 E-value=41 Score=27.60 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=37.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 225 PKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 225 ~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
..+..+|..|...|..|..+-..+++..+....+=+.|+..++.+.......+.+++.|
T Consensus 9 ~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l 67 (151)
T cd00179 9 EEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKEL 67 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777776333444555555555555555555555543
No 41
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=56.73 E-value=25 Score=27.19 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=11.2
Q ss_pred HHHHHhhHhhhhhhHHhhhHHHH
Q 023155 252 LDRQNKSLDHLDADVDELNSRVK 274 (286)
Q Consensus 252 ld~QN~~LD~i~~kvd~~~~ri~ 274 (286)
||.=|--||.|..+.|.+..+|.
T Consensus 35 LD~Lns~LD~LE~rnD~l~~~L~ 57 (83)
T PF03670_consen 35 LDQLNSCLDHLEQRNDHLHAQLQ 57 (83)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH
Confidence 33334445555555555555444
No 42
>PF15456 Uds1: Up-regulated During Septation
Probab=56.43 E-value=1.1e+02 Score=25.19 Aligned_cols=75 Identities=17% Similarity=0.263 Sum_probs=53.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhhHHHHHHHhhHHhHhhH
Q 023155 69 LENQSVQELENYAVYKAEETTNSVNNCLKIAENIREDATKTL---------------DMLHQQGEQIHRTHNMVTDTEKD 133 (286)
Q Consensus 69 ~~~q~vq~l~~~~~~~~qet~~ST~r~Lrla~Esee~G~~Tl---------------~~L~~QgEQL~rte~~LD~I~~d 133 (286)
+.-++|++|+.+. ..-..=+.++++-|.+-.-.++. ...+ ..+..|.|.|.-.++..|+...+
T Consensus 19 Ls~eEVe~LKkEl-~~L~~R~~~lr~kl~le~k~RdA-a~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~e 96 (124)
T PF15456_consen 19 LSFEEVEELKKEL-RSLDSRLEYLRRKLALESKIRDA-AHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQE 96 (124)
T ss_pred cCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHH
Confidence 4457888888877 44455556666666644444442 2223 34678999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 023155 134 LSKGEKQLNNLG 145 (286)
Q Consensus 134 L~~aek~L~~Lk 145 (286)
|-.++..+..+.
T Consensus 97 L~~le~R~~~~~ 108 (124)
T PF15456_consen 97 LWKLENRLAEVR 108 (124)
T ss_pred HHHHHHHHHHHH
Confidence 999998777654
No 43
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.32 E-value=62 Score=29.56 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 89 TNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 89 ~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
..+..+|.+++.|.-+.|.+|.+.|+.|+--|..+...+-.|-.-.=.---+|..|
T Consensus 148 ~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kI 203 (231)
T KOG3208|consen 148 HDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKI 203 (231)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHH
Confidence 35788999999999999999999999999999999988877655444333344444
No 44
>COG1538 TolC Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
Probab=54.66 E-value=72 Score=31.34 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhccc
Q 023155 83 YKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGM 147 (286)
Q Consensus 83 ~~~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks~ 147 (286)
...++++...+..+.+++.--+.|..|...+.+..-+|..++..+-....++..+...|..|-|.
T Consensus 171 ~~a~~~~~~~~~~~~~~~~r~~~G~~~~~dv~qa~a~~~~a~~~l~~~~~~~~~a~~~L~~L~G~ 235 (457)
T COG1538 171 ALAEETLAAAEEQLELAEKRYDAGLATRLDVLQAEAQLASARAQLAAAQAQLAQARNALARLLGL 235 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC
Confidence 45788888999999999999999999999999999999999999999999999999999888644
No 45
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.18 E-value=52 Score=31.24 Aligned_cols=56 Identities=16% Similarity=0.443 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhh
Q 023155 229 DALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLL 284 (286)
Q Consensus 229 ~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll 284 (286)
..+..|+..|..|.++=..+..=|.+|.+.+-+|++.||..+..|..+..-|.|-+
T Consensus 227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~ 282 (311)
T KOG0812|consen 227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYF 282 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHH
Confidence 34555777777777777777777999999999999999999999999987776543
No 46
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=53.88 E-value=93 Score=24.38 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=36.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHH
Q 023155 225 PKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARH 282 (286)
Q Consensus 225 ~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~k 282 (286)
.++.+.+..|+..+..|+.. ..+|..+-.+||.|+..|..+..-+.....-.++
T Consensus 38 ~~~~~~~~~l~~~~~~l~~k----~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~ 91 (99)
T PF10046_consen 38 KKMKDIAAGLEKNLEDLNQK----YEELQPYLQQIDQIEEQVTELEQTVYELDEYSKE 91 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777664 4677888888888887777766655554444433
No 47
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=53.79 E-value=1.1e+02 Score=24.05 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=10.8
Q ss_pred hHhhhhhhHHhhhHHHHHHHHHHH
Q 023155 258 SLDHLDADVDELNSRVKGANQRAR 281 (286)
Q Consensus 258 ~LD~i~~kvd~~~~ri~~~n~r~~ 281 (286)
.+..|..-|+.++.-....-.|++
T Consensus 74 ~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444
No 48
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=50.67 E-value=78 Score=31.70 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHH-----HHHhhhcccc
Q 023155 97 KIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGE-----KQLNNLGGMF 148 (286)
Q Consensus 97 rla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~ae-----k~L~~Lks~F 148 (286)
..|+.....+..++.||..|.-||.+.|.+++.|.++..+=. +.|..|+..|
T Consensus 62 svaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ihkekvArreIg~lttnk 118 (483)
T KOG2546|consen 62 SVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVDIHKEKVARREIGNLTTNK 118 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheecchhhhhhhccceeecc
Confidence 457999999999999999999999999999999999886543 3444554333
No 49
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=50.27 E-value=1.9e+02 Score=26.91 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 91 SVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 91 ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
+.|+.|..+.+.--.+.=-+..+.+.++.|..+...|..| ..+..++..|..|
T Consensus 85 ~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i-~~v~~~~~~l~~l 137 (291)
T PF10475_consen 85 NLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQI-KTVQQTQSRLQEL 137 (291)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4444444444333332233345556666666777777666 4555566555555
No 50
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=49.79 E-value=75 Score=24.69 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=20.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023155 224 KPKQDDALSDLSNILGDLKGMAVDMGSELD 253 (286)
Q Consensus 224 ~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld 253 (286)
-+++..+|..|...|..|..+-..++...+
T Consensus 10 v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~ 39 (117)
T smart00503 10 VEEIRANIQKISQNVAELQKLHEELLTPPD 39 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 345667777777777777777776665554
No 51
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=49.48 E-value=90 Score=24.28 Aligned_cols=44 Identities=9% Similarity=0.248 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHH
Q 023155 231 LSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVK 274 (286)
Q Consensus 231 Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~ 274 (286)
+++|+.-|..|+.-.-.+..++..=...++.-.+.+.+.+.||+
T Consensus 26 vdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 26 VNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444444444444444444444444444444444444443
No 52
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=49.20 E-value=1.1e+02 Score=22.99 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 97 KIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 97 rla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
.-+.++..+...++..|.+-||.|+..+...+.+......=.+.-+.|+
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~ 58 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLK 58 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4457888899999999999999999999998888887766666555554
No 53
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=46.88 E-value=50 Score=25.08 Aligned_cols=49 Identities=27% Similarity=0.427 Sum_probs=35.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHhhHhhhhhhHHhhhHHH
Q 023155 225 PKQDDALSDLSNILGDLKGMAVD---MGSELDRQNKSLDHLDADVDELNSRV 273 (286)
Q Consensus 225 ~eqD~~Ld~Ls~~l~~Lk~~A~~---mg~Eld~QN~~LD~i~~kvd~~~~ri 273 (286)
...++..+.|...|..|+.---. |+.-|+.|...|+.|+.+|.....-+
T Consensus 14 k~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 14 KAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45567777777777766665444 77888888888888888887766543
No 54
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=46.73 E-value=1.3e+02 Score=23.02 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=48.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 023155 227 QDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLG 285 (286)
Q Consensus 227 qD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~ 285 (286)
..+.|......+..--..+..--.+|+.|+..|..+++..+.....|....+-+++|-+
T Consensus 6 vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r 64 (92)
T PF03908_consen 6 VTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLER 64 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777778888899999999999999999999999888887777643
No 55
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=46.65 E-value=1.5e+02 Score=25.93 Aligned_cols=61 Identities=21% Similarity=0.362 Sum_probs=51.8
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 223 RKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 223 ~~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
...+....|..|-..+..|+.-......+|...++.+..|.+....+...+..+..++.+|
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888888899999999999999999999999999999999999999998888876
No 56
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=45.20 E-value=45 Score=25.13 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=14.5
Q ss_pred HHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 254 RQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 254 ~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
.|+.+|.||-..|++++.-|...|+.+..|
T Consensus 8 ~Q~~LLsRIi~NvekLNEsv~~lN~~l~eI 37 (72)
T PF08650_consen 8 QQSNLLSRIIGNVEKLNESVAELNQELEEI 37 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554444444444443
No 57
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=44.37 E-value=89 Score=22.43 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 023155 227 QDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLD 263 (286)
Q Consensus 227 qD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~ 263 (286)
+....+.|+.-|..|+.=+...-.|..+.|..||++.
T Consensus 15 L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 15 LNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3445555555555555555555555666666555553
No 58
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=42.00 E-value=86 Score=23.99 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 228 DDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 228 D~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
..+|..|...|..|..+...||+--|.+ ++-+.|...+..+...+...+..+++|
T Consensus 2 s~~l~~in~~v~~l~k~~~~lGt~~Ds~-~lR~~i~~~~~~~~~l~k~~~~~l~~l 56 (102)
T PF14523_consen 2 SSNLFKINQNVSQLEKLVNQLGTPRDSQ-ELREKIHQLIQKTNQLIKEISELLKKL 56 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SSS--H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhCCccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888764443 344555555555555555555555544
No 59
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=41.33 E-value=1.7e+02 Score=22.70 Aligned_cols=55 Identities=20% Similarity=0.343 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhcC
Q 023155 232 SDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLGK 286 (286)
Q Consensus 232 d~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~k 286 (286)
+++..-|.+|..-=--+..||+..-..+..+..-...+..+|..+...++-+|.+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~r 89 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLDR 89 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444444444444445888999999999999999999999999999999988864
No 60
>PRK11637 AmiB activator; Provisional
Probab=40.65 E-value=3.2e+02 Score=26.81 Aligned_cols=77 Identities=9% Similarity=0.144 Sum_probs=41.1
Q ss_pred chhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhcc
Q 023155 70 ENQSVQELENYAVYKAEETT---NSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGG 146 (286)
Q Consensus 70 ~~q~vq~l~~~~~~~~qet~---~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks 146 (286)
..++++.+++++....++.. ........-+...+.--..+-..|.....+|..++..++..+..+...++.|.....
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666544333322 222233333333444444445555666666667777777777777666666665553
No 61
>PRK09837 copper/silver efflux system outer membrane protein CusC; Provisional
Probab=40.39 E-value=1.4e+02 Score=29.23 Aligned_cols=64 Identities=20% Similarity=0.201 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhccc
Q 023155 84 KAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGM 147 (286)
Q Consensus 84 ~~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks~ 147 (286)
..++.++..+..+.+++.--+.|..+...+....-+|.+++..+..+..++..+...|.-|-|.
T Consensus 186 l~~~~~~~~~~~l~~~~~r~~~G~~~~~dv~~a~~~l~~~~~~l~~~~~~~~~a~~~L~~LlG~ 249 (461)
T PRK09837 186 IAEETLRNYQQSYAFVEKQLLTGSSNVLALEQARGVIESTRADIAKRQGELAQANNALQLLLGS 249 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCC
Confidence 4666777788888888888888888888899999999999999999999999999999887764
No 62
>PRK09915 putative outer membrane efflux protein MdtP; Provisional
Probab=40.28 E-value=1.3e+02 Score=29.80 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhccc
Q 023155 84 KAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGM 147 (286)
Q Consensus 84 ~~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks~ 147 (286)
..+++++..+..++++..--+.|..|...+.+..-++.+++..+..+..++..+...|..|-|.
T Consensus 206 l~~~~~~~~~~~~~~~~~r~~~G~~s~~dv~~a~~~l~~a~~~l~~~~~~~~~a~~~L~~LlG~ 269 (488)
T PRK09915 206 LLEQTRDVIDYAVKAHQSKVAHGLEAQVPFHGARAQILAVDKQIAAVKGQITETRESLRALIGA 269 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3566666777777777777888999999999999999999999999999999999999887653
No 63
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.69 E-value=1e+02 Score=29.61 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=47.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 023155 227 QDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLG 285 (286)
Q Consensus 227 qD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~ 285 (286)
|.+....+...|-.+-.|-..|.+-|-.|...||.|.+.+..+...|...|.-++++..
T Consensus 230 ~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~ 288 (316)
T KOG3894|consen 230 LLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKR 288 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHH
Confidence 34444445555555556667899999999999999999999999999999999998753
No 64
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=38.42 E-value=1.5e+02 Score=21.28 Aligned_cols=47 Identities=13% Similarity=0.240 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHH
Q 023155 230 ALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGA 276 (286)
Q Consensus 230 ~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~ 276 (286)
.+++|+.-|..|+.---.|..+|..=..-+....+.+.+++.||...
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666665555555555443333334444444444444443
No 65
>PRK11637 AmiB activator; Provisional
Probab=38.10 E-value=1.6e+02 Score=28.98 Aligned_cols=54 Identities=17% Similarity=0.260 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhh
Q 023155 231 LSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLL 284 (286)
Q Consensus 231 Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll 284 (286)
|..|..-|..+..--..+..+|...+..|+.+...+..+..+|......+..++
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334445555555555555555555555555544444443
No 66
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=38.07 E-value=1.7e+02 Score=21.94 Aligned_cols=53 Identities=19% Similarity=0.349 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHH
Q 023155 229 DALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRAR 281 (286)
Q Consensus 229 ~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~ 281 (286)
+.|..|..-|...+..-..-=..|-+--+.|+.|.++++.+...=..-.+..+
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~ 55 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAK 55 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44555555555555544444444445556677777777666554444433333
No 67
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=38.02 E-value=1.9e+02 Score=24.51 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHHHHHHhhHHhHhhHHHHHHHHH
Q 023155 80 YAVYKAEETTNSVNNCLKIAENIREDATKTLDMLHQ-------QGEQIHRTHNMVTDTEKDLSKGEKQL 141 (286)
Q Consensus 80 ~~~~~~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~-------QgEQL~rte~~LD~I~~dL~~aek~L 141 (286)
+++...+.|..++...-.++.+..+....+...+.. ..+.+..+...+..|...+......+
T Consensus 83 eir~LA~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i 151 (213)
T PF00015_consen 83 EIRKLAEQTSESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSI 151 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhh
Confidence 344556666666666666666665554444333333 33344444444444444443333333
No 68
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=36.91 E-value=1.8e+02 Score=26.90 Aligned_cols=30 Identities=13% Similarity=0.333 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhHhhhhhhHHhhhHHHHHH
Q 023155 247 DMGSELDRQNKSLDHLDADVDELNSRVKGA 276 (286)
Q Consensus 247 ~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~ 276 (286)
+|-..|+....-|++|...++.+...|...
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 69
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=34.72 E-value=2e+02 Score=21.69 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 228 DDALSDLSNILGDLKGMAVDM-GSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 228 D~~Ld~Ls~~l~~Lk~~A~~m-g~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
-..|+.+...|..+...-... --.+.....-|.+|-..|..+..++....+|+.+|
T Consensus 34 ~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 34 LQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455444444422211 12233377788888889999999999998888876
No 70
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=31.43 E-value=2.7e+02 Score=22.11 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHhhHHhHhhHHHHHHHHHhhhccccc
Q 023155 91 SVNNCLKIAENIREDATKTLDMLHQQGEQIH--RTHNMVTDTEKDLSKGEKQLNNLGGMFS 149 (286)
Q Consensus 91 ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~--rte~~LD~I~~dL~~aek~L~~Lks~F~ 149 (286)
.-...+++-....+.....+..-..+..+.. .....++.+..+++.+.....-|+++|+
T Consensus 22 v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q 82 (106)
T PF05837_consen 22 VEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQ 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433333333333 4556777788888888888888888885
No 71
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=31.26 E-value=1.5e+02 Score=25.02 Aligned_cols=48 Identities=17% Similarity=0.296 Sum_probs=32.9
Q ss_pred chhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHhhHhhhhhhHHhhhHH
Q 023155 225 PKQDDALSDLSNILGDLKG----MAVDMGSELDRQNKSLDHLDADVDELNSR 272 (286)
Q Consensus 225 ~eqD~~Ld~Ls~~l~~Lk~----~A~~mg~Eld~QN~~LD~i~~kvd~~~~r 272 (286)
...+..||+++..+.-|-. +-..-..=|..+|.++|+++.|++.++.-
T Consensus 27 kkv~~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~tld~v 78 (139)
T COG4768 27 KKVSKTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQGKVATLDPV 78 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHH
Confidence 4456777777766655443 34444445788999999999998887653
No 72
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=30.55 E-value=2.9e+02 Score=24.50 Aligned_cols=68 Identities=13% Similarity=0.242 Sum_probs=55.3
Q ss_pred hhhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 216 RVIKTRWRKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKS--LDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 216 ~~~~~d~~~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~--LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
|+..++++...+|...-.|..-+..|+.-+..|-.||..=..+ +..|...+..+.--+.....|+.+|
T Consensus 73 F~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 73 FDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred hcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777888889999999999999999999999876655 4678888888888888888888765
No 73
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.29 E-value=2.5e+02 Score=26.87 Aligned_cols=49 Identities=14% Similarity=0.171 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 97 KIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 97 rla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
.-++|-.++-..--.+..+||-+++||+=+++.+...++.|.|.|....
T Consensus 225 ~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe 273 (305)
T KOG0809|consen 225 ESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAE 273 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHH
Confidence 3345555666666678899999999999999999999999999887654
No 74
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.87 E-value=2.2e+02 Score=20.35 Aligned_cols=38 Identities=8% Similarity=0.299 Sum_probs=24.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Q 023155 225 PKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHL 262 (286)
Q Consensus 225 ~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i 262 (286)
.+++..|..|+..|+.++.--..|..+|+.=++-+.+|
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777776666666665554444333
No 75
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=28.55 E-value=4.5e+02 Score=23.84 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 91 SVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 91 ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
=+.-++.||..-.+-+...-..|.+...-|.++...+|.--..|..+.+.|+.+-
T Consensus 168 L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~ 222 (251)
T PF09753_consen 168 LTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHS 222 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999988887664
No 76
>TIGR01845 outer_NodT efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined.
Probab=28.29 E-value=2.8e+02 Score=26.65 Aligned_cols=64 Identities=9% Similarity=0.120 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhccc
Q 023155 84 KAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGM 147 (286)
Q Consensus 84 ~~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks~ 147 (286)
..++.++...+.+.+++.--+.|..+...+....-++...+..+-.+..++..+...|.-|-|.
T Consensus 181 ~~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~l~~~~~~l~~~~~~~~~a~~~L~~Llg~ 244 (454)
T TIGR01845 181 VYHAALASRRKTLELTQKRYAAGVAAASDVRQAEAAVASAEAELPSLDVQIAQARNALAALLGK 244 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCC
Confidence 3555666777777777778888888888888999999999999999999999999988887653
No 77
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=28.18 E-value=3e+02 Score=26.17 Aligned_cols=55 Identities=15% Similarity=0.325 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 023155 228 DDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLG 285 (286)
Q Consensus 228 D~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~ 285 (286)
++.+.++...|..|....-+|=.-| +..+.+...+++.++.||..+..|+.+|-+
T Consensus 17 eEti~qi~~aL~~L~~v~~diF~rI---~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 17 EETILQIADALEYLDKVSNDIFSRI---SARVERNRERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556666666666666666654444 455667777888888888888888887753
No 78
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.12 E-value=2e+02 Score=26.09 Aligned_cols=56 Identities=14% Similarity=0.251 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 90 NSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 90 ~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
++..++=+.+.+.-+.|.+.++.|.+|+--|..|.+.+-.|-..|-.+...|.-|.
T Consensus 129 d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIe 184 (213)
T KOG3251|consen 129 DSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIE 184 (213)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 45667778889999999999999999999999999999998888888877776665
No 79
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=27.84 E-value=2.2e+02 Score=21.11 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=15.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023155 225 PKQDDALSDLSNILGDLKGMAVDMGSEL 252 (286)
Q Consensus 225 ~eqD~~Ld~Ls~~l~~Lk~~A~~mg~El 252 (286)
.++...|..|...|..|..+-..+-...
T Consensus 10 ~~i~~~i~~i~~~~~~l~~l~~~~l~~~ 37 (103)
T PF00804_consen 10 QEIREDIDKIKEKLNELRKLHKKILSSP 37 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3455666666666666665554444333
No 80
>PRK11027 hypothetical protein; Provisional
Probab=27.39 E-value=1.1e+02 Score=25.09 Aligned_cols=32 Identities=34% Similarity=0.567 Sum_probs=28.1
Q ss_pred CCCCCCCccccccccCcCCCCCccchhhHHHHHHHH
Q 023155 46 TPDFSNDHKGRDHYKNDFRDSGGLENQSVQELENYA 81 (286)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~vq~l~~~~ 81 (286)
+++|-|+ -.|-.||+-+|.++-.+-+.|++|.
T Consensus 8 ~krF~D~----knfPrGF~RsGdFTi~Ea~lLe~yG 39 (112)
T PRK11027 8 TKRFFDD----KNYPRGFSRSGDFTIKEAQLLERYG 39 (112)
T ss_pred ccccCCC----CCCCCCcccCCCcCHHHHHHHHHHH
Confidence 5678776 5799999999999999999999987
No 81
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=26.55 E-value=4.7e+02 Score=27.63 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHh
Q 023155 74 VQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLN 142 (286)
Q Consensus 74 vq~l~~~~~~~~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~ 142 (286)
+++|+..+.......+.+.++-+..+..-++.-.+.+..|..+-.++...+..+.....+...+++...
T Consensus 325 i~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~ 393 (754)
T TIGR01005 325 LADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYE 393 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHH
Confidence 333444443334444555555556666555566666666666666666677777777777777766543
No 82
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.05 E-value=6e+02 Score=24.47 Aligned_cols=77 Identities=18% Similarity=0.203 Sum_probs=51.7
Q ss_pred cchhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 69 LENQSVQELENYAVYK---AEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 69 ~~~q~vq~l~~~~~~~---~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
...+.||.++.+..+. .++-.+-.+-.=+-+-|+...-.--.+.+-.|.++|+.|+...+.+..+++.+-+-|+.++
T Consensus 208 ~s~e~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~ 287 (316)
T KOG3894|consen 208 LSKEQVQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAK 287 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 4446677777655433 3444444555555555555555555677889999999999988888888877777777665
No 83
>PRK04654 sec-independent translocase; Provisional
Probab=25.45 E-value=4.1e+02 Score=24.13 Aligned_cols=26 Identities=15% Similarity=-0.000 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023155 230 ALSDLSNILGDLKGMAVDMGSELDRQ 255 (286)
Q Consensus 230 ~Ld~Ls~~l~~Lk~~A~~mg~Eld~Q 255 (286)
-...|+..|+++|.+...+-+||++.
T Consensus 28 ~aRtlGk~irk~R~~~~~vk~El~~E 53 (214)
T PRK04654 28 AARFAGLWVRRARMQWDSVKQELERE 53 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555555444
No 84
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=25.39 E-value=3e+02 Score=23.41 Aligned_cols=58 Identities=12% Similarity=0.275 Sum_probs=48.7
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHH
Q 023155 223 RKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRA 280 (286)
Q Consensus 223 ~~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~ 280 (286)
...++++-++.+...+..|...+..+-.|+.+-...-..+..+++++...|..+...+
T Consensus 34 i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 34 IEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556778888899999999999999999999999999999999998888888776553
No 85
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=25.15 E-value=4.1e+02 Score=22.25 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023155 88 TTNSVNNCLKIAENIREDATK 108 (286)
Q Consensus 88 t~~ST~r~Lrla~Esee~G~~ 108 (286)
-++.+.--|.-+.+.-+.+..
T Consensus 50 eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 50 ELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 334444444444444433333
No 86
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=24.64 E-value=2.4e+02 Score=26.97 Aligned_cols=39 Identities=18% Similarity=0.406 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHH
Q 023155 240 DLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQ 278 (286)
Q Consensus 240 ~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~ 278 (286)
.|+...-.++..|..|++.|+.+..+++.+...|..-+.
T Consensus 71 ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~ 109 (301)
T PF06120_consen 71 QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQ 109 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666678888999999999999999988888865443
No 87
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.49 E-value=2.2e+02 Score=26.13 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhh
Q 023155 234 LSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLL 284 (286)
Q Consensus 234 Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll 284 (286)
=...+.++=.+|.+--.-+..|+..|..|+.++..+..|+-..|.=+.+|-
T Consensus 154 s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk 204 (231)
T KOG3208|consen 154 SIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIK 204 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHH
Confidence 344556667789999999999999999999999999999999888777764
No 88
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=24.43 E-value=70 Score=25.62 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=28.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHH
Q 023155 224 KPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARH 282 (286)
Q Consensus 224 ~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~k 282 (286)
..+.|.-|+.|...+..|..--..+..+|..-+..|..+......+...|..+.+....
T Consensus 20 ~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~ 78 (131)
T PF05103_consen 20 PDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADE 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHH
Confidence 45679999999999999987777777777777777777776666666655555444433
No 89
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=24.20 E-value=1.9e+02 Score=24.45 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=36.0
Q ss_pred HHHHHHHHHh----hHHHHHHHhhHHhHhhHHHHHHHHHhhhcccccC
Q 023155 107 TKTLDMLHQQ----GEQIHRTHNMVTDTEKDLSKGEKQLNNLGGMFSK 150 (286)
Q Consensus 107 ~~Tl~~L~~Q----gEQL~rte~~LD~I~~dL~~aek~L~~Lks~F~~ 150 (286)
+.|..-|.+= .++|.++++.|..|+..|..=|..|.+|-|+-..
T Consensus 6 ~~tv~fLN~F~~~cE~kL~~~e~~Lq~~E~~l~iLEaKL~SIpgLe~v 53 (148)
T PF10152_consen 6 VHTVQFLNRFASVCEEKLSDMEQRLQRLEATLNILEAKLSSIPGLEDV 53 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4566666655 4889999999999999999999999999876654
No 90
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=24.02 E-value=5.1e+02 Score=22.94 Aligned_cols=58 Identities=19% Similarity=0.235 Sum_probs=51.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHH
Q 023155 225 PKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARH 282 (286)
Q Consensus 225 ~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~k 282 (286)
.-+-.-|......|.....++.....||.++..+|+.-...|+.+...|..+...+.+
T Consensus 112 ~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~ 169 (188)
T PF05335_consen 112 ETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEK 169 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466788888899999999999999999999999999999999999999888776654
No 91
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=23.51 E-value=3.1e+02 Score=24.40 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHH----HHhhHHhHhhHHHHHHHHHhhhc--ccccCCCCC
Q 023155 102 IREDATKTLDMLHQQGEQIHR----THNMVTDTEKDLSKGEKQLNNLG--GMFSKTWKP 154 (286)
Q Consensus 102 see~G~~Tl~~L~~QgEQL~r----te~~LD~I~~dL~~aek~L~~Lk--s~F~~~~~~ 154 (286)
.-+.-.+.+.....|-+-|.. +++.+....+.+..-|+.|+..- +.+||.|+.
T Consensus 19 i~q~~~~ll~~~e~~~~lL~l~v~gik~~V~~L~aRV~alE~~l~dq~ll~~wGC~~k~ 77 (204)
T PF00517_consen 19 IVQQQSNLLRAQEAQQHLLQLTVWGIKQGVKQLQARVLALERYLKDQQLLNIWGCSGKQ 77 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SBSS-SSSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhHHHHHhcccCCCc
Confidence 334444555666666666663 33344447777777788777665 788887763
No 92
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.49 E-value=6e+02 Score=29.20 Aligned_cols=56 Identities=13% Similarity=0.225 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 86 EETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 86 qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
+.+.++++-+|..|.++...+..++..-. +-|.-+.+.|+.|...+.-||+.+.+.
T Consensus 1562 ~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~---~~~~~a~~~l~kv~~~t~~aE~~~~~a 1617 (1758)
T KOG0994|consen 1562 KGQAEDVVEALEEADVAQGEAQDAIQGAD---RDIRLAQQLLAKVQEETAAAEKLATSA 1617 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555778888888888777777665433 234445555666666666666555444
No 93
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=23.18 E-value=27 Score=29.01 Aligned_cols=58 Identities=19% Similarity=0.329 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh---hhhhHHhhhHHHHHHHHHHHHh
Q 023155 226 KQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDH---LDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 226 eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~---i~~kvd~~~~ri~~~n~r~~kl 283 (286)
.....|+.....|..|..++-.+-..|..-....+. |...+.++...|..|...+.+|
T Consensus 49 ~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~IrelI~qAR~~An~I 109 (138)
T PF06009_consen 49 DANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIRELIAQARDAANRI 109 (138)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 345666666666666666666666555555555555 6666666666666665555443
No 94
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=22.32 E-value=1.6e+02 Score=22.77 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=9.9
Q ss_pred chhhhhHHHHHHHHHHHHHH
Q 023155 225 PKQDDALSDLSNILGDLKGM 244 (286)
Q Consensus 225 ~eqD~~Ld~Ls~~l~~Lk~~ 244 (286)
..++..||.|...|..|..-
T Consensus 29 ~~ins~LD~Lns~LD~LE~r 48 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQR 48 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555544443
No 95
>PHA03395 p10 fibrous body protein; Provisional
Probab=22.11 E-value=2.1e+02 Score=22.41 Aligned_cols=47 Identities=23% Similarity=0.437 Sum_probs=33.6
Q ss_pred chhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHhhHhhhhhhHHhhhH
Q 023155 225 PKQDDALSDLSNILGDLKGMA---VDMGSELDRQNKSLDHLDADVDELNS 271 (286)
Q Consensus 225 ~eqD~~Ld~Ls~~l~~Lk~~A---~~mg~Eld~QN~~LD~i~~kvd~~~~ 271 (286)
...++-++.|...|..++.-- .+++.-|+.|...|+.|..+++....
T Consensus 14 kavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~d 63 (87)
T PHA03395 14 KAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITD 63 (87)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445666777777777665433 36777899999999999888887543
No 96
>PRK15396 murein lipoprotein; Provisional
Probab=21.83 E-value=3.7e+02 Score=20.49 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=5.9
Q ss_pred HHHHHHHhhHhhh
Q 023155 250 SELDRQNKSLDHL 262 (286)
Q Consensus 250 ~Eld~QN~~LD~i 262 (286)
.|..+=|..||++
T Consensus 60 ~eA~raN~RlDn~ 72 (78)
T PRK15396 60 DDAARANQRLDNQ 72 (78)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 97
>PRK15344 type III secretion system needle protein SsaG; Provisional
Probab=21.63 E-value=1.3e+02 Score=22.69 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023155 233 DLSNILGDLKGMAVDMGSELDRQNKS 258 (286)
Q Consensus 233 ~Ls~~l~~Lk~~A~~mg~Eld~QN~~ 258 (286)
+|+..++.|+++|..+|.++..+-..
T Consensus 2 ~i~~~~~~L~~~~~~~~q~vq~~m~a 27 (71)
T PRK15344 2 DIAQLVDMLSHMAHQAGQAINDKMNG 27 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 37788999999999999999886553
No 98
>PHA03386 P10 fibrous body protein; Provisional
Probab=21.57 E-value=2e+02 Score=22.82 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=33.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHH
Q 023155 225 PKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRV 273 (286)
Q Consensus 225 ~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri 273 (286)
...|.-.+.|-..|..|+.- ..-||.|..+|+.|+.+|....+-|
T Consensus 15 kavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~iL 59 (94)
T PHA03386 15 QEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSIL 59 (94)
T ss_pred HHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhc
Confidence 45567777777777777654 5569999999999999888766543
No 99
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=21.55 E-value=6.8e+02 Score=24.79 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 95 CLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 95 ~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
++..+.+.+.....+...+..|.++|.+.++.+..-..++..-++....|.
T Consensus 74 ~~~~aqe~q~l~~ql~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is 124 (391)
T COG2959 74 ALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATIS 124 (391)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 667777777777788888888888888888888777777777777666665
No 100
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=21.52 E-value=4.8e+02 Score=21.74 Aligned_cols=50 Identities=22% Similarity=0.378 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHhhHhhhh----hhHHhhhHHHHHHHHHHHHhhc
Q 023155 236 NILGDLKGMAVDMGSELDR-----QNKSLDHLD----ADVDELNSRVKGANQRARHLLG 285 (286)
Q Consensus 236 ~~l~~Lk~~A~~mg~Eld~-----QN~~LD~i~----~kvd~~~~ri~~~n~r~~kll~ 285 (286)
..++.++.-+..--..|+. =+..|.+|. .+++.+..||...+.++.+|-+
T Consensus 72 ~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 72 SRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444443333332 234455554 6777777788887777777754
No 101
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=21.25 E-value=1.7e+02 Score=23.29 Aligned_cols=28 Identities=21% Similarity=0.535 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhhHH
Q 023155 240 DLKGMAVDMGSELDRQNKSLDHLDADVD 267 (286)
Q Consensus 240 ~Lk~~A~~mg~Eld~QN~~LD~i~~kvd 267 (286)
.|+.|-..+..|+..|.+.|++++..++
T Consensus 73 qL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 73 QLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4555666778889999999999988765
No 102
>PF02321 OEP: Outer membrane efflux protein; InterPro: IPR003423 The OEP family (Outer membrane efflux protein) form trimeric channels that allow export of a variety of substrates in Gram negative bacteria. Each member of this family is composed of two repeats. The trimeric channel is composed of a 12 stranded all beta sheet barrel that spans the outer membrane, and a long all helical barrel that spans the periplasm. Examples include the Escherichia coli TolC outer membrane protein, which is required for proper expression of outer membrane protein genes; the Rhizobium nodulation protein; and the Pseudomonas FusA protein, which is involved in resistance to fusaric acid.; GO: 0005215 transporter activity, 0006810 transport; PDB: 3PIK_A 1YC9_A 3D5K_C 1WP1_B 2XMN_C 2WMZ_B 1EK9_B 2VDD_C 1TQQ_A 2VDE_B ....
Probab=21.10 E-value=4.2e+02 Score=20.91 Aligned_cols=57 Identities=23% Similarity=0.166 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhh
Q 023155 87 ETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNN 143 (286)
Q Consensus 87 et~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~ 143 (286)
+.+......+.+++..-+.|..+...|..-.-++..++..+..+..++..+.-.|..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~G~~~~~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~L~~ 185 (188)
T PF02321_consen 129 EQLELAKEQLEIAEKRYEAGLISELDLLQAQAQLLQAQLQLIQAQNDLQIALAQLKR 185 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444555555445555555555555555555555555544443
No 103
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=20.63 E-value=6.2e+02 Score=22.70 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 226 KQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 226 eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
+++..|..+++.|..|-.-......-.+.=-..|..|..++..+..|...+-+++.+|
T Consensus 145 eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~L 202 (237)
T PF00261_consen 145 ELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKL 202 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 104
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.13 E-value=5.2e+02 Score=25.90 Aligned_cols=58 Identities=10% Similarity=0.192 Sum_probs=35.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHH
Q 023155 224 KPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRAR 281 (286)
Q Consensus 224 ~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~ 281 (286)
.+++..+|..+...|...+.-...+..+|.++..-|..|+..+-.+...+...++++.
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 3445666666666666666666666777777776666666555544444444444443
Done!