Query 023156
Match_columns 286
No_of_seqs 211 out of 1540
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 08:50:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0337 AroB 3-dehydroquinate 100.0 1.1E-79 2.4E-84 559.9 30.2 283 1-285 77-359 (360)
2 PF01761 DHQ_synthase: 3-dehyd 100.0 2E-69 4.3E-74 480.9 24.6 248 1-249 12-260 (260)
3 cd08198 DHQS-like2 Dehydroquin 100.0 1.1E-68 2.4E-73 497.3 30.2 279 2-282 83-368 (369)
4 PLN02834 3-dehydroquinate synt 100.0 1.3E-67 2.8E-72 500.9 32.4 286 1-286 146-431 (433)
5 cd08196 DHQS-like1 Dehydroquin 100.0 2.7E-66 5.7E-71 479.8 31.3 282 1-285 59-343 (346)
6 cd08197 DOIS 2-deoxy-scyllo-in 100.0 2.5E-66 5.3E-71 482.1 30.2 278 1-280 67-354 (355)
7 PRK14021 bifunctional shikimat 100.0 2.5E-66 5.4E-71 506.1 31.4 279 2-283 253-540 (542)
8 cd08195 DHQS Dehydroquinate sy 100.0 2.6E-65 5.6E-70 475.2 29.0 278 1-280 68-345 (345)
9 cd08169 DHQ-like Dehydroquinat 100.0 7.3E-65 1.6E-69 471.1 30.9 277 1-279 66-343 (344)
10 PRK13951 bifunctional shikimat 100.0 2.4E-64 5.2E-69 485.3 27.6 266 1-275 220-486 (488)
11 PRK00002 aroB 3-dehydroquinate 100.0 1.7E-63 3.6E-68 465.0 31.3 282 1-284 75-356 (358)
12 TIGR01357 aroB 3-dehydroquinat 100.0 1.8E-62 4E-67 456.0 31.3 278 2-280 65-343 (344)
13 cd08199 EEVS 2-epi-5-epi-valio 100.0 2.6E-62 5.7E-67 455.2 30.1 275 1-278 70-353 (354)
14 PRK06203 aroB 3-dehydroquinate 100.0 7.3E-61 1.6E-65 449.8 30.8 280 2-283 95-380 (389)
15 PRK00843 egsA NAD(P)-dependent 100.0 6E-48 1.3E-52 359.2 20.2 255 1-281 73-345 (350)
16 cd08549 G1PDH_related Glycerol 100.0 1.8E-43 3.9E-48 327.0 20.6 233 2-256 68-323 (332)
17 cd08174 G1PDH-like Glycerol-1- 100.0 4E-41 8.6E-46 311.4 21.4 248 2-280 61-330 (331)
18 cd08173 Gro1PDH Sn-glycerol-1- 100.0 9.7E-40 2.1E-44 303.0 21.3 250 2-282 65-337 (339)
19 cd07766 DHQ_Fe-ADH Dehydroquin 100.0 5.4E-38 1.2E-42 290.5 23.5 233 1-248 64-316 (332)
20 cd08175 G1PDH Glycerol-1-phosp 100.0 1.2E-35 2.6E-40 276.6 17.9 237 2-249 68-333 (348)
21 COG0371 GldA Glycerol dehydrog 100.0 5.1E-35 1.1E-39 268.5 18.9 257 2-282 71-353 (360)
22 COG1979 Uncharacterized oxidor 100.0 2E-33 4.3E-38 250.0 17.6 252 1-282 71-382 (384)
23 cd08182 HEPD Hydroxyethylphosp 100.0 8.5E-32 1.8E-36 252.4 22.9 250 1-281 63-367 (367)
24 cd08178 AAD_C C-terminal alcoh 100.0 1.5E-31 3.3E-36 253.1 23.3 250 2-281 65-398 (398)
25 cd08172 GlyDH-like1 Glycerol d 100.0 1.7E-31 3.7E-36 248.6 19.6 255 1-282 62-346 (347)
26 cd08180 PDD 1,3-propanediol de 100.0 3.9E-31 8.6E-36 244.7 21.8 241 1-281 64-332 (332)
27 cd08177 MAR Maleylacetate redu 100.0 4.6E-31 9.9E-36 244.8 21.9 244 2-281 64-337 (337)
28 cd08193 HVD 5-hydroxyvalerate 100.0 8E-31 1.7E-35 246.5 23.5 250 2-281 70-376 (376)
29 PRK09423 gldA glycerol dehydro 100.0 5.9E-31 1.3E-35 246.6 20.3 253 2-282 71-354 (366)
30 PRK09860 putative alcohol dehy 100.0 2.7E-30 5.8E-35 243.3 24.1 251 2-283 75-382 (383)
31 cd08551 Fe-ADH iron-containing 100.0 4.5E-30 9.7E-35 241.0 23.2 248 2-280 67-370 (370)
32 cd08189 Fe-ADH5 Iron-containin 100.0 7.3E-30 1.6E-34 239.8 24.4 248 2-280 70-374 (374)
33 cd08170 GlyDH Glycerol dehydro 100.0 1.3E-30 2.9E-35 242.9 18.5 254 2-282 64-347 (351)
34 cd08188 Fe-ADH4 Iron-containin 100.0 1E-29 2.2E-34 239.0 24.4 249 2-281 72-377 (377)
35 cd08550 GlyDH-like Glycerol_de 100.0 2.2E-30 4.8E-35 241.3 19.4 254 2-282 64-348 (349)
36 cd08176 LPO Lactadehyde:propan 100.0 1E-29 2.2E-34 239.1 23.7 249 2-281 72-377 (377)
37 cd08185 Fe-ADH1 Iron-containin 100.0 1E-29 2.2E-34 239.3 23.7 253 1-281 69-380 (380)
38 cd08192 Fe-ADH7 Iron-containin 100.0 9.7E-30 2.1E-34 238.7 23.3 249 2-281 68-370 (370)
39 cd08179 NADPH_BDH NADPH-depend 100.0 9.5E-30 2.1E-34 239.1 23.1 251 2-283 68-372 (375)
40 TIGR02638 lactal_redase lactal 100.0 1.3E-29 2.7E-34 238.6 23.7 249 1-280 72-379 (379)
41 PRK10624 L-1,2-propanediol oxi 100.0 2.2E-29 4.8E-34 237.2 25.2 251 2-283 74-381 (382)
42 PRK15454 ethanol dehydrogenase 100.0 1.3E-29 2.8E-34 239.4 23.6 250 2-282 93-393 (395)
43 cd08191 HHD 6-hydroxyhexanoate 100.0 1.4E-29 3.1E-34 238.8 23.8 230 2-243 66-360 (386)
44 TIGR03405 Phn_Fe-ADH phosphona 100.0 8.1E-30 1.8E-34 237.9 20.7 226 1-244 64-341 (355)
45 cd08190 HOT Hydroxyacid-oxoaci 100.0 4E-29 8.7E-34 237.5 24.4 262 2-283 67-413 (414)
46 COG1454 EutG Alcohol dehydroge 100.0 2.5E-29 5.4E-34 233.3 22.3 252 1-283 72-376 (377)
47 cd08187 BDH Butanol dehydrogen 100.0 3.7E-29 8E-34 235.7 23.7 250 2-281 73-382 (382)
48 cd08186 Fe-ADH8 Iron-containin 100.0 3.7E-29 7.9E-34 235.8 23.1 257 1-283 70-382 (383)
49 cd08194 Fe-ADH6 Iron-containin 100.0 8.4E-29 1.8E-33 232.7 24.5 249 2-281 67-375 (375)
50 cd08183 Fe-ADH2 Iron-containin 100.0 9.2E-29 2E-33 232.4 23.1 248 2-281 62-374 (374)
51 PRK10586 putative oxidoreducta 100.0 4.1E-29 8.9E-34 233.3 18.7 253 2-282 74-356 (362)
52 PRK15138 aldehyde reductase; P 100.0 6.5E-28 1.4E-32 227.3 24.1 252 2-282 72-385 (387)
53 cd08181 PPD-like 1,3-propanedi 100.0 5.4E-28 1.2E-32 225.8 21.8 247 2-281 70-357 (357)
54 cd08171 GlyDH-like2 Glycerol d 100.0 5.7E-28 1.2E-32 224.7 21.3 250 2-282 65-344 (345)
55 PRK13805 bifunctional acetalde 100.0 2.9E-27 6.3E-32 242.9 24.3 252 2-283 526-861 (862)
56 PF00465 Fe-ADH: Iron-containi 100.0 4.6E-27 9.9E-32 220.3 18.4 219 2-238 65-341 (366)
57 PF13685 Fe-ADH_2: Iron-contai 99.9 7E-28 1.5E-32 213.3 11.1 175 2-192 62-250 (250)
58 cd08184 Fe-ADH3 Iron-containin 99.9 2.4E-26 5.2E-31 213.5 20.8 216 2-244 65-317 (347)
59 KOG3857 Alcohol dehydrogenase, 99.8 5E-18 1.1E-22 152.5 18.0 262 2-283 114-461 (465)
60 KOG0692 Pentafunctional AROM p 97.4 0.00039 8.5E-09 66.2 6.4 95 186-281 1-107 (595)
61 PRK03202 6-phosphofructokinase 90.5 0.46 1E-05 44.0 5.1 49 2-56 80-128 (320)
62 cd00363 PFK Phosphofructokinas 90.4 0.45 9.7E-06 44.4 5.0 64 3-69 80-149 (338)
63 cd00763 Bacterial_PFK Phosphof 88.8 0.76 1.7E-05 42.5 5.2 48 3-56 80-127 (317)
64 TIGR02482 PFKA_ATP 6-phosphofr 88.7 0.83 1.8E-05 41.9 5.3 49 3-56 79-127 (301)
65 PF00365 PFK: Phosphofructokin 88.5 0.44 9.6E-06 43.3 3.4 48 4-56 81-128 (282)
66 TIGR02483 PFK_mixed phosphofru 88.2 0.92 2E-05 42.1 5.3 61 3-69 82-145 (324)
67 PRK14071 6-phosphofructokinase 87.2 1.2 2.6E-05 42.0 5.4 62 3-69 95-159 (360)
68 TIGR01162 purE phosphoribosyla 85.2 3.1 6.8E-05 34.4 6.3 46 2-53 40-85 (156)
69 PRK06555 pyrophosphate--fructo 85.0 1.6 3.5E-05 41.6 5.2 65 3-70 100-170 (403)
70 PRK14072 6-phosphofructokinase 84.5 1.9 4.2E-05 41.4 5.5 51 3-56 91-144 (416)
71 PRK07085 diphosphate--fructose 84.1 1.9 4E-05 43.0 5.3 105 2-109 151-293 (555)
72 PLN03028 pyrophosphate--fructo 83.6 1.8 4E-05 43.5 5.1 106 2-110 160-303 (610)
73 TIGR02477 PFKA_PPi diphosphate 82.8 2.3 5E-05 42.2 5.4 105 2-109 148-290 (539)
74 PLN02884 6-phosphofructokinase 81.8 2.6 5.7E-05 40.3 5.2 50 4-56 132-184 (411)
75 PTZ00286 6-phospho-1-fructokin 79.3 4 8.7E-05 39.7 5.6 64 3-69 164-233 (459)
76 cd00765 Pyrophosphate_PFK Phos 79.0 5.4 0.00012 39.7 6.5 105 3-110 154-296 (550)
77 cd00764 Eukaryotic_PFK Phospho 77.1 4.6 9.9E-05 41.8 5.5 66 2-70 465-537 (762)
78 PLN02251 pyrophosphate-depende 77.0 6.6 0.00014 39.2 6.4 105 2-109 177-319 (568)
79 PRK06830 diphosphate--fructose 76.9 4.8 0.0001 39.0 5.3 64 3-69 160-229 (443)
80 PTZ00468 phosphofructokinase f 76.1 4.7 0.0001 43.8 5.4 62 4-68 789-863 (1328)
81 PTZ00287 6-phosphofructokinase 75.2 5.3 0.00011 43.7 5.5 65 2-69 258-330 (1419)
82 PRK11914 diacylglycerol kinase 72.7 8.8 0.00019 34.9 5.8 44 4-53 53-97 (306)
83 PF01513 NAD_kinase: ATP-NAD k 72.2 4.1 8.9E-05 36.9 3.5 36 12-53 73-109 (285)
84 PLN02564 6-phosphofructokinase 70.9 8.5 0.00018 37.7 5.4 64 3-69 164-233 (484)
85 PRK00561 ppnK inorganic polyph 70.4 12 0.00027 33.5 6.0 47 3-52 16-65 (259)
86 TIGR02478 6PF1K_euk 6-phosphof 70.0 8.1 0.00018 39.9 5.4 51 3-56 466-520 (745)
87 PF00731 AIRC: AIR carboxylase 69.5 6 0.00013 32.5 3.5 46 5-53 42-87 (150)
88 COG2359 SpoVS Stage V sporulat 68.4 21 0.00046 25.7 5.6 46 5-53 17-66 (87)
89 PTZ00287 6-phosphofructokinase 67.4 10 0.00023 41.5 5.6 106 2-110 915-1058(1419)
90 PRK04885 ppnK inorganic polyph 67.0 15 0.00033 33.0 5.9 49 3-52 16-69 (265)
91 PTZ00468 phosphofructokinase f 65.8 10 0.00023 41.2 5.2 104 3-109 184-325 (1328)
92 COG0041 PurE Phosphoribosylcar 65.1 11 0.00023 31.1 4.1 46 2-53 44-89 (162)
93 COG0777 AccD Acetyl-CoA carbox 65.0 26 0.00057 31.7 6.8 72 3-79 145-231 (294)
94 COG0205 PfkA 6-phosphofructoki 63.9 13 0.00029 34.8 5.1 49 3-56 82-130 (347)
95 PRK13337 putative lipid kinase 61.7 19 0.00041 32.8 5.7 46 4-53 46-92 (304)
96 TIGR02478 6PF1K_euk 6-phosphof 59.5 18 0.0004 37.4 5.6 64 3-69 82-168 (745)
97 PF06506 PrpR_N: Propionate ca 59.0 17 0.00036 30.4 4.4 41 2-53 112-152 (176)
98 PRK00861 putative lipid kinase 58.6 22 0.00048 32.2 5.5 44 4-53 46-90 (300)
99 PLN02929 NADH kinase 57.7 26 0.00056 32.2 5.7 46 3-52 35-95 (301)
100 PF04232 SpoVS: Stage V sporul 57.6 23 0.00051 26.2 4.4 47 4-53 16-66 (86)
101 COG1691 NCAIR mutase (PurE)-re 56.2 22 0.00048 31.3 4.7 48 4-54 158-205 (254)
102 PRK13057 putative lipid kinase 56.1 28 0.00062 31.3 5.8 32 19-53 51-83 (287)
103 PRK04761 ppnK inorganic polyph 55.4 24 0.00053 31.4 5.0 41 9-52 16-57 (246)
104 PRK03708 ppnK inorganic polyph 55.0 29 0.00063 31.4 5.6 30 19-52 58-88 (277)
105 PRK13054 lipid kinase; Reviewe 55.0 32 0.00069 31.2 6.0 47 4-53 45-93 (300)
106 PRK13055 putative lipid kinase 53.1 35 0.00075 31.6 5.9 45 5-53 49-94 (334)
107 cd00764 Eukaryotic_PFK Phospho 53.0 25 0.00054 36.5 5.3 64 3-69 85-171 (762)
108 COG3199 Predicted inorganic po 53.0 29 0.00064 32.4 5.2 41 6-53 91-132 (355)
109 PRK14075 pnk inorganic polypho 52.9 36 0.00077 30.4 5.8 44 2-51 13-69 (256)
110 COG0703 AroK Shikimate kinase 52.6 11 0.00023 31.7 2.2 28 6-37 63-90 (172)
111 PRK14077 pnk inorganic polypho 51.8 43 0.00093 30.5 6.2 30 19-51 65-95 (287)
112 PRK13978 ribose-5-phosphate is 51.4 24 0.00052 31.1 4.2 38 18-55 20-59 (228)
113 PRK12361 hypothetical protein; 50.5 33 0.00072 34.0 5.7 44 4-53 286-330 (547)
114 PF00781 DAGK_cat: Diacylglyce 50.4 50 0.0011 25.7 5.7 31 20-53 56-91 (130)
115 PRK02645 ppnK inorganic polyph 50.4 39 0.00085 31.0 5.7 31 19-52 58-89 (305)
116 TIGR03702 lip_kinase_YegS lipi 48.2 46 0.001 30.0 5.9 47 4-53 41-89 (293)
117 PLN02384 ribose-5-phosphate is 45.6 58 0.0013 29.3 5.9 39 18-56 48-89 (264)
118 PLN02958 diacylglycerol kinase 45.5 46 0.001 32.6 5.7 45 6-53 159-208 (481)
119 PRK02155 ppnK NAD(+)/NADH kina 45.3 56 0.0012 29.8 5.9 30 19-51 64-94 (291)
120 PRK01231 ppnK inorganic polyph 45.1 53 0.0012 30.0 5.7 31 19-52 63-94 (295)
121 PF02084 Bindin: Bindin; Inte 44.7 29 0.00063 30.3 3.6 50 208-267 101-152 (238)
122 COG1597 LCB5 Sphingosine kinas 44.5 53 0.0011 30.0 5.6 44 4-53 47-92 (301)
123 PF10281 Ish1: Putative stress 44.3 64 0.0014 19.6 4.3 30 214-244 7-36 (38)
124 PRK02399 hypothetical protein; 44.0 76 0.0017 30.4 6.6 39 18-56 95-133 (406)
125 PRK13059 putative lipid kinase 43.6 57 0.0012 29.5 5.7 34 19-53 57-91 (295)
126 PLN02948 phosphoribosylaminoim 43.5 54 0.0012 33.0 5.9 45 3-53 453-497 (577)
127 smart00046 DAGKc Diacylglycero 42.2 74 0.0016 24.7 5.5 35 18-53 49-87 (124)
128 PRK11780 isoprenoid biosynthes 41.6 1.2E+02 0.0026 26.3 7.2 97 11-111 78-211 (217)
129 TIGR00321 dhys deoxyhypusine s 41.6 1.1E+02 0.0023 28.2 7.0 82 3-93 207-291 (301)
130 COG4152 ABC-type uncharacteriz 40.9 1.7E+02 0.0038 26.4 7.9 74 200-283 95-176 (300)
131 PF01202 SKI: Shikimate kinase 40.2 25 0.00055 28.5 2.6 30 20-51 63-92 (158)
132 TIGR00147 lipid kinase, YegS/R 40.1 67 0.0015 28.8 5.6 42 8-53 50-92 (293)
133 PF00478 IMPDH: IMP dehydrogen 39.1 33 0.00071 32.3 3.4 23 7-31 162-184 (352)
134 PRK00286 xseA exodeoxyribonucl 39.0 67 0.0015 30.9 5.7 45 4-48 178-228 (438)
135 KOG3075 Ribose 5-phosphate iso 38.5 83 0.0018 28.1 5.6 37 19-56 42-82 (261)
136 PF02601 Exonuc_VII_L: Exonucl 37.1 55 0.0012 29.9 4.6 32 5-36 58-94 (319)
137 PF00456 Transketolase_N: Tran 37.1 50 0.0011 30.7 4.3 70 213-283 195-274 (332)
138 PRK07571 bidirectional hydroge 36.7 2.5E+02 0.0055 23.4 8.4 83 199-283 58-167 (169)
139 TIGR02329 propionate_PrpR prop 36.5 64 0.0014 32.1 5.1 39 2-51 132-170 (526)
140 COG1770 PtrB Protease II [Amin 35.6 57 0.0012 33.2 4.6 54 2-55 509-569 (682)
141 PRK03501 ppnK inorganic polyph 35.5 92 0.002 28.0 5.6 48 3-52 18-72 (264)
142 TIGR03492 conserved hypothetic 35.4 60 0.0013 30.8 4.7 43 5-56 81-125 (396)
143 PF02776 TPP_enzyme_N: Thiamin 33.3 1.1E+02 0.0024 25.0 5.5 46 2-52 2-47 (172)
144 TIGR03568 NeuC_NnaA UDP-N-acet 32.9 97 0.0021 29.0 5.6 44 4-53 82-126 (365)
145 cd05015 SIS_PGI_1 Phosphogluco 31.5 1.3E+02 0.0028 24.5 5.5 45 2-47 5-52 (158)
146 PRK12373 NADH dehydrogenase su 31.4 4.8E+02 0.01 25.1 10.0 82 200-283 60-169 (400)
147 PRK03372 ppnK inorganic polyph 31.1 64 0.0014 29.7 3.9 31 19-52 73-104 (306)
148 KOG3198 Signal recognition par 30.6 1.4E+02 0.003 24.4 5.2 60 212-281 45-105 (152)
149 PF06792 UPF0261: Uncharacteri 30.5 1.2E+02 0.0026 29.0 5.7 36 19-54 94-129 (403)
150 PF02037 SAP: SAP domain; Int 30.1 1.3E+02 0.0027 18.0 4.0 27 213-243 6-32 (35)
151 PRK03971 putative deoxyhypusin 29.0 2E+02 0.0043 26.9 6.7 82 3-93 240-324 (334)
152 PRK02231 ppnK inorganic polyph 29.0 76 0.0017 28.7 4.0 30 19-51 43-73 (272)
153 PRK02301 putative deoxyhypusin 28.9 2E+02 0.0044 26.6 6.7 82 3-93 218-303 (316)
154 PRK01911 ppnK inorganic polyph 28.7 76 0.0016 29.0 4.0 31 19-52 65-96 (292)
155 PRK02649 ppnK inorganic polyph 28.5 1.2E+02 0.0027 27.8 5.3 31 19-52 69-100 (305)
156 PRK00702 ribose-5-phosphate is 27.3 2E+02 0.0043 25.1 6.2 39 18-56 19-58 (220)
157 TIGR00237 xseA exodeoxyribonuc 27.3 1.2E+02 0.0025 29.4 5.2 45 4-48 172-223 (432)
158 COG1570 XseA Exonuclease VII, 27.0 1.1E+02 0.0023 29.7 4.7 33 4-36 178-212 (440)
159 PF06506 PrpR_N: Propionate ca 26.9 58 0.0013 27.0 2.7 40 6-55 24-64 (176)
160 PRK10886 DnaA initiator-associ 26.2 2.2E+02 0.0049 24.2 6.2 47 5-51 96-143 (196)
161 PRK10017 colanic acid biosynth 24.9 52 0.0011 31.7 2.3 37 18-54 117-158 (426)
162 PRK15424 propionate catabolism 24.8 1.4E+02 0.0031 29.7 5.3 31 2-37 142-172 (538)
163 PRK01221 putative deoxyhypusin 24.7 2.5E+02 0.0054 26.0 6.5 82 3-93 218-302 (312)
164 COG1905 NuoE NADH:ubiquinone o 24.6 4.1E+02 0.0089 22.0 8.5 49 235-284 93-157 (160)
165 cd08178 AAD_C C-terminal alcoh 24.3 2.1E+02 0.0045 27.1 6.2 35 213-248 313-347 (398)
166 PRK03910 D-cysteine desulfhydr 24.1 2.1E+02 0.0045 26.3 6.1 28 4-31 170-197 (331)
167 PRK04539 ppnK inorganic polyph 23.9 1E+02 0.0023 28.1 3.9 30 19-51 69-99 (296)
168 cd05006 SIS_GmhA Phosphoheptos 23.8 2.3E+02 0.0051 23.1 5.8 38 14-51 97-135 (177)
169 COG2873 MET17 O-acetylhomoseri 22.6 1.5E+02 0.0031 28.4 4.6 62 212-282 114-175 (426)
170 COG2515 Acd 1-aminocyclopropan 22.1 1.9E+02 0.004 26.8 5.0 46 1-51 165-214 (323)
171 PRK13937 phosphoheptose isomer 21.8 2.8E+02 0.006 23.2 5.9 38 14-51 102-140 (188)
172 PF03129 HGTP_anticodon: Antic 21.3 2.4E+02 0.0053 20.1 4.9 44 2-51 16-59 (94)
173 COG2185 Sbm Methylmalonyl-CoA 21.0 94 0.002 25.3 2.7 14 4-17 80-93 (143)
174 PRK13609 diacylglycerol glucos 20.5 2E+02 0.0042 26.6 5.2 43 4-52 93-135 (380)
No 1
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-79 Score=559.89 Aligned_cols=283 Identities=60% Similarity=0.957 Sum_probs=270.7
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 80 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~ 80 (286)
++++.++++.+.+.+++|+|.|||+|||+++|++||+||+|+||++||+||||+++|||||+||||+||++.+||++|+|
T Consensus 77 l~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~Aaty~RGv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF 156 (360)
T COG0337 77 LETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAAATYMRGVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAF 156 (360)
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHHcCCCeEeccchHHHHhhcccccccccCCCCCcceeecc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhh
Q 023156 81 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES 160 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~ 160 (286)
|+|++||+||+++.|||+|++++|++|++||+++.|.++|+|++++.+.+.+.+. .++++|.+||+.|+++|.+|++|+
T Consensus 157 ~qP~aVi~D~~~L~TLp~re~~~G~AEvIK~g~I~D~~~f~~Le~~~~~l~~~~~-~l~~~I~rs~~~Ka~VV~~De~E~ 235 (360)
T COG0337 157 YQPKAVLIDTDFLKTLPPRELRAGMAEVIKYGLIADPEFFDWLEENLDALLALDP-ALEELIARSCQIKAEVVAQDEKES 235 (360)
T ss_pred cCCcEEEEchHHhccCCHHHHHHhHHHHHHHhhhcCHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhhHHhhcCccch
Confidence 9999999999999999999999999999999999999999999998655554444 489999999999999999999999
Q ss_pred hhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 023156 161 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 240 (286)
Q Consensus 161 g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~ 240 (286)
|+|++||||||||||+|+.++|..++||||||+||.+.+++|+++|+++.++++|+.++++++|+|+++++..+.+.+++
T Consensus 236 G~R~~LN~GHT~GHAiE~~~~y~~~~HGeAVaiGmv~aa~ls~~lG~~~~~~~~r~~~~L~~~gLP~~~~~~~~~~~l~~ 315 (360)
T COG0337 236 GLRAILNLGHTFGHAIEALTGYGKWLHGEAVAIGMVMAARLSERLGLLDKADAERILNLLKRYGLPTSLPDELDAEKLLE 315 (360)
T ss_pred hhHHHHhcchHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCccCCCcCCHHHHHH
Confidence 99999999999999999999885699999999999999999999999999999999999999999999986678999999
Q ss_pred HHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHHhh
Q 023156 241 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK 285 (286)
Q Consensus 241 ~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~~~ 285 (286)
.|..|||+++|+++||++++ ||++.+.++++++++.++++.++.
T Consensus 316 ~m~~DKK~~~g~i~~vl~~~-iG~~~~~~~v~~~~l~~~l~~~~~ 359 (360)
T COG0337 316 AMARDKKVLGGKIRFVLLKE-IGKAEIAEGVDEELLLDALEEVHA 359 (360)
T ss_pred HHhhcccccCCceEEEeehh-cCceEeecCCCHHHHHHHHHHHhc
Confidence 99999999999999999997 999999878999999999998874
No 2
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=100.00 E-value=2e-69 Score=480.90 Aligned_cols=248 Identities=52% Similarity=0.850 Sum_probs=227.1
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 80 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~ 80 (286)
++++.++++.+.+++++|+|+|||+|||+++|+++|+|++|+||+||++||||+++|+|||+|||++||+..+||++|+|
T Consensus 12 l~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y~RGi~~i~vPTTLLa~vDssiGgK~~vN~~~~KN~iG~f 91 (260)
T PF01761_consen 12 LETVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTYMRGIPFIQVPTTLLAQVDSSIGGKTGVNFPGGKNLIGTF 91 (260)
T ss_dssp HHHHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHBTT--EEEEEE-SHHHHHTTTSSSEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHccCCceEeccccHHHHHhcccCCCeeeeCCCCCCccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhc-CCHHHHHHHHHHHHHhhhhhhccChhh
Q 023156 81 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMA-RDPRAFAYAIKRSCENKAEVVSLDEKE 159 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~-~~~~~l~~~i~~~~~~~~~~v~~d~~~ 159 (286)
|+|.+|++||+++.|||++++++|++|++||+++.|+++|++++++...+++ .+.+.+.++|.+++..|.+++++|++|
T Consensus 92 ~~P~~V~iD~~~l~tL~~~e~~~G~aEiiK~a~i~d~~lf~~l~~~~~~~~~~~~~~~l~~~i~~si~~K~~iv~~D~~E 171 (260)
T PF01761_consen 92 YQPEAVLIDPSFLKTLPPREIRSGLAEIIKYALIADPELFELLEDHAKDLLEERDPDALEEIIKRSIKIKARIVEQDEFE 171 (260)
T ss_dssp ---SEEEEEGGGGGGS-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred CCCceeEEcHHHHhhccHHHHHhCHHHHHHHHHHCCHHHHHHHHhhHHHHhcccCHHHHHHHHHHHHHHHHHHhccCccc
Confidence 9999999999999999999999999999999999999999999998877766 467789999999999999999999999
Q ss_pred hhhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHH
Q 023156 160 SGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFK 239 (286)
Q Consensus 160 ~g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~ 239 (286)
.|+|++||||||||||+|.++++ .++||++||+||.++++++.++|+++++..+++.++++++|+|+.++..+++++++
T Consensus 172 ~g~R~~Ln~GHT~gHAlE~~~~~-~i~HGeAVa~Gm~~~a~ls~~~g~~~~~~~~~i~~ll~~~glp~~~~~~~~~~~l~ 250 (260)
T PF01761_consen 172 KGLRRILNFGHTFGHALESLSGY-KISHGEAVAIGMVFAARLSVRLGLLDEDDVERIEELLEKLGLPTSLPDIVDPDELI 250 (260)
T ss_dssp SSGGGGGGTTHHHHHHHHHHCTT-TS-HHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHTTTTTSCCTTS-HHHHH
T ss_pred ccchHHhcccchhHHHHHHhcCC-CCchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHH
Confidence 99999999999999999999887 79999999999999999999999999999999999999999999988767999999
Q ss_pred HHHHhchhcc
Q 023156 240 SIMAVDKKVA 249 (286)
Q Consensus 240 ~~l~~dkk~~ 249 (286)
++|.+|||+|
T Consensus 251 ~~l~~DKK~r 260 (260)
T PF01761_consen 251 EALKHDKKNR 260 (260)
T ss_dssp HHHTTCTTS-
T ss_pred HHHHhCCCCC
Confidence 9999999985
No 3
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=100.00 E-value=1.1e-68 Score=497.31 Aligned_cols=279 Identities=35% Similarity=0.501 Sum_probs=265.4
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
+++.++++.+.+++++|.|+|||+|||+++|+|||+|++|+||+||++||||+++|+|+++|+|+++|....||.+|.|+
T Consensus 83 ~~v~~i~~~l~~~~~~r~~~IIalGGG~v~D~ag~vA~~~~rGip~I~IPTTlla~vDs~~g~k~~vn~~~~knlvg~f~ 162 (369)
T cd08198 83 DLVEALHAAINRHGIDRHSYVIAIGGGAVLDAVGYAAATAHRGVRLIRIPTTVLAQNDSGVGVKNGINAFGKKNFLGTFA 162 (369)
T ss_pred HHHHHHHHHHHHcCCCcCcEEEEECChHHHHHHHHHHHHhcCCCCEEEECCCchhhhCCCeeeeecccCCCCcceecccc
Confidence 56889999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred CcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhh--ccChhh
Q 023156 82 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVV--SLDEKE 159 (286)
Q Consensus 82 ~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v--~~d~~~ 159 (286)
+|..|++||+++.|+|++++++|++|++||+++.||++|++++++...+...+++.+.+++.+++..|.+++ ++|++|
T Consensus 163 ~P~~viiDp~~l~tlP~r~~~~G~aE~iK~~~i~d~~l~~~l~~~~~~~~~~~~~~~~~ii~~s~~~K~~~v~~~~D~~e 242 (369)
T cd08198 163 PPYAVINDFAFLTTLPDRDKRAGLAEAVKVALIKDAAFFEWLEENAAALASFDPDVMEELIRRCAELHLEHIAAGGDPFE 242 (369)
T ss_pred CCCEEEEcHHHHhhCCHHHHHhhHHHHHHHHhhCCHHHHHHHHhhHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCchh
Confidence 999999999999999999999999999999999999999999998777777777778899999999999988 899999
Q ss_pred hhhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC-----CC
Q 023156 160 SGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT-----MT 234 (286)
Q Consensus 160 ~g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~-----~~ 234 (286)
.|.|++||||||||||+|..++| .++||||||+||.++++++.++|+++++..+++.++++++|+|+++++. ++
T Consensus 243 ~g~r~~Ln~GHT~gHAlE~~~~~-~~~HGeAVaiGm~~~~~ls~~~g~~~~~~~~~i~~~l~~~glp~~~~~~~~~~~~~ 321 (369)
T cd08198 243 LGSARPLDFGHWSAHKLEQLSNY-ALRHGEAVAIGIALDTLYSVLLGLLSEAEAERVLALLEALGFPLWHPALERRDSKG 321 (369)
T ss_pred ccccccccccchhHHHHHhcCCC-CCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCcchhhccccCCC
Confidence 99999999999999999998877 6999999999999999999999999999999999999999999998753 37
Q ss_pred HHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHH
Q 023156 235 VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 235 ~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~ 282 (286)
.+.++++|.+|||+++|+++|+||++ +|++.+..+++++++++++++
T Consensus 322 ~~~~~~~~~~dKK~~~g~i~~vl~~~-iG~~~~~~~v~~~~i~~~~~~ 368 (369)
T cd08198 322 ELEVLKGLEEFREHLGGELTITLLTG-IGRGIEVHEIDLELLEEAIDE 368 (369)
T ss_pred HHHHHHHHHHhhcccCCeEEEEEEcC-CCcEEEECCCCHHHHHHHHHh
Confidence 89999999999999999999999997 999999889999999998875
No 4
>PLN02834 3-dehydroquinate synthase
Probab=100.00 E-value=1.3e-67 Score=500.90 Aligned_cols=286 Identities=86% Similarity=1.353 Sum_probs=272.3
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 80 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~ 80 (286)
++++.++++.++++++||.|+|||+|||+++|+|||+|++|+||+||++||||+++++|+++|+|+++|++.+||++|.|
T Consensus 146 l~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y~rgiplI~VPTTllA~vDss~ggK~~i~~~~~KNlig~f 225 (433)
T PLN02834 146 METLMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASYQRGVNFVQIPTTVMAQVDSSVGGKTGVNHPLGKNMIGAF 225 (433)
T ss_pred HHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHhcCCCCEEEECCcCCeEEecCCCceeEEecCCcccccccc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhh
Q 023156 81 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES 160 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~ 160 (286)
++|.+||+||+++.|+|++++++|++|++||+++.|.++|+|++.+..++++.++..+.+++.++|..|.+++..|++|.
T Consensus 226 ~~P~~VivDp~~l~tlP~r~~~sG~~E~iK~~~i~d~~~fe~l~~~~~~~~~~~~~~l~~~i~~s~~~K~~vv~~d~~e~ 305 (433)
T PLN02834 226 YQPQCVLIDTDTLATLPDRELASGIAEVVKYGLIRDAEFFEWQEANMEKLLARDPGALAYAIKRSCENKAEVVSLDEKES 305 (433)
T ss_pred cCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHHhcCHHHHHHHHhhHHhHhccCHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 99999999999999999999999999999999999999999999987788888888889999999999999999999999
Q ss_pred hhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 023156 161 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 240 (286)
Q Consensus 161 g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~ 240 (286)
|+|++||||||||||||..++|+.++|||+||+||.+++++++++|++++++++++.++++++|+|+++++.++.+.+++
T Consensus 306 G~r~~Ln~GHT~gHAiE~~~~~~~~~HGeaVaiGm~~~~~ls~~~G~~~~~~~~~i~~ll~~~gLP~~~~~~~~~~~~~~ 385 (433)
T PLN02834 306 GLRATLNLGHTFGHAIETGPGYGEWLHGEAVAAGTVMAADMSYRLGWIDMSLVNRIFALLKRAKLPTNPPEKMTVEMFKS 385 (433)
T ss_pred chhhhhcCcHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCcccccCCHHHHHH
Confidence 99999999999999999976665699999999999999999999999999999999999999999999987678999999
Q ss_pred HHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHHhhC
Q 023156 241 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCKS 286 (286)
Q Consensus 241 ~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~~~~ 286 (286)
.|..|||+++++++|+||+++||++.+..+++++++.++++++|++
T Consensus 386 ~~~~dkK~~~~~i~~vl~~~~iG~~~~~~~~~~~~l~~~l~~~~~~ 431 (433)
T PLN02834 386 LMAVDKKVADGLLRLILLKGELGNCVFTGDFDREALEETLRAFCKS 431 (433)
T ss_pred HHhhcccccCCeEEEEEecCCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999449999998899999999999988764
No 5
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=100.00 E-value=2.7e-66 Score=479.81 Aligned_cols=282 Identities=32% Similarity=0.482 Sum_probs=265.4
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 80 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~ 80 (286)
++++.++++.+++++++|.|+|||+|||+++|+|||+|++|+||+||++||||+++|+|+++|+|+++|....||.+|+|
T Consensus 59 l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~~rgi~~i~iPTTlla~vds~ig~k~~vn~~~~Kn~ig~f 138 (346)
T cd08196 59 LEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASIYMRGVSWSFVPTTLLAQVDSCIGSKSSINVGPYKNLVGNF 138 (346)
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHHcCCCeEEecccHHHhhhccccccceecCCCCCcccccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhh
Q 023156 81 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES 160 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~ 160 (286)
++|..||+||+++.|+|.+++++|++|++||+++.|.++|++++.+.+.+. .+.+.+.+++.+++..|.+++++|++|.
T Consensus 139 ~~P~~viiD~~~l~tlp~~~~~~G~aEiiK~~~i~~~~~f~~l~~~~~~~~-~~~~~~~~~i~~s~~~K~~vv~~D~~e~ 217 (346)
T cd08196 139 YPPREIYIDPPFLSTLDEKEIYSGLGEALKICYARGPDVFARYLQLYPVLF-TEHEALSRIIRSSLAIKKWFIEIDEFDQ 217 (346)
T ss_pred CCCCEEEEchHHhccCCHHHHHhhHHHHHHHHHhCCHHHHHHHHhhhhhhc-CCHHHHHHHHHHHHHHHHHHhhhCcccc
Confidence 999999999999999999999999999999999999999999998655443 5567889999999999999999999999
Q ss_pred hhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCC---CCCCCHHH
Q 023156 161 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAP---PDTMTVEM 237 (286)
Q Consensus 161 g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l---~~~~~~~~ 237 (286)
|+|+++|||||||||+|+.+++ .++|||+||+||.++++++.++|+++.+..+++.++++++|+|+.. +..+++++
T Consensus 218 g~R~~Ln~GHt~gHAlE~~~~~-~~~HGeaVaiGm~~~~~ls~~~g~~~~~~~~~i~~~l~~~~lp~~~~~~~~~~~~~~ 296 (346)
T cd08196 218 GERLLLNYGHTFGHALESATNF-AIPHGIAVGLGMLMANTIAVLAGGTMGLHSQELHEVLKKILLPIQEIADLAHIDADT 296 (346)
T ss_pred CccHHHhccchhhHHHHccCCC-CCchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccccccCCCCCHHH
Confidence 9999999999999999998766 6999999999999999999999999999999999999999999876 12368999
Q ss_pred HHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHHhh
Q 023156 238 FKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFCK 285 (286)
Q Consensus 238 ~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~~~ 285 (286)
++++|.+|||+|+|+++|+||.+ +|++.+.++++.+++++++.++.+
T Consensus 297 ~~~~l~~dkk~~~~~~~~vL~~~-iG~~~~~~~~~~~~~~~~~~~~~~ 343 (346)
T cd08196 297 LLAAFAKDKKHSGTQLRLILPDA-EGGLFKYVDPKDDEFRALIQEYFE 343 (346)
T ss_pred HHHHHHHhhCccCCeEEEEEEcc-CCceEEeCCCChHHHHHHHHHHHH
Confidence 99999999999999999999997 999999889999999999987753
No 6
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=100.00 E-value=2.5e-66 Score=482.11 Aligned_cols=278 Identities=35% Similarity=0.568 Sum_probs=263.0
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 80 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~ 80 (286)
++++.++++.++++++||.|+|||||||+++|+|||+|+.|+||+|+++||||+++++||++++|+++|...+||.+|.|
T Consensus 67 ~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~~rgip~I~IPTTlla~~da~i~~k~~vn~~~~kn~~g~~ 146 (355)
T cd08197 67 LSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALLFRGIRLVHIPTTLLAQSDSVLSLKQAVNSTYGKNLIGLY 146 (355)
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhccCCCEEEecCcccccccccccCceeeeCCCCcceeecC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhh
Q 023156 81 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES 160 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~ 160 (286)
++|.+||+||+++.|+|++++++|++|++||+++.|+++|++++.+...+.+.+++.+.++|.+++..|.++|++|++|.
T Consensus 147 ~~P~~vivDp~~l~tlP~~~~~aG~~d~ik~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~s~~~k~~vv~~D~~e~ 226 (355)
T cd08197 147 YPPSFIFIDTRVLRTLPERQIRSGLCETVKNALAQEPDFLPYLESDLRNALDYDPDGLEEIIRLSIEAKLPVLSGDPYEK 226 (355)
T ss_pred CCCcEEEEcHHHHhhCCHHHHHhhHHHHHHHHHhcCHHHHHHHHHhHHHhhccCHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999999999999999999999999887777777888899999999999999999999999
Q ss_pred hhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 023156 161 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 240 (286)
Q Consensus 161 g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~ 240 (286)
|+|++||||||||||+|..++ ..++||++||+||.+++++|.++|+++.++.+++.++++++|+|+.+++.++++++++
T Consensus 227 g~r~~Ln~GHT~ghalE~~~~-~~~~HGeaVa~Gm~~~~~ls~~~g~~~~~~~~~i~~~l~~~~lp~~~~~~~~~~~~~~ 305 (355)
T cd08197 227 KLGLILEYGHTVGHAVELLSQ-GGLTHGEAVAIGMLVAAEIARRMGLLSEEDVALHYELLSKLGLPTRIPSDISLDDILH 305 (355)
T ss_pred ccchhhhCcccccHHHHhhcC-CCcChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccCCCCCCHHHHHH
Confidence 999999999999999999765 3689999999999999999999999999999999999999999998875578999999
Q ss_pred HHHhchhccCC-----eeEEEeecCCCcceEEc-----CCCCHHHHHHHH
Q 023156 241 IMAVDKKVADG-----LLRLILLKGPLGNCVFT-----GDYDRKALDDTL 280 (286)
Q Consensus 241 ~l~~dkk~~~~-----~~~~~l~~~~iG~~~~~-----~~v~~~~~~~~~ 280 (286)
+|.+|||++++ +++||||++ +|++.+. .+++.+++++++
T Consensus 306 ~~~~dkk~~~~~~~~~~~~~vl~~~-iG~~~~~~~~~~~~~~~~~~~~~~ 354 (355)
T cd08197 306 RVRYDNKRGYIPLDADQVPMVLLEG-LGKPAGTNGTPLTPVPLEVIKEAI 354 (355)
T ss_pred HHHhccCccCCCCCCCeEEEEEEcC-CCcEEEecCcccCCCCHHHHHHHh
Confidence 99999999999 999999997 9999874 469999988775
No 7
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=100.00 E-value=2.5e-66 Score=506.10 Aligned_cols=279 Identities=39% Similarity=0.613 Sum_probs=261.9
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
+++.++++.+.+++.+|.|+|||+|||+++|+|||+|++|+||+||++||||+++|+|||+|+|++||++.+||.+|.|+
T Consensus 253 ~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPTTllA~vDss~ggkt~in~~~gkn~ig~f~ 332 (542)
T PRK14021 253 EVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPTSLLAMVDASTGGKTGINTPQGKNLVGSFY 332 (542)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCChHHhhhccccCCceEEECCCCceeEeeec
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCC---------HHHHHHHHHHHHHhhhhh
Q 023156 82 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD---------PRAFAYAIKRSCENKAEV 152 (286)
Q Consensus 82 ~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~---------~~~l~~~i~~~~~~~~~~ 152 (286)
+|.+|++||+++.|+|.+++++|++|++||+++.||++|++++++...+...+ .+.+.++|.++|..|.++
T Consensus 333 ~P~~V~iD~~~l~tlP~r~~~aG~gE~iK~~~i~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~si~~K~~v 412 (542)
T PRK14021 333 TPAGVLADTKTLATLPNDIFIEGLGEVAKSGFIRDPEILRILEDHAAELRAFDGSTFLGSPLEDVVAELIERTVKVKAYH 412 (542)
T ss_pred CCCEEEEeHHHHhhCCHHHHHhhHHHHHHHHhhCCHHHHHHHHhhHHHHhhhccccccccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765543322 356788999999999999
Q ss_pred hccChhhhhhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC
Q 023156 153 VSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT 232 (286)
Q Consensus 153 v~~d~~~~g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~ 232 (286)
++.|++|.|.|++||||||||||||..++| .++|||+||+||.+++++|.++|++++++.+++.++++++|+|+++++
T Consensus 413 v~~D~~e~g~r~~Ln~GHT~gHaiE~~~~~-~~~HGeaVa~Gm~~~~~ls~~~g~~~~~~~~~i~~ll~~~~lp~~~~~- 490 (542)
T PRK14021 413 VSSDLKEAGLREFLNYGHTLGHAIEKLEHF-RWRHGNAVAVGMVYAAELAHLLGYIDQDLVDYHRSLLASLGLPTSWNG- 490 (542)
T ss_pred hcCCCccccchHHHhccchhhHHHHcccCC-CCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcCCCC-
Confidence 999999999999999999999999998877 699999999999999999999999999999999999999999998764
Q ss_pred CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHH
Q 023156 233 MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 233 ~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~ 283 (286)
.+.+.+++.|.+|||+++|+++||||++ +|++.+..+++.+++++++++.
T Consensus 491 ~~~~~~~~~~~~dkK~~~~~i~~vl~~~-iG~~~~~~~v~~~~~~~~~~~~ 540 (542)
T PRK14021 491 GSFDDVLALMHRDKKARGNELRFVVLDE-IGHPVHLDNPPAEAVEEAFRRI 540 (542)
T ss_pred CCHHHHHHHHHHhcCccCCeEEEEEECC-CCCEEEeCCCCHHHHHHHHHHH
Confidence 4778999999999999999999999997 9999998899999999998754
No 8
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=100.00 E-value=2.6e-65 Score=475.16 Aligned_cols=278 Identities=57% Similarity=0.931 Sum_probs=262.0
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 80 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~ 80 (286)
++++.++++.+++++++|.|+|||||||+++|+|||+|++|+||+|+++||||+++|+|+++++|+++|.+..||.+|.|
T Consensus 68 ~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~rgip~i~VPTT~~a~vds~~~~k~~i~~~~~kn~~g~~ 147 (345)
T cd08195 68 LETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATYMRGIDFIQIPTTLLAQVDSSVGGKTGVNHPLGKNLIGAF 147 (345)
T ss_pred HHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHHhcCCCeEEcchhHHHHhhccCCCcceecCCCCCceeccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhh
Q 023156 81 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES 160 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~ 160 (286)
++|.+||+||+++.|+|++++++|++|++||+++.||++|++++.+.....+...+.+.+++.+++..|.+++.+|++|.
T Consensus 148 ~~P~~viiD~~~l~tlP~~~~~~G~~d~ik~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~k~~~v~~d~~e~ 227 (345)
T cd08195 148 YQPKLVLIDTDFLKTLPEREFRSGLAEVIKYGLIADAELFEWLEENKEAILALDPEALEEIIARSCEIKAEVVEQDEREK 227 (345)
T ss_pred CCCCEEEEehHHhhhCCHHHHHhHHHHHHHHHhhCCHHHHHHHHhhHHHHhccCHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 99999999999999999999999999999999999999999998876666666678889999999999999999999999
Q ss_pred hhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 023156 161 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 240 (286)
Q Consensus 161 g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~ 240 (286)
|+|+++||||||+||||..+++.+++||++||+||.+++++++++|.++.+..+++.++++++|+|+.+. .++++++++
T Consensus 228 ~~r~~ln~GHt~gHalE~~~~~~~~~HGeaVaiGm~~~~~l~~~~g~~~~~~~~~i~~~l~~~g~p~~~~-~~~~~~~~~ 306 (345)
T cd08195 228 GLRAILNFGHTFGHAIEALTGYGTLLHGEAVAIGMVAAARLSERLGLLSEEDLERIEKLLKKLGLPTSLP-DLDAEDLLE 306 (345)
T ss_pred CCceeecCcccchHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHH
Confidence 9999999999999999998754468999999999999999999999999999999999999999999983 478999999
Q ss_pred HHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHH
Q 023156 241 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 280 (286)
Q Consensus 241 ~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~ 280 (286)
+|.+|||+|+++++|+||+. +|++.+..+++++++++++
T Consensus 307 ~l~~dkk~~~~~~~~vl~~~-iG~~~~~~~v~~~~l~~~~ 345 (345)
T cd08195 307 AMKHDKKNRGGKIRFVLLKG-IGKAVIVKDVPEEELREAL 345 (345)
T ss_pred HHHHhhcccCCcEEEEEEcC-CcceEEeCCCCHHHHHHhC
Confidence 99999999999999999997 9999998789999998763
No 9
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=100.00 E-value=7.3e-65 Score=471.10 Aligned_cols=277 Identities=41% Similarity=0.679 Sum_probs=262.2
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 80 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~ 80 (286)
++++.++++.+++++.+|.|+|||||||+++|+|||+|+.|+||+|+++||||+++|+||++|+|+++|.+..||.+|.|
T Consensus 66 ~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~rgip~i~VPTTlla~~ds~~g~k~~i~~~~~kn~~g~~ 145 (344)
T cd08169 66 FETVTRILERAIALGANRRTAIVAVGGGATGDVAGFVASTLFRGIAFIRVPTTLLAQSDSGVGGKTGINLKGGKNLLGTF 145 (344)
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhccCCcEEEecCCcccccccCccceEeEecCCCceeeccc
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhh
Q 023156 81 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES 160 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~ 160 (286)
++|..||+||+++.|+|++++++|++|++||+++.|+++|++++.+...+.....+.+.+.+.+++..|.+++..|++|.
T Consensus 146 ~~P~~viiDp~~l~tlP~~~~~~G~~e~ik~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~k~~~v~~d~~e~ 225 (344)
T cd08169 146 YPPRAVFLDLRFLKTLPPRQILSGVAEIVKVALIKDAELFELLEDHLNSLNVYSLAVLEEYINRCISIKMSVIVGDEKES 225 (344)
T ss_pred CCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHhhCCHHHHHHHHhhHHHHhhcCHHHHHHHHHHHHHHHhhhccCCcccc
Confidence 99999999999999999999999999999999999999999999876666666677889999999999999999999999
Q ss_pred hhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 023156 161 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 240 (286)
Q Consensus 161 g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~ 240 (286)
|+|+++|||||+|||+|..+.+ .++||++||+||.++++++.++|+++.++++++.++++++|+|++++..++++.+++
T Consensus 226 g~r~~ln~GHt~gHalE~~~~~-~~~HGeaVa~Gm~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~~~~~~~~~~~~~ 304 (344)
T cd08169 226 GIRRILNYGHTFGHAIELATDF-GIPHGEAVAVGMIYANVIANRLGLLSEHDYSRIYNLLKKLGLPQDHPLKLDPDSLYH 304 (344)
T ss_pred cchhhhhccchhhHHHhcCCCC-CCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcCCCCCCCHHHHHH
Confidence 9999999999999999988655 689999999999999999999999999999999999999999999865578999999
Q ss_pred HHHhchhccC-CeeEEEeecCCCcceEEcCCCCHHHHHHH
Q 023156 241 IMAVDKKVAD-GLLRLILLKGPLGNCVFTGDYDRKALDDT 279 (286)
Q Consensus 241 ~l~~dkk~~~-~~~~~~l~~~~iG~~~~~~~v~~~~~~~~ 279 (286)
+|.+|||+++ |+++|+||++ +|++++..++++++++++
T Consensus 305 ~~~~dkk~~~~~~~~~vl~~~-iG~~~~~~~v~~~~~~~a 343 (344)
T cd08169 305 YLLHDKKNGYEGNLGMILLKG-VGKPAVVNVVDKTLIKEA 343 (344)
T ss_pred HHHHhhcccCCCcEEEEEEcC-CcceEEeCCCCHHHHHhh
Confidence 9999999999 9999999997 999999888999988764
No 10
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=100.00 E-value=2.4e-64 Score=485.35 Aligned_cols=266 Identities=30% Similarity=0.477 Sum_probs=247.0
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 80 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~ 80 (286)
++++.++++.+.+++++|+|+|||+|||+++|+|||+|++|+||+||++||||+++|+|||+|||++||+..+||++|+|
T Consensus 220 l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y~RGi~~i~vPTTlla~vDssiggK~~vn~~~~KNliG~f 299 (488)
T PRK13951 220 LEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTFKRGVGLSFYPTTLLAQVDASVGGKNAIDFAGVKNVVGTF 299 (488)
T ss_pred HHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHhcCCCeEecCccHHHHHhcCCCCCeeeeCCCCCceeecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhh
Q 023156 81 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES 160 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~ 160 (286)
++|.+||+||+++.|+|++++++|++|++||+++.|.++|++ .+...+.+.+.+.+.+++.+++..|.+++.+|++|.
T Consensus 300 ~~P~~viiD~~~l~TLp~~~~~~G~aE~iK~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~si~~k~~vv~~D~~e~ 377 (488)
T PRK13951 300 RMPDYVIIDPTVTLSMDEGRFEEGVVEAFKMTILSGRGVELF--DEPEKIEKRNLRVLSEMVKISVEEKARIVMEDPYDM 377 (488)
T ss_pred CCCCEEEEchHHhcCCCHHHHHhhHHHHHHHHHhcChhHHhh--hChhhhhcccHHHHHHHHHHHHHHHHHHHccCCcch
Confidence 999999999999999999999999999999999999999887 344455566778889999999999999999999999
Q ss_pred hhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 023156 161 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 240 (286)
Q Consensus 161 g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~ 240 (286)
|+|++||||||||||||..+ +++||+|||+||.++++++.++|++++++.+++.+++++++ |+.++. .+++++++
T Consensus 378 ~~R~~LN~GHTigHalE~~~---~i~HG~AVa~gm~~~~~~s~~~g~~~~~~~~~i~~~l~~~~-p~~~~~-~~~~~~~~ 452 (488)
T PRK13951 378 GLRHALNLGHTLGHVYEMLE---GVPHGIAVAWGIEKETMYLYRKGIVPKETMRWIVEKVKQIV-PIPVPS-VDVEKARN 452 (488)
T ss_pred hHHHHHhccchHHHHHHhcc---CCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CCCCCC-CCHHHHHH
Confidence 99999999999999999864 58999999999999999999999999999999999999985 988764 58899999
Q ss_pred HHHhchhccC-CeeEEEeecCCCcceEEcCCCCHHH
Q 023156 241 IMAVDKKVAD-GLLRLILLKGPLGNCVFTGDYDRKA 275 (286)
Q Consensus 241 ~l~~dkk~~~-~~~~~~l~~~~iG~~~~~~~v~~~~ 275 (286)
.|.+|||+++ ++++||+|++ +|++.+. ++++.+
T Consensus 453 ~~~~dkK~~~~~~i~~vl~~~-iG~~~~~-~~~~~~ 486 (488)
T PRK13951 453 LILNDKKILKGSRVRLPYVKE-IGKIEFL-EVDPLE 486 (488)
T ss_pred HHHHhcCcCCCCcEEEEEEcC-CCCeeEe-cccccc
Confidence 9999999986 6999999997 9998765 555443
No 11
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=100.00 E-value=1.7e-63 Score=465.02 Aligned_cols=282 Identities=59% Similarity=0.954 Sum_probs=265.6
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 80 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~ 80 (286)
++++.++++.+++++++|.|+||||||||++|+||++|+.|++|+|+++||||+++++|+++++|+++|.+..||.+|.+
T Consensus 75 ~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~~gip~i~IPTT~~s~~ds~~~~k~~i~~~~~K~~~g~~ 154 (358)
T PRK00002 75 LETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATYMRGIRFIQVPTTLLAQVDSSVGGKTGINHPLGKNLIGAF 154 (358)
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHhcCCCCEEEcCchhhhccccCcCCceecCCcccceeeeec
Confidence 36789999999999999999999999999999999999999999999999999989999999999999998889999999
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhh
Q 023156 81 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES 160 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~ 160 (286)
++|.++|+||+++.|+|++++++|++|++||+++.||++|++++++..++.+...+.+.+.+.+++..|.+++.+|+++.
T Consensus 155 ~~P~~vi~Dp~l~~tlP~~~~~~G~~d~ik~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~k~~~v~~d~~e~ 234 (358)
T PRK00002 155 YQPKAVLIDLDFLKTLPERELRAGLAEVIKYGLIADPEFFEWLEANVDALLALDGEALEEAIARSCEIKADVVAADERES 234 (358)
T ss_pred CCCceEEEcHHHHccCCHHHHHhhHHHHHHHHhhCCHHHHHHHHhhHHHHhhcCHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 99999999999999999999999999999999999999999999766666666678889999999999999999999999
Q ss_pred hhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 023156 161 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 240 (286)
Q Consensus 161 g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~ 240 (286)
|+|+++||||||+||||..+++.+++||++||+||.++++++.++|.++.+..+++.++|+++|+|++.+ .++++.+++
T Consensus 235 g~r~~ln~GHt~~HalE~~~~~~~~~HG~aVa~Gm~~~~~l~~~~g~~~~~~~~~~~~~l~~~g~p~~~~-~~~~~~~~~ 313 (358)
T PRK00002 235 GLRALLNFGHTFGHAIEAETGYGKWLHGEAVAIGMVMAARLSERLGLLSEADAERIRALLERAGLPTSLP-DLDAEALLE 313 (358)
T ss_pred cccHHHhccchHHHHHhcccCCCCcChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCCC-CCCHHHHHH
Confidence 9999999999999999998654358999999999999999999999999999999999999999999987 579999999
Q ss_pred HHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHHh
Q 023156 241 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAFC 284 (286)
Q Consensus 241 ~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~~ 284 (286)
+|..|||+|+++++|++|+. +|++.+..+++++++.++++++.
T Consensus 314 ~l~~dkk~~~~~~~~vl~~~-ig~~~~~~~v~~~~l~~~~~~~~ 356 (358)
T PRK00002 314 AMKRDKKVRGGKLRFVLLKG-IGKAVIAEDVDDELLLAALEECL 356 (358)
T ss_pred HHHHhhhccCCCEEEEEecC-CccEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999997 99999988899999999998654
No 12
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=100.00 E-value=1.8e-62 Score=455.97 Aligned_cols=278 Identities=50% Similarity=0.797 Sum_probs=261.1
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
+++.++++.+++++++|.|+||||||||++|+||++|+.|++|+|+++||||+++++|+++++|++++.+..||.++.++
T Consensus 65 ~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~~~~p~i~VPTT~~a~~ds~~~~k~~i~~~~~kn~~~~~~ 144 (344)
T TIGR01357 65 ETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATYMRGIRFIQVPTTLLAMVDSSVGGKTGINFPGGKNLIGTFY 144 (344)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHHccCCCEEEecCchhheeccccCcceeEeCCCCceEEeecc
Confidence 67999999999999999999999999999999999999999999999999999899999999999999988999999999
Q ss_pred CcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcC-CHHHHHHHHHHHHHhhhhhhccChhhh
Q 023156 82 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMAR-DPRAFAYAIKRSCENKAEVVSLDEKES 160 (286)
Q Consensus 82 ~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~-~~~~l~~~i~~~~~~~~~~v~~d~~~~ 160 (286)
.|.+||+||+++.|+|++++++|++|++||+++.||++|++++.+...+... +++.+.+++.+++..|.+++.+|++|.
T Consensus 145 ~P~~viiDp~l~~tlP~~~~~~G~~d~ik~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~i~~k~~~~~~d~~e~ 224 (344)
T TIGR01357 145 QPKAVLIDPDFLKTLPDRELRSGMAEVIKHGLIADAELFDELESNDKLVLRLQELEHLEELIKRSIEVKASIVAEDEKES 224 (344)
T ss_pred CCceEEEcHHHHhhCCHHHHHhHHHHHHHHHhhCCHHHHHHHHhhHHHHhccccHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 9999999999999999999999999999999999999999998865554443 477889999999999999999999999
Q ss_pred hhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHH
Q 023156 161 GLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMTVEMFKS 240 (286)
Q Consensus 161 g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~ 240 (286)
|+|+++||||||+||||.++++..++||++||+||.+.+++++++|.++++.++++.++++++|+|+++++.++++++++
T Consensus 225 ~~r~~l~~GHt~~Hale~~~~~~~~~HG~avaig~~~~~~la~~~~~~~~~~~~~i~~~l~~~g~p~~~~~~~~~~~~~~ 304 (344)
T TIGR01357 225 GLRAILNFGHTIGHAIEAEAGYGKIPHGEAVAIGMVCEAKLSERLGLLPAELIERLVQLLKRYGLPTDLPKDLDVDELLN 304 (344)
T ss_pred cchHHhhcchhHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCccCCCCCCHHHHHH
Confidence 99999999999999999987663499999999999999999999999988889999999999999999876679999999
Q ss_pred HHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHH
Q 023156 241 IMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 280 (286)
Q Consensus 241 ~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~ 280 (286)
+|..|||+|+|++++++|++ +|++.+..+++++++.+++
T Consensus 305 ~l~~dkk~~~~~~~~~l~~~-iG~~~~~~~v~~~~l~~~~ 343 (344)
T TIGR01357 305 AMLNDKKNSGGKIRFVLLEE-IGKAALASEVPDEMVLELL 343 (344)
T ss_pred HHHHhhhccCCcEEEEEecC-CccEEEeCCCCHHHHHHHh
Confidence 99999999999999999997 9999998889999998875
No 13
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=100.00 E-value=2.6e-62 Score=455.20 Aligned_cols=275 Identities=35% Similarity=0.555 Sum_probs=256.5
Q ss_pred ChHHHHHHHHHHHcCCCCC-ceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccc
Q 023156 1 MDTLMKVFDKAIESRLDRR-CTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGA 79 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~-d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~ 79 (286)
++++.++++.+++.+++|+ |+|||||||+++|+|||+|++|+||+|+++||||+++|+|+++|+|++||++..||.+|.
T Consensus 70 ~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~~rg~p~i~VPTT~lA~vD~~~g~K~~i~~~~~kn~ig~ 149 (354)
T cd08199 70 MDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLYRRGTPYVRIPTTLVGLIDAGVGIKTGVNFGGYKNRLGA 149 (354)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhcCCCCEEEEcCccceeeecCCCCceEEeCCCCcccccc
Confidence 3689999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcC-----C---HHHHHHHHHHHHHhhhh
Q 023156 80 FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMAR-----D---PRAFAYAIKRSCENKAE 151 (286)
Q Consensus 80 ~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~-----~---~~~l~~~i~~~~~~~~~ 151 (286)
|++|..||+||+++.|+|++++++|++|++||+++.||++|++++++...+++. + .+.+.+++.+++..|..
T Consensus 150 ~~~P~~viiD~~~l~tlP~~~~~~G~~e~ik~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~i~~k~~ 229 (354)
T cd08199 150 YHPPTLTLLDRSFLATLPERHIRNGLAEIIKMAVIKDAELFELLEEHGPRLIETRFGGDDGELAAAADEILGRAIQGMLE 229 (354)
T ss_pred CCCCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhcccccccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999876655432 1 34567789999999999
Q ss_pred hhccChhhhhhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCC
Q 023156 152 VVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPD 231 (286)
Q Consensus 152 ~v~~d~~~~g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~ 231 (286)
++.+|++++|+|+++|+|||++|++|..+.+ .++|||+||+||.++++++.+.|.++.++++++.++++++|+|++++.
T Consensus 230 vv~~d~~e~g~r~~ln~GHT~~halE~~~~~-~~~HGeaVa~Gm~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~~~~ 308 (354)
T cd08199 230 ELGPNLWESDLDRPVDYGHTFSPGLEMRALP-ELLHGEAVAIDMALSAVLAYRRGLISEEERDRILALMRRLGLPVWHPL 308 (354)
T ss_pred HhhcCccccCchhhhccccchhHHHHhcCCC-CCChHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCcCCCC
Confidence 9999999999999999999999999987656 799999999999999999999999999999999999999999999753
Q ss_pred CCCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHH
Q 023156 232 TMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDD 278 (286)
Q Consensus 232 ~~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~ 278 (286)
++++.++++|.+|||+|+|+++|+||++ +|++.+..+++++++++
T Consensus 309 -~~~~~~~~~l~~dkk~~~~~~~~vl~~~-ig~~~~~~~~~~~~~~~ 353 (354)
T cd08199 309 -LDPDLLWAALKDTVRHRDGLQRAPLPTG-IGECTFLNDVTEEELER 353 (354)
T ss_pred -CCHHHHHHHHHhccCccCCeEEEEEECC-CCCEEEeCCCCHHHHHh
Confidence 6899999999999999999999999997 99999877999998865
No 14
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=100.00 E-value=7.3e-61 Score=449.81 Aligned_cols=280 Identities=36% Similarity=0.517 Sum_probs=261.9
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
+++.++++.+.+.+++|.|+|||+||||++|+|||+|+.|+||+|+++||||+++++|+++|+++++|+...||.+|.|+
T Consensus 95 ~~v~~i~~~~~~~~~dr~d~IIaiGGGsv~D~ak~iA~~~~rgip~I~IPTTlla~vda~~g~~~~v~~~~~kn~~g~~~ 174 (389)
T PRK06203 95 ALVEALHAAINRHGIDRHSYVLAIGGGAVLDMVGYAAATAHRGVRLIRIPTTVLAQNDSGVGVKNGINAFGKKNFLGTFA 174 (389)
T ss_pred HHHHHHHHHHHHcCCCCCceEEEeCCcHHHHHHHHHHHHhcCCCCEEEEcCCCccccCCCccchhheecCCCceeecccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred CcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhc--cChhh
Q 023156 82 QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVS--LDEKE 159 (286)
Q Consensus 82 ~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~--~d~~~ 159 (286)
+|.+||+||+++.|+|++++++|++|++||+++.|+.+|++++++...+.+.+++.+.+++.+++..|.+++. .|++|
T Consensus 175 ~P~~vi~Dp~~l~tlP~~~~~~G~~e~iK~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~k~~~v~~~~d~~e 254 (389)
T PRK06203 175 PPYAVINDFAFLTTLPDRDWRAGLAEAVKVALIKDAAFFDWLEAHAAALAARDPEAMEELIYRCAELHLEHIAGGGDPFE 254 (389)
T ss_pred CCCEEEEcHHHHhhCCHHHHHhHHHHHHHHHhhcCHHHHHHHHHhHHHHhcCCHHHHHHHHHHHHHHHHhhcccCCCccc
Confidence 9999999999999999999999999999999999999999999887777777778889999999999999998 99999
Q ss_pred hhhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC-CC---H
Q 023156 160 SGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT-MT---V 235 (286)
Q Consensus 160 ~g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~-~~---~ 235 (286)
.|.|+.+|+|||++|++|..+.| +++||++||+||++..+++.++|+++++..+|+.++++++|+|+..+.. .+ .
T Consensus 255 ~g~r~~Ln~gHt~gHAlE~~~~~-~i~HGeAVAiGm~~~~~ls~~~g~~~~~~~~ri~~l~~~lglp~~~~~~~~~e~~~ 333 (389)
T PRK06203 255 FGSSRPLDFGHWSAHKLEQLTNY-ALRHGEAVAIGIALDSLYSYLLGLLSEAEAQRILALLRALGFPLYHPALATRDSKG 333 (389)
T ss_pred cCCcCccccchhhhhhhhhcCCC-CCCcHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCccccccCcccchH
Confidence 99999999999999999997656 6999999999999999999999999999999999999999999876543 22 3
Q ss_pred HHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHH
Q 023156 236 EMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 236 ~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~ 283 (286)
+.++++|.+|||+++|+++|+||++ +|++.+..+++++++++++++.
T Consensus 334 ~~li~~~~~dkK~~~~~i~~vl~~~-iG~~~~~~~v~~~~l~~~~~~~ 380 (389)
T PRK06203 334 RELLKGLEEFREHLGGRLTITLLTG-IGRGIEVHEIDLDLLRQAIARL 380 (389)
T ss_pred HHHHHHHHHHhhhcCCeEEEEEEcC-CCcEEEeCCCCHHHHHHHHHHH
Confidence 6899999999999999999999997 9999988899999999998654
No 15
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=100.00 E-value=6e-48 Score=359.18 Aligned_cols=255 Identities=23% Similarity=0.335 Sum_probs=211.5
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 80 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~ 80 (286)
++++.++++++++.++| +|||||||+++|+||++| |+||+|+|+||||+++ ||+++++++++.+ .||..+.+
T Consensus 73 ~~~v~~~~~~~~~~~~d---~IIaiGGGsv~D~ak~vA--~~rgip~I~IPTT~~t--ds~~s~~a~i~~~-~~~~~~~~ 144 (350)
T PRK00843 73 MEEVEKVEEKAKDVNAG---FLIGVGGGKVIDVAKLAA--YRLGIPFISVPTAASH--DGIASPRASIKGG-GKPVSVKA 144 (350)
T ss_pred HHHHHHHHHHhhccCCC---EEEEeCCchHHHHHHHHH--HhcCCCEEEeCCCccC--CcccCCceEEEeC-CceeeecC
Confidence 36789999999999876 999999999999999997 7899999999999863 9999999999875 57888889
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHH-HHHHhcChhHHHHHHHh-HHHh---hcCC-HHH---HHHHHHHHHHhhhh
Q 023156 81 YQPQCVLVDTDTLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQN-MHKL---MARD-PRA---FAYAIKRSCENKAE 151 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~l-k~~~~~d~~~f~~~~~~-~~~~---~~~~-~~~---l~~~i~~~~~~~~~ 151 (286)
++|.+||+||+++.|+|.+++++|++|++ ||+++.||++|++++.+ .... ++.. .+. ..+.+.+++..+.+
T Consensus 145 ~~P~~vivD~~~l~tlP~~~~~sg~~d~l~k~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~i~~~~~~i~~~~~~~~~ 224 (350)
T PRK00843 145 KPPLAVIADTEIIAKAPYRLLAAGCGDIISNYTAVKDWRLAHRLRGEYYSEYAAALSLMTAKMLIENADIIKPGLEESAR 224 (350)
T ss_pred CCCeEEEEcHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhHHHHhhccHHHHH
Confidence 99999999999999999999999999999 99988999998877531 1111 1000 011 12456677788888
Q ss_pred hhccChhhhhh--------HHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 023156 152 VVSLDEKESGL--------RATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQA 223 (286)
Q Consensus 152 ~v~~d~~~~g~--------r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~ 223 (286)
++.+|+.+.|+ |+.+|+|||++|+||+...+ +++||++||+||+++++++. +..+++.++++++
T Consensus 225 ~v~~~~~~~G~~~~~~g~~r~~l~~gHti~hale~~~~~-~~~HGeaVa~G~~~~~~l~~-------~~~~~i~~ll~~~ 296 (350)
T PRK00843 225 LVVKALISSGVAMSIAGSSRPASGSEHLFSHALDRLAPG-PALHGEQCGVGTIIMMYLHG-------GDWRKIRDALKKI 296 (350)
T ss_pred HHHHHHHHhHHHHhhcCCCCCcchHHHHHHHHHHHcCCC-CCccHHHHHHHHHHHHHHcC-------ccHHHHHHHHHHc
Confidence 99999999998 77899999999999987543 68999999999999988853 3478999999999
Q ss_pred CCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHH
Q 023156 224 KLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 281 (286)
Q Consensus 224 glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~ 281 (286)
|+|+++++. ++.+++.+.|..|||.|++|++| ++. ..++++.++++++
T Consensus 297 glP~~l~~l~~~~~~~~~~~~~dk~~r~~r~t~--l~~--------~~~~~~~~~~~~~ 345 (350)
T PRK00843 297 GAPTTAKELGIDDEYIIEALTIAHTIRPERYTI--LGD--------RGLTREAAEKAAR 345 (350)
T ss_pred CCCCCHHHcCCCHHHHHHHHHHHhhcCcccEEe--ecC--------CCCCHHHHHHHHH
Confidence 999998764 78899999999999999897665 443 2455677777765
No 16
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=100.00 E-value=1.8e-43 Score=326.95 Aligned_cols=233 Identities=19% Similarity=0.255 Sum_probs=191.6
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhh-ccccCcCcceeeecCCcccccccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMA-QVDSSVGGKTGINHRLGKNLIGAF 80 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~-~~das~g~k~~i~~~~~k~~~g~~ 80 (286)
+++.++++.+++ |.|+|||||||+++|+|||+| +++|+|+++||||+++ +.++++++ +..++||..+.+
T Consensus 68 ~~v~~~~~~~~~----~~d~IIaiGGGsv~D~aK~iA--~~~gip~I~VPTT~~~~g~~s~v~~----~~~~~k~~~~~~ 137 (332)
T cd08549 68 YELGEVLIKLDK----DTEFLLGIGSGTIIDLVKFVS--FKVGKPFISVPTAPSMDGYASSVAS----LIVNGKKRSVSA 137 (332)
T ss_pred HHHHHHHHHhhc----CCCEEEEECCcHHHHHHHHHH--HHcCCCEEEeCCCcccCcccCCceE----EeeCCceEeecC
Confidence 577888888887 455999999999999999997 7899999999999854 23455543 234578888899
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHH-HHHHhcChhHHHHHHHhHHHhhcCCH-HHHHHHHHHHHHhhhhhhccChh
Q 023156 81 YQPQCVLVDTDTLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDP-RAFAYAIKRSCENKAEVVSLDEK 158 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~l-k~~~~~d~~~f~~~~~~~~~~~~~~~-~~l~~~i~~~~~~~~~~v~~d~~ 158 (286)
++|..||+||+++.|+|++++++|++|++ ||+.+.||.++++.+.+ .++... ..+.+.+.+++..+.+++..|+.
T Consensus 138 ~~P~~viiDp~~l~tlP~~~~~ag~~D~l~k~~~~~d~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~d~~ 214 (332)
T cd08549 138 VYPEIIVGDIDIISQAPYEFITAGFGDVISNYTALADWYISSVITGE---TYSDDIAAMVKESINKVIDASTGILGRDEK 214 (332)
T ss_pred CCCcEEEEcHHHHHhCCHHHHHHhHHHHHHhhhHHHHHHHHHHhcCc---ccCHHHHHHHHHHHHHHHhhhhhcccCCHH
Confidence 99999999999999999999999999999 88988899888766431 111111 22356777888888778888886
Q ss_pred h----------hhhHHhhccc---------hhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 023156 159 E----------SGLRATLNLG---------HTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNI 219 (286)
Q Consensus 159 ~----------~g~r~~l~~G---------Ht~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~ 219 (286)
+ .|++ ++|+| |+|+|+||+..++ +++||++||+||+++++++.+ ..+++.++
T Consensus 215 ~~~~l~~a~~~~G~~-~~n~G~s~~~s~~~Hti~Hale~~~~~-~~~HGeaVaigm~~~~~l~~~-------~~~~i~~l 285 (332)
T cd08549 215 SIKELVEALIINGIA-MLIAGNSRPASGAEHHLSHALDMREPE-PHLHGTQVGVTTIIISEIHHY-------TLDDIKKF 285 (332)
T ss_pred HHHHHHHHHHHhhHh-heecCCCCCcchHHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHHHhcc-------cHHHHHHH
Confidence 6 6775 36666 9999999998654 688999999999999999863 68999999
Q ss_pred HHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEE
Q 023156 220 LQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLI 256 (286)
Q Consensus 220 l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~ 256 (286)
++++|+|+++++. ++.++++++|.+|||.|++|.++.
T Consensus 286 l~~~glp~~~~~~~~~~~~~~~~~~~dkk~~~~r~t~l 323 (332)
T cd08549 286 LSKKGSLNRDLNLIGVSEVLLYAMLNAHKIIPKRYTIL 323 (332)
T ss_pred HHHcCCCCCHHHcCCCHHHHHHHHHHhhhcCCCceeee
Confidence 9999999998765 689999999999999999987653
No 17
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=100.00 E-value=4e-41 Score=311.37 Aligned_cols=248 Identities=19% Similarity=0.211 Sum_probs=188.5
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
++++++.+.+.+.+ |.|+|||||||+++|+|||+|+ ++++|+++||||+++ |+.+++.+.++.+.+||..+.+
T Consensus 61 ~~~~~i~~~~~~~~--~~d~iIaiGGGsv~D~aK~vA~--~~~~p~i~vPTt~~t--gs~~s~~a~i~~~~~k~~~~~~- 133 (331)
T cd08174 61 SDAEEIGARARSIP--NVDAVVGIGGGKVIDVAKYAAF--LRGIPLSVPTTNLND--DGIASPVAVLTDEGGKRSSLAA- 133 (331)
T ss_pred cCHHHHHHHHHhcc--CCCEEEEeCCcHHHHHHHHHHh--hcCCCEEEecCcccc--CccccCceEEEeCCCeeeecCC-
Confidence 46788888988887 6779999999999999999975 799999999999987 5666666778888889888887
Q ss_pred CcceeeeehHhhcCCCHHHHHhhHHHHH-HHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhh
Q 023156 82 QPQCVLVDTDTLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES 160 (286)
Q Consensus 82 ~P~~viiD~~~l~tlP~~~~~~G~~D~l-k~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~ 160 (286)
+|.+||+||+++.|+|++++++|++|++ |+..+.||+++.+.... ..+...+.+.+.+.+.+....+. ..| +.
T Consensus 134 ~P~~vi~D~~~l~tlP~~~~~aG~~Dalak~~~~~d~~~~~~~~~~---~~~~~~~~~a~~~~~~l~~~~~~-~~d--~~ 207 (331)
T cd08174 134 IPIGVVIDLDVIRSAPRRLILAGIGDLISNITALADWELAHERGGE---PVDGLAALLSRAAAEAVLRHPGS-ITD--PE 207 (331)
T ss_pred CCcEEEEcHHHHHhCCHHHHHhhHHHHHHhcchHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHhcccc-cCC--HH
Confidence 9999999999999999999999999999 77777788765432110 00001122222222222111111 122 22
Q ss_pred hhHHh--------------------hccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 023156 161 GLRAT--------------------LNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNIL 220 (286)
Q Consensus 161 g~r~~--------------------l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l 220 (286)
+.|.+ ++++|+++|++|....+ +++||++||+|++++++++.+ ..+++.+++
T Consensus 208 ~~~~l~~a~~laG~a~~~~g~~~~~~~~~H~i~h~l~~~~~~-~~~HG~~Va~g~~~~~~l~~~-------~~~~i~~~l 279 (331)
T cd08174 208 FLKTLAEGLVLSGIAMEIAGNSRPASGAEHLISHALDKLAPG-PALHGEQVGLATYFMSHLRGH-------HTERIQKLL 279 (331)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHhcCCC-ccccHHHHHHHHHHHHHHcCC-------cHHHHHHHH
Confidence 33332 36889999999987543 689999999999999988642 367999999
Q ss_pred HHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHH
Q 023156 221 QQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 280 (286)
Q Consensus 221 ~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~ 280 (286)
+++|+|+++++. ++.|++.+.|.+|||.|++ ++++++. ..+++|+.++++
T Consensus 280 ~~~glp~~~~~~g~~~~~~~~~~~~~~k~~~~--~~~~l~~--------~~~~~~~~~~~~ 330 (331)
T cd08174 280 TLTGFFLYVKELGLDKEEFLEAVQLAPSTRPG--RYTILEH--------LGLSADELRDAY 330 (331)
T ss_pred HHcCCCCCHHHcCCCHHHHHHHHHhccccCCC--ceEeeCC--------CCCCHHHHHHhh
Confidence 999999998764 7889999999999999987 6777886 467888877654
No 18
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=100.00 E-value=9.7e-40 Score=303.02 Aligned_cols=250 Identities=22% Similarity=0.344 Sum_probs=188.6
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
+++.++++.++++++| +|||||||+++|+||++| +++++|+|+||||+++ ||.++....+..+ .||..+.++
T Consensus 65 ~~v~~~~~~~~~~~~d---~iIaiGGGs~~D~aK~~a--~~~~~p~i~iPTT~~t--~s~~s~~a~i~~~-~~k~~~~~~ 136 (339)
T cd08173 65 EEVEKVESSARDIGAD---FVIGVGGGRVIDVAKVAA--YKLGIPFISVPTAASH--DGIASPRASIKGN-GKPISIKAK 136 (339)
T ss_pred HHHHHHHHHhhhcCCC---EEEEeCCchHHHHHHHHH--HhcCCCEEEecCcccC--CcccCCceEEEeC-CceEEecCC
Confidence 6789999999998766 999999999999999997 7899999999999876 5666665555544 567778888
Q ss_pred CcceeeeehHhhcCCCHHHHHhhHHHHH-HHHHhcChhHHHHHHHh-HHHhhcCCHHHHHHHHHHHHHhhhhhhccChhh
Q 023156 82 QPQCVLVDTDTLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQN-MHKLMARDPRAFAYAIKRSCENKAEVVSLDEKE 159 (286)
Q Consensus 82 ~P~~viiD~~~l~tlP~~~~~~G~~D~l-k~~~~~d~~~f~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~ 159 (286)
.|.+||+||+++.|+|++++++|++|++ |++...||.++++++.. ...+ .+.+.+...+.+..+...+ +++.+
T Consensus 137 ~P~~vi~Dp~l~~tlP~~~~~sg~~Dal~k~~~~~~~~~~~~~~~~~~~~~----~~~~a~~~~~~i~~~~~~~-~~~~~ 211 (339)
T cd08173 137 PPLAVIADTGIIAKAPRRLLAAGCGDIISNYTAVRDWRLAHRLKGEYYSEY----AASLALMSAKMVIKNADEI-KPGLE 211 (339)
T ss_pred CCeEEEEcHHHHHhCCHHHHHHhHHHHHhhhHHHHHHHHHHhccCCCCCHH----HHHHHHHHHHHHHHhHHHH-hhccH
Confidence 9999999999999999999999999999 99998999888776541 1111 1112211122222111111 22333
Q ss_pred hhhHH--------------------hhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 023156 160 SGLRA--------------------TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNI 219 (286)
Q Consensus 160 ~g~r~--------------------~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~ 219 (286)
.+.|. .+++||+++|+||..+. ++++||++||+|++++..++. ..++++.++
T Consensus 212 ~~~r~l~~a~~~~G~~~~~~g~~~~~~g~~H~~~hal~~~~~-~~~~HG~~Va~g~~v~~~l~~-------~~~~~i~~l 283 (339)
T cd08173 212 ESVRVVVKALISSGVAMSIAGSSRPASGSEHLFSHALDRLAP-GKALHGEQCGVGTIIMMYLHG-------GNWRRIRDA 283 (339)
T ss_pred HHHHHHHHHHHHhhHHHhhcCCCCCCchHHHHHHHHHHHhCC-CCCccHhHHHHHHHHHHHHcC-------ccHHHHHHH
Confidence 33332 24578999999998753 368999999999998877742 257899999
Q ss_pred HHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHH
Q 023156 220 LQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 220 l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~ 282 (286)
++++|+|+++++. +++|++.+.+.+|||.+.++... .+ | .++++++++++++.
T Consensus 284 ~~~lglp~~l~~lgi~~~~~~~~~~~~~k~~~~~~~~--~~-p-------~~~~~~~~~~~~~~ 337 (339)
T cd08173 284 LKKVGAPTTAKELGIDDEIVIEALTIAHKIRPERYTI--LG-E-------VGLTREAAEKAAEI 337 (339)
T ss_pred HHHCCCCCCHHHcCCCHHHHHHHHHHHHhcCCcceEe--ec-C-------CCCCHHHHHHHHHh
Confidence 9999999998765 78899999999999998675332 23 2 36789999888763
No 19
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=100.00 E-value=5.4e-38 Score=290.48 Aligned_cols=233 Identities=26% Similarity=0.347 Sum_probs=170.8
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcccccccc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAF 80 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~ 80 (286)
++++.++++.+++.++| +||||||||++|+||++|..+.+++|+++||||+++ +|.+++++.++.+. +.+.+.+
T Consensus 64 ~~~v~~~~~~~~~~~~d---~IIaiGGGs~~D~aK~ia~~~~~~~p~i~iPTt~~t--gse~t~~avi~~~~-~~K~~~~ 137 (332)
T cd07766 64 FEEVKEAVERARAAEVD---AVIAVGGGSTLDTAKAVAALLNRGLPIIIVPTTAAT--GSEVSPKAVITDKE-GGKTGFF 137 (332)
T ss_pred HHHHHHHHHHHHhcCcC---EEEEeCCchHHHHHHHHHHHhcCCCCEEEEeCCCch--hhccCCeEEEEeCC-CceEEec
Confidence 36899999999998666 999999999999999999998899999999999988 58899999998875 4456666
Q ss_pred c--CcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcC-------------hhHHHHHHHhHHHhh-cCCHHHHHHHHHH
Q 023156 81 Y--QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRD-------------AEFFEWQEQNMHKLM-ARDPRAFAYAIKR 144 (286)
Q Consensus 81 ~--~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d-------------~~~f~~~~~~~~~~~-~~~~~~l~~~i~~ 144 (286)
+ .|.++|+||+++.++|++++++|++|+++|++... .+.++.+..+..... ..+.+...+++..
T Consensus 138 ~~~~P~~vi~Dp~l~~t~P~~~~~~g~~Dal~h~~E~~~~~~~~~~~~~~a~~~~~~l~~~l~~~~~~~~~~ar~~l~~a 217 (332)
T cd07766 138 YPDNPDVVFVDTDITKGLPPRQVASGGVDALSHALEAYSTKKSWPIADALAEKALETIEEDLPKAIEPGDYDALEKVVWA 217 (332)
T ss_pred cCCccCEEEEChhhhhCCCHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 6 89999999999999999999999999999998543 112222222211111 1112222223333
Q ss_pred HHHhhhhhhccChhhhhhHHhhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 023156 145 SCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAK 224 (286)
Q Consensus 145 ~~~~~~~~v~~d~~~~g~r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~g 224 (286)
++.....+.. ..|..++++|+++|+|+.. + +++||++||++++.++++..+.+....+.++++.+|++++|
T Consensus 218 s~~ag~~~~~------~~~~~~~~~H~i~h~l~~~--~-~i~HG~ava~~l~~~~~~~~~~~~~~~~~~~~i~~l~~~lg 288 (332)
T cd07766 218 ATLAGNGLFA------AKSGGLGAAHAIGHALTAL--E-GIPHGEAVAVGLPAVLKVANDMNPEIEHAIEAVFKFLEDLG 288 (332)
T ss_pred HHHHHHHHcC------CCcccchHhHHhhCHHhhC--c-CCChHHHHHHHHHHHHHHhhhcCHhHHHHHHHHHHHHHHCC
Confidence 3222211111 0345678889999999986 3 79999999999999999877644333457899999999999
Q ss_pred CCCCCCCC-CCHHH---HHHHHHhchhc
Q 023156 225 LPTAPPDT-MTVEM---FKSIMAVDKKV 248 (286)
Q Consensus 225 lp~~l~~~-~~~~~---~~~~l~~dkk~ 248 (286)
+|+++++. ++.++ +.+.+..|++.
T Consensus 289 lP~~l~e~g~~~~~~~~~~~~~~~~~~~ 316 (332)
T cd07766 289 APTDLADLGVSKEDIDKLAEKALDDKET 316 (332)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHHhcccc
Confidence 99999765 55544 34444445443
No 20
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=100.00 E-value=1.2e-35 Score=276.60 Aligned_cols=237 Identities=22% Similarity=0.329 Sum_probs=172.1
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
+++.++++.+++ ++ |+||||||||++|+||++| +++++|+++||||.++ +++++...++..++.|..+ .++
T Consensus 68 ~~v~~~~~~~~~-~~---d~IIaIGGGs~~D~aK~vA--~~~~~p~i~IPTTagt--~g~~~~~~~v~~~g~K~~~-~~~ 138 (348)
T cd08175 68 KAVGRVLKELER-DT---DLIIAVGSGTINDITKYVS--YKTGIPYISVPTAPSM--DGYTSSGAPIILNGFKKTY-QAV 138 (348)
T ss_pred HHHHHHHHHhhc-cC---CEEEEECCcHHHHHHHHHH--HhcCCCEEEecCcccc--cCccCCCceEecCCccccc-cCC
Confidence 567888888876 55 5999999999999999996 6799999999999543 3444433344333334444 357
Q ss_pred CcceeeeehHhhcCCCHHHHHhhHHHHH-HHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhh-
Q 023156 82 QPQCVLVDTDTLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKE- 159 (286)
Q Consensus 82 ~P~~viiD~~~l~tlP~~~~~~G~~D~l-k~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~- 159 (286)
+|..+|+||+++.|+|++++++|++|++ |+....+|.+.+.+..+ .+.....+.+.+.+.+++..+.++...|+.+
T Consensus 139 ~P~~viiDp~l~~slP~~~~~sg~~Dale~~~~~~~~~~~~~~~~~--~~~~~a~~~i~~~l~~~~~~~~~~~~~d~~ar 216 (348)
T cd08175 139 APIAIFADTDILANAPQRMIAAGFGDLLGKYTALADWKIAHILTGE--YYCETVWDLVEEALEKCLESADGLAARDEEAI 216 (348)
T ss_pred CCeEEEEChHHHHhCCHHHHHhhHHHHHHhcccHHhHHHHHHhcCC--cCcHHHHHHHHHHHHHHHhhHHhhhcCCHHHH
Confidence 8999999999999999999999999999 87766666655433210 0000011234556666666665655566554
Q ss_pred hhhHHh-----------------hccchhHHHHhHhccC---CCCCChHHHHHHHHHHHHHHHHHcCCC------CHHHH
Q 023156 160 SGLRAT-----------------LNLGHTFGHAIETGFG---YGQWLHGEAVAAGMVMAVDMSYRLGWI------DDSIV 213 (286)
Q Consensus 160 ~g~r~~-----------------l~~GHt~~Hale~~~~---~~~~~HG~aVaig~~~~~~l~~~~g~~------~~~~~ 213 (286)
.+++.. ++++|+++|++|..+. +.+++||++||+++++++++..+.+.. ..+.+
T Consensus 217 ~~l~~a~~laG~a~~~~g~s~~~~g~~Hal~h~l~~~~~~~~~~~~~HG~avai~lp~~~~~~~~~~~~~~~~~~~~~~~ 296 (348)
T cd08175 217 KQLMEALILSGLAMQLVGSSRPASGAEHHLSHYWEMEFLNRGKKPLLHGEKVGVGTLIVAALYERLLKKDLEGLDKLKAS 296 (348)
T ss_pred HHHHHHHHHhhHHHHhcCCCCCCccHHHHHHHHHHHhcccccCCcccchhHHHHHHHHHHHHHHHHHhccchhhcccccH
Confidence 233322 2357999999996532 347999999999999998887654321 23468
Q ss_pred HHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhcc
Q 023156 214 KRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVA 249 (286)
Q Consensus 214 ~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~ 249 (286)
+++.+|++++|+|+++++. ++.+++.+.+..++|+|
T Consensus 297 ~~i~~l~~~lglP~~l~~~gv~~~~l~~~~~~a~~~~ 333 (348)
T cd08175 297 AKIEELLKKVGAPTHPEEIGIDKELFRKSLILAKEIR 333 (348)
T ss_pred HHHHHHHHHCCCCCCHHHcCCCHHHHHHHHHHHHHhh
Confidence 9999999999999998765 78899988889999988
No 21
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=100.00 E-value=5.1e-35 Score=268.47 Aligned_cols=257 Identities=21% Similarity=0.268 Sum_probs=185.1
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccc-c
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGA-F 80 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~-~ 80 (286)
++++++...+.+.+. |+|||||||+++|+||++| +.+|+|||+|||++|. |+.+++..++-+++..+.... .
T Consensus 71 ~ev~~~~~~~~~~~~---d~vIGVGGGk~iD~aK~~A--~~~~~pfIsvPT~AS~--Da~~Sp~aSv~~~~~g~~~~~~~ 143 (360)
T COG0371 71 EEVERLAAEAGEDGA---DVVIGVGGGKTIDTAKAAA--YRLGLPFISVPTIAST--DAITSPVASVIYNGKGDKYSFLA 143 (360)
T ss_pred HHHHHHHHHhcccCC---CEEEEecCcHHHHHHHHHH--HHcCCCEEEecCcccc--ccccCCceeeEEcCCCceeeeec
Confidence 456666666665544 5999999999999999994 7899999999999888 899988777777654222222 2
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHH-HHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhh
Q 023156 81 YQPQCVLVDTDTLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKE 159 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~l-k~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~ 159 (286)
..|..||+|++++..+|.|++++|++|++ |+....||.+...+.... . ....-.+.++..+.+......+..+. +
T Consensus 144 ~~P~~vivD~evI~~AP~r~L~AGiGD~lakw~e~~dw~~a~~~~~e~--~-~~~a~~la~~~~~~~~~~~~~i~~~~-~ 219 (360)
T COG0371 144 KAPDAVIVDTEVIAAAPRRLLAAGIGDALAKWTEARDWKLAHRLTGEG--Y-SEAAAALAKMCAKTLIEAAEEIKNAL-E 219 (360)
T ss_pred CCCcEEEEcHHHHHhChHHHHHhcchHhhhhHHHHHHHHHhcccccch--h-hHHHHHHHHHHHHHHHHHHHHHHhcc-h
Confidence 57999999999999999999999999999 999988887654332211 0 01112233333333333333222221 2
Q ss_pred hhhHH--------------------hhccchhHHHHhHhcc-CCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHH--HH
Q 023156 160 SGLRA--------------------TLNLGHTFGHAIETGF-GYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVK--RV 216 (286)
Q Consensus 160 ~g~r~--------------------~l~~GHt~~Hale~~~-~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~--~i 216 (286)
.+.|. .++..|.|+|+|+.+. ..++.+|||+||+|+++++++..+ ..++++ ++
T Consensus 220 ~~~~~~vealI~sg~~m~g~G~s~p~sgaeH~~hh~Lt~l~~~~h~~lHGekVa~Gtlv~~~L~~~----~~~~~~~~~i 295 (360)
T COG0371 220 EAVRPLVEALIESGTAMSGLGSSRPASGAEHAFHHGLTMLPPETHHALHGEKVAYGTLVQLYLHGK----NWEEIEARKI 295 (360)
T ss_pred HHHHHHHHHHHHhcceEEeccCCCCccHHHHHHHHHHHhcccCCccccchhHHHHHHHHHHHHhcC----chhhhhHHHH
Confidence 33332 3445599999999986 334689999999999999999653 223343 49
Q ss_pred HHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHH
Q 023156 217 HNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 217 ~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~ 282 (286)
+++++++|+|+++.+. ++.+...+++...++.|..+.. ++..| ..++.|.+.++++.
T Consensus 296 ~~~~~~~glPttl~elgl~~~~~~eal~vAh~~r~~r~T--Il~~~-------~~~t~e~~~~a~~~ 353 (360)
T COG0371 296 RDFLKKVGLPTTLAELGLDDDEVIEALTVAHAIRPERET--ILGMP-------FGLTPEAARAALEA 353 (360)
T ss_pred HHHHHHcCCCcCHHHcCCCchhHHHHHHHHHHhCCCCcc--cccCC-------CCCCHHHHHHHHHH
Confidence 9999999999999886 7888889999999888866433 23321 26789999888874
No 22
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=100.00 E-value=2e-33 Score=249.96 Aligned_cols=252 Identities=23% Similarity=0.352 Sum_probs=191.3
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh----------------cCCcEEEeccchhhccccCcCc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL----------------RGVSFIQIPTTVMAQVDSSVGG 64 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~----------------~gip~i~VPTTl~~~~das~g~ 64 (286)
++++.+.++.++++++| +|+|||||||+|.+||||++.. ..+|+.+|-|...+. |-+.+
T Consensus 71 ~~Tv~kaV~i~kee~id---flLAVGGGSViD~tK~IAa~a~y~GD~Wdi~~~~~~i~~alP~g~VLTLpATG--SEmn~ 145 (384)
T COG1979 71 LETLMKAVEICKEENID---FLLAVGGGSVIDGTKFIAAAAKYDGDPWDILTKKHKIKDALPIGTVLTLPATG--SEMNA 145 (384)
T ss_pred HHHHHHHHHHHHHcCce---EEEEecCcchhhhHHHHHhhcccCCChHHHHhcCCccccccccceEEEccccc--cccCC
Confidence 47899999999999998 9999999999999999998842 468888886654432 22222
Q ss_pred ceeeecCCcccccc--c-ccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHH
Q 023156 65 KTGINHRLGKNLIG--A-FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYA 141 (286)
Q Consensus 65 k~~i~~~~~k~~~g--~-~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~ 141 (286)
-..|+....|.+.+ + ..+|+|.++||+++.|+|+||+++|++|++.|.+ ++||.+..+ ..-+|.++|.
T Consensus 146 ~aVIt~~~t~eK~~~~S~~v~PkFsvLDP~~tyTlP~~Q~a~G~vDa~sHv~---EqYft~~~~------a~lQDr~aE~ 216 (384)
T COG1979 146 GAVITNEETKEKLGFGSPLVFPKFSVLDPEVTYTLPKRQTANGVVDAFSHVF---EQYFTYPVN------AKLQDRFAEG 216 (384)
T ss_pred CceecccccccceeccCcccccceEEeCCcceeecChHHhhhhHHHHHHHHH---HHHhcCcCC------chhhHHHHHH
Confidence 22355544444443 2 3589999999999999999999999999999999 888876433 1125678888
Q ss_pred HHHHHHhhhhhhccChhhhhhHH--------hhc----cc-------hhHHHHhHhccCCCCCChHHHHHHHHHHHHHH-
Q 023156 142 IKRSCENKAEVVSLDEKESGLRA--------TLN----LG-------HTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM- 201 (286)
Q Consensus 142 i~~~~~~~~~~v~~d~~~~g~r~--------~l~----~G-------Ht~~Hale~~~~~~~~~HG~aVaig~~~~~~l- 201 (286)
+.+.+....+.+.+||.++..|+ +|| .| |+++|.+.++ | +++||..+||-+|.++..
T Consensus 217 ~l~TlIe~gpk~l~~p~nY~~RanlmWaaT~AlNGli~~G~~~DWAtH~i~HelsA~--y-~i~Ha~~LAIv~P~~m~~~ 293 (384)
T COG1979 217 ILRTLIEYGPKLLEDPENYEARANLMWAATMALNGLIGAGVPQDWATHMIGHELTAL--Y-DIDHAQGLAIVLPAWMNYT 293 (384)
T ss_pred HHHHHHHHhHHHhcCCccHHHHHHHHHHHHHHhhchhhcCCCCchhhhhhcchhhhh--c-CCccccceeEechHHHHHH
Confidence 88888888889999999998886 333 44 9999999986 4 899999999999977643
Q ss_pred -----------HHH-cCCCC-------HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHh-chhccCCeeEEEeecC
Q 023156 202 -----------SYR-LGWID-------DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAV-DKKVADGLLRLILLKG 260 (286)
Q Consensus 202 -----------~~~-~g~~~-------~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~-dkk~~~~~~~~~l~~~ 260 (286)
+.+ +|+.+ .+.++++++|++++|.|+++++. ++.|.+ ..+.. -.++. ...
T Consensus 294 ~~~k~~k~~q~a~rV~gi~~g~~~e~i~~~I~ktr~ff~slGv~trlsdygi~~e~~-~~~~~~l~~~~--------~~~ 364 (384)
T COG1979 294 LDQKRAKLLQYAERVWGITEGSDDEIIDEAIAKTREFFESLGVPTRLSDYGIDEEKI-PLLLEKLEKHG--------MGT 364 (384)
T ss_pred HhhcHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHcCCccchhhcCCChhhh-HHHHHHHHhcc--------ccc
Confidence 233 34431 24589999999999999999986 777763 33222 12333 233
Q ss_pred CCcceEEcCCCCHHHHHHHHHH
Q 023156 261 PLGNCVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 261 ~iG~~~~~~~v~~~~~~~~~~~ 282 (286)
+|+. ++++.++++++++.
T Consensus 365 -lG~~---~~l~~~dv~~Il~~ 382 (384)
T COG1979 365 -LGEF---GDLNLQDVREILEA 382 (384)
T ss_pred -cccc---ccccHHHHHHHHHh
Confidence 7877 78999999999875
No 23
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=100.00 E-value=8.5e-32 Score=252.37 Aligned_cols=250 Identities=21% Similarity=0.217 Sum_probs=167.5
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh--------------------hcCCcEEEeccchhhcccc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVMAQVDS 60 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~--------------------~~gip~i~VPTTl~~~~da 60 (286)
+++|.++.+.++++++| +||||||||++|+||++|..+ .+++|+|+||||+++ +|
T Consensus 63 ~~~v~~~~~~~~~~~~D---~IIavGGGs~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagt--gs 137 (367)
T cd08182 63 LEDLAAGIRLLREFGPD---AVLAVGGGSVLDTAKALAALLGAPREALEDLRIRNKERENRERALPLIAIPTTAGT--GS 137 (367)
T ss_pred HHHHHHHHHHHHhcCcC---EEEEeCCcHHHHHHHHHHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCCc--hh
Confidence 36799999999999887 999999999999999998752 368999999999766 56
Q ss_pred CcCcceeeecC--Cccccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHH
Q 023156 61 SVGGKTGINHR--LGKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRA 137 (286)
Q Consensus 61 s~g~k~~i~~~--~~k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~ 137 (286)
.++....+..+ +.|..+ +.+..|..+|+||+++.++|++++++|++|++.|++ +.|+....+. .++.
T Consensus 138 e~t~~avi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~t~P~~~~a~~~~Dal~h~~---E~~~s~~~~~-------~td~ 207 (367)
T cd08182 138 EVTPFATVWDGKKGIKYSLAGPALYPDTAIVDPELTLSLPPYQTASTGLDALAHAI---ESYWSKNSTP-------ESRA 207 (367)
T ss_pred hhCCEEEEEECCCCeeeeecCCcccCCEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHHcCCCH-------HHHH
Confidence 66555455443 234333 345789999999999999999999999999999998 4444321111 1222
Q ss_pred HHHHHHHHHHhhhhhhccChhhhhhHH------------h----hccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHH
Q 023156 138 FAYAIKRSCENKAEVVSLDEKESGLRA------------T----LNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM 201 (286)
Q Consensus 138 l~~~i~~~~~~~~~~v~~d~~~~g~r~------------~----l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l 201 (286)
+.+...+.+....+...+|+.+...|. + ++..|.++|++... + +++||+++|++++...++
T Consensus 208 ~a~~a~~~i~~~l~~a~~~~~~~~ar~~l~~as~laG~a~~~~~~g~~H~l~h~l~~~--~-~i~HG~~~a~~lp~v~~~ 284 (367)
T cd08182 208 YARRAIRLILENLPPLLDEPGNLEARAKMAEASLLAGLAISNTRTTAAHAISYPLTSR--Y-GVPHGLACALTLPALLRI 284 (367)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHHhchhhcC--C-CCChHHHHHHHHHHHHHH
Confidence 222222222222333334444433332 1 12348888888764 3 799999999999876543
Q ss_pred --------------HHHcCCC-CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcce
Q 023156 202 --------------SYRLGWI-DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNC 265 (286)
Q Consensus 202 --------------~~~~g~~-~~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~ 265 (286)
++.+|.. ..+.++++.+|++++|+|+++++. ++.+++ +.+...- ..++.. . +..
T Consensus 285 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~l~~~~glp~~L~e~gv~~~~~-~~~a~~a-~~~~~~----~----~~p 354 (367)
T cd08182 285 NLEALPEDLALEAILAAFGAPSAAEAAARIEALLKELGLPTRLAEYIVTREDI-ARLVAEA-FTPERL----D----NNP 354 (367)
T ss_pred hhhhChHhhhhHHHHHHhCcccHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH-HHHHHHH-Hhcccc----c----CCC
Confidence 2223332 234689999999999999999875 676665 3343321 111111 1 112
Q ss_pred EEcCCCCHHHHHHHHH
Q 023156 266 VFTGDYDRKALDDTLY 281 (286)
Q Consensus 266 ~~~~~v~~~~~~~~~~ 281 (286)
+.+++++++++++
T Consensus 355 ---~~~t~e~i~~i~~ 367 (367)
T cd08182 355 ---VDLDEADLERLLE 367 (367)
T ss_pred ---CCCCHHHHHHHhC
Confidence 4678999988863
No 24
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=100.00 E-value=1.5e-31 Score=253.07 Aligned_cols=250 Identities=20% Similarity=0.201 Sum_probs=166.1
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh--------------h-------------cCCcEEEeccch
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------L-------------RGVSFIQIPTTV 54 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~--------------~-------------~gip~i~VPTTl 54 (286)
++++++++.++++++| +||||||||++|+||++|..+ . +++|+|+||||+
T Consensus 65 ~~v~~~~~~~~~~~~D---~IIaiGGGS~iD~AK~iA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~I~VPTTa 141 (398)
T cd08178 65 ETVRKGLELMNSFKPD---TIIALGGGSPMDAAKIMWLFYEHPEVDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTS 141 (398)
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCccHHHHHHHHHHHHhCCCcchhHhhhhhcccccccccccccCCCCCEEEeCCCC
Confidence 6789999999999887 999999999999999998631 1 578999999997
Q ss_pred hhccccCcCcceeeecCC--ccccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhh
Q 023156 55 MAQVDSSVGGKTGINHRL--GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLM 131 (286)
Q Consensus 55 ~~~~das~g~k~~i~~~~--~k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~ 131 (286)
++ +|.++....+.... .|..+ ..+..|.++|+||+++.|+|++++++|++|+++|++ +.|+.......+
T Consensus 142 gT--GSE~t~~avi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~tlP~~~~aatg~Dal~hai---E~~~s~~~~~~s--- 213 (398)
T cd08178 142 GT--GSEVTPFAVITDEKTGVKYPLADYALTPDMAIVDPELVMTMPKSLTADTGIDALTHAL---EAYVSVMASDFT--- 213 (398)
T ss_pred cc--cccccCeEEEEecCCCeeEEeeCccccCCEEEECcHhhcCCCHHHHHHHHHHHHHHHH---HHhhcCCCCHHH---
Confidence 66 46665544444432 23333 346789999999999999999999999999999999 555543222111
Q ss_pred cCCHHHHHHHHHHHHHhhhhhhccChhhh-------------hh---HHhhccchhHHHHhHhccCCCCCChHHHHHHHH
Q 023156 132 ARDPRAFAYAIKRSCENKAEVVSLDEKES-------------GL---RATLNLGHTFGHAIETGFGYGQWLHGEAVAAGM 195 (286)
Q Consensus 132 ~~~~~~l~~~i~~~~~~~~~~v~~d~~~~-------------g~---r~~l~~GHt~~Hale~~~~~~~~~HG~aVaig~ 195 (286)
+.+.+...+.+....+....|+.+. |+ +..++++|+++|+++.. | +++||+++|+++
T Consensus 214 ----d~~a~~a~~~i~~~l~~a~~~~~d~~ar~~~~~as~laG~a~~~~~lg~~Hal~h~l~~~--~-~i~HG~a~ai~l 286 (398)
T cd08178 214 ----DGLALQAIKLIFEYLPRSYKNGADPEAREKMHNAATIAGMAFANAFLGICHSMAHKLGAE--F-HIPHGLANAILL 286 (398)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhhccC--C-CCChHHHHHHHH
Confidence 2221111111111122222232222 22 22445779999999875 4 799999999999
Q ss_pred HHHHHHHH---------------------------HcCCC--C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHH--
Q 023156 196 VMAVDMSY---------------------------RLGWI--D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMF-- 238 (286)
Q Consensus 196 ~~~~~l~~---------------------------~~g~~--~-----~~~~~~i~~~l~~~glp~~l~~~-~~~~~~-- 238 (286)
+..+++.. .+|.- + ++.++++.++++++|+|+++.+. ++++++
T Consensus 287 p~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~lg~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~~~gv~~~~~~~ 366 (398)
T cd08178 287 PHVIRYNATDPPVKQAAFPQYKYPKAKERYAEIARFLGLPGKTDEEKVESLIKAIEELKKKLGIPKSIKDAGVDEEDFLA 366 (398)
T ss_pred HHHHHhhcccccccccccccccccchHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHh
Confidence 98766432 22321 1 13478889999999999999875 666654
Q ss_pred -HHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHH
Q 023156 239 -KSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 281 (286)
Q Consensus 239 -~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~ 281 (286)
++.+..+-.. +. .. .+++ +.++.+++.++++
T Consensus 367 ~~~~~a~~a~~-~~-------~~-~~nP---~~~~~~~i~~i~~ 398 (398)
T cd08178 367 KVDELAELAFD-DQ-------CT-GANP---RYPLISELKQLLL 398 (398)
T ss_pred hHHHHHHHHHh-Cc-------CC-CCCC---CCCCHHHHHHHhC
Confidence 3555553221 11 10 1222 4677888888763
No 25
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=99.98 E-value=1.7e-31 Score=248.59 Aligned_cols=255 Identities=16% Similarity=0.154 Sum_probs=164.9
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccc-c-
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLI-G- 78 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~-g- 78 (286)
++.++++++.++++++| +||||||||++|+||++|..+ ++|+++||||++++ +.++. .++.+...++.. +
T Consensus 62 ~~~v~~~~~~~~~~~~D---~iIavGGGs~~D~aK~ia~~~--~~p~i~VPTT~gtg--se~t~-~avi~~~~~~~k~~~ 133 (347)
T cd08172 62 EENIERLAAQAKENGAD---VIIGIGGGKVLDTAKAVADRL--GVPVITVPTLAATC--AAWTP-LSVIYDEDGAFLRVE 133 (347)
T ss_pred HHHHHHHHHHHHhcCCC---EEEEeCCcHHHHHHHHHHHHh--CCCEEEecCccccC--cccce-eEEEEcCCCcEeeec
Confidence 36889999999999887 999999999999999998654 89999999998763 44443 344433323221 2
Q ss_pred -cccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccCh
Q 023156 79 -AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDE 157 (286)
Q Consensus 79 -~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~ 157 (286)
....|..+|+||+++.++|++++++|++|++.|++ +.|+...........+.......+.+.+.+....+...+|+
T Consensus 134 ~~~~~P~~vi~Dp~l~~tlP~~~~~sg~~Dal~h~~---E~~~s~~~~~~~~~~~~~a~~~~~~~~~~L~~~~~~a~~~~ 210 (347)
T cd08172 134 YLKRAPELVLVDPDLIANSPVRYLVAGIGDTLAKWY---EASAISRSLDSLDLFVQLALQAAKLCRDLLLRDSEQALQDM 210 (347)
T ss_pred cccCCCCEEEECHHHHHhCCHHHHHHHHHHHHHHHH---HHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22579999999999999999999999999999988 44443211000001000012222333333322222222222
Q ss_pred hhh---h-----hHH----------------hhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 023156 158 KES---G-----LRA----------------TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIV 213 (286)
Q Consensus 158 ~~~---g-----~r~----------------~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~ 213 (286)
.+. . .|. .++.+|.++|+++.....++++||++||++++....+.. .++.+
T Consensus 211 ~~~~~~~a~~~~~r~~~~~a~~~ag~~~~~~~~g~~H~l~~~l~~~~~~~~~~HG~~~a~~l~~~~~~~~-----~~~~~ 285 (347)
T cd08172 211 AAGEVTPAFEDVVDTIIALAGLVGGFGDEYGRTAGAHAVHNGLTLLPETHDWLHGEKVAYGILVQLALEG-----REAEI 285 (347)
T ss_pred HhCCCCHHHHHHHHHHHHHhcccccccccCCchHHHHHHHHHhhcCccccccCcchHHHHHHHHHHHHcC-----CHHHH
Confidence 220 0 111 123459999999976321379999999999998776532 25679
Q ss_pred HHHHHHHHHcCCCCCCCCC-CC--HHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHH
Q 023156 214 KRVHNILQQAKLPTAPPDT-MT--VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 214 ~~i~~~l~~~glp~~l~~~-~~--~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~ 282 (286)
+++++|++++|+|+++++. ++ .++-++.+...-. .+.... . +.. .+++.+++++++++
T Consensus 286 ~~i~~l~~~lglp~~l~~~g~~~~~~~~i~~ia~~a~-~~~~~~----~---~~p---~~~~~~~i~~i~~~ 346 (347)
T cd08172 286 EELLPFYRELGLPLSLAELGLLDPTDEELQKVAAFAA-SPKETI----H---LLP---FPVTAEQLRQAIKK 346 (347)
T ss_pred HHHHHHHHHCCCCCCHHHhCCCCCCHHHHHHHHHHHc-CCcchh----h---cCC---CCCCHHHHHHHHHh
Confidence 9999999999999999874 32 2344566655322 111100 0 111 46789999998875
No 26
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=99.98 E-value=3.9e-31 Score=244.73 Aligned_cols=241 Identities=20% Similarity=0.235 Sum_probs=162.9
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHH-----hhcCCcEEEeccchhhccccCcCcceeeecCC--c
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS-----YLRGVSFIQIPTTVMAQVDSSVGGKTGINHRL--G 73 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~-----~~~gip~i~VPTTl~~~~das~g~k~~i~~~~--~ 73 (286)
++++.++++.++++++| +||||||||++|+||++|.. +++++|++.||||+++ +|.++....+..+. .
T Consensus 64 ~~~v~~~~~~~~~~~~d---~IiaiGGGs~~D~aKa~a~~~~~~~~~~~~p~i~VPTtagt--gse~t~~avi~~~~~~~ 138 (332)
T cd08180 64 IEVVAKGIKKFLDFKPD---IVIALGGGSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTSGT--GSEVTSFAVITDPETGV 138 (332)
T ss_pred HHHHHHHHHHHHhcCCC---EEEEECCchHHHHHHHHHHHHhCCCCCCCCCEEEeCCCCcc--hHhhCCeEEEEecCCCe
Confidence 36788999999999887 99999999999999998754 4568999999999766 45555544444332 2
Q ss_pred cccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhh
Q 023156 74 KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEV 152 (286)
Q Consensus 74 k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 152 (286)
|..+ +.+..|+.+|+||+++.++|++++++|.+|+++|++ |.|++..... + .+.+.+...+.+....+.
T Consensus 139 k~~~~~~~~~p~~~i~Dp~l~~~~P~~~~~~~~~Dal~h~~---E~~~s~~~~~---~----s~~~a~~a~~~l~~~l~~ 208 (332)
T cd08180 139 KYPLVDDELLPDIAILDPELVKTVPPAVTADTGMDVLTHAL---EAYVSTDAND---F----TDALAEKAIKLVFEYLPK 208 (332)
T ss_pred eEEeeCCCccCCEEEECchhhccCCHHHHHHhHHHHHHHHH---HHHHcCCCCH---H----HHHHHHHHHHHHHHHHHH
Confidence 3222 346789999999999999999999999999999998 4444321111 1 122222222222222233
Q ss_pred hccChhhhhhHH------------hhc----cchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 023156 153 VSLDEKESGLRA------------TLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRV 216 (286)
Q Consensus 153 v~~d~~~~g~r~------------~l~----~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i 216 (286)
+..|+.+...|. +.+ ..|.++|++... + +++||+++|+.++..+++ .++++
T Consensus 209 a~~~~~~~~ar~~l~~as~laG~a~~~~g~g~~Hal~~~l~~~--~-~i~HG~~~ai~lp~~l~~----------~~~~i 275 (332)
T cd08180 209 AYKDGDDLEAREKMHNASCMAGMAFNNAGLGINHSLAHALGGK--F-HIPHGRANAILLPYVIEF----------LIEAI 275 (332)
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHhCccchhhhhhhhhhhcC--C-CCChHHHHHHHHHHHHHH----------HHHHH
Confidence 334444433332 122 238888888764 3 799999999988877665 47899
Q ss_pred HHHHHHcCCCCCCCCC-CCHHHH---HHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHH
Q 023156 217 HNILQQAKLPTAPPDT-MTVEMF---KSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 281 (286)
Q Consensus 217 ~~~l~~~glp~~l~~~-~~~~~~---~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~ 281 (286)
.+|++++|+|+++.+. ++.+++ ++.+... ...+... .+.. ..+++++++++++
T Consensus 276 ~~l~~~lglp~~L~~~gi~~~~~~~~~~~~a~~-a~~~~~~--------~~~p---~~~t~~~i~~i~~ 332 (332)
T cd08180 276 KQLKKKLNIPETLKELGVDKEEFEAAIDEMAEN-ALKDACT--------PTNP---RKPTKEDLKEILE 332 (332)
T ss_pred HHHHHHcCCCCCHHHcCCCHHHHHhHHHHHHHH-HHhCcCc--------CCCC---CCCCHHHHHHHhC
Confidence 9999999999999875 666654 3433332 1111110 1122 4788999988863
No 27
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=99.98 E-value=4.6e-31 Score=244.75 Aligned_cols=244 Identities=19% Similarity=0.194 Sum_probs=166.8
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccc-ccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLI-GAF 80 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~-g~~ 80 (286)
++++++.+.+++.++| +||||||||++|+||++|. .+++|+++||||+++ +.+++...+..++.|..+ ..+
T Consensus 64 ~~v~~~~~~~~~~~~d---~IIaiGGGs~iD~aK~ia~--~~~~p~i~IPTtatg---se~t~~avit~~g~K~~i~~~~ 135 (337)
T cd08177 64 EVTEAAVAAAREAGAD---GIVAIGGGSTIDLAKAIAL--RTGLPIIAIPTTLSG---SEMTPIAGVTENGVKTTGRDPE 135 (337)
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCcHHHHHHHHHHH--HhcCCEEEEcCCchh---hhhcCeEEEecCCceeEeeCcc
Confidence 5788999999999887 9999999999999999974 469999999999844 234443444444445444 345
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhhhhccChhhh
Q 023156 81 YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAEVVSLDEKES 160 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~ 160 (286)
..|..+|+||+++.++|+++++++..|++.|++ +.|++...+. .++.+.+...+.+....+.+.+|+.+.
T Consensus 136 ~~P~~~i~Dp~l~~~~P~~~~~~~g~Dal~h~i---E~~~s~~~~~-------~s~~~a~~ai~~i~~~l~~~~~~~~~~ 205 (337)
T cd08177 136 VLPRTVIYDPELTLTTPRRLWLSSGIRAIDHAV---EALYAPDANP-------IVDLLAEEGIRALAEALPRIKADPDDL 205 (337)
T ss_pred ccCCEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCh-------HHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 789999999999999999999999999999998 5554332111 123222222223333334444555544
Q ss_pred hhHH------------hhc----cchhHHHHhHhccCCCCCChHHHHHHHHHHHHHH------------HHHcCCCCHHH
Q 023156 161 GLRA------------TLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM------------SYRLGWIDDSI 212 (286)
Q Consensus 161 g~r~------------~l~----~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l------------~~~~g~~~~~~ 212 (286)
..|. +.| ..|.++|++... | +++||+++|+-++..+++ ++.+|.-..+.
T Consensus 206 ~ar~~~~~as~~ag~a~~~~~~g~~H~l~h~l~~~--~-~~~HG~~~ai~lp~vl~~~~~~~~~~~~~~a~~l~~~~~~~ 282 (337)
T cd08177 206 DARLDALYGAWLCGTCLGSVGMGLSHKLGHVLGGT--F-GLPHAETSCIVLPHVLAFNAPAAPEALARLARALGLGAADA 282 (337)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHhhCccccC--c-CCCcHHHHHHHHHHHHHhcCcCCHHHHHHHHHHhCccHHHH
Confidence 4432 122 338888877764 4 799999999999876543 33344333456
Q ss_pred HHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHH
Q 023156 213 VKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 281 (286)
Q Consensus 213 ~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~ 281 (286)
+++++++++++|+|+++++. ++.+++-+......+.+ .++. ..+++++++++++
T Consensus 283 ~~~i~~l~~~lglp~~l~e~gi~~~~~~~~~~~a~~~~------------~~~p---~~~t~~~i~~i~~ 337 (337)
T cd08177 283 ADALADLARSLGAPTSLADLGVPRDDIDRAAELALADP------------YANP---RPLERDAVRALLE 337 (337)
T ss_pred HHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHhcc------------ccCC---CCCCHHHHHHHhC
Confidence 89999999999999999876 67776544333322211 1112 4678999988864
No 28
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=99.98 E-value=8e-31 Score=246.50 Aligned_cols=250 Identities=15% Similarity=0.153 Sum_probs=166.7
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh----------------hcCCcEEEeccchhhccccCcCcc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGK 65 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~----------------~~gip~i~VPTTl~~~~das~g~k 65 (286)
++|.++++.++++++| +||||||||++|+||++|..+ .+++|+++||||+++ +|.++..
T Consensus 70 ~~v~~~~~~~~~~~~D---~IIaiGGGs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagt--gSe~t~~ 144 (376)
T cd08193 70 AVVEAAVEAARAAGAD---GVIGFGGGSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGT--GSEVTPI 144 (376)
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcc--hHhhCCe
Confidence 6789999999999887 999999999999999999865 368999999999876 4556555
Q ss_pred eeeecCCccccccc---ccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHH
Q 023156 66 TGINHRLGKNLIGA---FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAI 142 (286)
Q Consensus 66 ~~i~~~~~k~~~g~---~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i 142 (286)
..++... +.+.+. ...|.++|+||+++.++|++++++|.+|++.|++ |.|+..... ..+ ++.+....
T Consensus 145 avi~~~~-~~K~~~~~~~~~P~~ai~Dp~l~~~lP~~~~~~~~~Dal~h~~---E~y~s~~~~--~p~----td~~a~~a 214 (376)
T cd08193 145 AIVTTPE-TLKVGVVSPHLLPDLAILDPELTLGLPPHITAATGIDAMVHAI---EAYTSRKKA--NPL----SDLLALEA 214 (376)
T ss_pred EEEEcCC-CceEEeeCccccCCEEEEChHHHcCCCHHHHHHHhHHHHHHHH---HHHHcCCCC--CHH----HHHHHHHH
Confidence 5555544 333332 3569999999999999999999999999999998 554432101 011 22222222
Q ss_pred HHHHHhhhhhhccChhhhhhHH------------hhccc----hhHHHHhHhccCCCCCChHHHHHHHHHHHHH------
Q 023156 143 KRSCENKAEVVSLDEKESGLRA------------TLNLG----HTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------ 200 (286)
Q Consensus 143 ~~~~~~~~~~v~~d~~~~g~r~------------~l~~G----Ht~~Hale~~~~~~~~~HG~aVaig~~~~~~------ 200 (286)
.+.+....+....|+.+...|. +.|.| |.++|++... ++++||.++|+.+|..++
T Consensus 215 i~~i~~~l~~a~~~~~~~~ar~~~~~As~laG~a~~~~g~g~~Hal~h~l~~~---~~i~HG~~~ai~lp~v~~~~~~~~ 291 (376)
T cd08193 215 LRLLGANIPRAVKDGDDLEAREAMLLGAMYAGQAFANAPVAAVHALAYPLGGK---FHIPHGLSNALVLPHVLRFNAPAA 291 (376)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhhcC---cCCChHHHHHHHHHHHHHHhhhhh
Confidence 2222223333445555544442 23334 6666666553 379999999999997664
Q ss_pred ------HHHHcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcc
Q 023156 201 ------MSYRLGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGN 264 (286)
Q Consensus 201 ------l~~~~g~~----~-----~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~ 264 (286)
+++.+|.. + ++.++++++|++++|+|+++.+. ++.+++ +.+...... ++. . +. +.
T Consensus 292 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~lglp~~L~e~gi~~~~~-~~~a~~a~~-~~~-~--~~----~n 362 (376)
T cd08193 292 EERYAELADALGPDLAGASDEEAAEALIDAMEALVADLGIPQRLREVGVTEDDL-PMLAEDAMK-QTR-L--LV----NN 362 (376)
T ss_pred HHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH-HHHHHHHHh-ccc-c--CC----CC
Confidence 23334432 1 23578999999999999999875 666664 444432211 111 0 01 11
Q ss_pred eEEcCCCCHHHHHHHHH
Q 023156 265 CVFTGDYDRKALDDTLY 281 (286)
Q Consensus 265 ~~~~~~v~~~~~~~~~~ 281 (286)
. ..+++++++++++
T Consensus 363 P---~~~t~~~v~~i~~ 376 (376)
T cd08193 363 P---RELTEEDALAIYR 376 (376)
T ss_pred C---CCCCHHHHHHHhC
Confidence 2 4678999988763
No 29
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=99.97 E-value=5.9e-31 Score=246.58 Aligned_cols=253 Identities=19% Similarity=0.176 Sum_probs=166.4
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGAFY 81 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~~~ 81 (286)
++++++++.++++++| +||||||||++|+||++| +++++|+++||||.++ ||.+++++.++.+..++..+.++
T Consensus 71 ~~v~~~~~~~~~~~~d---~IIavGGGsv~D~aK~iA--~~~~~p~i~IPTtagt--gSe~t~~avi~~~~~~~k~~~~~ 143 (366)
T PRK09423 71 NEIDRLVAIAEENGCD---VVIGIGGGKTLDTAKAVA--DYLGVPVVIVPTIAST--DAPTSALSVIYTEEGEFERYLFL 143 (366)
T ss_pred HHHHHHHHHHHhcCCC---EEEEecChHHHHHHHHHH--HHcCCCEEEeCCcccc--CccccCceEEECCCCceeeeccc
Confidence 5789999999999876 999999999999999996 5689999999999655 78899988888877666555543
Q ss_pred --CcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCC----HHHHHHHHHHHHHhhhhhh--
Q 023156 82 --QPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARD----PRAFAYAIKRSCENKAEVV-- 153 (286)
Q Consensus 82 --~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~----~~~l~~~i~~~~~~~~~~v-- 153 (286)
.|+.+|+||+++.|+|++++++|++|++.|++ |.|+....... ...... .+.+.+...+.+....+..
T Consensus 144 ~~~P~~~i~Dp~l~~tlP~~~~~~g~~Dal~ha~---E~y~s~~~~~~-~~~~~~~~~~a~~~a~~~~~~l~~~~~~a~~ 219 (366)
T PRK09423 144 PKNPDLVLVDTAIIAKAPARFLAAGIGDALATWF---EARACSRSGGT-TMAGGKPTLAALALAELCYETLLEDGLKAKL 219 (366)
T ss_pred cCCCCEEEEchHHHHhCCHHHHHHhHHHHHHHHH---HHHHHHhcccc-ccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999998 55554321110 000000 1112222222221111111
Q ss_pred -ccChhhhhhHH-------------hhc----cchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 023156 154 -SLDEKESGLRA-------------TLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKR 215 (286)
Q Consensus 154 -~~d~~~~g~r~-------------~l~----~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~ 215 (286)
.+++.+...|. +.| ..|.++|+|......++++||+++|++.+..+... -...+.+++
T Consensus 220 ~~~~~~~~~ar~~m~~as~~laG~a~~~~g~g~~Hal~h~l~~~~~~~~~~HG~~~a~~~~~~~~~~----~~~~~~i~~ 295 (366)
T PRK09423 220 AVEAKVVTPALENVIEANTLLSGLGFESGGLAAAHAIHNGLTALEDTHHLTHGEKVAFGTLTQLVLE----NRPKEEIEE 295 (366)
T ss_pred HHHcCCCCHHHHHHHHHHHHHhhhhhccCchHHHHHHHHhhhcchhhhhcccccHHHHHHHHHHHhc----CCCHHHHHH
Confidence 11222211111 112 23888888876432237999999998765544321 123567999
Q ss_pred HHHHHHHcCCCCCCCCC-C---CHHHHHHHHHhchhccCCeeEEEeecCCCcc-eEEcCCCCHHHHHHHHHH
Q 023156 216 VHNILQQAKLPTAPPDT-M---TVEMFKSIMAVDKKVADGLLRLILLKGPLGN-CVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 216 i~~~l~~~glp~~l~~~-~---~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~-~~~~~~v~~~~~~~~~~~ 282 (286)
+++|++++|+|+++++. + +.++ ++.+..+- ..+... .+. . ..++++++++++++
T Consensus 296 i~~l~~~lglP~~L~~~gi~~~~~~~-~~~ia~~a-~~~~~~--------~~n~p---~~~t~~~i~~il~~ 354 (366)
T PRK09423 296 VIDFCHAVGLPTTLADLGLKEDSDEE-LRKVAEAA-CAEGET--------IHNMP---FKVTPEDVAAAILA 354 (366)
T ss_pred HHHHHHHCCCCCcHHHcCCCCCCHHH-HHHHHHHH-hCCcch--------hhcCC---CCCCHHHHHHHHHH
Confidence 99999999999998775 3 3444 35554432 221110 111 2 46789999888864
No 30
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=99.97 E-value=2.7e-30 Score=243.30 Aligned_cols=251 Identities=16% Similarity=0.172 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh----------------hcCCcEEEeccchhhccccCcCcc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGK 65 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~----------------~~gip~i~VPTTl~~~~das~g~k 65 (286)
++|+++.+.++++++| +||||||||++|+||.+|..+ ...+|++.||||.++ +|.++..
T Consensus 75 ~~v~~~~~~~~~~~~D---~IiaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagT--GSE~t~~ 149 (383)
T PRK09860 75 ENVAAGLKLLKENNCD---SVISLGGGSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGT--ASEMTRF 149 (383)
T ss_pred HHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcc--hhccCce
Confidence 6789999999999888 999999999999999998642 246899999999877 3555554
Q ss_pred eeeecCCc--ccccc-cccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHH
Q 023156 66 TGINHRLG--KNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAI 142 (286)
Q Consensus 66 ~~i~~~~~--k~~~g-~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i 142 (286)
..+..... |..+. ....|..+|+||+++.++|++++++|..|++.|++ |.|++.... .+ .+.+.+-.
T Consensus 150 avi~~~~~~~K~~~~~~~~~P~~ai~Dp~l~~s~P~~~ta~tg~DAL~Hai---E~y~s~~~~---p~----sd~~a~~a 219 (383)
T PRK09860 150 CIITDEARHIKMAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMDALTHAI---EAYVSIAAT---PI----TDACALKA 219 (383)
T ss_pred EEEEecCCCceEEEECcCcccCEEEECcHhhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCC---HH----HHHHHHHH
Confidence 44544333 33222 23579999999999999999999999999999999 555542211 11 22222222
Q ss_pred HHHHHhhhhhhccChhhhhhHH------------hhc----cchhHHHHhHhccCCCCCChHHHHHHHHHHHHH------
Q 023156 143 KRSCENKAEVVSLDEKESGLRA------------TLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------ 200 (286)
Q Consensus 143 ~~~~~~~~~~v~~d~~~~g~r~------------~l~----~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~------ 200 (286)
.+.+....+.+..|+.+...|. +.| ..|.++|+|... | +++||.++|+-+|..++
T Consensus 220 i~~i~~~l~~a~~~~~d~~aR~~m~~as~laG~a~~~~g~g~~Hal~h~lg~~--~-~ipHG~~~ai~lP~vl~~n~~~~ 296 (383)
T PRK09860 220 VTMIAENLPLAVEDGSNAKAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGF--Y-NLPHGVCNAVLLPHVQVFNSKVA 296 (383)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHccccHHHHHHHhhHHhhC--c-CCCcHHHHHHHHHHHHHHhhccC
Confidence 2233333344445555554443 122 238888888764 4 79999999998886554
Q ss_pred ------HHHHcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcc
Q 023156 201 ------MSYRLGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGN 264 (286)
Q Consensus 201 ------l~~~~g~~----~-----~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~ 264 (286)
+++.+|.. + .+.++++.+|++++|+|+++.+. ++++++ +.+.+.- ..+. .. .++
T Consensus 297 ~~k~~~~a~~~g~~~~~~~~~~~a~~~i~~i~~l~~~lglP~~L~e~gv~~~~~-~~ia~~a-~~~~-------~~-~~n 366 (383)
T PRK09860 297 AARLRDCAAAMGVNVTGKNDAEGAEACINAIRELAKKVDIPAGLRDLNVKEEDF-AVLATNA-LKDA-------CG-FTN 366 (383)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH-HHHHHHH-HhCc-------cc-CCC
Confidence 33345542 1 23578899999999999999875 676665 4444421 1111 11 222
Q ss_pred eEEcCCCCHHHHHHHHHHH
Q 023156 265 CVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 265 ~~~~~~v~~~~~~~~~~~~ 283 (286)
. +.++++++++++++.
T Consensus 367 p---~~~t~~~i~~il~~~ 382 (383)
T PRK09860 367 P---IQATHEEIVAIYRAA 382 (383)
T ss_pred C---CCCCHHHHHHHHHHh
Confidence 3 578899999998764
No 31
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=99.97 E-value=4.5e-30 Score=240.97 Aligned_cols=248 Identities=18% Similarity=0.201 Sum_probs=163.7
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh----------------hcCCcEEEeccchhhccccCcCcc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGK 65 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~----------------~~gip~i~VPTTl~~~~das~g~k 65 (286)
+++.++++.++++++| +||||||||++|+||++|..+ .+++|+|.||||+++ +|.+++.
T Consensus 67 ~~v~~~~~~~~~~~~d---~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~gt--gse~t~~ 141 (370)
T cd08551 67 SNVDAAVAAYREEGCD---GVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTAGT--GSEVTPF 141 (370)
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCCcc--hhhcCCe
Confidence 6789999999999887 999999999999999999876 358999999999877 4666665
Q ss_pred eeeecCC--cccccc-cccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHH
Q 023156 66 TGINHRL--GKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAI 142 (286)
Q Consensus 66 ~~i~~~~--~k~~~g-~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i 142 (286)
..+..+. .|..+. ....|..+|+||+++.++|++++++|++|++.|++ |.|+..... .+ .+.+.+..
T Consensus 142 avi~d~~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~~a~~~Dal~h~~---E~~~s~~~~---~~----s~~~a~~~ 211 (370)
T cd08551 142 AVITDEETGEKYGIASPELLPDVAILDPELTYTLPPALTAATGMDALTHAI---EAYVSRKAN---PI----SDALAIKA 211 (370)
T ss_pred EEEEECCCCeeEEEeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCC---HH----HHHHHHHH
Confidence 5555443 343332 34689999999999999999999999999999988 444432111 11 12222222
Q ss_pred HHHHHhhhhhhccChhhhhhHH------------hhc----cchhHHHHhHhccCCCCCChHHHHHHHHHHHHHH-----
Q 023156 143 KRSCENKAEVVSLDEKESGLRA------------TLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM----- 201 (286)
Q Consensus 143 ~~~~~~~~~~v~~d~~~~g~r~------------~l~----~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l----- 201 (286)
.+.+....+....|+.+...|. +.+ ..|.++|+|+.. + +++||+++|+.++..+++
T Consensus 212 ~~~~~~~l~~~~~~~~~~~ar~~l~~as~laG~a~~~~~~g~~H~i~~~l~~~--~-~i~HG~~~ai~lp~~l~~~~~~~ 288 (370)
T cd08551 212 IRLIAKNLPKAVKEGGDLEAREKMALASTLAGMAFSNAGLGAVHAMAHPLGAL--Y-HIPHGLANAILLPHVMRFNAEAI 288 (370)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHhhHHhhC--C-CCcHHHHHHHHHHHHHHhccccC
Confidence 2222222222233343333322 122 337788877764 3 799999999998876653
Q ss_pred -------HHHcCCC--------CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcce
Q 023156 202 -------SYRLGWI--------DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNC 265 (286)
Q Consensus 202 -------~~~~g~~--------~~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~ 265 (286)
++.++.. ..+.++++.+|++++|+|+++.+. ++.+++-+...+. ..+. .. .+..
T Consensus 289 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lglp~~L~e~gi~~~~~~~ia~~a--~~~~-------~~-~~~p 358 (370)
T cd08551 289 PEKYADIARAMGKVSGGSDDEAANAAIAAIRKLNKELGIPTSLADLGVKEEDIDKLAELA--MEDA-------CL-LNNP 358 (370)
T ss_pred HHHHHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHH--Hhcc-------cC-CCCC
Confidence 2222211 123588999999999999999875 6766653333221 1111 11 1222
Q ss_pred EEcCCCCHHHHHHHH
Q 023156 266 VFTGDYDRKALDDTL 280 (286)
Q Consensus 266 ~~~~~v~~~~~~~~~ 280 (286)
..++++++++++
T Consensus 359 ---~~~~~~~i~~il 370 (370)
T cd08551 359 ---RIITREDIREIY 370 (370)
T ss_pred ---CCCCHHHHHHhC
Confidence 467888888764
No 32
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=99.97 E-value=7.3e-30 Score=239.83 Aligned_cols=248 Identities=18% Similarity=0.166 Sum_probs=163.5
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcC-----------------CcEEEeccchhhccccCcCc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRG-----------------VSFIQIPTTVMAQVDSSVGG 64 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~g-----------------ip~i~VPTTl~~~~das~g~ 64 (286)
+++.++++.+++.++| +||||||||++|+||++|..+.++ +|+++||||+++. |.++.
T Consensus 70 ~~v~~~~~~~~~~~~d---~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTG--sE~t~ 144 (374)
T cd08189 70 ENVEAGLALYRENGCD---AILAVGGGSVIDCAKAIAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTG--SEVTI 144 (374)
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCccHHHHHHHHHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCccc--cccCC
Confidence 6789999999999887 999999999999999999876543 6999999998773 44444
Q ss_pred ceeeecCC--ccccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHH
Q 023156 65 KTGINHRL--GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYA 141 (286)
Q Consensus 65 k~~i~~~~--~k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~ 141 (286)
...+.... .|..+ ..+..|..+|+||+++.|+|++++++|..|++.|++ |.|+..... . ..+.+...
T Consensus 145 ~avi~d~~~~~K~~~~~~~~~P~~~i~Dp~l~~t~P~~~~~a~g~Dal~h~i---E~~~s~~~~---~----~s~~~a~~ 214 (374)
T cd08189 145 AAVISDPETHEKYAISDPRLLPKAAALDPRLTLGLPPHITAATGMDALTHAV---EAYIGRNAT---P----ESDAYALA 214 (374)
T ss_pred eEEEEecCCCeeEEEeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCC---H----HHHHHHHH
Confidence 33343332 24333 235789999999999999999999999999999998 444321111 1 11222222
Q ss_pred HHHHHHhhhhhhccChhhhhhHH------------h----hccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHH----
Q 023156 142 IKRSCENKAEVVSLDEKESGLRA------------T----LNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM---- 201 (286)
Q Consensus 142 i~~~~~~~~~~v~~d~~~~g~r~------------~----l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l---- 201 (286)
..+.+....+.+..|+.+...|. + ++..|.++|+|+.. + +++||.++|+.++..+++
T Consensus 215 a~~~i~~~l~~a~~~~~~~~ar~~l~~as~lag~a~~~~g~g~~Hal~h~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~ 291 (374)
T cd08189 215 AIKLIFENLPKAYEDGSNLEAREAMALASYYAGLAFTRAGVGYVHAIAHQLGGV--Y-GIPHGLANAIVLPHVLEFYGDA 291 (374)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhhcC--C-CCChHHHHHHHHHHHHHHHhhh
Confidence 22222222233334444433332 1 23448888888875 4 799999999998876543
Q ss_pred --------HHHcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhchhccCCeeEEEeecCCCcc
Q 023156 202 --------SYRLGWI----D-----DSIVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGN 264 (286)
Q Consensus 202 --------~~~~g~~----~-----~~~~~~i~~~l~~~glp~~l~~~~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~ 264 (286)
++.+|.- + ++.++++++|++++|+|+++.+ ++.+++ +.+...-. .+.. ... +.
T Consensus 292 ~~~~~~~la~~~g~~~~~~~~~~~~~~~i~~i~~l~~~lglP~~L~~-v~~~~~-~~~a~~a~-~~~~---~~~----~~ 361 (374)
T cd08189 292 AEDRLAELADALGLGDAGESDSDLAAAFIDAVRELNRTLGIPTTLEA-IKASDI-PAIAKRAL-KEAN---PLY----PV 361 (374)
T ss_pred hHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCchh-CCHHHH-HHHHHHHH-hccc---cCC----CC
Confidence 2334541 1 1247889999999999999988 777664 45544221 1110 001 12
Q ss_pred eEEcCCCCHHHHHHHH
Q 023156 265 CVFTGDYDRKALDDTL 280 (286)
Q Consensus 265 ~~~~~~v~~~~~~~~~ 280 (286)
. +.++.+++++++
T Consensus 362 p---~~~~~e~i~~i~ 374 (374)
T cd08189 362 P---KLMDREECEQIL 374 (374)
T ss_pred C---CCCCHHHHHHhC
Confidence 2 467888888763
No 33
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=99.97 E-value=1.3e-30 Score=242.89 Aligned_cols=254 Identities=17% Similarity=0.141 Sum_probs=162.6
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccc--
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGA-- 79 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~-- 79 (286)
+++.++++.++++++| +||||||||++|+||++|. .+++|++.||||.++ +|.+++...+..+..+...+.
T Consensus 64 ~~v~~~~~~~~~~~~D---~IIavGGGS~iD~aK~ia~--~~~~P~iaIPTTagT--gse~t~~avi~~~~~~~k~~~~~ 136 (351)
T cd08170 64 AEIERLAEIARDNGAD---VVIGIGGGKTLDTAKAVAD--YLGAPVVIVPTIAST--DAPTSALSVIYTDDGEFEEYLFL 136 (351)
T ss_pred HHHHHHHHHHhhcCCC---EEEEecCchhhHHHHHHHH--HcCCCEEEeCCcccc--CcccccceEEECCCCceeeeeec
Confidence 5789999999999887 9999999999999999974 479999999999766 566766666655443332222
Q ss_pred ccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHh---hcCCHHHHHHHHHHHHHhhhhhh---
Q 023156 80 FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKL---MARDPRAFAYAIKRSCENKAEVV--- 153 (286)
Q Consensus 80 ~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~---~~~~~~~l~~~i~~~~~~~~~~v--- 153 (286)
...|.++|+||+++.|+|++++++|++|++.|++ |.|+.........+ .....+.+.....+.+....+..
T Consensus 137 ~~~P~~ai~Dp~l~~t~P~~~~a~~~~Dal~h~~---E~~~s~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~a~~~ 213 (351)
T cd08170 137 PRNPDLVLVDTDVIAKAPVRFLVAGIGDALATYF---EARACVRSGGPNMFGGKPTLAALALAKLCYETLLEDGVAALAA 213 (351)
T ss_pred cCCCCEEEEChHHHhhCCHHHHHHHHHHHHHHHH---HHHHHHHccCccccCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2479999999999999999999999999999998 44443322110000 00001222211222111111111
Q ss_pred ccChhhhhhHH-------------hhc----cchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 023156 154 SLDEKESGLRA-------------TLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKRV 216 (286)
Q Consensus 154 ~~d~~~~g~r~-------------~l~----~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i 216 (286)
.+|+.+...|. +.| ..|.++|+++.....++++||++||++.+....+. ....+.++++
T Consensus 214 ~~~~~~~~ar~~~~~a~~~laG~a~~~~g~~~~Hai~h~l~~~~~~~~~~HG~~~a~~~~~~~~~~----~~~~~~~~~i 289 (351)
T cd08170 214 VERGVVTPALERVVEANTLLSGLGFESGGLAAAHAIHNGLTALPETHHALHGEKVAFGTLVQLVLE----NRPAEEIEEV 289 (351)
T ss_pred HHcCCCCHHHHHHHHHHHHHhhhhhccCCcHHHHHHHHhhhcccccccccccchHHHHHHHHHHhc----CCCHHHHHHH
Confidence 11221111111 111 23999999987532137999999998877655431 1235678999
Q ss_pred HHHHHHcCCCCCCCCC-CC---HHHHHHHHHhchhccCCeeEEEeecCCCcc-eEEcCCCCHHHHHHHHHH
Q 023156 217 HNILQQAKLPTAPPDT-MT---VEMFKSIMAVDKKVADGLLRLILLKGPLGN-CVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 217 ~~~l~~~glp~~l~~~-~~---~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~-~~~~~~v~~~~~~~~~~~ 282 (286)
++|++++|+|+++++. ++ .+++ +.+...- .. ++ .. .+. . .+++++++++++++
T Consensus 290 ~~l~~~lglP~~l~~~gi~~~~~~~~-~~~a~~~-~~-~~------~~-~~n~p---~~~t~e~i~~i~~~ 347 (351)
T cd08170 290 IDFCRAVGLPVTLADLGLEDVTEEEL-RKVAEAA-CA-PG------ET-IHNMP---FPVTPEDVYDAILA 347 (351)
T ss_pred HHHHHHCCCCCcHHHcCCCCCCHHHH-HHHHHHH-hC-Ch------hh-hhcCC---CCCCHHHHHHHHHH
Confidence 9999999999998764 33 2443 4444421 11 11 00 122 2 47889999999875
No 34
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=99.97 E-value=1e-29 Score=239.04 Aligned_cols=249 Identities=18% Similarity=0.185 Sum_probs=163.2
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh----------------cCCcEEEeccchhhccccCcCcc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL----------------RGVSFIQIPTTVMAQVDSSVGGK 65 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~----------------~gip~i~VPTTl~~~~das~g~k 65 (286)
+++.++.+.+++.++| +||||||||++|+||++|..+. .++|+|.||||+++. |.++..
T Consensus 72 ~~v~~~~~~~~~~~~d---~IIaiGGGsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTg--SE~t~~ 146 (377)
T cd08188 72 EEVMAGAELYLENGCD---VIIAVGGGSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSG--ADVSQF 146 (377)
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCchHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccc--cccCCe
Confidence 5688899999998877 9999999999999999986431 147999999998763 445444
Q ss_pred eeeecCCc--cccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHH
Q 023156 66 TGINHRLG--KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAI 142 (286)
Q Consensus 66 ~~i~~~~~--k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i 142 (286)
..+..... |..+ +....|..+|+||+++.++|++++++|++|++.|++ |.|+....+. + ++.+....
T Consensus 147 avi~d~~~~~K~~i~~~~~~P~~vi~Dp~l~~~lP~~~~~~~~~Dal~hai---E~~~s~~~~~---~----sd~~a~~a 216 (377)
T cd08188 147 AIITDTERKVKMAIISKSLVPDIALIDPETLTTMPPELTAATGLDALTHAI---EAYVSNASSP---L----TDLHALEA 216 (377)
T ss_pred EEEEeCCCCeeEEEeCccccCCEEEECHHHHcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCH---H----HHHHHHHH
Confidence 44443332 3322 223469999999999999999999999999999999 5554321111 1 12222222
Q ss_pred HHHHHhhhhhhccChhhhhhHH------------hhcc----chhHHHHhHhccCCCCCChHHHHHHHHHHHHHH-----
Q 023156 143 KRSCENKAEVVSLDEKESGLRA------------TLNL----GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM----- 201 (286)
Q Consensus 143 ~~~~~~~~~~v~~d~~~~g~r~------------~l~~----GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l----- 201 (286)
.+.+....+.+.+|+.+...|. +.|. .|.++|++... + +++||+++|+-+|..+++
T Consensus 217 ~~~i~~~L~~~~~~~~~~~ar~~l~~As~laG~a~~~~~~g~~Hal~~~l~~~--~-~i~HG~~~ai~lp~vl~~~~~~~ 293 (377)
T cd08188 217 IRLIAANLPPAIANPTDLEARESMMLASLQAGLAFSNAILGAVHAMAHSLGGL--L-DLPHGECNAILLPHVMEFNYPAA 293 (377)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHHhhhhhhC--c-CCChHHHHHHHHHHHHHhhhhcC
Confidence 2222222333445555544442 1232 37777776653 4 799999999999876543
Q ss_pred -------HHHcCCCC---------HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcc
Q 023156 202 -------SYRLGWID---------DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGN 264 (286)
Q Consensus 202 -------~~~~g~~~---------~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~ 264 (286)
++.+|... .+.++++++|++++|+|+++.+. ++++++ +.+.... ..+..+ . +.
T Consensus 294 ~~~~~~la~~~g~~~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~-~~ia~~a-~~~~~~----~----~~ 363 (377)
T cd08188 294 PERYARIAEALGLDVRGLTTEEAALAVIEAVRRLRAALGVPETLGDLGVKREDI-PLLARNA-LKDACM----V----TN 363 (377)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH-HHHHHHH-HhCccc----C----CC
Confidence 33345421 23478999999999999999886 676664 4454422 221111 1 11
Q ss_pred eEEcCCCCHHHHHHHHH
Q 023156 265 CVFTGDYDRKALDDTLY 281 (286)
Q Consensus 265 ~~~~~~v~~~~~~~~~~ 281 (286)
. ..+++++++++++
T Consensus 364 p---~~~~~~~i~~il~ 377 (377)
T cd08188 364 P---RDATVEDIEAIYE 377 (377)
T ss_pred C---CCCCHHHHHHHhC
Confidence 2 4678999988864
No 35
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=99.97 E-value=2.2e-30 Score=241.26 Aligned_cols=254 Identities=19% Similarity=0.199 Sum_probs=158.5
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCccccccc--
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGKNLIGA-- 79 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k~~~g~-- 79 (286)
+++.++++.++++++| +||||||||++|+||++| +.+++|+++||||+++ +|.++....+..+.+ +....
T Consensus 64 ~~v~~~~~~~~~~~~d---~IIavGGGs~~D~aK~ia--~~~~~p~i~VPTtagt--gse~t~~avi~~~~~-~~k~~~~ 135 (349)
T cd08550 64 EEVVKALCGAEEQEAD---VIIGVGGGKTLDTAKAVA--DRLDKPIVIVPTIAST--CAASSNLSVIYSDDG-EFARYDF 135 (349)
T ss_pred HHHHHHHHHHHhcCCC---EEEEecCcHHHHHHHHHH--HHcCCCEEEeCCcccc--CccccceEEEEcCCC-ceeeeee
Confidence 5788999999999777 999999999999999996 5679999999999776 455655444443332 22222
Q ss_pred -ccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHh-HHHhhcCCHHHHHHHHHHHHHhhhhhhccCh
Q 023156 80 -FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQN-MHKLMARDPRAFAYAIKRSCENKAEVVSLDE 157 (286)
Q Consensus 80 -~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~ 157 (286)
...|.++|+||+++.|+|++++++|++|++.|++ |.|+...... .....+.......+.+.+.+....+....|+
T Consensus 136 ~~~~P~~~i~Dp~l~~t~P~~~~a~g~~Dal~h~~---E~~~s~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~a~~~~ 212 (349)
T cd08550 136 QKRNPDLVLVDTEVIAQSPAEYLWSGIADALAKWY---EAEAVIRGREMNGSLAPLMALAVAEACTPTLLEYGVLAVESM 212 (349)
T ss_pred cCCCCCEEEEChHHHHhCCHHHHHHhHHHHHHHHH---HHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2479999999999999999999999999999988 4444321110 0000000011222233333322111111111
Q ss_pred ---hhhh-----hHH--------h--------hccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHH
Q 023156 158 ---KESG-----LRA--------T--------LNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIV 213 (286)
Q Consensus 158 ---~~~g-----~r~--------~--------l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~ 213 (286)
.+.. .+. . ++..|.++|+++...+.++++||++||++++.++.+. + ...+.+
T Consensus 213 ~~~~~~~a~~~~~~a~~~~ag~~~~~~~~~~~~~~~Hai~~~l~~~~~~~~~~HG~~~a~~~~~~~~~~---~-~~~~~~ 288 (349)
T cd08550 213 EAKRVTQAFEEVVEANIMLAGTVFESGVDYYRLAAAHAVHNGLTALEETHKVLHGEKVAYGVLVQLALE---E-DPREEI 288 (349)
T ss_pred HcCCCCHHHHHHHHHHHHHhhhhcccCccCCccHHHHHHHHhhhccccccccccccHHHHHHHHHHHHc---C-CCHHHH
Confidence 0000 111 0 1122666666665322247999999999988765541 1 134679
Q ss_pred HHHHHHHHHcCCCCCCCCC-C--CHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHH
Q 023156 214 KRVHNILQQAKLPTAPPDT-M--TVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 214 ~~i~~~l~~~glp~~l~~~-~--~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~ 282 (286)
+++++|++++|+|+++.+. + +.+++ +.+... ...+... ...+ . ..++++++.+++.+
T Consensus 289 ~~~~~l~~~lglP~~L~~~gi~~~~~~i-~~ia~~-a~~~~~~----~~~~---p---~~~t~~~i~~~~~~ 348 (349)
T cd08550 289 EELVEFYRQLGLPVTLADLGLEFSDEDI-KKVASK-APATTET----IHNP---F---GDVTEEDVAQAIIA 348 (349)
T ss_pred HHHHHHHHHCCCCCcHHHcCCCCCHHHH-HHHHHH-HcCCcch----hhcC---C---CCCCHHHHHHHHHh
Confidence 9999999999999999875 6 66665 433332 1111110 0110 1 46789999998754
No 36
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=99.97 E-value=1e-29 Score=239.14 Aligned_cols=249 Identities=15% Similarity=0.137 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHH----------------hhcCCcEEEeccchhhccccCcCcc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS----------------YLRGVSFIQIPTTVMAQVDSSVGGK 65 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~----------------~~~gip~i~VPTTl~~~~das~g~k 65 (286)
++|+++.+.++++++| +||||||||++|+||++|.. ...++|++.||||.++ +|.++..
T Consensus 72 ~~v~~~~~~~~~~~~D---~IIavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagT--gSe~t~~ 146 (377)
T cd08176 72 TNVKDGLAVFKKEGCD---FIISIGGGSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGT--ASEVTIN 146 (377)
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCcHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcc--hhccCCc
Confidence 6789999999999887 99999999999999999864 2357999999999876 3555554
Q ss_pred eeeecCCcccccc---cccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHH
Q 023156 66 TGINHRLGKNLIG---AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAI 142 (286)
Q Consensus 66 ~~i~~~~~k~~~g---~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i 142 (286)
..+..+..+...+ ....|..+|+||+++.++|++++++|.+|++.|++ |.|+...... + .+.+.+..
T Consensus 147 avi~~~~~~~K~~~~~~~~~P~~~ivDp~l~~~~P~~~~a~~~~Dal~h~~---E~~~s~~~~~---~----s~~~a~~a 216 (377)
T cd08176 147 YVITDEERKVKMVIVDPNDIPIVAVNDPELMVGMPPGLTAATGMDALTHAI---EAYVSTGANP---I----TDACALKA 216 (377)
T ss_pred EEEEEcCCCceeEEeCccccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCH---H----HHHHHHHH
Confidence 4455444333333 33579999999999999999999999999999988 4444321111 1 12222222
Q ss_pred HHHHHhhhhhhccChhhhhhHH------------hhc----cchhHHHHhHhccCCCCCChHHHHHHHHHHHHHH-----
Q 023156 143 KRSCENKAEVVSLDEKESGLRA------------TLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM----- 201 (286)
Q Consensus 143 ~~~~~~~~~~v~~d~~~~g~r~------------~l~----~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l----- 201 (286)
.+.+....+....|+.+...|. +.| ..|.++|+|+.. + +++||.++|+.++...++
T Consensus 217 ~~~i~~~l~~~~~~~~~~~ar~~l~~as~laG~a~~~~g~g~~Hal~h~l~~~--~-~i~HG~~~ai~lp~vl~~~~~~~ 293 (377)
T cd08176 217 IELIAKNLRRAVANGKDLEAREGMAYAQYLAGMAFNNAGLGYVHSMAHQLGGF--Y-DLPHGVCNAILLPHVMEYNAPAC 293 (377)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhHhhc--C-CCChHHHHHHHHHHHHHHhhhcC
Confidence 2222222222333443333321 222 338888888764 3 799999999999876543
Q ss_pred -------HHHcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcc
Q 023156 202 -------SYRLGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGN 264 (286)
Q Consensus 202 -------~~~~g~~----~-----~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~ 264 (286)
++.+|.. + .+.++++++|++++|+|+++++. ++++++ +.+..+-. .+.. . .+.
T Consensus 294 ~~k~~~~a~~lg~~~~~~~~~~~~~~~~~~i~~l~~~lglP~~L~e~gv~~~~~-~~~a~~a~-~~~~-------~-~~~ 363 (377)
T cd08176 294 PERFADIAEAMGVDTEGLSDEEAAEAAIDAVRALSEDVGIPAGLRELGVKEEDF-ELLAENAL-KDAC-------A-GGN 363 (377)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH-HHHHHHHH-hCcC-------C-CCC
Confidence 2334542 1 13578999999999999999875 676664 55544321 1111 0 122
Q ss_pred eEEcCCCCHHHHHHHHH
Q 023156 265 CVFTGDYDRKALDDTLY 281 (286)
Q Consensus 265 ~~~~~~v~~~~~~~~~~ 281 (286)
. ..+++++++++++
T Consensus 364 p---~~~t~~~i~~il~ 377 (377)
T cd08176 364 P---RKATKEDIIAIYK 377 (377)
T ss_pred C---CCCCHHHHHHHhC
Confidence 2 4678999988863
No 37
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=99.97 E-value=1e-29 Score=239.31 Aligned_cols=253 Identities=18% Similarity=0.141 Sum_probs=166.3
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh---------------------hcCCcEEEeccchhhccc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---------------------LRGVSFIQIPTTVMAQVD 59 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~---------------------~~gip~i~VPTTl~~~~d 59 (286)
++++.++++.++++++| +||||||||++|+||++|..+ .+.+|+++||||+++ +
T Consensus 69 ~~~v~~~~~~~~~~~~D---~IiavGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagT--G 143 (380)
T cd08185 69 TTTVMEGAALAREEGCD---FVVGLGGGSSMDTAKAIAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGT--G 143 (380)
T ss_pred HHHHHHHHHHHHHcCCC---EEEEeCCccHHHHHHHHHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChh--h
Confidence 36789999999999887 999999999999999998753 136899999999876 4
Q ss_pred cCcCcceeeecCCccccccc---ccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHH
Q 023156 60 SSVGGKTGINHRLGKNLIGA---FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPR 136 (286)
Q Consensus 60 as~g~k~~i~~~~~k~~~g~---~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~ 136 (286)
|.+++.+.+..+..+.+.+. ...|..+|+||+++.++|++++++|..|++.|++ |.|++... +...+
T Consensus 144 SE~t~~avi~~~~~~~K~~~~~~~~~P~~ailDp~l~~~~P~~~~aatg~Dal~h~i---Ea~~s~~~-------~~~s~ 213 (380)
T cd08185 144 SEADPWAVITNPETKEKIGLGHPATFPKISIVDPELMLTVPPHLTAYTGFDAFFHAF---EAYIANNA-------NPMSD 213 (380)
T ss_pred hccCCeEEEEcCCCCeeEEecCCCccccEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHcCCC-------ChHHH
Confidence 55666555665543333332 3469999999999999999999999999999998 44443111 11123
Q ss_pred HHHHHHHHHHHhhhhhhccChhhhhhHH------------hhc----cchhHHHHhHhccCCCCCChHHHHHHHHHHHHH
Q 023156 137 AFAYAIKRSCENKAEVVSLDEKESGLRA------------TLN----LGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD 200 (286)
Q Consensus 137 ~l~~~i~~~~~~~~~~v~~d~~~~g~r~------------~l~----~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~ 200 (286)
.+.+...+.+....+.+..|+.+...|. +.| ..|.++|++... +++++||+++|+-++..++
T Consensus 214 ~~a~~a~~li~~~l~~a~~~~~~~~ar~~~~~as~laG~a~~~~g~g~~Hai~~~l~~~--~~~i~HG~~~ai~lp~vl~ 291 (380)
T cd08185 214 MLALEAIELIAKYLPRAVKDGSDLEAREKMAWANTLGGMVEANSGCTSPHALEHALSGL--HPDLPHGAGLAMLSPAYFE 291 (380)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHcCccchhhhHhhChHhcc--CCCCChHHHHHHHhHHHHH
Confidence 3332233333333333444554433332 222 338888887764 3379999999998886543
Q ss_pred HH------------HHc--CCCC----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCC
Q 023156 201 MS------------YRL--GWID----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGP 261 (286)
Q Consensus 201 l~------------~~~--g~~~----~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~ 261 (286)
+. +.. +... .+.++++++|++++|+|+++.+. ++++++-+......+.. .. ..
T Consensus 292 ~~~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~i~~~~~~lglP~~L~e~gv~~~~~~~~a~~a~~~~-~~------~~- 363 (380)
T cd08185 292 FFARKAPEKFAFVARAEAAGLEDEEAAEDFIEALRKLLKRIGLDDLLSDLGVTKEDIPKLADNARETM-GG------LF- 363 (380)
T ss_pred HhhhhCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHHhc-cc------cc-
Confidence 21 111 1111 23488899999999999999875 77777644433322211 00 00
Q ss_pred CcceEEcCCCCHHHHHHHHH
Q 023156 262 LGNCVFTGDYDRKALDDTLY 281 (286)
Q Consensus 262 iG~~~~~~~v~~~~~~~~~~ 281 (286)
.++. ..++.++++++++
T Consensus 364 ~~nP---~~~t~~~~~~i~~ 380 (380)
T cd08185 364 EADP---AELTREDIEEIYE 380 (380)
T ss_pred CCCC---CcCCHHHHHHHhC
Confidence 1223 4678999988763
No 38
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=99.97 E-value=9.7e-30 Score=238.72 Aligned_cols=249 Identities=16% Similarity=0.107 Sum_probs=162.5
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh--------------------cCCcEEEeccchhhccccC
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL--------------------RGVSFIQIPTTVMAQVDSS 61 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~--------------------~gip~i~VPTTl~~~~das 61 (286)
+++.++.+.+++.++| +||||||||++|+||++|..+. ..+|+|+||||+++ +|.
T Consensus 68 ~~v~~~~~~~~~~~~d---~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagt--gse 142 (370)
T cd08192 68 AAVEAGLAAYRAGGCD---GVIAFGGGSALDLAKAVALMAGHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAGT--GSE 142 (370)
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCCHHHHhcccccccccCCCCCCEEEecCCCch--hhh
Confidence 5788999999999887 9999999999999999987642 24899999999877 344
Q ss_pred cCcceeeecC--Ccccccc-cccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHH
Q 023156 62 VGGKTGINHR--LGKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAF 138 (286)
Q Consensus 62 ~g~k~~i~~~--~~k~~~g-~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l 138 (286)
++....+..+ +.|..+. ....|.++|+||+++.++|++++++|++|++.|++ |.|+....+. .++.+
T Consensus 143 ~t~~avi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~~~Dal~h~~---E~~~s~~~~~-------~s~~~ 212 (370)
T cd08192 143 VGRAAVITDEDTGRKLIIFSPHLLPKAAICDPELTLGLPAGLTAATGMDALTHCI---EAYLSPGFNP-------MADGI 212 (370)
T ss_pred hCCceEEEeCCCCeeEEeeCCcccCCEEEEChhhhhCCCHHHHHHHHHHHHHHHH---HHHhcCCCCH-------HHHHH
Confidence 4443334433 3344332 34679999999999999999999999999999998 4443311111 11222
Q ss_pred HHHHHHHHHhhhhhhccChhhhhhHH------------h---hccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHH-
Q 023156 139 AYAIKRSCENKAEVVSLDEKESGLRA------------T---LNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMS- 202 (286)
Q Consensus 139 ~~~i~~~~~~~~~~v~~d~~~~g~r~------------~---l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~- 202 (286)
.....+.+....+.+.+|+.+...|. + ++..|.++|+|+.. | +++||.++|+.++..+++.
T Consensus 213 a~~a~~~~~~~l~~~~~~~~~~~ar~~~~~as~laG~a~~~~~g~~Hal~h~l~~~--~-~i~HG~~~ai~lp~v~~~~~ 289 (370)
T cd08192 213 ALEGLRLISRHLERAVRDGGDLEARGGMMMAASMGAMAFQKGLGAVHSLSHPLGAL--Y-NLHHGLLNAVLLPYVLRFNR 289 (370)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhhccHHHHHhhhHHhhC--C-CCChHHHHHHHHHHHHHHhh
Confidence 11111222222222223333332221 1 12348888888875 4 7999999999998766532
Q ss_pred -----------HHcCCCC---HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEE
Q 023156 203 -----------YRLGWID---DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVF 267 (286)
Q Consensus 203 -----------~~~g~~~---~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~ 267 (286)
+.++... ++.++++++|++++|+|+++.+. ++.+++-+.....-+ +... .+..
T Consensus 290 ~~~~~k~~~~a~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~~~~a~~a~~--~~~~--------~~np-- 357 (370)
T cd08192 290 PAIEEKIARLARALAMGLGGFADFADAILALNARLGIPHTLRELGVDEDDLDRIAEKALA--DPSH--------ATNP-- 357 (370)
T ss_pred hcCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHHHHHHHHh--Cccc--------CCCC--
Confidence 2223221 24578999999999999999875 777765333322211 1110 1222
Q ss_pred cCCCCHHHHHHHHH
Q 023156 268 TGDYDRKALDDTLY 281 (286)
Q Consensus 268 ~~~v~~~~~~~~~~ 281 (286)
..+++++++++++
T Consensus 358 -~~~~~~~i~~i~~ 370 (370)
T cd08192 358 -RPATAEDYRALLE 370 (370)
T ss_pred -CCCCHHHHHHHhC
Confidence 4788999988863
No 39
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=99.97 E-value=9.5e-30 Score=239.12 Aligned_cols=251 Identities=16% Similarity=0.153 Sum_probs=166.0
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh-------------------hcCCcEEEeccchhhccccCc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-------------------LRGVSFIQIPTTVMAQVDSSV 62 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~-------------------~~gip~i~VPTTl~~~~das~ 62 (286)
+++.++++.++++++| +||||||||++|+||++|..+ ...+|+++||||.++ +|.+
T Consensus 68 ~~v~~~~~~~~~~~~D---~IIavGGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagT--GSE~ 142 (375)
T cd08179 68 ETVLKGAEAMREFEPD---WIIALGGGSPIDAAKAMWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGT--ATEV 142 (375)
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCccHHHHHHHHHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCch--hHhh
Confidence 6789999999999987 999999999999999998632 235799999999877 3555
Q ss_pred CcceeeecCCc--cccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHH
Q 023156 63 GGKTGINHRLG--KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFA 139 (286)
Q Consensus 63 g~k~~i~~~~~--k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~ 139 (286)
+....+..+.. |..+ .....|.++|+||+++.++|++++++|..|++.|++ |.|+..... .+ .+.+.
T Consensus 143 t~~avi~~~~~~~K~~~~~~~~~P~~ai~Dp~l~~~~P~~~~a~tg~Dal~ha~---E~y~s~~~~---~~----s~~~a 212 (375)
T cd08179 143 TAFSVITDYEKGIKYPLADFEITPDVAIVDPELTETMPPKLTAETGMDALTHAI---EAYVSTAAN---DF----TDPLA 212 (375)
T ss_pred CCeEEEEeCCCCeEEEecCCcccCCEEEEChhhhcCCCHHHHHHHHHHHHHHHH---HHHHhcCCC---HH----HHHHH
Confidence 54444444332 3322 235689999999999999999999999999999998 554432111 11 22222
Q ss_pred HHHHHHHHhhhhhhccChhhhhhHH------------hhcc----chhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHH
Q 023156 140 YAIKRSCENKAEVVSLDEKESGLRA------------TLNL----GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSY 203 (286)
Q Consensus 140 ~~i~~~~~~~~~~v~~d~~~~g~r~------------~l~~----GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~ 203 (286)
+...+.+....+.+..|+ +...|. +.+. .|.++|++... + +++||.++|+.++...++..
T Consensus 213 ~~ai~~i~~~l~~a~~~~-d~~ar~~l~~as~laG~a~~~~g~g~~Hai~h~lg~~--~-~i~HG~~~ai~lp~v~~~~~ 288 (375)
T cd08179 213 LHAIEMIFENLPKSYEGD-DKEAREKMHNAQCMAGMAFSNALLGIVHSMAHKTGAE--F-GVPHGLANAIYLPYVIQFNS 288 (375)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhccC--C-CCChHHHHHHHHHHHHHHhc
Confidence 222222322233333445 433332 2222 38888888764 4 79999999999997665432
Q ss_pred HcC------------CCCHHHHHHHHHHHHHcCCCCCCCCC-CCHHHH---HHHHHhchhccCCeeEEEeecCCCcceEE
Q 023156 204 RLG------------WIDDSIVKRVHNILQQAKLPTAPPDT-MTVEMF---KSIMAVDKKVADGLLRLILLKGPLGNCVF 267 (286)
Q Consensus 204 ~~g------------~~~~~~~~~i~~~l~~~glp~~l~~~-~~~~~~---~~~l~~dkk~~~~~~~~~l~~~~iG~~~~ 267 (286)
... ....+.++++++|++++|+|+++.+. ++.+++ ++.+...-. .+... .+..
T Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~~lglp~~L~~~gi~~~~~~~~~~~~a~~a~-~~~~~--------~~~p-- 357 (375)
T cd08179 289 KDAEAKKRYAGLAKEEGVEDLIEAVRELNKKLGIPACFKEYGIDEQEFLEKLDELAENAI-KDACT--------GTNP-- 357 (375)
T ss_pred ccCccHHHHHHHHHHhhHHHHHHHHHHHHHHCCCCCCHHHcCCCHHHHHhhHHHHHHHHH-hCcCC--------CCCC--
Confidence 110 00134588999999999999999875 666543 344444221 11110 1222
Q ss_pred cCCCCHHHHHHHHHHH
Q 023156 268 TGDYDRKALDDTLYAF 283 (286)
Q Consensus 268 ~~~v~~~~~~~~~~~~ 283 (286)
..++++++++++++.
T Consensus 358 -~~~t~~~i~~il~~~ 372 (375)
T cd08179 358 -RQPTKEEMKKLLKCV 372 (375)
T ss_pred -CCCCHHHHHHHHHHH
Confidence 578999999999865
No 40
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=99.97 E-value=1.3e-29 Score=238.57 Aligned_cols=249 Identities=18% Similarity=0.194 Sum_probs=164.7
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh------------------hcCCcEEEeccchhhccccCc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY------------------LRGVSFIQIPTTVMAQVDSSV 62 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~------------------~~gip~i~VPTTl~~~~das~ 62 (286)
+++|+++++.++++++| +||||||||++|+||++|..+ .+++|+++||||.++. |.+
T Consensus 72 ~~~v~~~~~~~~~~~~D---~IiaiGGGSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTG--se~ 146 (379)
T TIGR02638 72 ITVVKAGVAAFKASGAD---YLIAIGGGSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTA--AEV 146 (379)
T ss_pred HHHHHHHHHHHHhcCCC---EEEEeCChHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchh--hhh
Confidence 36789999999999987 999999999999999998632 3579999999997763 444
Q ss_pred CcceeeecCCccccc---ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHH
Q 023156 63 GGKTGINHRLGKNLI---GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFA 139 (286)
Q Consensus 63 g~k~~i~~~~~k~~~---g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~ 139 (286)
+....+..+..+... +.+..|..+|+||+++.++|++++++|+.|++.|++ |.|+...... + .+.+.
T Consensus 147 t~~avi~~~~~~~K~~~~~~~~~P~~ai~Dp~l~~~lP~~~~a~t~~Dal~H~i---Ea~~s~~~~~---~----sd~~a 216 (379)
T TIGR02638 147 TINYVITDEENKRKFVCVDPHDIPDVAVIDAEMMYSMPKSLTAATGMDALTHAI---EGYITKGAWE---L----TDMLH 216 (379)
T ss_pred CCEEEEEECCCCeeEEEeCCCccccEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHHhcCCCH---H----HHHHH
Confidence 443444444333222 345689999999999999999999999999999998 5554321111 1 12222
Q ss_pred HHHHHHHHhhhhhhccChhhhhhHH------------hhccc----hhHHHHhHhccCCCCCChHHHHHHHHHHHHH---
Q 023156 140 YAIKRSCENKAEVVSLDEKESGLRA------------TLNLG----HTFGHAIETGFGYGQWLHGEAVAAGMVMAVD--- 200 (286)
Q Consensus 140 ~~i~~~~~~~~~~v~~d~~~~g~r~------------~l~~G----Ht~~Hale~~~~~~~~~HG~aVaig~~~~~~--- 200 (286)
.-..+.+....+...+|+.+...|. +.|.| |.++|++... + +++||.++|+-++..++
T Consensus 217 ~~a~~li~~~l~~~~~~~~~~~aR~~l~~As~laG~a~~~~g~g~~Hal~~~l~~~--~-~i~HG~a~ai~lp~vl~~~~ 293 (379)
T TIGR02638 217 LKAIEIIARWLRSAVEGGKDLEAREQMALGQYVAGMGFSNVGLGLVHGMAHPLGAF--Y-NTPHGVANAILLPHVMEFNA 293 (379)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhhcC--c-CCChHHHHHHHHHHHHHHHH
Confidence 2222222222333445555544442 22223 7777777764 4 79999999998886543
Q ss_pred ---------HHHHcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCC
Q 023156 201 ---------MSYRLGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGP 261 (286)
Q Consensus 201 ---------l~~~~g~~----~-----~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~ 261 (286)
+++.+|.. + ++.++++.+|++++|+|+++.+. ++++++ +.+..+-. .+.. .
T Consensus 294 ~~~~~~~~~la~~~g~~~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~-~~~a~~a~-~~~~-------~- 363 (379)
T TIGR02638 294 EFTGEKYREIAKAMGVKTEGMSDEEARDAAVEAVKTLSKRVGIPEGLSELGVKEEDI-PALAEAAL-ADVC-------T- 363 (379)
T ss_pred HhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHcCCCHHHH-HHHHHHHH-hCcC-------c-
Confidence 33334432 1 13478899999999999999875 666664 44444221 1111 0
Q ss_pred CcceEEcCCCCHHHHHHHH
Q 023156 262 LGNCVFTGDYDRKALDDTL 280 (286)
Q Consensus 262 iG~~~~~~~v~~~~~~~~~ 280 (286)
.++. ..++++++++++
T Consensus 364 ~~nP---~~~~~~~i~~i~ 379 (379)
T TIGR02638 364 GGNP---RETTVEEIEELY 379 (379)
T ss_pred CCCC---CCCCHHHHHHhC
Confidence 1222 567888888764
No 41
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=99.97 E-value=2.2e-29 Score=237.16 Aligned_cols=251 Identities=18% Similarity=0.207 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh------------------hcCCcEEEeccchhhccccCcC
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY------------------LRGVSFIQIPTTVMAQVDSSVG 63 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~------------------~~gip~i~VPTTl~~~~das~g 63 (286)
+++.++++.++++++| +||||||||++|+||++|..+ .+++|++.||||+++ +|-++
T Consensus 74 ~~v~~~~~~~~~~~~D---~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagT--Gse~t 148 (382)
T PRK10624 74 EVVKEGVEVFKASGAD---YLIAIGGGSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGT--AAEVT 148 (382)
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCChHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCch--hhhhc
Confidence 6789999999999887 999999999999999998532 357999999999765 23343
Q ss_pred cceeeecCCccc--cc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHH
Q 023156 64 GKTGINHRLGKN--LI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAY 140 (286)
Q Consensus 64 ~k~~i~~~~~k~--~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~ 140 (286)
....+..+..+. .+ +.+..|+.+|+||+++.|+|++++++|..|++.|++ |.|++......++.+ .....+
T Consensus 149 ~~avi~~~~~~~k~~~~~~~~~P~~ailDp~l~~tlP~~~~a~~g~Dal~Hai---E~y~s~~~~p~sd~~---a~~ai~ 222 (382)
T PRK10624 149 INYVITDEEKRRKFVCVDPHDIPQVAFVDADMMDSMPPGLKAATGVDALTHAI---EGYITRGAWALTDML---HLKAIE 222 (382)
T ss_pred ceeeeecCCCCeeEEeeCccccCCEEEEChHhhcCCCHHHHHHHHHhHHHHHH---HHHHcCCCCHHHHHH---HHHHHH
Confidence 333344333222 22 456789999999999999999999999999999998 555432111111111 111112
Q ss_pred HHHHHHHhhhhhhccChhhhhhH----------Hhhccc----hhHHHHhHhccCCCCCChHHHHHHHHHHHHH------
Q 023156 141 AIKRSCENKAEVVSLDEKESGLR----------ATLNLG----HTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------ 200 (286)
Q Consensus 141 ~i~~~~~~~~~~v~~d~~~~g~r----------~~l~~G----Ht~~Hale~~~~~~~~~HG~aVaig~~~~~~------ 200 (286)
.+.+.+ +.+..|+.+.-.+ .+.|.| |.++|++... | +++||.++|+-+|...+
T Consensus 223 ~i~~~l----~~~~~~~~~aR~~~~~as~laG~a~~~~g~g~~Hal~h~l~~~--~-~ipHG~~~ai~lp~vl~~~~~~~ 295 (382)
T PRK10624 223 IIAGAL----RGAVAGDKEAGEGMALGQYIAGMGFSNVGLGLVHGMAHPLGAF--Y-NTPHGVANAILLPHVMEYNADFT 295 (382)
T ss_pred HHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHhccchHHHHHhhhHHhhC--C-CCChHHHHHHHHHHHHHHhhhhh
Confidence 222222 2222222221111 123334 7777777764 4 79999999998886543
Q ss_pred ------HHHHcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcc
Q 023156 201 ------MSYRLGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGN 264 (286)
Q Consensus 201 ------l~~~~g~~----~-----~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~ 264 (286)
+++.+|.. + .+.++++++|++++|+|+++++. ++++++ +.+...-.. +.. . .++
T Consensus 296 ~~k~~~la~~~g~~~~~~~~~~~~~~~~~~i~~l~~~lglp~~L~e~gv~~~~~-~~~a~~a~~-~~~-------~-~~n 365 (382)
T PRK10624 296 GEKYRDIARAMGVKVEGMSLEEARNAAVEAVKALNRDVGIPPHLRDVGVKEEDI-PALAQAAFD-DVC-------T-GGN 365 (382)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH-HHHHHHHHh-CcC-------C-CCC
Confidence 23334542 1 23478999999999999999875 676664 444432211 111 0 122
Q ss_pred eEEcCCCCHHHHHHHHHHH
Q 023156 265 CVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 265 ~~~~~~v~~~~~~~~~~~~ 283 (286)
. ..++++++++++++.
T Consensus 366 P---~~~t~~~i~~i~~~~ 381 (382)
T PRK10624 366 P---REATLEDIVELYKKA 381 (382)
T ss_pred C---CCCCHHHHHHHHHHh
Confidence 2 578999999999763
No 42
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=99.97 E-value=1.3e-29 Score=239.36 Aligned_cols=250 Identities=17% Similarity=0.148 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh----------------cCCcEEEeccchhhccccCcCcc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL----------------RGVSFIQIPTTVMAQVDSSVGGK 65 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~----------------~gip~i~VPTTl~~~~das~g~k 65 (286)
++|+++++.++++++| +||||||||++|+||++|..+. ..+|+++||||.++. |.++..
T Consensus 93 ~~v~~~~~~~r~~~~D---~IiavGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaGTG--SE~t~~ 167 (395)
T PRK15454 93 TDVCAAVAQLRESGCD---GVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTG--SETTNV 167 (395)
T ss_pred HHHHHHHHHHHhcCcC---EEEEeCChHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCCCcch--hhhCCe
Confidence 5789999999999988 9999999999999999987532 357999999997763 444443
Q ss_pred eeeecCC--ccccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHH
Q 023156 66 TGINHRL--GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAI 142 (286)
Q Consensus 66 ~~i~~~~--~k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i 142 (286)
..+..+. .|..+ +....|.++|+||+++.++|+++++++..|++.|++ |.|+....+.. .+.+..-.
T Consensus 168 avi~~~~~~~K~~~~~~~~~P~~ailDP~l~~~~P~~~ta~tg~DAl~Hai---E~y~s~~~np~-------td~~a~~a 237 (395)
T PRK15454 168 TVIIDAVSGRKQVLAHASLMPDVAILDAALTEGVPSHVTAMTGIDALTHAI---EAYSALNATPF-------TDSLAIGA 237 (395)
T ss_pred EEEEcCCCCeeEEeeCCcccCCEEEEChhhhccCCHHHHHHHHHHHHHHHH---HHHHccCCCHH-------HHHHHHHH
Confidence 3444332 23333 334589999999999999999999999999999999 55554221111 22222222
Q ss_pred HHHHHhhhhhhccChhhhhhHH------------hhccc----hhHHHHhHhccCCCCCChHHHHHHHHHHHHH------
Q 023156 143 KRSCENKAEVVSLDEKESGLRA------------TLNLG----HTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------ 200 (286)
Q Consensus 143 ~~~~~~~~~~v~~d~~~~g~r~------------~l~~G----Ht~~Hale~~~~~~~~~HG~aVaig~~~~~~------ 200 (286)
.+.+....+.+.+|+.+...|. +.|.| |.++|++... | +++||+++|+-+|..++
T Consensus 238 i~li~~~l~~a~~~~~d~~AR~~m~~As~laG~a~~~~g~g~~Hal~h~lg~~--~-~ipHG~~~aillP~v~~~n~~~~ 314 (395)
T PRK15454 238 IAMIGKSLPKAVGYGHDLAARESMLLASCMAGMAFSSAGLGLCHAMAHQPGAA--L-HIPHGLANAMLLPTVMEFNRMVC 314 (395)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcccchHHHhhhhhhccC--C-CCCcHHHHHHHHHHHHHHhcccC
Confidence 2222222333444554443332 23334 7777776653 4 79999999999987554
Q ss_pred ------HHHHcCCC---CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCC
Q 023156 201 ------MSYRLGWI---DDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGD 270 (286)
Q Consensus 201 ------l~~~~g~~---~~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~ 270 (286)
+++.+|.. ..+.++++++|++++|+|+++.+. ++++++ +.+...-.. +.. + .+.. ..
T Consensus 315 ~~k~~~la~~l~~~~~~~~~~i~~i~~l~~~lglP~~L~e~gv~~~~~-~~ia~~a~~-~~~----~----~~nP---~~ 381 (395)
T PRK15454 315 RERFSQIGRALRTKKSDDRDAINAVSELIAEVGIGKRLGDVGATSAHY-GAWAQAALE-DIC----L----RSNP---RT 381 (395)
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH-HHHHHHHHh-ccc----c----cCCC---CC
Confidence 34445532 235688999999999999999875 666664 445443211 110 0 1122 47
Q ss_pred CCHHHHHHHHHH
Q 023156 271 YDRKALDDTLYA 282 (286)
Q Consensus 271 v~~~~~~~~~~~ 282 (286)
++++++++++++
T Consensus 382 ~t~e~i~~il~~ 393 (395)
T PRK15454 382 ASLEQIVGLYAA 393 (395)
T ss_pred CCHHHHHHHHHh
Confidence 889999999875
No 43
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=99.97 E-value=1.4e-29 Score=238.77 Aligned_cols=230 Identities=19% Similarity=0.175 Sum_probs=151.4
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhc----------------CCcEEEeccchhhccccCcCcc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLR----------------GVSFIQIPTTVMAQVDSSVGGK 65 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~----------------gip~i~VPTTl~~~~das~g~k 65 (286)
+.+.+.++.++++++| +||||||||++|+||++|..+.+ ++|+++||||.+++ |.++..
T Consensus 66 ~~v~~~~~~~~~~~~D---~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTG--SE~t~~ 140 (386)
T cd08191 66 SELCDAASAAARAGPD---VIIGLGGGSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTG--SEVTPV 140 (386)
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcch--hhhCCe
Confidence 3567788888888776 99999999999999999977643 79999999998773 445444
Q ss_pred eeeecCC--ccccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHh--------hcCC
Q 023156 66 TGINHRL--GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKL--------MARD 134 (286)
Q Consensus 66 ~~i~~~~--~k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~--------~~~~ 134 (286)
..+.... .|..+ ..+..|..+|+||+++.++|++++++|++|++.|++ |.|+.......... .+..
T Consensus 141 avi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~h~i---Ea~~s~~~~~~~~~~~~~~~~~~~p~ 217 (386)
T cd08191 141 AVLTDPDNAMKVGVASPHLRPAIAIIDPELTLTCPPGVTADSGADALTHAI---ESFTAMDRNPFPDGDADHVYSGKNAL 217 (386)
T ss_pred EEEEeCCCCceEEEeCCCcccCEEEECHHHhcCCCHHHHHHHHHHHHHHHH---HHHhCCCccccccccccccccCCCHH
Confidence 4444433 23333 234679999999999999999999999999999999 44443211000000 0001
Q ss_pred HHHHHHHHHHHHHhhhhhhccChhhhhhHH------------hhccc----hhHHHHhHhccCCCCCChHHHHHHHHHHH
Q 023156 135 PRAFAYAIKRSCENKAEVVSLDEKESGLRA------------TLNLG----HTFGHAIETGFGYGQWLHGEAVAAGMVMA 198 (286)
Q Consensus 135 ~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~------------~l~~G----Ht~~Hale~~~~~~~~~HG~aVaig~~~~ 198 (286)
++.+.+...+.+....+.+.+|+.+...|. +.|.| |.++|+|... + +++||+++|+-++..
T Consensus 218 sd~~a~~a~~li~~~l~~a~~~~~~~~ar~~~~~as~laG~a~~~~~~g~~Hal~~~l~~~--~-~i~HG~~~aillp~v 294 (386)
T cd08191 218 TDLFAREAIRLIGRSLPRAVRDGDDLEARTDMMLAALLAGLAFGTAGTAAVHALQYPVGAL--T-HTSHGFGVAALLPYV 294 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhhhcC--c-CCChHHHHHHHhHHH
Confidence 223322222333323333344554443332 12223 7777777654 4 799999999999875
Q ss_pred HH------------HHHHcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHH
Q 023156 199 VD------------MSYRLGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMA 243 (286)
Q Consensus 199 ~~------------l~~~~g~~----~-----~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~ 243 (286)
++ ++..+|.- + .+.++++++|++++|+|+++.+. ++.+++ +.+.
T Consensus 295 ~~~n~~~~~~k~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lglP~~L~e~gv~~~~~-~~~a 360 (386)
T cd08191 295 MRFNLPARREEFAEIGRVLGVAAGDHSADEQAAAAITRVEALLAAIGIPTTLAALGVTEADL-DGVA 360 (386)
T ss_pred HHHhhhhhHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH-HHHH
Confidence 54 23334432 1 23588999999999999999876 676664 4444
No 44
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=99.97 E-value=8.1e-30 Score=237.88 Aligned_cols=226 Identities=18% Similarity=0.174 Sum_probs=152.2
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh--------------------hcCCcEEEeccchhhcccc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVMAQVDS 60 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~--------------------~~gip~i~VPTTl~~~~da 60 (286)
+++++++++.+++.+ +|.|+||||||||++|+||++|..+ .+++|+|+||||+++. |
T Consensus 64 ~~~v~~~~~~~~~~~-~~~D~IIaiGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTG--S 140 (355)
T TIGR03405 64 VAQLDGLYARLWGDE-GACDLVIALGGGSVIDTAKVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTG--S 140 (355)
T ss_pred HHHHHHHHHHHHhcC-CCCCEEEEeCCccHHHHHHHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcch--h
Confidence 367899999999987 5667999999999999999998762 1468999999998763 3
Q ss_pred CcCcceeeecCC--ccccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHH
Q 023156 61 SVGGKTGINHRL--GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRA 137 (286)
Q Consensus 61 s~g~k~~i~~~~--~k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~ 137 (286)
.++....+..+. .|..+ ..+..|.++|+||+++.++|++++++|..|++.|++ |.|++..... + ++.
T Consensus 141 E~t~~avi~d~~~~~K~~~~~~~~~P~~ailDp~l~~t~P~~~~a~tg~Dal~hai---E~~~s~~~~p---~----sd~ 210 (355)
T TIGR03405 141 EVTPWATVWDAENSKKYSLHLPFTYPEAAIVDAALMLSLPREHTLSTGLDALSHAL---ESIWNVNANP---V----SRG 210 (355)
T ss_pred hhcCeEEEEeCCCCeeEEeccCCccCCEEEEChHHHcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCH---H----HHH
Confidence 344333333332 24333 334689999999999999999999999999999999 5554422111 1 222
Q ss_pred HHHHHHHHHHhhhhhhccChhhhhhHH------------hhccc----hhHHHHhHhccCCCCCChHHHHHHHHHHHHHH
Q 023156 138 FAYAIKRSCENKAEVVSLDEKESGLRA------------TLNLG----HTFGHAIETGFGYGQWLHGEAVAAGMVMAVDM 201 (286)
Q Consensus 138 l~~~i~~~~~~~~~~v~~d~~~~g~r~------------~l~~G----Ht~~Hale~~~~~~~~~HG~aVaig~~~~~~l 201 (286)
+..-..+.+....+.+..|+.+...|. +.|.| |.++|++... ++++||.++|+.++..+++
T Consensus 211 ~a~~a~~li~~~L~~~~~~~~d~~aR~~~~~as~laG~a~~~~~~g~~Hal~~~l~~~---~~i~HG~~~aillp~vl~~ 287 (355)
T TIGR03405 211 LAIQAAADISRALPEVLAQPGDLALRSDMALAALKAGLAFSNTKTALAHSISYEMTLR---HGVPHGIACSFTLPTVLRT 287 (355)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHhhchhccC---CCCCcHHHHHHHHHHHHHH
Confidence 222222222222233334554444332 12223 7777766553 3799999999999976543
Q ss_pred ------------HHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHh
Q 023156 202 ------------SYRLGWIDDSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAV 244 (286)
Q Consensus 202 ------------~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~ 244 (286)
++.+| ...+.++++++|++++|+|+++.+. ++.+++ +.+..
T Consensus 288 n~~~~~~~~~~~~~~~g-~~~~~~~~i~~l~~~lglP~~L~~~gv~~~~~-~~~a~ 341 (355)
T TIGR03405 288 ALGRNPSRDALLQAVFG-DTASAPARLRAFLDTLGVKTRFADYGVSRDEA-RRMVG 341 (355)
T ss_pred hhccCHHHHHHHHHHhC-cHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHH-HHHHH
Confidence 22234 2245688999999999999999875 666664 44443
No 45
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=99.97 E-value=4e-29 Score=237.55 Aligned_cols=262 Identities=19% Similarity=0.156 Sum_probs=170.5
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh---------------cC-------CcEEEeccchhhccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL---------------RG-------VSFIQIPTTVMAQVD 59 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~---------------~g-------ip~i~VPTTl~~~~d 59 (286)
+++.++++.++++++| +||||||||++|+||++|..+. ++ +|++.||||.++.
T Consensus 67 ~~v~~~~~~~~~~~~D---~IIaiGGGSviD~AKaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagTG-- 141 (414)
T cd08190 67 ESFKDAIAFAKKGQFD---AFVAVGGGSVIDTAKAANLYASHPDADFLDYVNAPIGKGKPPPGPLKPLIAIPTTAGTG-- 141 (414)
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCccHHHHHHHHHHHHhCCCCCHHHHHhhccccccccCCCCCCEEEeCCCCchh--
Confidence 6789999999999987 9999999999999999985432 22 6999999998763
Q ss_pred cCcCcceeeecCC--ccccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHH-HhH----HH--
Q 023156 60 SSVGGKTGINHRL--GKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQE-QNM----HK-- 129 (286)
Q Consensus 60 as~g~k~~i~~~~--~k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~-~~~----~~-- 129 (286)
|.++....++.+. .|..+ .....|.++|+||+++.|+|++++++|..|+++|++ |.|++... ... ..
T Consensus 142 SE~t~~avi~~~~~~~K~~i~~~~~~P~~ailDp~l~~tlP~~~ta~tg~DAl~hai---Eay~s~~~~~~~~~~~~~~~ 218 (414)
T cd08190 142 SETTGVAIFDLPELKAKTGIASRALKPTLGIVDPLNTLTMPSRVTASSGLDVLCHAL---ESYTAIPYNQRPPRPSNPIQ 218 (414)
T ss_pred hhhccceeeeccCCCeeEEeeCCCccCCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHhcccccccccccccccc
Confidence 4444433344333 23333 234579999999999999999999999999999999 66654210 000 00
Q ss_pred -----hhcCCHHHHHHHHHHHHHhhhhhhccChhhhhhHH------------hhccc----hhHHHHhHhccC------C
Q 023156 130 -----LMARDPRAFAYAIKRSCENKAEVVSLDEKESGLRA------------TLNLG----HTFGHAIETGFG------Y 182 (286)
Q Consensus 130 -----~~~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~------------~l~~G----Ht~~Hale~~~~------~ 182 (286)
..+..++.+.+...+.+....+.+..|+.+...|. +.|.| |.++|++....+ |
T Consensus 219 ~~~~~~~~p~sd~~a~~ai~li~~~l~~a~~~~~d~~AR~~~~~As~laG~a~~~~g~~~~Hai~~~l~~~~~~~~~~~~ 298 (414)
T cd08190 219 RPAYQGSNPISDIWSLQALRIVGKYLRRAVADPDDLEARSQMHLASTFAGIGFGNAGVHLCHGMSYPIAGLVKDYKAPDY 298 (414)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHhCcchhhhhHhccHhhcCcCccccccc
Confidence 00011233333333333333444445565544442 22333 888888877532 1
Q ss_pred ----CCCChHHHHHHHHHHHHHH------------HHHcCCC----CH-----HHHHHHHHHHHHcCCCCCCCCC-CCHH
Q 023156 183 ----GQWLHGEAVAAGMVMAVDM------------SYRLGWI----DD-----SIVKRVHNILQQAKLPTAPPDT-MTVE 236 (286)
Q Consensus 183 ----~~~~HG~aVaig~~~~~~l------------~~~~g~~----~~-----~~~~~i~~~l~~~glp~~l~~~-~~~~ 236 (286)
++++||+++|+.+|..+++ ++.+|.- +. +.++++++|++++|+|+++.+. ++.+
T Consensus 299 ~~~~~~ipHG~~~ai~lp~vl~~n~~~~~~k~~~~a~~lg~~~~~~~~~~~~~~~i~~i~~l~~~lglP~~L~e~Gv~~~ 378 (414)
T cd08190 299 PVDHPLVPHGLSVVVTAPAVFRFTAPACPERHLEAAEILGADTSNAKIEDAGEVLADALRKLMRDLGVPDGLAALGYTES 378 (414)
T ss_pred cccCCCCChHHHHHHHHHHHHHhhhhhCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHH
Confidence 1389999999999976542 3444542 11 2378999999999999999875 6777
Q ss_pred HHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHH
Q 023156 237 MFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 237 ~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~ 283 (286)
++ +.+.... .++.+ + +. +.. ..++++++++++++.
T Consensus 379 ~~-~~ia~~a-~~~~~--~-~~----~np---~~~t~~~i~~il~~~ 413 (414)
T cd08190 379 DI-PALVKGT-LPQQR--V-LK----LAP---RPVDEEDLAALFEES 413 (414)
T ss_pred HH-HHHHHHH-Hhccc--c-cc----CCC---CCCCHHHHHHHHHHh
Confidence 65 5665522 21111 0 01 122 478899999999864
No 46
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=99.97 E-value=2.5e-29 Score=233.28 Aligned_cols=252 Identities=20% Similarity=0.183 Sum_probs=175.7
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcC----------------CcEEEeccchhhccccCcCc
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRG----------------VSFIQIPTTVMAQVDSSVGG 64 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~g----------------ip~i~VPTTl~~~~das~g~ 64 (286)
++++.++++.++++++| +|||+||||++|+||.++..+..+ .|+|+||||..+. |-++.
T Consensus 72 ~~~v~~~~~~~~~~~~D---~iIalGGGS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTG--SEvT~ 146 (377)
T COG1454 72 IETVEAGAEVAREFGPD---TIIALGGGSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTG--SEVTP 146 (377)
T ss_pred HHHHHHHHHHHHhcCCC---EEEEeCCccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcch--hhhcC
Confidence 36889999999999998 999999999999999999877532 8999999997664 33433
Q ss_pred ceeeecCCc--ccccccc-cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHH
Q 023156 65 KTGINHRLG--KNLIGAF-YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYA 141 (286)
Q Consensus 65 k~~i~~~~~--k~~~g~~-~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~ 141 (286)
...+..+.. |..+... ..|..+|+||+++.++|+..++++..|++.|++ |.|.+. ..+..++.+..-
T Consensus 147 ~aVitd~~~~~K~~i~~~~l~Pd~aI~Dp~lt~~~P~~ltA~TGmDALtHAi---EAy~s~-------~a~p~tD~~A~~ 216 (377)
T COG1454 147 FAVITDEETGVKYAIADPELLPDVAILDPELTLGMPPSLTAATGMDALTHAI---EAYVSP-------AANPITDALALE 216 (377)
T ss_pred eEEEEeCCCcceeeccCcccCCCEEEEChHHhcCCChHhhhhhhHHHHHHHH---HHHHcC-------CCCcchHHHHHH
Confidence 334444333 3333332 469999999999999999999999999999999 444432 222223433322
Q ss_pred HHHHHHhhhhhhccChhhhhhHH----------------hhccchhHHHHhHhccCCCCCChHHHHHHHHHHHHH-----
Q 023156 142 IKRSCENKAEVVSLDEKESGLRA----------------TLNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD----- 200 (286)
Q Consensus 142 i~~~~~~~~~~v~~d~~~~g~r~----------------~l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~----- 200 (286)
..+.+...++....|+.+...|. .+++.|.++|.+... | +++||.++|+-+|+..+
T Consensus 217 ai~li~~~L~~a~~~g~d~eARe~m~~aa~lAGmAF~na~lG~~HalaH~lG~~--~-~~pHG~~nAillP~V~~fN~~~ 293 (377)
T COG1454 217 AIKLIFEYLPRAVADGDDLEAREKMHLAATLAGMAFANAGLGLVHALAHPLGAL--F-HIPHGLANAILLPYVIRFNAEA 293 (377)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcchhHHHHHHhhcccccc--c-cCchHHHhhHhhHHHHHHhhhh
Confidence 33333333445555555554442 234459999988875 4 79999999999997543
Q ss_pred -------HHHHcCCCC-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEE
Q 023156 201 -------MSYRLGWID-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVF 267 (286)
Q Consensus 201 -------l~~~~g~~~-----~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~ 267 (286)
+++.+|+-. +..++.+.+|.+++|+|.++++. ++++++ +.+..+--. ++ - ..++.
T Consensus 294 a~~r~a~iA~~lg~~~~~~~~~~~i~~i~~L~~~lgip~~L~d~Gv~~~~i-~~~a~~A~~--d~------~-~~~NP-- 361 (377)
T COG1454 294 APERYARIARALGLPGEGDAADALIDALRELLERLGIPKRLRDLGVKEEDI-DKLAEDALA--DP------C-TATNP-- 361 (377)
T ss_pred hHHHHHHHHHHhCCCCccchHHHHHHHHHHHHHHcCCCCcHHHcCCCHHHH-HHHHHHHHh--Cc------c-cCCCC--
Confidence 445566532 34689999999999999999885 666654 444443222 11 1 12333
Q ss_pred cCCCCHHHHHHHHHHH
Q 023156 268 TGDYDRKALDDTLYAF 283 (286)
Q Consensus 268 ~~~v~~~~~~~~~~~~ 283 (286)
++++.+++++++++.
T Consensus 362 -r~~t~ed~~~i~~~a 376 (377)
T COG1454 362 -RPPTREDIKEIYEAA 376 (377)
T ss_pred -CCCCHHHHHHHHHHh
Confidence 578899999999864
No 47
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=99.97 E-value=3.7e-29 Score=235.67 Aligned_cols=250 Identities=19% Similarity=0.271 Sum_probs=166.5
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh----------------hcCCcEEEeccchhhccccCcCcc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY----------------LRGVSFIQIPTTVMAQVDSSVGGK 65 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~----------------~~gip~i~VPTTl~~~~das~g~k 65 (286)
+++.++++.++++++| +||||||||++|+||++|..+ .+++|+|.||||.++ +|.+...
T Consensus 73 ~~v~~~~~~~~~~~~D---~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagT--GsE~t~~ 147 (382)
T cd08187 73 ETVREGIELCKEEKVD---FILAVGGGSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAAT--GSEMNGG 147 (382)
T ss_pred HHHHHHHHHHHHcCCC---EEEEeCChHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCch--hhccCCC
Confidence 6789999999999887 999999999999999998754 357999999999776 3445444
Q ss_pred eeeecCC--cccccc-cccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHH
Q 023156 66 TGINHRL--GKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAI 142 (286)
Q Consensus 66 ~~i~~~~--~k~~~g-~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i 142 (286)
..+.... .|..+. ....|..+|+||+++.++|++++++|.+|++.|++ |.|++.... +...+.+....
T Consensus 148 avi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~aatg~Dal~h~~---E~~~s~~~~------~~~~~~~a~~a 218 (382)
T cd08187 148 AVITNEETKEKLGFGSPLLRPKFSILDPELTYTLPKYQTANGIVDIFSHVM---EQYFTYPVD------ADLQDRLAEGL 218 (382)
T ss_pred EEEeccccCccccccCCCcCceEEEEChHHhccCCHHHHHHHHHHHHHHHH---HHHhCCCCC------CchHHHHHHHH
Confidence 4444432 233332 23579999999999999999999999999999998 443321100 11123333333
Q ss_pred HHHHHhhhhhhccChhhhhhHH------------hhcc-------chhHHHHhHhccCCCCCChHHHHHHHHHHHHH---
Q 023156 143 KRSCENKAEVVSLDEKESGLRA------------TLNL-------GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD--- 200 (286)
Q Consensus 143 ~~~~~~~~~~v~~d~~~~g~r~------------~l~~-------GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~--- 200 (286)
.+.+....+.+..|+.+...|. +.|. .|.++|++... + +++||+++|+.++..++
T Consensus 219 ~~li~~~l~~a~~~~~~~~ar~~l~~as~lag~a~~~~g~~~~~~~Hal~~~l~~~--~-~i~HG~~~ai~lp~v~~~n~ 295 (382)
T cd08187 219 LKTVIENGPKALKNPEDYEARANIMWAATLALNGLIGVGRPQDWATHMIEHELSAL--Y-DIAHGAGLAIVTPAWMRYVY 295 (382)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhccCCCCCcccchhccHhhcC--c-CCCcHHHHHHHHHHHHHHHH
Confidence 3344434444445555544432 1222 28999988864 4 69999999999986553
Q ss_pred ---------HHHH-cCCC----C----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCC
Q 023156 201 ---------MSYR-LGWI----D----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGP 261 (286)
Q Consensus 201 ---------l~~~-~g~~----~----~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~ 261 (286)
+++. +|.. + .+.++++.+|++++|+|+++.+. ++++++ +.+...-.. +...
T Consensus 296 ~~~~~~~~~la~~~~g~~~~~~~~~~~~~~~~~i~~l~~~lglP~~L~~~gv~~~~l-~~~a~~a~~-~~~~-------- 365 (382)
T cd08187 296 KEKPAKFAQFAKRVWGIEPEGDDEETALEGIEATEEFFKSLGLPTTLSELGIGEEDI-DEMAEKATA-NGGL-------- 365 (382)
T ss_pred hhCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCcHHHcCCCHHHH-HHHHHHHHh-cCcc--------
Confidence 2221 2332 1 23578999999999999999875 666664 444442221 1110
Q ss_pred CcceEEcCCCCHHHHHHHHH
Q 023156 262 LGNCVFTGDYDRKALDDTLY 281 (286)
Q Consensus 262 iG~~~~~~~v~~~~~~~~~~ 281 (286)
..+. ..++.++++++++
T Consensus 366 ~~nP---~~~t~~~i~~i~~ 382 (382)
T cd08187 366 GGGF---KKLTKEDIREILK 382 (382)
T ss_pred cCCC---CCCCHHHHHHHhC
Confidence 1112 4678899988763
No 48
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=99.97 E-value=3.7e-29 Score=235.75 Aligned_cols=257 Identities=16% Similarity=0.042 Sum_probs=166.9
Q ss_pred ChHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh-----------------hcCCcEEEeccchhhccccCcC
Q 023156 1 MDTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-----------------LRGVSFIQIPTTVMAQVDSSVG 63 (286)
Q Consensus 1 ~~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~-----------------~~gip~i~VPTTl~~~~das~g 63 (286)
++++.++++.++++++| +||||||||++|+||++|..+ ...+|++.||||.++. |.++
T Consensus 70 ~~~v~~~~~~~~~~~~D---~IIaiGGGS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTG--SE~t 144 (383)
T cd08186 70 VDQVDEAAKLGREFGAQ---AVIAIGGGSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTG--TEVD 144 (383)
T ss_pred HHHHHHHHHHHHHcCCC---EEEEeCCccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhh--hhhC
Confidence 36789999999999887 999999999999999998753 1368999999997663 4555
Q ss_pred cceeeecCCc--cccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHH
Q 023156 64 GKTGINHRLG--KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAY 140 (286)
Q Consensus 64 ~k~~i~~~~~--k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~ 140 (286)
..+.+..... |..+ .....|..+|+||+++.++|++++++|..|++.|++ |.|+....+ .+ ++.+..
T Consensus 145 ~~avi~~~~~~~K~~~~~~~~~P~~ai~Dp~l~~~~P~~~~a~tg~DAl~Hai---E~~~s~~~~---~~----sd~~a~ 214 (383)
T cd08186 145 RFAVASIDETEEKPGIAYDCIYPDYSIDDPALTTTLPPDQTIYTSIDALNHVV---EAATTTTAN---PY----SILLAK 214 (383)
T ss_pred CeEEEEEcCCCceEEEeCCccccCEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCC---HH----HHHHHH
Confidence 5555554432 3222 233579999999999999999999999999999998 555432111 11 223322
Q ss_pred HHHHHHHhhhhhhccChhhhhhHH------------hhccc----hhHHHHhHhccCCCCCChHHHHHHHHHHHHH----
Q 023156 141 AIKRSCENKAEVVSLDEKESGLRA------------TLNLG----HTFGHAIETGFGYGQWLHGEAVAAGMVMAVD---- 200 (286)
Q Consensus 141 ~i~~~~~~~~~~v~~d~~~~g~r~------------~l~~G----Ht~~Hale~~~~~~~~~HG~aVaig~~~~~~---- 200 (286)
...+.+....+.+..|+.+...|. +.|.| |.++|++... +.+++||+++|+-++..++
T Consensus 215 ~a~~li~~~l~~a~~~~~~~~ar~~m~~as~laG~a~~~~~~g~~Hai~~~l~~~--~~~ipHG~~~aillp~vl~~n~~ 292 (383)
T cd08186 215 EAVRLIAEYLPKALEEPDNLQARYWLLYASAIAGIAIDNGLLHLTHALEHPLSAL--KPDLPHGAGLAILLPAVVKHIYP 292 (383)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHhcCchhcC--CCCCChHHHHHHHHHHHHHHhhh
Confidence 223333333344445555544432 22323 6666666543 1379999999998887654
Q ss_pred --------HHHHcCCC--C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcc
Q 023156 201 --------MSYRLGWI--D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGN 264 (286)
Q Consensus 201 --------l~~~~g~~--~-----~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~ 264 (286)
+++.++.. . .+.++++++|++++|+|+++.+. ++++++ +.+...-.. +......+.. .
T Consensus 293 ~~~~~~~~la~~~~~~~~~~~~~a~~~i~~l~~l~~~lglP~~L~~~gv~~~~~-~~~a~~a~~-~~~~~~~~~~----n 366 (383)
T cd08186 293 ATPEILAELLRPLVPGLKGVPEEAEKAAKAVEKWLFSIGITEKLSDYGFTEGDV-EKLTELAVT-TPSLKLLLSL----A 366 (383)
T ss_pred hCHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHCCCCCCHHHcCCCHHHH-HHHHHHHHh-cccccccccC----C
Confidence 33333311 1 23588999999999999999876 666654 444432111 1111000111 1
Q ss_pred eEEcCCCCHHHHHHHHHHH
Q 023156 265 CVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 265 ~~~~~~v~~~~~~~~~~~~ 283 (286)
. .+++++++.+++++.
T Consensus 367 P---~~~t~e~i~~il~~~ 382 (383)
T cd08186 367 P---VEASREVIARIYTDS 382 (383)
T ss_pred C---CCCCHHHHHHHHHHh
Confidence 2 478899999998764
No 49
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=99.97 E-value=8.4e-29 Score=232.72 Aligned_cols=249 Identities=20% Similarity=0.226 Sum_probs=161.3
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHH----------------hhcCCcEEEeccchhhccccCcCcc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS----------------YLRGVSFIQIPTTVMAQVDSSVGGK 65 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~----------------~~~gip~i~VPTTl~~~~das~g~k 65 (286)
+++.++++.++++++| +||||||||++|+||++|.. +.+++|++.||||.++ +|.+++.
T Consensus 67 ~~v~~~~~~~~~~~~D---~IIaiGGGS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagt--GsE~t~~ 141 (375)
T cd08194 67 ESVEEGVKLAKEGGCD---VIIALGGGSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTTAGT--GSEVTRF 141 (375)
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCCCcc--ccccCCe
Confidence 6789999999999887 99999999999999999864 3468999999999766 3555443
Q ss_pred eeeecCC--cccc-cccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHH
Q 023156 66 TGINHRL--GKNL-IGAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAI 142 (286)
Q Consensus 66 ~~i~~~~--~k~~-~g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i 142 (286)
..+..+. .|.. .+....|.++|+||+++.++|++++++|..|++.|++ +.|+....+. ..+.+.+-.
T Consensus 142 avi~~~~~~~K~~~~~~~~~P~~~i~Dp~l~~~~P~~~~aatg~Dal~h~i---E~~~s~~~~~-------~s~~~a~~a 211 (375)
T cd08194 142 TVITDTKTDEKMLLKGLALLPKAAIVDPELTLTSPPRVTAATGIDALTHAI---EAYVSRKAQP-------MTDLFALSA 211 (375)
T ss_pred EEEEECCCCceEEEeCCcccCCEEEEChHHHcCCCHHHHHHHHHHHHHHHH---HHHHcCCCCH-------HHHHHHHHH
Confidence 3343332 2332 3455789999999999999999999999999999998 5444321111 122222222
Q ss_pred HHHHHhhhhhhccChhhhhhHH------------hhcc----chhHHHHhHhccCCCCCChHHHHHHHHHHHHH------
Q 023156 143 KRSCENKAEVVSLDEKESGLRA------------TLNL----GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD------ 200 (286)
Q Consensus 143 ~~~~~~~~~~v~~d~~~~g~r~------------~l~~----GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~------ 200 (286)
.+.+....+...+|+.+...|. +.|. .|.++|++... + +++||+++|+.++..++
T Consensus 212 ~~li~~~l~~a~~~~~~~~ar~~l~~as~laG~a~~~~~~g~~Hal~~~l~~~--~-~i~HG~~~ai~lp~v~~~~~~~~ 288 (375)
T cd08194 212 IKLIGKNLRTAYLNPDNREAREEMMLGATEAGIAFSNASVALVHGMSRPIGAL--F-HVPHGLSNAMLLPAVTEFSLPSA 288 (375)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhhC--C-CCChHHHHHHHHHHHHHhhcccC
Confidence 2222222233334444433332 2222 37777776553 3 79999999998887554
Q ss_pred ------HHHHcCCC----C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHH---HHHHHhchhccCCeeEEEeecCC
Q 023156 201 ------MSYRLGWI----D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMF---KSIMAVDKKVADGLLRLILLKGP 261 (286)
Q Consensus 201 ------l~~~~g~~----~-----~~~~~~i~~~l~~~glp~~l~~~-~~~~~~---~~~l~~dkk~~~~~~~~~l~~~~ 261 (286)
+++.+|.. + .+.++++.+|++++|+|+ +.+. ++.++. ++.+.... ..++. ..
T Consensus 289 ~~~~~~~a~~lg~~~~~~~~~~~~~~~~~~i~~l~~~~glP~-L~~~gv~~~~~~~~l~~~a~~a-~~~~~-----~~-- 359 (375)
T cd08194 289 PERYADIARAMGEANEGDSDREAAEKLIEALKELNRELEVPT-LREYGIDKDAFMALIPKMAEDA-IASGS-----PA-- 359 (375)
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCC-HHhcCCChHhhhhhHHHHHHHH-HhCcC-----CC--
Confidence 33345542 1 234788999999999995 8764 555541 34444321 11111 01
Q ss_pred CcceEEcCCCCHHHHHHHHH
Q 023156 262 LGNCVFTGDYDRKALDDTLY 281 (286)
Q Consensus 262 iG~~~~~~~v~~~~~~~~~~ 281 (286)
+.. ..+++++++++++
T Consensus 360 -~~p---~~~~~~~i~~i~~ 375 (375)
T cd08194 360 -NNP---RVPTKAEIIELYE 375 (375)
T ss_pred -CCC---CCCCHHHHHHHhC
Confidence 122 4678999988863
No 50
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=99.97 E-value=9.2e-29 Score=232.38 Aligned_cols=248 Identities=18% Similarity=0.148 Sum_probs=161.6
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh--------------------hcCCcEEEeccchhhccccC
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVMAQVDSS 61 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~--------------------~~gip~i~VPTTl~~~~das 61 (286)
+.+.++++.++++++| +||||||||++|+||++|..+ .+++|+|+||||.++. |.
T Consensus 62 ~~v~~~~~~~~~~~~D---~IIaiGGGS~~D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTG--SE 136 (374)
T cd08183 62 ELVDAAVAEARNAGCD---VVIAIGGGSVIDAGKAIAALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTG--SE 136 (374)
T ss_pred HHHHHHHHHHHhcCCC---EEEEecCchHHHHHHHHHHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchh--HH
Confidence 5788999999999887 999999999999999998764 1478999999997763 44
Q ss_pred cCcceeeecC--Cccccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHH
Q 023156 62 VGGKTGINHR--LGKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAF 138 (286)
Q Consensus 62 ~g~k~~i~~~--~~k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l 138 (286)
++....+..+ +.|..+ ..+..|..+|+||+++.++|++++++|..|++.|++ |.|++...+. .++.+
T Consensus 137 ~t~~avi~~~~~~~K~~~~~~~~~P~~ai~Dp~l~~~lP~~~~aatg~Dal~ha~---E~~~s~~~~p-------~sd~~ 206 (374)
T cd08183 137 VTKNAVISVPGAGFKVSLRHPRMLPDVAIVDPELTLSCPRSVTAASGLDALTQLL---EPYLSPRANP-------LTDAL 206 (374)
T ss_pred hCCeEEEEecCCCeeEEeecccccCCEEEEChHHhcCCChhhHHHHHHHHHHHHH---HHHHcCCCCh-------HHHHH
Confidence 4443344433 234433 334689999999999999999999999999999998 5544321111 12222
Q ss_pred HHHHHHHHHhhhhhhccChhhhhhHH------------hhccc----hhHHHHhHhccCCCCCChHHHHHHHHHHHHHHH
Q 023156 139 AYAIKRSCENKAEVVSLDEKESGLRA------------TLNLG----HTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMS 202 (286)
Q Consensus 139 ~~~i~~~~~~~~~~v~~d~~~~g~r~------------~l~~G----Ht~~Hale~~~~~~~~~HG~aVaig~~~~~~l~ 202 (286)
..-..+.+....+....|+.+...|. +.|.| |.++|++... | +++||+++|+-+|..+++.
T Consensus 207 a~~ai~~i~~~l~~a~~~~~~~~ar~~~~~as~laG~a~~~~g~g~~Hai~h~lg~~--~-~i~HG~a~ai~lp~vl~~~ 283 (374)
T cd08183 207 CRSGLPRGARALRRACENGEDAAARDDMALASLLGGIALANAGLGAVHGLAGPIGGL--F-DAPHGAICATLLPPVLAAN 283 (374)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhhhhhHHHHHhhchhhcC--C-CCChHHHHHHHHHHHHHHh
Confidence 22122222222233334444433332 22333 7777777653 4 7999999999999766532
Q ss_pred H---------------------HcCCCC----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEE
Q 023156 203 Y---------------------RLGWID----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLI 256 (286)
Q Consensus 203 ~---------------------~~g~~~----~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~ 256 (286)
. .+|... .+.++++++|++++|+| ++++. ++.+++ +.+.... ..+..
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~l~~~lglP-~L~e~gv~~~~~-~~ia~~a-~~~~~---- 356 (374)
T cd08183 284 IRALRQRGPGNPALAAYREVAGLLTGNLEAAADDLVEWLEHWVDELGLP-RLSDYGLTPDDL-DAVVEAA-AGSSS---- 356 (374)
T ss_pred hhhCchhhhhhhhHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHcCCC-ChhhcCCCHHHH-HHHHHHH-HhCcc----
Confidence 1 112211 23578899999999999 99876 677665 5554422 11110
Q ss_pred eecCCCcceEEcCCCCHHHHHHHHH
Q 023156 257 LLKGPLGNCVFTGDYDRKALDDTLY 281 (286)
Q Consensus 257 l~~~~iG~~~~~~~v~~~~~~~~~~ 281 (286)
+. +.. ..+++++++++++
T Consensus 357 ~~----~~p---~~~t~~~i~~i~~ 374 (374)
T cd08183 357 MK----GNP---VPLSDAELLEILE 374 (374)
T ss_pred cc----CCC---CCCCHHHHHHHhC
Confidence 01 122 4678999988864
No 51
>PRK10586 putative oxidoreductase; Provisional
Probab=99.96 E-value=4.1e-29 Score=233.29 Aligned_cols=253 Identities=16% Similarity=0.181 Sum_probs=151.3
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCCcc-cccccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRLGK-NLIGAF 80 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~~k-~~~g~~ 80 (286)
++++++.+... .++ |+|||||||+++|+||++| +..++|+++||||.++ |+.++....+....++ .....+
T Consensus 74 ~~v~~l~~~~~-~~~---d~iiavGGGs~iD~aK~~a--~~~~~p~i~vPT~a~t--~s~~s~~avi~~~~~~~~~~~~~ 145 (362)
T PRK10586 74 SDVAQLAAASG-DDR---QVVIGVGGGALLDTAKALA--RRLGLPFVAIPTIAAT--CAAWTPLSVWYNDAGQALHFEIF 145 (362)
T ss_pred HHHHHHHHHhc-cCC---CEEEEecCcHHHHHHHHHH--hhcCCCEEEEeCCccc--cccccCceEEECCCCCeeeeccc
Confidence 45566555443 344 5999999999999999996 4579999999999877 5666554444443332 222222
Q ss_pred -cCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHH--------Hhh-h
Q 023156 81 -YQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSC--------ENK-A 150 (286)
Q Consensus 81 -~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~--------~~~-~ 150 (286)
..|.++|+||+++.++|.+++++|++|++.|.. +.++..-..............+.+.+.+.+ ... .
T Consensus 146 ~~~p~~~i~D~~l~~~~P~~~~~ag~~Dal~~~~---Ea~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~a~~~~~~ 222 (362)
T PRK10586 146 DDANFLVLVEPRIILNAPQEYLLAGIGDTLAKWY---EAVVLAPQPETLPLTVRLGINNALAIRDVLLNSSEQALADQQN 222 (362)
T ss_pred CCCCCEEEEChHHHhcCCHHHHHHHHHHHHHHHH---HHHHccccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 359999999999999999999999999998766 332210000000000000001111111111 100 0
Q ss_pred hhhcc--------ChhhhhhHHhhcc-------chhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Q 023156 151 EVVSL--------DEKESGLRATLNL-------GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGWIDDSIVKR 215 (286)
Q Consensus 151 ~~v~~--------d~~~~g~r~~l~~-------GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~~~~ 215 (286)
..+.+ .....|+-..+++ .|.+.|++......++++|||+||+||.+++++. | +++++++
T Consensus 223 ~~~~~~~~~vv~a~i~~~g~~s~~g~~~~~~a~aHai~~~lt~~~~~~~~lHGeaVa~G~l~~l~l~---~--~~~~~~~ 297 (362)
T PRK10586 223 GQLTQDFCDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTVLPQTEKFLHGTKVAYGILVQSALL---G--QDDVLAQ 297 (362)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhhcccCCCccHHHHHHHHccccccCCCcCCCHHHHHHHHHHHHHHc---C--CHHHHHH
Confidence 01111 1111222222222 2555555554322236899999999999998884 3 4668999
Q ss_pred HHHHHHHcCCCCCCCCC-CCH--HHHHHHHHhchhccCC-eeEEEeecCCCcceEEcCCCCHHHHHHHHHH
Q 023156 216 VHNILQQAKLPTAPPDT-MTV--EMFKSIMAVDKKVADG-LLRLILLKGPLGNCVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 216 i~~~l~~~glp~~l~~~-~~~--~~~~~~l~~dkk~~~~-~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~ 282 (286)
+.++++++|+|+++.+. ++. ++.++.+.. +..+.+ .++. +| .++++|++++++++
T Consensus 298 l~~~l~~lGLP~~L~dlGi~~~~~e~l~~ia~-~a~~~~~~~~~-~p----------~~vt~e~i~~ai~~ 356 (362)
T PRK10586 298 LIGAYQRFHLPTTLAELDVDINNQAEIDRVIA-HTLRPVESIHY-LP----------VTLTPDTLRAAFEK 356 (362)
T ss_pred HHHHHHHcCCCCCHHHCCCCCCCHHHHHHHHH-HHcCCcchhhc-CC----------CCCCHHHHHHHHHH
Confidence 99999999999998775 542 334566543 444433 2111 11 36789999999875
No 52
>PRK15138 aldehyde reductase; Provisional
Probab=99.96 E-value=6.5e-28 Score=227.34 Aligned_cols=252 Identities=19% Similarity=0.250 Sum_probs=164.7
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh-------------------cCCcEEEeccchhhccccCc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-------------------RGVSFIQIPTTVMAQVDSSV 62 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~-------------------~gip~i~VPTTl~~~~das~ 62 (286)
++++++.+.+++.++| +||||||||++|+||++|..+. ..+|++.||||..+. |.+
T Consensus 72 ~~v~~~~~~~~~~~~D---~IIaiGGGS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTG--SE~ 146 (387)
T PRK15138 72 ETLMKAVKLVREEKIT---FLLAVGGGSVLDGTKFIAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATG--SES 146 (387)
T ss_pred HHHHHHHHHHHHcCCC---EEEEeCChHHHHHHHHHHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccc--ccc
Confidence 6789999999999888 9999999999999999986431 247999999997763 444
Q ss_pred CcceeeecC--Cccccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHH
Q 023156 63 GGKTGINHR--LGKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFA 139 (286)
Q Consensus 63 g~k~~i~~~--~~k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~ 139 (286)
+....+... +.|..+ .....|..+|+||+++.++|++++++|++|++.|++ |.|+.....+ .+ .+.+.
T Consensus 147 t~~avit~~~~~~K~~~~~~~~~P~~aivDP~l~~~~P~~~taatg~DAl~hai---E~y~s~~~~~--~~----td~~A 217 (387)
T PRK15138 147 NAGAVISRKTTGDKQAFHSPHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTV---EQYVTYPVDA--KI----QDRFA 217 (387)
T ss_pred CCCEEEEecCCCeeeeecCcchheeEEEECcHHhcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCC--hH----HHHHH
Confidence 443444332 224333 345679999999999999999999999999999998 4444311000 01 22222
Q ss_pred HHHHHHHHhhhhhhccChhhhhhHH------------hhc--c-----chhHHHHhHhccCCCCCChHHHHHHHHHHHHH
Q 023156 140 YAIKRSCENKAEVVSLDEKESGLRA------------TLN--L-----GHTFGHAIETGFGYGQWLHGEAVAAGMVMAVD 200 (286)
Q Consensus 140 ~~i~~~~~~~~~~v~~d~~~~g~r~------------~l~--~-----GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~ 200 (286)
....+.+....+....|+.+...|. +.| . .|.++|++... | +++||.++|+-+|..++
T Consensus 218 ~~a~~~i~~~l~~a~~~~~~~~aR~~m~~as~lag~a~~~~g~~~~~~~Hal~h~lg~~--~-~i~HG~~~ai~lP~vl~ 294 (387)
T PRK15138 218 EGILLTLIEEGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAM--H-GLDHAQTLAIVLPALWN 294 (387)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhccCCCCCchhhhhcchhhhc--c-CCchHHHHHHHHHHHHH
Confidence 2222222222333334454444432 122 2 28888888764 4 79999999999997554
Q ss_pred H------------HHHc-CCC--C-----HHHHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeec
Q 023156 201 M------------SYRL-GWI--D-----DSIVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLK 259 (286)
Q Consensus 201 l------------~~~~-g~~--~-----~~~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~ 259 (286)
+ ++.+ +.. + ...++++++|++++|+|+++.+. ++++++ +.+...- ..+.. + .
T Consensus 295 ~~~~~~~~k~~~~a~~~~~~~~~~~~~~~~~~i~~i~~l~~~lg~p~~L~~~gv~~~d~-~~~a~~a-~~~~~--~--~- 367 (387)
T PRK15138 295 EKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFFEQMGVPTRLSDYGLDGSSI-PALLKKL-EEHGM--T--Q- 367 (387)
T ss_pred HhhhhCHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHcCCCCcHHHcCCCHHHH-HHHHHHH-HhcCc--c--c-
Confidence 3 2223 221 1 23478899999999999999876 676664 4444321 11111 0 0
Q ss_pred CCCcceEEcCCCCHHHHHHHHHH
Q 023156 260 GPLGNCVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 260 ~~iG~~~~~~~v~~~~~~~~~~~ 282 (286)
.++. +.++.+++++++++
T Consensus 368 --~~np---~~~~~~~i~~il~~ 385 (387)
T PRK15138 368 --LGEH---HDITLDVSRRIYEA 385 (387)
T ss_pred --CCCC---CCCCHHHHHHHHHh
Confidence 1222 57899999999875
No 53
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=99.96 E-value=5.4e-28 Score=225.80 Aligned_cols=247 Identities=15% Similarity=0.142 Sum_probs=157.6
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHH---------------hhcCCcEEEeccchhhccccCcCcce
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---------------YLRGVSFIQIPTTVMAQVDSSVGGKT 66 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~---------------~~~gip~i~VPTTl~~~~das~g~k~ 66 (286)
+++.+++++++++++| +||||||||++|+||++|.. +.+++|+|.||||++++ |.++...
T Consensus 70 ~~v~~~~~~~~~~~~D---~IIavGGGSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTG--sE~t~~a 144 (357)
T cd08181 70 ETIMEAVEIAKKFNAD---FVIGIGGGSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTG--SEVTQYS 144 (357)
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcch--hhhCCeE
Confidence 6789999999999987 99999999999999999864 24689999999998763 4444433
Q ss_pred eeecC--Ccccccc-cccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHH
Q 023156 67 GINHR--LGKNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIK 143 (286)
Q Consensus 67 ~i~~~--~~k~~~g-~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~ 143 (286)
.+..+ +.|..+. ....|.++|+||+++.++|++++++|.+|++.|++ |.|+....+ . ..+.+.+...
T Consensus 145 vi~d~~~~~K~~i~~~~~~P~~~i~Dp~l~~~~P~~~~a~~g~Dal~ha~---E~~~s~~~~---~----~~d~~a~~ai 214 (357)
T cd08181 145 VLTDHEEGTKKGFGHDLIFPKLAFLDPKYTLTLPKEVTINTALDALSHAV---EGYLSNKST---P----YSDMLAKEAL 214 (357)
T ss_pred EEEECCCCeeeeccCCccccCEEEEChHHhcCCCHHHHHHHHHHHHHHHH---HHHHcCCCC---H----HHHHHHHHHH
Confidence 44443 2343332 23679999999999999999999999999999998 444432111 1 1222222222
Q ss_pred HHHHhhhhhhccChhhhhhHH------------hhccc----hhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcCC
Q 023156 144 RSCENKAEVVSLDEKESGLRA------------TLNLG----HTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLGW 207 (286)
Q Consensus 144 ~~~~~~~~~v~~d~~~~g~r~------------~l~~G----Ht~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g~ 207 (286)
+.+....+.+.+|+.+...|. +.|.| |.++|++... | +++||+++|+-++..+++.....
T Consensus 215 ~l~~~~l~~~~~~~~~~~ar~~~~~as~laG~a~~~~g~~~~Hal~~~l~~~--~-~~~HG~~~ai~lp~vl~~~~~~~- 290 (357)
T cd08181 215 ELFKECLPKLLENELDEEAREKLMLASTLAGMVIAQTGTTLPHGLGYPLTYE--K-GIPHGLANGIFLPEYLELAKEQI- 290 (357)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhcccchhhHhhcCccccC--C-CCCcHHHHHHHHHHHHHHHhhcC-
Confidence 333333344455554444332 22333 6666666543 4 79999999998887765542210
Q ss_pred CCHH-------HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHH
Q 023156 208 IDDS-------IVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTL 280 (286)
Q Consensus 208 ~~~~-------~~~~i~~~l~~~glp~~l~~~~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~ 280 (286)
.+. ..+.+.+++++++.|..++..++++++ +.+...-.. +.. . .++. ..++++++++++
T Consensus 291 -~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~gv~~~~~-~~~a~~~~~-~~~-------~-~~nP---~~~t~~~i~~il 356 (357)
T cd08181 291 -PEKVFILKLLGFGSLDEFLKSLGLLLKVVIKLSDEEI-EKWAERALS-AKH-------K-ANTP---GEVTEEDIRNIY 356 (357)
T ss_pred -HHHHHHHHHcCcHHHHHHHHHHhHHhCCCCCCCHHHH-HHHHHHHHh-CcC-------c-CCCC---CCCCHHHHHHHh
Confidence 010 012446677777777776544566664 444442211 111 0 1222 467899998886
Q ss_pred H
Q 023156 281 Y 281 (286)
Q Consensus 281 ~ 281 (286)
+
T Consensus 357 ~ 357 (357)
T cd08181 357 K 357 (357)
T ss_pred C
Confidence 4
No 54
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=99.96 E-value=5.7e-28 Score=224.70 Aligned_cols=250 Identities=15% Similarity=0.173 Sum_probs=158.2
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecCC--ccccccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHRL--GKNLIGA 79 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~~--~k~~~g~ 79 (286)
+++.++++.++++++| +||||||||++|+||++|.. .++|++.||||.++ +|.+++...++.+. .|+..+.
T Consensus 65 ~~v~~~~~~~~~~~~d---~iiavGGGs~~D~aK~ia~~--~~~p~i~VPTt~gt--gse~t~~avi~~~~~~~K~~~~~ 137 (345)
T cd08171 65 ENVERLKKNPAVQEAD---MIFAVGGGKAIDTVKVLADK--LGKPVFTFPTIASN--CAAVTAVSVVYNDDGSFKEYYFF 137 (345)
T ss_pred HHHHHHHHHHhhcCCC---EEEEeCCcHHHHHHHHHHHH--cCCCEEEecCcccc--CccccceEEEEcCCCceeecccc
Confidence 5788999999999877 99999999999999999865 48999999999766 46666555554432 3555666
Q ss_pred ccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHh--HHHhhcCCHHHHHHHHHHHHHhhhhhhccCh
Q 023156 80 FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQN--MHKLMARDPRAFAYAIKRSCENKAEVVSLDE 157 (286)
Q Consensus 80 ~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~--~~~~~~~~~~~l~~~i~~~~~~~~~~v~~d~ 157 (286)
+..|.++|+||+++.++|++++++|++|++.|++ |.|+..-.+. ..+.+ .....+...+.+....+.+.+|+
T Consensus 138 ~~~P~~~i~Dp~l~~~~P~~~~~~g~~Dal~ha~---E~y~s~~~~~~~~~~~~---a~~~~~~~~~~l~~~l~~a~~~~ 211 (345)
T cd08171 138 KNPPVHCFIDTEIIAEAPEKYLWAGIGDTLAKYY---EVTFSARGEKLDHTNLL---GVTISRMCSEPLLEYGKKALEDC 211 (345)
T ss_pred cCCCCEEEECHHHHHhCCHHHHHHHHHHHHHHHH---HHHHhccccccchhHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999988 5554321110 00100 11111111111111112222222
Q ss_pred hhhh---hHH------hh-----------ccchhHHHHhHh----ccC-CCCCChHHHHHHHHHHHHHHHHHcCCCCHHH
Q 023156 158 KESG---LRA------TL-----------NLGHTFGHAIET----GFG-YGQWLHGEAVAAGMVMAVDMSYRLGWIDDSI 212 (286)
Q Consensus 158 ~~~g---~r~------~l-----------~~GHt~~Hale~----~~~-~~~~~HG~aVaig~~~~~~l~~~~g~~~~~~ 212 (286)
.+.. .|. ++ .+.|.+.|++.. +.. ....+||+.++++.+++... .+ ..+.
T Consensus 212 ~~~~~~~ar~~m~~a~~~~~G~~~~la~~~~~~~~~Hg~~~al~~lp~~~~~~~hg~~~~~~~~~~~~~---~~--~~~~ 286 (345)
T cd08171 212 RNNKVSYALEQVILAIIVTTGIVSNLVTPDYNSGLAHALFYGLTTLPHIEENHLHGEVVSYGVLVLLLV---DG--QEEE 286 (345)
T ss_pred HcCCCCHHHHHHHHHHHHhhcccccccccCCchHHHHHHHHHhhcCcccccccCccchhHHHHHHHHHH---cC--CHHH
Confidence 1111 111 00 111234444432 211 12358999999888876542 11 3567
Q ss_pred HHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHH
Q 023156 213 VKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 213 ~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~ 282 (286)
++++++|++++|+|+++++. ++.+++-+.....- .+..+ ...| ..++++++++++.+
T Consensus 287 i~~i~~l~~~lglP~~L~~~gv~~~~l~~~~~~a~--~~~~~----~~~p-------~~~t~e~i~~~~~~ 344 (345)
T cd08171 287 LERIYPFNKSIGLPVCLEDLGLTEDDLEKVLEKAL--ATQDL----KHVP-------YPVTKEMIAEAIKD 344 (345)
T ss_pred HHHHHHHHHHcCCCCcHHHcCCCHHHHHHHHHHhc--CcchH----hhCC-------CCCCHHHHHHHHHh
Confidence 99999999999999999876 67777544443321 11111 1112 46889999999875
No 55
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=99.96 E-value=2.9e-27 Score=242.85 Aligned_cols=252 Identities=19% Similarity=0.174 Sum_probs=167.0
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh---------------------------hcCCcEEEeccch
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---------------------------LRGVSFIQIPTTV 54 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~---------------------------~~gip~i~VPTTl 54 (286)
+++.++++.+++.++| +||||||||++|+||++|..+ .+++|+|+||||+
T Consensus 526 ~~v~~~~~~~~~~~~D---~IIaiGGGSviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTa 602 (862)
T PRK13805 526 STVRKGAELMRSFKPD---TIIALGGGSPMDAAKIMWLFYEHPETDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTS 602 (862)
T ss_pred HHHHHHHHHHHhcCCC---EEEEeCCchHHHHHHHHHHHHhCCCCCHHHHHHHhcccccccccccccCCCCcEEEeeCCC
Confidence 6789999999999987 999999999999999998632 3578999999997
Q ss_pred hhccccCcCcceeeecCCc--cccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhh
Q 023156 55 MAQVDSSVGGKTGINHRLG--KNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLM 131 (286)
Q Consensus 55 ~~~~das~g~k~~i~~~~~--k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~ 131 (286)
++ +|.++....+..... |..+ ..+..|..+|+||+++.++|++++++|++|+++|++ |.|+....+ .+
T Consensus 603 gT--GSE~t~~avi~~~~~~~K~~~~~~~~~P~~~ivDp~l~~tlP~~~taa~g~Dal~ha~---Eay~s~~~~---~~- 673 (862)
T PRK13805 603 GT--GSEVTPFAVITDDKTGVKYPLADYELTPDVAIVDPNLVMTMPKSLTADTGIDALTHAL---EAYVSVMAS---DY- 673 (862)
T ss_pred Cc--ccccCCeEEEEecCCCeEEEeeCCCccCCEEEECHHHHccCCHHHHHHHHHHHHHHHH---HHHHccCCC---HH-
Confidence 65 566655444443322 2222 346789999999999999999999999999999998 555432111 11
Q ss_pred cCCHHHHHHHHHHHHHhhhhhhccCh-hhhhhHH------------hhc----cchhHHHHhHhccCCCCCChHHHHHHH
Q 023156 132 ARDPRAFAYAIKRSCENKAEVVSLDE-KESGLRA------------TLN----LGHTFGHAIETGFGYGQWLHGEAVAAG 194 (286)
Q Consensus 132 ~~~~~~l~~~i~~~~~~~~~~v~~d~-~~~g~r~------------~l~----~GHt~~Hale~~~~~~~~~HG~aVaig 194 (286)
++.+.+...+.+....+.+..|+ .+...|. +.| ..|.++|++... | +++||+++|+-
T Consensus 674 ---sd~~a~~ai~li~~~L~~a~~~~~~d~~ar~~m~~As~laG~a~~~~~~g~~Hal~~~lg~~--~-~v~HG~~~ail 747 (862)
T PRK13805 674 ---TDGLALQAIKLVFEYLPRSYKNGAKDPEAREKMHNASTIAGMAFANAFLGICHSMAHKLGAE--F-HIPHGRANAIL 747 (862)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhhcC--c-CCChHHHHHHH
Confidence 22222222233333333333444 3333332 222 348888887764 3 79999999999
Q ss_pred HHHHHHH--------------------------HHHcCCC---CH----HHHHHHHHHHHHcCCCCCCCCC-CCHHHH--
Q 023156 195 MVMAVDM--------------------------SYRLGWI---DD----SIVKRVHNILQQAKLPTAPPDT-MTVEMF-- 238 (286)
Q Consensus 195 ~~~~~~l--------------------------~~~~g~~---~~----~~~~~i~~~l~~~glp~~l~~~-~~~~~~-- 238 (286)
+|..+++ ++.+|.- ++ +.++++.+|++++|+|+++.+. ++++++
T Consensus 748 lP~vl~~n~~~~~~~~~~~~~~~~~~~~k~~~la~~l~~~~~~~~~~a~~~i~~i~~l~~~lglP~~L~~~gv~~~~~~~ 827 (862)
T PRK13805 748 LPHVIRYNATDPPKQAAFPQYEYPRADERYAEIARHLGLPGSTTEEKVESLIKAIEELKAELGIPMSIKEAGVDEADFLA 827 (862)
T ss_pred HHHHHHHhhhccccccccccccccccHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHcCCCCCHHHcCCCHHHHHh
Confidence 9865443 2224431 11 3478899999999999999875 666654
Q ss_pred -HHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHH
Q 023156 239 -KSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 239 -~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~ 283 (286)
++.+...-. .+... .++. ..++.+++++++++.
T Consensus 828 ~l~~~a~~a~-~~~~~--------~~np---~~~~~~~i~~i~~~~ 861 (862)
T PRK13805 828 KLDELAELAF-DDQCT--------GANP---RYPLISELKEILLDA 861 (862)
T ss_pred hHHHHHHHHH-hCccc--------cCCC---CCCCHHHHHHHHHHh
Confidence 455554321 11110 1122 356789999988753
No 56
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=99.95 E-value=4.6e-27 Score=220.32 Aligned_cols=219 Identities=24% Similarity=0.290 Sum_probs=143.2
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcC-----------------CcEEEeccchhhccccCcCc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRG-----------------VSFIQIPTTVMAQVDSSVGG 64 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~g-----------------ip~i~VPTTl~~~~das~g~ 64 (286)
++++++.++++++++| +||||||||++|+||.+|..+... +|++.||||+++. |.+.+
T Consensus 65 ~~v~~~~~~~~~~~~D---~IIaiGGGS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gtG--sE~t~ 139 (366)
T PF00465_consen 65 EDVDEAAEQARKFGAD---CIIAIGGGSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGTG--SEVTP 139 (366)
T ss_dssp HHHHHHHHHHHHTTSS---EEEEEESHHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSSS--GCCSS
T ss_pred HHHHHHHHHHHhcCCC---EEEEcCCCCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcccc--ccccc
Confidence 6789999999999888 999999999999999999776422 8999999998873 55555
Q ss_pred ceeeecCCc--ccccc-cccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHH
Q 023156 65 KTGINHRLG--KNLIG-AFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYA 141 (286)
Q Consensus 65 k~~i~~~~~--k~~~g-~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~ 141 (286)
...+..+.. |..+. ....|..+|+||+++.++|.+++++|..|++.|++ +.|+....+ .+ .+.+..-
T Consensus 140 ~avi~d~~~~~k~~~~~~~~~P~~~i~Dp~l~~~lP~~~~~~~~~dal~hai---E~~~s~~~~---~~----s~~~a~~ 209 (366)
T PF00465_consen 140 YAVIYDEEGGRKLSIRSPKLYPDAAILDPELTATLPPRLTASGGLDALAHAI---EAYLSPKAN---PL----SDALALQ 209 (366)
T ss_dssp EEEEEETTTTEEEEEEEGGGS-SEEEEEGGGGTTS-HHHHHHHHHHHHHHHH---HHHHSTTT----HH----HHHHHHH
T ss_pred cccccccccceeccccCcccCcceeEecHHhhcCCCHHHHhhhHHHHHHHHH---HHHhhcccC---cc----cHHHHHH
Confidence 555554432 32232 23589999999999999999999999999999998 544432111 11 1222111
Q ss_pred HHHHHHhhhhhhccChhhhhhHH------------h----hccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHH---
Q 023156 142 IKRSCENKAEVVSLDEKESGLRA------------T----LNLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMS--- 202 (286)
Q Consensus 142 i~~~~~~~~~~v~~d~~~~g~r~------------~----l~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~--- 202 (286)
..+.+....+.+..|+.+...|. + .+..|.++|++... + +++||+++++.++..+++.
T Consensus 210 ai~li~~~l~~~~~~~~~~~ar~~l~~as~laG~a~~~~~~g~~Hal~~~l~~~--~-~v~HG~~~a~~lp~v~~~~~~~ 286 (366)
T PF00465_consen 210 AIRLIFENLPRAVADPEDLEARENLALASTLAGLAISNAGTGAAHALSHALGAR--Y-GVPHGEAVAILLPHVLRFNAPS 286 (366)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT--HHHHHHHHHHHH--H-TS-HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccccccccccccccccccccccc--e-eecchhhhhcccHHHHHHHHHh
Confidence 11222222222222333322222 1 22348888888764 3 6999999999999876432
Q ss_pred ---------HHcCCC---------CHHHHHHHHHHHHHcCCCCCCCCC-CCHHHH
Q 023156 203 ---------YRLGWI---------DDSIVKRVHNILQQAKLPTAPPDT-MTVEMF 238 (286)
Q Consensus 203 ---------~~~g~~---------~~~~~~~i~~~l~~~glp~~l~~~-~~~~~~ 238 (286)
+.+|.. .++.++++.+|++++|+|+++++. ++++++
T Consensus 287 ~~~~~~~l~~~l~~~~~~~~~~~~a~~~~~~l~~l~~~lglp~~l~~~gi~~~~l 341 (366)
T PF00465_consen 287 APEKLARLAKALGVDTEGGSAEEAADDAIDELRALLRSLGLPTRLSDLGIDEEDL 341 (366)
T ss_dssp CHHHHHHHHHHTTHCTTS-HHHHHHHHHHHHHHHHHHHTT--SSGGGGT-TGGGH
T ss_pred hHHHHHHHHHhcCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCCHHHcCCCHHHH
Confidence 334422 134589999999999999999875 665443
No 57
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=99.95 E-value=7e-28 Score=213.27 Aligned_cols=175 Identities=27% Similarity=0.357 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcceeeecC-Ccccccccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKTGINHR-LGKNLIGAF 80 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~~i~~~-~~k~~~g~~ 80 (286)
+++.++.+.++..++| +|||||||+++|++|++| |.+|+||++|||++|. |+-.++..++..+ +.|...+..
T Consensus 62 ~~~~~~~~~~~~~~~d---~ii~vGgG~i~D~~K~~A--~~~~~p~isVPTa~S~--DG~aS~~Asl~~~~g~k~s~~~a 134 (250)
T PF13685_consen 62 DEVEKLVEALRPKDAD---LIIGVGGGTIIDIAKYAA--FELGIPFISVPTAASH--DGFASPVASLTVDDGFKVSYGPA 134 (250)
T ss_dssp HHHHHHHTTS--TT-----EEEEEESHHHHHHHHHHH--HHHT--EEEEES--SS--GGGTSSEEEEEET-TEEEEE-E-
T ss_pred HHHHHHHHHhcccCCC---EEEEeCCcHHHHHHHHHH--HhcCCCEEEecccccc--ccccCCCeeEEecCCCceeecCC
Confidence 3455666666555555 999999999999999995 6799999999999887 8888888888776 555555434
Q ss_pred cCcceeeeehHhhcCCCHHHHHhhHHHHH-HHHHhcChhHHHHHHHhHHHhhcCCHHHHHHHHHHHHHhhhh--------
Q 023156 81 YQPQCVLVDTDTLNTLPDRELASGLAEVI-KYGLIRDAEFFEWQEQNMHKLMARDPRAFAYAIKRSCENKAE-------- 151 (286)
Q Consensus 81 ~~P~~viiD~~~l~tlP~~~~~~G~~D~l-k~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~-------- 151 (286)
..|..|++|+++++++|.+++++|++|++ |++...||++...+.++. .+...+++.+.+..-.+
T Consensus 135 ~~P~aIiaD~dIi~~AP~~l~~aG~GDli~k~tA~~DW~La~~~~e~~-------~~~~~~~v~~~~~~~~~~~~d~~~i 207 (250)
T PF13685_consen 135 KAPIAIIADTDIIANAPRRLIAAGFGDLISKYTALADWKLAHEYGEPY-------CEYAADMVEEALRNILKDPDDPEAI 207 (250)
T ss_dssp ---SEEEEEHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTTS----------HHHHHHHHHHHH---S-TT-HHHH
T ss_pred CCCeEEEEeHHHHHhCCHHHHHhhHHHHHHhhhhHHHHHHHHHhhhhH-------HHHHHHHHHHHHHHHHcCcCcHHHH
Confidence 78999999999999999999999999999 999999998876432211 11222233333221111
Q ss_pred -hhccChhhhhh---HHhhccchhHHHHhHhccCCCCCChHHHHH
Q 023156 152 -VVSLDEKESGL---RATLNLGHTFGHAIETGFGYGQWLHGEAVA 192 (286)
Q Consensus 152 -~v~~d~~~~g~---r~~l~~GHt~~Hale~~~~~~~~~HG~aVa 192 (286)
.+.+-...+|+ |++++.+|.|+|+||+.. .+.+||++|+
T Consensus 208 ~~L~~~L~~sg~amSRPaSGsEH~~sH~le~~~--~~~lHG~~Vg 250 (250)
T PF13685_consen 208 KALMEALIMSGLAMSRPASGSEHLFSHALEMLA--KPALHGEQVG 250 (250)
T ss_dssp HHHHHHHHHHHHHHSTTT-SHHHHHHHHHHHH---S---HHHHHH
T ss_pred HHHHHHHHHcccccCCCccchhhHHHHHHHhhc--CCCccccccC
Confidence 00000111222 557888899999999986 4789999996
No 58
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=99.95 E-value=2.4e-26 Score=213.47 Aligned_cols=216 Identities=13% Similarity=0.119 Sum_probs=144.5
Q ss_pred hHHHHHHHHHHHc---CCCCCceEEEEcCchHHHHHHHHHHHhh----------------cCCcEEEeccchhhccccCc
Q 023156 2 DTLMKVFDKAIES---RLDRRCTFVALGGGVIGDMCGYAAASYL----------------RGVSFIQIPTTVMAQVDSSV 62 (286)
Q Consensus 2 ~~v~~~~~~~~~~---~~~r~d~iiavGGG~v~D~ak~~A~~~~----------------~gip~i~VPTTl~~~~das~ 62 (286)
++++++.+.++++ ++| +||||||||++|+||++|..+. ..+|+|+||||.++ +|.+
T Consensus 65 ~~v~~~~~~~~~~~~~~~D---~IIaiGGGS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGT--GSE~ 139 (347)
T cd08184 65 DQIDALTAQVKSFDGKLPC---AIVGIGGGSTLDVAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGT--GAEA 139 (347)
T ss_pred HHHHHHHHHHHhhCCCCCC---EEEEeCCcHHHHHHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCcc--cccc
Confidence 5788999999988 776 9999999999999999986542 24789999999877 3555
Q ss_pred CcceeeecCCccccc-ccccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHHhHHHhhcCCHHHHHHH
Q 023156 63 GGKTGINHRLGKNLI-GAFYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQNMHKLMARDPRAFAYA 141 (286)
Q Consensus 63 g~k~~i~~~~~k~~~-g~~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~~~~~~~~~~~~~l~~~ 141 (286)
+....+..++.|..+ .....|..+|+||+++.++|+++++++..|++.|++ |.|+....+. ..+.+...
T Consensus 140 t~~aVit~~~~K~~i~~~~~~P~~aIvDp~l~~s~P~~~ta~tGiDal~Hai---Eay~s~~~~p-------~td~~A~~ 209 (347)
T cd08184 140 SRTAVLMGPERKLGMNSDFTMFDQIILDPELTAGVPRDQYFYTGMDCYIHCI---ESLTGTYRNE-------VSDAYAEK 209 (347)
T ss_pred CCcEEEEeCCceeeeecCCcCCCEEEEChHhhcCCCHHHHHHHHHHHHHHHH---HHHhcCCCCH-------HHHHHHHH
Confidence 554445444444443 345689999999999999999988888889999998 4444321111 12222221
Q ss_pred HHHHHHhh-hhhhccChhh----------hhhHHhh----ccchhHHHHhHhccCCCCCChHHHHHHHHHHHHHHHHHcC
Q 023156 142 IKRSCENK-AEVVSLDEKE----------SGLRATL----NLGHTFGHAIETGFGYGQWLHGEAVAAGMVMAVDMSYRLG 206 (286)
Q Consensus 142 i~~~~~~~-~~~v~~d~~~----------~g~r~~l----~~GHt~~Hale~~~~~~~~~HG~aVaig~~~~~~l~~~~g 206 (286)
..+.+... .+....|... .|+ .+. +..|.++|++... + +++||.++|+.++...++.
T Consensus 210 ai~li~~~~l~~~~~d~~ar~~m~~As~laG~-a~~~~g~g~~Hal~h~L~~~--~-~~~HG~~~av~lp~v~~~~---- 281 (347)
T cd08184 210 ALELCRQVFLSDDMMSEENDDKLMMASYLGGM-SIANSQVGVCHAASYGLSLH--L-GYHHGIANCIAFNVLEEFY---- 281 (347)
T ss_pred HHHHHHHhhhccccCCHHHHHHHHHHHHHHHH-HhCCcccccchhhchHhhcC--C-CCChHHHHHHHHHHHHHHh----
Confidence 22221110 1100012110 111 112 2349999988875 3 7899999999999876663
Q ss_pred CCCHHHHHHHHHHHHH--cCCCCCCCCCCCHHHHHHHHHh
Q 023156 207 WIDDSIVKRVHNILQQ--AKLPTAPPDTMTVEMFKSIMAV 244 (286)
Q Consensus 207 ~~~~~~~~~i~~~l~~--~glp~~l~~~~~~~~~~~~l~~ 244 (286)
++.++++.++++. +|+|.++.+.++++++ +.|..
T Consensus 282 ---~~~~~~~~~~~~~~~~glp~~L~~gv~~~~~-~~~~~ 317 (347)
T cd08184 282 ---PEGVDEFRLMMKKHKIDLPKGICASLTDAQM-DRMVA 317 (347)
T ss_pred ---hhhHHHHHHHHHHcCCCCchHHHcCCCHHHH-HHHHH
Confidence 3456778888777 9999999886777665 44444
No 59
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=99.79 E-value=5e-18 Score=152.50 Aligned_cols=262 Identities=20% Similarity=0.194 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh----------------------cCCcEEEeccchhhccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL----------------------RGVSFIQIPTTVMAQVD 59 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~----------------------~gip~i~VPTTl~~~~d 59 (286)
.++.+.++.+++.++| .+|+|||||++|+||.+|-..- .-+|+|.||||..+.
T Consensus 114 ~s~~~alefak~~~fD---s~vaiGGGSa~DtaKaaaL~Asn~~~eflDyvg~pigk~~~~s~p~lPLiAipTTaGTg-- 188 (465)
T KOG3857|consen 114 GSVTAALEFAKKKNFD---SFVAIGGGSAHDTAKAAALLASNGEGEFLDYVGPPIGKVKQSSKPLLPLIAIPTTAGTG-- 188 (465)
T ss_pred hhHHHHHHHHHhcccc---eEEEEcCcchhhhHHHHHHhhcCCCccchhccCCcccccccccccccceEecccCCCcc--
Confidence 3678899999999888 9999999999999999973211 138999999996552
Q ss_pred cCcCcceeeecCCccccccc---ccCcceeeeehHhhcCCCHHHHHhhHHHHHHHHHhcChhHHHHHHH-hH----H---
Q 023156 60 SSVGGKTGINHRLGKNLIGA---FYQPQCVLVDTDTLNTLPDRELASGLAEVIKYGLIRDAEFFEWQEQ-NM----H--- 128 (286)
Q Consensus 60 as~g~k~~i~~~~~k~~~g~---~~~P~~viiD~~~l~tlP~~~~~~G~~D~lk~~~~~d~~~f~~~~~-~~----~--- 128 (286)
|.+.+.+-++++..|-..|. +..|...++||.-+.++|++.+++...|++.|++ |.|-..... .. .
T Consensus 189 SEtT~~AI~d~e~~k~K~gI~~k~ikP~lav~DPl~~~~~P~~v~a~tGfDvlcHal---Esyts~py~~rsp~psnp~~ 265 (465)
T KOG3857|consen 189 SETTRFAIIDYEELKIKMGIIDKNIKPTLAVNDPLTMLGLPPRVTAATGFDVLCHAL---ESYTSTPYDQRSPRPSNPGV 265 (465)
T ss_pred ccceeeEEecchhhheeeeeecccccceeeecChHHhccCChHHhhhcchHHHHHHH---HHHhcCcccccCCCCCCCcc
Confidence 33444444566555555553 4579999999999999999999999999999999 444321000 00 0
Q ss_pred -Hhh---cCCHHHHHHHHHHHHHhhhhhhccChhhhhhHH------------hhc----cchhHHHHhHhcc------CC
Q 023156 129 -KLM---ARDPRAFAYAIKRSCENKAEVVSLDEKESGLRA------------TLN----LGHTFGHAIETGF------GY 182 (286)
Q Consensus 129 -~~~---~~~~~~l~~~i~~~~~~~~~~v~~d~~~~g~r~------------~l~----~GHt~~Hale~~~------~~ 182 (286)
... +.-+|.+..-..+.+.........||.+...|. +-| +-|.++|.|.... +|
T Consensus 266 rp~yqgsNPIsD~wA~~al~li~kyl~rAv~~p~d~eARt~M~~As~~aG~gFgNAgvhlcHglsypisg~vk~~kakdy 345 (465)
T KOG3857|consen 266 RPLYQGSNPISDAWALKALELINKYLVRAVKDPKDEEARTDMHYASYLAGMGFGNAGVHLCHGLSYPISGQVKSYKAKDY 345 (465)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhccccCcccccceeeccccccCcccccccccc
Confidence 000 111233332222233322333445677766663 112 2288999888731 23
Q ss_pred CC----CChHHHHHHHHHHHHH------------HHHHcCCC----------CHHHHHHHHHHHHHcCCCCCCCCC-CCH
Q 023156 183 GQ----WLHGEAVAAGMVMAVD------------MSYRLGWI----------DDSIVKRVHNILQQAKLPTAPPDT-MTV 235 (286)
Q Consensus 183 ~~----~~HG~aVaig~~~~~~------------l~~~~g~~----------~~~~~~~i~~~l~~~glp~~l~~~-~~~ 235 (286)
.+ ++||.+|++..+.... .++++|-. .+..++++..|++.+|+|..|.+. +..
T Consensus 346 ~~dh~liPHGlsv~v~~pavfeft~~~cP~rhl~aaq~LGa~~~h~~~~e~~~~~l~d~lr~~~~~~~i~~gL~~lG~~~ 425 (465)
T KOG3857|consen 346 YHDHNLIPHGLSVAVLLPAVFEFTAAACPDRHLEAAQRLGAIARHFGASEDAGEELADRLRGLMRDMGIPNGLKELGVKT 425 (465)
T ss_pred ccccccCCcchhhhhhhhhhhhhccccCchhHHHHHHHhhhHhhcccchhccHHHHHHHHHHHHHhcCCCcchHhhCccc
Confidence 34 8999999998775332 23334421 234589999999999999999875 544
Q ss_pred HHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHHH
Q 023156 236 EMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYAF 283 (286)
Q Consensus 236 ~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~~ 283 (286)
++ ++.|.+.- ..+.+ .+-.. | +.-++|++..++++.
T Consensus 426 sD-i~~Lve~a-~~~~~--~~~~a-P-------~~~t~E~v~alfeks 461 (465)
T KOG3857|consen 426 SD-IEALVEHA-MHDAC--HTTNA-P-------RQQTKEQVSALFEKS 461 (465)
T ss_pred cc-hHHHHhcc-ccccc--ccccC-C-------ccccHHHHHHHHHHh
Confidence 44 34444421 11110 00011 1 345788888887754
No 60
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00039 Score=66.22 Aligned_cols=95 Identities=25% Similarity=0.290 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCC----------CCHHHHHHHHHhchhccCCeeEE
Q 023156 186 LHGEAVAAGMVMAVDMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDT----------MTVEMFKSIMAVDKKVADGLLRL 255 (286)
Q Consensus 186 ~HG~aVaig~~~~~~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~----------~~~~~~~~~l~~dkk~~~~~~~~ 255 (286)
+|||+||+||.....+++.+|++++..+.++...+.++++|++.++. ...+...+.+..|+++.+-..|.
T Consensus 1 LhgE~vaagmV~~aeLSr~lGiLsPtsVarLsKiLvr~~lp~Spdsss~k~~s~~r~~pfsk~~~~~s~d~~n~GS~~r~ 80 (595)
T KOG0692|consen 1 LHGECVAAGMVKEAELSRYLGILSPTSVARLSKILVRYSLPFSPDSSSPKLRSVPRKVPFSKSWGLKSSDKKNVGSEKRP 80 (595)
T ss_pred CcchhhhhccccHHHHHHhhCcCCHHHHhhhhHHHHhcCCCCCCCccchhhhcccccCchHHHHhhhhhhhhcccccccc
Confidence 59999999999999999999999999999999999999999987641 23466788999999988888888
Q ss_pred EeecCCCcceEEcC--CCCHHHHHHHHH
Q 023156 256 ILLKGPLGNCVFTG--DYDRKALDDTLY 281 (286)
Q Consensus 256 ~l~~~~iG~~~~~~--~v~~~~~~~~~~ 281 (286)
+..+. ++++.... -+.++++++++.
T Consensus 81 V~vea-~~~taeKas~iV~~pdir~i~~ 107 (595)
T KOG0692|consen 81 VKVEA-SVSTAEKASEIVLQPDIREISG 107 (595)
T ss_pred EEEee-cchhhhhcchhhcChhHHHhhc
Confidence 87775 66654321 134555555543
No 61
>PRK03202 6-phosphofructokinase; Provisional
Probab=90.50 E-value=0.46 Score=43.96 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhh
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMA 56 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~ 56 (286)
+...++++.++++++| .+|.+||--.++.+...+ ..++|++.||-|..+
T Consensus 80 ~~~~~~~~~l~~~~Id---~Li~IGGd~s~~~a~~L~---e~~i~vigiPkTIDN 128 (320)
T PRK03202 80 EGRAKAIENLKKLGID---ALVVIGGDGSYMGAKRLT---EHGIPVIGLPGTIDN 128 (320)
T ss_pred HHHHHHHHHHHHcCCC---EEEEeCChHHHHHHHHHH---hcCCcEEEecccccC
Confidence 3578999999999998 999999999999888775 359999999999864
No 62
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=90.42 E-value=0.45 Score=44.41 Aligned_cols=64 Identities=19% Similarity=0.300 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh---hcCCcEEEeccchhh---ccccCcCcceeee
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTVMA---QVDSSVGGKTGIN 69 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~---~~gip~i~VPTTl~~---~~das~g~k~~i~ 69 (286)
...++++.++++++| .++.+||--.++.|..++-.+ ..++|++.||-|..+ .+|-|+|--|+++
T Consensus 80 ~~~~~~~~l~~~~I~---~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~ 149 (338)
T cd00363 80 GRAKAAENLKKHGID---ALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALK 149 (338)
T ss_pred HHHHHHHHHHHhCCC---EEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHH
Confidence 467899999999998 999999999999998876432 138999999999864 3445555545444
No 63
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=88.84 E-value=0.76 Score=42.48 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhh
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMA 56 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~ 56 (286)
...++++.++++++| .++.+||--.++.|..++- .|+|++-||-|..+
T Consensus 80 ~~~~~~~~l~~~~Id---~Li~IGGdgs~~~a~~L~e---~~i~vigiPkTIDN 127 (317)
T cd00763 80 GQAKAIEQLKKHGID---ALVVIGGDGSYMGAMRLTE---HGFPCVGLPGTIDN 127 (317)
T ss_pred HHHHHHHHHHHcCCC---EEEEECCchHHHHHHHHHH---cCCCEEEecccccC
Confidence 467899999999999 9999999999988877643 38999999999765
No 64
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=88.72 E-value=0.83 Score=41.91 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhh
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMA 56 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~ 56 (286)
..+++++.++++++| .+|.+||--.++.|..++-. .++|++-||-|..+
T Consensus 79 ~~~~~~~~l~~~~Id---~Li~IGGdgs~~~a~~L~e~--~~i~vigiPkTIDN 127 (301)
T TIGR02482 79 GRQKAVENLKKLGIE---GLVVIGGDGSYTGAQKLYEE--GGIPVIGLPGTIDN 127 (301)
T ss_pred HHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHh--hCCCEEeecccccC
Confidence 467899999999999 99999999999888777432 58999999999764
No 65
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=88.54 E-value=0.44 Score=43.29 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=41.3
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhh
Q 023156 4 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMA 56 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~ 56 (286)
..++++.++++++| .+|.+||--.++.|..++- ..++|++.||-|..+
T Consensus 81 ~~~~~~~l~~~~Id---~Li~IGG~gs~~~a~~L~~--~~~i~vigiPkTIDN 128 (282)
T PF00365_consen 81 RKKIVENLKKLGID---ALIVIGGDGSMKGAHKLSE--EFGIPVIGIPKTIDN 128 (282)
T ss_dssp HHHHHHHHHHTTES---EEEEEESHHHHHHHHHHHH--HHHSEEEEEEEETTS
T ss_pred hhhHHHHHHHhCCC---EEEEecCCCHHHHHHHHHh--cCceEEEEEeccccC
Confidence 45789999999998 9999999999999998853 346999999999754
No 66
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=88.22 E-value=0.92 Score=42.06 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhh---ccccCcCcceeee
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMA---QVDSSVGGKTGIN 69 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~---~~das~g~k~~i~ 69 (286)
..+++++.+++.++| .+|.+||--.++.|..++ ..|+|++.||-|..+ .+|-++|--|+++
T Consensus 82 ~~~~~~~~l~~~~Id---~LivIGGdgS~~~a~~L~---~~gi~vigiPkTIDNDl~gtd~tiGfdTA~~ 145 (324)
T TIGR02483 82 GDDKIVANLKELGLD---ALIAIGGDGTLGIARRLA---DKGLPVVGVPKTIDNDLEATDYTFGFDTAVE 145 (324)
T ss_pred HHHHHHHHHHHcCCC---EEEEECCchHHHHHHHHH---hcCCCEEeeccccCCCCcCCccCcCHHHHHH
Confidence 578999999999998 999999999999887774 358999999999864 2233444444433
No 67
>PRK14071 6-phosphofructokinase; Provisional
Probab=87.19 E-value=1.2 Score=41.97 Aligned_cols=62 Identities=23% Similarity=0.342 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhh---ccccCcCcceeee
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMA---QVDSSVGGKTGIN 69 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~---~~das~g~k~~i~ 69 (286)
..+++++.++++++| .+|.+||-=..+.++..+- ..++|+|.||-|..+ .+|-++|--|+++
T Consensus 95 ~~~~~~~~l~~~~Id---~Li~IGGdgS~~~a~~L~~--~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~ 159 (360)
T PRK14071 95 RSQEIIDGYHSLGLD---ALIGIGGDGSLAILRRLAQ--QGGINLVGIPKTIDNDVGATEVSIGFDTAVN 159 (360)
T ss_pred HHHHHHHHHHHcCCC---EEEEECChhHHHHHHHHHH--hcCCcEEEecccccCCCcCcccCcChhHHHH
Confidence 457899999999999 9999999999998877742 249999999999864 2244454444443
No 68
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=85.24 E-value=3.1 Score=34.36 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
+.+.++.+.+.+.+++ +||++.|++ .-+.+.+|+ ..-.|+|.||+.
T Consensus 40 ~~~~~~~~~a~~~g~~---viIa~AG~a-a~Lpgvva~--~t~~PVIgvP~~ 85 (156)
T TIGR01162 40 ELMLEYAKEAEERGIK---VIIAGAGGA-AHLPGMVAA--LTPLPVIGVPVP 85 (156)
T ss_pred HHHHHHHHHHHHCCCe---EEEEeCCcc-chhHHHHHh--ccCCCEEEecCC
Confidence 3456667777777776 899888874 568888875 468999999986
No 69
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=85.01 E-value=1.6 Score=41.60 Aligned_cols=65 Identities=17% Similarity=0.272 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh-c--CCcEEEeccchhh---ccccCcCcceeeec
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-R--GVSFIQIPTTVMA---QVDSSVGGKTGINH 70 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~-~--gip~i~VPTTl~~---~~das~g~k~~i~~ 70 (286)
...++++.++++++| .++.+||-=..+.|..++.... . ++|++-||-|.-+ .+|-++|--|++++
T Consensus 100 ~~~~~~~~L~~~~Id---~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~~ 170 (403)
T PRK06555 100 PLKVAAERLAADGVD---ILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAEQ 170 (403)
T ss_pred HHHHHHHHHHHcCCC---EEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHHH
Confidence 367899999999999 9999999988888877753221 2 7999999999864 23444554444443
No 70
>PRK14072 6-phosphofructokinase; Provisional
Probab=84.51 E-value=1.9 Score=41.39 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh-hcC--CcEEEeccchhh
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LRG--VSFIQIPTTVMA 56 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~-~~g--ip~i~VPTTl~~ 56 (286)
...++++.++++++| .+|.|||-=.++.|..++-.. ..| +|+|-||=|.-+
T Consensus 91 ~~~~~~~~l~~~~Id---~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDN 144 (416)
T PRK14072 91 EYERLLEVFKAHDIG---YFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDN 144 (416)
T ss_pred HHHHHHHHHHHcCCC---EEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccC
Confidence 578999999999999 999999999999998776321 135 999999999753
No 71
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=84.06 E-value=1.9 Score=42.98 Aligned_cols=105 Identities=19% Similarity=0.288 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh---hcCCcEEEeccchhh-----ccccCcCcceeeecC--
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTVMA-----QVDSSVGGKTGINHR-- 71 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~---~~gip~i~VPTTl~~-----~~das~g~k~~i~~~-- 71 (286)
+...++++.+++.++| .+|.+||--.++.|..+|-.+ ..++++|.||-|+.+ .+|-|+|--|++++-
T Consensus 151 e~~~~i~~~l~~~~Id---~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~~~~ 227 (555)
T PRK07085 151 EQKEACLETVKKLKLD---GLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKTYSE 227 (555)
T ss_pred HHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHHHHH
Confidence 3568899999999999 999999999998888876422 248999999999875 445566655544320
Q ss_pred ----------Cc-cc-----ccccc-----------cCcceeeeehHhhc-CCCHHHHHhhHHHHH
Q 023156 72 ----------LG-KN-----LIGAF-----------YQPQCVLVDTDTLN-TLPDRELASGLAEVI 109 (286)
Q Consensus 72 ----------~~-k~-----~~g~~-----------~~P~~viiD~~~l~-tlP~~~~~~G~~D~l 109 (286)
.. |. ..|.. ..|..+++--++.. ..+...+..-+.|.+
T Consensus 228 ~I~~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i 293 (555)
T PRK07085 228 MIGNISRDALSAKKYWHFIKLMGRSASHIALECALQTHPNICLISEEVAEKKMSLQDIVHYIASVI 293 (555)
T ss_pred HHHHHHHHHHhcCCcEEEEEECCCChHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHH
Confidence 11 11 11211 24778777655433 455556666677766
No 72
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=83.58 E-value=1.8 Score=43.45 Aligned_cols=106 Identities=17% Similarity=0.261 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh---hcCCcEEEeccchhh-----ccccCcCcceeeec---
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---LRGVSFIQIPTTVMA-----QVDSSVGGKTGINH--- 70 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~---~~gip~i~VPTTl~~-----~~das~g~k~~i~~--- 70 (286)
+..+++++.+++.++| .+|.|||--.++.|..+|-.+ ..++++|-||-|+.+ .+|-+.|--|++++
T Consensus 160 e~~~~i~e~l~~l~Id---~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFdTA~k~~ae 236 (610)
T PLN03028 160 EQVNAALAACEALKLD---GLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKVNSQ 236 (610)
T ss_pred HHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCHHHHHHHHHH
Confidence 3568899999999998 999999999999888876432 138999999999865 34556655454332
Q ss_pred ---------CCc-cc-----ccccc-----------cCcceeeeehHhhc-CCCHHHHHhhHHHHHH
Q 023156 71 ---------RLG-KN-----LIGAF-----------YQPQCVLVDTDTLN-TLPDRELASGLAEVIK 110 (286)
Q Consensus 71 ---------~~~-k~-----~~g~~-----------~~P~~viiD~~~l~-tlP~~~~~~G~~D~lk 110 (286)
... |. ..|.. ..|..+++=+++-. .++...+...+.|.++
T Consensus 237 ~I~ni~~dA~S~~~~~~~VevMGR~aG~LAl~~aLat~pniilI~EE~~~~~~tL~~iv~~i~~~I~ 303 (610)
T PLN03028 237 LISNVCTDALSAEKYYYFIRLMGRKASHVALECALQSHPNMVILGEEVAASKLTLFDITKQICDAVQ 303 (610)
T ss_pred HHHHHHHHHHhhCCeEEEEEeCCcchHHHHHHHHHhcCCCEEEecCcccccccccchHHHHHHHHHH
Confidence 011 11 11211 25889988887733 4444555666777773
No 73
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=82.76 E-value=2.3 Score=42.20 Aligned_cols=105 Identities=21% Similarity=0.333 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh-c--CCcEEEeccchhh-----ccccCcCcceeeecC--
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-R--GVSFIQIPTTVMA-----QVDSSVGGKTGINHR-- 71 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~-~--gip~i~VPTTl~~-----~~das~g~k~~i~~~-- 71 (286)
+...++++.+++.++| .+|-+||--.++.|..+|--+. + ++++|.||-|+.+ .+|-|+|--|++++-
T Consensus 148 e~~~~~~~~l~~~~Id---~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~~~~ 224 (539)
T TIGR02477 148 EQFAKALTTAKKLKLD---GLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKIYSE 224 (539)
T ss_pred HHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHH
Confidence 3567899999999999 9999999999988887764222 3 4999999999864 345566554543320
Q ss_pred ----------Cc-cc-----ccccc-----------cCcceeeeehHhh-cCCCHHHHHhhHHHHH
Q 023156 72 ----------LG-KN-----LIGAF-----------YQPQCVLVDTDTL-NTLPDRELASGLAEVI 109 (286)
Q Consensus 72 ----------~~-k~-----~~g~~-----------~~P~~viiD~~~l-~tlP~~~~~~G~~D~l 109 (286)
.. +. ..|.. ..|..+++--+.. .....+.+..-+.|.+
T Consensus 225 ~I~~i~~Da~s~~~~~~~VevMGR~aG~LAl~~aLat~~~iilIpE~~~~~~~~L~~i~~~i~~~i 290 (539)
T TIGR02477 225 LIGNICRDALSAKKYWHFIRLMGRSASHIALECALQTHPNVCIIGEEVAAKKMTLSQLTDYIADVI 290 (539)
T ss_pred HHHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHhcCCCEEEecCccccccCCHHHHHHHHHHHH
Confidence 01 11 11211 2478887765543 2455556677777777
No 74
>PLN02884 6-phosphofructokinase
Probab=81.77 E-value=2.6 Score=40.35 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh-hcC--CcEEEeccchhh
Q 023156 4 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LRG--VSFIQIPTTVMA 56 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~-~~g--ip~i~VPTTl~~ 56 (286)
.+++++.+++++++ .++.|||-=.++.|..++-.+ .+| +|+|-||=|..+
T Consensus 132 ~~~i~~~L~~~~Id---~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDN 184 (411)
T PLN02884 132 TSDIVDSIEARGIN---MLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDN 184 (411)
T ss_pred HHHHHHHHHHcCCC---EEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccC
Confidence 57899999999999 999999999999988875422 245 999999999764
No 75
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=79.28 E-value=4 Score=39.68 Aligned_cols=64 Identities=22% Similarity=0.264 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh-hcC--CcEEEeccchhh---ccccCcCcceeee
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LRG--VSFIQIPTTVMA---QVDSSVGGKTGIN 69 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~-~~g--ip~i~VPTTl~~---~~das~g~k~~i~ 69 (286)
...++++.+.+.+++ .++.|||-=+++.|..++-.. ++| ++++-||=|..+ .+|-|+|-.|+++
T Consensus 164 ~~~~iv~~L~~~~I~---~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~ 233 (459)
T PTZ00286 164 DPKVMVDTLIRHGIN---ILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVE 233 (459)
T ss_pred hHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHH
Confidence 367899999999999 999999999998887775432 245 999999999864 3345555555543
No 76
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=79.02 E-value=5.4 Score=39.68 Aligned_cols=105 Identities=19% Similarity=0.318 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh-cC--CcEEEeccchhh-----ccccCcCcceeeecC---
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-RG--VSFIQIPTTVMA-----QVDSSVGGKTGINHR--- 71 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~-~g--ip~i~VPTTl~~-----~~das~g~k~~i~~~--- 71 (286)
..+++.+.+++.+++ .+|-+||--.++.|..++-.+. +| +++|-||-|+.+ .+|.|.|--|++++-
T Consensus 154 ~~~~i~~~l~~~~Id---~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~~a~~ 230 (550)
T cd00765 154 QFKQAEETAKKLDLD---ALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKIYSEL 230 (550)
T ss_pred HHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 567899999999998 9999999999998888764322 45 899999999864 234455544443320
Q ss_pred ---------Cc-cc-----ccccc-----------cCcceeeeehHhh-cCCCHHHHHhhHHHHHH
Q 023156 72 ---------LG-KN-----LIGAF-----------YQPQCVLVDTDTL-NTLPDRELASGLAEVIK 110 (286)
Q Consensus 72 ---------~~-k~-----~~g~~-----------~~P~~viiD~~~l-~tlP~~~~~~G~~D~lk 110 (286)
.. +. ..|.. ..|..+++--+.. .......+..-++|.++
T Consensus 231 I~ni~~Da~s~~~~~~~VEvMGR~aG~LAl~~aLat~p~lilIpE~~~~~~~~L~~v~~~I~~~i~ 296 (550)
T cd00765 231 IGNVMRDARSTGKYWHFVKLMGRSASHIALECALKTHPNICIISEEVSAQKQTLKNITDYMVDVIC 296 (550)
T ss_pred HHHHHHHHHHcCCcEEEEEeCCCchHHHHHHHHHhcCCCEEEecCcccccccCHHHHHHHHHHHHH
Confidence 01 11 11211 2488888765544 35566677777778773
No 77
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=77.12 E-value=4.6 Score=41.77 Aligned_cols=66 Identities=21% Similarity=0.214 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHH---hh-cCCcEEEeccchhh---ccccCcCcceeeec
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---YL-RGVSFIQIPTTVMA---QVDSSVGGKTGINH 70 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~---~~-~gip~i~VPTTl~~---~~das~g~k~~i~~ 70 (286)
+...++.+.++++++| .+|.|||-=..+.+..++.. |. .++|++.||-|..+ .+|-|+|.-|++|.
T Consensus 465 ~~~~~i~~~l~~~~Id---~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln~ 537 (762)
T cd00764 465 KDLETIAYNFQKYGID---GLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALNA 537 (762)
T ss_pred HHHHHHHHHHHHcCCC---EEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHHH
Confidence 3577899999999998 99999999888888766532 22 58999999999875 23445555555553
No 78
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=76.99 E-value=6.6 Score=39.23 Aligned_cols=105 Identities=21% Similarity=0.328 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh-cC--CcEEEeccchhhc---cc--cCcCcceeeec---
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-RG--VSFIQIPTTVMAQ---VD--SSVGGKTGINH--- 70 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~-~g--ip~i~VPTTl~~~---~d--as~g~k~~i~~--- 70 (286)
+...++++.+++.++| .+|.+||--.++.|-.+|--+. .| +++|-||-|.-+= .| .++|--|++++
T Consensus 177 e~~~~~~~~l~~l~Id---~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~~a~ 253 (568)
T PLN02251 177 EQFKQAEETATKLDLD---GLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKIYSE 253 (568)
T ss_pred HHHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHHHHH
Confidence 3578899999999998 9999999999988887764222 45 9999999998541 12 23333333221
Q ss_pred ---------C-Cccc-----ccccc-----------cCcceeeeehHhhc-CCCHHHHHhhHHHHH
Q 023156 71 ---------R-LGKN-----LIGAF-----------YQPQCVLVDTDTLN-TLPDRELASGLAEVI 109 (286)
Q Consensus 71 ---------~-~~k~-----~~g~~-----------~~P~~viiD~~~l~-tlP~~~~~~G~~D~l 109 (286)
. ..|. ..|.. ..|..+++--++.. ......+..-++|.+
T Consensus 254 ~I~ni~~da~S~~k~~~~VevMGR~aG~LAL~~aLat~pniilIpEe~~~~~~~L~~I~~~I~~~I 319 (568)
T PLN02251 254 MIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEVAAKKLTLKNVTDYIVDVI 319 (568)
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCchHHHHHHHHHhhCCCEEEecCccccccCCHHHHHHHHHHHH
Confidence 0 0111 11211 25888888666544 566777778888887
No 79
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=76.89 E-value=4.8 Score=38.97 Aligned_cols=64 Identities=22% Similarity=0.291 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh-hcC--CcEEEeccchhh---ccccCcCcceeee
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LRG--VSFIQIPTTVMA---QVDSSVGGKTGIN 69 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~-~~g--ip~i~VPTTl~~---~~das~g~k~~i~ 69 (286)
...++++.+.+.+++ .++.|||-=.++.|..++-.. ++| +++|.||=|..+ .+|-|+|-.|+++
T Consensus 160 ~~~~iv~~L~~~~I~---~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~ 229 (443)
T PRK06830 160 DPEEIVDTLERMNIN---ILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVE 229 (443)
T ss_pred hHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHH
Confidence 467899999999999 999999999999887775322 244 999999999764 2234444444433
No 80
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=76.11 E-value=4.7 Score=43.77 Aligned_cols=62 Identities=5% Similarity=0.069 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh--------cCCcEEEeccchhh-----ccccCcCcceee
Q 023156 4 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL--------RGVSFIQIPTTVMA-----QVDSSVGGKTGI 68 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~--------~gip~i~VPTTl~~-----~~das~g~k~~i 68 (286)
.+.+++.+.+.++| .+|.|||--..-.|...|-.+. .|+|+|.||-|+-+ .+|.++|--|++
T Consensus 789 ~~~v~~~L~~~~Id---~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~ 863 (1328)
T PTZ00468 789 NDFLSQLLSFFNMR---AIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVT 863 (1328)
T ss_pred HHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHH
Confidence 46788999999998 9999999777666666654322 48999999999864 245555554443
No 81
>PTZ00287 6-phosphofructokinase; Provisional
Probab=75.24 E-value=5.3 Score=43.73 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh-cCCc--EEEeccchhh-----ccccCcCcceeee
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-RGVS--FIQIPTTVMA-----QVDSSVGGKTGIN 69 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~-~gip--~i~VPTTl~~-----~~das~g~k~~i~ 69 (286)
+...++.+.+++.++| .+|.|||--..+.|..++..+. .|+| +|.||-|..+ .+|-|.|--|+++
T Consensus 258 e~~~ki~e~lkkl~Id---~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n 330 (1419)
T PTZ00287 258 DDLIAIENIVAKLKLN---GLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATK 330 (1419)
T ss_pred HHHHHHHHHHHHcCCC---EEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHH
Confidence 3578899999999998 9999999999999888764332 6788 6999999864 3456666555543
No 82
>PRK11914 diacylglycerol kinase; Reviewed
Probab=72.68 E-value=8.8 Score=34.93 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 4 LMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
..++.+.+.+.+.| .||++|| |++..++..++ ..++|+..||.-
T Consensus 53 ~~~~a~~~~~~~~d---~vvv~GGDGTi~evv~~l~---~~~~~lgiiP~G 97 (306)
T PRK11914 53 ARHLVAAALAKGTD---ALVVVGGDGVISNALQVLA---GTDIPLGIIPAG 97 (306)
T ss_pred HHHHHHHHHhcCCC---EEEEECCchHHHHHhHHhc---cCCCcEEEEeCC
Confidence 45566666666665 8999988 88888876653 467999999954
No 83
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=72.22 E-value=4.1 Score=36.89 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=27.9
Q ss_pred HHcCCCCCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 12 IESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 12 ~~~~~~r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
.+.++| +||.+|| |+..++++... ..++|++-|+|.
T Consensus 73 ~~~~~D---~ii~lGGDGT~L~~~~~~~---~~~~Pilgin~G 109 (285)
T PF01513_consen 73 LEEGVD---LIIVLGGDGTFLRAARLFG---DYDIPILGINTG 109 (285)
T ss_dssp HCCCSS---EEEEEESHHHHHHHHHHCT---TST-EEEEEESS
T ss_pred cccCCC---EEEEECCCHHHHHHHHHhc---cCCCcEEeecCC
Confidence 445555 9999999 99999999873 268999999863
No 84
>PLN02564 6-phosphofructokinase
Probab=70.87 E-value=8.5 Score=37.66 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHH-hhcCCc--EEEeccchhh---ccccCcCcceeee
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS-YLRGVS--FIQIPTTVMA---QVDSSVGGKTGIN 69 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~-~~~gip--~i~VPTTl~~---~~das~g~k~~i~ 69 (286)
...++++.+.+.+++ .++.|||-=.++.|..++-. -++|+| ++-||=|.-+ .+|-|+|--|+++
T Consensus 164 ~~~~iv~~L~~~~Id---~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~ 233 (484)
T PLN02564 164 DTSKIVDSIQDRGIN---QVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE 233 (484)
T ss_pred hHHHHHHHHHHhCCC---EEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHH
Confidence 357899999999999 99999999888888777532 235766 9999999864 3344555545443
No 85
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.43 E-value=12 Score=33.50 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCC--CCCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023156 3 TLMKVFDKAIESRL--DRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 3 ~v~~~~~~~~~~~~--~r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
...++-+.+...+. +..|+||++|| |+++-++.... ..++|++-|-+
T Consensus 16 ~~~~l~~~~~~~~~~~~~~D~vi~iGGDGT~L~a~~~~~---~~~iPilGIN~ 65 (259)
T PRK00561 16 VLPKLKKVLKKKLAVEDGADYLFVLGGDGFFVSTAANYN---CAGCKVVGINT 65 (259)
T ss_pred HHHHHHHHHhhCCCccCCCCEEEEECCcHHHHHHHHHhc---CCCCcEEEEec
Confidence 34556666666666 55679999998 88887776652 46788776654
No 86
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=69.99 E-value=8.1 Score=39.95 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHH---h-hcCCcEEEeccchhh
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS---Y-LRGVSFIQIPTTVMA 56 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~---~-~~gip~i~VPTTl~~ 56 (286)
...++.+.++++++| .+|.+||--..+.|..++-. | ..++|++.||-|..+
T Consensus 466 ~~~~i~~~l~~~~Id---~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDN 520 (745)
T TIGR02478 466 DLGMIAYYFQKHKID---GLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISN 520 (745)
T ss_pred HHHHHHHHHHHcCCC---EEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccC
Confidence 578899999999999 99999999888888776532 1 147999999999864
No 87
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=69.50 E-value=6 Score=32.48 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 5 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 5 ~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
+++.+.+.+..-+..+++|++-|+ ..-+.+.+|+. ...|+|.||+.
T Consensus 42 ~~l~~~~~~~~~~~~~viIa~AG~-~a~Lpgvva~~--t~~PVIgvP~~ 87 (150)
T PF00731_consen 42 ERLLEFVKEYEARGADVIIAVAGM-SAALPGVVASL--TTLPVIGVPVS 87 (150)
T ss_dssp HHHHHHHHHTTTTTESEEEEEEES-S--HHHHHHHH--SSS-EEEEEE-
T ss_pred HHHHHHHHHhccCCCEEEEEECCC-cccchhhheec--cCCCEEEeecC
Confidence 344455554433233488888887 56789999764 68999999977
No 88
>COG2359 SpoVS Stage V sporulation protein SpoVS [Function unknown]
Probab=68.37 E-value=21 Score=25.70 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHH--h--hcCCcEEEeccc
Q 023156 5 MKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS--Y--LRGVSFIQIPTT 53 (286)
Q Consensus 5 ~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~--~--~~gip~i~VPTT 53 (286)
..+...+++.|-- -|=|+|.|.+....|.+|.+ | -.|+.+++||.-
T Consensus 17 GAlAgvlr~~g~a---EiQAiGagAvNQaVKAiAiaRgflapsGidL~~vPaF 66 (87)
T COG2359 17 GALAGVLRERGKA---EIQAIGAGAVNQAVKAIAIARGFLAPSGIDLVCVPAF 66 (87)
T ss_pred HHHHHHHHhcCce---eeeeechHHHHHHHHHHHHHhhccCccCCcEEEeeee
Confidence 3455566777654 68899999999999999865 2 258999999964
No 89
>PTZ00287 6-phosphofructokinase; Provisional
Probab=67.36 E-value=10 Score=41.54 Aligned_cols=106 Identities=18% Similarity=0.257 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh-hcCCc--EEEeccchhhc-----cccCcCcceeeecC--
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY-LRGVS--FIQIPTTVMAQ-----VDSSVGGKTGINHR-- 71 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~-~~gip--~i~VPTTl~~~-----~das~g~k~~i~~~-- 71 (286)
+...++++.+++.++| .+|.|||--....|..+|-.+ ..|+| +|.||-|+-+= +|-++|--|+++.-
T Consensus 915 e~~~ka~~~lk~l~ID---~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~~se 991 (1419)
T PTZ00287 915 ENRNKVCETVTNLQLN---GLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKVYAS 991 (1419)
T ss_pred HHHHHHHHHHHHhCCC---EEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHHHHH
Confidence 3578899999999999 999999987777776665322 26888 99999997642 34455544443320
Q ss_pred -----------Ccc-----cccccc-----------cCcceeeeehHhhc-CCCHHHHHhhHHHHHH
Q 023156 72 -----------LGK-----NLIGAF-----------YQPQCVLVDTDTLN-TLPDRELASGLAEVIK 110 (286)
Q Consensus 72 -----------~~k-----~~~g~~-----------~~P~~viiD~~~l~-tlP~~~~~~G~~D~lk 110 (286)
..+ ...|.. ..|..++|--++.. ..+..++..-++|.++
T Consensus 992 aI~nL~~dA~S~~ry~~fVEVMGR~aGhLALe~aLatgAniiLIPEe~~~~~~tL~~Iid~I~~~I~ 1058 (1419)
T PTZ00287 992 LIGNVLTDAVSMPKYWHFIRLMGRSPSHEVLECALQTHPNMVIISEEYGAADKTLWRVVQDIADVVC 1058 (1419)
T ss_pred HHHHHHHHHHhcCCcEEEEEECCCchHHHHHHHHHhcCCCEEEecCcccccccchhHHHHHHHHHHH
Confidence 111 011211 25888888666543 5666777888888874
No 90
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.98 E-value=15 Score=33.00 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCCC----CCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023156 3 TLMKVFDKAIESRLD----RRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~----r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
.+.++.+.+.+.|++ +.|++|++|| |+.+-+++..+. ...++|++-|.+
T Consensus 16 ~~~~l~~~l~~~g~~~~~~~~Dlvi~iGGDGT~L~a~~~~~~-~~~~iPilGIN~ 69 (265)
T PRK04885 16 VASKLKKYLKDFGFILDEKNPDIVISVGGDGTLLSAFHRYEN-QLDKVRFVGVHT 69 (265)
T ss_pred HHHHHHHHHHHcCCccCCcCCCEEEEECCcHHHHHHHHHhcc-cCCCCeEEEEeC
Confidence 355666777776653 4689999998 899988887632 125788776664
No 91
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=65.77 E-value=10 Score=41.24 Aligned_cols=104 Identities=14% Similarity=0.239 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh-cC--CcEEEeccchhh-----ccccCcCcceeeecC---
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-RG--VSFIQIPTTVMA-----QVDSSVGGKTGINHR--- 71 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~-~g--ip~i~VPTTl~~-----~~das~g~k~~i~~~--- 71 (286)
...++.+.+++.++| .+|.|||--.++.|..++-.+. .| +++|-||-|+-+ .+|-++|--|++++-
T Consensus 184 ~~~~~le~lkkl~Id---~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~iae~ 260 (1328)
T PTZ00468 184 QMRASLEICEKLKLH---GLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKTYSEQ 260 (1328)
T ss_pred HHHHHHHHHHHhCCC---EEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHHHHHH
Confidence 467889999999998 9999999999988877764322 45 999999999864 235566554543320
Q ss_pred ---------Cccc------cccc-----------ccCcceeeeehHhhc-CCCHHHHHhhHHHHH
Q 023156 72 ---------LGKN------LIGA-----------FYQPQCVLVDTDTLN-TLPDRELASGLAEVI 109 (286)
Q Consensus 72 ---------~~k~------~~g~-----------~~~P~~viiD~~~l~-tlP~~~~~~G~~D~l 109 (286)
...+ ..|. ...|..+++--++.. ....+.+..-+++.+
T Consensus 261 I~nl~~~A~S~~~rv~~VEVMGR~AGhLAL~~ALAtganiiLIPEe~~~k~~tL~dIvd~Iv~~I 325 (1328)
T PTZ00468 261 IGSIMDAIKTEGYGYYFVRLMGRSASHITLECGLQTRANMILIGEEIKEENRSLMSIVDEIVEMI 325 (1328)
T ss_pred HHHHHHHhhhcCCeEEEEEeCCcchHHHHHHHHHhcCCCEEEecCcCccchhhhhHHHHHHHHHH
Confidence 0010 1121 124788877655443 455556666677766
No 92
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=65.09 E-value=11 Score=31.12 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
+.+.+..+...+.|+. +|||.-|| .-.+-|++|+ +.-+|++-||--
T Consensus 44 e~m~~ya~~a~~~g~~---viIAgAGg-AAHLPGmvAa--~T~lPViGVPv~ 89 (162)
T COG0041 44 EKMFEYAEEAEERGVK---VIIAGAGG-AAHLPGMVAA--KTPLPVIGVPVQ 89 (162)
T ss_pred HHHHHHHHHHHHCCCe---EEEecCcc-hhhcchhhhh--cCCCCeEeccCc
Confidence 3466777888888888 99998888 6789999976 478999999964
No 93
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=65.01 E-value=26 Score=31.67 Aligned_cols=72 Identities=28% Similarity=0.338 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHcCCCCCceE-EEEcCc--------hHHHHHHHHHHHh---hcCCcEEEe---ccchhhccccCcCccee
Q 023156 3 TLMKVFDKAIESRLDRRCTF-VALGGG--------VIGDMCGYAAASY---LRGVSFIQI---PTTVMAQVDSSVGGKTG 67 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~i-iavGGG--------~v~D~ak~~A~~~---~~gip~i~V---PTTl~~~~das~g~k~~ 67 (286)
.+-+.++.+.+.++. +| +.--|| |.+-+||--|+.- ..|+|||+| |||.. |-+|.+.---
T Consensus 145 ki~ra~E~A~e~k~P---~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGG--VsASfA~lGD 219 (294)
T COG0777 145 KITRAIERAIEDKLP---LVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGG--VSASFAMLGD 219 (294)
T ss_pred HHHHHHHHHHHhCCC---EEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccc--hhHhHHhccC
Confidence 456788888888876 54 333444 5778899887653 259999999 55532 2344443333
Q ss_pred eecCCccccccc
Q 023156 68 INHRLGKNLIGA 79 (286)
Q Consensus 68 i~~~~~k~~~g~ 79 (286)
|+..+-+-.+|.
T Consensus 220 i~iAEP~AlIGF 231 (294)
T COG0777 220 IIIAEPGALIGF 231 (294)
T ss_pred eeecCccccccc
Confidence 555555666664
No 94
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=63.88 E-value=13 Score=34.77 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhh
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMA 56 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~ 56 (286)
...++++.+++.|+| .+|-+||==....|+..|. +-++|+|-||=|.-+
T Consensus 82 ~~~~~~~~l~~~gId---~LvvIGGDgS~~gA~~Lae--~~~i~vVGvPkTIDN 130 (347)
T COG0205 82 GRKVAAENLKKLGID---ALVVIGGDGSYTGAALLAE--EGGIPVVGVPKTIDN 130 (347)
T ss_pred HHHHHHHHHHHcCCC---EEEEECCCChHHHHHHHHH--hcCCcEEecCCCccC
Confidence 456788999999999 9999999766777776643 235999999999743
No 95
>PRK13337 putative lipid kinase; Reviewed
Probab=61.73 E-value=19 Score=32.76 Aligned_cols=46 Identities=22% Similarity=0.342 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 4 LMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
..++.+.+.+.+.| .||++|| |++.+++..++.. ....|+..+|.-
T Consensus 46 a~~~a~~~~~~~~d---~vvv~GGDGTl~~vv~gl~~~-~~~~~lgiiP~G 92 (304)
T PRK13337 46 ATLAAERAVERKFD---LVIAAGGDGTLNEVVNGIAEK-ENRPKLGIIPVG 92 (304)
T ss_pred HHHHHHHHHhcCCC---EEEEEcCCCHHHHHHHHHhhC-CCCCcEEEECCc
Confidence 44555555555554 8888877 8999998776432 235789999954
No 96
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=59.45 E-value=18 Score=37.44 Aligned_cols=64 Identities=14% Similarity=0.272 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh--------------------hcCCcEEEeccchhh---ccc
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVMA---QVD 59 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~--------------------~~gip~i~VPTTl~~---~~d 59 (286)
...++++.++++++| .+|.+||-=.++.|...+--| ..++|++-||=|..+ .+|
T Consensus 82 ~~~~~~~~L~~~~Id---~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd 158 (745)
T TIGR02478 82 GRLKAARNLIKRGID---NLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTD 158 (745)
T ss_pred HHHHHHHHHHHhCCC---EEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCc
Confidence 346889999999999 999999988888886443211 238999999999864 446
Q ss_pred cCcCcceeee
Q 023156 60 SSVGGKTGIN 69 (286)
Q Consensus 60 as~g~k~~i~ 69 (286)
-++|--|+++
T Consensus 159 ~TiGfdTA~~ 168 (745)
T TIGR02478 159 MTIGADSALH 168 (745)
T ss_pred CCCCHHHHHH
Confidence 6676666654
No 97
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=59.00 E-value=17 Score=30.36 Aligned_cols=41 Identities=20% Similarity=0.360 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
+.+...++++++.|++ + -||||.+++.|+ ..|+|.+.+-++
T Consensus 112 ~e~~~~i~~~~~~G~~---v--iVGg~~~~~~A~------~~gl~~v~i~sg 152 (176)
T PF06506_consen 112 EEIEAAIKQAKAEGVD---V--IVGGGVVCRLAR------KLGLPGVLIESG 152 (176)
T ss_dssp HHHHHHHHHHHHTT-----E--EEESHHHHHHHH------HTTSEEEESS--
T ss_pred HHHHHHHHHHHHcCCc---E--EECCHHHHHHHH------HcCCcEEEEEec
Confidence 4678889999999987 4 468888887764 369999888664
No 98
>PRK00861 putative lipid kinase; Reviewed
Probab=58.64 E-value=22 Score=32.19 Aligned_cols=44 Identities=23% Similarity=0.338 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 4 LMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
..++.+.+.+.+.| .||++|| |++..++..+. ..++|+..||.-
T Consensus 46 a~~~a~~~~~~~~d---~vv~~GGDGTl~evv~~l~---~~~~~lgviP~G 90 (300)
T PRK00861 46 ADQLAQEAIERGAE---LIIASGGDGTLSAVAGALI---GTDIPLGIIPRG 90 (300)
T ss_pred HHHHHHHHHhcCCC---EEEEECChHHHHHHHHHHh---cCCCcEEEEcCC
Confidence 34555566556554 8888887 78888877663 357899999964
No 99
>PLN02929 NADH kinase
Probab=57.71 E-value=26 Score=32.18 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCCC--------------CCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023156 3 TLMKVFDKAIESRLD--------------RRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~--------------r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
.+..+.+.+.+.|++ ..|+||++|| |+++-++.++ ..++|++-|-+
T Consensus 35 ~~~~~~~~L~~~gi~~~~v~r~~~~~~~~~~Dlvi~lGGDGT~L~aa~~~----~~~iPvlGIN~ 95 (301)
T PLN02929 35 TVNFCKDILQQKSVDWECVLRNELSQPIRDVDLVVAVGGDGTLLQASHFL----DDSIPVLGVNS 95 (301)
T ss_pred HHHHHHHHHHHcCCEEEEeeccccccccCCCCEEEEECCcHHHHHHHHHc----CCCCcEEEEEC
Confidence 466677777776643 4589999998 7888776654 35788877654
No 100
>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG. SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.
Probab=57.64 E-value=23 Score=26.20 Aligned_cols=47 Identities=17% Similarity=0.267 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHH--h--hcCCcEEEeccc
Q 023156 4 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAAS--Y--LRGVSFIQIPTT 53 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~--~--~~gip~i~VPTT 53 (286)
...+...+++.+.- .|-|+|.|.+.-..|++|-+ | ..|+.++.+|.=
T Consensus 16 AgAIa~~lre~~~v---~lqaiGa~AvnqAvKAIAiAR~~l~~~g~dl~~~P~F 66 (86)
T PF04232_consen 16 AGAIAGVLREGGKV---ELQAIGAGAVNQAVKAIAIARGYLAPDGIDLVCVPAF 66 (86)
T ss_dssp HHHHHHHHHHTSEE---EEEE-SHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEE
T ss_pred HHHHHHHHhcCCcE---EEEEECHHHHHHHHHHHHHHHHhhhhhCceEEEEeeE
Confidence 34567778888765 89999999999999999865 2 358999999965
No 101
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=56.24 E-value=22 Score=31.30 Aligned_cols=48 Identities=19% Similarity=0.393 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccch
Q 023156 4 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 54 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl 54 (286)
+.|++..++.....+.+.+|.+-| .=+=+-..+|. +-.+|+|.+||+.
T Consensus 158 iHRLl~~l~r~~~~~~~~lIVvAG-MEGaLPsvvag--LvD~PVIavPTsV 205 (254)
T COG1691 158 IHRLLSALKRLKIEDADVLIVVAG-MEGALPSVVAG--LVDVPVIAVPTSV 205 (254)
T ss_pred HHhhhhHHHHHHhhCCCeEEEEcc-cccchHHHHHh--ccCCCeEeccccc
Confidence 456666555555555567766644 22223334433 2478999999974
No 102
>PRK13057 putative lipid kinase; Reviewed
Probab=56.15 E-value=28 Score=31.26 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=25.0
Q ss_pred CceEEEEcC-chHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 19 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 19 ~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
.|.||++|| |++..++-.+. .+++|+..||.-
T Consensus 51 ~d~iiv~GGDGTv~~v~~~l~---~~~~~lgiiP~G 83 (287)
T PRK13057 51 VDLVIVGGGDGTLNAAAPALV---ETGLPLGILPLG 83 (287)
T ss_pred CCEEEEECchHHHHHHHHHHh---cCCCcEEEECCC
Confidence 458999988 88888887663 368999999954
No 103
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=55.41 E-value=24 Score=31.39 Aligned_cols=41 Identities=17% Similarity=0.187 Sum_probs=27.6
Q ss_pred HHHHHcCCCCCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023156 9 DKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 9 ~~~~~~~~~r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
+.+-...++..|+||.+|| |+++-.+...+ ..++|++-|-+
T Consensus 16 ~~~~~~~~~~~Dlvi~iGGDGTlL~a~~~~~---~~~~PvlGIN~ 57 (246)
T PRK04761 16 KRYGDVPIEEADVIVALGGDGFMLQTLHRYM---NSGKPVYGMNR 57 (246)
T ss_pred HHhCCCCcccCCEEEEECCCHHHHHHHHHhc---CCCCeEEEEeC
Confidence 3333334466789999998 88887777652 35778766654
No 104
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.04 E-value=29 Score=31.37 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=21.8
Q ss_pred CceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023156 19 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 19 ~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
.|+||++|| |+++-++. . +.+++|++.||+
T Consensus 58 ~d~vi~iGGDGTlL~a~~-~---~~~~~pi~gIn~ 88 (277)
T PRK03708 58 VDFIIAIGGDGTILRIEH-K---TKKDIPILGINM 88 (277)
T ss_pred CCEEEEEeCcHHHHHHHH-h---cCCCCeEEEEeC
Confidence 569999998 55555655 3 346888888885
No 105
>PRK13054 lipid kinase; Reviewed
Probab=55.00 E-value=32 Score=31.17 Aligned_cols=47 Identities=19% Similarity=0.207 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcC-chHHHHHHHHHHH-hhcCCcEEEeccc
Q 023156 4 LMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAAS-YLRGVSFIQIPTT 53 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGG-G~v~D~ak~~A~~-~~~gip~i~VPTT 53 (286)
..++.+++.+.+.| .||++|| |++..++-.++.. ....+|+..||.-
T Consensus 45 a~~~a~~~~~~~~d---~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 45 AARYVEEALALGVA---TVIAGGGDGTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred HHHHHHHHHHcCCC---EEEEECCccHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 45566666666654 8888877 8988888776421 1224789999964
No 106
>PRK13055 putative lipid kinase; Reviewed
Probab=53.05 E-value=35 Score=31.58 Aligned_cols=45 Identities=24% Similarity=0.360 Sum_probs=31.0
Q ss_pred HHHHHHHHHcCCCCCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 5 MKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 5 ~~~~~~~~~~~~~r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
.++.+.+.+.+.| .||++|| |++..++-.+.. .....|+..||.-
T Consensus 49 ~~~~~~~~~~~~d---~vvv~GGDGTl~evvngl~~-~~~~~~LgiiP~G 94 (334)
T PRK13055 49 KNEAKRAAEAGFD---LIIAAGGDGTINEVVNGIAP-LEKRPKMAIIPAG 94 (334)
T ss_pred HHHHHHHhhcCCC---EEEEECCCCHHHHHHHHHhh-cCCCCcEEEECCC
Confidence 4455555555554 9999988 888888876642 2245789999964
No 107
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=53.03 E-value=25 Score=36.52 Aligned_cols=64 Identities=8% Similarity=0.197 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh--------------------hcCCcEEEeccchhh---ccc
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY--------------------LRGVSFIQIPTTVMA---QVD 59 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~--------------------~~gip~i~VPTTl~~---~~d 59 (286)
...++++.++++++| .+|.+||-=.++.|....+-| ..+++++-||=|.-+ ..|
T Consensus 85 ~~~~a~~~L~~~~Id---~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gTD 161 (762)
T cd00764 85 GRLQAAYNLIQRGIT---NLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTD 161 (762)
T ss_pred HHHHHHHHHHHcCCC---EEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCCc
Confidence 456889999999998 999999988888886443111 247999999999864 456
Q ss_pred cCcCcceeee
Q 023156 60 SSVGGKTGIN 69 (286)
Q Consensus 60 as~g~k~~i~ 69 (286)
-++|-.++++
T Consensus 162 ~TiGfdTAl~ 171 (762)
T cd00764 162 MTIGTDSALH 171 (762)
T ss_pred CCCCHHHHHH
Confidence 6777766655
No 108
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=53.01 E-value=29 Score=32.36 Aligned_cols=41 Identities=24% Similarity=0.392 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCCCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 6 KVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 6 ~~~~~~~~~~~~r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
...+.+.+.|+| +|+-+|| |+.-|+++.+ ...+|+.-|||-
T Consensus 91 ~~~r~~~~~gVd---lIvfaGGDGTarDVa~av----~~~vPvLGipaG 132 (355)
T COG3199 91 NAVRRMVERGVD---LIVFAGGDGTARDVAEAV----GADVPVLGIPAG 132 (355)
T ss_pred HHHHHHHhcCce---EEEEeCCCccHHHHHhhc----cCCCceEeeccc
Confidence 456777788888 8888877 8888988876 468999999975
No 109
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.89 E-value=36 Score=30.39 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHcCCC------------CCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEec
Q 023156 2 DTLMKVFDKAIESRLD------------RRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIP 51 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~------------r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VP 51 (286)
+...++.+++.+.|.. ..|+||++|| |+.+-.+... ++|++-|-
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGT~L~a~~~~------~~Pilgin 69 (256)
T PRK14075 13 KEAKFLKEKISKEHEVVEFCEASASGKVTADLIIVVGGDGTVLKAAKKV------GTPLVGFK 69 (256)
T ss_pred HHHHHHHHHHHHcCCeeEeecccccccCCCCEEEEECCcHHHHHHHHHc------CCCEEEEe
Confidence 3466777778776532 4579999999 5554443322 67765554
No 110
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=52.59 E-value=11 Score=31.75 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=18.9
Q ss_pred HHHHHHHHcCCCCCceEEEEcCchHHHHHHHH
Q 023156 6 KVFDKAIESRLDRRCTFVALGGGVIGDMCGYA 37 (286)
Q Consensus 6 ~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~ 37 (286)
++++.+...+ +.|||.|||++++=--.-
T Consensus 63 ~vl~~l~~~~----~~ViaTGGG~v~~~enr~ 90 (172)
T COG0703 63 EVLKELLEED----NAVIATGGGAVLSEENRN 90 (172)
T ss_pred HHHHHHhhcC----CeEEECCCccccCHHHHH
Confidence 3444455444 399999999999765444
No 111
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.79 E-value=43 Score=30.51 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=23.2
Q ss_pred CceEEEEcC-chHHHHHHHHHHHhhcCCcEEEec
Q 023156 19 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIP 51 (286)
Q Consensus 19 ~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VP 51 (286)
.|++|++|| |+++.++...+ ..++|++-|-
T Consensus 65 ~Dlvi~iGGDGT~L~aa~~~~---~~~~PilGIN 95 (287)
T PRK14077 65 SDFLISLGGDGTLISLCRKAA---EYDKFVLGIH 95 (287)
T ss_pred CCEEEEECCCHHHHHHHHHhc---CCCCcEEEEe
Confidence 579999998 88899888763 3578876664
No 112
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=51.39 E-value=24 Score=31.09 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=27.8
Q ss_pred CCceEEEEcCchHHHHH-HHHHHHhh-cCCcEEEeccchh
Q 023156 18 RRCTFVALGGGVIGDMC-GYAAASYL-RGVSFIQIPTTVM 55 (286)
Q Consensus 18 r~d~iiavGGG~v~D~a-k~~A~~~~-~gip~i~VPTTl~ 55 (286)
++.++|++|.||+.=.. +++|...+ .++.+..|||+..
T Consensus 20 ~~gmvvGLGTGSTv~~~i~~L~~~~~~~~l~i~~VptS~~ 59 (228)
T PRK13978 20 NGDMTLGIGTGSTMELLLPQMAQLIKERGYNITGVCTSNK 59 (228)
T ss_pred CCCCEEEeCchHHHHHHHHHHHHHhhccCccEEEEeCcHH
Confidence 46799999999987743 77765443 2566788999865
No 113
>PRK12361 hypothetical protein; Provisional
Probab=50.46 E-value=33 Score=34.02 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 4 LMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
..++.+++.+.+.| .||++|| |++..++-.+. ..++|+..||.-
T Consensus 286 a~~la~~~~~~~~d---~Viv~GGDGTl~ev~~~l~---~~~~~lgiiP~G 330 (547)
T PRK12361 286 AEALAKQARKAGAD---IVIACGGDGTVTEVASELV---NTDITLGIIPLG 330 (547)
T ss_pred HHHHHHHHHhcCCC---EEEEECCCcHHHHHHHHHh---cCCCCEEEecCC
Confidence 35566666666655 8888887 88888876653 467999999954
No 114
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=50.42 E-value=50 Score=25.68 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=22.6
Q ss_pred ceEEEEcC-chHHHHHHHHHHHhhcCC----cEEEeccc
Q 023156 20 CTFVALGG-GVIGDMCGYAAASYLRGV----SFIQIPTT 53 (286)
Q Consensus 20 d~iiavGG-G~v~D~ak~~A~~~~~gi----p~i~VPTT 53 (286)
|.||++|| |++.+++..+. .+.. |+..+|.-
T Consensus 56 ~~ivv~GGDGTl~~vv~~l~---~~~~~~~~~l~iiP~G 91 (130)
T PF00781_consen 56 DVIVVVGGDGTLNEVVNGLM---GSDREDKPPLGIIPAG 91 (130)
T ss_dssp SEEEEEESHHHHHHHHHHHC---TSTSSS--EEEEEE-S
T ss_pred cEEEEEcCccHHHHHHHHHh---hcCCCccceEEEecCC
Confidence 58888887 88888887763 3444 89999953
No 115
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.38 E-value=39 Score=30.96 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=23.9
Q ss_pred CceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023156 19 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 19 ~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
.|+||++|| |+++-++.... ..++|++-|.+
T Consensus 58 ~d~vi~~GGDGT~l~~~~~~~---~~~~pv~gin~ 89 (305)
T PRK02645 58 IDLAIVLGGDGTVLAAARHLA---PHDIPILSVNV 89 (305)
T ss_pred cCEEEEECCcHHHHHHHHHhc---cCCCCEEEEec
Confidence 579999988 78887777652 46889888886
No 116
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=48.15 E-value=46 Score=30.00 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcC-chHHHHHHHHHHHh-hcCCcEEEeccc
Q 023156 4 LMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASY-LRGVSFIQIPTT 53 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGG-G~v~D~ak~~A~~~-~~gip~i~VPTT 53 (286)
..++.+.+.+.+.| .||++|| |++..++-.+...- ....|+..||.-
T Consensus 41 a~~~a~~~~~~~~d---~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~G 89 (293)
T TIGR03702 41 AQRYVAEALALGVS---TVIAGGGDGTLREVATALAQIRDDAAPALGLLPLG 89 (293)
T ss_pred HHHHHHHHHHcCCC---EEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcCC
Confidence 44556666556554 9999988 88888886664210 123579999964
No 117
>PLN02384 ribose-5-phosphate isomerase
Probab=45.60 E-value=58 Score=29.33 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=27.3
Q ss_pred CCceEEEEcCchHHHHH-HHHHHHhhcC-Cc-EEEeccchhh
Q 023156 18 RRCTFVALGGGVIGDMC-GYAAASYLRG-VS-FIQIPTTVMA 56 (286)
Q Consensus 18 r~d~iiavGGG~v~D~a-k~~A~~~~~g-ip-~i~VPTTl~~ 56 (286)
++.++|++|.||+.=.. +.+|...+.+ +. +..|||+..+
T Consensus 48 ~~gmvVGLGTGSTv~~~I~~La~r~~~~~l~~I~~VpTS~~T 89 (264)
T PLN02384 48 ESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSKKT 89 (264)
T ss_pred cCCCEEEecchHHHHHHHHHHHHhhhhccccceEEEcCcHHH
Confidence 46799999999987743 6666444333 44 7889998653
No 118
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=45.55 E-value=46 Score=32.63 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCCCCceEEEEcC-chHHHHHHHHHHHh----hcCCcEEEeccc
Q 023156 6 KVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASY----LRGVSFIQIPTT 53 (286)
Q Consensus 6 ~~~~~~~~~~~~r~d~iiavGG-G~v~D~ak~~A~~~----~~gip~i~VPTT 53 (286)
++++.+...+ .|.||++|| |++..++-.+...- ...+|+..||.-
T Consensus 159 ~la~~~~~~~---~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaG 208 (481)
T PLN02958 159 EVVRTMDLSK---YDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAG 208 (481)
T ss_pred HHHHHhhhcC---CCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCc
Confidence 3444443333 459999998 99999987663210 125899999964
No 119
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=45.35 E-value=56 Score=29.78 Aligned_cols=30 Identities=33% Similarity=0.351 Sum_probs=22.0
Q ss_pred CceEEEEcC-chHHHHHHHHHHHhhcCCcEEEec
Q 023156 19 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIP 51 (286)
Q Consensus 19 ~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VP 51 (286)
.|+||++|| |+++.++...+ ..++|++-|-
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~---~~~~pilGIn 94 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLA---PYGVPLIGIN 94 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhc---CCCCCEEEEc
Confidence 569999998 88888887653 3577776555
No 120
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.09 E-value=53 Score=29.98 Aligned_cols=31 Identities=19% Similarity=0.227 Sum_probs=21.8
Q ss_pred CceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023156 19 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 19 ~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
.|+||++|| |+++.++.... ..++|++-|.+
T Consensus 63 ~d~vi~~GGDGt~l~~~~~~~---~~~~Pvlgin~ 94 (295)
T PRK01231 63 CDLVIVVGGDGSLLGAARALA---RHNVPVLGINR 94 (295)
T ss_pred CCEEEEEeCcHHHHHHHHHhc---CCCCCEEEEeC
Confidence 568999987 77887776552 35777776664
No 121
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=44.65 E-value=29 Score=30.30 Aligned_cols=50 Identities=16% Similarity=0.319 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHH--HcCCCCCCCCCCCHHHHHHHHHhchhccCCeeEEEeecCCCcceEE
Q 023156 208 IDDSIVKRVHNILQ--QAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVF 267 (286)
Q Consensus 208 ~~~~~~~~i~~~l~--~~glp~~l~~~~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~ 267 (286)
++.+..++|+.+|- ++.||+.+.+-.|.-.+++.|+| +.+ |+.. ||+..+
T Consensus 101 ISAKvm~~ikavLgaTKiDLPVDINDPYDlGLLLRhLRH-HSN--------LLAn-IgdP~V 152 (238)
T PF02084_consen 101 ISAKVMEDIKAVLGATKIDLPVDINDPYDLGLLLRHLRH-HSN--------LLAN-IGDPEV 152 (238)
T ss_pred ccHHHHHHHHHHhcccccccccccCChhhHHHHHHHHHH-HHH--------HHhh-cCCHHH
Confidence 45667888888884 57788887665666677888777 222 5775 998754
No 122
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=44.48 E-value=53 Score=30.03 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcC-chHHHHHHHHHHHhhcCCc-EEEeccc
Q 023156 4 LMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVS-FIQIPTT 53 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGG-G~v~D~ak~~A~~~~~gip-~i~VPTT 53 (286)
+.++++.+...+.| .||+.|| |++.-++-.+ +.++.| +..||+-
T Consensus 47 a~~~a~~a~~~~~D---~via~GGDGTv~evingl---~~~~~~~LgilP~G 92 (301)
T COG1597 47 AIEIAREAAVEGYD---TVIAAGGDGTVNEVANGL---AGTDDPPLGILPGG 92 (301)
T ss_pred HHHHHHHHHhcCCC---EEEEecCcchHHHHHHHH---hcCCCCceEEecCC
Confidence 45666666666665 8888887 6766666555 456777 8899964
No 123
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=44.32 E-value=64 Score=19.61 Aligned_cols=30 Identities=10% Similarity=0.170 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHh
Q 023156 214 KRVHNILQQAKLPTAPPDTMTVEMFKSIMAV 244 (286)
Q Consensus 214 ~~i~~~l~~~glp~~l~~~~~~~~~~~~l~~ 244 (286)
+.+..+|++.|+|..-.. .+.|++++.++.
T Consensus 7 ~~L~~wL~~~gi~~~~~~-~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 7 SDLKSWLKSHGIPVPKSA-KTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHcCCCCCCCC-CCHHHHHHHHHH
Confidence 578899999999987543 478888776643
No 124
>PRK02399 hypothetical protein; Provisional
Probab=44.00 E-value=76 Score=30.40 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=27.6
Q ss_pred CCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhh
Q 023156 18 RRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMA 56 (286)
Q Consensus 18 r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~ 56 (286)
+-+-||++||+.=.+++-.+--..--|+|=+.|-|-.+.
T Consensus 95 ~i~gviglGGs~GT~lat~aMr~LPiG~PKlmVSTmAsg 133 (406)
T PRK02399 95 DVAGVIGLGGSGGTALATPAMRALPIGVPKLMVSTMASG 133 (406)
T ss_pred CccEEEEecCcchHHHHHHHHHhCCCCCCeEEEEccccC
Confidence 344999999999888887664444457777777766544
No 125
>PRK13059 putative lipid kinase; Reviewed
Probab=43.60 E-value=57 Score=29.48 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=24.9
Q ss_pred CceEEEEcC-chHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 19 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 19 ~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
.|.||++|| |++..++..++. ...++|+..||.-
T Consensus 57 ~d~vi~~GGDGTv~evv~gl~~-~~~~~~lgviP~G 91 (295)
T PRK13059 57 YKYILIAGGDGTVDNVVNAMKK-LNIDLPIGILPVG 91 (295)
T ss_pred CCEEEEECCccHHHHHHHHHHh-cCCCCcEEEECCC
Confidence 359999988 888888876642 1346899999953
No 126
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=43.53 E-value=54 Score=32.97 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
.+.++.+.+.+.+++ +||++=|+ ..-+.+.+|+ ..-+|+|.||+.
T Consensus 453 ~~~~~~~~~~~~~~~---v~i~~ag~-~~~l~~~~a~--~t~~pvi~vp~~ 497 (577)
T PLN02948 453 RMFSYARSAHSRGLQ---VIIAGAGG-AAHLPGMVAS--MTPLPVIGVPVK 497 (577)
T ss_pred HHHHHHHHHHHCCCC---EEEEEcCc-cccchHHHhh--ccCCCEEEcCCC
Confidence 455666666777776 88887766 5678888875 478999999986
No 127
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=42.21 E-value=74 Score=24.72 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=23.7
Q ss_pred CCceEEEEcC-chHHHHHHHHHHHhhcC---CcEEEeccc
Q 023156 18 RRCTFVALGG-GVIGDMCGYAAASYLRG---VSFIQIPTT 53 (286)
Q Consensus 18 r~d~iiavGG-G~v~D~ak~~A~~~~~g---ip~i~VPTT 53 (286)
..|.|+++|| |++..+.-.+... ... .|+..||.-
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~-~~~~~~~plgiiP~G 87 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKR-ELPLPEPPVAVLPLG 87 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhc-ccccCCCcEEEeCCC
Confidence 4568888888 8888887666321 111 789999953
No 128
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=41.64 E-value=1.2e+02 Score=26.32 Aligned_cols=97 Identities=18% Similarity=0.143 Sum_probs=54.0
Q ss_pred HHHcCCCCCceEEEEcC-chH----------------HHHHHHHHHHhhcCCcEEEe---ccchhhccccCc-Ccceeee
Q 023156 11 AIESRLDRRCTFVALGG-GVI----------------GDMCGYAAASYLRGVSFIQI---PTTVMAQVDSSV-GGKTGIN 69 (286)
Q Consensus 11 ~~~~~~~r~d~iiavGG-G~v----------------~D~ak~~A~~~~~gip~i~V---PTTl~~~~das~-g~k~~i~ 69 (286)
+.+.+.+..|.|+--|| |.. -++.+++...+..|.|+.+| |..|... . -|++.-.
T Consensus 78 l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~----~~~gr~~T~ 153 (217)
T PRK11780 78 LAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKI----LGAGVKLTI 153 (217)
T ss_pred hhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHH----hccCcEEEe
Confidence 34445666789999999 432 13666776677889999999 6554431 2 2332212
Q ss_pred c--CCccc---cccccc---Ccceeeeeh--------HhhcCCCHHHHHhhHHHHHHH
Q 023156 70 H--RLGKN---LIGAFY---QPQCVLVDT--------DTLNTLPDRELASGLAEVIKY 111 (286)
Q Consensus 70 ~--~~~k~---~~g~~~---~P~~viiD~--------~~l~tlP~~~~~~G~~D~lk~ 111 (286)
+ +..+. ..|.-+ ++.-|++|- .++.+....++..|+..++..
T Consensus 154 ~~~~~~~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~~~~~~~~~~~~~~i~~~~~~ 211 (217)
T PRK11780 154 GNDEDTAAAIEKMGGEHVDCPVDDIVVDEENKVVTTPAYMLAQSIAEAASGIEKLVSR 211 (217)
T ss_pred cCChhhHHHHHHCCCEEEcCCCCeEEEECCCCEEeCCcccCCCCHHHHHHHHHHHHHH
Confidence 2 22221 123333 234788883 233333556666777776654
No 129
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=41.55 E-value=1.1e+02 Score=28.23 Aligned_cols=82 Identities=26% Similarity=0.293 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcce---eeecCCccccccc
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKT---GINHRLGKNLIGA 79 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~---~i~~~~~k~~~g~ 79 (286)
.+.++.+.+.+.+ ..-++-+|||++-+-.=.+. .++.|.+|..-=||... -|+|.+|-+ ++.. +| +..
T Consensus 207 D~~~l~~i~~~~~---~~G~iilGGGvpKh~~~~~~-l~~~G~dYaVqItta~~-~dGslSGA~~~EAvSW--GK--i~~ 277 (301)
T TIGR00321 207 DIRKLNDIVFNSE---RTGVIILGGGLPKHFILNAC-LLREGADYAVQITTDQP-QDGSLSGAPLEEAVSW--GK--IKA 277 (301)
T ss_pred hHHHHHHHHHccC---ceEEEEECCchhhhHHHHhh-hccCCCCEEEEEeCCCC-CCCcccCCChhhhhcc--CC--ccC
Confidence 4566666666443 34788999999988776553 45679998776666443 255555522 2222 22 222
Q ss_pred ccCcceeeeehHhh
Q 023156 80 FYQPQCVLVDTDTL 93 (286)
Q Consensus 80 ~~~P~~viiD~~~l 93 (286)
-..+..|+.|-.++
T Consensus 278 ~a~~v~V~~DATI~ 291 (301)
T TIGR00321 278 KAKSVTVFGDATIA 291 (301)
T ss_pred CCceEEEEEehhhH
Confidence 23566677776654
No 130
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=40.87 E-value=1.7e+02 Score=26.43 Aligned_cols=74 Identities=15% Similarity=0.270 Sum_probs=48.0
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCCCCCCCCCC--------HHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCC
Q 023156 200 DMSYRLGWIDDSIVKRVHNILQQAKLPTAPPDTMT--------VEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDY 271 (286)
Q Consensus 200 ~l~~~~g~~~~~~~~~i~~~l~~~glp~~l~~~~~--------~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v 271 (286)
|+++..|.-..+...++..||++++++-...+.+. .=+|+.++.+.+. ++++..|+.-. ..|
T Consensus 95 yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePe-------LlILDEPFSGL---DPV 164 (300)
T COG4152 95 YLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPE-------LLILDEPFSGL---DPV 164 (300)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCC-------EEEecCCccCC---Chh
Confidence 45665676555667899999999999766543221 1234555555433 55666677655 678
Q ss_pred CHHHHHHHHHHH
Q 023156 272 DRKALDDTLYAF 283 (286)
Q Consensus 272 ~~~~~~~~~~~~ 283 (286)
..+.+++++.++
T Consensus 165 N~elLk~~I~~l 176 (300)
T COG4152 165 NVELLKDAIFEL 176 (300)
T ss_pred hHHHHHHHHHHH
Confidence 888888887654
No 131
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=40.24 E-value=25 Score=28.52 Aligned_cols=30 Identities=17% Similarity=0.149 Sum_probs=18.7
Q ss_pred ceEEEEcCchHHHHHHHHHHHhhcCCcEEEec
Q 023156 20 CTFVALGGGVIGDMCGYAAASYLRGVSFIQIP 51 (286)
Q Consensus 20 d~iiavGGG~v~D~ak~~A~~~~~gip~i~VP 51 (286)
..||+.|||++++-.-.- ..+..-++|.+-
T Consensus 63 ~~VIa~GGG~~~~~~~~~--~L~~~g~vI~L~ 92 (158)
T PF01202_consen 63 NCVIACGGGIVLKEENRE--LLKENGLVIYLD 92 (158)
T ss_dssp SEEEEE-TTGGGSHHHHH--HHHHHSEEEEEE
T ss_pred cEEEeCCCCCcCcHHHHH--HHHhCCEEEEEe
Confidence 599999999998876443 222244555553
No 132
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=40.11 E-value=67 Score=28.79 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=26.7
Q ss_pred HHHHHHcCCCCCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 8 FDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 8 ~~~~~~~~~~r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
.+.+.+.++ |.||++|| |++..++..+... ....|+..||.-
T Consensus 50 ~~~~~~~~~---d~ivv~GGDGTl~~v~~~l~~~-~~~~~lgiiP~G 92 (293)
T TIGR00147 50 VEEARKFGV---DTVIAGGGDGTINEVVNALIQL-DDIPALGILPLG 92 (293)
T ss_pred HHHHHhcCC---CEEEEECCCChHHHHHHHHhcC-CCCCcEEEEcCc
Confidence 333444444 48888887 9999998877421 122467779963
No 133
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=39.09 E-value=33 Score=32.26 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=11.6
Q ss_pred HHHHHHHcCCCCCceEEEEcCchHH
Q 023156 7 VFDKAIESRLDRRCTFVALGGGVIG 31 (286)
Q Consensus 7 ~~~~~~~~~~~r~d~iiavGGG~v~ 31 (286)
..+.|.+.|+| -+.|++|+||+|
T Consensus 162 ~a~~L~~aGad--~vkVGiGpGsiC 184 (352)
T PF00478_consen 162 GAKDLIDAGAD--AVKVGIGPGSIC 184 (352)
T ss_dssp HHHHHHHTT-S--EEEESSSSSTTB
T ss_pred HHHHHHHcCCC--EEEEeccCCccc
Confidence 33445555554 344666666655
No 134
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=38.98 E-value=67 Score=30.87 Aligned_cols=45 Identities=20% Similarity=0.263 Sum_probs=26.1
Q ss_pred HHHHHHHHHHcCCCCCc-eEEEEcCchHHHHHHH-----HHHHhhcCCcEE
Q 023156 4 LMKVFDKAIESRLDRRC-TFVALGGGVIGDMCGY-----AAASYLRGVSFI 48 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d-~iiavGGG~v~D~ak~-----~A~~~~~gip~i 48 (286)
..++++.+...+-...| +||+=||||.-|+.-| +-+.+...+|+|
T Consensus 178 ~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai~~~~~Pvi 228 (438)
T PRK00286 178 AASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAIAASRIPVI 228 (438)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHHHcCCCCEE
Confidence 45566666554321134 6788999999998432 112234566664
No 135
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=38.47 E-value=83 Score=28.15 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=24.2
Q ss_pred CceEEEEcCchHHHHH-HHHHHHhhcC---CcEEEeccchhh
Q 023156 19 RCTFVALGGGVIGDMC-GYAAASYLRG---VSFIQIPTTVMA 56 (286)
Q Consensus 19 ~d~iiavGGG~v~D~a-k~~A~~~~~g---ip~i~VPTTl~~ 56 (286)
+-+||+||.|++.+-+ -++. .|.+. -.++.|||..-+
T Consensus 42 ~g~ViGiGsGstv~~~v~~i~-q~l~~~~l~~vvgVPts~~s 82 (261)
T KOG3075|consen 42 NGMVIGIGSGSTVVYAVDRIG-QLLFDGDLGNVVGVPTSFRS 82 (261)
T ss_pred CCeEEEecCccHHHHHHHHHH-HHhcCCCcCceEecccchhh
Confidence 5599999999976543 3332 23322 348999998654
No 136
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=37.12 E-value=55 Score=29.94 Aligned_cols=32 Identities=16% Similarity=0.250 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCCC----CCc-eEEEEcCchHHHHHHH
Q 023156 5 MKVFDKAIESRLD----RRC-TFVALGGGVIGDMCGY 36 (286)
Q Consensus 5 ~~~~~~~~~~~~~----r~d-~iiavGGG~v~D~ak~ 36 (286)
.++++.+...+-. ..| +||+=||||.-|+.-|
T Consensus 58 ~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~F 94 (319)
T PF02601_consen 58 ASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAF 94 (319)
T ss_pred HHHHHHHHHHHhccccccccEEEEecCCCChHHhccc
Confidence 4445555444322 244 5788899999998654
No 137
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=37.10 E-value=50 Score=30.74 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCCCCCC-CCCCHHHHHHHHHhchhccCCeeEEEeecCCCcceE-EcC--------CCCHHHHHHHHHH
Q 023156 213 VKRVHNILQQAKLPTAPP-DTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCV-FTG--------DYDRKALDDTLYA 282 (286)
Q Consensus 213 ~~~i~~~l~~~glp~~l~-~~~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~-~~~--------~v~~~~~~~~~~~ 282 (286)
.+.+.+.++.+|..+.-- +.-+.+.+.+++...++. .++..+++.++.+|.-. +.. .+++|+++++.++
T Consensus 195 ~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~-~~kP~~Ii~~TvkG~G~~~~e~~~~~Hg~~l~~ee~~~~k~~ 273 (332)
T PF00456_consen 195 SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKAS-KGKPTVIIARTVKGKGVPFMEGTAKWHGSPLTEEEVEQAKKE 273 (332)
T ss_dssp HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHS-TSS-EEEEEEE-TTTTSTTTTTSGGGTSS--HHHHHHHHHHH
T ss_pred chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhc-CCCCceeecceEEecCchhhcccchhhccCCcHHHHHHHHHH
Confidence 345678889999876532 345789999999987654 47888888877677643 211 2567777776654
Q ss_pred H
Q 023156 283 F 283 (286)
Q Consensus 283 ~ 283 (286)
+
T Consensus 274 l 274 (332)
T PF00456_consen 274 L 274 (332)
T ss_dssp T
T ss_pred c
Confidence 3
No 138
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=36.69 E-value=2.5e+02 Score=23.43 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=52.8
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCC-CCCCC---------C-CCCHHHHHHHHHhchh------ccCCeeEEEeecCC
Q 023156 199 VDMSYRLGWIDDSIVKRVHNILQQAKL-PTAPP---------D-TMTVEMFKSIMAVDKK------VADGLLRLILLKGP 261 (286)
Q Consensus 199 ~~l~~~~g~~~~~~~~~i~~~l~~~gl-p~~l~---------~-~~~~~~~~~~l~~dkk------~~~~~~~~~l~~~~ 261 (286)
.++|..+|+ +..++..+..|+..|.. |.--. . .-.-+++++++.+.-. ..+|++.+-....
T Consensus 58 ~~iA~~l~v-~~a~V~gVatFY~~f~~~P~Gk~~I~VC~g~aC~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL~~~~C- 135 (169)
T PRK07571 58 LYVARQLKL-PLSRVYGVATFYHLFSLKPSGEHTCVVCTGTACYVKGSAAILEDLENELGIKAGETTADGKLSLLTARC- 135 (169)
T ss_pred HHHHHHhCc-CHHHHHHHHHHccccCcCCCCCEEEEEcCChHHHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEEEEecc-
Confidence 345555553 55667788888877765 32100 0 0133666777655322 4667788777777
Q ss_pred CcceE----------EcCCCCHHHHHHHHHHH
Q 023156 262 LGNCV----------FTGDYDRKALDDTLYAF 283 (286)
Q Consensus 262 iG~~~----------~~~~v~~~~~~~~~~~~ 283 (286)
+|.|. +..+++.+.+.+++++|
T Consensus 136 lG~C~~AP~~~Vn~~~~~~lt~e~v~~il~~~ 167 (169)
T PRK07571 136 LGACGIAPAVVFDGKVAGKQTPESVLEKVQGW 167 (169)
T ss_pred cCccCCCCeEEECCEEeCCCCHHHHHHHHHHH
Confidence 88774 34578999999999987
No 139
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=36.47 E-value=64 Score=32.06 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEec
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIP 51 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VP 51 (286)
+.+...++.+++.|++ +|| ||+.++|+|+-. |++-+.|-
T Consensus 132 ~e~~~~~~~l~~~G~~---~vi--G~~~~~~~A~~~------gl~~ili~ 170 (526)
T TIGR02329 132 EDARSCVNDLRARGIG---AVV--GAGLITDLAEQA------GLHGVFLY 170 (526)
T ss_pred HHHHHHHHHHHHCCCC---EEE--CChHHHHHHHHc------CCceEEEe
Confidence 4678889999999988 655 999999998754 77777663
No 140
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=35.62 E-value=57 Score=33.16 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHh---h----cCCcEEEeccchh
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASY---L----RGVSFIQIPTTVM 55 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~---~----~gip~i~VPTTl~ 55 (286)
+..-.+.+.|.++|..+.+-|++.||..=+=+.++|+..- . .-+|||-|-||.+
T Consensus 509 ~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMl 569 (682)
T COG1770 509 TDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTML 569 (682)
T ss_pred HHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhc
Confidence 3456788999999999999999999988777888887541 1 3589999888865
No 141
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.51 E-value=92 Score=27.99 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCC------CCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023156 3 TLMKVFDKAIESRLD------RRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~------r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
.+.++.+++.+.|+. ..|++|++|| |+.+.++...+ ....+|++-|.+
T Consensus 18 ~~~~l~~~l~~~g~~~~~~~~~~D~vi~lGGDGT~L~a~~~~~--~~~~~pilgIn~ 72 (264)
T PRK03501 18 KVKPLKKIAEEYGFTVVDHPKNANIIVSIGGDGTFLQAVRKTG--FREDCLYAGIST 72 (264)
T ss_pred HHHHHHHHHHHCCCEEEcCCCCccEEEEECCcHHHHHHHHHhc--ccCCCeEEeEec
Confidence 455667777777643 3689999995 99998888753 223566655544
No 142
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=35.43 E-value=60 Score=30.80 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=29.2
Q ss_pred HHHHHHHHHc--CCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhh
Q 023156 5 MKVFDKAIES--RLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMA 56 (286)
Q Consensus 5 ~~~~~~~~~~--~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~ 56 (286)
.+.+..+++. +.+ +|+++||=. +-+ +++..|+|++.|-|-=++
T Consensus 81 ~~~~~~~~~~~~~p~---~v~~~Gg~v----~~~--aA~~~~~p~~~~~~~esn 125 (396)
T TIGR03492 81 LGQWRALRKWAKKGD---LIVAVGDIV----PLL--FAWLSGKPYAFVGTAKSD 125 (396)
T ss_pred HHHHHHHHHHhhcCC---EEEEECcHH----HHH--HHHHcCCCceEEEeeccc
Confidence 3445556666 555 999999866 222 347889999998776443
No 143
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=33.31 E-value=1.1e+02 Score=25.00 Aligned_cols=46 Identities=9% Similarity=0.065 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEecc
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
...+.+++.|+++|++ .|.++=|+...++...+.. ..+++++....
T Consensus 2 t~~~~l~~~L~~~Gv~---~vfgvpG~~~~~l~~al~~--~~~i~~i~~~~ 47 (172)
T PF02776_consen 2 TGAEALAEALKANGVT---HVFGVPGSGNLPLLDALEK--SPGIRFIPVRH 47 (172)
T ss_dssp EHHHHHHHHHHHTT-S---EEEEE--GGGHHHHHHHHH--TTTSEEEE-SS
T ss_pred cHHHHHHHHHHHCCCe---EEEEEeChhHhHHHHHhhh--hcceeeecccC
Confidence 4567899999999999 9999999999998877742 23788877654
No 144
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=32.86 E-value=97 Score=28.96 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcC-chHHHHHHHHHHHhhcCCcEEEeccc
Q 023156 4 LMKVFDKAIESRLDRRCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPTT 53 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPTT 53 (286)
+.++.+.+.+.+.| +|+..|- .+++..| +| ++++++|++.|=-.
T Consensus 82 ~~~~~~~~~~~~Pd---~vlv~GD~~~~la~a--la-A~~~~IPv~HveaG 126 (365)
T TIGR03568 82 IIGFSDAFERLKPD---LVVVLGDRFEMLAAA--IA-AALLNIPIAHIHGG 126 (365)
T ss_pred HHHHHHHHHHhCCC---EEEEeCCchHHHHHH--HH-HHHhCCcEEEEECC
Confidence 45667777888766 9999994 4444333 33 35689999987533
No 145
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=31.48 E-value=1.3e+02 Score=24.47 Aligned_cols=45 Identities=13% Similarity=0.347 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHH-cCCCCCceEEEEcCchH-HHHHHHHHHHhhc-CCcE
Q 023156 2 DTLMKVFDKAIE-SRLDRRCTFVALGGGVI-GDMCGYAAASYLR-GVSF 47 (286)
Q Consensus 2 ~~v~~~~~~~~~-~~~~r~d~iiavGGG~v-~D~ak~~A~~~~~-gip~ 47 (286)
+.+.+..+.+++ .+++ .=+++|+||... .+++..+...+.+ ++|+
T Consensus 5 ~~i~~~~~~i~~~~~~~-~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i 52 (158)
T cd05015 5 ERIKEFAEKVRSGKKIT-DVVVIGIGGSDLGPRAVYEALKPYFKGGLRL 52 (158)
T ss_pred HHHHHHHHHHhcCCCCC-EEEEEecCccHHHHHHHHHHHHhhccCCceE
Confidence 456667777766 3454 124466666322 3444444333332 5553
No 146
>PRK12373 NADH dehydrogenase subunit E; Provisional
Probab=31.44 E-value=4.8e+02 Score=25.06 Aligned_cols=82 Identities=23% Similarity=0.280 Sum_probs=50.6
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCC-CCCCC----------C-CCCHHHHHHHHHhchh------ccCCeeEEEeecCC
Q 023156 200 DMSYRLGWIDDSIVKRVHNILQQAKL-PTAPP----------D-TMTVEMFKSIMAVDKK------VADGLLRLILLKGP 261 (286)
Q Consensus 200 ~l~~~~g~~~~~~~~~i~~~l~~~gl-p~~l~----------~-~~~~~~~~~~l~~dkk------~~~~~~~~~l~~~~ 261 (286)
+++..+|+ +...+..+..|+..|.+ |+--. + .-.-+++++.+.+.-. ..+|++.+--.+.
T Consensus 60 ~VAe~Lgv-p~~~V~eVATFYtmF~~~P~Gk~~~I~VC~~t~C~l~Ga~~ll~~le~~Lgik~GeTT~DG~FTLe~veC- 137 (400)
T PRK12373 60 KVADMLDM-AYIRVLEVATFYTQFQLQPVGTRAHIQVCGTTPCMLRGSEALMAVCKSKIHAHPHELNADGTLSWEEVEC- 137 (400)
T ss_pred HHHHHhCC-CHHHHHHHHHHhhcccccCCCCceEEEEcCChHHHhCChHHHHHHHHHHhCCCCCCcCCCCeEEEEeeee-
Confidence 34444442 44456667777777764 33210 0 1234677777765322 3467777777777
Q ss_pred CcceE----------EcCCCCHHHHHHHHHHH
Q 023156 262 LGNCV----------FTGDYDRKALDDTLYAF 283 (286)
Q Consensus 262 iG~~~----------~~~~v~~~~~~~~~~~~ 283 (286)
+|.|. +..+++.+.+.++|.++
T Consensus 138 LGaC~~APv~~Ind~~y~~LTpe~v~~IL~~l 169 (400)
T PRK12373 138 LGACVNAPMVQIGKDYYEDLTPERLEEIIDAF 169 (400)
T ss_pred cCccCCCCeEEECCEEeCCCCHHHHHHHHHHH
Confidence 88874 44588999999999876
No 147
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.06 E-value=64 Score=29.67 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=24.2
Q ss_pred CceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023156 19 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 19 ~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
.|+||.+|| |+++-++...+ .+++|++-|.+
T Consensus 73 ~D~vi~lGGDGT~L~aar~~~---~~~~PilGIN~ 104 (306)
T PRK03372 73 CELVLVLGGDGTILRAAELAR---AADVPVLGVNL 104 (306)
T ss_pred CCEEEEEcCCHHHHHHHHHhc---cCCCcEEEEec
Confidence 469999998 89898888763 46888877764
No 148
>KOG3198 consensus Signal recognition particle, subunit Srp19 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.56 E-value=1.4e+02 Score=24.43 Aligned_cols=60 Identities=20% Similarity=0.191 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCC-CCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHH
Q 023156 212 IVKRVHNILQQAKLPTAPPDT-MTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLY 281 (286)
Q Consensus 212 ~~~~i~~~l~~~glp~~l~~~-~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~ 281 (286)
...++.+.++.+|++..+... .-+.+| .+.|++|+.|.+. .|........+.+.+..-+.
T Consensus 45 ~a~eI~Dvl~~lgl~~~~E~~K~hPrD~---------~n~GRVRvqlk~e-dG~l~~~~~~sr~~~~~~~a 105 (152)
T KOG3198|consen 45 LAKEIADVLRALGLNCLLEPNKKHPRDF---------VNPGRVRVQLKNE-DGTLYVIAFISRKSLMLPIA 105 (152)
T ss_pred chhHHHHHHHHhCCcccccccccCchhc---------CCCceEEEEeecc-CCcEEeecchhHHHHHHHhh
Confidence 367899999999999876421 223333 3379999999986 89976655556666655443
No 149
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=30.52 E-value=1.2e+02 Score=29.04 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=23.6
Q ss_pred CceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccch
Q 023156 19 RCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTV 54 (286)
Q Consensus 19 ~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl 54 (286)
-+-||++||+.=..++-.+--..--|+|=+.|-|-+
T Consensus 94 i~Gvi~~GGs~GT~lat~aMr~LPiG~PKlmVST~A 129 (403)
T PF06792_consen 94 IDGVIGIGGSGGTALATAAMRALPIGFPKLMVSTMA 129 (403)
T ss_pred ccEEEEecCCccHHHHHHHHHhCCCCCCeEEEEccC
Confidence 349999999988887765532233455655665553
No 150
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=30.09 E-value=1.3e+02 Score=17.97 Aligned_cols=27 Identities=15% Similarity=0.155 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHH
Q 023156 213 VKRVHNILQQAKLPTAPPDTMTVEMFKSIMA 243 (286)
Q Consensus 213 ~~~i~~~l~~~glp~~l~~~~~~~~~~~~l~ 243 (286)
..++.+.+++.|+|++= +.+++++.+.
T Consensus 6 v~eLk~~l~~~gL~~~G----~K~~Li~Rl~ 32 (35)
T PF02037_consen 6 VAELKEELKERGLSTSG----KKAELIERLK 32 (35)
T ss_dssp HHHHHHHHHHTTS-STS----SHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCC----CHHHHHHHHH
Confidence 57888999999999863 4566666554
No 151
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=29.01 E-value=2e+02 Score=26.92 Aligned_cols=82 Identities=26% Similarity=0.333 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcce---eeecCCccccccc
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKT---GINHRLGKNLIGA 79 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~---~i~~~~~k~~~g~ 79 (286)
.+.++.+.+.+. +..-++-+|||++-+-.=.. ..++.|.+|..-=||... -|+|.+|-+ ++.. +| +..
T Consensus 240 D~~~l~~i~~~s---~k~G~iilGGGvpKh~~~~~-~l~~~G~dYaVqItta~~-~dGslSGA~p~EAvSW--GK--i~~ 310 (334)
T PRK03971 240 DIVKLNDLAITA---KETACIVLGGSLPKHSIINA-NLFRGGTDYAIYITTAMP-WDGSLSGAPPEEGVSW--GK--IKA 310 (334)
T ss_pred HHHHHHHHHhcc---CceEEEEECCchHHHHHHHH-hcccCCCCEEEEEeCCCC-CCCcccCCChhhhhcc--CC--ccC
Confidence 345555555533 23478899999998875443 234569998766666433 255555522 2222 12 222
Q ss_pred ccCcceeeeehHhh
Q 023156 80 FYQPQCVLVDTDTL 93 (286)
Q Consensus 80 ~~~P~~viiD~~~l 93 (286)
-..+..|+.|-.++
T Consensus 311 ~a~~v~V~~DATIv 324 (334)
T PRK03971 311 KADYVEIWADATLV 324 (334)
T ss_pred CCCeEEEEEehhhH
Confidence 23455567776554
No 152
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.96 E-value=76 Score=28.66 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=22.0
Q ss_pred CceEEEEcC-chHHHHHHHHHHHhhcCCcEEEec
Q 023156 19 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIP 51 (286)
Q Consensus 19 ~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VP 51 (286)
.|+||.+|| |+++.++...+ ..++|++-|-
T Consensus 43 ~d~vi~iGGDGT~L~aa~~~~---~~~~PilgIn 73 (272)
T PRK02231 43 AQLAIVIGGDGNMLGRARVLA---KYDIPLIGIN 73 (272)
T ss_pred CCEEEEECCcHHHHHHHHHhc---cCCCcEEEEe
Confidence 469999998 88888877662 3577776554
No 153
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=28.88 E-value=2e+02 Score=26.63 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhh-cCCcEEEeccchhhccccCcCcce---eeecCCcccccc
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYL-RGVSFIQIPTTVMAQVDSSVGGKT---GINHRLGKNLIG 78 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~-~gip~i~VPTTl~~~~das~g~k~---~i~~~~~k~~~g 78 (286)
.+.++.+.+.+.+ ..-++-+|||++-+-.-... .+. .|..|..-=||... -|+|.+|-+ ++.. +| +.
T Consensus 218 D~~~l~~~~~~a~---~~G~iilGGGvpKh~~~~~~-l~~~~G~dYaVqItta~~-~dGslSGA~~~EAvSW--GK--v~ 288 (316)
T PRK02301 218 DMTELMDICYEAE---RAGALLVGGGVPKNYILQSM-LVTPKAFDYAVQLTMDRP-ETGGLSGATLDEARSW--GK--LG 288 (316)
T ss_pred HHHHHHHHHhccC---ceeEEEECCchHHHHHHHHH-hccCCCCcEEEEEeCCCC-CCccccCCChhhhhhc--CC--cc
Confidence 4556666666553 34889999999999876652 233 26666555555332 255555522 2222 12 22
Q ss_pred cccCcceeeeehHhh
Q 023156 79 AFYQPQCVLVDTDTL 93 (286)
Q Consensus 79 ~~~~P~~viiD~~~l 93 (286)
.-..+..|+.|-.++
T Consensus 289 ~~a~~v~V~~DATi~ 303 (316)
T PRK02301 289 EDAKNVTVYGDATIT 303 (316)
T ss_pred CCCceEEEEEehhhH
Confidence 223555677776654
No 154
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.71 E-value=76 Score=28.96 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=23.4
Q ss_pred CceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023156 19 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 19 ~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
.|+||++|| |+++-+++..+ ..++|++-|-+
T Consensus 65 ~dlvi~lGGDGT~L~aa~~~~---~~~~PilGIN~ 96 (292)
T PRK01911 65 ADMVISIGGDGTFLRTATYVG---NSNIPILGINT 96 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhc---CCCCCEEEEec
Confidence 469999998 88888888763 35788776654
No 155
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.49 E-value=1.2e+02 Score=27.79 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=23.0
Q ss_pred CceEEEEcC-chHHHHHHHHHHHhhcCCcEEEecc
Q 023156 19 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 19 ~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
.|++|.+|| |+++-++...+ ..++|++-|-+
T Consensus 69 ~Dlvi~iGGDGTlL~aar~~~---~~~iPilGIN~ 100 (305)
T PRK02649 69 MKFAIVLGGDGTVLSAARQLA---PCGIPLLTINT 100 (305)
T ss_pred cCEEEEEeCcHHHHHHHHHhc---CCCCcEEEEeC
Confidence 469999998 88887777653 35788877753
No 156
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=27.32 E-value=2e+02 Score=25.07 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=26.1
Q ss_pred CCceEEEEcCchHHH-HHHHHHHHhhcCCcEEEeccchhh
Q 023156 18 RRCTFVALGGGVIGD-MCGYAAASYLRGVSFIQIPTTVMA 56 (286)
Q Consensus 18 r~d~iiavGGG~v~D-~ak~~A~~~~~gip~i~VPTTl~~ 56 (286)
+...+|++|+||++= ++++++.....++.+..|||+..+
T Consensus 19 ~dg~~IgLgsGST~~~l~~~L~~~~~~~~~itvVt~S~~~ 58 (220)
T PRK00702 19 EDGMIVGLGTGSTAAYFIDALGERVKEGLIIGGVPTSEAS 58 (220)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhhhccCCCEEEECCcHHH
Confidence 345789999999875 556665322223467888887653
No 157
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=27.30 E-value=1.2e+02 Score=29.37 Aligned_cols=45 Identities=20% Similarity=0.365 Sum_probs=25.8
Q ss_pred HHHHHHHHHHcCCC-CCc-eEEEEcCchHHHHHHH-----HHHHhhcCCcEE
Q 023156 4 LMKVFDKAIESRLD-RRC-TFVALGGGVIGDMCGY-----AAASYLRGVSFI 48 (286)
Q Consensus 4 v~~~~~~~~~~~~~-r~d-~iiavGGG~v~D~ak~-----~A~~~~~gip~i 48 (286)
..++++.+...+-. ..| +||+=||||.-|+.-| +-+.+...+|+|
T Consensus 172 ~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~rai~~~~~Pvi 223 (432)
T TIGR00237 172 VQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVARAIFLSKIPII 223 (432)
T ss_pred HHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHHHHHcCCCCEE
Confidence 34455555443321 134 6789999999998654 112234566665
No 158
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=27.00 E-value=1.1e+02 Score=29.74 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCCC-Cc-eEEEEcCchHHHHHHH
Q 023156 4 LMKVFDKAIESRLDR-RC-TFVALGGGVIGDMCGY 36 (286)
Q Consensus 4 v~~~~~~~~~~~~~r-~d-~iiavGGG~v~D~ak~ 36 (286)
..++++.+...+-.. .| +|||=||||+-|+--|
T Consensus 178 ~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~F 212 (440)
T COG1570 178 AEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAF 212 (440)
T ss_pred HHHHHHHHHHhhccCCCCEEEEecCcchHHHHhcc
Confidence 345555555443222 44 6899999999998544
No 159
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=26.91 E-value=58 Score=27.04 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=21.6
Q ss_pred HHHHHH-HHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchh
Q 023156 6 KVFDKA-IESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVM 55 (286)
Q Consensus 6 ~~~~~~-~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~ 55 (286)
+....+ .+.++| +||+=|| +|.++... .++|++.||.|..
T Consensus 24 ~~a~~~~~~~g~d---ViIsRG~-----ta~~lr~~--~~iPVV~I~~s~~ 64 (176)
T PF06506_consen 24 EEARQLLESEGAD---VIISRGG-----TAELLRKH--VSIPVVEIPISGF 64 (176)
T ss_dssp HHHHHHHTTTT-S---EEEEEHH-----HHHHHHCC---SS-EEEE---HH
T ss_pred HHHHHhhHhcCCe---EEEECCH-----HHHHHHHh--CCCCEEEECCCHh
Confidence 333444 445555 9998776 45666432 3899999999854
No 160
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=26.21 E-value=2.2e+02 Score=24.22 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCCCceEEEE-cCchHHHHHHHHHHHhhcCCcEEEec
Q 023156 5 MKVFDKAIESRLDRRCTFVAL-GGGVIGDMCGYAAASYLRGVSFIQIP 51 (286)
Q Consensus 5 ~~~~~~~~~~~~~r~d~iiav-GGG~v~D~ak~~A~~~~~gip~i~VP 51 (286)
.+++....+...++.|++|++ ++|..-++.+.+..+..+|.|+|.+-
T Consensus 96 ~~~f~~ql~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT 143 (196)
T PRK10886 96 DEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALT 143 (196)
T ss_pred HHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 344455555667788887766 55666777777766677899988763
No 161
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=24.91 E-value=52 Score=31.70 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=26.5
Q ss_pred CCceEEEEcCchHHHHHH-----HHHHHhhcCCcEEEeccch
Q 023156 18 RRCTFVALGGGVIGDMCG-----YAAASYLRGVSFIQIPTTV 54 (286)
Q Consensus 18 r~d~iiavGGG~v~D~ak-----~~A~~~~~gip~i~VPTTl 54 (286)
+.|++|..|||...|..+ ++..+...|.|++.+|-++
T Consensus 117 ~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsi 158 (426)
T PRK10017 117 GYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSV 158 (426)
T ss_pred hCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcC
Confidence 457999999999999644 2223346799988887553
No 162
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=24.81 E-value=1.4e+02 Score=29.74 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHH
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYA 37 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~ 37 (286)
+.+...++.+++.|++ +|| |||.++|+|+-+
T Consensus 142 ~e~~~~v~~lk~~G~~---~vv--G~~~~~~~A~~~ 172 (538)
T PRK15424 142 EDARGQINELKANGIE---AVV--GAGLITDLAEEA 172 (538)
T ss_pred HHHHHHHHHHHHCCCC---EEE--cCchHHHHHHHh
Confidence 4678889999999998 665 999999999876
No 163
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=24.74 E-value=2.5e+02 Score=25.97 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEeccchhhccccCcCcce---eeecCCccccccc
Q 023156 3 TLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPTTVMAQVDSSVGGKT---GINHRLGKNLIGA 79 (286)
Q Consensus 3 ~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPTTl~~~~das~g~k~---~i~~~~~k~~~g~ 79 (286)
.+.++.+.+.+.+ ..-++-+|||++-.-.=. +..++.|..|..-=||... -|+|.+|-+ ++.. +|- ..
T Consensus 218 D~~~l~~~~~~a~---k~G~iilGGGvpKh~~~~-~~~~~~G~DyaVqItta~~-~dGslSGA~~~EAvSW--GKv--~~ 288 (312)
T PRK01221 218 DEELLSDLVFSSK---KLGALIIGGGISKHHTIW-WNQFKDGLDYAVYITTAVE-YDGSLSGARPREAISW--GKI--KP 288 (312)
T ss_pred HHHHHHHHHhccC---ceEEEEECCCcchhHHHH-HHhhccCCCEEEEEeCCCC-CCCcccCCChhhhhcc--CCc--cC
Confidence 4556666666553 348899999998775533 2345568887766666433 255555522 2322 222 22
Q ss_pred ccCcceeeeehHhh
Q 023156 80 FYQPQCVLVDTDTL 93 (286)
Q Consensus 80 ~~~P~~viiD~~~l 93 (286)
-..+..|+.|-.++
T Consensus 289 ~a~~v~V~~DATI~ 302 (312)
T PRK01221 289 EAKHVTIYGDATII 302 (312)
T ss_pred CCceEEEEEehhhH
Confidence 23466677776654
No 164
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=24.58 E-value=4.1e+02 Score=22.05 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=32.9
Q ss_pred HHHHHHHHHhchh------ccCCeeEEEeecCCCcceE----------EcCCCCHHHHHHHHHHHh
Q 023156 235 VEMFKSIMAVDKK------VADGLLRLILLKGPLGNCV----------FTGDYDRKALDDTLYAFC 284 (286)
Q Consensus 235 ~~~~~~~l~~dkk------~~~~~~~~~l~~~~iG~~~----------~~~~v~~~~~~~~~~~~~ 284 (286)
.+++++.+.+--+ +.+|++.+.-... +|.|. +..++++|.+.++++++-
T Consensus 93 s~~l~~~l~~~lgi~~gett~DG~ftl~~v~C-lGaC~~AP~vmind~~~~~lt~e~l~eil~~~~ 157 (160)
T COG1905 93 SEALLKALEKKLGIKPGETTADGKFTLEPVEC-LGACGQAPVVMINDDVYGRLTPEKLEEILEKLK 157 (160)
T ss_pred hHHHHHHHHHHhCCCCCCcCCCCeEEEeeeee-ecccccCCEEEECCchhccCCHHHHHHHHHHHh
Confidence 3666777666444 4677777665566 77774 223578999999998763
No 165
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=24.33 E-value=2.1e+02 Score=27.12 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhchhc
Q 023156 213 VKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKV 248 (286)
Q Consensus 213 ~~~i~~~l~~~glp~~l~~~~~~~~~~~~l~~dkk~ 248 (286)
.+++.++.+.+|+|... ..-..+++++.+.+.+|.
T Consensus 313 ~~~~~~la~~lg~~~~~-~~~~~~~~~~~i~~l~~~ 347 (398)
T cd08178 313 KERYAEIARFLGLPGKT-DEEKVESLIKAIEELKKK 347 (398)
T ss_pred HHHHHHHHHHcCCCCCC-HHHHHHHHHHHHHHHHHH
Confidence 57888899999998432 112346678888887764
No 166
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=24.05 E-value=2.1e+02 Score=26.30 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHH
Q 023156 4 LMKVFDKAIESRLDRRCTFVALGGGVIG 31 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~ 31 (286)
..|+++++...+.+-+.+|+++|+|..+
T Consensus 170 ~~Ei~~q~~~~~~~~d~vv~~vGtGgt~ 197 (331)
T PRK03910 170 ALEIAQQLAEGGVDFDAVVVASGSGGTH 197 (331)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCcHHHH
Confidence 3456666654322122466777766643
No 167
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.91 E-value=1e+02 Score=28.14 Aligned_cols=30 Identities=30% Similarity=0.316 Sum_probs=21.4
Q ss_pred CceEEEEcC-chHHHHHHHHHHHhhcCCcEEEec
Q 023156 19 RCTFVALGG-GVIGDMCGYAAASYLRGVSFIQIP 51 (286)
Q Consensus 19 ~d~iiavGG-G~v~D~ak~~A~~~~~gip~i~VP 51 (286)
.|+||.+|| |+++-++..++ .+++|++-|-
T Consensus 69 ~D~vi~lGGDGT~L~aa~~~~---~~~~PilGIN 99 (296)
T PRK04539 69 CDLVAVLGGDGTFLSVAREIA---PRAVPIIGIN 99 (296)
T ss_pred CCEEEEECCcHHHHHHHHHhc---ccCCCEEEEe
Confidence 569999988 78887777653 3577776554
No 168
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=23.84 E-value=2.3e+02 Score=23.14 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=30.0
Q ss_pred cCCCCCceEEEEc-CchHHHHHHHHHHHhhcCCcEEEec
Q 023156 14 SRLDRRCTFVALG-GGVIGDMCGYAAASYLRGVSFIQIP 51 (286)
Q Consensus 14 ~~~~r~d~iiavG-GG~v~D~ak~~A~~~~~gip~i~VP 51 (286)
..+++.|++|++- +|..-|+...+...-.+|.|+|.|-
T Consensus 97 ~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT 135 (177)
T cd05006 97 ALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALT 135 (177)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4577889988886 7888888888876677899888874
No 169
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=22.60 E-value=1.5e+02 Score=28.38 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHhchhccCCeeEEEeecCCCcceEEcCCCCHHHHHHHHHH
Q 023156 212 IVKRVHNILQQAKLPTAPPDTMTVEMFKSIMAVDKKVADGLLRLILLKGPLGNCVFTGDYDRKALDDTLYA 282 (286)
Q Consensus 212 ~~~~i~~~l~~~glp~~l~~~~~~~~~~~~l~~dkk~~~~~~~~~l~~~~iG~~~~~~~v~~~~~~~~~~~ 282 (286)
.+..+...|+++|+.+++-+..++|.+.+++... -+.+..+. ||+.... -+|-|.+.++.++
T Consensus 114 T~~lf~~tl~~~Gi~v~fvd~~d~~~~~~aI~~n-------Tkavf~Et-igNP~~~-v~Die~ia~iAh~ 175 (426)
T COG2873 114 TYNLFSHTLKRLGIEVRFVDPDDPENFEAAIDEN-------TKAVFAET-IGNPGLD-VLDIEAIAEIAHR 175 (426)
T ss_pred hHHHHHHHHHhcCcEEEEeCCCCHHHHHHHhCcc-------cceEEEEe-ccCCCcc-ccCHHHHHHHHHH
Confidence 4667777889999999987777788887766543 24677887 9998764 5677777776553
No 170
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=22.08 E-value=1.9e+02 Score=26.82 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHH-cCCCCCceEEEEcCchHHHHHHHHHHHhh---cCCcEEEec
Q 023156 1 MDTLMKVFDKAIE-SRLDRRCTFVALGGGVIGDMCGYAAASYL---RGVSFIQIP 51 (286)
Q Consensus 1 ~~~v~~~~~~~~~-~~~~r~d~iiavGGG~v~D~ak~~A~~~~---~gip~i~VP 51 (286)
++.+.|+.+++.+ ..+| .+|+|.|+|.+. |++++ .+. +..++|-||
T Consensus 165 v~~a~Ei~~Q~~~~~~fD--~vVva~gs~gT~--AGl~~-g~~~~~~~~~ViG~~ 214 (323)
T COG2515 165 VRLALEIAEQAEQLLKFD--SVVVAPGSGGTH--AGLLV-GLAQLGPDVEVIGID 214 (323)
T ss_pred HHHHHHHHHHHhhccCCC--EEEEeCCCcchH--HHHHH-HhhhccCCCceEEEe
No 171
>PRK13937 phosphoheptose isomerase; Provisional
Probab=21.77 E-value=2.8e+02 Score=23.19 Aligned_cols=38 Identities=8% Similarity=0.043 Sum_probs=29.3
Q ss_pred cCCCCCceEEEEc-CchHHHHHHHHHHHhhcCCcEEEec
Q 023156 14 SRLDRRCTFVALG-GGVIGDMCGYAAASYLRGVSFIQIP 51 (286)
Q Consensus 14 ~~~~r~d~iiavG-GG~v~D~ak~~A~~~~~gip~i~VP 51 (286)
...+..|++|++- +|..-++.+.+-....+|.|++.|-
T Consensus 102 ~~~~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT 140 (188)
T PRK13937 102 ALGRPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLT 140 (188)
T ss_pred hhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 3466778888885 7788888888776678899888774
No 172
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=21.29 E-value=2.4e+02 Score=20.09 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEec
Q 023156 2 DTLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIP 51 (286)
Q Consensus 2 ~~v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VP 51 (286)
+.+.++.+.+++.|+. +.+-.++.++.--=+. +-+.|+||+.|.
T Consensus 16 ~~a~~l~~~L~~~gi~---v~~d~~~~~~~k~~~~---a~~~g~p~~iii 59 (94)
T PF03129_consen 16 EYAQELANKLRKAGIR---VELDDSDKSLGKQIKY---ADKLGIPFIIII 59 (94)
T ss_dssp HHHHHHHHHHHHTTSE---EEEESSSSTHHHHHHH---HHHTTESEEEEE
T ss_pred HHHHHHHHHHHHCCCE---EEEECCCCchhHHHHH---HhhcCCeEEEEE
Confidence 3467889999999987 8888888776644444 356899999885
No 173
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=20.96 E-value=94 Score=25.31 Aligned_cols=14 Identities=7% Similarity=0.171 Sum_probs=7.0
Q ss_pred HHHHHHHHHHcCCC
Q 023156 4 LMKVFDKAIESRLD 17 (286)
Q Consensus 4 v~~~~~~~~~~~~~ 17 (286)
+.++++.+++.|.+
T Consensus 80 ~~~lve~lre~G~~ 93 (143)
T COG2185 80 VPGLVEALREAGVE 93 (143)
T ss_pred HHHHHHHHHHhCCc
Confidence 44455555555544
No 174
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=20.48 E-value=2e+02 Score=26.55 Aligned_cols=43 Identities=5% Similarity=-0.218 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCCCCceEEEEcCchHHHHHHHHHHHhhcCCcEEEecc
Q 023156 4 LMKVFDKAIESRLDRRCTFVALGGGVIGDMCGYAAASYLRGVSFIQIPT 52 (286)
Q Consensus 4 v~~~~~~~~~~~~~r~d~iiavGGG~v~D~ak~~A~~~~~gip~i~VPT 52 (286)
..++.+.+++.++| +|++.++......++. ....++|++.+.|
T Consensus 93 ~~~l~~~l~~~~pD---~Vi~~~~~~~~~~~~~---~~~~~ip~~~~~t 135 (380)
T PRK13609 93 RKRLKLLLQAEKPD---IVINTFPIIAVPELKK---QTGISIPTYNVLT 135 (380)
T ss_pred HHHHHHHHHHhCcC---EEEEcChHHHHHHHHH---hcCCCCCeEEEeC
Confidence 35677888888777 9999888776554433 2345688886655
Done!