Query 023155
Match_columns 286
No_of_seqs 229 out of 783
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:16:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l4a_C S-SNAP25 fusion protein 99.9 1.8E-23 6.1E-28 159.7 8.5 76 70-145 7-82 (83)
2 3b5n_C Protein transport prote 99.9 4.4E-22 1.5E-26 147.5 8.9 68 80-147 2-69 (70)
3 1n7s_C SNAP-25A; neuronal snar 99.8 1.2E-20 4.2E-25 143.0 11.2 76 70-145 3-78 (79)
4 1sfc_D Protein (SNAP-25B), pro 99.8 9.4E-20 3.2E-24 140.6 7.8 77 210-286 10-86 (87)
5 1l4a_D S-SNAP25 fusion protein 99.8 4.2E-20 1.4E-24 142.6 5.7 77 210-286 11-87 (87)
6 3b5n_D Protein transport prote 99.7 5.9E-18 2E-22 123.3 7.6 63 221-283 2-64 (64)
7 1nhl_A Synaptosomal-associated 99.7 1.2E-17 3.9E-22 117.9 7.3 54 91-144 1-54 (54)
8 1n7s_D SNAP-25A; neuronal snar 99.7 2.1E-17 7.2E-22 120.9 8.2 66 220-285 1-66 (66)
9 1gl2_D Syntaxin 8, vesicle tra 99.6 1.6E-15 5.6E-20 110.5 7.3 63 223-285 3-65 (65)
10 2nps_D Syntaxin-6; vesicle fus 99.6 5.1E-15 1.7E-19 112.7 7.2 64 223-286 13-76 (82)
11 1gl2_C VTI1B, vesicle transpor 99.4 4.7E-13 1.6E-17 97.6 8.3 61 85-145 4-64 (65)
12 2nps_C Vesicle transport throu 99.1 2.5E-10 8.4E-15 86.6 9.9 72 72-145 3-74 (81)
13 3hd7_B Syntaxin-1A; membrane p 96.9 0.0039 1.3E-07 49.2 8.5 60 224-283 16-75 (109)
14 2nps_B Syntaxin 13, vesicle-as 96.0 0.038 1.3E-06 40.0 8.4 56 228-283 5-60 (71)
15 1jth_B Syntaxin 1A; coiled-coi 95.9 0.046 1.6E-06 40.2 8.4 59 226-284 7-65 (77)
16 1gl2_B Syntaxin 7; membrane pr 95.8 0.06 2.1E-06 38.3 8.6 58 226-283 6-63 (65)
17 3b5n_B Protein SSO1; snare com 95.8 0.057 2E-06 38.9 8.4 58 227-284 8-65 (69)
18 1n7s_B Syntaxin 1A; neuronal s 95.6 0.087 3E-06 37.8 8.7 59 226-284 9-67 (68)
19 1sfc_B Protein (syntaxin 1A), 95.3 0.094 3.2E-06 39.1 8.4 60 225-284 17-76 (83)
20 3hd7_B Syntaxin-1A; membrane p 94.8 0.23 7.9E-06 38.9 9.8 48 97-144 28-75 (109)
21 1gl2_B Syntaxin 7; membrane pr 94.6 0.25 8.6E-06 35.0 8.6 47 97-143 16-62 (65)
22 2nps_B Syntaxin 13, vesicle-as 94.3 0.31 1.1E-05 35.1 8.7 48 97-144 13-60 (71)
23 3b5n_B Protein SSO1; snare com 94.1 0.41 1.4E-05 34.3 9.0 49 95-143 15-63 (69)
24 1n7s_B Syntaxin 1A; neuronal s 93.9 0.51 1.7E-05 33.6 9.0 47 97-143 19-65 (68)
25 1jth_B Syntaxin 1A; coiled-coi 93.4 0.63 2.1E-05 33.9 9.0 48 97-144 17-64 (77)
26 3b5n_D Protein transport prote 92.8 1.2 4.1E-05 31.6 9.4 49 96-144 16-64 (64)
27 1nhl_A Synaptosomal-associated 92.5 0.5 1.7E-05 32.4 6.9 47 236-282 7-53 (54)
28 1sfc_B Protein (syntaxin 1A), 92.3 1.5 5E-05 32.5 9.9 48 96-143 27-74 (83)
29 1n7s_C SNAP-25A; neuronal snar 90.7 1.7 5.8E-05 32.1 8.6 58 227-284 18-78 (79)
30 1gl2_C VTI1B, vesicle transpor 88.8 2.9 0.0001 29.5 8.3 57 228-284 8-64 (65)
31 3b5n_C Protein transport prote 87.3 4.5 0.00016 29.1 8.6 56 228-283 8-66 (70)
32 1l4a_D S-SNAP25 fusion protein 86.0 2.9 0.0001 31.2 7.3 46 99-144 39-84 (87)
33 1n7s_D SNAP-25A; neuronal snar 84.8 8 0.00027 27.0 9.4 46 99-144 19-64 (66)
34 2nps_C Vesicle transport throu 84.3 4.4 0.00015 29.8 7.5 59 227-285 17-75 (81)
35 1sfc_D Protein (SNAP-25B), pro 84.0 10 0.00036 28.0 9.6 46 100-145 39-84 (87)
36 1l4a_C S-SNAP25 fusion protein 80.2 2.1 7.3E-05 31.9 4.4 56 227-282 22-80 (83)
37 3p8c_F ABL interactor 2; actin 77.0 22 0.00077 29.5 10.1 54 85-138 48-102 (159)
38 1gl2_D Syntaxin 8, vesicle tra 75.2 12 0.0004 26.0 6.9 44 101-144 20-63 (65)
39 2nps_D Syntaxin-6; vesicle fus 69.9 19 0.00063 26.3 7.2 58 85-145 17-74 (82)
40 3efg_A Protein SLYX homolog; x 68.0 14 0.00048 27.0 6.1 54 224-277 9-62 (78)
41 2xhe_B Syntaxin1; exocytosis, 65.6 1 3.5E-05 40.4 -0.6 60 224-283 212-271 (279)
42 1dn1_B Syntaxin 1A, syntaxin b 61.4 1.6 5.4E-05 39.1 -0.2 57 226-282 197-253 (267)
43 1sfc_A VAMP 2, protein (synapt 51.1 60 0.002 24.4 7.3 47 99-145 39-85 (96)
44 3c98_B Syntaxin-1A; protein co 49.6 3.3 0.00011 35.7 -0.2 51 225-275 208-258 (279)
45 2nps_A VAMP-4, vesicle-associa 49.6 54 0.0018 23.3 6.5 47 99-145 17-63 (74)
46 3a7p_A Autophagy protein 16; c 48.9 98 0.0034 25.4 8.6 57 227-283 66-122 (152)
47 3p8c_F ABL interactor 2; actin 47.2 81 0.0028 26.1 8.0 51 231-281 56-106 (159)
48 2xhe_B Syntaxin1; exocytosis, 43.0 3.9 0.00013 36.5 -0.7 52 92-143 219-270 (279)
49 1dn1_B Syntaxin 1A, syntaxin b 41.5 9.1 0.00031 34.1 1.4 49 95-143 205-253 (267)
50 1l4a_A Synaptobrevin; snare, s 40.9 47 0.0016 24.0 5.0 46 100-145 25-70 (80)
51 2jee_A YIIU; FTSZ, septum, coi 40.8 1.1E+02 0.0036 22.6 7.6 63 224-286 12-77 (81)
52 1n7s_A Vesicle-associated memb 38.3 93 0.0032 21.2 8.1 50 95-144 9-58 (63)
53 3b5n_A Synaptobrevin homolog 1 37.2 96 0.0033 21.0 7.9 48 97-144 9-56 (61)
54 1ic2_A Tropomyosin alpha chain 36.3 1.2E+02 0.004 21.8 8.2 54 229-282 20-73 (81)
55 1urq_A M-tomosyn isoform; tran 34.7 1.1E+02 0.0039 21.1 6.7 52 232-283 7-58 (63)
56 2v71_A Nuclear distribution pr 33.1 1.6E+02 0.0055 24.9 7.8 62 220-281 40-112 (189)
57 3hd7_A Vesicle-associated memb 30.7 1.6E+02 0.0055 21.6 8.3 49 97-145 12-60 (91)
58 3hfe_A Potassium voltage-gated 28.4 54 0.0018 19.8 2.8 19 117-135 9-27 (31)
59 1gmj_A ATPase inhibitor; coile 28.1 1.5E+02 0.0051 21.9 5.9 32 247-278 48-79 (84)
60 1gl2_A Endobrevin; membrane pr 26.7 1.6E+02 0.0053 20.2 7.9 40 97-136 16-55 (65)
61 3hd7_A Vesicle-associated memb 26.3 1.9E+02 0.0066 21.2 7.7 52 230-281 6-57 (91)
62 1yc9_A VCEC, multidrug resista 26.3 2E+02 0.0068 25.9 8.0 64 84-147 163-226 (442)
63 3nmd_A CGMP dependent protein 25.6 1.9E+02 0.0064 20.8 6.7 50 99-148 21-70 (72)
64 1sfc_A VAMP 2, protein (synapt 25.4 2.1E+02 0.0072 21.3 7.7 55 229-283 30-84 (96)
65 1rcd_A L ferritin; iron storag 24.9 2.5E+02 0.0086 22.6 7.6 58 74-131 93-153 (173)
66 3na7_A HP0958; flagellar bioge 24.6 2.7E+02 0.0092 24.0 8.2 55 228-282 31-85 (256)
67 1ek9_A Outer membrane protein 24.6 2.2E+02 0.0075 25.3 7.8 63 85-147 126-188 (428)
68 3pik_A Cation efflux system pr 24.1 1.8E+02 0.0062 26.2 7.2 63 85-147 169-231 (446)
69 1ek9_A Outer membrane protein 23.8 2.4E+02 0.0081 25.1 7.9 63 85-147 344-406 (428)
70 1kmi_Z CHEZ, chemotaxis protei 22.9 3.3E+02 0.011 23.2 8.2 67 77-143 51-134 (214)
71 3nmd_A CGMP dependent protein 22.3 2.2E+02 0.0075 20.4 6.5 46 238-283 21-66 (72)
72 3oja_B Anopheles plasmodium-re 22.1 2.4E+02 0.008 26.9 7.9 58 228-285 522-579 (597)
73 3swy_A Cyclic nucleotide-gated 22.1 91 0.0031 20.5 3.4 23 262-284 3-25 (46)
74 3vkg_A Dynein heavy chain, cyt 21.7 3.4E+02 0.012 32.6 10.2 26 120-145 2058-2083(3245)
75 3d5k_A OPRM, outer membrane pr 21.6 2.2E+02 0.0074 26.1 7.3 63 85-147 178-240 (474)
76 1urq_A M-tomosyn isoform; tran 21.2 2.1E+02 0.0071 19.7 6.9 38 99-136 13-50 (63)
77 3c98_B Syntaxin-1A; protein co 20.4 33 0.0011 29.2 1.3 54 87-140 209-262 (279)
78 3a68_A Sferh-4, ferritin-4, ch 20.1 3.8E+02 0.013 22.5 8.0 59 73-131 128-189 (212)
79 3pik_A Cation efflux system pr 20.1 2.7E+02 0.0094 24.9 7.6 62 85-146 377-438 (446)
No 1
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.89 E-value=1.8e-23 Score=159.73 Aligned_cols=76 Identities=24% Similarity=0.425 Sum_probs=71.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 70 ENQSVQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 70 ~~q~vq~l~~~~~~~~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
..++||+|++++++++++|++||+|||++|++++++|++||++|++|||||+|||++||.|+++|++|+++|++|+
T Consensus 7 ~~~~~q~l~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L~ 82 (83)
T 1l4a_C 7 PKTELEEIQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGME 82 (83)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC--
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3478999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.87 E-value=4.4e-22 Score=147.46 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhccc
Q 023155 80 YAVYKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGM 147 (286)
Q Consensus 80 ~~~~~~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks~ 147 (286)
++++++++|++||+|||++|+|++++|++||++|++|||||+|||++||.|++++++|+++|++|+++
T Consensus 2 eir~~~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 2 SIKFTKQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 56789999999999999999999999999999999999999999999999999999999999999854
No 3
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=99.84 E-value=1.2e-20 Score=143.01 Aligned_cols=76 Identities=29% Similarity=0.481 Sum_probs=73.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 70 ENQSVQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 70 ~~q~vq~l~~~~~~~~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
..+++|+|++++.++.++|++||++||++|+|++++|++||++|++|||||.||+++|+.|+.+|++|+|+|++|+
T Consensus 3 ~~~~~q~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 3 MRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999985
No 4
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.80 E-value=9.4e-20 Score=140.58 Aligned_cols=77 Identities=36% Similarity=0.647 Sum_probs=72.8
Q ss_pred hccchhhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhcC
Q 023155 210 ETGIYLRVIKTRWRKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLGK 286 (286)
Q Consensus 210 ~~g~y~~~~~~d~~~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~k 286 (286)
+.|+|+.++++++.+.+||++|++|+.+|++||+||++||.||+.||++||+|+.+||+++.+|..+++|+++|++|
T Consensus 10 ~s~~yi~~~~~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 10 ISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp --CCCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999986
No 5
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.80 E-value=4.2e-20 Score=142.58 Aligned_cols=77 Identities=29% Similarity=0.566 Sum_probs=73.0
Q ss_pred hccchhhhhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhcC
Q 023155 210 ETGIYLRVIKTRWRKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLGK 286 (286)
Q Consensus 210 ~~g~y~~~~~~d~~~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~k 286 (286)
+.|+|+.+.++++.+.+||++|++|+.+|++||+||++||.||+.||++||+|+.+||+++.+|..+|+|+++||+|
T Consensus 11 ~~~~~i~~~~~d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~k 87 (87)
T 1l4a_D 11 PSSGYVTRITNDAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLKN 87 (87)
T ss_dssp CCSSSSCCSSCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC--
T ss_pred CCchHHhccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999986
No 6
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.9e-18 Score=123.31 Aligned_cols=63 Identities=25% Similarity=0.399 Sum_probs=61.0
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 221 RWRKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 221 d~~~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
|+++.+||+||++|+.+|++||+||++||+||+.||++||+|+.++|.++.+|..+++|+.+|
T Consensus 2 d~~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~i 64 (64)
T 3b5n_D 2 SEMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI 64 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 568899999999999999999999999999999999999999999999999999999999886
No 7
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=99.72 E-value=1.2e-17 Score=117.87 Aligned_cols=54 Identities=31% Similarity=0.449 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 91 SVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 91 ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
||++|+++|+|++++|++|+++|++|||||+||+++||.|+++|++|+|+|++|
T Consensus 1 st~~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~m 54 (54)
T 1nhl_A 1 STRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTEL 54 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhcC
Confidence 699999999999999999999999999999999999999999999999999986
No 8
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.71 E-value=2.1e-17 Score=120.93 Aligned_cols=66 Identities=39% Similarity=0.673 Sum_probs=63.6
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 023155 220 TRWRKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLG 285 (286)
Q Consensus 220 ~d~~~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~ 285 (286)
+|+.+.+||++|+.|+.+|++||+||++||.||+.||++||+|+.+||+++.+|..+++|+++||+
T Consensus 1 ~d~~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll~ 66 (66)
T 1n7s_D 1 GSARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG 66 (66)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcC
Confidence 466889999999999999999999999999999999999999999999999999999999999986
No 9
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.60 E-value=1.6e-15 Score=110.49 Aligned_cols=63 Identities=29% Similarity=0.442 Sum_probs=53.9
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 023155 223 RKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLG 285 (286)
Q Consensus 223 ~~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~ 285 (286)
.+.+||++|+.|+..|++||+||.+||.||+.||++||+|++++|++..+|..+++|+.+|++
T Consensus 3 ~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 3 HMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 467899999999999999999999999999999999999999999999999999999999875
No 10
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=5.1e-15 Score=112.74 Aligned_cols=64 Identities=23% Similarity=0.355 Sum_probs=57.8
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhcC
Q 023155 223 RKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLGK 286 (286)
Q Consensus 223 ~~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~k 286 (286)
.+.+||++|+.|+..|++||+||++||.||+.||++||+|+.+||++..+|..+++|+++++++
T Consensus 13 ~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~ 76 (82)
T 2nps_D 13 MGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHM 76 (82)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999999864
No 11
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.42 E-value=4.7e-13 Score=97.61 Aligned_cols=61 Identities=26% Similarity=0.413 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 85 AEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 85 ~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
-++|++++.+|+++|.|++++|+.||.+|+.|+|||.+++..|++|+.+|++|.++|++|.
T Consensus 4 L~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~ 64 (65)
T 1gl2_C 4 MNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMS 64 (65)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhc
Confidence 4678999999999999999999999999999999999999999999999999999999873
No 12
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.14 E-value=2.5e-10 Score=86.65 Aligned_cols=72 Identities=19% Similarity=0.309 Sum_probs=64.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 72 QSVQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 72 q~vq~l~~~~~~~~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
|+.+.|... .+-+.|+++..++.++|.|++++|..||..|+.|+|+|.+++..|+.++.++.+|.++|++|.
T Consensus 3 qR~~Ll~~t--~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~ 74 (81)
T 2nps_C 3 MRAHLLDNT--ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGML 74 (81)
T ss_dssp TTTHHHHHH--HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHH
Confidence 445555433 455899999999999999999999999999999999999999999999999999999999985
No 13
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=96.92 E-value=0.0039 Score=49.19 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=56.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 224 KPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 224 ~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
..+-++.+..|...+..|+.|-.+|+..+..|.++||+|+..++.+...+..+++.+++-
T Consensus 16 i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA 75 (109)
T 3hd7_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 75 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999999999999999999999999999999999999999998765
No 14
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=96.03 E-value=0.038 Score=40.04 Aligned_cols=56 Identities=18% Similarity=0.314 Sum_probs=51.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 228 DDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 228 D~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
.+.+..|...|..|..|=.+|+.=+..|-.+||+|+..|+.+...+..++..+.+-
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 60 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRA 60 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999988764
No 15
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=95.89 E-value=0.046 Score=40.18 Aligned_cols=59 Identities=19% Similarity=0.335 Sum_probs=53.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhh
Q 023155 226 KQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLL 284 (286)
Q Consensus 226 eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll 284 (286)
+-.+.+..|...|..|+.|=.+|+.=+..|-++||+|+..|+.+...+..++..+.+-.
T Consensus 7 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 65 (77)
T 1jth_B 7 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999999999999999999999999999887654
No 16
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=95.84 E-value=0.06 Score=38.34 Aligned_cols=58 Identities=21% Similarity=0.393 Sum_probs=53.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 226 KQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 226 eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
+-...+..|...+..|+.|=.+|+.=+..|-.+||+|+..++.+...+..++..+.+-
T Consensus 6 eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 63 (65)
T 1gl2_B 6 ERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999999999999999999988764
No 17
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=95.79 E-value=0.057 Score=38.89 Aligned_cols=58 Identities=17% Similarity=0.278 Sum_probs=53.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhh
Q 023155 227 QDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLL 284 (286)
Q Consensus 227 qD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll 284 (286)
-...+..|...|..|+.|=.+|+.=+..|-.+||+|+..|+.+...+..++..+.+-.
T Consensus 8 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 65 (69)
T 3b5n_B 8 RHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAV 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999999999999999999999999999999887643
No 18
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=95.57 E-value=0.087 Score=37.76 Aligned_cols=59 Identities=19% Similarity=0.335 Sum_probs=53.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhh
Q 023155 226 KQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLL 284 (286)
Q Consensus 226 eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll 284 (286)
+-.+.+..|...|..|..|=.+|+.=+..|-.+||+|+..++.+...+..++..+.+-.
T Consensus 9 eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 9 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34577889999999999999999999999999999999999999999999999988753
No 19
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=95.32 E-value=0.094 Score=39.10 Aligned_cols=60 Identities=18% Similarity=0.327 Sum_probs=54.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhh
Q 023155 225 PKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLL 284 (286)
Q Consensus 225 ~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll 284 (286)
.+=...+..|...|..|+.|=.+|+.=+..|-.+||+|+..|+.+...+..++..+.+-.
T Consensus 17 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 76 (83)
T 1sfc_B 17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677899999999999999999999999999999999999999999999999887654
No 20
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=94.83 E-value=0.23 Score=38.86 Aligned_cols=48 Identities=13% Similarity=0.150 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 97 KIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 97 rla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
+-+.|-.++-..-..+.++|||.|+++|.+++.+..++..|.+.|..-
T Consensus 28 ~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA 75 (109)
T 3hd7_B 28 NSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 75 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777778888999999999999999999999999999888643
No 21
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=94.58 E-value=0.25 Score=35.04 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhh
Q 023155 97 KIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNN 143 (286)
Q Consensus 97 rla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~ 143 (286)
+-+.|-.++=..-..+.++|||.|++|+.++..+..++..|.+.|..
T Consensus 16 ~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 62 (65)
T 1gl2_B 16 ADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777888999999999999999999999999998863
No 22
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=94.30 E-value=0.31 Score=35.08 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 97 KIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 97 rla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
+-+.|-.++=..-+.+.++|||.|++||.+++.+..++..|...|..-
T Consensus 13 ~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 60 (71)
T 2nps_B 13 ADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRA 60 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777778889999999999999999999999999888643
No 23
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=94.15 E-value=0.41 Score=34.28 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhh
Q 023155 95 CLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNN 143 (286)
Q Consensus 95 ~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~ 143 (286)
.-+-+.|-.++=..-..+..+|||.|++|+.+++.+..++..|...|..
T Consensus 15 ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 63 (69)
T 3b5n_B 15 LEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDK 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677777777888999999999999999999999999988853
No 24
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=93.86 E-value=0.51 Score=33.65 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhh
Q 023155 97 KIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNN 143 (286)
Q Consensus 97 rla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~ 143 (286)
+-+.|-.++=..-..+..+|||.|++|+.++..+..+...|.+.|..
T Consensus 19 ~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 65 (68)
T 1n7s_B 19 NSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777788899999999999999999999999988853
No 25
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=93.39 E-value=0.63 Score=33.95 Aligned_cols=48 Identities=13% Similarity=0.150 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 97 KIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 97 rla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
+-+.|-.++=..-+.+..+|||.|++|+.+++.+..++..|...|..-
T Consensus 17 ~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 64 (77)
T 1jth_B 17 NSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 64 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777889999999999999999999999999988643
No 26
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=92.77 E-value=1.2 Score=31.57 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 96 LKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 96 Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
-.++..-...|..+=.+|..|-++|.+++..+|..+..+..+.+.|+.|
T Consensus 16 ~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~i 64 (64)
T 3b5n_D 16 QQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3445566778888899999999999999999999999999999988764
No 27
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=92.52 E-value=0.5 Score=32.36 Aligned_cols=47 Identities=13% Similarity=0.312 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHH
Q 023155 236 NILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARH 282 (286)
Q Consensus 236 ~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~k 282 (286)
..+..-..+|..+-.+|..|-++|+++...+|..+..|+.+.+-+..
T Consensus 7 ~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~ 53 (54)
T 1nhl_A 7 GLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTE 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhc
Confidence 34556778889999999999999999999999999999988776653
No 28
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=92.33 E-value=1.5 Score=32.46 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhh
Q 023155 96 LKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNN 143 (286)
Q Consensus 96 Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~ 143 (286)
-+-+.|-.++=..-..+.++|||.|++|+.++..+..++..|...|..
T Consensus 27 e~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 74 (83)
T 1sfc_B 27 ENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777888999999999999999999999999988864
No 29
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=90.65 E-value=1.7 Score=32.05 Aligned_cols=58 Identities=22% Similarity=0.374 Sum_probs=46.0
Q ss_pred hhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhh
Q 023155 227 QDDALSDLSNIL---GDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLL 284 (286)
Q Consensus 227 qD~~Ld~Ls~~l---~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll 284 (286)
+++-++.+-.++ ..-..+|..+-.+|..|-++|+++...++..+..|..+.+-+..+-
T Consensus 18 ~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 18 ADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 344444444444 4556688899999999999999999999999999999988877664
No 30
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=88.78 E-value=2.9 Score=29.46 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhh
Q 023155 228 DDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLL 284 (286)
Q Consensus 228 D~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll 284 (286)
.+-|..--.++-.-..+|..+-.+|..|-+.|.+....++.++..|....+-++.+.
T Consensus 8 ~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~ 64 (65)
T 1gl2_C 8 TQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMS 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhc
Confidence 455666667777888999999999999999999999999999999999987777654
No 31
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=87.34 E-value=4.5 Score=29.11 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 228 DDALSDLSNILGD---LKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 228 D~~Ld~Ls~~l~~---Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
++.|+....+|.- -...|..--.+|..|-++|++++..+|..+..++.+.+.++.|
T Consensus 8 ~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~L 66 (70)
T 3b5n_C 8 QSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555444443 3447777788999999999999999999999999999998876
No 32
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=86.02 E-value=2.9 Score=31.24 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 99 AENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 99 a~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
+..-...|...=.+|..|-+.|++++..+|..+..++.+-+.++.|
T Consensus 39 l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 39 IGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777788999999999999999999999999998888765
No 33
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=84.75 E-value=8 Score=26.95 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 99 AENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 99 a~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
+..-..+|...=.+|..|.+.|++++..+|.....|+.+-+.++.|
T Consensus 19 v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 19 IGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3345667777888999999999999999999999999998888765
No 34
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=84.29 E-value=4.4 Score=29.83 Aligned_cols=59 Identities=10% Similarity=0.145 Sum_probs=50.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 023155 227 QDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLG 285 (286)
Q Consensus 227 qD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~ 285 (286)
--+-|..--.++-.-..+|..+-.+|..|-+.|.+....++.++..|..+.+-++.+.+
T Consensus 17 t~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~r 75 (81)
T 2nps_C 17 SSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLR 75 (81)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 34566677777778889999999999999999999999999999999999888876653
No 35
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=84.01 E-value=10 Score=28.04 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 100 ENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 100 ~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
..-...|...=.+|..|-+.|++++..+|..+..|+.+-+.++.|-
T Consensus 39 ~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll 84 (87)
T 1sfc_D 39 GNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777789999999999999999999999999998888763
No 36
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=80.20 E-value=2.1 Score=31.93 Aligned_cols=56 Identities=25% Similarity=0.381 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHH
Q 023155 227 QDDALSDLSNILGD---LKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARH 282 (286)
Q Consensus 227 qD~~Ld~Ls~~l~~---Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~k 282 (286)
.++.|+....+|+- -+..|..--.+|..|-++|++|+..+|..+..++.+.+.+..
T Consensus 22 ~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~ 80 (83)
T 1l4a_C 22 TDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEG 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556665555544 445788888999999999999999999988888877665543
No 37
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=76.96 E-value=22 Score=29.53 Aligned_cols=54 Identities=22% Similarity=0.266 Sum_probs=44.2
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHH
Q 023155 85 AEETTN-SVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGE 138 (286)
Q Consensus 85 ~qet~~-ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~ae 138 (286)
-++|-+ .|+.-..+|+....+|.+.+.+|+.|.++|.+.|..+..|.+....=.
T Consensus 48 leeTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ih~ 102 (159)
T 3p8c_F 48 LEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHK 102 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 345555789999999999999999999999999999999998776543
No 38
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=75.18 E-value=12 Score=26.02 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 101 NIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 101 Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
.-..+|..-=.+|..|.+.|++++..+|.....|+.+-+.++.|
T Consensus 20 ~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 20 RQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777778999999999999999999999999998887655
No 39
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=69.95 E-value=19 Score=26.26 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 85 AEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 85 ~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
.++.++.....+. .-..+|..-=.+|..|.+.|++++..+|.....|+.+-+.++.|-
T Consensus 17 QD~~Ld~L~~~v~---~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~ 74 (82)
T 2nps_D 17 QDEQLELVSGSIG---VLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVS 74 (82)
T ss_dssp -CCTHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444443 445677777789999999999999999999999999998887663
No 40
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=67.98 E-value=14 Score=27.02 Aligned_cols=54 Identities=9% Similarity=0.052 Sum_probs=44.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHH
Q 023155 224 KPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGAN 277 (286)
Q Consensus 224 ~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n 277 (286)
..++++.|.+|..-|.-+-..--.++..|-+|...||.|...+..+..|+....
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788899999999999999999999999999999999999988888876544
No 41
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=65.55 E-value=1 Score=40.36 Aligned_cols=60 Identities=20% Similarity=0.302 Sum_probs=46.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 224 KPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 224 ~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
..+=.+.+..|...|..|+.|=.+|+.=|..|-.+||+|+..|+.+...|..++..+.+-
T Consensus 212 i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA 271 (279)
T 2xhe_B 212 IRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQA 271 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344478899999999999999999999999999999999999999999999998887654
No 42
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=61.40 E-value=1.6 Score=39.10 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=46.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHH
Q 023155 226 KQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARH 282 (286)
Q Consensus 226 eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~k 282 (286)
+=...+..|...|..|+.|=.+|+.=|..|-.+||+|+..|+.+...|..++..+.+
T Consensus 197 ~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~k 253 (267)
T 1dn1_B 197 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 253 (267)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778899999999999999999999999999999999999988877766665543
No 43
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=51.05 E-value=60 Score=24.38 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 99 AENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 99 a~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
+.|+..+...++..+.+-||+|+......+.....-..=.+..+.|+
T Consensus 39 ldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~ 85 (96)
T 1sfc_A 39 VDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLK 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788889999999999999999999888888777666666666665
No 44
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=49.65 E-value=3.3 Score=35.74 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=44.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHH
Q 023155 225 PKQDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKG 275 (286)
Q Consensus 225 ~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~ 275 (286)
.+-...|..|...+..|..+-.+|..-++.|...++.|...|+.+...+..
T Consensus 208 ~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~ 258 (279)
T 3c98_B 208 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVER 258 (279)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999999999999999999999988877654433
No 45
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=49.60 E-value=54 Score=23.27 Aligned_cols=47 Identities=6% Similarity=0.186 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 99 AENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 99 a~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
+.|+..+...++..+-+-||+|+......+.....-..=.+..+.|+
T Consensus 17 l~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~ 63 (74)
T 2nps_A 17 VDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLR 63 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888999999999999999988888887776666566666665
No 46
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=48.87 E-value=98 Score=25.43 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=50.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 227 QDDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 227 qD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
+...+..|-.-+..|..--.++..||...++.++.|.+....+...+..+..++++|
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kL 122 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDL 122 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888899999999999999999999999999999998888876
No 47
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=47.22 E-value=81 Score=26.12 Aligned_cols=51 Identities=14% Similarity=0.234 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHH
Q 023155 231 LSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRAR 281 (286)
Q Consensus 231 Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~ 281 (286)
-..|.+++-.+..+|..|-.=||.|...|..++..|..+..++..-..++.
T Consensus 56 ~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ih~EKva 106 (159)
T 3p8c_F 56 TQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKVA 106 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888889999999999999999999999999999999998887666654
No 48
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=43.00 E-value=3.9 Score=36.49 Aligned_cols=52 Identities=19% Similarity=0.220 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhh
Q 023155 92 VNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNN 143 (286)
Q Consensus 92 T~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~ 143 (286)
.++.-+-+.|-.++=..-+.+.++|||.|++|+.++..+..++..|...|..
T Consensus 219 I~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~k 270 (279)
T 2xhe_B 219 IQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQ 270 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556666666777777899999999999999999999999887754
No 49
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=41.49 E-value=9.1 Score=34.07 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhh
Q 023155 95 CLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNN 143 (286)
Q Consensus 95 ~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~ 143 (286)
.-+-+.|-.++=..-+.+.++|||.|++||.++..+..++..|..+|..
T Consensus 205 ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~k 253 (267)
T 1dn1_B 205 LENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 253 (267)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666667777788899999999999999998888887777653
No 50
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=40.85 E-value=47 Score=24.01 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 100 ENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 100 ~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
.|+..+...++..+.+-||+|+......+.....-..=.+..+.|+
T Consensus 25 ~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~ 70 (80)
T 1l4a_A 25 EEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLK 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999999999999988888776665444444444444
No 51
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=40.79 E-value=1.1e+02 Score=22.58 Aligned_cols=63 Identities=19% Similarity=0.378 Sum_probs=37.5
Q ss_pred cchhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhcC
Q 023155 224 KPKQDDALSDLSN---ILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLGK 286 (286)
Q Consensus 224 ~~eqD~~Ld~Ls~---~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~k 286 (286)
+.++...++.|.- -|..||.--..+..|...=...-+.+......+......-..|++.||+|
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555554443 44445554444444444333333347777778888888888889888875
No 52
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=38.32 E-value=93 Score=21.17 Aligned_cols=50 Identities=8% Similarity=0.107 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 95 CLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 95 ~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
.-.-+.|+..+...++..+-+-||+|+......+.....-..=.+..+.|
T Consensus 9 v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l 58 (63)
T 1n7s_A 9 TQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456788899999999999999999998888877766554444433333
No 53
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=37.16 E-value=96 Score=21.02 Aligned_cols=48 Identities=6% Similarity=0.116 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 97 KIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 97 rla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
.-+.|+..+...++..+-+-||+|+......+.....-..=.+..+.|
T Consensus 9 ~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l 56 (61)
T 3b5n_A 9 AEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRV 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788899999999999999999988888777666544433333333
No 54
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=36.32 E-value=1.2e+02 Score=21.78 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHH
Q 023155 229 DALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARH 282 (286)
Q Consensus 229 ~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~k 282 (286)
+.++.+..-+.....-+.....||..-++-|-.|.+.+|++..++..++.++..
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666788889999999999999999999999999999988764
No 55
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=34.66 E-value=1.1e+02 Score=21.11 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 232 SDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 232 d~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
..|..-++..+++...--+-|-+=-+.|+.|.++++.+...=..-.+...+|
T Consensus 7 ~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l 58 (63)
T 1urq_A 7 EGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEM 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555566678888888888766554444444444
No 56
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=33.08 E-value=1.6e+02 Score=24.95 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=42.8
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------HhhhhhhHHhhhHHHHHHHHHHH
Q 023155 220 TRWRKPKQDDALSDLSNILGDLKGMAVDMGSELDRQNKS-----------LDHLDADVDELNSRVKGANQRAR 281 (286)
Q Consensus 220 ~d~~~~eqD~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~-----------LD~i~~kvd~~~~ri~~~n~r~~ 281 (286)
+.+.+.+++..|..+..-+..|+.-...+..|++.-..- +..|...+..+.........+++
T Consensus 40 SrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 40 SRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444688899999999999999999999999998875333 44444444444444444444443
No 57
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=30.69 E-value=1.6e+02 Score=21.63 Aligned_cols=49 Identities=8% Similarity=0.116 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 97 KIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 97 rla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
.-+.|...+...++..+-+-||+|+......+.....-..=.+..+.|+
T Consensus 12 ~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~ 60 (91)
T 3hd7_A 12 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLK 60 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456888999999999999999999999988888776665555544444
No 58
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=28.44 E-value=54 Score=19.77 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=14.8
Q ss_pred hHHHHHHHhhHHhHhhHHH
Q 023155 117 GEQIHRTHNMVTDTEKDLS 135 (286)
Q Consensus 117 gEQL~rte~~LD~I~~dL~ 135 (286)
|-+|+|+|..+-.+++.|.
T Consensus 9 GaRLnRvE~k~t~MD~kL~ 27 (31)
T 3hfe_A 9 GARLNRVEDKVTQLDQRLA 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5678888888888877664
No 59
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=28.15 E-value=1.5e+02 Score=21.93 Aligned_cols=32 Identities=16% Similarity=0.385 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHH
Q 023155 247 DMGSELDRQNKSLDHLDADVDELNSRVKGANQ 278 (286)
Q Consensus 247 ~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~ 278 (286)
.|-.||+.+-+.|+++...+++...+|....+
T Consensus 48 kl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 48 HKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34788999999999999999888887776543
No 60
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=26.70 E-value=1.6e+02 Score=20.21 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHH
Q 023155 97 KIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSK 136 (286)
Q Consensus 97 rla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~ 136 (286)
.-+.|+..+...++..+-+-||+|+......+.....-..
T Consensus 16 ~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~ 55 (65)
T 1gl2_A 16 SEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEH 55 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3356888899999999999999999888877776655443
No 61
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=26.35 E-value=1.9e+02 Score=21.16 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHH
Q 023155 230 ALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRAR 281 (286)
Q Consensus 230 ~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~ 281 (286)
.|..+-.-|...+.+-..-=+.+=+--+.||.|.++++.+...=..-.+.++
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~ 57 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAA 57 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443344445556677777777777665443333333
No 62
>1yc9_A VCEC, multidrug resistance protein; outer membrane protein, multidrug resistanc membrane protein; HET: BOG; 1.80A {Vibrio cholerae}
Probab=26.26 E-value=2e+02 Score=25.87 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhccc
Q 023155 84 KAEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGM 147 (286)
Q Consensus 84 ~~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks~ 147 (286)
..++.+...+..+.+++.--+.|..|...+..-.-++.+.+..+..+..++..+...|..|-|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~d~~~a~~~~~~a~~~l~~a~~~~~~a~~~L~~l~G~ 226 (442)
T 1yc9_A 163 TVHAALQVRNKTVELLEKRYANGLETLGSVSQAKAVAASVEAELLGIQESIQLQKNALAALVGQ 226 (442)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455566667777777777777777777888888888999999999999999998888877543
No 63
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=25.57 E-value=1.9e+02 Score=20.77 Aligned_cols=50 Identities=8% Similarity=0.173 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhcccc
Q 023155 99 AENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGMF 148 (286)
Q Consensus 99 a~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks~F 148 (286)
+.+=++....-..+|-.+-+.|..-+..|+.-+..++.=+..|..+.|+|
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 33444444444555888888899999999999998888888888888877
No 64
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=25.42 E-value=2.1e+02 Score=21.27 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 229 DALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 229 ~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
+.|..|-.-|...+.+-..-=..|-.--+.||.|.++++.+...=..-.+.+++|
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl 84 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKL 84 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554444444555566778888888888776555444444443
No 65
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A
Probab=24.88 E-value=2.5e+02 Score=22.60 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHhhHHhHh
Q 023155 74 VQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLDM---LHQQGEQIHRTHNMVTDTE 131 (286)
Q Consensus 74 vq~l~~~~~~~~qet~~ST~r~Lrla~Esee~G~~Tl~~---L~~QgEQL~rte~~LD~I~ 131 (286)
+.++=+.+...+...+++.+....+|.+..+..+.-+.+ |.+|-|-+...+..|+.+.
T Consensus 93 ~~e~le~aL~~E~~v~~~l~~l~~~a~~~~D~~t~~fLe~~~l~eq~e~~~~l~~~l~~l~ 153 (173)
T 1rcd_A 93 GLEALQTALKLQKSVNQALLDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHITSLK 153 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445565777788999999999999988888877777 8899988877777776664
No 66
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.62 E-value=2.7e+02 Score=24.00 Aligned_cols=55 Identities=7% Similarity=0.097 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHH
Q 023155 228 DDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARH 282 (286)
Q Consensus 228 D~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~k 282 (286)
-..|..|..-+..|+.-...+..+|+.-...+..+...++.+..+|.....++..
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556666666777777777777777777777777777777777777777777653
No 67
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Probab=24.57 E-value=2.2e+02 Score=25.29 Aligned_cols=63 Identities=10% Similarity=0.098 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhccc
Q 023155 85 AEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGM 147 (286)
Q Consensus 85 ~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks~ 147 (286)
.++.+...+..+.+++.--+.|..+...+..-.-++...+..+..+..++..+...|..|-|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~G~~~~~d~~~a~~~~~~~~~~l~~a~~~~~~a~~~L~~llg~ 188 (428)
T 1ek9_A 126 TQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANELTARNNLDNAVEQLRQITGN 188 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444455555566666666666666666777777778888888888888888888888776543
No 68
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=24.14 E-value=1.8e+02 Score=26.15 Aligned_cols=63 Identities=21% Similarity=0.221 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhccc
Q 023155 85 AEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGM 147 (286)
Q Consensus 85 ~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks~ 147 (286)
.++.+...+..+.+++.--+.|..|...|..-.-++...+..+..+..++..+...|..|-|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~G~~~~~d~~~a~~~~~~a~~~~~~a~~~~~~a~~~L~~l~G~ 231 (446)
T 3pik_A 169 AEETLRNYQQSYAFVEKQLLTGSSNVLALEQARGVIESTRSDIAKRQGELAQANNALQLLLGS 231 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCC
Confidence 344444555555556666666666677777777788888888888888888888888877654
No 69
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha helical barrel, beta barrel; 2.10A {Escherichia coli} SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Probab=23.82 E-value=2.4e+02 Score=25.07 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhccc
Q 023155 85 AEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGM 147 (286)
Q Consensus 85 ~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks~ 147 (286)
.++.+...+..+.++...-+.|..|...|..-..++...+..+.....++..+.-.|..+-|.
T Consensus 344 ~~~~~~~a~~~~~~~~~~y~~G~~~~~dll~a~~~~~~a~~~~~~a~~~~~~a~~~L~~~~G~ 406 (428)
T 1ek9_A 344 YKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSALGT 406 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445556777777777777788888888888888889999999988888888888777666543
No 70
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=22.91 E-value=3.3e+02 Score=23.17 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------------HHhhHHHHHHHhhHHhHhhHHHHHHH
Q 023155 77 LENYAVYKAEETTNSVNNCLKIAENIREDAT---KTLDML--------------HQQGEQIHRTHNMVTDTEKDLSKGEK 139 (286)
Q Consensus 77 l~~~~~~~~qet~~ST~r~Lrla~Esee~G~---~Tl~~L--------------~~QgEQL~rte~~LD~I~~dL~~aek 139 (286)
......|+.+.|-.++.+.|-.++.+..... ..+..| .+..+-+++|+.-|..+.........
T Consensus 51 A~~rL~~Vv~~TE~AA~~iLd~vE~~~~~~~~l~~~~~~l~~~w~~l~~~~~~~~~~~~l~~~~~~~l~~v~~~~~~~~~ 130 (214)
T 1kmi_Z 51 ARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRQFLADVPAHTSFTNA 130 (214)
T ss_dssp HHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555566666666555544332 222222 44555666666666666655555554
Q ss_pred HHhh
Q 023155 140 QLNN 143 (286)
Q Consensus 140 ~L~~ 143 (286)
+|..
T Consensus 131 ~l~e 134 (214)
T 1kmi_Z 131 QLLK 134 (214)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 71
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=22.31 E-value=2.2e+02 Score=20.40 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHh
Q 023155 238 LGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHL 283 (286)
Q Consensus 238 l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kl 283 (286)
|..|+.+-..=-.||..+...|..++..++.-+..|......+.++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555566777777777777777777777777777666654
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.14 E-value=2.4e+02 Score=26.93 Aligned_cols=58 Identities=17% Similarity=0.076 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 023155 228 DDALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLDADVDELNSRVKGANQRARHLLG 285 (286)
Q Consensus 228 D~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~ 285 (286)
...+..+...+..++.....+..|+++-.+.++.....+..+...+...+++++.++.
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555666666666666666666666666666666666553
No 73
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=22.07 E-value=91 Score=20.48 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=13.3
Q ss_pred hhhhHHhhhHHHHHHHHHHHHhh
Q 023155 262 LDADVDELNSRVKGANQRARHLL 284 (286)
Q Consensus 262 i~~kvd~~~~ri~~~n~r~~kll 284 (286)
|+++|+++...|....-|+.+||
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLl 25 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLL 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555554
No 74
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.74 E-value=3.4e+02 Score=32.62 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=20.2
Q ss_pred HHHHHhhHHhHhhHHHHHHHHHhhhc
Q 023155 120 IHRTHNMVTDTEKDLSKGEKQLNNLG 145 (286)
Q Consensus 120 L~rte~~LD~I~~dL~~aek~L~~Lk 145 (286)
-.+++..++.....|.+|++++.+|.
T Consensus 2058 k~~L~~e~~~~~~kl~rA~~Li~gL~ 2083 (3245)
T 3vkg_A 2058 TEQIKTESSKVKNKVDRSIALLDNLN 2083 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34566777788888889999988875
No 75
>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel, antibiotic RES lipoprotein, palmitate, transmemb transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
Probab=21.63 E-value=2.2e+02 Score=26.08 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhccc
Q 023155 85 AEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGGM 147 (286)
Q Consensus 85 ~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks~ 147 (286)
.++.+...+..+.+++.--+.|..|...|..-.-++...+..+..+..++..+...|..|-|+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~G~~~~~dvl~a~~~~~~a~~~l~~a~~~~~~a~~~L~~llG~ 240 (474)
T 3d5k_A 178 TKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLGS 240 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444555566666666666666777777777777788888888888888888888888776543
No 76
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=21.16 E-value=2.1e+02 Score=19.71 Aligned_cols=38 Identities=8% Similarity=0.156 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHH
Q 023155 99 AENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSK 136 (286)
Q Consensus 99 a~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~ 136 (286)
+.++..+.......|.+-||+|+.++...+.+......
T Consensus 13 v~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~ 50 (63)
T 1urq_A 13 ASGVVGELARARLALDERGQKLSDLEERTAAMMSSADS 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888899999999999999888887765443
No 77
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=20.35 E-value=33 Score=29.16 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHH
Q 023155 87 ETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQ 140 (286)
Q Consensus 87 et~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~ 140 (286)
++..........+.+..+.-..-.....+|++.+++|+.++..+......+...
T Consensus 209 ~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~e 262 (279)
T 3c98_B 209 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSD 262 (279)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556666666667777788999999999999998887655444333
No 78
>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A
Probab=20.12 E-value=3.8e+02 Score=22.52 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHhhHHhHh
Q 023155 73 SVQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLDM---LHQQGEQIHRTHNMVTDTE 131 (286)
Q Consensus 73 ~vq~l~~~~~~~~qet~~ST~r~Lrla~Esee~G~~Tl~~---L~~QgEQL~rte~~LD~I~ 131 (286)
++.++=+.+...+...+++......+|.+..+..+.-..+ |.+|-|.+...+..|+.+.
T Consensus 128 ~~~e~le~aL~~Ek~v~~~l~~l~~~A~~~~D~~t~~fLe~~fL~EQve~~~~l~~~l~~l~ 189 (212)
T 3a68_A 128 DALHAMELALSLEKLTNEKLLNLHSVATKNGDVQLADFVETEYLGEQVEAIKRISEYVAQLR 189 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555667778888899999998888887777776 8888888877777666654
No 79
>3pik_A Cation efflux system protein CUSC; beta-barrel, lipoprotein, outer membrane; HET: UNL; 2.30A {Escherichia coli}
Probab=20.11 E-value=2.7e+02 Score=24.90 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhcc
Q 023155 85 AEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGG 146 (286)
Q Consensus 85 ~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks 146 (286)
.++.+...+..+.++...-+.|..|+..|-.-...|...+..+-....++..+.-.|..+-|
T Consensus 377 ~~~~~~~a~~~~~~~~~~y~~G~~s~~dll~a~~~l~~a~~~~~~a~~~~~~a~~~L~~~~G 438 (446)
T 3pik_A 377 QQRYLASLQITLQRARALYQHGAVSYLEVLDAERSLFATRQTLLDLNYARQVNEISLYTALG 438 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444456666666666666777777777777777888888887777777777766665543
Done!