Query 023155
Match_columns 286
No_of_seqs 229 out of 783
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 17:16:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023155.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023155hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1io1a_ e.32.1.1 (A:) Phase 1 61.6 4.9 0.00036 33.2 5.3 44 224-267 19-75 (395)
2 d1rcda_ a.25.1.1 (A:) (Apo)fer 27.1 1E+02 0.0074 22.9 7.6 58 74-131 91-151 (171)
3 d1r03a_ a.25.1.1 (A:) (Apo)fer 22.0 1.4E+02 0.01 22.0 7.5 57 74-130 91-150 (171)
4 d1wp1a_ f.5.1.1 (A:) Outer mem 19.4 1.4E+02 0.01 24.9 7.8 62 85-146 178-239 (456)
5 d1ek9a_ f.5.1.1 (A:) Integral 15.2 1.8E+02 0.013 23.5 7.1 62 85-146 126-187 (428)
6 d1ykhb1 a.252.1.1 (B:2-130) RN 13.6 79 0.0058 23.1 3.8 33 253-285 87-119 (129)
7 d1wa8b1 a.25.3.1 (B:602-695) E 13.4 1.7E+02 0.013 19.1 8.0 35 229-263 5-39 (94)
8 d1wp1a_ f.5.1.1 (A:) Outer mem 12.7 2.1E+02 0.015 23.6 7.1 60 87-146 388-448 (456)
9 d1ek9a_ f.5.1.1 (A:) Integral 12.1 3.3E+02 0.024 21.6 8.1 54 91-144 350-403 (428)
10 d1r8ia_ a.8.7.1 (A:) Typo IV s 11.5 65 0.0047 24.5 2.8 34 113-146 3-36 (187)
No 1
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=61.59 E-value=4.9 Score=33.19 Aligned_cols=44 Identities=18% Similarity=0.422 Sum_probs=36.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhhHhhhhhhHH
Q 023155 224 KPKQDDALSDLSNILGDLKGMAVD-------------MGSELDRQNKSLDHLDADVD 267 (286)
Q Consensus 224 ~~eqD~~Ld~Ls~~l~~Lk~~A~~-------------mg~Eld~QN~~LD~i~~kvd 267 (286)
.+--|..|.+++.+|.|+|+||+. |..||+...+.|++|-...+
T Consensus 19 lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia~~T~ 75 (395)
T d1io1a_ 19 AQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQ 75 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCe
Confidence 344589999999999999999975 66888888888888875543
No 2
>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]}
Probab=27.11 E-value=1e+02 Score=22.95 Aligned_cols=58 Identities=14% Similarity=0.142 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHhhHHHHHHHhhHHhHh
Q 023155 74 VQELENYAVYKAEETTNSVNNCLKIAENIREDATKT-LD--MLHQQGEQIHRTHNMVTDTE 131 (286)
Q Consensus 74 vq~l~~~~~~~~qet~~ST~r~Lrla~Esee~G~~T-l~--~L~~QgEQL~rte~~LD~I~ 131 (286)
+.++=+.+...++..+.+.++...+|.+..+.++.. ++ -|.+|-|.+..+...|..+.
T Consensus 91 ~~e~~~~al~~Ek~v~~~l~~l~~~a~~~~D~~~~~fle~~fl~eQ~e~~~~l~~~l~~l~ 151 (171)
T d1rcda_ 91 GLEALQTALKLQKSVNQALLDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHITSLK 151 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566778888999999999999988887777 43 68888887777766665554
No 3
>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]}
Probab=21.95 E-value=1.4e+02 Score=21.99 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHHHhhHHhH
Q 023155 74 VQELENYAVYKAEETTNSVNNCLKIAENIREDATKTLD---MLHQQGEQIHRTHNMVTDT 130 (286)
Q Consensus 74 vq~l~~~~~~~~qet~~ST~r~Lrla~Esee~G~~Tl~---~L~~QgEQL~rte~~LD~I 130 (286)
+.++=..+...+...+.+..+...+|++..+.++.... -|.+|-|-+......|..+
T Consensus 91 ~~~~~~~~l~~E~~vt~~i~~l~~~a~~~~D~~t~~fle~~fl~eQ~e~~~~l~~~l~~l 150 (171)
T d1r03a_ 91 GLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHVHNL 150 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456677888899999999999999998888853 3778877666555555443
No 4
>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]}
Probab=19.39 E-value=1.4e+02 Score=24.85 Aligned_cols=62 Identities=10% Similarity=0.142 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhcc
Q 023155 85 AEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGG 146 (286)
Q Consensus 85 ~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks 146 (286)
.++.++..++.+.+++.--+.|..+-..+..-.-++...+..+..+..++..+...|..|-|
T Consensus 178 ~~~~~~~~~~~~~~~~~r~~~G~~~~~d~~~a~~~l~~~~~~l~~~~~~~~~a~~~L~~llg 239 (456)
T d1wp1a_ 178 TKDTLGTYQKSFDLTQRSYDVGVASALDLRQAQTAVEGARATLAQYTRLVAQDQNALVLLLG 239 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44444455555555555556666666666666677778888888888888888877776654
No 5
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}
Probab=15.19 E-value=1.8e+02 Score=23.53 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhcc
Q 023155 85 AEETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGG 146 (286)
Q Consensus 85 ~qet~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks 146 (286)
.++.+....+.+.+++.--+.|..+...+..-.-++.+.+..+..+..++..+...|..|-|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~G~~~~~d~~~a~~~~~~~~~~l~~a~~~~~~~~~~L~~l~g 187 (428)
T d1ek9a_ 126 TQAQKEAIYRQLDQTTQRFNVGLVAITDVQNARAQYDTVLANELTARNNLDNAVEQLRQITG 187 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhhhhHHHHhhhhhhhHHHHHHHHHHHHhc
Confidence 33444455555555555555565566666666666777777777777777777777776643
No 6
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.59 E-value=79 Score=23.10 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=22.3
Q ss_pred HHHHhhHhhhhhhHHhhhHHHHHHHHHHHHhhc
Q 023155 253 DRQNKSLDHLDADVDELNSRVKGANQRARHLLG 285 (286)
Q Consensus 253 d~QN~~LD~i~~kvd~~~~ri~~~n~r~~kll~ 285 (286)
+.|.+.|.+|......+..++..+-++...||+
T Consensus 87 e~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~ 119 (129)
T d1ykhb1 87 EEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMR 119 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777666666666654
No 7
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=13.36 E-value=1.7e+02 Score=19.11 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Q 023155 229 DALSDLSNILGDLKGMAVDMGSELDRQNKSLDHLD 263 (286)
Q Consensus 229 ~~Ld~Ls~~l~~Lk~~A~~mg~Eld~QN~~LD~i~ 263 (286)
=++..|....+.|+..+..|..+|+.-...|+.|.
T Consensus 5 ~d~~~l~~~a~~i~~~~~~i~~~l~~L~~~~~~l~ 39 (94)
T d1wa8b1 5 WNFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLA 39 (94)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777663
No 8
>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.73 E-value=2.1e+02 Score=23.63 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHH-hhhcc
Q 023155 87 ETTNSVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQL-NNLGG 146 (286)
Q Consensus 87 et~~ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L-~~Lks 146 (286)
..+.+.+..+.++...=+.|..|+..|-.-...+...+..+-....++..+.-.| ..|+|
T Consensus 388 ~~~~~a~~~~~~~~~~y~~G~~s~~dll~a~~~l~~a~~~~~~a~~~~~~a~~~L~~alGg 448 (456)
T d1wp1a_ 388 DLVKASDEYYQLADKRYRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYKALGG 448 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333445555555555555666666666666666666666666666666665433 45553
No 9
>d1ek9a_ f.5.1.1 (A:) Integral outer membrane protein TolC, efflux pump component {Escherichia coli [TaxId: 562]}
Probab=12.12 E-value=3.3e+02 Score=21.65 Aligned_cols=54 Identities=9% Similarity=0.077 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhh
Q 023155 91 SVNNCLKIAENIREDATKTLDMLHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNL 144 (286)
Q Consensus 91 ST~r~Lrla~Esee~G~~Tl~~L~~QgEQL~rte~~LD~I~~dL~~aek~L~~L 144 (286)
..+..+.++...=+.|..|+..|-.-...+...+..+..+..+...+.-.|...
T Consensus 350 ~a~~~~~~~~~~y~~G~~s~~dll~a~~~~~~a~~~~~~a~~~~~~a~~~L~~~ 403 (428)
T d1ek9a_ 350 SAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQELANARYNYLINQLNIKSA 403 (428)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555556666666666666665555444433
No 10
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC {Escherichia coli [TaxId: 562]}
Probab=11.47 E-value=65 Score=24.46 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=29.1
Q ss_pred HHHhhHHHHHHHhhHHhHhhHHHHHHHHHhhhcc
Q 023155 113 LHQQGEQIHRTHNMVTDTEKDLSKGEKQLNNLGG 146 (286)
Q Consensus 113 L~~QgEQL~rte~~LD~I~~dL~~aek~L~~Lks 146 (286)
|..|.|||...-..++.....+...++.+.++.|
T Consensus 3 ~~~~~eql~q~~~ql~~~k~Ql~q~k~~~~s~tG 36 (187)
T d1r8ia_ 3 LIKQGEQLEQMAQQLEQLKSQLETQKNMYESMAK 36 (187)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4568899999999999999999999998887764
Done!