Query 023157
Match_columns 286
No_of_seqs 146 out of 1482
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 08:50:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 Predicted ATP-dependen 100.0 1.1E-51 2.5E-56 314.8 24.2 285 2-286 116-400 (400)
2 KOG0331 ATP-dependent RNA heli 100.0 3.7E-48 8E-53 325.2 26.3 283 2-285 186-474 (519)
3 KOG0330 ATP-dependent RNA heli 100.0 8.3E-48 1.8E-52 305.5 21.5 276 1-277 149-425 (476)
4 PTZ00110 helicase; Provisional 100.0 1.9E-46 4E-51 329.4 30.0 283 2-285 224-510 (545)
5 COG0513 SrmB Superfamily II DN 100.0 2.1E-46 4.6E-51 326.1 29.4 275 2-276 120-398 (513)
6 PRK04837 ATP-dependent RNA hel 100.0 3.2E-46 6.9E-51 321.3 29.5 278 3-281 105-384 (423)
7 PRK10590 ATP-dependent RNA hel 100.0 1.3E-45 2.9E-50 319.4 29.5 274 2-276 96-369 (456)
8 PRK11776 ATP-dependent RNA hel 100.0 1.5E-45 3.3E-50 320.2 29.9 267 9-277 101-367 (460)
9 PRK11192 ATP-dependent RNA hel 100.0 3.8E-45 8.3E-50 315.9 30.9 275 2-276 94-369 (434)
10 PLN00206 DEAD-box ATP-dependen 100.0 3.5E-45 7.5E-50 320.4 30.2 280 3-284 218-500 (518)
11 PTZ00424 helicase 45; Provisio 100.0 5.1E-45 1.1E-49 312.9 30.5 284 3-286 118-401 (401)
12 KOG0326 ATP-dependent RNA heli 100.0 9.5E-47 2.1E-51 292.6 17.6 279 3-283 175-453 (459)
13 PRK04537 ATP-dependent RNA hel 100.0 6.9E-45 1.5E-49 320.5 29.0 276 2-278 105-383 (572)
14 PRK11634 ATP-dependent RNA hel 100.0 7.3E-45 1.6E-49 322.1 28.8 270 9-279 103-372 (629)
15 KOG0333 U5 snRNP-like RNA heli 100.0 6.5E-45 1.4E-49 298.9 25.6 281 3-284 344-650 (673)
16 PRK01297 ATP-dependent RNA hel 100.0 6.2E-44 1.4E-48 310.9 31.1 273 2-275 183-458 (475)
17 KOG0336 ATP-dependent RNA heli 100.0 1.7E-42 3.7E-47 277.3 22.1 278 6-284 318-597 (629)
18 KOG0339 ATP-dependent RNA heli 100.0 4.8E-42 1E-46 281.1 24.7 284 2-285 317-601 (731)
19 KOG0335 ATP-dependent RNA heli 100.0 4.3E-42 9.2E-47 284.2 23.4 281 3-284 174-469 (482)
20 KOG0345 ATP-dependent RNA heli 100.0 1.5E-41 3.2E-46 275.9 23.9 260 8-268 107-373 (567)
21 KOG0342 ATP-dependent RNA heli 100.0 3.3E-41 7.2E-46 275.3 22.9 264 4-268 177-446 (543)
22 KOG0343 RNA Helicase [RNA proc 100.0 7.1E-41 1.5E-45 276.8 23.9 275 2-279 162-442 (758)
23 KOG0327 Translation initiation 100.0 6.5E-41 1.4E-45 266.4 22.1 282 2-286 115-397 (397)
24 KOG0338 ATP-dependent RNA heli 100.0 2.3E-41 4.9E-46 277.3 19.9 269 2-270 273-544 (691)
25 KOG0332 ATP-dependent RNA heli 100.0 1.9E-40 4.1E-45 262.4 19.7 274 2-278 181-463 (477)
26 KOG0340 ATP-dependent RNA heli 100.0 1.1E-39 2.3E-44 256.6 20.7 279 2-281 96-383 (442)
27 KOG0341 DEAD-box protein abstr 100.0 1.6E-40 3.4E-45 264.4 13.9 275 9-285 280-555 (610)
28 KOG0346 RNA helicase [RNA proc 100.0 5.9E-38 1.3E-42 253.1 20.0 265 9-274 123-425 (569)
29 PLN03137 ATP-dependent DNA hel 100.0 2.7E-37 5.8E-42 279.3 26.4 257 8-268 523-796 (1195)
30 TIGR00614 recQ_fam ATP-depende 100.0 3.3E-37 7.2E-42 267.8 25.7 256 7-268 73-342 (470)
31 TIGR03817 DECH_helic helicase/ 100.0 3.5E-37 7.7E-42 278.2 24.5 265 8-279 107-408 (742)
32 KOG4284 DEAD box protein [Tran 100.0 6.5E-37 1.4E-41 257.6 21.9 261 6-267 119-388 (980)
33 PRK11057 ATP-dependent DNA hel 100.0 4.3E-36 9.4E-41 267.4 26.4 254 8-268 88-352 (607)
34 TIGR01389 recQ ATP-dependent D 100.0 2.5E-36 5.4E-41 269.5 24.7 256 8-268 76-340 (591)
35 KOG0347 RNA helicase [RNA proc 100.0 1.1E-37 2.5E-42 257.8 14.6 272 2-275 284-586 (731)
36 COG0514 RecQ Superfamily II DN 100.0 8.2E-37 1.8E-41 261.6 20.0 262 7-272 79-350 (590)
37 KOG0337 ATP-dependent RNA heli 100.0 6.4E-37 1.4E-41 245.9 16.0 277 2-279 111-388 (529)
38 KOG0334 RNA helicase [RNA proc 100.0 3.8E-36 8.2E-41 265.8 19.2 283 2-284 459-745 (997)
39 KOG0348 ATP-dependent RNA heli 100.0 1.3E-35 2.8E-40 244.9 18.9 262 10-271 241-566 (708)
40 PRK09751 putative ATP-dependen 100.0 1.1E-33 2.5E-38 265.1 28.3 267 7-277 75-405 (1490)
41 KOG0350 DEAD-box ATP-dependent 100.0 1.4E-34 3.1E-39 237.0 18.6 272 1-273 235-554 (620)
42 COG1111 MPH1 ERCC4-like helica 100.0 1.2E-33 2.6E-38 232.8 23.6 254 4-259 78-481 (542)
43 TIGR00580 mfd transcription-re 100.0 3.1E-33 6.6E-38 255.4 26.2 242 3-259 522-770 (926)
44 PRK13767 ATP-dependent helicas 100.0 5.5E-33 1.2E-37 255.8 25.9 246 9-258 124-397 (876)
45 PRK10689 transcription-repair 100.0 1.5E-32 3.3E-37 255.8 27.8 241 4-259 672-919 (1147)
46 PRK10917 ATP-dependent DNA hel 100.0 1.8E-32 3.9E-37 246.8 27.3 243 2-258 331-588 (681)
47 KOG0344 ATP-dependent RNA heli 100.0 1.1E-33 2.4E-38 236.3 15.8 279 6-284 236-520 (593)
48 PRK02362 ski2-like helicase; P 100.0 7.6E-33 1.6E-37 252.4 22.8 266 8-281 93-418 (737)
49 PRK00254 ski2-like helicase; P 100.0 4.7E-32 1E-36 246.6 22.7 243 7-260 93-389 (720)
50 TIGR00643 recG ATP-dependent D 100.0 2.1E-31 4.5E-36 238.4 26.4 242 2-257 305-564 (630)
51 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1E-30 2.2E-35 233.1 25.7 235 5-249 109-380 (844)
52 COG1201 Lhr Lhr-like helicases 100.0 1.3E-31 2.9E-36 237.6 19.7 251 3-258 95-361 (814)
53 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.1E-30 4.5E-35 234.6 24.0 243 5-262 70-339 (819)
54 PRK01172 ski2-like helicase; P 100.0 1.7E-30 3.6E-35 235.5 20.5 254 7-272 90-389 (674)
55 PHA02653 RNA helicase NPH-II; 100.0 6.1E-30 1.3E-34 226.5 23.3 241 8-264 252-519 (675)
56 PRK11664 ATP-dependent RNA hel 100.0 3.7E-30 8.1E-35 233.4 21.9 244 4-262 72-342 (812)
57 TIGR01587 cas3_core CRISPR-ass 100.0 3.7E-30 8E-35 217.6 15.6 226 31-261 94-338 (358)
58 COG1200 RecG RecG-like helicas 100.0 8.9E-29 1.9E-33 212.2 22.5 253 2-268 332-601 (677)
59 KOG0351 ATP-dependent DNA heli 100.0 7.3E-29 1.6E-33 224.3 21.5 262 6-269 325-602 (941)
60 PHA02558 uvsW UvsW helicase; P 100.0 5.1E-29 1.1E-33 217.8 19.3 226 10-250 187-443 (501)
61 KOG0329 ATP-dependent RNA heli 100.0 7E-30 1.5E-34 193.2 10.8 237 9-281 139-378 (387)
62 KOG0352 ATP-dependent DNA heli 100.0 2.9E-29 6.3E-34 202.6 13.4 254 8-267 84-370 (641)
63 PRK13766 Hef nuclease; Provisi 100.0 1.2E-27 2.5E-32 220.7 25.1 249 10-260 87-480 (773)
64 COG1202 Superfamily II helicas 100.0 1.4E-28 3E-33 205.4 15.6 246 6-259 286-553 (830)
65 COG1204 Superfamily II helicas 100.0 2.8E-28 6E-33 218.8 17.5 249 6-258 100-407 (766)
66 PRK11131 ATP-dependent RNA hel 100.0 1.6E-27 3.5E-32 220.6 21.4 222 30-262 162-414 (1294)
67 TIGR00603 rad25 DNA repair hel 100.0 1E-26 2.2E-31 205.6 21.4 241 9-265 326-613 (732)
68 COG1197 Mfd Transcription-repa 99.9 2.5E-26 5.4E-31 207.5 21.7 243 2-259 664-913 (1139)
69 PRK09401 reverse gyrase; Revie 99.9 2E-26 4.3E-31 215.6 21.9 231 2-245 144-430 (1176)
70 TIGR03158 cas3_cyano CRISPR-as 99.9 8.3E-26 1.8E-30 189.5 22.3 204 30-244 112-357 (357)
71 KOG0349 Putative DEAD-box RNA 99.9 1.3E-26 2.9E-31 187.8 16.1 272 10-281 318-669 (725)
72 PRK09200 preprotein translocas 99.9 3.9E-26 8.5E-31 203.8 20.3 124 137-262 411-544 (790)
73 TIGR00963 secA preprotein tran 99.9 1.1E-25 2.4E-30 198.1 21.7 123 139-263 390-521 (745)
74 PRK14701 reverse gyrase; Provi 99.9 4.7E-26 1E-30 217.5 20.5 243 9-263 152-460 (1638)
75 KOG0354 DEAD-box like helicase 99.9 5.7E-26 1.2E-30 197.7 18.7 108 151-260 412-530 (746)
76 TIGR01967 DEAH_box_HrpA ATP-de 99.9 2.9E-26 6.2E-31 213.0 17.7 245 5-263 132-408 (1283)
77 TIGR03714 secA2 accessory Sec 99.9 1.5E-25 3.3E-30 198.3 21.5 122 138-262 408-540 (762)
78 PRK12898 secA preprotein trans 99.9 1.4E-25 3.1E-30 196.2 20.7 169 88-261 410-588 (656)
79 PRK04914 ATP-dependent helicas 99.9 2.8E-25 6.1E-30 202.8 21.8 137 139-275 480-619 (956)
80 TIGR00595 priA primosomal prot 99.9 1.8E-24 3.9E-29 188.0 22.5 252 3-264 44-386 (505)
81 COG1205 Distinct helicase fami 99.9 6.2E-25 1.4E-29 199.9 20.1 261 9-272 145-437 (851)
82 TIGR01054 rgy reverse gyrase. 99.9 3.1E-24 6.8E-29 201.2 23.9 215 3-230 143-408 (1171)
83 KOG0952 DNA/RNA helicase MER3/ 99.9 1.4E-24 3.1E-29 192.2 17.2 256 6-269 189-501 (1230)
84 KOG0353 ATP-dependent DNA heli 99.9 2E-24 4.3E-29 172.8 14.9 257 7-264 156-472 (695)
85 PRK05580 primosome assembly pr 99.9 1.9E-23 4.1E-28 187.9 21.8 253 3-267 209-557 (679)
86 KOG0951 RNA helicase BRR2, DEA 99.9 2E-24 4.4E-29 193.8 14.1 261 4-269 387-712 (1674)
87 KOG0947 Cytoplasmic exosomal R 99.9 1.6E-23 3.5E-28 183.8 15.8 238 13-259 368-723 (1248)
88 COG1061 SSL2 DNA or RNA helica 99.9 4.8E-23 1.1E-27 177.0 18.0 209 32-246 123-376 (442)
89 COG4098 comFA Superfamily II D 99.9 1.2E-21 2.6E-26 154.7 22.9 240 9-266 170-423 (441)
90 COG1643 HrpA HrpA-like helicas 99.9 2.6E-22 5.6E-27 180.1 14.1 226 29-262 137-390 (845)
91 KOG0948 Nuclear exosomal RNA h 99.9 1.6E-22 3.6E-27 173.7 11.4 236 12-259 199-539 (1041)
92 PRK12904 preprotein translocas 99.9 5.7E-21 1.2E-25 170.7 21.5 256 1-263 142-577 (830)
93 PRK12906 secA preprotein trans 99.9 1.3E-21 2.8E-26 174.0 17.1 125 137-263 423-557 (796)
94 KOG0950 DNA polymerase theta/e 99.9 6.1E-22 1.3E-26 174.6 14.8 258 2-266 290-618 (1008)
95 PRK09694 helicase Cas3; Provis 99.9 3.6E-21 7.8E-26 175.1 19.3 213 32-248 411-664 (878)
96 KOG0922 DEAH-box RNA helicase 99.9 1.9E-21 4E-26 166.0 16.3 222 31-261 140-392 (674)
97 PRK05298 excinuclease ABC subu 99.9 2.2E-21 4.9E-26 173.9 17.3 144 139-283 431-590 (652)
98 TIGR00631 uvrb excinuclease AB 99.9 1.1E-20 2.3E-25 168.4 20.8 129 139-268 427-562 (655)
99 PRK13104 secA preprotein trans 99.9 1.7E-20 3.7E-25 167.9 21.3 123 139-263 429-591 (896)
100 cd00079 HELICc Helicase superf 99.9 8.5E-21 1.9E-25 137.4 14.0 118 138-255 12-131 (131)
101 PRK11448 hsdR type I restricti 99.8 4.1E-20 8.8E-25 172.7 17.9 214 31-248 511-802 (1123)
102 COG0556 UvrB Helicase subunit 99.8 1.4E-20 3.1E-25 156.7 13.0 175 86-268 386-566 (663)
103 PLN03142 Probable chromatin-re 99.8 3.7E-19 8E-24 163.7 22.2 120 140-259 473-599 (1033)
104 COG4581 Superfamily II RNA hel 99.8 1.2E-19 2.7E-24 164.4 16.9 239 12-259 193-537 (1041)
105 PF00271 Helicase_C: Helicase 99.8 2.1E-20 4.5E-25 122.4 7.1 78 170-247 1-78 (78)
106 COG1203 CRISPR-associated heli 99.8 2.2E-19 4.7E-24 163.3 15.0 228 32-263 311-554 (733)
107 PRK13107 preprotein translocas 99.8 8.6E-19 1.9E-23 156.8 17.8 122 139-262 434-594 (908)
108 KOG0923 mRNA splicing factor A 99.8 1.8E-18 3.9E-23 147.3 14.2 220 31-259 355-606 (902)
109 PRK12900 secA preprotein trans 99.8 2E-18 4.3E-23 155.3 14.7 171 87-262 534-714 (1025)
110 KOG0385 Chromatin remodeling c 99.8 1.1E-17 2.3E-22 144.8 17.9 121 139-259 472-599 (971)
111 KOG0926 DEAH-box RNA helicase 99.8 1.7E-18 3.6E-23 150.3 12.3 241 31-279 349-722 (1172)
112 COG1198 PriA Primosomal protei 99.8 1.4E-17 3E-22 147.9 16.5 258 2-268 263-612 (730)
113 KOG0920 ATP-dependent RNA heli 99.7 3.6E-17 7.7E-22 147.1 13.8 244 31-279 264-567 (924)
114 KOG1123 RNA polymerase II tran 99.7 1.9E-16 4E-21 131.5 16.7 229 30-269 389-663 (776)
115 smart00490 HELICc helicase sup 99.7 1.9E-17 4.2E-22 109.5 7.8 81 167-247 2-82 (82)
116 KOG0924 mRNA splicing factor A 99.7 2.6E-16 5.6E-21 134.9 15.0 220 31-259 445-697 (1042)
117 KOG4150 Predicted ATP-dependen 99.7 1.2E-15 2.7E-20 128.5 16.5 265 18-284 371-667 (1034)
118 PRK12899 secA preprotein trans 99.7 6.9E-15 1.5E-19 132.4 18.5 122 139-263 553-685 (970)
119 COG4096 HsdR Type I site-speci 99.7 1.2E-15 2.6E-20 134.0 12.7 208 31-246 256-525 (875)
120 KOG0384 Chromodomain-helicase 99.7 4.9E-15 1.1E-19 134.3 16.8 116 151-266 698-820 (1373)
121 KOG0925 mRNA splicing factor A 99.6 5.4E-15 1.2E-19 122.4 14.0 210 36-259 141-387 (699)
122 PRK12326 preprotein translocas 99.6 2.5E-14 5.4E-19 125.8 18.8 121 139-262 412-550 (764)
123 COG1110 Reverse gyrase [DNA re 99.6 1.9E-14 4.1E-19 128.8 17.8 206 8-230 155-416 (1187)
124 KOG0953 Mitochondrial RNA heli 99.6 8.9E-15 1.9E-19 122.9 12.2 223 8-258 238-476 (700)
125 PRK12903 secA preprotein trans 99.6 5.2E-14 1.1E-18 125.6 17.0 120 139-261 411-541 (925)
126 TIGR00348 hsdR type I site-spe 99.6 1.7E-13 3.6E-18 123.9 20.3 94 152-246 514-634 (667)
127 cd00268 DEADc DEAD-box helicas 99.6 2.6E-14 5.6E-19 111.4 12.4 112 3-114 91-202 (203)
128 PRK13103 secA preprotein trans 99.6 8E-14 1.7E-18 125.4 16.4 121 139-262 434-594 (913)
129 KOG0387 Transcription-coupled 99.6 4.1E-13 9E-18 117.3 19.0 125 139-263 531-662 (923)
130 KOG0949 Predicted helicase, DE 99.5 1.9E-13 4.2E-18 121.7 15.5 81 178-259 964-1048(1330)
131 PF06862 DUF1253: Protein of u 99.5 8.7E-12 1.9E-16 105.2 22.8 237 31-267 131-423 (442)
132 KOG0389 SNF2 family DNA-depend 99.5 5E-13 1.1E-17 116.7 13.4 122 139-260 762-889 (941)
133 PF00270 DEAD: DEAD/DEAH box h 99.4 9.1E-13 2E-17 99.6 10.3 97 4-100 67-166 (169)
134 CHL00122 secA preprotein trans 99.4 1.6E-11 3.5E-16 110.4 17.1 68 150-219 422-491 (870)
135 KOG0390 DNA repair protein, SN 99.4 4.9E-11 1.1E-15 106.3 19.9 100 160-259 603-707 (776)
136 PRK14873 primosome assembly pr 99.4 4.9E-11 1.1E-15 106.9 17.7 250 3-267 207-546 (665)
137 COG4889 Predicted helicase [Ge 99.4 5.1E-13 1.1E-17 118.0 4.2 217 31-247 280-573 (1518)
138 KOG1000 Chromatin remodeling p 99.3 1.5E-10 3.3E-15 96.6 18.1 121 151-271 491-617 (689)
139 TIGR02562 cas3_yersinia CRISPR 99.3 1E-11 2.2E-16 113.3 11.9 91 155-248 759-881 (1110)
140 KOG0951 RNA helicase BRR2, DEA 99.3 9.6E-11 2.1E-15 107.3 17.4 246 2-267 1208-1502(1674)
141 PRK12902 secA preprotein trans 99.3 1.7E-10 3.8E-15 103.8 17.8 79 139-219 424-506 (939)
142 KOG0392 SNF2 family DNA-depend 99.3 6.1E-11 1.3E-15 108.2 14.9 122 139-260 1311-1455(1549)
143 PRK12901 secA preprotein trans 99.3 6.7E-11 1.5E-15 107.6 14.3 170 88-262 565-744 (1112)
144 KOG0386 Chromatin remodeling c 99.2 2.8E-10 6E-15 102.3 10.6 121 139-259 711-836 (1157)
145 smart00487 DEXDc DEAD-like hel 99.0 7.3E-09 1.6E-13 80.0 12.4 106 13-118 86-192 (201)
146 TIGR01407 dinG_rel DnaQ family 99.0 2.6E-08 5.7E-13 93.3 17.7 128 143-272 666-829 (850)
147 cd00046 DEXDc DEAD-like helica 98.9 2E-08 4.4E-13 73.0 10.3 88 9-96 57-144 (144)
148 KOG0391 SNF2 family DNA-depend 98.9 2E-08 4.4E-13 91.9 12.0 122 139-260 1261-1388(1958)
149 PRK08074 bifunctional ATP-depe 98.8 1.6E-07 3.4E-12 88.6 16.3 122 151-272 751-908 (928)
150 PF13307 Helicase_C_2: Helicas 98.8 3.3E-08 7.1E-13 74.2 9.0 112 145-259 3-150 (167)
151 TIGR00596 rad1 DNA repair prot 98.8 1.9E-07 4.2E-12 85.6 15.5 66 32-97 8-73 (814)
152 PRK07246 bifunctional ATP-depe 98.8 3.5E-07 7.6E-12 84.9 16.9 118 151-272 646-798 (820)
153 COG1199 DinG Rad3-related DNA 98.8 2.2E-07 4.7E-12 85.2 15.1 131 139-273 467-633 (654)
154 PRK11747 dinG ATP-dependent DN 98.7 6E-07 1.3E-11 82.2 16.4 114 141-259 525-674 (697)
155 KOG2340 Uncharacterized conser 98.7 1.7E-07 3.6E-12 79.5 10.3 236 31-267 385-676 (698)
156 PF02399 Herpes_ori_bp: Origin 98.6 3.5E-06 7.6E-11 76.0 17.0 218 32-259 122-388 (824)
157 KOG0388 SNF2 family DNA-depend 98.6 2.6E-07 5.7E-12 81.0 8.3 122 139-260 1029-1155(1185)
158 COG0553 HepA Superfamily II DN 98.5 1.3E-06 2.8E-11 82.9 12.9 122 139-260 693-823 (866)
159 TIGR00604 rad3 DNA repair heli 98.5 6.3E-06 1.4E-10 76.0 16.5 116 143-259 514-674 (705)
160 COG0610 Type I site-specific r 98.5 1.3E-05 2.7E-10 75.9 17.9 47 199-246 590-636 (962)
161 TIGR03117 cas_csf4 CRISPR-asso 98.5 1.8E-05 4E-10 70.9 17.1 115 141-258 460-616 (636)
162 KOG0921 Dosage compensation co 98.4 7.7E-07 1.7E-11 80.0 7.4 107 152-259 643-774 (1282)
163 KOG1015 Transcription regulato 98.3 4.7E-06 1E-10 75.6 9.9 119 139-257 1127-1273(1567)
164 COG0653 SecA Preprotein transl 98.3 1.8E-06 3.9E-11 78.2 6.9 166 88-259 366-545 (822)
165 PF07652 Flavi_DEAD: Flaviviru 98.2 5.5E-06 1.2E-10 59.1 6.2 67 31-99 72-139 (148)
166 PF04851 ResIII: Type III rest 98.1 3.9E-06 8.5E-11 64.0 4.4 64 29-97 109-183 (184)
167 KOG4439 RNA polymerase II tran 98.0 5.6E-05 1.2E-09 66.8 10.7 104 151-254 745-851 (901)
168 smart00492 HELICc3 helicase su 98.0 6.7E-05 1.5E-09 54.4 9.3 70 180-249 25-128 (141)
169 smart00491 HELICc2 helicase su 98.0 4.9E-05 1.1E-09 55.2 8.5 93 165-257 4-137 (142)
170 KOG1002 Nucleotide excision re 97.7 0.00039 8.4E-09 59.3 9.9 108 153-260 639-750 (791)
171 PF13871 Helicase_C_4: Helicas 97.6 0.00025 5.4E-09 57.0 7.4 67 192-258 51-126 (278)
172 PF00176 SNF2_N: SNF2 family N 97.5 0.00013 2.7E-09 60.3 4.2 88 9-99 85-175 (299)
173 KOG1016 Predicted DNA helicase 97.3 0.0016 3.4E-08 58.7 8.4 116 152-267 719-855 (1387)
174 PRK14873 primosome assembly pr 96.9 0.01 2.3E-07 54.2 10.4 89 139-228 173-265 (665)
175 PRK10917 ATP-dependent DNA hel 96.7 0.014 2.9E-07 54.1 10.2 76 151-226 309-389 (681)
176 PRK05580 primosome assembly pr 96.7 0.021 4.5E-07 52.8 11.1 78 151-229 189-267 (679)
177 TIGR00595 priA primosomal prot 96.7 0.013 2.8E-07 52.1 9.2 77 151-228 24-101 (505)
178 PF13872 AAA_34: P-loop contai 96.6 0.0036 7.9E-08 50.7 4.8 68 31-99 136-223 (303)
179 KOG0952 DNA/RNA helicase MER3/ 96.3 0.0016 3.5E-08 60.5 1.2 183 9-200 1001-1203(1230)
180 TIGR00643 recG ATP-dependent D 96.3 0.034 7.3E-07 51.1 9.5 76 151-226 283-363 (630)
181 COG1198 PriA Primosomal protei 96.2 0.023 4.9E-07 52.2 8.0 87 139-226 230-319 (730)
182 COG1110 Reverse gyrase [DNA re 96.2 0.018 3.9E-07 53.9 7.3 73 139-211 112-190 (1187)
183 PF14617 CMS1: U3-containing 9 96.0 0.015 3.3E-07 46.2 5.1 57 10-66 154-212 (252)
184 PF07517 SecA_DEAD: SecA DEAD- 95.8 0.01 2.2E-07 47.8 3.7 65 2-68 139-210 (266)
185 TIGR00580 mfd transcription-re 95.8 0.071 1.5E-06 50.9 9.6 76 151-226 499-579 (926)
186 COG1200 RecG RecG-like helicas 95.8 0.1 2.2E-06 47.1 9.8 76 151-226 310-390 (677)
187 KOG0391 SNF2 family DNA-depend 95.8 0.021 4.6E-07 54.1 5.8 88 7-99 688-778 (1958)
188 KOG1133 Helicase of the DEAD s 95.6 0.98 2.1E-05 41.1 15.2 113 143-259 621-780 (821)
189 KOG0701 dsRNA-specific nucleas 95.6 0.0052 1.1E-07 60.4 1.2 93 154-246 294-398 (1606)
190 PRK10689 transcription-repair 95.3 0.076 1.6E-06 51.9 8.0 76 151-226 648-728 (1147)
191 KOG1002 Nucleotide excision re 95.0 0.045 9.7E-07 47.3 4.9 84 8-98 256-356 (791)
192 COG1197 Mfd Transcription-repa 95.0 0.12 2.6E-06 49.5 8.0 76 151-226 642-722 (1139)
193 TIGR03117 cas_csf4 CRISPR-asso 94.8 0.03 6.5E-07 50.8 3.7 40 30-69 181-220 (636)
194 COG0513 SrmB Superfamily II DN 94.4 0.23 5E-06 44.5 8.1 68 155-226 102-180 (513)
195 PF06733 DEAD_2: DEAD_2; Inte 94.2 0.022 4.8E-07 43.0 1.2 40 30-70 118-160 (174)
196 KOG4439 RNA polymerase II tran 94.1 0.026 5.6E-07 50.7 1.5 83 9-97 410-502 (901)
197 PRK14701 reverse gyrase; Provi 94.0 0.28 6.2E-06 49.7 8.6 61 151-211 121-187 (1638)
198 TIGR00614 recQ_fam ATP-depende 93.9 1.1 2.4E-05 39.8 11.5 75 152-226 51-133 (470)
199 cd00268 DEADc DEAD-box helicas 93.9 2.1 4.5E-05 33.0 11.9 74 151-228 68-151 (203)
200 KOG0331 ATP-dependent RNA heli 93.6 0.76 1.6E-05 40.6 9.5 90 152-245 165-272 (519)
201 KOG1001 Helicase-like transcri 93.5 0.011 2.5E-07 53.8 -1.7 102 153-254 540-643 (674)
202 KOG1513 Nuclear helicase MOP-3 93.4 0.071 1.5E-06 48.8 3.0 62 195-256 850-920 (1300)
203 TIGR01407 dinG_rel DnaQ family 93.0 0.15 3.3E-06 48.6 4.9 41 29-69 414-454 (850)
204 TIGR01389 recQ ATP-dependent D 93.0 2.1 4.6E-05 39.2 12.1 121 152-272 53-185 (591)
205 smart00489 DEXDc3 DEAD-like he 92.9 0.11 2.3E-06 42.8 3.2 39 30-69 210-250 (289)
206 smart00488 DEXDc2 DEAD-like he 92.9 0.11 2.3E-06 42.8 3.2 39 30-69 210-250 (289)
207 KOG0330 ATP-dependent RNA heli 92.4 0.75 1.6E-05 38.8 7.4 84 139-226 116-210 (476)
208 PRK11634 ATP-dependent RNA hel 91.7 1.1 2.4E-05 41.3 8.5 72 151-226 73-155 (629)
209 PRK12898 secA preprotein trans 91.7 1.8 4E-05 39.7 9.7 75 144-225 136-214 (656)
210 TIGR01054 rgy reverse gyrase. 91.7 0.5 1.1E-05 46.6 6.6 60 151-210 120-186 (1171)
211 PRK08074 bifunctional ATP-depe 91.6 0.27 5.9E-06 47.4 4.7 41 29-69 429-469 (928)
212 PRK11776 ATP-dependent RNA hel 91.4 1 2.3E-05 39.8 7.9 70 153-226 73-153 (460)
213 PF10593 Z1: Z1 domain; Inter 91.4 1 2.2E-05 35.9 7.0 94 168-267 103-201 (239)
214 COG1111 MPH1 ERCC4-like helica 91.4 2.6 5.7E-05 37.0 9.8 124 145-274 52-189 (542)
215 PRK11747 dinG ATP-dependent DN 91.2 0.22 4.9E-06 46.3 3.6 40 30-69 218-260 (697)
216 PRK07246 bifunctional ATP-depe 90.6 0.41 8.8E-06 45.5 4.8 39 30-69 412-450 (820)
217 KOG0338 ATP-dependent RNA heli 90.4 2.7 6E-05 37.0 8.9 83 140-226 237-333 (691)
218 KOG1513 Nuclear helicase MOP-3 89.6 0.82 1.8E-05 42.3 5.6 62 32-96 369-454 (1300)
219 PRK11192 ATP-dependent RNA hel 89.5 1.5 3.3E-05 38.4 7.2 70 153-226 74-153 (434)
220 PRK05642 DNA replication initi 89.3 0.7 1.5E-05 36.8 4.5 89 11-99 46-142 (234)
221 PF13401 AAA_22: AAA domain; P 89.3 1.9 4.1E-05 30.4 6.5 37 57-96 89-125 (131)
222 KOG1132 Helicase of the DEAD s 89.1 8.6 0.00019 36.3 11.5 77 153-230 562-655 (945)
223 KOG0347 RNA helicase [RNA proc 89.0 1.1 2.3E-05 39.8 5.5 69 154-226 265-346 (731)
224 KOG0388 SNF2 family DNA-depend 88.9 1 2.3E-05 41.1 5.6 84 9-100 642-737 (1185)
225 PF00271 Helicase_C: Helicase 88.8 0.9 1.9E-05 28.8 4.1 56 4-65 2-61 (78)
226 PF09848 DUF2075: Uncharacteri 88.8 1.5 3.3E-05 37.2 6.5 48 35-82 63-117 (352)
227 KOG0298 DEAD box-containing he 88.8 0.97 2.1E-05 43.9 5.6 97 151-251 1220-1316(1394)
228 KOG1132 Helicase of the DEAD s 88.5 0.41 8.8E-06 44.5 2.9 41 27-68 218-260 (945)
229 PRK11057 ATP-dependent DNA hel 88.2 7.4 0.00016 35.9 10.9 59 152-210 65-123 (607)
230 PRK10590 ATP-dependent RNA hel 87.8 2.5 5.4E-05 37.4 7.4 70 153-226 76-155 (456)
231 PRK04837 ATP-dependent RNA hel 87.7 2.8 6.1E-05 36.6 7.7 71 152-226 83-163 (423)
232 PRK04537 ATP-dependent RNA hel 87.5 1.7 3.7E-05 39.6 6.3 70 153-226 85-165 (572)
233 PRK08084 DNA replication initi 87.3 1.3 2.9E-05 35.2 5.0 90 9-98 44-142 (235)
234 TIGR00963 secA preprotein tran 86.6 4.5 9.8E-05 37.8 8.4 80 141-226 86-182 (745)
235 COG1435 Tdk Thymidine kinase [ 86.2 1.6 3.4E-05 33.3 4.5 74 8-83 31-109 (201)
236 PF00270 DEAD: DEAD/DEAH box h 86.1 7.3 0.00016 28.7 8.3 72 151-226 43-125 (169)
237 PF00308 Bac_DnaA: Bacterial d 85.9 2.7 5.9E-05 33.0 6.0 89 11-99 35-143 (219)
238 KOG0339 ATP-dependent RNA heli 85.9 3.7 8E-05 36.2 7.0 69 154-226 298-376 (731)
239 PRK12422 chromosomal replicati 85.9 4.4 9.5E-05 35.7 7.8 88 10-97 141-245 (445)
240 PF13173 AAA_14: AAA domain 85.8 1.4 3.1E-05 31.2 4.0 37 56-96 62-98 (128)
241 PF13086 AAA_11: AAA domain; P 85.2 0.51 1.1E-05 37.1 1.7 38 29-68 168-205 (236)
242 PRK08727 hypothetical protein; 85.2 2.3 4.9E-05 33.8 5.3 89 11-99 42-138 (233)
243 KOG0989 Replication factor C, 84.9 1.6 3.5E-05 35.8 4.2 44 52-96 126-169 (346)
244 PRK12900 secA preprotein trans 84.9 0.49 1.1E-05 45.0 1.5 65 2-68 200-271 (1025)
245 cd00561 CobA_CobO_BtuR ATP:cor 84.8 2.7 5.9E-05 31.1 5.1 51 53-103 93-145 (159)
246 TIGR00604 rad3 DNA repair heli 84.8 0.55 1.2E-05 43.9 1.9 39 30-69 194-234 (705)
247 COG1199 DinG Rad3-related DNA 84.7 0.82 1.8E-05 42.4 2.9 41 30-70 193-235 (654)
248 COG3973 Superfamily I DNA and 84.6 8.2 0.00018 35.0 8.6 88 140-243 643-736 (747)
249 PRK06893 DNA replication initi 84.3 1.9 4.2E-05 34.1 4.5 90 11-100 40-138 (229)
250 KOG1015 Transcription regulato 84.3 3.2 6.9E-05 39.5 6.3 85 9-98 759-861 (1567)
251 TIGR03420 DnaA_homol_Hda DnaA 84.2 3.6 7.7E-05 32.3 6.0 89 10-98 38-134 (226)
252 KOG0350 DEAD-box ATP-dependent 84.1 3.7 8.1E-05 36.0 6.2 76 151-226 214-301 (620)
253 TIGR00708 cobA cob(I)alamin ad 84.1 3 6.4E-05 31.4 5.1 50 54-103 96-147 (173)
254 PF13177 DNA_pol3_delta2: DNA 84.0 2.5 5.4E-05 31.4 4.8 65 31-97 67-143 (162)
255 PLN03137 ATP-dependent DNA hel 83.7 5 0.00011 39.4 7.5 58 153-210 501-560 (1195)
256 PRK09401 reverse gyrase; Revie 83.3 3.4 7.4E-05 41.0 6.5 75 151-226 122-207 (1176)
257 KOG1001 Helicase-like transcri 83.2 2.1 4.5E-05 39.6 4.7 81 8-99 215-295 (674)
258 KOG0343 RNA Helicase [RNA proc 83.1 16 0.00035 32.9 9.6 66 140-210 125-198 (758)
259 PRK01297 ATP-dependent RNA hel 83.0 11 0.00024 33.5 9.2 71 153-226 163-243 (475)
260 PRK14087 dnaA chromosomal repl 82.8 3.8 8.2E-05 36.2 6.1 89 11-99 142-251 (450)
261 PHA03368 DNA packaging termina 82.5 1.6 3.4E-05 39.9 3.6 46 49-97 346-391 (738)
262 KOG1133 Helicase of the DEAD s 82.2 1.7 3.6E-05 39.7 3.6 38 31-69 323-362 (821)
263 KOG0340 ATP-dependent RNA heli 82.0 3.3 7.2E-05 34.7 5.0 68 139-210 62-133 (442)
264 PF05621 TniB: Bacterial TniB 81.9 2.3 4.9E-05 35.0 4.1 40 56-96 146-189 (302)
265 PRK07414 cob(I)yrinic acid a,c 81.8 4.5 9.8E-05 30.5 5.3 50 54-103 114-165 (178)
266 COG1205 Distinct helicase fami 81.8 19 0.00042 34.7 10.6 133 140-277 104-259 (851)
267 PRK07003 DNA polymerase III su 81.5 2 4.3E-05 40.1 3.9 39 55-94 119-157 (830)
268 COG0553 HepA Superfamily II DN 81.3 2.4 5.2E-05 40.7 4.7 83 12-97 419-511 (866)
269 KOG3089 Predicted DEAD-box-con 81.2 3.5 7.6E-05 31.9 4.5 35 30-64 195-229 (271)
270 PF02562 PhoH: PhoH-like prote 80.9 2.3 4.9E-05 33.0 3.6 35 57-95 121-155 (205)
271 cd01524 RHOD_Pyr_redox Member 80.7 3 6.5E-05 27.3 3.8 37 151-187 50-86 (90)
272 PRK05986 cob(I)alamin adenolsy 80.6 4.9 0.00011 30.8 5.2 50 54-103 114-165 (191)
273 KOG0298 DEAD box-containing he 80.5 1.7 3.7E-05 42.3 3.3 88 9-99 446-553 (1394)
274 PTZ00110 helicase; Provisional 80.4 6.6 0.00014 35.7 6.9 71 152-226 203-283 (545)
275 PRK12323 DNA polymerase III su 80.2 2 4.4E-05 39.4 3.5 41 54-95 123-163 (700)
276 PRK07764 DNA polymerase III su 80.1 3 6.5E-05 39.7 4.8 39 54-93 119-157 (824)
277 PRK13104 secA preprotein trans 79.7 11 0.00025 36.0 8.2 61 145-211 116-180 (896)
278 cd01523 RHOD_Lact_B Member of 79.5 3.3 7.2E-05 27.7 3.7 37 151-187 60-96 (100)
279 PRK10536 hypothetical protein; 79.4 4.7 0.0001 32.5 4.9 34 57-94 178-211 (262)
280 PRK13103 secA preprotein trans 79.3 15 0.00032 35.3 8.8 68 138-211 109-180 (913)
281 PF02572 CobA_CobO_BtuR: ATP:c 79.3 5.2 0.00011 30.1 4.9 51 53-103 94-146 (172)
282 PRK06526 transposase; Provisio 78.1 2.8 6.1E-05 33.8 3.5 71 29-99 124-204 (254)
283 PRK14958 DNA polymerase III su 77.9 2.8 6.1E-05 37.6 3.7 38 55-93 119-156 (509)
284 KOG0333 U5 snRNP-like RNA heli 77.6 3.1 6.6E-05 36.8 3.7 49 6-60 538-590 (673)
285 PRK14088 dnaA chromosomal repl 77.2 17 0.00038 32.0 8.4 89 10-98 130-238 (440)
286 PRK04296 thymidine kinase; Pro 77.1 6.5 0.00014 30.1 5.1 28 37-67 63-90 (190)
287 PRK08903 DnaA regulatory inact 77.1 19 0.00041 28.3 7.9 83 11-98 43-133 (227)
288 PF02463 SMC_N: RecF/RecN/SMC 76.8 3.2 6.9E-05 32.5 3.5 41 55-95 158-198 (220)
289 PRK12904 preprotein translocas 76.7 14 0.00029 35.3 7.8 67 139-211 109-179 (830)
290 smart00450 RHOD Rhodanese Homo 76.4 6.6 0.00014 25.7 4.5 39 149-187 53-92 (100)
291 COG0593 DnaA ATPase involved i 76.1 12 0.00026 32.4 6.8 88 10-98 113-220 (408)
292 KOG0329 ATP-dependent RNA heli 76.0 5.8 0.00013 31.7 4.5 70 153-226 111-191 (387)
293 PRK06835 DNA replication prote 76.0 10 0.00022 31.9 6.3 87 11-98 184-290 (329)
294 COG2109 BtuR ATP:corrinoid ade 76.0 8.9 0.00019 29.2 5.3 51 55-105 122-174 (198)
295 PRK13766 Hef nuclease; Provisi 75.6 22 0.00047 33.9 9.2 77 150-231 56-142 (773)
296 smart00490 HELICc helicase sup 75.1 7.8 0.00017 24.2 4.5 52 7-64 9-64 (82)
297 KOG0389 SNF2 family DNA-depend 75.1 23 0.00051 33.3 8.5 73 139-214 435-511 (941)
298 COG2812 DnaX DNA polymerase II 74.8 2.6 5.6E-05 37.6 2.6 40 53-95 117-156 (515)
299 PRK15483 type III restriction- 74.8 9.3 0.0002 37.0 6.3 74 202-275 501-584 (986)
300 KOG0335 ATP-dependent RNA heli 74.7 41 0.00089 29.8 9.6 70 153-226 153-232 (482)
301 cd00046 DEXDc DEAD-like helica 74.6 24 0.00052 24.4 7.4 58 150-211 28-88 (144)
302 COG1875 NYN ribonuclease and A 74.5 4.1 9E-05 34.4 3.5 35 57-95 353-387 (436)
303 PF15586 Imm47: Immunity prote 74.2 4.1 9E-05 28.3 3.0 53 7-65 25-77 (116)
304 COG0514 RecQ Superfamily II DN 74.0 9.9 0.00021 34.6 6.0 122 152-275 57-192 (590)
305 PRK12901 secA preprotein trans 74.0 1.7 3.7E-05 41.7 1.4 65 2-68 231-303 (1112)
306 TIGR00362 DnaA chromosomal rep 73.7 9.2 0.0002 33.2 5.8 89 11-99 137-244 (405)
307 cd01529 4RHOD_Repeats Member o 72.9 7.7 0.00017 25.6 4.1 38 150-187 54-92 (96)
308 PHA00350 putative assembly pro 72.4 5.8 0.00013 34.2 4.1 41 57-97 83-146 (399)
309 PRK07994 DNA polymerase III su 72.2 4.5 9.8E-05 37.3 3.6 38 54-92 118-155 (647)
310 TIGR00678 holB DNA polymerase 72.2 9.2 0.0002 29.0 4.9 38 54-92 95-132 (188)
311 cd00032 CASc Caspase, interleu 71.6 44 0.00095 26.7 8.8 103 151-259 8-129 (243)
312 PF05707 Zot: Zonular occluden 71.2 3.6 7.9E-05 31.5 2.4 41 57-97 81-127 (193)
313 KOG0344 ATP-dependent RNA heli 70.4 9.8 0.00021 34.1 5.0 55 6-66 409-467 (593)
314 PRK14960 DNA polymerase III su 70.3 6.2 0.00013 36.4 4.0 38 55-93 118-155 (702)
315 PRK14964 DNA polymerase III su 70.2 9.3 0.0002 34.1 5.0 39 54-93 115-153 (491)
316 PRK09200 preprotein translocas 70.1 22 0.00047 33.9 7.5 64 141-210 108-176 (790)
317 PRK09751 putative ATP-dependen 70.0 21 0.00045 36.6 7.7 71 152-226 37-130 (1490)
318 TIGR03817 DECH_helic helicase/ 69.7 19 0.00042 34.1 7.2 71 151-226 80-163 (742)
319 COG0653 SecA Preprotein transl 69.6 3 6.4E-05 39.2 1.9 65 1-67 141-212 (822)
320 PRK14951 DNA polymerase III su 69.5 4.9 0.00011 36.9 3.2 39 54-93 123-161 (618)
321 cd01534 4RHOD_Repeat_3 Member 69.3 8.8 0.00019 25.3 3.7 36 152-187 56-91 (95)
322 PRK14949 DNA polymerase III su 69.2 5.5 0.00012 38.1 3.5 38 54-92 118-155 (944)
323 PF13604 AAA_30: AAA domain; P 69.2 11 0.00023 29.1 4.6 39 53-95 91-130 (196)
324 PLN03025 replication factor C 68.8 6.5 0.00014 32.9 3.6 41 54-96 98-138 (319)
325 PRK14952 DNA polymerase III su 68.8 8.1 0.00017 35.3 4.4 39 54-93 117-155 (584)
326 PF01751 Toprim: Toprim domain 68.7 8.7 0.00019 25.8 3.6 61 155-215 1-73 (100)
327 PRK14956 DNA polymerase III su 68.5 6.1 0.00013 35.0 3.4 38 55-95 121-158 (484)
328 KOG0383 Predicted helicase [Ge 68.5 4.2 9E-05 37.6 2.5 64 151-215 630-696 (696)
329 PRK00149 dnaA chromosomal repl 68.5 6.8 0.00015 34.6 3.8 89 11-99 149-256 (450)
330 PRK04132 replication factor C 68.3 10 0.00022 36.3 5.0 39 55-94 630-668 (846)
331 PF03354 Terminase_1: Phage Te 68.0 5.4 0.00012 35.5 3.1 38 54-92 122-159 (477)
332 cd01518 RHOD_YceA Member of th 67.8 10 0.00022 25.3 3.9 38 150-187 59-97 (101)
333 PHA02544 44 clamp loader, smal 67.7 8.5 0.00018 32.0 4.2 39 55-93 100-138 (316)
334 PRK14086 dnaA chromosomal repl 67.5 18 0.00039 33.2 6.3 87 11-97 315-421 (617)
335 PRK08116 hypothetical protein; 67.5 13 0.00028 30.3 5.0 87 12-99 116-224 (268)
336 COG3587 Restriction endonuclea 67.4 13 0.00028 35.2 5.3 72 202-273 483-567 (985)
337 PRK10875 recD exonuclease V su 66.6 9.7 0.00021 35.1 4.5 36 56-95 266-301 (615)
338 PLN00206 DEAD-box ATP-dependen 66.6 25 0.00053 31.8 7.0 72 151-226 195-276 (518)
339 PRK08181 transposase; Validate 66.0 15 0.00032 30.0 5.0 70 29-98 132-211 (269)
340 TIGR01447 recD exodeoxyribonuc 66.0 9.9 0.00021 34.8 4.4 37 55-95 259-295 (586)
341 PRK09112 DNA polymerase III su 65.9 9 0.0002 32.6 3.9 41 54-95 140-180 (351)
342 PRK07940 DNA polymerase III su 64.9 21 0.00046 30.9 6.0 66 31-99 84-159 (394)
343 PRK06620 hypothetical protein; 64.9 8.7 0.00019 30.1 3.4 79 11-99 45-125 (214)
344 PRK12899 secA preprotein trans 64.8 40 0.00086 32.7 8.0 55 151-211 134-192 (970)
345 PRK07413 hypothetical protein; 64.6 17 0.00037 31.2 5.3 51 54-104 124-176 (382)
346 PRK14965 DNA polymerase III su 64.6 9 0.0002 35.0 3.9 39 54-93 118-156 (576)
347 cd01526 RHOD_ThiF Member of th 64.0 8.8 0.00019 26.8 3.1 37 151-187 71-109 (122)
348 cd01527 RHOD_YgaP Member of th 64.0 13 0.00029 24.6 3.8 36 151-186 53-89 (99)
349 PF05872 DUF853: Bacterial pro 63.9 15 0.00033 32.2 4.8 47 52-98 251-302 (502)
350 PRK14969 DNA polymerase III su 63.7 7.5 0.00016 35.1 3.2 39 54-93 118-156 (527)
351 TIGR01448 recD_rel helicase, p 63.7 9.5 0.00021 35.9 4.0 37 55-95 416-452 (720)
352 PRK10310 PTS system galactitol 63.5 41 0.00089 22.3 6.1 66 154-226 4-75 (94)
353 cd01521 RHOD_PspE2 Member of t 63.5 14 0.0003 25.2 3.9 37 151-187 63-101 (110)
354 PHA03372 DNA packaging termina 63.3 7.8 0.00017 35.2 3.1 45 48-96 292-337 (668)
355 PRK14961 DNA polymerase III su 62.8 9.5 0.00021 32.6 3.6 39 54-93 118-156 (363)
356 PRK08451 DNA polymerase III su 62.7 9.6 0.00021 34.4 3.6 39 54-93 116-154 (535)
357 smart00487 DEXDc DEAD-like hel 62.2 62 0.0013 24.0 8.6 71 152-226 54-135 (201)
358 cd01444 GlpE_ST GlpE sulfurtra 62.1 15 0.00032 24.1 3.8 36 151-186 55-91 (96)
359 KOG0342 ATP-dependent RNA heli 62.0 23 0.00049 31.3 5.5 56 151-210 153-213 (543)
360 smart00115 CASc Caspase, inter 62.0 80 0.0017 25.2 10.2 84 151-240 7-106 (241)
361 PRK08691 DNA polymerase III su 61.9 10 0.00023 35.2 3.8 39 54-93 118-156 (709)
362 cd01532 4RHOD_Repeat_1 Member 61.8 15 0.00032 24.1 3.7 36 152-187 50-88 (92)
363 TIGR00631 uvrb excinuclease AB 61.7 54 0.0012 30.7 8.3 101 139-240 42-173 (655)
364 PRK14957 DNA polymerase III su 61.6 12 0.00025 34.0 3.9 39 54-93 118-156 (546)
365 PF00265 TK: Thymidine kinase; 60.7 12 0.00026 28.3 3.3 39 56-96 77-115 (176)
366 PRK07413 hypothetical protein; 60.6 22 0.00049 30.5 5.3 51 54-104 304-357 (382)
367 TIGR00696 wecB_tagA_cpsF bacte 60.6 72 0.0016 24.2 8.5 56 153-208 49-106 (177)
368 COG1204 Superfamily II helicas 60.4 33 0.00072 32.7 6.8 68 152-226 76-152 (766)
369 PF00004 AAA: ATPase family as 60.1 24 0.00052 24.5 4.8 16 56-71 59-74 (132)
370 PRK09111 DNA polymerase III su 60.0 13 0.00028 34.2 4.0 40 53-93 130-169 (598)
371 PF03808 Glyco_tran_WecB: Glyc 60.0 71 0.0015 23.9 7.8 57 152-208 48-107 (172)
372 cd01520 RHOD_YbbB Member of th 60.0 13 0.00029 26.1 3.4 37 151-187 85-122 (128)
373 PRK02362 ski2-like helicase; P 59.9 33 0.00071 32.6 6.8 69 151-226 66-143 (737)
374 KOG0345 ATP-dependent RNA heli 59.9 22 0.00047 31.3 5.0 70 154-226 81-163 (567)
375 KOG0337 ATP-dependent RNA heli 59.4 37 0.00081 29.5 6.2 84 139-226 76-170 (529)
376 PTZ00424 helicase 45; Provisio 59.1 69 0.0015 27.6 8.3 72 151-226 95-176 (401)
377 PF00072 Response_reg: Respons 58.9 51 0.0011 21.9 6.7 58 35-100 28-85 (112)
378 PRK09087 hypothetical protein; 58.9 49 0.0011 26.1 6.7 83 11-99 45-129 (226)
379 smart00493 TOPRIM topoisomeras 58.8 41 0.00089 20.8 6.2 59 155-215 2-60 (76)
380 COG1485 Predicted ATPase [Gene 58.3 9.2 0.0002 32.2 2.6 47 55-102 130-177 (367)
381 COG3421 Uncharacterized protei 58.1 16 0.00034 33.3 4.0 39 31-69 81-126 (812)
382 KOG0990 Replication factor C, 58.0 13 0.00028 30.9 3.3 40 55-95 131-170 (360)
383 PF08704 GCD14: tRNA methyltra 57.8 42 0.0009 27.0 6.1 54 124-178 112-165 (247)
384 COG2519 GCD14 tRNA(1-methylade 57.7 40 0.00088 27.1 5.9 52 124-177 162-213 (256)
385 cd01528 RHOD_2 Member of the R 57.6 19 0.00042 23.9 3.7 37 151-187 57-94 (101)
386 cd01525 RHOD_Kc Member of the 57.6 21 0.00045 23.9 3.9 36 152-187 65-101 (105)
387 cd01533 4RHOD_Repeat_2 Member 57.5 16 0.00035 24.8 3.4 37 151-187 65-103 (109)
388 PRK11054 helD DNA helicase IV; 57.3 80 0.0017 29.8 8.7 70 154-229 536-610 (684)
389 PRK08058 DNA polymerase III su 57.2 34 0.00073 28.8 5.9 62 31-94 77-148 (329)
390 PRK07399 DNA polymerase III su 56.5 37 0.00081 28.4 5.9 39 54-94 123-161 (314)
391 PF05127 Helicase_RecD: Helica 56.0 17 0.00037 27.5 3.5 34 56-97 91-124 (177)
392 cd01519 RHOD_HSP67B2 Member of 55.9 15 0.00032 24.7 3.0 36 151-186 65-101 (106)
393 PRK07471 DNA polymerase III su 55.3 17 0.00038 31.1 3.9 42 54-96 140-181 (365)
394 cd01447 Polysulfide_ST Polysul 55.0 14 0.00031 24.5 2.7 36 151-186 60-96 (103)
395 cd06533 Glyco_transf_WecG_TagA 54.9 88 0.0019 23.4 8.3 57 152-208 46-105 (171)
396 PRK14959 DNA polymerase III su 54.4 15 0.00033 33.8 3.5 28 54-82 118-145 (624)
397 PRK12402 replication factor C 54.1 32 0.0007 28.8 5.3 38 55-93 125-162 (337)
398 PRK00440 rfc replication facto 53.9 31 0.00068 28.6 5.2 38 55-93 102-139 (319)
399 cd00009 AAA The AAA+ (ATPases 53.9 20 0.00043 25.2 3.6 29 54-83 83-111 (151)
400 cd00158 RHOD Rhodanese Homolog 53.8 28 0.0006 22.1 4.0 38 150-187 48-86 (89)
401 PRK12723 flagellar biosynthesi 53.6 1.2E+02 0.0026 26.4 8.6 88 9-100 206-301 (388)
402 PF12683 DUF3798: Protein of u 53.6 34 0.00073 27.7 4.9 128 87-234 3-144 (275)
403 PRK04841 transcriptional regul 53.5 15 0.00033 35.6 3.7 41 57-97 123-163 (903)
404 PRK06645 DNA polymerase III su 53.4 19 0.00041 32.4 3.9 28 54-82 127-154 (507)
405 PF03969 AFG1_ATPase: AFG1-lik 52.8 11 0.00025 32.1 2.4 45 56-101 128-173 (362)
406 PRK14974 cell division protein 52.7 28 0.0006 29.5 4.6 53 55-107 222-275 (336)
407 COG0556 UvrB Helicase subunit 52.5 68 0.0015 29.0 6.9 94 3-102 464-563 (663)
408 COG0470 HolB ATPase involved i 52.4 31 0.00067 28.6 4.9 40 54-94 108-147 (325)
409 PRK14962 DNA polymerase III su 51.9 23 0.00051 31.5 4.2 17 54-70 116-132 (472)
410 COG2256 MGS1 ATPase related to 51.8 15 0.00033 31.6 2.8 37 57-98 106-142 (436)
411 PF14617 CMS1: U3-containing 9 51.8 23 0.0005 28.5 3.8 87 153-242 127-235 (252)
412 KOG3201 Uncharacterized conser 51.3 86 0.0019 23.5 6.2 43 57-106 111-153 (201)
413 PRK05298 excinuclease ABC subu 51.2 1.2E+02 0.0026 28.4 8.9 101 139-240 45-176 (652)
414 PF04364 DNA_pol3_chi: DNA pol 50.6 92 0.002 22.4 8.4 80 140-230 15-96 (137)
415 KOG0328 Predicted ATP-dependen 50.6 33 0.00072 28.1 4.4 48 8-61 289-340 (400)
416 COG2909 MalT ATP-dependent tra 50.1 25 0.00053 33.5 4.1 41 57-97 131-171 (894)
417 PRK13767 ATP-dependent helicas 49.9 52 0.0011 32.0 6.5 70 153-226 85-178 (876)
418 PRK14955 DNA polymerase III su 49.9 21 0.00046 30.9 3.6 40 53-93 125-164 (397)
419 cd01449 TST_Repeat_2 Thiosulfa 49.6 41 0.0009 23.0 4.5 36 151-186 77-113 (118)
420 PTZ00293 thymidine kinase; Pro 49.4 41 0.00088 26.3 4.7 14 54-67 76-89 (211)
421 PHA00673 acetyltransferase dom 49.1 35 0.00076 25.2 4.1 49 55-105 87-137 (154)
422 PRK10287 thiosulfate:cyanide s 49.1 34 0.00073 23.2 3.8 36 152-187 60-95 (104)
423 PF02142 MGS: MGS-like domain 48.9 17 0.00037 24.1 2.3 48 160-211 18-69 (95)
424 COG1196 Smc Chromosome segrega 48.6 32 0.00069 34.7 5.0 51 56-108 1089-1139(1163)
425 KOG1803 DNA helicase [Replicat 48.4 22 0.00047 32.3 3.4 36 31-70 338-373 (649)
426 PRK00254 ski2-like helicase; P 48.1 45 0.00098 31.6 5.7 68 152-226 68-144 (720)
427 PLN02955 8-amino-7-oxononanoat 48.1 30 0.00066 30.8 4.3 27 157-183 398-424 (476)
428 PHA00012 I assembly protein 47.7 63 0.0014 27.3 5.7 44 54-97 80-129 (361)
429 cd01448 TST_Repeat_1 Thiosulfa 47.0 48 0.001 22.9 4.5 37 151-187 78-116 (122)
430 COG4098 comFA Superfamily II D 46.6 1.9E+02 0.0041 24.8 8.3 96 151-260 143-244 (441)
431 PRK12377 putative replication 46.5 48 0.0011 26.6 4.9 66 30-95 128-205 (248)
432 TIGR02981 phageshock_pspE phag 46.4 39 0.00084 22.8 3.8 36 151-186 57-92 (101)
433 PRK15483 type III restriction- 46.4 20 0.00042 34.9 3.0 64 31-98 162-240 (986)
434 PRK08769 DNA polymerase III su 46.2 26 0.00056 29.4 3.5 41 55-96 113-153 (319)
435 PRK14953 DNA polymerase III su 46.1 27 0.00058 31.3 3.7 28 54-82 118-145 (486)
436 PRK13107 preprotein translocas 45.9 1.3E+02 0.0028 29.3 8.1 67 139-211 110-180 (908)
437 cd01120 RecA-like_NTPases RecA 45.7 44 0.00096 24.0 4.4 16 54-69 84-99 (165)
438 TIGR03714 secA2 accessory Sec 45.4 1.1E+02 0.0025 29.1 7.6 61 145-211 104-173 (762)
439 PRK06090 DNA polymerase III su 44.7 66 0.0014 27.0 5.6 42 54-96 107-148 (319)
440 KOG0348 ATP-dependent RNA heli 44.5 29 0.00063 31.2 3.5 71 151-226 210-293 (708)
441 PRK05563 DNA polymerase III su 44.5 24 0.00052 32.2 3.2 18 54-71 118-135 (559)
442 KOG0336 ATP-dependent RNA heli 44.4 1.8E+02 0.0039 25.5 7.9 72 151-226 293-373 (629)
443 PRK05320 rhodanese superfamily 44.3 41 0.00089 27.2 4.2 37 151-187 174-211 (257)
444 KOG0953 Mitochondrial RNA heli 44.2 83 0.0018 28.6 6.2 163 4-175 376-551 (700)
445 PF13304 AAA_21: AAA domain; P 44.1 28 0.0006 27.4 3.3 39 57-95 259-298 (303)
446 KOG0346 RNA helicase [RNA proc 44.0 67 0.0014 28.3 5.4 62 152-217 93-165 (569)
447 smart00382 AAA ATPases associa 44.0 33 0.00072 23.7 3.4 18 56-73 79-96 (148)
448 PRK14971 DNA polymerase III su 43.5 28 0.0006 32.3 3.5 40 53-93 119-158 (614)
449 PRK06921 hypothetical protein; 43.5 25 0.00053 28.6 2.9 90 10-99 117-227 (266)
450 cd01535 4RHOD_Repeat_4 Member 43.4 42 0.00092 24.3 3.9 37 151-187 48-85 (145)
451 cd05212 NAD_bind_m-THF_DH_Cycl 42.9 1.3E+02 0.0028 21.8 7.2 76 149-231 25-103 (140)
452 COG4588 AcfC Accessory coloniz 42.9 52 0.0011 25.5 4.2 61 3-65 41-104 (252)
453 KOG0334 RNA helicase [RNA proc 42.6 90 0.0019 30.5 6.5 54 153-210 439-496 (997)
454 PRK00411 cdc6 cell division co 42.2 41 0.00088 29.0 4.2 12 57-68 140-151 (394)
455 TIGR02881 spore_V_K stage V sp 42.2 27 0.00059 28.2 2.9 13 57-69 107-119 (261)
456 PHA03333 putative ATPase subun 42.1 37 0.0008 31.7 3.9 41 54-97 293-333 (752)
457 PRK13889 conjugal transfer rel 41.9 81 0.0018 31.1 6.4 39 53-95 431-470 (988)
458 PRK05707 DNA polymerase III su 41.8 34 0.00073 28.9 3.5 40 54-94 105-144 (328)
459 PRK14948 DNA polymerase III su 41.7 31 0.00068 31.9 3.5 37 54-91 120-156 (620)
460 PRK12326 preprotein translocas 41.7 1.5E+02 0.0032 28.3 7.6 60 137-196 104-167 (764)
461 PLN02160 thiosulfate sulfurtra 41.7 38 0.00083 24.2 3.4 37 151-187 80-117 (136)
462 PRK06305 DNA polymerase III su 41.5 39 0.00085 29.9 4.0 39 54-93 120-158 (451)
463 cd01522 RHOD_1 Member of the R 41.5 44 0.00096 23.0 3.6 37 151-187 63-100 (117)
464 PF12846 AAA_10: AAA-like doma 40.9 27 0.00058 28.5 2.8 42 55-96 220-263 (304)
465 PRK04195 replication factor C 40.8 25 0.00054 31.4 2.8 60 10-69 39-112 (482)
466 cd06353 PBP1_BmpA_Med_like Per 40.7 34 0.00073 27.6 3.3 61 3-63 25-89 (258)
467 PF01637 Arch_ATPase: Archaeal 39.8 55 0.0012 25.3 4.4 40 57-96 120-165 (234)
468 PRK13341 recombination factor 39.8 72 0.0016 30.3 5.6 40 55-99 109-148 (725)
469 KOG0351 ATP-dependent DNA heli 39.8 72 0.0016 31.2 5.6 122 154-277 306-448 (941)
470 PRK06871 DNA polymerase III su 39.5 37 0.00081 28.6 3.4 40 54-94 106-145 (325)
471 PRK13342 recombination factor 39.3 76 0.0016 27.7 5.4 37 55-96 92-128 (413)
472 smart00851 MGS MGS-like domain 39.3 45 0.00098 21.7 3.2 41 170-211 24-64 (90)
473 PRK14950 DNA polymerase III su 39.0 42 0.00091 30.9 3.9 33 54-87 119-151 (585)
474 PF11823 DUF3343: Protein of u 39.0 74 0.0016 19.8 4.0 29 154-182 3-31 (73)
475 PRK07133 DNA polymerase III su 38.8 36 0.00079 32.0 3.5 39 54-93 117-155 (725)
476 PRK00162 glpE thiosulfate sulf 38.8 58 0.0013 21.9 3.8 37 151-187 57-94 (108)
477 PTZ00112 origin recognition co 38.5 83 0.0018 30.8 5.6 15 56-70 870-884 (1164)
478 PRK06964 DNA polymerase III su 38.5 41 0.00089 28.6 3.5 41 54-95 131-171 (342)
479 PRK05728 DNA polymerase III su 38.3 1.4E+02 0.003 21.6 5.8 81 137-229 12-94 (142)
480 KOG1016 Predicted DNA helicase 37.8 57 0.0012 31.0 4.4 44 56-102 435-479 (1387)
481 PRK05917 DNA polymerase III su 37.7 46 0.001 27.5 3.6 42 54-96 94-135 (290)
482 COG0426 FpaA Uncharacterized f 37.6 2.8E+02 0.006 24.2 8.7 76 139-217 233-313 (388)
483 PRK14954 DNA polymerase III su 37.4 43 0.00092 31.1 3.7 39 54-93 126-164 (620)
484 PRK13826 Dtr system oriT relax 37.1 88 0.0019 31.3 5.8 40 52-95 465-505 (1102)
485 cd01080 NAD_bind_m-THF_DH_Cycl 37.0 1.8E+02 0.0039 21.8 8.1 87 141-234 33-122 (168)
486 PRK05896 DNA polymerase III su 37.0 39 0.00085 31.1 3.3 38 55-93 119-156 (605)
487 PRK06647 DNA polymerase III su 36.8 36 0.00078 31.1 3.1 28 54-82 118-145 (563)
488 PF01113 DapB_N: Dihydrodipico 36.8 1.5E+02 0.0032 20.8 5.8 55 154-210 69-123 (124)
489 TIGR02768 TraA_Ti Ti-type conj 36.7 97 0.0021 29.6 6.0 37 53-93 437-474 (744)
490 PRK09281 F0F1 ATP synthase sub 36.7 3.3E+02 0.0071 24.7 10.6 24 165-188 242-265 (502)
491 KOG0386 Chromatin remodeling c 36.6 1.5E+02 0.0034 29.1 7.0 71 139-210 430-501 (1157)
492 COG0300 DltE Short-chain dehyd 36.5 2.1E+02 0.0046 23.4 7.1 60 151-210 29-92 (265)
493 cd03027 GRX_DEP Glutaredoxin ( 36.2 1E+02 0.0022 18.8 6.2 53 154-206 2-55 (73)
494 PRK01172 ski2-like helicase; P 36.1 1.5E+02 0.0031 28.0 7.1 68 152-226 65-141 (674)
495 TIGR01970 DEAH_box_HrpB ATP-de 36.0 71 0.0015 30.8 5.0 48 8-61 235-286 (819)
496 PRK07993 DNA polymerase III su 35.7 1E+02 0.0022 26.1 5.4 62 31-94 73-146 (334)
497 PRK12902 secA preprotein trans 35.5 2.9E+02 0.0064 27.1 8.6 58 138-195 112-173 (939)
498 PRK14963 DNA polymerase III su 35.4 48 0.001 29.9 3.6 16 54-69 115-130 (504)
499 COG4626 Phage terminase-like p 35.2 55 0.0012 29.6 3.8 40 53-94 182-223 (546)
500 COG0074 SucD Succinyl-CoA synt 35.0 2.6E+02 0.0056 23.1 8.5 79 139-220 53-131 (293)
No 1
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-51 Score=314.82 Aligned_cols=285 Identities=68% Similarity=1.104 Sum_probs=277.2
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
..++...++.++.+.||++..+..+.+.-+.+++.+||+++++++++..+....++++|+||++.+++.++..++-.+.+
T Consensus 116 ~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr 195 (400)
T KOG0328|consen 116 LALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYR 195 (400)
T ss_pred HHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHH
Confidence 35778889999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred hCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecc
Q 023157 82 LLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNT 161 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~ 161 (286)
++|+.+|++++|||++.+..+....+..+|+.+...+++...+.+.+++..++.+++|.+.++.++....-..++|||++
T Consensus 196 ~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnT 275 (400)
T KOG0328|consen 196 YLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNT 275 (400)
T ss_pred hCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhc
Q 023157 162 RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 241 (286)
Q Consensus 162 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~G 241 (286)
+..+.++.+.+++.+..+...||+|++++|..++..|++|+.+|||+|++-++|+|+|.++.||.||.|.+...|+||+|
T Consensus 276 k~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIG 355 (400)
T KOG0328|consen 276 KRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIG 355 (400)
T ss_pred cchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhccC
Q 023157 242 RSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 286 (286)
Q Consensus 242 R~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 286 (286)
|.||.|..|.++-|+..+|.+.+..+++++...+.+.|..+++++
T Consensus 356 RSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad~i 400 (400)
T KOG0328|consen 356 RSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVADLI 400 (400)
T ss_pred cccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhhcC
Confidence 999999999999999999999999999999999999999998875
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-48 Score=325.25 Aligned_cols=283 Identities=37% Similarity=0.632 Sum_probs=260.7
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
.++.+.++++..+++||.+...|...+.++++|+|+||+++.+++..+.+.++++.++|+|||+.|++.+|.+++..|+.
T Consensus 186 ~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~ 265 (519)
T KOG0331|consen 186 REFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILS 265 (519)
T ss_pred HHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHH
Confidence 45777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcC-ccEEEEEeecChhHHHHHHHhcCCCeEEEecCCc--cccccceeEEEEccchhhHHHHHHHHHhhc---cCcce
Q 023157 82 LLPAK-VQVGVFSATMPPEALEITRKFMNKPVRILVKRDE--LTLEGIKQFYVNVEKEEWKLETLCDLYETL---AITQS 155 (286)
Q Consensus 82 ~~~~~-~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~ 155 (286)
..+.+ .|.++.|||++.....+...++.++..+.+.... .....+.+....++... |...+..++... ..+|+
T Consensus 266 ~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~-K~~~l~~lL~~~~~~~~~Kv 344 (519)
T KOG0331|consen 266 QIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETA-KLRKLGKLLEDISSDSEGKV 344 (519)
T ss_pred hcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHH-HHHHHHHHHHHHhccCCCcE
Confidence 99544 4799999999999999999999999888887553 45667888888888444 777777666655 56799
Q ss_pred EEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcch
Q 023157 156 VIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPEN 235 (286)
Q Consensus 156 ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~ 235 (286)
||||++++.|+.+...++..++++..+||+.++.+|..+++.|++|+..|||||+++++|+|+|++++||++|+|.+.++
T Consensus 345 IIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEd 424 (519)
T KOG0331|consen 345 IIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVED 424 (519)
T ss_pred EEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhcc
Q 023157 236 YLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 285 (286)
Q Consensus 236 ~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 285 (286)
|+||+||+||.|+.|.+++|+...+......+.+.++...+.+|..|..+
T Consensus 425 YVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~ 474 (519)
T KOG0331|consen 425 YVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEY 474 (519)
T ss_pred HHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHH
Confidence 99999999999999999999999999999999999999999999988653
No 3
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.3e-48 Score=305.47 Aligned_cols=276 Identities=32% Similarity=0.560 Sum_probs=262.9
Q ss_pred CcccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhc-CCCCCCCccEEEEehhhHhhccccHHHHHHH
Q 023157 1 MRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLSRGFKDQIYDI 79 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i 79 (286)
++.++...|+++..+.||.....+...+.+.++|+|+||++|.+++.+ ..+.+..++++|+|||+.+++..|...+..|
T Consensus 149 fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~I 228 (476)
T KOG0330|consen 149 FEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYI 228 (476)
T ss_pred HHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHH
Confidence 356788899999999999999999999999999999999999999995 6677888999999999999999999999999
Q ss_pred HHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEe
Q 023157 80 FQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFV 159 (286)
Q Consensus 80 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~ 159 (286)
+..+|...|.+++|||++....++....+.+|..+.........+.+.+.+..++... |-..+..+++...++.+||||
T Consensus 229 Lk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~-K~~yLV~ll~e~~g~s~iVF~ 307 (476)
T KOG0330|consen 229 LKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKD-KDTYLVYLLNELAGNSVIVFC 307 (476)
T ss_pred HHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccc-cchhHHHHHHhhcCCcEEEEE
Confidence 9999999999999999999999999999999999999998888899999999888776 888889999999999999999
Q ss_pred cchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhh
Q 023157 160 NTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 239 (286)
Q Consensus 160 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~ 239 (286)
++...+..++-.|+..|+.+..+||.|++..|.-.++.|++|..+||+||+++++|+|+|.+++||.||.|.+..+|+||
T Consensus 308 ~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHR 387 (476)
T KOG0330|consen 308 NTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHR 387 (476)
T ss_pred eccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCcceEEEEeccCcHHHHHHHHHHhchhccc
Q 023157 240 IGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 277 (286)
Q Consensus 240 ~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (286)
+||++|.|.+|.++.+++..|.+.+.+|+..+++...+
T Consensus 388 vGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 388 VGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred cccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999887765
No 4
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.9e-46 Score=329.39 Aligned_cols=283 Identities=34% Similarity=0.550 Sum_probs=250.7
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
++|....++++..++|+.....+...+..+++|+|+||++|.+++.+....+.++++||+||||++.+++|...+..++.
T Consensus 224 ~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~ 303 (545)
T PTZ00110 224 NKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVS 303 (545)
T ss_pred HHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHH
Confidence 35666778999999999998888888888999999999999999998888889999999999999999999999999999
Q ss_pred hCCcCccEEEEEeecChhHHHHHHHhcC-CCeEEEecCCc-cccccceeEEEEccchhhHHHHHHHHHhhc--cCcceEE
Q 023157 82 LLPAKVQVGVFSATMPPEALEITRKFMN-KPVRILVKRDE-LTLEGIKQFYVNVEKEEWKLETLCDLYETL--AITQSVI 157 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~iv 157 (286)
.+++..|++++|||++.....+.+.++. .+..+...... .....+.+.+..+.... +...+..++... .+.++||
T Consensus 304 ~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~-k~~~L~~ll~~~~~~~~k~LI 382 (545)
T PTZ00110 304 QIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHE-KRGKLKMLLQRIMRDGDKILI 382 (545)
T ss_pred hCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechh-HHHHHHHHHHHhcccCCeEEE
Confidence 9988999999999999988888887775 46666554433 23345666665555443 666666666654 5679999
Q ss_pred EecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhh
Q 023157 158 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYL 237 (286)
Q Consensus 158 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~ 237 (286)
||++++.|+.+++.|+..++.+..+||++++++|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.+..+|+
T Consensus 383 F~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yv 462 (545)
T PTZ00110 383 FVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYV 462 (545)
T ss_pred EecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhcc
Q 023157 238 HRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 285 (286)
Q Consensus 238 Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 285 (286)
||+||+||.|..|.+++|+++.+......+.+.++...+++|++|.++
T Consensus 463 qRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~ 510 (545)
T PTZ00110 463 HRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKL 510 (545)
T ss_pred HHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999764
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-46 Score=326.10 Aligned_cols=275 Identities=46% Similarity=0.754 Sum_probs=258.1
Q ss_pred ccccccc-CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHH
Q 023157 2 RALGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF 80 (286)
Q Consensus 2 ~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~ 80 (286)
+++.+.. ++++..++||.+...+...+..+++|+|+||+++++++.+..+.++.+.++|+|||+.+.+.+|...+..++
T Consensus 120 ~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~ 199 (513)
T COG0513 120 RKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKIL 199 (513)
T ss_pred HHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHH
Confidence 3566677 799999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCcc--ccccceeEEEEccchhhHHHHHHHHHhhccCcceEEE
Q 023157 81 QLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL--TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIF 158 (286)
Q Consensus 81 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf 158 (286)
...+.+.|++++|||+++....+.+.++.+|..+....... ....+.+.++.+.....|...+..+++.....++|||
T Consensus 200 ~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF 279 (513)
T COG0513 200 KALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVF 279 (513)
T ss_pred HhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 99999999999999999999999999999999888885555 7788999999999877799999999998887899999
Q ss_pred ecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhh
Q 023157 159 VNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 238 (286)
Q Consensus 159 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q 238 (286)
|++...++.++..|...|+.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+||.|.+...|+|
T Consensus 280 ~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvH 359 (513)
T COG0513 280 VRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVH 359 (513)
T ss_pred eCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCcceEEEEeccC-cHHHHHHHHHHhchhcc
Q 023157 239 RIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIE 276 (286)
Q Consensus 239 ~~GR~~R~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~ 276 (286)
|+||+||.|..|.++.|+.+. +...+..+++.++....
T Consensus 360 RiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 360 RIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred ccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999986 89999999988876633
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-46 Score=321.25 Aligned_cols=278 Identities=31% Similarity=0.485 Sum_probs=247.5
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
.+.+..|+++..++|+.+...+...+..+++|+|+||+++.+++.+..+.+++++++|+||||++.++++...+..++..
T Consensus 105 ~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~ 184 (423)
T PRK04837 105 PLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRR 184 (423)
T ss_pred HHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHh
Confidence 45667899999999999888888888888999999999999999988889999999999999999999999999999988
Q ss_pred CCc--CccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEec
Q 023157 83 LPA--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVN 160 (286)
Q Consensus 83 ~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~ 160 (286)
.+. ..+.+++|||++..........+.++..+...........+.+.+..... ..+...+..++......++||||+
T Consensus 185 ~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lVF~~ 263 (423)
T PRK04837 185 MPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSN-EEKMRLLQTLIEEEWPDRAIIFAN 263 (423)
T ss_pred CCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCH-HHHHHHHHHHHHhcCCCeEEEEEC
Confidence 874 44578999999998888888888888877776665555566665554443 447888888888777789999999
Q ss_pred chhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhh
Q 023157 161 TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI 240 (286)
Q Consensus 161 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~ 240 (286)
++..|+.+++.|...|+.+..+||++++++|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.+..+|+||+
T Consensus 264 t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~ 343 (423)
T PRK04837 264 TKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 343 (423)
T ss_pred CHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcc
Q 023157 241 GRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSN 281 (286)
Q Consensus 241 GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (286)
||+||.|..|.+++|+.+.+...+..+++.++..++..+..
T Consensus 344 GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 384 (423)
T PRK04837 344 GRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYD 384 (423)
T ss_pred ccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCccCC
Confidence 99999999999999999999999999999888887655443
No 7
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.3e-45 Score=319.41 Aligned_cols=274 Identities=34% Similarity=0.598 Sum_probs=248.3
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
+++.+.+++++..++|+.+.+.+...+.++++|+|+||++|.+++....+.++++++||+||+|++.++++...+..++.
T Consensus 96 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~ 175 (456)
T PRK10590 96 RDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLA 175 (456)
T ss_pred HHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHH
Confidence 34566778999999999998888888888899999999999999988888899999999999999999999999999999
Q ss_pred hCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecc
Q 023157 82 LLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNT 161 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~ 161 (286)
.++...|.+++|||+++....+...++.++..+...........+.+.+..++... +...+..++......++||||++
T Consensus 176 ~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~l~~~~~~~~~lVF~~t 254 (456)
T PRK10590 176 KLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR-KRELLSQMIGKGNWQQVLVFTRT 254 (456)
T ss_pred hCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHH-HHHHHHHHHHcCCCCcEEEEcCc
Confidence 99988999999999999888888888888887777666556666777776665543 67777788777777899999999
Q ss_pred hhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhc
Q 023157 162 RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 241 (286)
Q Consensus 162 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~G 241 (286)
+..++.+++.|...++.+..+||++++++|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+..+|+||+|
T Consensus 255 ~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~G 334 (456)
T PRK10590 255 KHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIG 334 (456)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcceEEEEeccCcHHHHHHHHHHhchhcc
Q 023157 242 RSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 276 (286)
Q Consensus 242 R~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (286)
|+||.|..|.+++++...+...+..+++.++..+.
T Consensus 335 RaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~~ 369 (456)
T PRK10590 335 RTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIP 369 (456)
T ss_pred ccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999887764
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.5e-45 Score=320.24 Aligned_cols=267 Identities=35% Similarity=0.601 Sum_probs=247.0
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCcc
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 88 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 88 (286)
++++..++|+.+...+...+..+++|+|+||+++.+++.+..+.++++++||+||+|++.+.++...+..++...+...|
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q 180 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQ 180 (460)
T ss_pred CcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccE
Confidence 78999999999998888888889999999999999999988888999999999999999999999999999999999999
Q ss_pred EEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHH
Q 023157 89 VGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 168 (286)
Q Consensus 89 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l 168 (286)
++++|||+++....+...++..+..+...... ....+.+.++.++... +...+..++......++||||+++..++.+
T Consensus 181 ~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l 258 (460)
T PRK11776 181 TLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDE-RLPALQRLLLHHQPESCVVFCNTKKECQEV 258 (460)
T ss_pred EEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHH-HHHHHHHHHHhcCCCceEEEECCHHHHHHH
Confidence 99999999999888888988888887776554 3455778888777766 888888988888888999999999999999
Q ss_pred HHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCC
Q 023157 169 TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 248 (286)
Q Consensus 169 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 248 (286)
++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|.
T Consensus 259 ~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~ 338 (460)
T PRK11776 259 ADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGS 338 (460)
T ss_pred HHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeccCcHHHHHHHHHHhchhccc
Q 023157 249 KGVAINFVTRDDERMLFDIQKFYNVVIEE 277 (286)
Q Consensus 249 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (286)
.|.+++++.+.+...+..+++.++..++.
T Consensus 339 ~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 339 KGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred cceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 99999999999999999999988876654
No 9
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.8e-45 Score=315.91 Aligned_cols=275 Identities=31% Similarity=0.543 Sum_probs=250.1
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
+.+.+.+++++..++|+.....+...+.++++|+|+||++|.+++.+..+.+.++++||+||||++.++++...+..+..
T Consensus 94 ~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~ 173 (434)
T PRK11192 94 RELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAA 173 (434)
T ss_pred HHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHH
Confidence 35667789999999999999888888888899999999999999998888889999999999999999999999999998
Q ss_pred hCCcCccEEEEEeecCh-hHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEec
Q 023157 82 LLPAKVQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVN 160 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~ 160 (286)
..+...|++++|||++. ....+...++..+..+...........+.+.+...+....+...+..+++.....++||||+
T Consensus 174 ~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~ 253 (434)
T PRK11192 174 ETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVR 253 (434)
T ss_pred hCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 88888999999999985 46667777778888887776666667788888877777778889999988777789999999
Q ss_pred chhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhh
Q 023157 161 TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI 240 (286)
Q Consensus 161 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~ 240 (286)
++.+++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|+||+
T Consensus 254 s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~ 333 (434)
T PRK11192 254 TRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRI 333 (434)
T ss_pred ChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEeccCcHHHHHHHHHHhchhcc
Q 023157 241 GRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 276 (286)
Q Consensus 241 GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (286)
||+||.|..|.+++++...|...+..+++++...+.
T Consensus 334 GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~~ 369 (434)
T PRK11192 334 GRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPLK 369 (434)
T ss_pred cccccCCCCceEEEEecHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999988776553
No 10
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.5e-45 Score=320.45 Aligned_cols=280 Identities=32% Similarity=0.568 Sum_probs=248.9
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
.+.+.+++++..+.||.....+...+..+++|+|+||++|.+++.++...++++++||+||||++.+++|...+..++..
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~ 297 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQA 297 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHh
Confidence 45667788999999998888777777788999999999999999988888999999999999999999999999999888
Q ss_pred CCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhcc--CcceEEEec
Q 023157 83 LPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLA--ITQSVIFVN 160 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~ivf~~ 160 (286)
++ +.|++++|||+++....+...+..++..+...........+.+....+.... +...+..++.... ..++||||+
T Consensus 298 l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~-k~~~l~~~l~~~~~~~~~~iVFv~ 375 (518)
T PLN00206 298 LS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQ-KKQKLFDILKSKQHFKPPAVVFVS 375 (518)
T ss_pred CC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchh-HHHHHHHHHHhhcccCCCEEEEcC
Confidence 84 6899999999999988888888888887777766555566777777766554 5555666665432 358999999
Q ss_pred chhhHHHHHHHHhc-CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhh
Q 023157 161 TRRKVDWLTDKMRS-RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 239 (286)
Q Consensus 161 ~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~ 239 (286)
++..++.+++.|.. .++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.+..+|+||
T Consensus 376 s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihR 455 (518)
T PLN00206 376 SRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQ 455 (518)
T ss_pred CchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHh
Confidence 99999999999975 58899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhc
Q 023157 240 IGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 284 (286)
Q Consensus 240 ~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 284 (286)
+||+||.|..|.+++++...+...+..+.+.++...+.+|++|.+
T Consensus 456 iGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 500 (518)
T PLN00206 456 IGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELAN 500 (518)
T ss_pred ccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 999999999999999999999999999999999999999999876
No 11
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.1e-45 Score=312.93 Aligned_cols=284 Identities=74% Similarity=1.162 Sum_probs=255.6
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
+++...+..+..+.|+.........+..+++|+|+||+++.+.+.+....++++++||+||+|++.++++...+..+++.
T Consensus 118 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~ 197 (401)
T PTZ00424 118 ALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKK 197 (401)
T ss_pred HHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhh
Confidence 34455677888899998887777777778899999999999999888888999999999999999998888888899999
Q ss_pred CCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecch
Q 023157 83 LPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTR 162 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~ 162 (286)
.+.+.|++++|||+++........+...+..+...........+.+++...+....+...+..++......++||||+++
T Consensus 198 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~ 277 (401)
T PTZ00424 198 LPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTR 277 (401)
T ss_pred CCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 98899999999999998888888888888777666655666777787777777666778888888877778999999999
Q ss_pred hhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcc
Q 023157 163 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR 242 (286)
Q Consensus 163 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR 242 (286)
.+++.+++.|...+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.|..+|+||+||
T Consensus 278 ~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GR 357 (401)
T PTZ00424 278 RKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGR 357 (401)
T ss_pred HHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhccC
Q 023157 243 SGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 286 (286)
Q Consensus 243 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 286 (286)
+||.|..|.+++++.+.+...+..+++.++.++++.++...+.|
T Consensus 358 agR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 401 (401)
T PTZ00424 358 SGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEVADYL 401 (401)
T ss_pred cccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcchhhcC
Confidence 99999999999999999999999999999999999998776543
No 12
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-47 Score=292.58 Aligned_cols=279 Identities=39% Similarity=0.677 Sum_probs=265.5
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
.+.+.+|+++...+||++..++.-.+..+.+++|+||++++++..+.-..++++.++|+|||+.++...|...+..++..
T Consensus 175 ~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~ 254 (459)
T KOG0326|consen 175 ELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISF 254 (459)
T ss_pred HHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHh
Confidence 56788899999999999999988888899999999999999999998889999999999999999999999999999999
Q ss_pred CCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecch
Q 023157 83 LPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTR 162 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~ 162 (286)
+|+..|+++.|||.|-....+...++.+|..+....+ .....+.+++.++++.. |+..+..++....-+..||||||.
T Consensus 255 lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e-Ltl~GvtQyYafV~e~q-KvhCLntLfskLqINQsIIFCNS~ 332 (459)
T KOG0326|consen 255 LPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE-LTLKGVTQYYAFVEERQ-KVHCLNTLFSKLQINQSIIFCNST 332 (459)
T ss_pred CCccceeeEEecccchhHHHHHHHhccCcceeehhhh-hhhcchhhheeeechhh-hhhhHHHHHHHhcccceEEEeccc
Confidence 9999999999999999999999999999998876654 67788999999888776 999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcc
Q 023157 163 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR 242 (286)
Q Consensus 163 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR 242 (286)
+.+|.+|+.+.+.|+++.++|++|.+++|..++..|+.|.++.||||+.+.+|+|++.++.||.+|+|.+.++|++|+||
T Consensus 333 ~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGR 412 (459)
T KOG0326|consen 333 NRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGR 412 (459)
T ss_pred hHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchh
Q 023157 243 SGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVA 283 (286)
Q Consensus 243 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 283 (286)
+||.|..|.++.++...|...+.++++.++++++.+|+..-
T Consensus 413 sGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iD 453 (459)
T KOG0326|consen 413 SGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNID 453 (459)
T ss_pred CccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCC
Confidence 99999999999999999999999999999999999997654
No 13
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.9e-45 Score=320.50 Aligned_cols=276 Identities=31% Similarity=0.524 Sum_probs=244.9
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcC-CCCCCCccEEEEehhhHhhccccHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEADEMLSRGFKDQIYDIF 80 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~ 80 (286)
++|.+..++++..++|+.....+...+.++++|+|+||++|.+++.+. .+.+..+++||+||+|++.++++...+..++
T Consensus 105 ~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il 184 (572)
T PRK04537 105 VKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLL 184 (572)
T ss_pred HHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHH
Confidence 456677899999999999998888888888999999999999998764 4668889999999999999999999999999
Q ss_pred HhCCc--CccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEE
Q 023157 81 QLLPA--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIF 158 (286)
Q Consensus 81 ~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf 158 (286)
+.++. ..|++++|||++.........++..+..+...........+.+.+..... ..+...+..++....+.++|||
T Consensus 185 ~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~-~~k~~~L~~ll~~~~~~k~LVF 263 (572)
T PRK04537 185 RRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPAD-EEKQTLLLGLLSRSEGARTMVF 263 (572)
T ss_pred HhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCH-HHHHHHHHHHHhcccCCcEEEE
Confidence 98876 67899999999998888888888888777666555555566666665544 4477888888887778899999
Q ss_pred ecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhh
Q 023157 159 VNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 238 (286)
Q Consensus 159 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q 238 (286)
|+++..++.+++.|.+.++.+..+|+++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|.+..+|+|
T Consensus 264 ~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvq 343 (572)
T PRK04537 264 VNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVH 343 (572)
T ss_pred eCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccC
Q 023157 239 RIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEEL 278 (286)
Q Consensus 239 ~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (286)
|+||+||.|..|.+++|++..+...+..+++.++..+...
T Consensus 344 RiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~ 383 (572)
T PRK04537 344 RIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVE 383 (572)
T ss_pred hhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCcc
Confidence 9999999999999999999999888999998887766433
No 14
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=7.3e-45 Score=322.11 Aligned_cols=270 Identities=38% Similarity=0.614 Sum_probs=248.3
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCcc
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 88 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 88 (286)
++++..++|+.+.+.+...+..+++|+|+||+++.+++.+..+.++++++||+||+|++..+++...+..++..++...|
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q 182 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQ 182 (629)
T ss_pred CceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCe
Confidence 78999999999988888888888999999999999999998889999999999999999999999999999999999999
Q ss_pred EEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHH
Q 023157 89 VGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 168 (286)
Q Consensus 89 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l 168 (286)
++++|||+++....+.+.++.++..+.+.......+.+.+.+..+.... +...+..++......++||||+++..++.+
T Consensus 183 ~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~-k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l 261 (629)
T PRK11634 183 TALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR-KNEALVRFLEAEDFDAAIIFVRTKNATLEV 261 (629)
T ss_pred EEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhh-HHHHHHHHHHhcCCCCEEEEeccHHHHHHH
Confidence 9999999999988888899998888877766666667777776666544 778888888877778999999999999999
Q ss_pred HHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCC
Q 023157 169 TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 248 (286)
Q Consensus 169 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 248 (286)
++.|...++.+..+|+++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|.|.+..+|+||+||+||.|.
T Consensus 262 ~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr 341 (629)
T PRK11634 262 AEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 341 (629)
T ss_pred HHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeccCcHHHHHHHHHHhchhcccCC
Q 023157 249 KGVAINFVTRDDERMLFDIQKFYNVVIEELP 279 (286)
Q Consensus 249 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (286)
.|.+++++.+.+...+..+++.++..+++.+
T Consensus 342 ~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~ 372 (629)
T PRK11634 342 AGRALLFVENRERRLLRNIERTMKLTIPEVE 372 (629)
T ss_pred cceEEEEechHHHHHHHHHHHHhCCCcceec
Confidence 9999999999999999999999888876654
No 15
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=6.5e-45 Score=298.92 Aligned_cols=281 Identities=33% Similarity=0.592 Sum_probs=260.2
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
+|++.+|+++..+.||.+.+++--.+..+|+|+|+||.+|.+.+.+..+.+.++.++|.||++.+.+.+|.+.+..++..
T Consensus 344 kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~ 423 (673)
T KOG0333|consen 344 KFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQ 423 (673)
T ss_pred HhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHh
Confidence 68889999999999999999887788889999999999999999998888999999999999999999999999999999
Q ss_pred CCcC-------------------------ccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchh
Q 023157 83 LPAK-------------------------VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEE 137 (286)
Q Consensus 83 ~~~~-------------------------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 137 (286)
+|.. .|.+++|||+++....+.+.++..|+.+.+.....+.+.+.|.+..+....
T Consensus 424 mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~ 503 (673)
T KOG0333|consen 424 MPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDE 503 (673)
T ss_pred CCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchH
Confidence 8631 479999999999999999999999999999999888888999988887766
Q ss_pred hHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCC
Q 023157 138 WKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 217 (286)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid 217 (286)
+...+.+++......++|||+|+.+.|+.+++.|.+.|+.+..+||+-++++|..++..|++|..+|||||+++++|+|
T Consensus 504 -k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGID 582 (673)
T KOG0333|consen 504 -KRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGID 582 (673)
T ss_pred -HHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCC
Confidence 6899999998887789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhc-hhcccCCcchhc
Q 023157 218 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN-VVIEELPSNVAD 284 (286)
Q Consensus 218 i~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ 284 (286)
+|+|.+||.+|.+.|..+|.||+||+||.|+.|.++.|+++.|...+..+...+. ..-...|..|++
T Consensus 583 IpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~ 650 (673)
T KOG0333|consen 583 IPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELAN 650 (673)
T ss_pred CCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhcc
Confidence 9999999999999999999999999999999999999999999999888877665 455566666543
No 16
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.2e-44 Score=310.93 Aligned_cols=273 Identities=31% Similarity=0.558 Sum_probs=242.3
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHh-CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF 80 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~ 80 (286)
+++.+.+++++..++|+.....+.+.+. +.++|+|+||++|.+++.+....++++++|||||+|.+.+.++...+..++
T Consensus 183 ~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~ 262 (475)
T PRK01297 183 AALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQII 262 (475)
T ss_pred HHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHH
Confidence 3566778999999999988776666554 578999999999999988888889999999999999999999999999998
Q ss_pred HhCCc--CccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEE
Q 023157 81 QLLPA--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIF 158 (286)
Q Consensus 81 ~~~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf 158 (286)
...+. +.|++++|||++.+.......+...+..+...........+.+.+..+.... +...+..++......++|||
T Consensus 263 ~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~ll~~~~~~~~IVF 341 (475)
T PRK01297 263 RQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSD-KYKLLYNLVTQNPWERVMVF 341 (475)
T ss_pred HhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchh-HHHHHHHHHHhcCCCeEEEE
Confidence 88754 5689999999998888888888888887777666555556666666555544 67777788877777899999
Q ss_pred ecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhh
Q 023157 159 VNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 238 (286)
Q Consensus 159 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q 238 (286)
|+++.+++.+++.|...++.+..+||+++.++|.++++.|++|+.++||||+++++|+|+|++++||++++|.|..+|+|
T Consensus 342 ~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Q 421 (475)
T PRK01297 342 ANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVH 421 (475)
T ss_pred eCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhc
Q 023157 239 RIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVI 275 (286)
Q Consensus 239 ~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (286)
|+||+||.|..|.++++++.+|...+..++++++..+
T Consensus 422 r~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 422 RIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred hhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999998876
No 17
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-42 Score=277.31 Aligned_cols=278 Identities=31% Similarity=0.542 Sum_probs=256.6
Q ss_pred cccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCc
Q 023157 6 DYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA 85 (286)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~ 85 (286)
.+-|.+..+++|+-+..++.+.++++.+|+++||.+|.++...+.+.+.++.++|+|||+.+++.+|.+++.+++-...+
T Consensus 318 syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRP 397 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRP 397 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCC
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccc-cccceeEEEEccchhhHHHHHHHHHhhc-cCcceEEEecchh
Q 023157 86 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT-LEGIKQFYVNVEKEEWKLETLCDLYETL-AITQSVIFVNTRR 163 (286)
Q Consensus 86 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivf~~~~~ 163 (286)
..|.++.|||.|+....+...++.+|+.+.+..-... ...+.+.+ .+.....+...+..+.... +..|+||||.+..
T Consensus 398 DRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~ 476 (629)
T KOG0336|consen 398 DRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKV 476 (629)
T ss_pred cceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-EecccHHHHHHHHHHHHhcCCCceEEEEEechh
Confidence 9999999999999999999999999998888776543 34566666 5555566888888888754 5679999999999
Q ss_pred hHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhccc
Q 023157 164 KVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 243 (286)
Q Consensus 164 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~ 243 (286)
.|.-|...|.-.|+...-+||+-.+.+|...++.|++|+++|||||+.+++|+|+|+++||+.||+|.+..+|+||+||+
T Consensus 477 ~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrt 556 (629)
T KOG0336|consen 477 MADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRT 556 (629)
T ss_pred hhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhccc
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhc
Q 023157 244 GRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 284 (286)
Q Consensus 244 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 284 (286)
||.|..|..+.++...|-..+..+.+.+...-+++|++|..
T Consensus 557 GRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~ 597 (629)
T KOG0336|consen 557 GRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVR 597 (629)
T ss_pred ccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHH
Confidence 99999999999999999999999999999999999999865
No 18
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-42 Score=281.15 Aligned_cols=284 Identities=32% Similarity=0.495 Sum_probs=269.2
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
++|++.+|+++..++||-+..++.+-++.++.|+||||++|.+++......+.++.++|+||++.+.+.+|.+++..|..
T Consensus 317 Kkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~ 396 (731)
T KOG0339|consen 317 KKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQ 396 (731)
T ss_pred HHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHH-hhccCcceEEEec
Q 023157 82 LLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY-ETLAITQSVIFVN 160 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ivf~~ 160 (286)
...+..|++++|||+......+.+.++.+|+.+....-......+.+....+++...|+.-+...+ .....+++|+|+.
T Consensus 397 hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVT 476 (731)
T KOG0339|consen 397 HIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVT 476 (731)
T ss_pred hcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEe
Confidence 999999999999999999999999999999999888777778899999999999988876655444 4556689999999
Q ss_pred chhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhh
Q 023157 161 TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI 240 (286)
Q Consensus 161 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~ 240 (286)
-...++.++..|+-.++++..+||++.+.+|.+++..|+.+...||++|+++.+|+|+|++..|+.+|.-.+...+.||+
T Consensus 477 Kk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththri 556 (731)
T KOG0339|consen 477 KKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRI 556 (731)
T ss_pred ccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhcc
Q 023157 241 GRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 285 (286)
Q Consensus 241 GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 285 (286)
||.||.|..|.+|+++.+.|.+....+-+.+.-.-+.+|..|-+|
T Consensus 557 grtgRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dl 601 (731)
T KOG0339|consen 557 GRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDL 601 (731)
T ss_pred hhcccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHH
Confidence 999999999999999999999999999999999999999998765
No 19
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-42 Score=284.19 Aligned_cols=281 Identities=33% Similarity=0.532 Sum_probs=258.0
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhc-cccHHHHHHHHH
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQ 81 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~ 81 (286)
++.-..++++..++|+.+...+.....+++||+|+||++|.+++....+.+++++++|+|||+.+.+ .+|.+.+.++..
T Consensus 174 k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~ 253 (482)
T KOG0335|consen 174 KFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVE 253 (482)
T ss_pred hhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhc
Confidence 4455568899999999999999999999999999999999999999999999999999999999998 899999999988
Q ss_pred hCCc----CccEEEEEeecChhHHHHHHHhcCC-CeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhcc----C
Q 023157 82 LLPA----KVQVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLA----I 152 (286)
Q Consensus 82 ~~~~----~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~----~ 152 (286)
.... +.|.+++|||.+.++..+...++.+ ...+.+........++.+...++...+ |...+..++.... .
T Consensus 254 ~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~-kr~~Lldll~~~~~~~~~ 332 (482)
T KOG0335|consen 254 QLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEME-KRSKLLDLLNKDDGPPSD 332 (482)
T ss_pred ccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchh-hHHHHHHHhhcccCCccc
Confidence 7643 6789999999999998888888776 677888888888999999999999888 5556666655332 3
Q ss_pred c-----ceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEc
Q 023157 153 T-----QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 227 (286)
Q Consensus 153 ~-----~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~ 227 (286)
+ +++|||.+.+.|..++..|...++....+|+..++.+|.+.+..|+.|+..+||||+++++|+|+|+|++||.|
T Consensus 333 ~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIny 412 (482)
T KOG0335|consen 333 GEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINY 412 (482)
T ss_pred CCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEe
Confidence 3 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhc
Q 023157 228 DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 284 (286)
Q Consensus 228 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 284 (286)
|.|.+..+|+||+||+||.|..|.+..|++..+......+.+.+...-+++|.||..
T Consensus 413 DmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP~wl~~ 469 (482)
T KOG0335|consen 413 DMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVPQWLSE 469 (482)
T ss_pred ecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCcHHHHh
Confidence 999999999999999999999999999999999999999999999999999999975
No 20
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-41 Score=275.90 Aligned_cols=260 Identities=33% Similarity=0.586 Sum_probs=236.1
Q ss_pred cCceEEEEEcCcchHHHHHHHhC-CCcEEEeCcHHHHHHHhcCC--CCCCCccEEEEehhhHhhccccHHHHHHHHHhCC
Q 023157 8 LGVKVHACVGGTSVREDQRILQA-GVHVVVGTPGRVFDMLRRQS--LRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 84 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~-~~~iii~Tp~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~ 84 (286)
.++.+..+.||.+.++..+.+.+ +++|+|+||++|.+++.+.. ++..+++++|+|||+.+.+.+|...+..|++.+|
T Consensus 107 ~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LP 186 (567)
T KOG0345|consen 107 PNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLP 186 (567)
T ss_pred hccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhcc
Confidence 57889999999999888887765 78999999999999998844 3445899999999999999999999999999999
Q ss_pred cCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCcc--ccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecch
Q 023157 85 AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDEL--TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTR 162 (286)
Q Consensus 85 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~ 162 (286)
++.+.-++|||.......+.+..+++|+.+.+...+. .+..+...+..|++.+ |...+.+++......++|||++|.
T Consensus 187 KQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~e-K~~~lv~~L~~~~~kK~iVFF~TC 265 (567)
T KOG0345|consen 187 KQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADE-KLSQLVHLLNNNKDKKCIVFFPTC 265 (567)
T ss_pred cccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHH-HHHHHHHHHhccccccEEEEecCc
Confidence 9999999999999999999999999999998887765 6777888888888877 899999999988889999999999
Q ss_pred hhHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhh
Q 023157 163 RKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI 240 (286)
Q Consensus 163 ~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~ 240 (286)
..+++.+..+... ...+..+||.|++..|..+++.|......+|+||+++++|+|+|++++||++|+|.+++.|+||+
T Consensus 266 asVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~ 345 (567)
T KOG0345|consen 266 ASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRC 345 (567)
T ss_pred chHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhc
Confidence 9999999988765 56889999999999999999999998889999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEeccCcHHHHHHHH
Q 023157 241 GRSGRFGRKGVAINFVTRDDERMLFDIQ 268 (286)
Q Consensus 241 GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 268 (286)
||++|.|..|.+++|+-+.+..+.+-+.
T Consensus 346 GRTaR~gr~G~Aivfl~p~E~aYveFl~ 373 (567)
T KOG0345|consen 346 GRTARAGREGNAIVFLNPREEAYVEFLR 373 (567)
T ss_pred chhhhccCccceEEEecccHHHHHHHHH
Confidence 9999999999999999996665554443
No 21
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.3e-41 Score=275.30 Aligned_cols=264 Identities=30% Similarity=0.513 Sum_probs=233.2
Q ss_pred ccccc-CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhc-CCCCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 4 LGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 4 ~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
+.+.. ++.+..+.||.+...+...+.++++|+|+||++|.+++.+ +.+...+++++|+|||+++++.+|...+..+..
T Consensus 177 Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~ 256 (543)
T KOG0342|consen 177 LLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIK 256 (543)
T ss_pred HHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHH
Confidence 34444 7889999999998888877777999999999999999998 445566678999999999999999999999999
Q ss_pred hCCcCccEEEEEeecChhHHHHHHHhcCC-CeEEEecCC--ccccccceeEEEEccchhhHHHHHHHHHhhccC-cceEE
Q 023157 82 LLPAKVQVGVFSATMPPEALEITRKFMNK-PVRILVKRD--ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAI-TQSVI 157 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~iv 157 (286)
.+|+..|.+++|||.++....+.+..+.. +..+..... ......+.|.+..++... .+..+..+++.... .++||
T Consensus 257 ~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~-~f~ll~~~LKk~~~~~KiiV 335 (543)
T KOG0342|consen 257 ILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS-RFSLLYTFLKKNIKRYKIIV 335 (543)
T ss_pred hccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc-hHHHHHHHHHHhcCCceEEE
Confidence 99999999999999999999988876665 555555443 234466788777777666 46667777766554 89999
Q ss_pred EecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhh
Q 023157 158 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYL 237 (286)
Q Consensus 158 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~ 237 (286)
||+|...+..+++.|+...++|..+||++++..|..+..+|+..+..||+||+++++|+|+|++++||++|+|.++.+|+
T Consensus 336 F~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YI 415 (543)
T KOG0342|consen 336 FFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYI 415 (543)
T ss_pred EechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHH
Confidence 99999999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCcceEEEEeccCcHHHHHHHH
Q 023157 238 HRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 268 (286)
Q Consensus 238 Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 268 (286)
||+||+||.|+.|.+++++.+.+..++..++
T Consensus 416 HRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 416 HRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred HHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999999999999999888
No 22
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-41 Score=276.78 Aligned_cols=275 Identities=29% Similarity=0.498 Sum_probs=244.2
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCC-CCCCCccEEEEehhhHhhccccHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS-LRPDYIKMFVLDEADEMLSRGFKDQIYDIF 80 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~ 80 (286)
.+.++..+.....+.||.....+...+. +.+|+||||++|+.++..+. +..+++.++|+|||+.+++.+|...+..|+
T Consensus 162 ~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii 240 (758)
T KOG0343|consen 162 NKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAII 240 (758)
T ss_pred HHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHH
Confidence 3566777889999999999887776664 58999999999999997644 567889999999999999999999999999
Q ss_pred HhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCC--ccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEE
Q 023157 81 QLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD--ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIF 158 (286)
Q Consensus 81 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf 158 (286)
+.+|+..|.+++|||.+.....+.+..+.+|..+.+... ...+.++.++++.++... |+..+..+++.+...+.|||
T Consensus 241 ~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~-Ki~~L~sFI~shlk~K~iVF 319 (758)
T KOG0343|consen 241 ENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLED-KIDMLWSFIKSHLKKKSIVF 319 (758)
T ss_pred HhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhh-HHHHHHHHHHhccccceEEE
Confidence 999999999999999999999999999999987777633 466788899998888777 99999999999998999999
Q ss_pred ecchhhHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchh
Q 023157 159 VNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY 236 (286)
Q Consensus 159 ~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~ 236 (286)
+.|.+++..+++.+.+. |++...+||.|++..|..++..|.+.+.-||+||+++++|+|+|.+++||++|.|.++.+|
T Consensus 320 ~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tY 399 (758)
T KOG0343|consen 320 LSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTY 399 (758)
T ss_pred EehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHH
Confidence 99999999999999875 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCcceEEEEeccCcH-HHHHHHHHHhchhcccCC
Q 023157 237 LHRIGRSGRFGRKGVAINFVTRDDE-RMLFDIQKFYNVVIEELP 279 (286)
Q Consensus 237 ~Q~~GR~~R~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 279 (286)
+||+||++|.+..|.+++++.+.+. .+...+++.. .+++++.
T Consensus 400 IHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I~i~~i~ 442 (758)
T KOG0343|consen 400 IHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-IPIKEIK 442 (758)
T ss_pred HHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-CCHHhhc
Confidence 9999999999999999999999984 4445555443 4444443
No 23
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-41 Score=266.38 Aligned_cols=282 Identities=76% Similarity=1.149 Sum_probs=266.6
Q ss_pred cccccccCceEEEEEcCcchHHHH-HHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQ-RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF 80 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~ 80 (286)
++++...+.+++.+.|+.....+. .+.+..+.|+++||++..+.+....+....+++.|+||++.+...++...+..++
T Consensus 115 ~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if 194 (397)
T KOG0327|consen 115 RALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIF 194 (397)
T ss_pred HhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHH
Confidence 456778899999999998877444 4555579999999999999999888888889999999999999999999999999
Q ss_pred HhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEec
Q 023157 81 QLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVN 160 (286)
Q Consensus 81 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~ 160 (286)
+.+|++.|++++|||.+++.....+.+..+|..+.....+.....+.+++.....+. |+..++.+++ .....++|||
T Consensus 195 ~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~dl~~--~~~q~~if~n 271 (397)
T KOG0327|consen 195 QELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCDLYR--RVTQAVIFCN 271 (397)
T ss_pred HHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHHHHHH--hhhcceEEec
Confidence 999999999999999999999999999999999999999999999999999998888 9999999999 5679999999
Q ss_pred chhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhh
Q 023157 161 TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI 240 (286)
Q Consensus 161 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~ 240 (286)
++..+..+...|..++..+..+|+++.+.+|..++..|+.|..+|||+|+.+++|+|+..++.|+.+++|.....|++|+
T Consensus 272 t~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~ 351 (397)
T KOG0327|consen 272 TRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRI 351 (397)
T ss_pred chhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhccC
Q 023157 241 GRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 286 (286)
Q Consensus 241 GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 286 (286)
||+||.|.+|.++.++...+...+.+++++++.+++++|+..+.|+
T Consensus 352 gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~~l~ 397 (397)
T KOG0327|consen 352 GRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFADLL 397 (397)
T ss_pred ccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchhhcC
Confidence 9999999999999999999999999999999999999999999875
No 24
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-41 Score=277.32 Aligned_cols=269 Identities=33% Similarity=0.560 Sum_probs=246.8
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCC-CCCCCccEEEEehhhHhhccccHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS-LRPDYIKMFVLDEADEMLSRGFKDQIYDIF 80 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~ 80 (286)
+++..+++|.++.+.||.+...+...+...+||+|+||++|.+++++++ +.++++.++|+|||+.+++.+|...+..+.
T Consensus 273 ~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii 352 (691)
T KOG0338|consen 273 KQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEII 352 (691)
T ss_pred HHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999999999854 678999999999999999999999999999
Q ss_pred HhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccc--hhhHHHHHHHHHhhccCcceEEE
Q 023157 81 QLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK--EEWKLETLCDLYETLAITQSVIF 158 (286)
Q Consensus 81 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~ivf 158 (286)
...+++.|.+++|||++.....+....+.+|+.+.+.......+.+++-|....+ +..+-..+..++...-..++|||
T Consensus 353 ~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivF 432 (691)
T KOG0338|consen 353 RLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVF 432 (691)
T ss_pred HhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEE
Confidence 9999999999999999999999999999999999999887777777776664442 22355666677776667899999
Q ss_pred ecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhh
Q 023157 159 VNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 238 (286)
Q Consensus 159 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q 238 (286)
+.+.+.|..+.-.|--.|..+.-+||.+++.+|...++.|+.++++|||||+++++|+|++.+..||.|..|.+...|+|
T Consensus 433 v~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~H 512 (691)
T KOG0338|consen 433 VRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLH 512 (691)
T ss_pred EehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHH
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCcceEEEEeccCcHHHHHHHHHH
Q 023157 239 RIGRSGRFGRKGVAINFVTRDDERMLFDIQKF 270 (286)
Q Consensus 239 ~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~ 270 (286)
|+||+.|.|..|+.++|+-..+...++.+.+.
T Consensus 513 RVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 513 RVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred HhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 99999999999999999999999988888765
No 25
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-40 Score=262.36 Aligned_cols=274 Identities=41% Similarity=0.714 Sum_probs=246.7
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhc-CCCCCCCccEEEEehhhHhhc-cccHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLS-RGFKDQIYDI 79 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i 79 (286)
++.+++.++..++...+........+ ...|+|+||+.+.+++.+ ..+.+..+..+|+|||+.+.+ .||.+.-.++
T Consensus 181 ~eMGKf~~ita~yair~sk~~rG~~i---~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI 257 (477)
T KOG0332|consen 181 EEMGKFTELTASYAIRGSKAKRGNKL---TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRI 257 (477)
T ss_pred HHhcCceeeeEEEEecCcccccCCcc---hhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhh
Confidence 45677778888887776532221111 246999999999999987 778889999999999998875 5788888899
Q ss_pred HHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEe
Q 023157 80 FQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFV 159 (286)
Q Consensus 80 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~ 159 (286)
....|++.|++.+|||.......+......++..+.+..++....++.+++..|+....|...+.+++....-+..||||
T Consensus 258 ~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc 337 (477)
T KOG0332|consen 258 MRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFC 337 (477)
T ss_pred hhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCC------Cc
Q 023157 160 NTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------QP 233 (286)
Q Consensus 160 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~------s~ 233 (286)
.++..|.+++..|...|+.+..+||+|..++|..+++.|++|+.+|||+|+++++|+|++.++.||.||.|. +.
T Consensus 338 ~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~ 417 (477)
T KOG0332|consen 338 HTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDY 417 (477)
T ss_pred eehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999984 67
Q ss_pred chhhhhhcccccCCCcceEEEEeccC-cHHHHHHHHHHhchhcccC
Q 023157 234 ENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEEL 278 (286)
Q Consensus 234 ~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 278 (286)
..|+||+||+||.|+.|.++.+++.. ....++.++++++..+.++
T Consensus 418 etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~ 463 (477)
T KOG0332|consen 418 ETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRL 463 (477)
T ss_pred HHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceec
Confidence 89999999999999999999998876 6778889999997766554
No 26
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-39 Score=256.57 Aligned_cols=279 Identities=35% Similarity=0.499 Sum_probs=244.3
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcC----CCCCCCccEEEEehhhHhhccccHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ----SLRPDYIKMFVLDEADEMLSRGFKDQIY 77 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~----~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 77 (286)
..+++..++++..++||...-.+...+.+.++++|+||+++.+.+..+ ...+++++++|+|||+.+.+..|...+.
T Consensus 96 ~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~ 175 (442)
T KOG0340|consen 96 IALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILE 175 (442)
T ss_pred HHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHh
Confidence 356788999999999999998888999999999999999999998875 2357789999999999999999999999
Q ss_pred HHHHhCCcCccEEEEEeecChhHHHHHHHhcCC--CeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhc---cC
Q 023157 78 DIFQLLPAKVQVGVFSATMPPEALEITRKFMNK--PVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL---AI 152 (286)
Q Consensus 78 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~---~~ 152 (286)
.+.+-+|...|.+++|||+.+...++....... ...............+.+.+..++... +-.-+..+++.. +.
T Consensus 176 ~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~v-kdaYLv~~Lr~~~~~~~ 254 (442)
T KOG0340|consen 176 GIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDV-KDAYLVHLLRDFENKEN 254 (442)
T ss_pred hhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhh-hHHHHHHHHhhhhhccC
Confidence 999999988899999999998877766655554 344444455666777888888777665 444444444433 45
Q ss_pred cceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 232 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s 232 (286)
..++||+++..+|+.++..|+..+..+..+|+.|++.+|...+.+|+++..+|||||+++++|+|+|.++.||.++.|.+
T Consensus 255 ~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~ 334 (442)
T KOG0340|consen 255 GSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRD 334 (442)
T ss_pred ceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcc
Q 023157 233 PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSN 281 (286)
Q Consensus 233 ~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (286)
+.+|+||+||..|.|..|.++.++...|.+....+++..++..++.+..
T Consensus 335 P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~~ 383 (442)
T KOG0340|consen 335 PKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNKV 383 (442)
T ss_pred HHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999988876653
No 27
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.6e-40 Score=264.43 Aligned_cols=275 Identities=34% Similarity=0.618 Sum_probs=248.0
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCcc
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 88 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 88 (286)
.++...+.||.+..++...+.++.+|+|+||++|.+++.+..+.++-+.++.+||++.+.+.+|...+..+++.+....|
T Consensus 280 ~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQ 359 (610)
T KOG0341|consen 280 ELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQ 359 (610)
T ss_pred hhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhh
Confidence 46788899999999999999999999999999999999998888988999999999999999999999999999999999
Q ss_pred EEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHH
Q 023157 89 VGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWL 168 (286)
Q Consensus 89 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l 168 (286)
.+++|||+|.....+.+..+.+|+.+.+.......-++.+...++..+. |+.-+.+-++... .+++||+.....+..+
T Consensus 360 TLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEa-KiVylLeCLQKT~-PpVLIFaEkK~DVD~I 437 (610)
T KOG0341|consen 360 TLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEA-KIVYLLECLQKTS-PPVLIFAEKKADVDDI 437 (610)
T ss_pred eeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhh-hhhhHHHHhccCC-CceEEEeccccChHHH
Confidence 9999999999999999999999999999887766555554444444333 5555555555433 6999999999999999
Q ss_pred HHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCC
Q 023157 169 TDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 248 (286)
Q Consensus 169 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 248 (286)
.++|--.|..+..+||+-.+++|...++.|+.|+.+|||||++++.|+|+|++.+||.||.|.....|++|+||+||.|+
T Consensus 438 hEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~ 517 (610)
T KOG0341|consen 438 HEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGK 517 (610)
T ss_pred HHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEeccC-cHHHHHHHHHHhchhcccCCcchhcc
Q 023157 249 KGVAINFVTRD-DERMLFDIQKFYNVVIEELPSNVADL 285 (286)
Q Consensus 249 ~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l 285 (286)
.|.+.+|+... +...+..+...+...-+++|..|+.|
T Consensus 518 ~GiATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L 555 (610)
T KOG0341|consen 518 TGIATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAEL 555 (610)
T ss_pred cceeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHh
Confidence 99999999886 67778899999999999999998765
No 28
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.9e-38 Score=253.09 Aligned_cols=265 Identities=27% Similarity=0.402 Sum_probs=238.4
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCC-CCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCc
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS-LRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV 87 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~-~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~ 87 (286)
.+++.-++++.+.......+.+.++|+|+||..++.++..+. ..++.++++|+|||+.++..|+...+..+.+.+|+..
T Consensus 123 ~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~ 202 (569)
T KOG0346|consen 123 DLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIY 202 (569)
T ss_pred hhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCCchh
Confidence 466777777777776677788899999999999999998766 6778899999999999999999999999999999999
Q ss_pred cEEEEEeecChhHHHHHHHhcCCCeEEEecCCccc-cccceeEEEEccchhhHHHHHHHHHh-hccCcceEEEecchhhH
Q 023157 88 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELT-LEGIKQFYVNVEKEEWKLETLCDLYE-TLAITQSVIFVNTRRKV 165 (286)
Q Consensus 88 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ivf~~~~~~~ 165 (286)
|.++||||+.++...+.+.++.+|+.+.....+.. +..+.|++..|...+ |...+..+++ ..-.+++|||+|+.+.+
T Consensus 203 Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~D-KflllyallKL~LI~gKsliFVNtIdr~ 281 (569)
T KOG0346|consen 203 QCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEED-KFLLLYALLKLRLIRGKSLIFVNTIDRC 281 (569)
T ss_pred hheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccch-hHHHHHHHHHHHHhcCceEEEEechhhh
Confidence 99999999999999999999999999988877654 467899999999555 7777777776 44568999999999999
Q ss_pred HHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----------------------------------
Q 023157 166 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD----------------------------------- 210 (286)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~----------------------------------- 210 (286)
.++.-.|...|+..+++++.+|.+.|..++++|+.|-++++|||+
T Consensus 282 YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~ 361 (569)
T KOG0346|consen 282 YRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKES 361 (569)
T ss_pred HHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchh
Confidence 999999999999999999999999999999999999999999998
Q ss_pred CCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchh
Q 023157 211 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVV 274 (286)
Q Consensus 211 ~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 274 (286)
..++|+|+..+.+|+.+|.|.++..|+||+||++|.+++|.+..|+.+.+......+++.+...
T Consensus 362 GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 362 GVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDE 425 (569)
T ss_pred chhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhH
Confidence 2468999999999999999999999999999999999999999999999998888887777664
No 29
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.7e-37 Score=279.30 Aligned_cols=257 Identities=20% Similarity=0.277 Sum_probs=197.1
Q ss_pred cCceEEEEEcCcchHHHHHHHh------CCCcEEEeCcHHHHH--HHhc---CCCCCCCccEEEEehhhHhhccc--cHH
Q 023157 8 LGVKVHACVGGTSVREDQRILQ------AGVHVVVGTPGRVFD--MLRR---QSLRPDYIKMFVLDEADEMLSRG--FKD 74 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~------~~~~iii~Tp~~l~~--~~~~---~~~~~~~~~~iIiDE~h~~~~~~--~~~ 74 (286)
.|+++..+.|+....++...+. +.++|+++||+++.. .+.+ .......+.+|||||||++.+|+ |.+
T Consensus 523 ~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRp 602 (1195)
T PLN03137 523 ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRP 602 (1195)
T ss_pred CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHH
Confidence 5899999999988777665543 468999999999853 1211 11123447899999999999987 666
Q ss_pred HHHHH---HHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhh-c
Q 023157 75 QIYDI---FQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET-L 150 (286)
Q Consensus 75 ~~~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~-~ 150 (286)
.+..+ ...+ +..+++++|||+++.....+...+........ ..+..++++... ..+........+..++.. .
T Consensus 603 dYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vf-r~Sf~RpNL~y~--Vv~k~kk~le~L~~~I~~~~ 678 (1195)
T PLN03137 603 DYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLWYS--VVPKTKKCLEDIDKFIKENH 678 (1195)
T ss_pred HHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe-ecccCccceEEE--EeccchhHHHHHHHHHHhcc
Confidence 66543 3344 46789999999998877765554443222221 122333433222 223322234455555543 3
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 230 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~ 230 (286)
.+.+.||||.+++.++.+++.|...|+.+..+||+|++++|..+++.|..|+.+|||||.++++|||+|++++||+++.|
T Consensus 679 ~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlP 758 (1195)
T PLN03137 679 FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLP 758 (1195)
T ss_pred cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHH
Q 023157 231 TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 268 (286)
Q Consensus 231 ~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 268 (286)
.|...|+||+||+||.|.+|.|+++++..|......+.
T Consensus 759 kSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 759 KSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred CCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999887766655554
No 30
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.3e-37 Score=267.83 Aligned_cols=256 Identities=21% Similarity=0.290 Sum_probs=194.4
Q ss_pred ccCceEEEEEcCcchHHHHHHH----hCCCcEEEeCcHHHHHHH-hcCCC-CCCCccEEEEehhhHhhccc--cHHHHHH
Q 023157 7 YLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDML-RRQSL-RPDYIKMFVLDEADEMLSRG--FKDQIYD 78 (286)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~----~~~~~iii~Tp~~l~~~~-~~~~~-~~~~~~~iIiDE~h~~~~~~--~~~~~~~ 78 (286)
..|+.+..+.|+...++....+ .+.++|+++||+++.... ....+ ...++++|||||||++.+|+ |...+..
T Consensus 73 ~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~ 152 (470)
T TIGR00614 73 ASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKA 152 (470)
T ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHH
Confidence 3578888888887766544332 346899999999875322 11111 45678999999999998876 4555443
Q ss_pred ---HHHhCCcCccEEEEEeecChhHHHHHHHhcC--CCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHh-hccC
Q 023157 79 ---IFQLLPAKVQVGVFSATMPPEALEITRKFMN--KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE-TLAI 152 (286)
Q Consensus 79 ---i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~-~~~~ 152 (286)
+...+ ++.+++++|||+++.........+. .+..... +...+++..... .........+..++. ..++
T Consensus 153 l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~~~v~--~~~~~~~~~l~~~l~~~~~~ 226 (470)
T TIGR00614 153 LGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLYYEVR--RKTPKILEDLLRFIRKEFKG 226 (470)
T ss_pred HHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcEEEEE--eCCccHHHHHHHHHHHhcCC
Confidence 34444 4678999999999877665544432 3322221 122233322222 111124445555554 4566
Q ss_pred cceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQ 232 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s 232 (286)
.++||||+++++++.+++.|+..|+.+..+|++|++++|..+++.|.+|+.+|||||+++++|+|+|++++||++++|.|
T Consensus 227 ~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s 306 (470)
T TIGR00614 227 KSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKS 306 (470)
T ss_pred CceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCC
Confidence 67799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhcccccCCCcceEEEEeccCcHHHHHHHH
Q 023157 233 PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 268 (286)
Q Consensus 233 ~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 268 (286)
...|+||+||+||.|.+|.+++++++.|...+..+.
T Consensus 307 ~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 307 MESYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred HHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 999999999999999999999999998877666654
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.5e-37 Score=278.23 Aligned_cols=265 Identities=18% Similarity=0.247 Sum_probs=199.7
Q ss_pred cCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhc-C---CCCCCCccEEEEehhhHhhccccHHHH-------
Q 023157 8 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-Q---SLRPDYIKMFVLDEADEMLSRGFKDQI------- 76 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~-~---~~~~~~~~~iIiDE~h~~~~~~~~~~~------- 76 (286)
.++++..++|+.+.+++ ..+.++++|+|+||+++...+.. . ...++++++||+||+|.+.+ .|+..+
T Consensus 107 ~~i~v~~~~Gdt~~~~r-~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL 184 (742)
T TIGR03817 107 RGVRPATYDGDTPTEER-RWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRL 184 (742)
T ss_pred CCeEEEEEeCCCCHHHH-HHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHH
Confidence 47889999999886544 45556789999999999754322 1 12367899999999998754 344433
Q ss_pred HHHHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccc----------------hhhHH
Q 023157 77 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK----------------EEWKL 140 (286)
Q Consensus 77 ~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------------~~~~~ 140 (286)
..+....+.++|++++|||+++.. +....+.+.+..+. ..+... ....+...+.+. ...+.
T Consensus 185 ~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~~~i-~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~ 261 (742)
T TIGR03817 185 RRLCARYGASPVFVLASATTADPA-AAASRLIGAPVVAV-TEDGSP-RGARTVALWEPPLTELTGENGAPVRRSASAEAA 261 (742)
T ss_pred HHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCeEEE-CCCCCC-cCceEEEEecCCccccccccccccccchHHHHH
Confidence 333344567789999999998775 45666777665442 222221 111222222121 11244
Q ss_pred HHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC--------CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCC
Q 023157 141 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR--------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL 212 (286)
Q Consensus 141 ~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 212 (286)
..+..+++. +.++||||+|++.++.++..+++. +..+..+||++++++|.+++++|++|+.++||||+++
T Consensus 262 ~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~l 339 (742)
T TIGR03817 262 DLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNAL 339 (742)
T ss_pred HHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchH
Confidence 555555553 579999999999999999988653 5678899999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEecc--CcHHHHHHHHHHhchhcccCC
Q 023157 213 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR--DDERMLFDIQKFYNVVIEELP 279 (286)
Q Consensus 213 ~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 279 (286)
++|+|+|++++||+++.|.+..+|+||+||+||.|..|.++++... .|...+..++++++..++...
T Consensus 340 erGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~~~ 408 (742)
T TIGR03817 340 ELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEATV 408 (742)
T ss_pred hccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCccce
Confidence 9999999999999999999999999999999999999999988864 466667777888887776653
No 32
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=6.5e-37 Score=257.62 Aligned_cols=261 Identities=33% Similarity=0.593 Sum_probs=239.4
Q ss_pred cccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhc-cccHHHHHHHHHhCC
Q 023157 6 DYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQLLP 84 (286)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~ 84 (286)
++.|.+++.+.||+.-......++ +++|+|+||+++.+++....++.++++++|+|||+.+.+ ..|...+..+.+.+|
T Consensus 119 sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP 197 (980)
T KOG4284|consen 119 SFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLP 197 (980)
T ss_pred cccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcc
Confidence 356899999999998876666654 478999999999999999999999999999999999887 679999999999999
Q ss_pred cCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccch-------hhHHHHHHHHHhhccCcceEE
Q 023157 85 AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE-------EWKLETLCDLYETLAITQSVI 157 (286)
Q Consensus 85 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~iv 157 (286)
...|++++|||.+.++...+..++.+|..+....+....-++.++++..... ..|+..+.++++..+...+||
T Consensus 198 ~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlV 277 (980)
T KOG4284|consen 198 QIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALV 277 (980)
T ss_pred hhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHh
Confidence 9999999999999999999999999999999998888888899998876654 347888999999999999999
Q ss_pred EecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhh
Q 023157 158 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYL 237 (286)
Q Consensus 158 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~ 237 (286)
||+....|+-++..|+..|+.+..+.|.|++.+|..+++.++.-..+|||+|+.-++|||-+.++.||.+|+|.+..+|.
T Consensus 278 F~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~ 357 (980)
T KOG4284|consen 278 FCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYF 357 (980)
T ss_pred hhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCcceEEEEeccCcH-HHHHHH
Q 023157 238 HRIGRSGRFGRKGVAINFVTRDDE-RMLFDI 267 (286)
Q Consensus 238 Q~~GR~~R~~~~g~~~~~~~~~~~-~~~~~~ 267 (286)
||+||+||.|..|.+++|+..... ..+..+
T Consensus 358 HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 358 HRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred HHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 999999999999999999887755 443333
No 33
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.3e-36 Score=267.36 Aligned_cols=254 Identities=20% Similarity=0.292 Sum_probs=194.4
Q ss_pred cCceEEEEEcCcchHHHHHHH----hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccc--cHHHH---HH
Q 023157 8 LGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG--FKDQI---YD 78 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~----~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~---~~ 78 (286)
.|+.+..+.++...+.....+ .+..+++++||+++........+...++++|||||||++.+|+ |.+.+ ..
T Consensus 88 ~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~ 167 (607)
T PRK11057 88 NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQ 167 (607)
T ss_pred cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHH
Confidence 478888888887766544332 3468999999999874322222334568999999999999876 44444 34
Q ss_pred HHHhCCcCccEEEEEeecChhHHHHHHHhc--CCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceE
Q 023157 79 IFQLLPAKVQVGVFSATMPPEALEITRKFM--NKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 156 (286)
Q Consensus 79 i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 156 (286)
+...+ ++.+++++|||+++.....+...+ .++.. .... ...+++.... ... ..+...+..++....+.++|
T Consensus 168 l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~-~~~~--~~r~nl~~~v--~~~-~~~~~~l~~~l~~~~~~~~I 240 (607)
T PRK11057 168 LRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLI-QISS--FDRPNIRYTL--VEK-FKPLDQLMRYVQEQRGKSGI 240 (607)
T ss_pred HHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEE-EECC--CCCCcceeee--eec-cchHHHHHHHHHhcCCCCEE
Confidence 44445 467899999999987655444333 23322 2211 2223332222 122 22445566666666778999
Q ss_pred EEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchh
Q 023157 157 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY 236 (286)
Q Consensus 157 vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~ 236 (286)
|||+++++++.+++.|+..|+.+..+|+++++++|..+++.|..|+.+|||||+++++|+|+|++++||+++.|.|..+|
T Consensus 241 IFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y 320 (607)
T PRK11057 241 IYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY 320 (607)
T ss_pred EEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCcceEEEEeccCcHHHHHHHH
Q 023157 237 LHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 268 (286)
Q Consensus 237 ~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 268 (286)
+||+||+||.|.+|.+++++++.|...+..+.
T Consensus 321 ~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 321 YQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred HHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999998876665543
No 34
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.5e-36 Score=269.52 Aligned_cols=256 Identities=23% Similarity=0.294 Sum_probs=199.5
Q ss_pred cCceEEEEEcCcchHHHHHHH----hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccc--cHHHHHHH--
Q 023157 8 LGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG--FKDQIYDI-- 79 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~----~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~i-- 79 (286)
.|+.+..++|+.+..+....+ .+..+|+++||+++........+...++++|||||+|++..|+ |.+.+..+
T Consensus 76 ~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 76 AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 588999999988876554433 3578999999999975444444556678999999999998876 55554444
Q ss_pred -HHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEE
Q 023157 80 -FQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIF 158 (286)
Q Consensus 80 -~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf 158 (286)
...++ +.+++++|||+++.....+...+.-....... ....++++..... ....+...+..++....+.++|||
T Consensus 156 l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~nl~~~v~---~~~~~~~~l~~~l~~~~~~~~IIf 230 (591)
T TIGR01389 156 LAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI-TSFDRPNLRFSVV---KKNNKQKFLLDYLKKHRGQSGIIY 230 (591)
T ss_pred HHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCCCCCcEEEEE---eCCCHHHHHHHHHHhcCCCCEEEE
Confidence 44454 44599999999988777666555422111111 1223333332222 222355666677766667899999
Q ss_pred ecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhh
Q 023157 159 VNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 238 (286)
Q Consensus 159 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q 238 (286)
|++++.++.+++.|...|+.+..+|++|+.++|..+++.|.+|+.+|||||+++++|+|+|++++||++++|.|...|+|
T Consensus 231 ~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q 310 (591)
T TIGR01389 231 ASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQ 310 (591)
T ss_pred ECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCcceEEEEeccCcHHHHHHHH
Q 023157 239 RIGRSGRFGRKGVAINFVTRDDERMLFDIQ 268 (286)
Q Consensus 239 ~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 268 (286)
++||+||.|.+|.++++++..|......+.
T Consensus 311 ~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 311 EAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred hhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 999999999999999999888766655544
No 35
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=257.75 Aligned_cols=272 Identities=28% Similarity=0.408 Sum_probs=217.0
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCC---CCCCccEEEEehhhHhhccccHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL---RPDYIKMFVLDEADEMLSRGFKDQIYD 78 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~---~~~~~~~iIiDE~h~~~~~~~~~~~~~ 78 (286)
.++.+..|+++..++||.....+.+++...++|+|+||++|..++..+.. .+.++.++|+||++++...+....+..
T Consensus 284 ~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~ 363 (731)
T KOG0347|consen 284 KAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSK 363 (731)
T ss_pred HHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHH
Confidence 45677899999999999999999999999999999999999999986544 456689999999999999998888888
Q ss_pred HHHhCC-----cCccEEEEEeecChhH---------------------HHHHH--HhcCCCeEEEecCCccccccceeEE
Q 023157 79 IFQLLP-----AKVQVGVFSATMPPEA---------------------LEITR--KFMNKPVRILVKRDELTLEGIKQFY 130 (286)
Q Consensus 79 i~~~~~-----~~~~~i~~SAT~~~~~---------------------~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~ 130 (286)
++..+. ...|.+.+|||++-.. ..+.+ .+..+|..+...+.+.....+....
T Consensus 364 lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~ 443 (731)
T KOG0347|consen 364 LLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESL 443 (731)
T ss_pred HHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHh
Confidence 887764 3468999999986221 11111 1223344444444333333333332
Q ss_pred EEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec
Q 023157 131 VNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 210 (286)
Q Consensus 131 ~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 210 (286)
..|+..+ |--.+..++..++ +++|||||+++.+.+++-.|...++....+|+.|.+..|.+.+++|++....|||||+
T Consensus 444 I~C~~~e-KD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTD 521 (731)
T KOG0347|consen 444 IECPPLE-KDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATD 521 (731)
T ss_pred hcCCccc-cceeEEEEEeecC-CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeeh
Confidence 3332211 1111111122223 7999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhc
Q 023157 211 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVI 275 (286)
Q Consensus 211 ~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (286)
++++|+|||+++|||||-.|.+..-|+||.||++|.+..|..++++.+.+...+.++++-++...
T Consensus 522 VAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 522 VAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKE 586 (731)
T ss_pred hhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999998887643
No 36
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.2e-37 Score=261.55 Aligned_cols=262 Identities=23% Similarity=0.297 Sum_probs=207.0
Q ss_pred ccCceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccc--cHHHHHHH-
Q 023157 7 YLGVKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG--FKDQIYDI- 79 (286)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~i- 79 (286)
..|+++..+.+..+.++....+. +..+++..+||++..-...+.+....+.+++|||||++++|| |++.+..+
T Consensus 79 ~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg 158 (590)
T COG0514 79 AAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLG 158 (590)
T ss_pred HcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHH
Confidence 35789999999988777665443 368999999999976443333345557899999999999997 77766655
Q ss_pred --HHhCCcCccEEEEEeecChhHHHHHHHhcCCCe-EEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceE
Q 023157 80 --FQLLPAKVQVGVFSATMPPEALEITRKFMNKPV-RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 156 (286)
Q Consensus 80 --~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 156 (286)
...++ +++++++|||.++.+...+...+.-.. .+... +..++++............+...+.. .........|
T Consensus 159 ~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~--sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GI 234 (590)
T COG0514 159 RLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRG--SFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGI 234 (590)
T ss_pred HHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe--cCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeE
Confidence 44454 788999999999988887765554322 22222 23344444443333333334444443 2244556799
Q ss_pred EEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchh
Q 023157 157 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY 236 (286)
Q Consensus 157 vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~ 236 (286)
|||.|++.++.++++|...|+.+..+|++|+.++|..+.+.|..++.+|+|||.++++|||-|++++|||++.|.|.+.|
T Consensus 235 IYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsY 314 (590)
T COG0514 235 IYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESY 314 (590)
T ss_pred EEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhc
Q 023157 237 LHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 272 (286)
Q Consensus 237 ~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 272 (286)
+|-+||+||+|.++.+++++++.|......+.+...
T Consensus 315 yQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~ 350 (590)
T COG0514 315 YQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSK 350 (590)
T ss_pred HHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhc
Confidence 999999999999999999999999887777665543
No 37
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-37 Score=245.87 Aligned_cols=277 Identities=29% Similarity=0.485 Sum_probs=256.3
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
+++++.++.+.+.++|+.+.+++...+..++|||++||.++.++.....+.++.+.+||+||++.++..+|..++.+++.
T Consensus 111 kdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~ 190 (529)
T KOG0337|consen 111 KDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILS 190 (529)
T ss_pred HHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHH
Confidence 56888999999999999999999999999999999999999999888888999999999999999999999999999999
Q ss_pred hCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhc-cCcceEEEec
Q 023157 82 LLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL-AITQSVIFVN 160 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivf~~ 160 (286)
..+...|.++||||+|..+-...+..+.+|..+.+.-+....+..+..+..+...+ |...+..++... ...+++||++
T Consensus 191 rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~-K~aaLl~il~~~~~~~~t~vf~~ 269 (529)
T KOG0337|consen 191 RLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE-KEAALLSILGGRIKDKQTIVFVA 269 (529)
T ss_pred hCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH-HHHHHHHHHhccccccceeEEec
Confidence 99999999999999999999999999999998888777777777788888777766 777777777654 3468999999
Q ss_pred chhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhh
Q 023157 161 TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI 240 (286)
Q Consensus 161 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~ 240 (286)
+..+++++...++..|+.+..+++.+.+.-|......|+.++..++|.|+.+.+|+|+|-.+.||.++.|.+..-|.+|+
T Consensus 270 tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRV 349 (529)
T KOG0337|consen 270 TKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRV 349 (529)
T ss_pred ccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCC
Q 023157 241 GRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 279 (286)
Q Consensus 241 GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (286)
||+.|.|..|+.|.++..++..++..+..+++.++.-.+
T Consensus 350 gr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~ 388 (529)
T KOG0337|consen 350 GRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAI 388 (529)
T ss_pred cchhhccccceEEEEEecccchhhhhhhhhcCCceeecc
Confidence 999999999999999999999999999999988765444
No 38
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-36 Score=265.79 Aligned_cols=283 Identities=34% Similarity=0.559 Sum_probs=261.5
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCcc---EEEEehhhHhhccccHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIK---MFVLDEADEMLSRGFKDQIYD 78 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~---~iIiDE~h~~~~~~~~~~~~~ 78 (286)
++|.+.+|+++..++|+....++...+++++.|+||||+++.+++..+...+.++. ++|+||++.+++.+|.+++..
T Consensus 459 ~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 459 RKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITR 538 (997)
T ss_pred HHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccch
Confidence 46778899999999999999999999999999999999999999987666555554 999999999999999999999
Q ss_pred HHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhc-cCcceEE
Q 023157 79 IFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL-AITQSVI 157 (286)
Q Consensus 79 i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~iv 157 (286)
|+..+++..|.+++|||.+..++.+....+..|+.+.+.........+.+.+..+..+..|+..+.+++... ...++||
T Consensus 539 Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tii 618 (997)
T KOG0334|consen 539 ILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTII 618 (997)
T ss_pred HHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEE
Confidence 999999999999999999999999999999999999998888888899999999997777998888888744 5679999
Q ss_pred EecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhh
Q 023157 158 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYL 237 (286)
Q Consensus 158 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~ 237 (286)
||.+...|..+.+.|.+.|+.+..+||+.++.+|..+++.|+++..++||+|+.+++|+|++++..||+|++|.-..+|+
T Consensus 619 Fv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyv 698 (997)
T KOG0334|consen 619 FVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYV 698 (997)
T ss_pred EEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhc
Q 023157 238 HRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 284 (286)
Q Consensus 238 Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 284 (286)
+|+||+||.|..|.+++|+.+++......|++.+...-+-.|..|..
T Consensus 699 hR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~ 745 (997)
T KOG0334|consen 699 HRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQA 745 (997)
T ss_pred HHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHH
Confidence 99999999999999999999999999999999997777777766544
No 39
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-35 Score=244.85 Aligned_cols=262 Identities=27% Similarity=0.473 Sum_probs=218.3
Q ss_pred ceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhc-CCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCc---
Q 023157 10 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA--- 85 (286)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~--- 85 (286)
|-.+.+.||.+...++..+.++++|+|+||++|.+.+.+ ..+.++++..||+||++.+.+.||...+..|++.+.+
T Consensus 241 IVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~ 320 (708)
T KOG0348|consen 241 IVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQN 320 (708)
T ss_pred EeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccc
Confidence 456778888888888999999999999999999999988 5567888999999999999999999999988887732
Q ss_pred ----------CccEEEEEeecChhHHHHHHHhcCCCeEEEecCC-------------------------ccccccceeEE
Q 023157 86 ----------KVQVGVFSATMPPEALEITRKFMNKPVRILVKRD-------------------------ELTLEGIKQFY 130 (286)
Q Consensus 86 ----------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~i~~~~ 130 (286)
..|-+++|||+.+....+...-+.+|..+..... ...+.++.+.+
T Consensus 321 ~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry 400 (708)
T KOG0348|consen 321 AECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRY 400 (708)
T ss_pred hhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhce
Confidence 2578999999999888888888888876662110 12234556666
Q ss_pred EEccchhhHH---HHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC----------------------CCeeEEecCC
Q 023157 131 VNVEKEEWKL---ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR----------------------DHTVSATHGD 185 (286)
Q Consensus 131 ~~~~~~~~~~---~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~----------------------~~~~~~~~~~ 185 (286)
..++...+.. ..+.+..+.....++|||+.+.+.++.-+..|... +..+..+||+
T Consensus 401 ~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGs 480 (708)
T KOG0348|consen 401 TVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGS 480 (708)
T ss_pred EecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCc
Confidence 6677655322 33444445556679999999999999999888542 2458899999
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHH
Q 023157 186 MDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLF 265 (286)
Q Consensus 186 ~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~ 265 (286)
|++++|..++..|...+-.||+||+++++|+|+|.+++||.|++|.+..+|+||+||+.|.|.+|.+++|..+.+.++++
T Consensus 481 m~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 481 MEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred hhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHH
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999999777
Q ss_pred HHHHHh
Q 023157 266 DIQKFY 271 (286)
Q Consensus 266 ~~~~~~ 271 (286)
.+++.-
T Consensus 561 ~l~~~~ 566 (708)
T KOG0348|consen 561 YLKKHH 566 (708)
T ss_pred HHHhhc
Confidence 776543
No 40
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.1e-33 Score=265.09 Aligned_cols=267 Identities=19% Similarity=0.281 Sum_probs=189.9
Q ss_pred ccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcC-CCCCCCccEEEEehhhHhhcccc----HHHHHHHHH
Q 023157 7 YLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEADEMLSRGF----KDQIYDIFQ 81 (286)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~-~~~~~~~~~iIiDE~h~~~~~~~----~~~~~~i~~ 81 (286)
..++++..++|+++.+++.+.++++++|+|+||++|..++.+. ...++++++|||||+|.+.+..+ ...+.++..
T Consensus 75 ~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~ 154 (1490)
T PRK09751 75 EVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDA 154 (1490)
T ss_pred cCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHH
Confidence 3589999999999999888888888999999999999887643 34678899999999999986533 345666666
Q ss_pred hCCcCccEEEEEeecChhHHHHHHHhcCC-CeEEEecCCccccccceeEEEEccchh-------------------hHHH
Q 023157 82 LLPAKVQVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFYVNVEKEE-------------------WKLE 141 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------------~~~~ 141 (286)
..+.+.|+|++|||+.+. .+..+++... +..+.. ........+... ....... ....
T Consensus 155 l~~~~~QrIgLSATI~n~-eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~ 231 (1490)
T PRK09751 155 LLHTSAQRIGLSATVRSA-SDVAAFLGGDRPVTVVN-PPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWP 231 (1490)
T ss_pred hCCCCCeEEEEEeeCCCH-HHHHHHhcCCCCEEEEC-CCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhH
Confidence 677789999999999864 4444444332 444432 222222222211 1111100 0000
Q ss_pred H-HHHHHhh-ccCcceEEEecchhhHHHHHHHHhcCC---------------------------------CeeEEecCCC
Q 023157 142 T-LCDLYET-LAITQSVIFVNTRRKVDWLTDKMRSRD---------------------------------HTVSATHGDM 186 (286)
Q Consensus 142 ~-l~~~~~~-~~~~~~ivf~~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~~~~ 186 (286)
. ...++.. ....++||||||++.|+.++..|++.. ..+..+||++
T Consensus 232 ~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsL 311 (1490)
T PRK09751 232 YIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSV 311 (1490)
T ss_pred HHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccC
Confidence 1 1122221 245789999999999999999887531 1256899999
Q ss_pred CHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCC-CcceEEEEeccCcHHHH-
Q 023157 187 DQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG-RKGVAINFVTRDDERML- 264 (286)
Q Consensus 187 ~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~-~~g~~~~~~~~~~~~~~- 264 (286)
++++|..+++.|++|+.+++|||+.++.|||++++++||+++.|.|+.+|+||+||+||.. ..+.++++.... ....
T Consensus 312 SkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~r-~dlle 390 (1490)
T PRK09751 312 SKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTR-RDLVD 390 (1490)
T ss_pred CHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCcH-HHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999972 234444333322 2221
Q ss_pred --HHHHHHhchhccc
Q 023157 265 --FDIQKFYNVVIEE 277 (286)
Q Consensus 265 --~~~~~~~~~~~~~ 277 (286)
.-++..++..++.
T Consensus 391 ~~~~ve~~l~g~iE~ 405 (1490)
T PRK09751 391 SAVIVECMFAGRLEN 405 (1490)
T ss_pred hHHHHHHHhcCCCCc
Confidence 1245555555554
No 41
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=236.97 Aligned_cols=272 Identities=28% Similarity=0.461 Sum_probs=218.6
Q ss_pred CcccccccCceEEEEEcCcchHHHHHHHhC-CC----cEEEeCcHHHHHHHhc-CCCCCCCccEEEEehhhHhhccccHH
Q 023157 1 MRALGDYLGVKVHACVGGTSVREDQRILQA-GV----HVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLSRGFKD 74 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~----~iii~Tp~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~~~~~~ 74 (286)
|+++....|+.|+.+.|..+.+.+...+.+ .+ ||+|+||++|.+++.+ ..+.+.++.++||||++++.+..|..
T Consensus 235 f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~ 314 (620)
T KOG0350|consen 235 FKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQE 314 (620)
T ss_pred HHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHH
Confidence 356778889999999999998888877755 34 9999999999999985 67889999999999999998876665
Q ss_pred HHHHHHHhCC----------------------------------cCccEEEEEeecChhHHHHHHHhcCCCeEEEecC--
Q 023157 75 QIYDIFQLLP----------------------------------AKVQVGVFSATMPPEALEITRKFMNKPVRILVKR-- 118 (286)
Q Consensus 75 ~~~~i~~~~~----------------------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~-- 118 (286)
++-.++.... ++.+.+.+|||+......+...-++.|.......
T Consensus 315 Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~ 394 (620)
T KOG0350|consen 315 WLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPL 394 (620)
T ss_pred HHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeeccc
Confidence 5544443331 1123677778777665566555566663333332
Q ss_pred --CccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHh----cCCCeeEEecCCCCHHHHH
Q 023157 119 --DELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR----SRDHTVSATHGDMDQNTRD 192 (286)
Q Consensus 119 --~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~r~ 192 (286)
.-..+..+.+....++... +-..+..++......++|+|+++...+.+++..|+ +.+..+..+.|.++...|.
T Consensus 395 ~~ryslp~~l~~~~vv~~~~~-kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~ 473 (620)
T KOG0350|consen 395 IGRYSLPSSLSHRLVVTEPKF-KPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRY 473 (620)
T ss_pred ceeeecChhhhhceeeccccc-chHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHH
Confidence 2233455566655555543 66677788888888999999999999999998886 3355667788999999999
Q ss_pred HHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhc
Q 023157 193 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 272 (286)
Q Consensus 193 ~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 272 (286)
+.++.|+.|++++||||+++++|+|+.++++||.||+|.+..+|+||+||++|.|+.|.++.+.+..+...+.++-+..+
T Consensus 474 k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 474 KMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred HHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888876655
Q ss_pred h
Q 023157 273 V 273 (286)
Q Consensus 273 ~ 273 (286)
.
T Consensus 554 ~ 554 (620)
T KOG0350|consen 554 L 554 (620)
T ss_pred c
Confidence 4
No 42
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-33 Score=232.84 Aligned_cols=254 Identities=21% Similarity=0.293 Sum_probs=184.0
Q ss_pred cccccCc---eEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHH
Q 023157 4 LGDYLGV---KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF 80 (286)
Q Consensus 4 ~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~ 80 (286)
|.+.+|+ .++.++|....+++...|.+ .+|+|+||+.+.+.+..+.+++.++.++||||||+.....-+..+.+..
T Consensus 78 ~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y 156 (542)
T COG1111 78 CRKVTGIPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEY 156 (542)
T ss_pred HHHHhCCChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHH
Confidence 3445555 67799999999988888866 6899999999999999999999999999999999876654444554544
Q ss_pred HhCCcCccEEEEEeecChhHHHHHHHh---cCCCeEEEecCCc-c--ccccceeEEEE----------------------
Q 023157 81 QLLPAKVQVGVFSATMPPEALEITRKF---MNKPVRILVKRDE-L--TLEGIKQFYVN---------------------- 132 (286)
Q Consensus 81 ~~~~~~~~~i~~SAT~~~~~~~~~~~~---~~~~~~~~~~~~~-~--~~~~i~~~~~~---------------------- 132 (286)
....+++.++++||||..+.....+-. .-.-+.+....+. . ....+...+..
T Consensus 157 ~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~L 236 (542)
T COG1111 157 LRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRL 236 (542)
T ss_pred HHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHH
Confidence 445578899999999875544432111 0000000000000 0 00000000000
Q ss_pred ---------------------------------ccc--------------------------------------------
Q 023157 133 ---------------------------------VEK-------------------------------------------- 135 (286)
Q Consensus 133 ---------------------------------~~~-------------------------------------------- 135 (286)
.+.
T Consensus 237 k~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~ 316 (542)
T COG1111 237 KPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKG 316 (542)
T ss_pred HHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhccc
Confidence 000
Q ss_pred -----------------------------hhhHHHHHHHH----HhhccCcceEEEecchhhHHHHHHHHhcCCCeeE-E
Q 023157 136 -----------------------------EEWKLETLCDL----YETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVS-A 181 (286)
Q Consensus 136 -----------------------------~~~~~~~l~~~----~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~-~ 181 (286)
...|+..+..+ ++..++.++|||++.+++|+.+.+.|...+..+. .
T Consensus 317 ~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~r 396 (542)
T COG1111 317 GSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVR 396 (542)
T ss_pred chHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeE
Confidence 00022223333 3333556899999999999999999999877664 2
Q ss_pred ec--------CCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEE
Q 023157 182 TH--------GDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAI 253 (286)
Q Consensus 182 ~~--------~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~ 253 (286)
.. .||++.++.+++++|+.|+++|||||+++++|+|+|+++.||+|++..|+..++||.||+||. .+|+++
T Consensus 397 FiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~ 475 (542)
T COG1111 397 FIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVV 475 (542)
T ss_pred EeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEE
Confidence 22 479999999999999999999999999999999999999999999999999999999999997 889999
Q ss_pred EEeccC
Q 023157 254 NFVTRD 259 (286)
Q Consensus 254 ~~~~~~ 259 (286)
+++...
T Consensus 476 vLvt~g 481 (542)
T COG1111 476 VLVTEG 481 (542)
T ss_pred EEEecC
Confidence 999887
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.1e-33 Score=255.36 Aligned_cols=242 Identities=19% Similarity=0.261 Sum_probs=184.1
Q ss_pred ccccccCceEEEEEcCcchHHHHHHH----hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHH
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYD 78 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 78 (286)
++.+.+++++..++|+.+..+..+.+ .+.++|+|+||..+ ...+.+.+++++||||+|++ +.....
T Consensus 522 ~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf-----gv~~~~ 591 (926)
T TIGR00580 522 ERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF-----GVKQKE 591 (926)
T ss_pred HHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc-----chhHHH
Confidence 44556789999999988765554433 23689999999533 34567888999999999985 333344
Q ss_pred HHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEE
Q 023157 79 IFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIF 158 (286)
Q Consensus 79 i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf 158 (286)
.++..+.++++++|||||.+...........++..+..... ....+..++....... ....+...+ ..+++++||
T Consensus 592 ~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~--~R~~V~t~v~~~~~~~-i~~~i~~el--~~g~qv~if 666 (926)
T TIGR00580 592 KLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE--DRLPVRTFVMEYDPEL-VREAIRREL--LRGGQVFYV 666 (926)
T ss_pred HHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC--CccceEEEEEecCHHH-HHHHHHHHH--HcCCeEEEE
Confidence 55666678999999999988776665555455544443322 2233444444332211 122222222 246799999
Q ss_pred ecchhhHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCC-Ccch
Q 023157 159 VNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT-QPEN 235 (286)
Q Consensus 159 ~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~-s~~~ 235 (286)
|+++.+++.+++.|++. +..+..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||++++|. +..+
T Consensus 667 ~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~ 746 (926)
T TIGR00580 667 HNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQ 746 (926)
T ss_pred ECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHH
Confidence 99999999999999874 67899999999999999999999999999999999999999999999999999865 6779
Q ss_pred hhhhhcccccCCCcceEEEEeccC
Q 023157 236 YLHRIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 236 ~~Q~~GR~~R~~~~g~~~~~~~~~ 259 (286)
|.||+||+||.|..|.|++++...
T Consensus 747 l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 747 LYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred HHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999999999999998654
No 44
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5.5e-33 Score=255.76 Aligned_cols=246 Identities=23% Similarity=0.335 Sum_probs=177.0
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCC--CCCCccEEEEehhhHhhccccHHH----HHHHHHh
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL--RPDYIKMFVLDEADEMLSRGFKDQ----IYDIFQL 82 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~--~~~~~~~iIiDE~h~~~~~~~~~~----~~~i~~~ 82 (286)
++++..++|+.+..++.+.+..+++|+|+||+++..++.+... .+.++++||+||+|.+.+...+.. +.++...
T Consensus 124 ~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l 203 (876)
T PRK13767 124 EIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEEL 203 (876)
T ss_pred CeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHh
Confidence 7899999999998888888888899999999999877754332 467889999999999886654443 3444444
Q ss_pred CCcCccEEEEEeecChhHHHHHHHhcCC-----C--eEEEecCCccccccceeE-----EEEccch---hhHHHHHHHHH
Q 023157 83 LPAKVQVGVFSATMPPEALEITRKFMNK-----P--VRILVKRDELTLEGIKQF-----YVNVEKE---EWKLETLCDLY 147 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~i~~~-----~~~~~~~---~~~~~~l~~~~ 147 (286)
.+.+.|++++|||+++. .....+.... + ..+..... .....+... ....... ......+..++
T Consensus 204 ~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~iv~~~~-~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i 281 (876)
T PRK13767 204 AGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEIVDARF-VKPFDIKVISPVDDLIHTPAEEISEALYETLHELI 281 (876)
T ss_pred cCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEEEccCC-CccceEEEeccCccccccccchhHHHHHHHHHHHH
Confidence 44678999999999753 2333332221 1 11111110 000000000 0001111 11223333333
Q ss_pred hhccCcceEEEecchhhHHHHHHHHhcC------CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCC
Q 023157 148 ETLAITQSVIFVNTRRKVDWLTDKMRSR------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 221 (286)
Q Consensus 148 ~~~~~~~~ivf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~ 221 (286)
+ .+.++||||++++.|+.++..|++. +..+..+||++++++|..+++.|++|+.++||||+.+++|+|+|++
T Consensus 282 ~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~V 359 (876)
T PRK13767 282 K--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYI 359 (876)
T ss_pred h--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCC
Confidence 3 3568999999999999999999763 4679999999999999999999999999999999999999999999
Q ss_pred cEEEEccCCCCcchhhhhhcccccCC-CcceEEEEecc
Q 023157 222 SLVINYDLPTQPENYLHRIGRSGRFG-RKGVAINFVTR 258 (286)
Q Consensus 222 ~~vi~~~~~~s~~~~~Q~~GR~~R~~-~~g~~~~~~~~ 258 (286)
++||+++.|.+..+|+||+||+||.+ ..+.+.++...
T Consensus 360 d~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 360 DLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred cEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 99999999999999999999999973 33444444433
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.5e-32 Score=255.85 Aligned_cols=241 Identities=16% Similarity=0.206 Sum_probs=186.7
Q ss_pred cccccCceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHH
Q 023157 4 LGDYLGVKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDI 79 (286)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i 79 (286)
..+.+++++..++|+.+..++...+. +.++|+|+||+.+. ..+.+.+++++||||+|++.. .....
T Consensus 672 ~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG~-----~~~e~ 741 (1147)
T PRK10689 672 RFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFGV-----RHKER 741 (1147)
T ss_pred hhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcch-----hHHHH
Confidence 34456789999999988777665543 46899999996442 345677899999999999632 22344
Q ss_pred HHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEe
Q 023157 80 FQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFV 159 (286)
Q Consensus 80 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~ 159 (286)
++..+.+.|++++||||.+....+......++..+...... ...+.+..........+...+.++. .+++++|||
T Consensus 742 lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~ 816 (1147)
T PRK10689 742 IKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREIL---RGGQVYYLY 816 (1147)
T ss_pred HHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEE
Confidence 56667789999999999988877777777777665543322 2344554444333222222233332 457899999
Q ss_pred cchhhHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCC-CCcchh
Q 023157 160 NTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP-TQPENY 236 (286)
Q Consensus 160 ~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~-~s~~~~ 236 (286)
+++..++.+++.|++. +..+..+||+|++.+|.+++.+|++|+.+|||||+++++|+|+|++++||+.++. .+..+|
T Consensus 817 n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~ 896 (1147)
T PRK10689 817 NDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 (1147)
T ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHH
Confidence 9999999999999886 6789999999999999999999999999999999999999999999999976653 467789
Q ss_pred hhhhcccccCCCcceEEEEeccC
Q 023157 237 LHRIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 237 ~Q~~GR~~R~~~~g~~~~~~~~~ 259 (286)
.||+||+||.|+.|.|++++...
T Consensus 897 ~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 897 HQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred HHHhhccCCCCCceEEEEEeCCC
Confidence 99999999999999999998653
No 46
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.8e-32 Score=246.76 Aligned_cols=243 Identities=17% Similarity=0.235 Sum_probs=176.6
Q ss_pred cccccccCceEEEEEcCcchHHHHHHH----hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 77 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 77 (286)
+++.+.+|+++..++|+.+..+....+ .+.++|+|+||..+.+ .+.+.+++++|+||+|++... ..
T Consensus 331 ~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~-----qr 400 (681)
T PRK10917 331 KKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE-----QR 400 (681)
T ss_pred HHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH-----HH
Confidence 455666789999999999865544433 2369999999976643 345778899999999986432 22
Q ss_pred HHHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEE
Q 023157 78 DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 157 (286)
Q Consensus 78 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv 157 (286)
..+......+++++|||||.+....... .+......+.........+...+............+...+ ..+.+++|
T Consensus 401 ~~l~~~~~~~~iL~~SATp~prtl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~--~~g~q~~v 476 (681)
T PRK10917 401 LALREKGENPHVLVMTATPIPRTLAMTA--YGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEI--AKGRQAYV 476 (681)
T ss_pred HHHHhcCCCCCEEEEeCCCCHHHHHHHH--cCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHH--HcCCcEEE
Confidence 2333344568999999999877655443 2222222222111222334444443333332334443333 35679999
Q ss_pred Eecch--------hhHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEc
Q 023157 158 FVNTR--------RKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 227 (286)
Q Consensus 158 f~~~~--------~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~ 227 (286)
||+.. ..++.+++.|.+. +..+..+||+|++.+|..++++|++|+.+|||||+++++|+|+|++++||++
T Consensus 477 ~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~ 556 (681)
T PRK10917 477 VCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIE 556 (681)
T ss_pred EEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEe
Confidence 99954 3456677777765 4689999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CcchhhhhhcccccCCCcceEEEEecc
Q 023157 228 DLPT-QPENYLHRIGRSGRFGRKGVAINFVTR 258 (286)
Q Consensus 228 ~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 258 (286)
++|. +.+++.||.||+||.|..|.|++++..
T Consensus 557 ~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 557 NAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred CCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 9987 578899999999999999999999953
No 47
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=236.34 Aligned_cols=279 Identities=29% Similarity=0.415 Sum_probs=246.1
Q ss_pred cccCceEEEEEcCcchHHHHHH-HhCCCcEEEeCcHHHHHHHhcCC--CCCCCccEEEEehhhHhhcc-ccHHHHHHHHH
Q 023157 6 DYLGVKVHACVGGTSVREDQRI-LQAGVHVVVGTPGRVFDMLRRQS--LRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQ 81 (286)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~-~~~~~~iii~Tp~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~-~~~~~~~~i~~ 81 (286)
+..+.+++.+.......+...- ....++++++||-++...+.... +++..+..+|+||++.+.+. .|..++..+.+
T Consensus 236 ~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~s 315 (593)
T KOG0344|consen 236 EGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYS 315 (593)
T ss_pred CCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHH
Confidence 3444555555554333332222 22358999999999999888765 68888999999999999988 88888888888
Q ss_pred hCC-cCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEec
Q 023157 82 LLP-AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVN 160 (286)
Q Consensus 82 ~~~-~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~ 160 (286)
... +..++-++|||.+.+..+.++........+.+.........+.|-...+-.+.-|+..+.+++...-..+++||+.
T Consensus 316 ac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQ 395 (593)
T KOG0344|consen 316 ACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQ 395 (593)
T ss_pred HhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEe
Confidence 764 4677888999999999999999999999999998888888899999999999989999999999888889999999
Q ss_pred chhhHHHHHHHH-hcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhh
Q 023157 161 TRRKVDWLTDKM-RSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 239 (286)
Q Consensus 161 ~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~ 239 (286)
+.+.|..|+..| .-.++++..+||+.++.+|.+.+++|+.|++.|||||+.+++|+|+.++++||.+|.|.+..+|++|
T Consensus 396 s~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihr 475 (593)
T KOG0344|consen 396 SKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHR 475 (593)
T ss_pred cHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHH
Confidence 999999999999 6678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhc
Q 023157 240 IGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVAD 284 (286)
Q Consensus 240 ~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 284 (286)
+||+||.|+.|.+++||...+.+....+.+.+...--++|++.-.
T Consensus 476 IGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG~evpe~~m~ 520 (593)
T KOG0344|consen 476 IGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSGCEVPEKIMG 520 (593)
T ss_pred hhccCCCCCCcceEEEeccccchhhhhHHHHHHHcCCcchHHHHh
Confidence 999999999999999999999999999999999999999988643
No 48
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7.6e-33 Score=252.37 Aligned_cols=266 Identities=23% Similarity=0.302 Sum_probs=184.2
Q ss_pred cCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhC---C
Q 023157 8 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL---P 84 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~---~ 84 (286)
+|+++..++|+.....+ ....++|+|+||+++..++++....++++++||+||+|.+.+.+++..+..+++.+ .
T Consensus 93 ~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~ 169 (737)
T PRK02362 93 LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN 169 (737)
T ss_pred CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC
Confidence 48999999998765432 22458999999999999988766677889999999999988877777776655443 4
Q ss_pred cCccEEEEEeecChhHHHHHHHhcCCC-------eEEEe--c-CCccccccceeEEEEccchhhHHHHHHHHHhhccCcc
Q 023157 85 AKVQVGVFSATMPPEALEITRKFMNKP-------VRILV--K-RDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQ 154 (286)
Q Consensus 85 ~~~~~i~~SAT~~~~~~~~~~~~~~~~-------~~~~~--~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 154 (286)
.+.|++++|||+++. .++..+..... +.+.. . ........ .+..............+...+. .+++
T Consensus 170 ~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~ 245 (737)
T PRK02362 170 PDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVEVPSKDDTLNLVLDTLE--EGGQ 245 (737)
T ss_pred CCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCCCccchHHHHHHHHHHH--cCCC
Confidence 678999999999753 33333332111 10000 0 00000000 0000111111122333333332 5679
Q ss_pred eEEEecchhhHHHHHHHHhcCC------------------------------------CeeEEecCCCCHHHHHHHHHHh
Q 023157 155 SVIFVNTRRKVDWLTDKMRSRD------------------------------------HTVSATHGDMDQNTRDIIMREF 198 (286)
Q Consensus 155 ~ivf~~~~~~~~~l~~~l~~~~------------------------------------~~~~~~~~~~~~~~r~~~~~~f 198 (286)
+||||++++.|+.+++.|.... .++..+|+++++.+|..+++.|
T Consensus 246 ~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~F 325 (737)
T PRK02362 246 CLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAF 325 (737)
T ss_pred eEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHH
Confidence 9999999999999988775421 3689999999999999999999
Q ss_pred hcCCCcEEEEecCCccCCCCCCCcEEEE----cc-----CCCCcchhhhhhcccccCCCc--ceEEEEeccCcHHHHHHH
Q 023157 199 RSGSSRVLITTDLLARGIDVQQVSLVIN----YD-----LPTQPENYLHRIGRSGRFGRK--GVAINFVTRDDERMLFDI 267 (286)
Q Consensus 199 ~~~~~~vlv~T~~~~~Gidi~~~~~vi~----~~-----~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~~ 267 (286)
++|.++|||||+++++|+|+|..++||. ++ .|.+..+|.||+||+||.|.+ |.+++++...+. ....+
T Consensus 326 r~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~-~~~~~ 404 (737)
T PRK02362 326 RDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDE-LDELF 404 (737)
T ss_pred HcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchh-HHHHH
Confidence 9999999999999999999999998886 54 578899999999999998865 888888866432 22223
Q ss_pred HHHhchhcccCCcc
Q 023157 268 QKFYNVVIEELPSN 281 (286)
Q Consensus 268 ~~~~~~~~~~~~~~ 281 (286)
++++....+.+.+.
T Consensus 405 ~~~l~~~~~~i~S~ 418 (737)
T PRK02362 405 ERYIWADPEDVRSK 418 (737)
T ss_pred HHHHhCCCCceeec
Confidence 44444344333333
No 49
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.7e-32 Score=246.63 Aligned_cols=243 Identities=21% Similarity=0.269 Sum_probs=178.6
Q ss_pred ccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcC
Q 023157 7 YLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAK 86 (286)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~ 86 (286)
.+|+++..++|+.....+ +.+.++|+|+||+++..++++....++++++||+||+|.+.+.+++..+..+++.+..+
T Consensus 93 ~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~ 169 (720)
T PRK00254 93 KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGR 169 (720)
T ss_pred hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcC
Confidence 368999999998875432 23568999999999999888776678899999999999998888889999999988888
Q ss_pred ccEEEEEeecChhHHHHHHHhcCCCeEEEecCCcccccccee-----EEEEccch------hhHHHHHHHHHhhccCcce
Q 023157 87 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQ-----FYVNVEKE------EWKLETLCDLYETLAITQS 155 (286)
Q Consensus 87 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~------~~~~~~l~~~~~~~~~~~~ 155 (286)
+|++++|||+++. ..+..+ ++..... .. ..+..+.. ........ ......+...++ .++++
T Consensus 170 ~qiI~lSATl~n~-~~la~w-l~~~~~~---~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~v 241 (720)
T PRK00254 170 AQILGLSATVGNA-EELAEW-LNAELVV---SD-WRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGA 241 (720)
T ss_pred CcEEEEEccCCCH-HHHHHH-hCCcccc---CC-CCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCE
Confidence 9999999999753 444443 3322111 11 11111110 11111111 111122333333 45799
Q ss_pred EEEecchhhHHHHHHHHhcC---------------------------------CCeeEEecCCCCHHHHHHHHHHhhcCC
Q 023157 156 VIFVNTRRKVDWLTDKMRSR---------------------------------DHTVSATHGDMDQNTRDIIMREFRSGS 202 (286)
Q Consensus 156 ivf~~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~ 202 (286)
||||++++.|+.++..+... ..++..+|+++++++|..+.+.|++|.
T Consensus 242 LVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~ 321 (720)
T PRK00254 242 LVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGL 321 (720)
T ss_pred EEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCC
Confidence 99999999998887666321 235899999999999999999999999
Q ss_pred CcEEEEecCCccCCCCCCCcEEEE-------ccCCC-CcchhhhhhcccccCC--CcceEEEEeccCc
Q 023157 203 SRVLITTDLLARGIDVQQVSLVIN-------YDLPT-QPENYLHRIGRSGRFG--RKGVAINFVTRDD 260 (286)
Q Consensus 203 ~~vlv~T~~~~~Gidi~~~~~vi~-------~~~~~-s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~ 260 (286)
.+|||||+++++|+|+|..++||. ++.|. +..+|.||+||+||.| ..|.+++++...+
T Consensus 322 i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 322 IKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred CeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 999999999999999999998884 34333 5679999999999975 4588998887654
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.1e-31 Score=238.42 Aligned_cols=242 Identities=19% Similarity=0.252 Sum_probs=171.7
Q ss_pred cccccccCceEEEEEcCcchHHHHHHH----hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 77 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 77 (286)
+++.+.+|+++..++|+.+..+....+ .++++|+|+||..+.+ .+.+.++++||+||+|.+.... ..
T Consensus 305 ~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~q----r~ 375 (630)
T TIGR00643 305 RNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQ----RK 375 (630)
T ss_pred HHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHH----HH
Confidence 345566789999999998876544333 3468999999987653 3557789999999999864322 22
Q ss_pred HHHHhCC--cCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhh-ccCcc
Q 023157 78 DIFQLLP--AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET-LAITQ 154 (286)
Q Consensus 78 ~i~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 154 (286)
.+..... ..+++++|||||.+....... .+................+......... +...+..+.+. ..+.+
T Consensus 376 ~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p~~r~~i~~~~~~~~~---~~~~~~~i~~~l~~g~q 450 (630)
T TIGR00643 376 KLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELPPGRKPITTVLIKHDE---KDIVYEFIEEEIAKGRQ 450 (630)
T ss_pred HHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCCCCCCceEEEEeCcch---HHHHHHHHHHHHHhCCc
Confidence 2333332 268899999999876554432 1221111111111112233333332222 22222222222 24678
Q ss_pred eEEEecch--------hhHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEE
Q 023157 155 SVIFVNTR--------RKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 224 (286)
Q Consensus 155 ~ivf~~~~--------~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~v 224 (286)
++|||+.. ..++.+++.|.+. +..+..+||+|++++|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 451 ~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~V 530 (630)
T TIGR00643 451 AYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVM 530 (630)
T ss_pred EEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEE
Confidence 99999875 4566777777653 6789999999999999999999999999999999999999999999999
Q ss_pred EEccCCC-CcchhhhhhcccccCCCcceEEEEec
Q 023157 225 INYDLPT-QPENYLHRIGRSGRFGRKGVAINFVT 257 (286)
Q Consensus 225 i~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~ 257 (286)
|++++|. +.+++.||.||+||.|..|.|++++.
T Consensus 531 Ii~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 531 VIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred EEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999986 67889999999999999999999993
No 51
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1e-30 Score=233.11 Aligned_cols=235 Identities=21% Similarity=0.232 Sum_probs=178.9
Q ss_pred ccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhc---------CCC---CCCCccEEEEehhhHhhcccc
Q 023157 5 GDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR---------QSL---RPDYIKMFVLDEADEMLSRGF 72 (286)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~---------~~~---~~~~~~~iIiDE~h~~~~~~~ 72 (286)
.+..++++..++||.+.+.++..++.+++|+|+|++++.+-... .++ .+.+++++|+|||| ...+|
T Consensus 109 ~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF 186 (844)
T TIGR02621 109 KKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAF 186 (844)
T ss_pred cccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceEEEEehhh--hcccc
Confidence 34456899999999999999999999999999997555332110 001 26778999999999 56789
Q ss_pred HHHHHHHHHhC--Cc---CccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHH----H
Q 023157 73 KDQIYDIFQLL--PA---KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLET----L 143 (286)
Q Consensus 73 ~~~~~~i~~~~--~~---~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----l 143 (286)
...+..|++.. ++ +.|+++||||++.+.....+.+..++..+...........+.++ ...+... +... +
T Consensus 187 ~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q~-v~v~~e~-Kl~~lv~~L 264 (844)
T TIGR02621 187 QELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVKL-VPPSDEK-FLSTMVKEL 264 (844)
T ss_pred HHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccceEEE-EecChHH-HHHHHHHHH
Confidence 99999999864 33 26899999999987777766676666655555444444455553 3333322 3322 2
Q ss_pred HHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHH-----HHHHHhhc----CC-------CcEEE
Q 023157 144 CDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRD-----IIMREFRS----GS-------SRVLI 207 (286)
Q Consensus 144 ~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----~~-------~~vlv 207 (286)
..++ ...++++|||||+++.|+.+++.|++.++ ..+||+|++.+|. .+++.|++ |+ ..|||
T Consensus 265 ~~ll-~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILV 341 (844)
T TIGR02621 265 NLLM-KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLV 341 (844)
T ss_pred HHHH-hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEe
Confidence 2222 23557899999999999999999998776 8999999999999 78899986 44 68999
Q ss_pred EecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCc
Q 023157 208 TTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK 249 (286)
Q Consensus 208 ~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~ 249 (286)
||+++++|+|++. ++||....| ...|+||+||+||.|..
T Consensus 342 ATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 342 CTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGEL 380 (844)
T ss_pred ccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCC
Confidence 9999999999986 888876666 68999999999999875
No 52
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=237.59 Aligned_cols=251 Identities=21% Similarity=0.268 Sum_probs=193.5
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCC--CCCCCccEEEEehhhHhhccccH----HHH
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS--LRPDYIKMFVLDEADEMLSRGFK----DQI 76 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~----~~~ 76 (286)
..++.+|+.+..-||+++..+..++.++.+||+|+||++|.-++.... -.+.++.+||+||.|.+.....+ -.+
T Consensus 95 ~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~L 174 (814)
T COG1201 95 EPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSL 174 (814)
T ss_pred HHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhH
Confidence 345678999999999999999999999999999999999987776532 25788999999999998866544 344
Q ss_pred HHHHHhCCcCccEEEEEeecChhHHHHHHHhcCCC--eEEEecCCccccccceeEEEEcc------chhhHHHHHHHHHh
Q 023157 77 YDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKP--VRILVKRDELTLEGIKQFYVNVE------KEEWKLETLCDLYE 148 (286)
Q Consensus 77 ~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~l~~~~~ 148 (286)
.++....+ ++|.|++|||..+. ....+...+.. ..+....... ...+.-...... ........+.++++
T Consensus 175 eRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~~k-~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~ 251 (814)
T COG1201 175 ERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSAAK-KLEIKVISPVEDLIYDEELWAALYERIAELVK 251 (814)
T ss_pred HHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEcccCC-cceEEEEecCCccccccchhHHHHHHHHHHHh
Confidence 45555555 89999999999754 44455555443 3333322221 111211111111 11224555666666
Q ss_pred hccCcceEEEecchhhHHHHHHHHhcCC-CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEc
Q 023157 149 TLAITQSVIFVNTRRKVDWLTDKMRSRD-HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 227 (286)
Q Consensus 149 ~~~~~~~ivf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~ 227 (286)
... .++||+||+..||.++..|++.+ ..+..+||.++.+.|..+.++|++|+.+++|||+.++-|||+.+++.||++
T Consensus 252 ~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~ 329 (814)
T COG1201 252 KHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQL 329 (814)
T ss_pred hcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEe
Confidence 544 89999999999999999999886 789999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhhhcccccCCC-cceEEEEecc
Q 023157 228 DLPTQPENYLHRIGRSGRFGR-KGVAINFVTR 258 (286)
Q Consensus 228 ~~~~s~~~~~Q~~GR~~R~~~-~g~~~~~~~~ 258 (286)
+.|.++..++||+||+|+... ..+++++...
T Consensus 330 ~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 330 GSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999998743 3666666655
No 53
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.98 E-value=2.1e-30 Score=234.61 Aligned_cols=243 Identities=16% Similarity=0.272 Sum_probs=180.5
Q ss_pred ccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhH-hhccccHH-HHHHHHHh
Q 023157 5 GDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE-MLSRGFKD-QIYDIFQL 82 (286)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~~~-~~~~i~~~ 82 (286)
++..|..|.+..++.+ ......+|+|+||+.|.+.+.+. ..++++++|||||+|. ..+.++.- .+..+...
T Consensus 70 ~~~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~ 142 (819)
T TIGR01970 70 GEAVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSS 142 (819)
T ss_pred CCCcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHh
Confidence 3444555555554422 22345789999999999988764 4688899999999995 44544432 33455566
Q ss_pred CCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhH----HHHHHHHHhhccCcceEEE
Q 023157 83 LPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWK----LETLCDLYETLAITQSVIF 158 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~ivf 158 (286)
++++.|+++||||++... ...++.+...+...... ..+.+++......... ...+..+++. ..+++|||
T Consensus 143 lr~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVF 215 (819)
T TIGR01970 143 LREDLKILAMSATLDGER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVF 215 (819)
T ss_pred cCCCceEEEEeCCCCHHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEE
Confidence 677899999999998653 34555554444433322 1245555544333221 2234444443 35789999
Q ss_pred ecchhhHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCC----
Q 023157 159 VNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT---- 231 (286)
Q Consensus 159 ~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~---- 231 (286)
+++..+++.+++.|++ .++.+..+||+++.++|..+++.|.+|+.+|+|||+++++|+|+|++++||++|.|.
T Consensus 216 lpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~y 295 (819)
T TIGR01970 216 LPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARF 295 (819)
T ss_pred ECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccc
Confidence 9999999999999987 378899999999999999999999999999999999999999999999999999874
Q ss_pred --------------CcchhhhhhcccccCCCcceEEEEeccCcHH
Q 023157 232 --------------QPENYLHRIGRSGRFGRKGVAINFVTRDDER 262 (286)
Q Consensus 232 --------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 262 (286)
|..++.||.||+||. .+|.||.+++..+..
T Consensus 296 d~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 296 DPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQ 339 (819)
T ss_pred ccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHH
Confidence 234689999999998 789999999886543
No 54
>PRK01172 ski2-like helicase; Provisional
Probab=99.97 E-value=1.7e-30 Score=235.49 Aligned_cols=254 Identities=19% Similarity=0.268 Sum_probs=174.5
Q ss_pred ccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHH---hC
Q 023157 7 YLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ---LL 83 (286)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~---~~ 83 (286)
..|.++...+|+...... ..+.++|+|+||+++..++.+....++++++||+||+|.+.+.+++..+..++. ..
T Consensus 90 ~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~ 166 (674)
T PRK01172 90 SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV 166 (674)
T ss_pred hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhc
Confidence 358899999998764332 124679999999999998887776788899999999999887777766666544 34
Q ss_pred CcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEE-----EccchhhHHHHHHHHHhh--ccCcceE
Q 023157 84 PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYV-----NVEKEEWKLETLCDLYET--LAITQSV 156 (286)
Q Consensus 84 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~l~~~~~~--~~~~~~i 156 (286)
..+.|++++|||+++. .++..+ ++... + ... ..+..+..... ..+........+..++.. ..++++|
T Consensus 167 ~~~~riI~lSATl~n~-~~la~w-l~~~~-~--~~~-~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vL 240 (674)
T PRK01172 167 NPDARILALSATVSNA-NELAQW-LNASL-I--KSN-FRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVL 240 (674)
T ss_pred CcCCcEEEEeCccCCH-HHHHHH-hCCCc-c--CCC-CCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEE
Confidence 5678999999999643 344443 33221 0 000 11111111110 011111011112222222 2467999
Q ss_pred EEecchhhHHHHHHHHhcC-------------------------CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC
Q 023157 157 IFVNTRRKVDWLTDKMRSR-------------------------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 211 (286)
Q Consensus 157 vf~~~~~~~~~l~~~l~~~-------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 211 (286)
|||++++.++.+++.|... ..++..+|++++.++|..+.+.|++|..+|||||++
T Consensus 241 VF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~ 320 (674)
T PRK01172 241 VFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPT 320 (674)
T ss_pred EEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecch
Confidence 9999999999999888643 125889999999999999999999999999999999
Q ss_pred CccCCCCCCCcEEEEccC---------CCCcchhhhhhcccccCCC--cceEEEEeccCcHHHHHHHHHHhc
Q 023157 212 LARGIDVQQVSLVINYDL---------PTQPENYLHRIGRSGRFGR--KGVAINFVTRDDERMLFDIQKFYN 272 (286)
Q Consensus 212 ~~~Gidi~~~~~vi~~~~---------~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~~~~~~~~~~~~~ 272 (286)
+++|+|+|.. .||+.+. |.+..+|.||+||+||.|. .|.+++++...+ .+..+.+++.
T Consensus 321 la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~--~~~~~~~~l~ 389 (674)
T PRK01172 321 LAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA--SYDAAKKYLS 389 (674)
T ss_pred hhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc--cHHHHHHHHc
Confidence 9999999985 5555543 4577899999999999885 466777765543 1233445553
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.97 E-value=6.1e-30 Score=226.53 Aligned_cols=241 Identities=19% Similarity=0.208 Sum_probs=175.1
Q ss_pred cCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCC-cC
Q 023157 8 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AK 86 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~-~~ 86 (286)
.|.++...+|+.+. .......+..+|+++|+... ...+.++++||+||+|++...+ ..+..++.... ..
T Consensus 252 ~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~llk~~~~~~ 321 (675)
T PHA02653 252 DGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVARKHIDKI 321 (675)
T ss_pred CCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHHHHHHhhhhc
Confidence 46678889999773 22233334679999997521 1246778999999999976654 44555554433 33
Q ss_pred ccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccc---------hhhHHHHHHHHHhh--ccCcce
Q 023157 87 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK---------EEWKLETLCDLYET--LAITQS 155 (286)
Q Consensus 87 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~l~~~~~~--~~~~~~ 155 (286)
.|+++||||++++...+ ..++.++..+..... ....+.+.+..... ...+...+..+... ..++++
T Consensus 322 rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~i 398 (675)
T PHA02653 322 RSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSG 398 (675)
T ss_pred CEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcE
Confidence 58999999998776655 567777777766432 22445555543221 11122222222222 234689
Q ss_pred EEEecchhhHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHh-hcCCCcEEEEecCCccCCCCCCCcEEEEcc---C
Q 023157 156 VIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREF-RSGSSRVLITTDLLARGIDVQQVSLVINYD---L 229 (286)
Q Consensus 156 ivf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~---~ 229 (286)
|||+++..+++.+++.|++. ++.+..+||++++. .+.++.| ++|+.+|||||+++++|+|+|++++||.+| .
T Consensus 399 LVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~ 476 (675)
T PHA02653 399 IVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYV 476 (675)
T ss_pred EEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccC
Confidence 99999999999999999877 68999999999975 4666777 689999999999999999999999999998 4
Q ss_pred CC---------CcchhhhhhcccccCCCcceEEEEeccCcHHHH
Q 023157 230 PT---------QPENYLHRIGRSGRFGRKGVAINFVTRDDERML 264 (286)
Q Consensus 230 ~~---------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 264 (286)
|. |.++|.||.||+||. .+|.|+.++++.+...+
T Consensus 477 p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI 519 (675)
T PHA02653 477 PEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPI 519 (675)
T ss_pred CCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHH
Confidence 54 788999999999998 78999999998765433
No 56
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.97 E-value=3.7e-30 Score=233.37 Aligned_cols=244 Identities=16% Similarity=0.287 Sum_probs=181.6
Q ss_pred cccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHh-hcccc-HHHHHHHHH
Q 023157 4 LGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM-LSRGF-KDQIYDIFQ 81 (286)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~~-~~~~~~i~~ 81 (286)
+++..|..+....++.+. ......|+|+||+.+.+.+..+ ..++++++||+||+|.. .+..+ ...+..+.+
T Consensus 72 l~~~~g~~VGy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~ 144 (812)
T PRK11664 72 LGEKPGETVGYRMRAESK------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQ 144 (812)
T ss_pred hCcccCceEEEEecCccc------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHH
Confidence 344556677766665432 1234689999999999988764 46889999999999973 22222 233445566
Q ss_pred hCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHH----HHHHHHHhhccCcceEE
Q 023157 82 LLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL----ETLCDLYETLAITQSVI 157 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~iv 157 (286)
.++++.|+++||||++... ...++.+...+...... ..+.+++...+...... ..+..++.. ..+.+||
T Consensus 145 ~lr~~lqlilmSATl~~~~---l~~~~~~~~~I~~~gr~---~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLV 217 (812)
T PRK11664 145 GLRDDLKLLIMSATLDNDR---LQQLLPDAPVIVSEGRS---FPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLL 217 (812)
T ss_pred hCCccceEEEEecCCCHHH---HHHhcCCCCEEEecCcc---ccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEE
Confidence 6677899999999998652 24555554444433221 23555555444333221 234444433 3578999
Q ss_pred EecchhhHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCC---
Q 023157 158 FVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT--- 231 (286)
Q Consensus 158 f~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~--- 231 (286)
|+++..+++.+++.|++ .++.+..+||+++.++|..++..|.+|+.+|+|||+++++|+|+|++++||.+|.+.
T Consensus 218 Flpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~ 297 (812)
T PRK11664 218 FLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVAR 297 (812)
T ss_pred EcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCccccc
Confidence 99999999999999986 477899999999999999999999999999999999999999999999999988764
Q ss_pred ---------------CcchhhhhhcccccCCCcceEEEEeccCcHH
Q 023157 232 ---------------QPENYLHRIGRSGRFGRKGVAINFVTRDDER 262 (286)
Q Consensus 232 ---------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 262 (286)
|..++.||.||+||. .+|.||.++++.+..
T Consensus 298 yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 298 FDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred ccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 345899999999998 789999999987543
No 57
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=3.7e-30 Score=217.65 Aligned_cols=226 Identities=16% Similarity=0.213 Sum_probs=154.4
Q ss_pred CCcEEEeCcHHHHHHHhcCC----CCCC--CccEEEEehhhHhhccccHHHHHHHHHhC-CcCccEEEEEeecChhHHHH
Q 023157 31 GVHVVVGTPGRVFDMLRRQS----LRPD--YIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSATMPPEALEI 103 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~----~~~~--~~~~iIiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~ 103 (286)
..+|+++||+++.+.+.... ..+. ..++||+||+|.+...++.. +..++..+ ..+.|++++|||+++...+.
T Consensus 94 ~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i~~SATlp~~l~~~ 172 (358)
T TIGR01587 94 LDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPILLMSATLPKFLKEY 172 (358)
T ss_pred hCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEEEEecCchHHHHHH
Confidence 36799999999988766521 1111 13789999999987764333 44444433 24689999999998665555
Q ss_pred HHHhcCCCeEEEecCCccccccceeEEEE-ccchhhHHHHHHHHHhhc-cCcceEEEecchhhHHHHHHHHhcCCC--ee
Q 023157 104 TRKFMNKPVRILVKRDELTLEGIKQFYVN-VEKEEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDH--TV 179 (286)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~ivf~~~~~~~~~l~~~l~~~~~--~~ 179 (286)
.......+.......... .....+.+.. ......+...+..+++.. .+.++||||+++++++.+++.|++.+. .+
T Consensus 173 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~ 251 (358)
T TIGR01587 173 AEKIGYVEFNEPLDLKEE-RRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEI 251 (358)
T ss_pred HhcCCCcccccCCCCccc-cccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeE
Confidence 444322211100000000 0001122211 222222444555555432 467999999999999999999988765 59
Q ss_pred EEecCCCCHHHHHH----HHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCc----ce
Q 023157 180 SATHGDMDQNTRDI----IMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK----GV 251 (286)
Q Consensus 180 ~~~~~~~~~~~r~~----~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~----g~ 251 (286)
..+||++++.+|.+ +++.|++|+..+||||+++++|+|++ ++.+|.+..| ..+|+||+||+||.|++ |.
T Consensus 252 ~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~ 328 (358)
T TIGR01587 252 MLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFE 328 (358)
T ss_pred EEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCe
Confidence 99999999999976 48899999999999999999999995 7888877666 78999999999998753 47
Q ss_pred EEEEeccCcH
Q 023157 252 AINFVTRDDE 261 (286)
Q Consensus 252 ~~~~~~~~~~ 261 (286)
++++....+.
T Consensus 329 ~~v~~~~~~~ 338 (358)
T TIGR01587 329 VYIITIAPEG 338 (358)
T ss_pred EEEEeecCCC
Confidence 7888776543
No 58
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=8.9e-29 Score=212.15 Aligned_cols=253 Identities=18% Similarity=0.229 Sum_probs=194.9
Q ss_pred cccccccCceEEEEEcCcchHHHHHHH----hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 77 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 77 (286)
.++.+.+|++|..++|+.......+.+ .+..+|+|+| +.+....+.++++.++|+||-|++ +-.-.
T Consensus 332 ~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQHRF-----GV~QR 401 (677)
T COG1200 332 RKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQHRF-----GVHQR 401 (677)
T ss_pred HHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEeccccc-----cHHHH
Confidence 456778899999999998876666544 3479999999 666667788999999999999994 54444
Q ss_pred HHHHhCCc-CccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceE
Q 023157 78 DIFQLLPA-KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 156 (286)
Q Consensus 78 ~i~~~~~~-~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 156 (286)
..+..... .++++.|||||-|.+..+.. +++...-.+..-...+..+...+...+.....++.+..-+. .+.++-
T Consensus 402 ~~L~~KG~~~Ph~LvMTATPIPRTLAlt~--fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~--~GrQaY 477 (677)
T COG1200 402 LALREKGEQNPHVLVMTATPIPRTLALTA--FGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIA--KGRQAY 477 (677)
T ss_pred HHHHHhCCCCCcEEEEeCCCchHHHHHHH--hccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHH--cCCEEE
Confidence 44445445 78999999999998766543 33333333333334455677777766655545555555444 567888
Q ss_pred EEecchh--------hHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEE
Q 023157 157 IFVNTRR--------KVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 226 (286)
Q Consensus 157 vf~~~~~--------~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~ 226 (286)
+.|+-++ .|+.+++.|+.. +..+..+||.|+.+++.++++.|++|+.+|||||.+++.|||+|+++++|+
T Consensus 478 ~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI 557 (677)
T COG1200 478 VVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI 557 (677)
T ss_pred EEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE
Confidence 9998755 455667777753 567999999999999999999999999999999999999999999999999
Q ss_pred ccCC-CCcchhhhhhcccccCCCcceEEEEeccCc-HHHHHHHH
Q 023157 227 YDLP-TQPENYLHRIGRSGRFGRKGVAINFVTRDD-ERMLFDIQ 268 (286)
Q Consensus 227 ~~~~-~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~-~~~~~~~~ 268 (286)
.++- ...+++-|..||+||.+..+.|++++.+.. .....+++
T Consensus 558 e~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~ 601 (677)
T COG1200 558 ENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLK 601 (677)
T ss_pred echhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHH
Confidence 9885 468899999999999989999999999887 44344443
No 59
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=7.3e-29 Score=224.33 Aligned_cols=262 Identities=19% Similarity=0.232 Sum_probs=205.1
Q ss_pred cccCceEEEEEcCcchHHHHHHHh----C--CCcEEEeCcHHHHHHHhc--CCCCCCC---ccEEEEehhhHhhccc--c
Q 023157 6 DYLGVKVHACVGGTSVREDQRILQ----A--GVHVVVGTPGRVFDMLRR--QSLRPDY---IKMFVLDEADEMLSRG--F 72 (286)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~----~--~~~iii~Tp~~l~~~~~~--~~~~~~~---~~~iIiDE~h~~~~~~--~ 72 (286)
...+++...+.++....++...+. + .++|+..|||++...-.. ....+.. +.++||||||+..+|+ |
T Consensus 325 ~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdF 404 (941)
T KOG0351|consen 325 SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDF 404 (941)
T ss_pred hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccc
Confidence 346888899999888765554442 3 689999999998653211 1112222 7899999999999986 6
Q ss_pred HHHHHHH---HHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhh
Q 023157 73 KDQIYDI---FQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET 149 (286)
Q Consensus 73 ~~~~~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~ 149 (286)
++.+.++ +..++ ...++++|||.++.+.+.+-..++-.... +...+.+++++......-.........+...-..
T Consensus 405 Rp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~-~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~ 482 (941)
T KOG0351|consen 405 RPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPE-LFKSSFNRPNLKYEVSPKTDKDALLDILEESKLR 482 (941)
T ss_pred cHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcc-eecccCCCCCceEEEEeccCccchHHHHHHhhhc
Confidence 6666554 34444 46899999999988877766655533322 3344455665555544333223234444444556
Q ss_pred ccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccC
Q 023157 150 LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 229 (286)
Q Consensus 150 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~ 229 (286)
.+....||||.++.+++.++..|++.++++..+|++|++.+|..+.+.|..++++|++||=++++|+|-|+|+.|||++.
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~l 562 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSL 562 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHH
Q 023157 230 PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 269 (286)
Q Consensus 230 ~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~ 269 (286)
|.|.+.|+|-.||+||.|....|++|+...|...+..+..
T Consensus 563 Pks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 563 PKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred chhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 9999999999999999999999999999998777766643
No 60
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=5.1e-29 Score=217.82 Aligned_cols=226 Identities=14% Similarity=0.141 Sum_probs=155.7
Q ss_pred ceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccE
Q 023157 10 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 89 (286)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 89 (286)
..+..+.||.... .+.+|+|+||+++.+... ..++++++||+||||++.... +..++..+++..++
T Consensus 187 ~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~----~~~il~~~~~~~~~ 252 (501)
T PHA02558 187 EAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKS----LTSIITKLDNCKFK 252 (501)
T ss_pred cceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchh----HHHHHHhhhccceE
Confidence 3444555554322 347899999999876432 245778999999999986543 45566666666789
Q ss_pred EEEEeecChhHHHH--HHHhcCCCeEEEecCCc------------------cccc---cc-----eeEEEEccchhhHHH
Q 023157 90 GVFSATMPPEALEI--TRKFMNKPVRILVKRDE------------------LTLE---GI-----KQFYVNVEKEEWKLE 141 (286)
Q Consensus 90 i~~SAT~~~~~~~~--~~~~~~~~~~~~~~~~~------------------~~~~---~i-----~~~~~~~~~~~~~~~ 141 (286)
+++||||.+..... ....++. ........+ .... .+ ...+........+..
T Consensus 253 lGLTATp~~~~~~~~~~~~~fG~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~ 331 (501)
T PHA02558 253 FGLTGSLRDGKANILQYVGLFGD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNK 331 (501)
T ss_pred EEEeccCCCccccHHHHHHhhCC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHH
Confidence 99999997532211 1112221 111110000 0000 00 000000001111223
Q ss_pred HHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEe-cCCccCCCC
Q 023157 142 TLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT-DLLARGIDV 218 (286)
Q Consensus 142 ~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-~~~~~Gidi 218 (286)
.+..+.... .+.+++||+.+.++++.+++.|+..+.++..+||+++.++|..+++.|+.|+..||||| +.+++|+|+
T Consensus 332 ~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Di 411 (501)
T PHA02558 332 WIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISI 411 (501)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceecccccc
Confidence 333333322 45689999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred CCCcEEEEccCCCCcchhhhhhcccccCCCcc
Q 023157 219 QQVSLVINYDLPTQPENYLHRIGRSGRFGRKG 250 (286)
Q Consensus 219 ~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g 250 (286)
|++++||+..++.|...|+||+||++|.+.++
T Consensus 412 p~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 412 KNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred ccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 99999999999999999999999999986543
No 61
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=7e-30 Score=193.20 Aligned_cols=237 Identities=42% Similarity=0.799 Sum_probs=207.2
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhcc-ccHHHHHHHHHhCCcCc
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQLLPAKV 87 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~i~~~~~~~~ 87 (286)
+.+++.++||..+....+.+++.++|+|+||++++.+.++..+.+.+++..|+|||+.+..+ .-+..+..+.+.-|...
T Consensus 139 ~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~K 218 (387)
T KOG0329|consen 139 SVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEK 218 (387)
T ss_pred CceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 68999999999999999999999999999999999999999999999999999999988754 45688899999999999
Q ss_pred cEEEEEeecChhHHHHHHHhcCCCeEEEecCC-ccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHH
Q 023157 88 QVGVFSATMPPEALEITRKFMNKPVRILVKRD-ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVD 166 (286)
Q Consensus 88 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~ 166 (286)
|+..+|||++.+..-..+.++.+|..+....+ .....++++++......+ |...+..++....-+.++||+.+...
T Consensus 219 QvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e-KNrkl~dLLd~LeFNQVvIFvKsv~R-- 295 (387)
T KOG0329|consen 219 QVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE-KNRKLNDLLDVLEFNQVVIFVKSVQR-- 295 (387)
T ss_pred eeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh-hhhhhhhhhhhhhhcceeEeeehhhh--
Confidence 99999999999999999999999988777654 345667888888777665 77778888887778899999998554
Q ss_pred HHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccC
Q 023157 167 WLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 246 (286)
Q Consensus 167 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 246 (286)
+. | ..+ +|||+.+++|+|+..++.++.||.|.+..+|++|+||+||.
T Consensus 296 -l~----------------------------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrf 342 (387)
T KOG0329|consen 296 -LS----------------------------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 342 (387)
T ss_pred -hh----------------------------h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcc
Confidence 10 2 122 89999999999999999999999999999999999999999
Q ss_pred CCcceEEEEeccC-cHHHHHHHHHHhchhcccCCcc
Q 023157 247 GRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPSN 281 (286)
Q Consensus 247 ~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 281 (286)
|.+|.++.+++.. +...++.....+...+.++|+.
T Consensus 343 Gtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 343 GTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred ccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 9999999998775 6777778888888888888876
No 62
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=2.9e-29 Score=202.62 Aligned_cols=254 Identities=19% Similarity=0.241 Sum_probs=186.6
Q ss_pred cCceEEEEEcCcchHHHHHHHh------CCCcEEEeCcHHHHHH----HhcCCCCCCCccEEEEehhhHhhccc--cHHH
Q 023157 8 LGVKVHACVGGTSVREDQRILQ------AGVHVVVGTPGRVFDM----LRRQSLRPDYIKMFVLDEADEMLSRG--FKDQ 75 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~------~~~~iii~Tp~~l~~~----~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~ 75 (286)
+.+++..+.+..+..++.+++. .+..++..||++.... +.+.....+.+.++|+||+|++.+|+ |++.
T Consensus 84 LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPD 163 (641)
T KOG0352|consen 84 LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPD 163 (641)
T ss_pred cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcc
Confidence 3455566667667666665543 3788999999876432 22222334457899999999999986 5555
Q ss_pred HH---HHHHhCCcCccEEEEEeecChhHHHHHH--HhcCCCeEEEecCCccccccceeEEEEccchh---hHHHHHHHHH
Q 023157 76 IY---DIFQLLPAKVQVGVFSATMPPEALEITR--KFMNKPVRILVKRDELTLEGIKQFYVNVEKEE---WKLETLCDLY 147 (286)
Q Consensus 76 ~~---~i~~~~~~~~~~i~~SAT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~l~~~~ 147 (286)
+. .+.+.+ +...++++|||.++...+.+. ..+.+|+.+...+. -..+.++...... +.+..+..+-
T Consensus 164 YL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~-----FR~NLFYD~~~K~~I~D~~~~LaDF~ 237 (641)
T KOG0352|consen 164 YLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT-----FRDNLFYDNHMKSFITDCLTVLADFS 237 (641)
T ss_pred hhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc-----hhhhhhHHHHHHHHhhhHhHhHHHHH
Confidence 54 444555 467799999999988776543 33445543321111 1112222222111 1122222222
Q ss_pred hhc-------------cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCcc
Q 023157 148 ETL-------------AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 214 (286)
Q Consensus 148 ~~~-------------~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~ 214 (286)
... ..+..||||.+++++|.++-.|..+|+++..+|+++...+|..+-+.|-+++..||+||..+++
T Consensus 238 ~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGM 317 (641)
T KOG0352|consen 238 SSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGM 317 (641)
T ss_pred HHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEecccc
Confidence 111 1246899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHH
Q 023157 215 GIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 267 (286)
Q Consensus 215 Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 267 (286)
|+|-|++++||++++|.+..-|+|-.||+||.|..++|-++|++.|....+-+
T Consensus 318 GVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 318 GVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred ccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 99999999999999999999999999999999999999999999887766654
No 63
>PRK13766 Hef nuclease; Provisional
Probab=99.96 E-value=1.2e-27 Score=220.72 Aligned_cols=249 Identities=20% Similarity=0.284 Sum_probs=177.1
Q ss_pred ceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccE
Q 023157 10 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 89 (286)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 89 (286)
.++..++|+.+..+....+. +.+|+|+||+.+.+.+..+.+.+.++++||+||||++.+......+........+.+++
T Consensus 87 ~~v~~~~g~~~~~~r~~~~~-~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~i 165 (773)
T PRK13766 87 EKIVVFTGEVSPEKRAELWE-KAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLV 165 (773)
T ss_pred ceEEEEeCCCCHHHHHHHHh-CCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEE
Confidence 38888999888776555554 47999999999998888888888999999999999876554344444444444456789
Q ss_pred EEEEeecChhHHH---HHHHhcCCCe--------------------EEEecCCc------------------------cc
Q 023157 90 GVFSATMPPEALE---ITRKFMNKPV--------------------RILVKRDE------------------------LT 122 (286)
Q Consensus 90 i~~SAT~~~~~~~---~~~~~~~~~~--------------------~~~~~~~~------------------------~~ 122 (286)
+++||||...... ..+.+..... .+...... ..
T Consensus 166 l~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~ 245 (773)
T PRK13766 166 LGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVI 245 (773)
T ss_pred EEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 9999998533211 1111100000 00000000 00
Q ss_pred --cc-------------cceeEE---------------------------------------------------------
Q 023157 123 --LE-------------GIKQFY--------------------------------------------------------- 130 (286)
Q Consensus 123 --~~-------------~i~~~~--------------------------------------------------------- 130 (286)
.. .+....
T Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~ 325 (773)
T PRK13766 246 VSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKR 325 (773)
T ss_pred ccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHH
Confidence 00 000000
Q ss_pred --------------EEccchhhHHHHHHHHHhh----ccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCC-------
Q 023157 131 --------------VNVEKEEWKLETLCDLYET----LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGD------- 185 (286)
Q Consensus 131 --------------~~~~~~~~~~~~l~~~~~~----~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~------- 185 (286)
..+.....|...+..+++. .++.++||||+++.+++.+++.|...++.+..+||.
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~ 405 (773)
T PRK13766 326 LVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDK 405 (773)
T ss_pred HHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccC
Confidence 0000111234444445443 466799999999999999999999889988888876
Q ss_pred -CCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCc
Q 023157 186 -MDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 260 (286)
Q Consensus 186 -~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 260 (286)
+++.+|..+++.|++|+.++||||+++++|+|+|++++||++++|++...|+||+||+||.+ +|.+++++....
T Consensus 406 ~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t 480 (773)
T PRK13766 406 GMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGT 480 (773)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCC
Confidence 89999999999999999999999999999999999999999999999999999999999975 488888876653
No 64
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=205.43 Aligned_cols=246 Identities=20% Similarity=0.273 Sum_probs=189.6
Q ss_pred cccCceEEEEEcCcchHHHHHHH----hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHH----H
Q 023157 6 DYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI----Y 77 (286)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~----~ 77 (286)
..+|+++..-.|...+......+ ....||||+|.+-+-.+++.+ .++.+++.|||||+|.+.+...++.+ .
T Consensus 286 s~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~ 364 (830)
T COG1202 286 SKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIG 364 (830)
T ss_pred hcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHH
Confidence 45688887777755444332211 236899999999998877766 67889999999999988775544333 3
Q ss_pred HHHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhc-------
Q 023157 78 DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL------- 150 (286)
Q Consensus 78 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~------- 150 (286)
++...+ +.+|+|++|||..++ .++.+.+....+.+ +..+..+..+...+.+...|.+.+..+.+..
T Consensus 365 RLr~l~-~~AQ~i~LSATVgNp-~elA~~l~a~lV~y-----~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~ssk 437 (830)
T COG1202 365 RLRYLF-PGAQFIYLSATVGNP-EELAKKLGAKLVLY-----DERPVPLERHLVFARNESEKWDIIARLVKREFSTESSK 437 (830)
T ss_pred HHHHhC-CCCeEEEEEeecCCh-HHHHHHhCCeeEee-----cCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhcc
Confidence 333333 589999999998655 45565554444332 1234566777777887776777777666432
Q ss_pred -cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEE---
Q 023157 151 -AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--- 226 (286)
Q Consensus 151 -~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~--- 226 (286)
-.+++|||++|++.|.+++..|..+|+.+..+|++++..+|..+...|.+++..++|+|.+++.|+|+|....|.-
T Consensus 438 g~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLa 517 (830)
T COG1202 438 GYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLA 517 (830)
T ss_pred CcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHH
Confidence 3468999999999999999999999999999999999999999999999999999999999999999998665531
Q ss_pred ccCCC-CcchhhhhhcccccCC--CcceEEEEeccC
Q 023157 227 YDLPT-QPENYLHRIGRSGRFG--RKGVAINFVTRD 259 (286)
Q Consensus 227 ~~~~~-s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~ 259 (286)
++..| |+.+|.||+||+||.+ ..|.||+++.+.
T Consensus 518 MG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 518 MGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 34444 8999999999999986 349999999774
No 65
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.96 E-value=2.8e-28 Score=218.83 Aligned_cols=249 Identities=23% Similarity=0.329 Sum_probs=178.5
Q ss_pred cccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCC-
Q 023157 6 DYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP- 84 (286)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~- 84 (286)
+.+|++|...+|+.....+.. ..++|+|+|||++....++.......+++||+||+|.+.+...++.+..+.+...
T Consensus 100 ~~~GirV~~~TgD~~~~~~~l---~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~ 176 (766)
T COG1204 100 EELGIRVGISTGDYDLDDERL---ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRR 176 (766)
T ss_pred HhcCCEEEEecCCcccchhhh---ccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHh
Confidence 578999999999988554322 3589999999999999999888888899999999998877755666655554432
Q ss_pred --cCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccc-cccceeEEEEccchh------hHHHHHHHHHhh-ccCcc
Q 023157 85 --AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT-LEGIKQFYVNVEKEE------WKLETLCDLYET-LAITQ 154 (286)
Q Consensus 85 --~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~------~~~~~l~~~~~~-~~~~~ 154 (286)
..+|++++|||++. ..++..+.-.++....+...... .......+....... .....++..+.. ..+++
T Consensus 177 ~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~q 255 (766)
T COG1204 177 LNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQ 255 (766)
T ss_pred hCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCe
Confidence 34899999999974 35555555555442222222111 112222222222111 122333333332 35679
Q ss_pred eEEEecchhhHHHHHHHHhcC-------------------------------------CCeeEEecCCCCHHHHHHHHHH
Q 023157 155 SVIFVNTRRKVDWLTDKMRSR-------------------------------------DHTVSATHGDMDQNTRDIIMRE 197 (286)
Q Consensus 155 ~ivf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~~~~r~~~~~~ 197 (286)
++|||++++.+...++.++.. -.+++.+|++++.++|..+.+.
T Consensus 256 vLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~ 335 (766)
T COG1204 256 VLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDA 335 (766)
T ss_pred EEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHH
Confidence 999999999999999988730 0348899999999999999999
Q ss_pred hhcCCCcEEEEecCCccCCCCCCCcEEE----Ecc-----CCCCcchhhhhhcccccCCCc--ceEEEEecc
Q 023157 198 FRSGSSRVLITTDLLARGIDVQQVSLVI----NYD-----LPTQPENYLHRIGRSGRFGRK--GVAINFVTR 258 (286)
Q Consensus 198 f~~~~~~vlv~T~~~~~Gidi~~~~~vi----~~~-----~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~ 258 (286)
|+.|+++||+||++++.|+|+|.-..|| .++ .+.++.++.||.||+||.|-. |.++++...
T Consensus 336 Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~ 407 (766)
T COG1204 336 FRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATS 407 (766)
T ss_pred HhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecC
Confidence 9999999999999999999998854444 244 345688999999999998754 666666633
No 66
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.96 E-value=1.6e-27 Score=220.55 Aligned_cols=222 Identities=20% Similarity=0.305 Sum_probs=163.1
Q ss_pred CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhH-hhccccHH-HHHHHHHhCCcCccEEEEEeecChhHHHHHHHh
Q 023157 30 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE-MLSRGFKD-QIYDIFQLLPAKVQVGVFSATMPPEALEITRKF 107 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~~~-~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 107 (286)
.++.|+++||++|++.+.... .++++++||+||+|+ ..+.++.. .+..++... ++.|+++||||++.. .+.+.+
T Consensus 162 ~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r-pdlKvILmSATid~e--~fs~~F 237 (1294)
T PRK11131 162 DNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR-PDLKVIITSATIDPE--RFSRHF 237 (1294)
T ss_pred CCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhcC-CCceEEEeeCCCCHH--HHHHHc
Confidence 468999999999999988654 488899999999995 55655543 344444333 367999999999754 444444
Q ss_pred cCCCeEEEecCCccccccceeEEEEccch-----hhHHHHHHHHH---hhccCcceEEEecchhhHHHHHHHHhcCCCe-
Q 023157 108 MNKPVRILVKRDELTLEGIKQFYVNVEKE-----EWKLETLCDLY---ETLAITQSVIFVNTRRKVDWLTDKMRSRDHT- 178 (286)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~l~~~~---~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~- 178 (286)
.+.+ .+.+..... .+...+...... ...+..+...+ .....+.+|||+++..+++.+++.|++.+..
T Consensus 238 ~~ap-vI~V~Gr~~---pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~ 313 (1294)
T PRK11131 238 NNAP-IIEVSGRTY---PVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRH 313 (1294)
T ss_pred CCCC-EEEEcCccc---cceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCc
Confidence 4444 344433222 244444443221 11222222221 1234578999999999999999999887654
Q ss_pred --eEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccC------------------CCCcchhhh
Q 023157 179 --VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PTQPENYLH 238 (286)
Q Consensus 179 --~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~------------------~~s~~~~~Q 238 (286)
+..+||+++.++|..+++. .|..+|+|||+++++|+|+|++++||.+|. |.|..+|.|
T Consensus 314 ~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~Q 391 (1294)
T PRK11131 314 TEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQ 391 (1294)
T ss_pred ceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhh
Confidence 6789999999999999885 578899999999999999999999999863 245678999
Q ss_pred hhcccccCCCcceEEEEeccCcHH
Q 023157 239 RIGRSGRFGRKGVAINFVTRDDER 262 (286)
Q Consensus 239 ~~GR~~R~~~~g~~~~~~~~~~~~ 262 (286)
|.||+||. .+|.||.+++..+..
T Consensus 392 RaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 392 RKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred hccccCCC-CCcEEEEeCCHHHHH
Confidence 99999998 789999999976543
No 67
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=1e-26 Score=205.64 Aligned_cols=241 Identities=15% Similarity=0.152 Sum_probs=160.4
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhc--------CCCCCCCccEEEEehhhHhhccccHHHHHHHH
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR--------QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF 80 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~--------~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~ 80 (286)
...+..++|+.... .....+|+|+|++++.+...+ ..+....+++||+||+|++.... +..++
T Consensus 326 ~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~----fr~il 396 (732)
T TIGR00603 326 DSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM----FRRVL 396 (732)
T ss_pred CceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH----HHHHH
Confidence 34566666653221 123468999999988643222 11233467899999999985443 44455
Q ss_pred HhCCcCccEEEEEeecChhHHH--HHHHhcCCCeEEEecCCcc----cccccee--EEEEcc------------------
Q 023157 81 QLLPAKVQVGVFSATMPPEALE--ITRKFMNKPVRILVKRDEL----TLEGIKQ--FYVNVE------------------ 134 (286)
Q Consensus 81 ~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~i~~--~~~~~~------------------ 134 (286)
..+. ....+++||||..+... .+..+++ |..+...-.+. -...+.. .+..+.
T Consensus 397 ~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l 474 (732)
T TIGR00603 397 TIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLL 474 (732)
T ss_pred HhcC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHH
Confidence 4443 44589999999643221 2222222 22111111000 0001111 111111
Q ss_pred --chhhHHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcC-CCcEEEEe
Q 023157 135 --KEEWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSRVLITT 209 (286)
Q Consensus 135 --~~~~~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T 209 (286)
....|+..+..+++.. .+.++||||.+...++.+++.| ++..+||+++..+|.++++.|+.| +.++||+|
T Consensus 475 ~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S 549 (732)
T TIGR00603 475 YVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLS 549 (732)
T ss_pred hhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEe
Confidence 0112556666666644 6789999999999999999988 356789999999999999999875 78999999
Q ss_pred cCCccCCCCCCCcEEEEccCC-CCcchhhhhhcccccCCCcce-------EEEEeccCcHHHHH
Q 023157 210 DLLARGIDVQQVSLVINYDLP-TQPENYLHRIGRSGRFGRKGV-------AINFVTRDDERMLF 265 (286)
Q Consensus 210 ~~~~~Gidi~~~~~vi~~~~~-~s~~~~~Q~~GR~~R~~~~g~-------~~~~~~~~~~~~~~ 265 (286)
+++.+|+|+|++++||+++.| .|..+|+||+||++|.+.+|. .|.+++++..+...
T Consensus 550 kVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~ 613 (732)
T TIGR00603 550 KVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYY 613 (732)
T ss_pred cccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHH
Confidence 999999999999999999987 599999999999999865544 48888887655544
No 68
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=2.5e-26 Score=207.51 Aligned_cols=243 Identities=19% Similarity=0.241 Sum_probs=195.1
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIY 77 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~ 77 (286)
++-++.++++|..+..-.+..++..+++ +..||+|+| +-+....+.+.+++++||||-|++. -.-+
T Consensus 664 keRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEEqRFG-----Vk~K 733 (1139)
T COG1197 664 KERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEEQRFG-----VKHK 733 (1139)
T ss_pred HHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEechhhcC-----ccHH
Confidence 3456778999999999988888776664 389999999 6677778889999999999999954 3334
Q ss_pred HHHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEE
Q 023157 78 DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVI 157 (286)
Q Consensus 78 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iv 157 (286)
+-++.+..+..++-|||||-|.+..++-...++.-.+...+ ..+-.++.+....++.. ..+++.+-+ ..++++..
T Consensus 734 EkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP--~~R~pV~T~V~~~d~~~-ireAI~REl--~RgGQvfY 808 (1139)
T COG1197 734 EKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPP--EDRLPVKTFVSEYDDLL-IREAILREL--LRGGQVFY 808 (1139)
T ss_pred HHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCC--CCCcceEEEEecCChHH-HHHHHHHHH--hcCCEEEE
Confidence 44444456778999999999999998877776655444433 34445666666555544 223333222 34678888
Q ss_pred EecchhhHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCC-CCcc
Q 023157 158 FVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP-TQPE 234 (286)
Q Consensus 158 f~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~-~s~~ 234 (286)
..|..+..+.+++.|++. ...+.+.||.|+..+-.+++..|.+|+.+|||||.+++.|+|+|+++.+|+-++. ...+
T Consensus 809 v~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLs 888 (1139)
T COG1197 809 VHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLA 888 (1139)
T ss_pred EecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHH
Confidence 889999999999999875 5689999999999999999999999999999999999999999999999988774 4789
Q ss_pred hhhhhhcccccCCCcceEEEEeccC
Q 023157 235 NYLHRIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 235 ~~~Q~~GR~~R~~~~g~~~~~~~~~ 259 (286)
++.|..||+||.++.+++|.++.+.
T Consensus 889 QLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 889 QLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred HHHHhccccCCccceEEEEEeecCc
Confidence 9999999999999999999999864
No 69
>PRK09401 reverse gyrase; Reviewed
Probab=99.95 E-value=2e-26 Score=215.60 Aligned_cols=231 Identities=21% Similarity=0.286 Sum_probs=174.4
Q ss_pred cccccccCceEEEEEcCcch-----HHHHHHHh-CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhc------
Q 023157 2 RALGDYLGVKVHACVGGTSV-----REDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS------ 69 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~-~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~------ 69 (286)
++++...++.+..+.|+.+. .+....+. ++++|+|+||++|.+.+. .+....++++|+||||++..
T Consensus 144 ~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id 221 (1176)
T PRK09401 144 EKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNID 221 (1176)
T ss_pred HHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchh
Confidence 45666678888888776542 22223333 469999999999998776 34556689999999999886
Q ss_pred -----cccH-HHHHHHHHhCCc------------------------CccEEEEEeecChhHHHHHHHhcCCCeEEEecCC
Q 023157 70 -----RGFK-DQIYDIFQLLPA------------------------KVQVGVFSATMPPEALEITRKFMNKPVRILVKRD 119 (286)
Q Consensus 70 -----~~~~-~~~~~i~~~~~~------------------------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 119 (286)
.+|. ..+..++..++. ..|++++|||+++..... ..+..+..+.....
T Consensus 222 ~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~--~l~~~ll~~~v~~~ 299 (1176)
T PRK09401 222 KLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV--KLFRELLGFEVGSP 299 (1176)
T ss_pred hHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH--HHhhccceEEecCc
Confidence 3453 456666655543 678999999998642221 22334444555555
Q ss_pred ccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhh---HHHHHHHHhcCCCeeEEecCCCCHHHHHHHHH
Q 023157 120 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRK---VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 196 (286)
Q Consensus 120 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 196 (286)
.....++.+.+...+ .+...+..+++... .++||||+++.. |+.+++.|+..|+.+..+||++ .+.++
T Consensus 300 ~~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~ 370 (1176)
T PRK09401 300 VFYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFE 370 (1176)
T ss_pred ccccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHH
Confidence 555667787777655 35566777776554 589999999888 9999999999999999999999 23459
Q ss_pred HhhcCCCcEEEE----ecCCccCCCCCC-CcEEEEccCCC------Ccchhhhhhccccc
Q 023157 197 EFRSGSSRVLIT----TDLLARGIDVQQ-VSLVINYDLPT------QPENYLHRIGRSGR 245 (286)
Q Consensus 197 ~f~~~~~~vlv~----T~~~~~Gidi~~-~~~vi~~~~~~------s~~~~~Q~~GR~~R 245 (286)
+|++|+.+|||| |+.+++|+|+|+ +++||++|.|. ....+.+|+||+.+
T Consensus 371 ~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 371 KFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 999999999999 589999999999 89999999998 66789999999964
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=8.3e-26 Score=189.52 Aligned_cols=204 Identities=14% Similarity=0.228 Sum_probs=138.4
Q ss_pred CCCcEEEeCcHHHHHHHhcCCC--------CCCCccEEEEehhhHhhccccH-----HHHHHHHHhCCcCccEEEEEeec
Q 023157 30 AGVHVVVGTPGRVFDMLRRQSL--------RPDYIKMFVLDEADEMLSRGFK-----DQIYDIFQLLPAKVQVGVFSATM 96 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~~~~--------~~~~~~~iIiDE~h~~~~~~~~-----~~~~~i~~~~~~~~~~i~~SAT~ 96 (286)
..+.|++|||+++..+++.... .+.++++||+||+|.+..+... .....+.+......+++++|||+
T Consensus 112 ~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~ 191 (357)
T TIGR03158 112 STPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATP 191 (357)
T ss_pred CCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCC
Confidence 4688999999999876543111 2467899999999987654322 12233333333457999999999
Q ss_pred ChhHHHHHHHh--cCCCeEEEecC-----C-----cc--------ccccceeEEEEccchhhHHHHHH-------HHHhh
Q 023157 97 PPEALEITRKF--MNKPVRILVKR-----D-----EL--------TLEGIKQFYVNVEKEEWKLETLC-------DLYET 149 (286)
Q Consensus 97 ~~~~~~~~~~~--~~~~~~~~~~~-----~-----~~--------~~~~i~~~~~~~~~~~~~~~~l~-------~~~~~ 149 (286)
++......... .+.+....... + .. ..+.+.+.+.. .. ..+...+. +.++.
T Consensus 192 ~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~-~~~~~~l~~l~~~i~~~~~~ 269 (357)
T TIGR03158 192 DPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-AP-DFKEEELSELAEEVIERFRQ 269 (357)
T ss_pred CHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CC-chhHHHHHHHHHHHHHHHhc
Confidence 98877766654 33332111111 0 00 01234444443 11 12222222 22223
Q ss_pred ccCcceEEEecchhhHHHHHHHHhcCC--CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEc
Q 023157 150 LAITQSVIFVNTRRKVDWLTDKMRSRD--HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 227 (286)
Q Consensus 150 ~~~~~~ivf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~ 227 (286)
.++++++|||++++.++.+++.|++.+ ..+..+||.+++.+|.+. ++..|||||+++++|+|+|.+ +|| +
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~ 341 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-F 341 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-E
Confidence 356799999999999999999999864 578889999999888654 478999999999999999976 565 4
Q ss_pred cCCCCcchhhhhhcccc
Q 023157 228 DLPTQPENYLHRIGRSG 244 (286)
Q Consensus 228 ~~~~s~~~~~Q~~GR~~ 244 (286)
+ |.+..+|+||+||+|
T Consensus 342 ~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 342 S-ARDAAAFWQRLGRLG 357 (357)
T ss_pred C-CCCHHHHhhhcccCC
Confidence 5 889999999999986
No 71
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.95 E-value=1.3e-26 Score=187.79 Aligned_cols=272 Identities=29% Similarity=0.495 Sum_probs=212.3
Q ss_pred ceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCC-----
Q 023157 10 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP----- 84 (286)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~----- 84 (286)
++...+.||.-.+.+.+.++.+.+|+|+||.++.+.+....+.+..+.+++.||++.++..++...+.++...+|
T Consensus 318 ~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsd 397 (725)
T KOG0349|consen 318 VRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSD 397 (725)
T ss_pred hhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcC
Confidence 455577888888888999999999999999999999999999999999999999999998888877777776664
Q ss_pred -cCccEEEEEeecCh-hHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchh-------------------------
Q 023157 85 -AKVQVGVFSATMPP-EALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEE------------------------- 137 (286)
Q Consensus 85 -~~~~~i~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------------------------- 137 (286)
...|.+.+|||+.. +.....+..+.-|..+.....+..+..+.+....+...-
T Consensus 398 g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg 477 (725)
T KOG0349|consen 398 GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPG 477 (725)
T ss_pred CcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccc
Confidence 35789999999863 233444455566666666665555555444443322210
Q ss_pred --------hHHH-----HHHHHHhhccCcceEEEecchhhHHHHHHHHhcC---CCeeEEecCCCCHHHHHHHHHHhhcC
Q 023157 138 --------WKLE-----TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR---DHTVSATHGDMDQNTRDIIMREFRSG 201 (286)
Q Consensus 138 --------~~~~-----~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~ 201 (286)
.... .-...++...-+++||||.+...+..+-+++.++ .+++.-+|++..+.+|.+.+++|+.+
T Consensus 478 ~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~ 557 (725)
T KOG0349|consen 478 QVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF 557 (725)
T ss_pred cCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc
Confidence 0111 1112233445568999999999999999999876 36899999999999999999999999
Q ss_pred CCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEecc-----------------------
Q 023157 202 SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR----------------------- 258 (286)
Q Consensus 202 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~----------------------- 258 (286)
+.+.||||+++++|+|+..+.++|.+.+|.....|++|+||+||...-|.++.++-.
T Consensus 558 dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ekvwyh~c~srgr~c~nt~l~ 637 (725)
T KOG0349|consen 558 DVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLT 637 (725)
T ss_pred CeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccchheeehhhhccCCcccCCccc
Confidence 999999999999999999999999999999999999999999998666776655532
Q ss_pred ---------CcHHHHHHHHHHhchhcccCCcc
Q 023157 259 ---------DDERMLFDIQKFYNVVIEELPSN 281 (286)
Q Consensus 259 ---------~~~~~~~~~~~~~~~~~~~~~~~ 281 (286)
.+...+..++.+++..++++...
T Consensus 638 e~~gc~iwyne~~llaeve~hln~ti~qv~~~ 669 (725)
T KOG0349|consen 638 EVRGCCIWYNEPNLLAEVEDHLNITIQQVDKT 669 (725)
T ss_pred cccceEEEeCchhHHHHHHHhhcceeeeeCCC
Confidence 34556667778888877776544
No 72
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=3.9e-26 Score=203.78 Aligned_cols=124 Identities=19% Similarity=0.230 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHhh--ccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCcc
Q 023157 137 EWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 214 (286)
Q Consensus 137 ~~~~~~l~~~~~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~ 214 (286)
..|...+...+.. ..+.++||||++...++.++..|...|+.+..+|+++...++..+...+..| .|+|||+++++
T Consensus 411 ~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgR 488 (790)
T PRK09200 411 DEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGR 488 (790)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhc
Confidence 3477777777754 3678999999999999999999999999999999999988888887777766 69999999999
Q ss_pred CCCC---CCCc-----EEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHH
Q 023157 215 GIDV---QQVS-----LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 262 (286)
Q Consensus 215 Gidi---~~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 262 (286)
|+|+ |++. +||.++.|.|.+.|.||.||+||.|.+|.+..+++..|.-
T Consensus 489 G~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l 544 (790)
T PRK09200 489 GTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDL 544 (790)
T ss_pred CcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHH
Confidence 9999 6898 9999999999999999999999999999999999876543
No 73
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.95 E-value=1.1e-25 Score=198.09 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=109.7
Q ss_pred HHHHHHHHHh--hccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCC
Q 023157 139 KLETLCDLYE--TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 216 (286)
Q Consensus 139 ~~~~l~~~~~--~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 216 (286)
|...+...+. ...+.++||||++...++.+++.|.+.|+....+|++ +.+|...+..|..+...|+|||+++++|+
T Consensus 390 k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGt 467 (745)
T TIGR00963 390 KWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGT 467 (745)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCc
Confidence 5555555442 3467899999999999999999999999999999998 77888999999999999999999999999
Q ss_pred CCCC-------CcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHH
Q 023157 217 DVQQ-------VSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 263 (286)
Q Consensus 217 di~~-------~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 263 (286)
|++. .-+||.++.|.|.+.+.|+.||+||.|.+|.+..+++..|.-.
T Consensus 468 DI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 468 DIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM 521 (745)
T ss_pred CCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccHHHH
Confidence 9998 5599999999999999999999999999999999999876544
No 74
>PRK14701 reverse gyrase; Provisional
Probab=99.94 E-value=4.7e-26 Score=217.51 Aligned_cols=243 Identities=19% Similarity=0.231 Sum_probs=179.9
Q ss_pred CceEEEEEcCcchHHHHHH---Hh-CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhcc-----------ccH
Q 023157 9 GVKVHACVGGTSVREDQRI---LQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-----------GFK 73 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~---~~-~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-----------~~~ 73 (286)
++++..++|+.+..++... +. +.++|+|+||+.+.+.+... ...+++++|+||||+++.+ +|.
T Consensus 152 ~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~ 229 (1638)
T PRK14701 152 DVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFY 229 (1638)
T ss_pred ceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccccccccchhhhcCCCh
Confidence 5688899999987765432 33 35999999999998776542 2266899999999999863 566
Q ss_pred HHHHH----HHH----------------------hCCcCcc-EEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccc
Q 023157 74 DQIYD----IFQ----------------------LLPAKVQ-VGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGI 126 (286)
Q Consensus 74 ~~~~~----i~~----------------------~~~~~~~-~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 126 (286)
+.+.. +++ .+++..+ .+.+|||.++.. ....++..+..+...........+
T Consensus 230 ~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~~~~l~f~v~~~~~~lr~i 307 (1638)
T PRK14701 230 EEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLYRELLGFEVGSGRSALRNI 307 (1638)
T ss_pred HHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHhhcCeEEEecCCCCCCCCc
Confidence 55543 221 2244455 567899998641 122344566667776666666777
Q ss_pred eeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhh---HHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCC
Q 023157 127 KQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRK---VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS 203 (286)
Q Consensus 127 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 203 (286)
.+.+....... + ..+..+++.. +..+||||++++. |+.+++.|...|+.+..+|++ |...+++|++|+.
T Consensus 308 ~~~yi~~~~~~-k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~ 379 (1638)
T PRK14701 308 VDVYLNPEKII-K-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEI 379 (1638)
T ss_pred EEEEEECCHHH-H-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCC
Confidence 77776654433 3 4566777655 4789999999876 589999999999999999995 8899999999999
Q ss_pred cEEEEe----cCCccCCCCCC-CcEEEEccCCC---Ccchhhhhh-------------cccccCCCcceEEEEeccCcHH
Q 023157 204 RVLITT----DLLARGIDVQQ-VSLVINYDLPT---QPENYLHRI-------------GRSGRFGRKGVAINFVTRDDER 262 (286)
Q Consensus 204 ~vlv~T----~~~~~Gidi~~-~~~vi~~~~~~---s~~~~~Q~~-------------GR~~R~~~~g~~~~~~~~~~~~ 262 (286)
+||||| +.+++|+|+|+ +++||++|.|. |...|.|-. ||+||.|.++.+...+...+..
T Consensus 380 ~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~ 459 (1638)
T PRK14701 380 DYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVE 459 (1638)
T ss_pred CEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHH
Confidence 999999 47899999998 99999999999 777666654 9999998877666444444333
Q ss_pred H
Q 023157 263 M 263 (286)
Q Consensus 263 ~ 263 (286)
.
T Consensus 460 ~ 460 (1638)
T PRK14701 460 F 460 (1638)
T ss_pred H
Confidence 3
No 75
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.94 E-value=5.7e-26 Score=197.72 Aligned_cols=108 Identities=27% Similarity=0.450 Sum_probs=93.8
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC---CCeeEEe--------cCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR---DHTVSAT--------HGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 219 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~---~~~~~~~--------~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~ 219 (286)
+..++|||+.++..|..+.++|.+. ++....+ ..+|++.++.++++.|+.|+.+|||||+++++|+|++
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ 491 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIG 491 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcc
Confidence 4568999999999999999999732 2222222 2489999999999999999999999999999999999
Q ss_pred CCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCc
Q 023157 220 QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 260 (286)
Q Consensus 220 ~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 260 (286)
.++.||-||...|+...+||.|| ||. ++|.++++++..+
T Consensus 492 ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 492 ECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSE 530 (746)
T ss_pred cccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchh
Confidence 99999999999999999999999 997 6789888888543
No 76
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=2.9e-26 Score=213.01 Aligned_cols=245 Identities=20% Similarity=0.297 Sum_probs=170.3
Q ss_pred ccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhH-hhccccHH-HHHHHHHh
Q 023157 5 GDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE-MLSRGFKD-QIYDIFQL 82 (286)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~-~~~~~~~~-~~~~i~~~ 82 (286)
.+.+|..+...+|.....+. ....++.|.++|++.|++.+...+ .++.+++||+||+|. ..+.++.- .+..++..
T Consensus 132 A~elg~~lG~~VGY~vR~~~--~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~ 208 (1283)
T TIGR01967 132 AEELGTPLGEKVGYKVRFHD--QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR 208 (1283)
T ss_pred HHHhCCCcceEEeeEEcCCc--ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh
Confidence 34455555555553211111 123467899999999999887655 478899999999995 55555543 35566555
Q ss_pred CCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccch-----hhHHH----HHHHHHhhccCc
Q 023157 83 LPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE-----EWKLE----TLCDLYETLAIT 153 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~----~l~~~~~~~~~~ 153 (286)
. ++.|+++||||++.. .+.+.+...+ .+.+..... .+...+...... ..... .+..+... ..+
T Consensus 209 r-pdLKlIlmSATld~~--~fa~~F~~ap-vI~V~Gr~~---PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~-~~G 280 (1283)
T TIGR01967 209 R-PDLKIIITSATIDPE--RFSRHFNNAP-IIEVSGRTY---PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE-GPG 280 (1283)
T ss_pred C-CCCeEEEEeCCcCHH--HHHHHhcCCC-EEEECCCcc---cceeEEecccccccchhhhHHHHHHHHHHHHHhh-CCC
Confidence 4 468999999999743 4444443333 343333222 223333322211 11222 23333332 457
Q ss_pred ceEEEecchhhHHHHHHHHhcCC---CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCC
Q 023157 154 QSVIFVNTRRKVDWLTDKMRSRD---HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 230 (286)
Q Consensus 154 ~~ivf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~ 230 (286)
.+|||+++..+++.+++.|.+.+ ..+..+||+++.++|..+++.+ +..+|+|||++++.|+|+|++++||.+|.+
T Consensus 281 dILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~ 358 (1283)
T TIGR01967 281 DILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTA 358 (1283)
T ss_pred CEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCc
Confidence 99999999999999999998764 4588999999999999986643 346899999999999999999999998853
Q ss_pred ------------------CCcchhhhhhcccccCCCcceEEEEeccCcHHH
Q 023157 231 ------------------TQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 263 (286)
Q Consensus 231 ------------------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 263 (286)
.|.+++.||.||+||.+ +|.||.+++..+...
T Consensus 359 r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 359 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred cccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 35679999999999986 899999998775443
No 77
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.94 E-value=1.5e-25 Score=198.32 Aligned_cols=122 Identities=17% Similarity=0.229 Sum_probs=107.1
Q ss_pred hHHHHHHHHHhh--ccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccC
Q 023157 138 WKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 215 (286)
Q Consensus 138 ~~~~~l~~~~~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 215 (286)
.|...+...+.. ..+.++||||++...++.++..|...|+.+..+|+++...++..+...+..| .|+|||+++++|
T Consensus 408 ~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRG 485 (762)
T TIGR03714 408 EKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRG 485 (762)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccc
Confidence 377777776654 4677999999999999999999999999999999999998887777776666 699999999999
Q ss_pred CCCC---------CCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHH
Q 023157 216 IDVQ---------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 262 (286)
Q Consensus 216 idi~---------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 262 (286)
+|+| ++.+|+.++.|....+ .||.||+||.|.+|.+..+++..|.-
T Consensus 486 tDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 486 TDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred cCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhh
Confidence 9999 8899999999887666 99999999999999999999886543
No 78
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.4e-25 Score=196.19 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=132.0
Q ss_pred cEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhc--cCcceEEEecchhhH
Q 023157 88 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRKV 165 (286)
Q Consensus 88 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivf~~~~~~~ 165 (286)
++.+||||......++...+..++..+....+... ...+.+..+.. ..|...+...+... .+.++||||++...+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r--~~~~~~v~~t~-~~K~~aL~~~i~~~~~~~~pvLIft~t~~~s 486 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQR--RHLPDEVFLTA-AAKWAAVAARVRELHAQGRPVLVGTRSVAAS 486 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccc--eecCCEEEeCH-HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHH
Confidence 68889999887766676677666665555444322 22333333443 34777777777653 357899999999999
Q ss_pred HHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCC---CCc-----EEEEccCCCCcchhh
Q 023157 166 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ---QVS-----LVINYDLPTQPENYL 237 (286)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~---~~~-----~vi~~~~~~s~~~~~ 237 (286)
+.+++.|...|+.+..+||+++..+ ..+..+..++..|+|||+++++|+|++ ++. +||.++.|.|...|.
T Consensus 487 e~L~~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~ 564 (656)
T PRK12898 487 ERLSALLREAGLPHQVLNAKQDAEE--AAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDR 564 (656)
T ss_pred HHHHHHHHHCCCCEEEeeCCcHHHH--HHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHH
Confidence 9999999999999999999876544 444445555567999999999999999 565 999999999999999
Q ss_pred hhhcccccCCCcceEEEEeccCcH
Q 023157 238 HRIGRSGRFGRKGVAINFVTRDDE 261 (286)
Q Consensus 238 Q~~GR~~R~~~~g~~~~~~~~~~~ 261 (286)
||+||+||.|.+|.++.+++..|.
T Consensus 565 hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 565 QLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HhcccccCCCCCeEEEEEechhHH
Confidence 999999999999999999998653
No 79
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.94 E-value=2.8e-25 Score=202.82 Aligned_cols=137 Identities=20% Similarity=0.284 Sum_probs=119.5
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHh-cCCCeeEEecCCCCHHHHHHHHHHhhcC--CCcEEEEecCCccC
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR-SRDHTVSATHGDMDQNTRDIIMREFRSG--SSRVLITTDLLARG 215 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~T~~~~~G 215 (286)
|...+..+++...+.|+||||+++.++..+++.|+ ..|+.+..+||+|+..+|.++++.|+++ ...|||||+++++|
T Consensus 480 Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseG 559 (956)
T PRK04914 480 RVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEG 559 (956)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccC
Confidence 55567777777777899999999999999999994 6699999999999999999999999874 58999999999999
Q ss_pred CCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhc
Q 023157 216 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVI 275 (286)
Q Consensus 216 idi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (286)
+|++.+++||++|+|+++..|.||+||++|.|+.+.+.+++...+......+.+.+...+
T Consensus 560 lNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 560 RNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred CCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999988877776665555556665555533
No 80
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1.8e-24 Score=188.03 Aligned_cols=252 Identities=19% Similarity=0.233 Sum_probs=167.1
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhcccc-----H
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGF-----K 73 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~-----~ 73 (286)
++.+.++.++..++|+.+..+....+. +..+|+|+|+..+. .++.++++|||||.|....++. .
T Consensus 44 ~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ 116 (505)
T TIGR00595 44 RFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYH 116 (505)
T ss_pred HHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCc
Confidence 345567889999999988766554443 46899999997663 3677889999999998764431 1
Q ss_pred -HHHHHHHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchh---hHHHHHHHHH-h
Q 023157 74 -DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEE---WKLETLCDLY-E 148 (286)
Q Consensus 74 -~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~l~~~~-~ 148 (286)
..+..+.... .+++++++||||+.+....... +....+.....-.........+..+.... .....+.+.+ +
T Consensus 117 ar~~a~~ra~~-~~~~vil~SATPsles~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~ 193 (505)
T TIGR00595 117 ARDVAVYRAKK-FNCPVVLGSATPSLESYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQ 193 (505)
T ss_pred HHHHHHHHHHh-cCCCEEEEeCCCCHHHHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHH
Confidence 2233333333 5788999999988665554422 11112222111111111111112222111 0111222222 2
Q ss_pred hc-cCcceEEEecchhh------------------------------------------------------------HHH
Q 023157 149 TL-AITQSVIFVNTRRK------------------------------------------------------------VDW 167 (286)
Q Consensus 149 ~~-~~~~~ivf~~~~~~------------------------------------------------------------~~~ 167 (286)
.. .++++|||+|++.. +++
T Consensus 194 ~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~ 273 (505)
T TIGR00595 194 TLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQ 273 (505)
T ss_pred HHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHH
Confidence 22 45689999887654 477
Q ss_pred HHHHHhcC--CCeeEEecCCCCHHHH--HHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCC------------
Q 023157 168 LTDKMRSR--DHTVSATHGDMDQNTR--DIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------------ 231 (286)
Q Consensus 168 l~~~l~~~--~~~~~~~~~~~~~~~r--~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~------------ 231 (286)
+.+.|++. +..+..+|++++...+ .++++.|++|+.+|||+|++++.|+|+|+++.|+++++..
T Consensus 274 ~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~ 353 (505)
T TIGR00595 274 VEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAER 353 (505)
T ss_pred HHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHH
Confidence 77777765 6789999999876655 8999999999999999999999999999999998766532
Q ss_pred CcchhhhhhcccccCCCcceEEEEeccCcHHHH
Q 023157 232 QPENYLHRIGRSGRFGRKGVAINFVTRDDERML 264 (286)
Q Consensus 232 s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 264 (286)
....|.|++||+||.+..|.+++.+...+...+
T Consensus 354 ~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~ 386 (505)
T TIGR00595 354 GFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAI 386 (505)
T ss_pred HHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHH
Confidence 236789999999999889999987766554433
No 81
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.93 E-value=6.2e-25 Score=199.91 Aligned_cols=261 Identities=21% Similarity=0.326 Sum_probs=192.0
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhc-CC---CCCCCccEEEEehhhHhhccccH-------HHHH
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QS---LRPDYIKMFVLDEADEMLSRGFK-------DQIY 77 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~-~~---~~~~~~~~iIiDE~h~~~~~~~~-------~~~~ 77 (286)
++.+..++|+++.++...++.++++|++|||+||...+.+ .. ..+.++++||+||+|.+-. .++ ..+.
T Consensus 145 ~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG-v~GS~vA~llRRL~ 223 (851)
T COG1205 145 KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG-VQGSEVALLLRRLL 223 (851)
T ss_pred cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc-cchhHHHHHHHHHH
Confidence 4899999999999988888999999999999999885543 22 3466799999999996432 233 3334
Q ss_pred HHHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccc--------hhhHHHHHHHHHhh
Q 023157 78 DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK--------EEWKLETLCDLYET 149 (286)
Q Consensus 78 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~l~~~~~~ 149 (286)
.++...+.++|++++|||...+ .+....+.+......+... ..+....++...-+. ..........+...
T Consensus 224 ~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~-g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~ 301 (851)
T COG1205 224 RRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDED-GSPRGLRYFVRREPPIRELAESIRRSALAELATLAAL 301 (851)
T ss_pred HHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCC-CCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHH
Confidence 4445556789999999999755 4555666666555543332 233333333333330 01233334444433
Q ss_pred c--cCcceEEEecchhhHHHHH----HHHhcCC----CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCC
Q 023157 150 L--AITQSVIFVNTRRKVDWLT----DKMRSRD----HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 219 (286)
Q Consensus 150 ~--~~~~~ivf~~~~~~~~~l~----~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~ 219 (286)
. .+-++|+|+.++..++.++ ..+...+ ..+..+++++...+|..+...|++|+..++++|++++-|+|+.
T Consensus 302 ~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG 381 (851)
T COG1205 302 LVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIG 381 (851)
T ss_pred HHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeeh
Confidence 3 5679999999999999997 3444444 5689999999999999999999999999999999999999999
Q ss_pred CCcEEEEccCCC-CcchhhhhhcccccCCCcceEEEEeccC--cHHHHHHHHHHhc
Q 023157 220 QVSLVINYDLPT-QPENYLHRIGRSGRFGRKGVAINFVTRD--DERMLFDIQKFYN 272 (286)
Q Consensus 220 ~~~~vi~~~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~--~~~~~~~~~~~~~ 272 (286)
+++.||..+.|. +..++.||.||+||.++.+.++...... +.-+....+.+..
T Consensus 382 ~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 382 SLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred hhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 999999999999 9999999999999998777766666533 4444444555555
No 82
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.93 E-value=3.1e-24 Score=201.21 Aligned_cols=215 Identities=22% Similarity=0.328 Sum_probs=153.4
Q ss_pred ccccccCceEE---EEEcCcchHHHHHH---H-hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhc------
Q 023157 3 ALGDYLGVKVH---ACVGGTSVREDQRI---L-QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS------ 69 (286)
Q Consensus 3 ~~~~~~~~~~~---~~~g~~~~~~~~~~---~-~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~------ 69 (286)
++.+..|+++. .++|+.+..++... + .++++|+|+||++|.+.+..- .. +++++|+||||.+.+
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~L~~~k~vd 219 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDALLKASKNVD 219 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhhhhccccHH
Confidence 34445565543 57898887654332 2 346999999999998877642 12 789999999999987
Q ss_pred -----cccHHH-HHHH----------------------HHhCCcCcc--EEEEEeecChhHHHHHHHhcCCCeEEEecCC
Q 023157 70 -----RGFKDQ-IYDI----------------------FQLLPAKVQ--VGVFSATMPPEALEITRKFMNKPVRILVKRD 119 (286)
Q Consensus 70 -----~~~~~~-~~~i----------------------~~~~~~~~~--~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 119 (286)
.||... +..+ ++..+++.| ++++|||..+... ...++.+...+.....
T Consensus 220 ~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~--~~~l~r~ll~~~v~~~ 297 (1171)
T TIGR01054 220 KLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGK--RAKLFRELLGFEVGGG 297 (1171)
T ss_pred HHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCcccc--HHHHcccccceEecCc
Confidence 345442 3332 223344444 5678999543321 1133445555566555
Q ss_pred ccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecch---hhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHH
Q 023157 120 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTR---RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 196 (286)
Q Consensus 120 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 196 (286)
.....++.+.+..... +...+..+++.. +.++||||++. +.|+.+++.|++.|+.+..+||+++ ..+++
T Consensus 298 ~~~~r~I~~~~~~~~~---~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~ 369 (1171)
T TIGR01054 298 SDTLRNVVDVYVEDED---LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYE 369 (1171)
T ss_pred cccccceEEEEEeccc---HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHH
Confidence 5556677777665443 234455666554 36899999999 9999999999999999999999997 37899
Q ss_pred HhhcCCCcEEEEe----cCCccCCCCCC-CcEEEEccCC
Q 023157 197 EFRSGSSRVLITT----DLLARGIDVQQ-VSLVINYDLP 230 (286)
Q Consensus 197 ~f~~~~~~vlv~T----~~~~~Gidi~~-~~~vi~~~~~ 230 (286)
.|++|+.+||||| +.+++|+|+|+ +++||++|.|
T Consensus 370 ~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 370 KFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 9999999999995 89999999999 8999998765
No 83
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=192.16 Aligned_cols=256 Identities=20% Similarity=0.297 Sum_probs=181.6
Q ss_pred cccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcC---CCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 6 DYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ---SLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~---~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
..+|++|..++|+......+ + ..++|+|+|||+|--.-++. ...++.+.+|||||+|.+ ....++.++.+...
T Consensus 189 ~~~gi~v~ELTGD~ql~~te-i--~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlL-hd~RGpvlEtiVaR 264 (1230)
T KOG0952|consen 189 APLGISVRELTGDTQLTKTE-I--ADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLL-HDDRGPVLETIVAR 264 (1230)
T ss_pred ccccceEEEecCcchhhHHH-H--HhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhh-cCcccchHHHHHHH
Confidence 34689999999998876554 2 24789999999995443332 234666899999999965 44445655555433
Q ss_pred C-------CcCccEEEEEeecChhHHHHHHHhcCC-CeEEEecCCccccccceeEEEEccchh--hH--------HHHHH
Q 023157 83 L-------PAKVQVGVFSATMPPEALEITRKFMNK-PVRILVKRDELTLEGIKQFYVNVEKEE--WK--------LETLC 144 (286)
Q Consensus 83 ~-------~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~--------~~~l~ 144 (286)
. ....+++++|||+|. ..+...++..+ +..+........+..+.+.+.-....+ .. .+.+.
T Consensus 265 tlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~ 343 (1230)
T KOG0952|consen 265 TLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVV 343 (1230)
T ss_pred HHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHH
Confidence 2 457899999999974 34444444333 344444445555666666665444331 11 12222
Q ss_pred HHHhhccCcceEEEecchhhHHHHHHHHhcCC-----------------------CeeEEecCCCCHHHHHHHHHHhhcC
Q 023157 145 DLYETLAITQSVIFVNTRRKVDWLTDKMRSRD-----------------------HTVSATHGDMDQNTRDIIMREFRSG 201 (286)
Q Consensus 145 ~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~-----------------------~~~~~~~~~~~~~~r~~~~~~f~~~ 201 (286)
+.+ ..+.+++|||.+++.+.+.|+.|.+.. .+..++|+||...+|.-+.+.|..|
T Consensus 344 e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G 421 (1230)
T KOG0952|consen 344 EFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG 421 (1230)
T ss_pred HHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC
Confidence 222 256799999999999999988885421 3578999999999999999999999
Q ss_pred CCcEEEEecCCccCCCCCCCcEEEEccC-----CC------CcchhhhhhcccccCC--CcceEEEEeccCcHHHHHHHH
Q 023157 202 SSRVLITTDLLARGIDVQQVSLVINYDL-----PT------QPENYLHRIGRSGRFG--RKGVAINFVTRDDERMLFDIQ 268 (286)
Q Consensus 202 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~-----~~------s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~~~~~~~~ 268 (286)
.++||+||..++.|+|+|. .+||+-|- .. +..+.+|..|||||.. ..|.+++.++.+....+..+-
T Consensus 422 ~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 422 HIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred CceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHH
Confidence 9999999999999999987 55555443 22 4577899999999974 458899999888666666554
Q ss_pred H
Q 023157 269 K 269 (286)
Q Consensus 269 ~ 269 (286)
.
T Consensus 501 ~ 501 (1230)
T KOG0952|consen 501 T 501 (1230)
T ss_pred c
Confidence 3
No 84
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.92 E-value=2e-24 Score=172.78 Aligned_cols=257 Identities=19% Similarity=0.291 Sum_probs=189.9
Q ss_pred ccCceEEEEEcCcchHHHHH----HHh--CCCcEEEeCcHHHHHH---Hhc--CCCCCCCccEEEEehhhHhhccc--cH
Q 023157 7 YLGVKVHACVGGTSVREDQR----ILQ--AGVHVVVGTPGRVFDM---LRR--QSLRPDYIKMFVLDEADEMLSRG--FK 73 (286)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~----~~~--~~~~iii~Tp~~l~~~---~~~--~~~~~~~~~~iIiDE~h~~~~~~--~~ 73 (286)
.+|+....+....+.++-+. +.. ....++..||+.+... +.+ ..+....+.+|.+||+|+...|+ |+
T Consensus 156 qlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr 235 (695)
T KOG0353|consen 156 QLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFR 235 (695)
T ss_pred HhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccC
Confidence 34565555555555443221 221 2578999999988542 111 23445557899999999999886 55
Q ss_pred HHHH--HHHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccc-hhhHHHHHHHHHh-h
Q 023157 74 DQIY--DIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK-EEWKLETLCDLYE-T 149 (286)
Q Consensus 74 ~~~~--~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~l~~~~~-~ 149 (286)
+.+. .++..--+...++++|||.+.......+..+.-.....+ ....+++++......-+. ++.-.+.+..+++ .
T Consensus 236 ~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~ 314 (695)
T KOG0353|consen 236 PDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGD 314 (695)
T ss_pred cchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCceeEeeeCCCChHHHHHHHHHHhccc
Confidence 4443 233333357889999999998777766655443322222 223455555555444333 2334455555555 4
Q ss_pred ccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccC
Q 023157 150 LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 229 (286)
Q Consensus 150 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~ 229 (286)
..+...||||-+.+.++.++..|+++|+....+|+.|.++++.-+-+.|..|++.|+|+|-++++|+|-|++++||+...
T Consensus 315 f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl 394 (695)
T KOG0353|consen 315 FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSL 394 (695)
T ss_pred cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEeccc
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhh-------------------------------------------hhcccccCCCcceEEEEeccCcHHHH
Q 023157 230 PTQPENYLH-------------------------------------------RIGRSGRFGRKGVAINFVTRDDERML 264 (286)
Q Consensus 230 ~~s~~~~~Q-------------------------------------------~~GR~~R~~~~g~~~~~~~~~~~~~~ 264 (286)
|.|...|+| -.||+||.+.++.|+++|--.|.-..
T Consensus 395 ~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ 472 (695)
T KOG0353|consen 395 PKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKI 472 (695)
T ss_pred chhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhH
Confidence 999999999 67999999999999999977654333
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.92 E-value=1.9e-23 Score=187.93 Aligned_cols=253 Identities=18% Similarity=0.239 Sum_probs=168.0
Q ss_pred ccccccCceEEEEEcCcchHHHHHHH----hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccH-----
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK----- 73 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~----- 73 (286)
++.+.+|.++..++|+.+..++...+ .+.++|+|+|+..+. .++.++++||+||+|....++..
T Consensus 209 ~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~ 281 (679)
T PRK05580 209 RFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYH 281 (679)
T ss_pred HHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCc
Confidence 34456788999999998876655443 346899999997663 45778899999999976544211
Q ss_pred -HHHHHHHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCC--ccccccceeEEEEccchhh------HHHHHH
Q 023157 74 -DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD--ELTLEGIKQFYVNVEKEEW------KLETLC 144 (286)
Q Consensus 74 -~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~------~~~~l~ 144 (286)
..+. +......+.+++++||||+.+....... +....+..... ....+.+ ....+..... ....+.
T Consensus 282 ~r~va-~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v--~~id~~~~~~~~~~~~ls~~l~ 356 (679)
T PRK05580 282 ARDLA-VVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEV--EIIDMRELLRGENGSFLSPPLL 356 (679)
T ss_pred HHHHH-HHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeE--EEEechhhhhhcccCCCCHHHH
Confidence 1222 2233346789999999998766555432 12222222221 1111111 1111111000 001122
Q ss_pred HHH-hhc-cCcceEEEecchh-----------------------------------------------------------
Q 023157 145 DLY-ETL-AITQSVIFVNTRR----------------------------------------------------------- 163 (286)
Q Consensus 145 ~~~-~~~-~~~~~ivf~~~~~----------------------------------------------------------- 163 (286)
..+ +.. .+.+++||+|++.
T Consensus 357 ~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g 436 (679)
T PRK05580 357 EAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVG 436 (679)
T ss_pred HHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEee
Confidence 222 222 3458888887632
Q ss_pred -hHHHHHHHHhcC--CCeeEEecCCCC--HHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCC--C----
Q 023157 164 -KVDWLTDKMRSR--DHTVSATHGDMD--QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT--Q---- 232 (286)
Q Consensus 164 -~~~~l~~~l~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~--s---- 232 (286)
.++.+++.|++. +.++..+|+++. .+++.++++.|++|+.+|||+|++++.|+|+|+++.|+++++.. +
T Consensus 437 ~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdf 516 (679)
T PRK05580 437 PGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDF 516 (679)
T ss_pred ccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCcc
Confidence 345666666664 678899999986 56789999999999999999999999999999999998776542 2
Q ss_pred ------cchhhhhhcccccCCCcceEEEEeccCcHHHHHHH
Q 023157 233 ------PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 267 (286)
Q Consensus 233 ------~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 267 (286)
...|.|++||+||.+..|.+++.+...+...+..+
T Consensus 517 ra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 517 RASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred chHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 26799999999999899999988877665555444
No 86
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=2e-24 Score=193.79 Aligned_cols=261 Identities=18% Similarity=0.302 Sum_probs=185.3
Q ss_pred cccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCC--CCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 4 LGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS--LRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
....+|++|...+|+.....+.- .+..|+||||+.+--.-+++. -..+.++++||||.|.+ ....++.+..+..
T Consensus 387 Rla~~GI~V~ElTgD~~l~~~qi---eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL-hDdRGpvLESIVa 462 (1674)
T KOG0951|consen 387 RLAPLGITVLELTGDSQLGKEQI---EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL-HDDRGPVLESIVA 462 (1674)
T ss_pred hccccCcEEEEecccccchhhhh---hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc-ccccchHHHHHHH
Confidence 34678999999999866433221 246799999999955554422 22344789999999965 3334555544432
Q ss_pred hC-------CcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHH-------HHHHHHH
Q 023157 82 LL-------PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL-------ETLCDLY 147 (286)
Q Consensus 82 ~~-------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~l~~~~ 147 (286)
.. ...++++++|||+|... ....-+..++..+.....+..+..+.+.+.-+...+... ..+..++
T Consensus 463 Rt~r~ses~~e~~RlVGLSATLPNy~-DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm 541 (1674)
T KOG0951|consen 463 RTFRRSESTEEGSRLVGLSATLPNYE-DVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVL 541 (1674)
T ss_pred HHHHHhhhcccCceeeeecccCCchh-hhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHH
Confidence 22 34789999999998542 222222223344445555666677777777665543221 3456667
Q ss_pred hhccCcceEEEecchhhHHHHHHHHhcC-------------------------------------CCeeEEecCCCCHHH
Q 023157 148 ETLAITQSVIFVNTRRKVDWLTDKMRSR-------------------------------------DHTVSATHGDMDQNT 190 (286)
Q Consensus 148 ~~~~~~~~ivf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~~~~ 190 (286)
+....++++||+.+++++.+.|+.+++. .++.+++|+||+..+
T Consensus 542 ~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~d 621 (1674)
T KOG0951|consen 542 EHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKD 621 (1674)
T ss_pred HhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcch
Confidence 7777799999999999999998888631 156999999999999
Q ss_pred HHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEE----ccC------CCCcchhhhhhcccccCCCc--ceEEEEecc
Q 023157 191 RDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL------PTQPENYLHRIGRSGRFGRK--GVAINFVTR 258 (286)
Q Consensus 191 r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~----~~~------~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~ 258 (286)
|..+.+.|..|.++|+++|..+++|+|+|.-+.+|- +++ +.|+.+.+||.||+||.+-+ |..++....
T Consensus 622 R~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~ 701 (1674)
T KOG0951|consen 622 RELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDH 701 (1674)
T ss_pred HHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCc
Confidence 999999999999999999999999999998666652 443 35789999999999998654 556666666
Q ss_pred CcHHHHHHHHH
Q 023157 259 DDERMLFDIQK 269 (286)
Q Consensus 259 ~~~~~~~~~~~ 269 (286)
.+..++..+++
T Consensus 702 se~qyyls~mn 712 (1674)
T KOG0951|consen 702 SELQYYLSLMN 712 (1674)
T ss_pred hHhhhhHHhhh
Confidence 66555555443
No 87
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=1.6e-23 Score=183.80 Aligned_cols=238 Identities=19% Similarity=0.269 Sum_probs=173.3
Q ss_pred EEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEE
Q 023157 13 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 92 (286)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 92 (286)
..++|+..... ...++|+|.+.|.+++.++.-...++++||+||+|-+.+...+....+++-++|+..++|++
T Consensus 368 gLlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlL 440 (1248)
T KOG0947|consen 368 GLLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILL 440 (1248)
T ss_pred ceeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEE
Confidence 37788766554 47799999999999999877777889999999999777777778888999999999999999
Q ss_pred EeecChhHHHHHHHhcC-CCeEEEecCCccccccceeEEEEccch-----------------------------------
Q 023157 93 SATMPPEALEITRKFMN-KPVRILVKRDELTLEGIKQFYVNVEKE----------------------------------- 136 (286)
Q Consensus 93 SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------------------------- 136 (286)
|||.|.. .++..|..+ +...+.+.+....+..+.++++.-.+-
T Consensus 441 SATVPN~-~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~ 519 (1248)
T KOG0947|consen 441 SATVPNT-LEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSD 519 (1248)
T ss_pred eccCCCh-HHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccc
Confidence 9999754 454444432 233344444333334444443321100
Q ss_pred -----------------------------hhH---HHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCC--------
Q 023157 137 -----------------------------EWK---LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD-------- 176 (286)
Q Consensus 137 -----------------------------~~~---~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~-------- 176 (286)
..+ ...+...++....-+++|||.+++.|++.+++|...+
T Consensus 520 ~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKs 599 (1248)
T KOG0947|consen 520 ARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKS 599 (1248)
T ss_pred ccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHH
Confidence 000 1122222233333479999999999999999996532
Q ss_pred -------------------------------CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEE
Q 023157 177 -------------------------------HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 225 (286)
Q Consensus 177 -------------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi 225 (286)
.+++++||++=+-.+.-+...|..|-++||+||..+++|+|+|. ++||
T Consensus 600 eV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA-RtvV 678 (1248)
T KOG0947|consen 600 EVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA-RTVV 678 (1248)
T ss_pred HHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc-eeEE
Confidence 34899999999999999999999999999999999999999987 5555
Q ss_pred EccCC---------CCcchhhhhhcccccCCCc--ceEEEEeccC
Q 023157 226 NYDLP---------TQPENYLHRIGRSGRFGRK--GVAINFVTRD 259 (286)
Q Consensus 226 ~~~~~---------~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~ 259 (286)
+-+.. -.+-+|.||+|||||.|-+ |.++++....
T Consensus 679 F~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 679 FSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 54432 2578999999999999876 6666655443
No 88
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.91 E-value=4.8e-23 Score=177.01 Aligned_cols=209 Identities=19% Similarity=0.235 Sum_probs=144.4
Q ss_pred CcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecChhHHH---HHHHhc
Q 023157 32 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALE---ITRKFM 108 (286)
Q Consensus 32 ~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~---~~~~~~ 108 (286)
..|.|+|.+.+...-....+....+++||+||||++.+..+......+... ..++++||||+..... ......
T Consensus 123 ~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~----~~~LGLTATp~R~D~~~~~~l~~~~ 198 (442)
T COG1061 123 AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAA----YPRLGLTATPEREDGGRIGDLFDLI 198 (442)
T ss_pred CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcc----cceeeeccCceeecCCchhHHHHhc
Confidence 369999998887642112233346899999999998766544333333222 2299999998744311 111221
Q ss_pred CCCeEEEecCCcc----ccccceeEEEEc-------------------------------------cchhhHHHHHHHHH
Q 023157 109 NKPVRILVKRDEL----TLEGIKQFYVNV-------------------------------------EKEEWKLETLCDLY 147 (286)
Q Consensus 109 ~~~~~~~~~~~~~----~~~~i~~~~~~~-------------------------------------~~~~~~~~~l~~~~ 147 (286)
+ +..+.....+. ............ .....+...+..++
T Consensus 199 g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (442)
T COG1061 199 G-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLL 277 (442)
T ss_pred C-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHH
Confidence 1 12222111100 000011111111 00112344455555
Q ss_pred hhc-cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEE
Q 023157 148 ETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 226 (286)
Q Consensus 148 ~~~-~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~ 226 (286)
... .+.+++||+.+..++..++..+...+. +..+.+.++..+|..+++.|+.|+.++|+++.++.+|+|+|+++++|+
T Consensus 278 ~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~ 356 (442)
T COG1061 278 LKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII 356 (442)
T ss_pred HHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE
Confidence 544 467999999999999999999988877 889999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhhhcccccC
Q 023157 227 YDLPTQPENYLHRIGRSGRF 246 (286)
Q Consensus 227 ~~~~~s~~~~~Q~~GR~~R~ 246 (286)
..+..|...|.||+||+-|.
T Consensus 357 ~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 357 LRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred eCCCCcHHHHHHHhhhhccC
Confidence 99999999999999999993
No 89
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.2e-21 Score=154.73 Aligned_cols=240 Identities=16% Similarity=0.171 Sum_probs=165.0
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCcc
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 88 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 88 (286)
+..+..++|+..... ...++|+|.-+|++.... +|++||||++.+.-.........+.+......-
T Consensus 170 ~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~a-------FD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~ 235 (441)
T COG4098 170 NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQA-------FDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGA 235 (441)
T ss_pred cCCeeeEecCCchhc-------cccEEEEehHHHHHHHhh-------ccEEEEeccccccccCCHHHHHHHHHhhcccCc
Confidence 477888888755433 257999998888776443 689999999987644333344455555666777
Q ss_pred EEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHH------HHHHHHHhhc--cCcceEEEec
Q 023157 89 VGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL------ETLCDLYETL--AITQSVIFVN 160 (286)
Q Consensus 89 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------~~l~~~~~~~--~~~~~ivf~~ 160 (286)
.|.+|||++..+..-... ++...+.+..+-...+-..-.+.+..+-.+++ ..+...++.. .+.+++||++
T Consensus 236 ~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p 313 (441)
T COG4098 236 TIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFP 313 (441)
T ss_pred eEEEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEec
Confidence 999999999765553322 22223333333222222233334444433333 2455555533 5579999999
Q ss_pred chhhHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCC--CCcchh
Q 023157 161 TRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP--TQPENY 236 (286)
Q Consensus 161 ~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~--~s~~~~ 236 (286)
++..++.+++.|+.. ...++.+|+. ...|.+..+.|++|+.++||+|.++++|+.+|+++..|+-.-. .+.+.+
T Consensus 314 ~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaL 391 (441)
T COG4098 314 EIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESAL 391 (441)
T ss_pred chHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHH
Confidence 999999999999553 3456777874 4678999999999999999999999999999999998864433 578899
Q ss_pred hhhhcccccCCCc--ceEEEEeccCcHHHHHH
Q 023157 237 LHRIGRSGRFGRK--GVAINFVTRDDERMLFD 266 (286)
Q Consensus 237 ~Q~~GR~~R~~~~--g~~~~~~~~~~~~~~~~ 266 (286)
+|..||+||.-.. |.++.|=......+...
T Consensus 392 VQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A 423 (441)
T COG4098 392 VQIAGRVGRSLERPTGDVLFFHYGKSKAMKQA 423 (441)
T ss_pred HHHhhhccCCCcCCCCcEEEEeccchHHHHHH
Confidence 9999999997443 66665555555444443
No 90
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.88 E-value=2.6e-22 Score=180.07 Aligned_cols=226 Identities=15% Similarity=0.278 Sum_probs=168.2
Q ss_pred hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhc-cc-cHHHHHHHHHhCCcCccEEEEEeecChhHHHHHHH
Q 023157 29 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RG-FKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRK 106 (286)
Q Consensus 29 ~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 106 (286)
.....|-++|.+.|++.+.+++. ++.+++||+||+|+-.- -. ....+..++...+...++|.||||+..+ . ...
T Consensus 137 s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATld~~--r-fs~ 212 (845)
T COG1643 137 SPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAE--R-FSA 212 (845)
T ss_pred CCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecccCHH--H-HHH
Confidence 34578999999999999987664 77889999999997432 22 2245556666776679999999999854 2 334
Q ss_pred hcCCCeEEEecCCccccccceeEEEEccchhh-HHHH---HHHHHhhccCcceEEEecchhhHHHHHHHHhc----CCCe
Q 023157 107 FMNKPVRILVKRDELTLEGIKQFYVNVEKEEW-KLET---LCDLYETLAITQSVIFVNTRRKVDWLTDKMRS----RDHT 178 (286)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~---l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~----~~~~ 178 (286)
++++.-.+.+.....+ +..+|......+. .... ..........+.++||.+...+.+.+++.|.+ ....
T Consensus 213 ~f~~apvi~i~GR~fP---Vei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~ 289 (845)
T COG1643 213 YFGNAPVIEIEGRTYP---VEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLE 289 (845)
T ss_pred HcCCCCEEEecCCccc---eEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcE
Confidence 5554444444443332 2333322222222 2222 33333334568999999999999999999987 3578
Q ss_pred eEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccC------------------CCCcchhhhhh
Q 023157 179 VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PTQPENYLHRI 240 (286)
Q Consensus 179 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~------------------~~s~~~~~Q~~ 240 (286)
+..+||.++.+++.++++--..|+-+|++||++++.++.+|++..||.-|. |-|.++..||.
T Consensus 290 i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRa 369 (845)
T COG1643 290 ILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRA 369 (845)
T ss_pred EeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhc
Confidence 999999999999999988888887789999999999999999999998664 45778999999
Q ss_pred cccccCCCcceEEEEeccCcHH
Q 023157 241 GRSGRFGRKGVAINFVTRDDER 262 (286)
Q Consensus 241 GR~~R~~~~g~~~~~~~~~~~~ 262 (286)
||+||. .+|.||-+|+..+..
T Consensus 370 GRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 370 GRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred cccccC-CCceEEEecCHHHHH
Confidence 999997 789999999985433
No 91
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.88 E-value=1.6e-22 Score=173.67 Aligned_cols=236 Identities=17% Similarity=0.266 Sum_probs=171.5
Q ss_pred EEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEE
Q 023157 12 VHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGV 91 (286)
Q Consensus 12 ~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 91 (286)
|...+|+...+. ....+|+|.+.|.+++.++.--...+.-||+||+|-+-+...+-....-+-.+|++.+.++
T Consensus 199 VGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VF 271 (1041)
T KOG0948|consen 199 VGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVF 271 (1041)
T ss_pred cceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEE
Confidence 455566555443 5779999999999999887766777889999999988777767777777778899999999
Q ss_pred EEeecChhHHHHHHHhc---CCCeEEEecCCccccccceeEEEEcc---------ch----hhHH---------------
Q 023157 92 FSATMPPEALEITRKFM---NKPVRILVKRDELTLEGIKQFYVNVE---------KE----EWKL--------------- 140 (286)
Q Consensus 92 ~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~----~~~~--------------- 140 (286)
+|||+|.. .++..|.. .+|.++.... ..+..++|+.+..- .. +...
T Consensus 272 LSATiPNA-~qFAeWI~~ihkQPcHVVYTd--yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~ 348 (1041)
T KOG0948|consen 272 LSATIPNA-RQFAEWICHIHKQPCHVVYTD--YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDG 348 (1041)
T ss_pred EeccCCCH-HHHHHHHHHHhcCCceEEeec--CCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcc
Confidence 99999755 45555543 3455444333 34445566544311 10 0111
Q ss_pred ------------------------HHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCC--------------------
Q 023157 141 ------------------------ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD-------------------- 176 (286)
Q Consensus 141 ------------------------~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~-------------------- 176 (286)
..+..++ .....++|||+.++++|+.+|-.+.+..
T Consensus 349 ~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~-~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~ 427 (1041)
T KOG0948|consen 349 KKKANKKGRKGGTGGKGPGDSDIYKIVKMIM-ERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQ 427 (1041)
T ss_pred ccccccccccCCcCCCCCCcccHHHHHHHHH-hhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHh
Confidence 1111111 1233579999999999999998886532
Q ss_pred -------------------CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCC-------
Q 023157 177 -------------------HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP------- 230 (286)
Q Consensus 177 -------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~------- 230 (286)
-++.++|+|+=+--+.-+.-.|.+|-.++|+||..++.|+|+|.- .|++..+.
T Consensus 428 LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAk-TVvFT~~rKfDG~~f 506 (1041)
T KOG0948|consen 428 LSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAK-TVVFTAVRKFDGKKF 506 (1041)
T ss_pred cChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcce-eEEEeeccccCCcce
Confidence 348899999998888999999999999999999999999999874 45454432
Q ss_pred --CCcchhhhhhcccccCCCc--ceEEEEeccC
Q 023157 231 --TQPENYLHRIGRSGRFGRK--GVAINFVTRD 259 (286)
Q Consensus 231 --~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~ 259 (286)
-|.-+|+||.|||||.|.+ |.|+++++..
T Consensus 507 RwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 507 RWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred eeecccceEEecccccccCCCCCceEEEEecCc
Confidence 1556899999999999865 8888888875
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=5.7e-21 Score=170.65 Aligned_cols=256 Identities=20% Similarity=0.251 Sum_probs=181.5
Q ss_pred CcccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHH-HHHHhcCCC------CCCCccEEEEehhhHhh-ccc-
Q 023157 1 MRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQSL------RPDYIKMFVLDEADEML-SRG- 71 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l-~~~~~~~~~------~~~~~~~iIiDE~h~~~-~~~- 71 (286)
|+.+.+.+|+++..++|+.+..++...+ .++|+++||..+ +++++.+.. ....+.+.|+||++.++ +..
T Consensus 142 ~~~l~~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeAr 219 (830)
T PRK12904 142 MGPLYEFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEAR 219 (830)
T ss_pred HHHHHhhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCC
Confidence 3567788999999999999888777765 489999999999 888876542 35668999999999754 211
Q ss_pred --------------cHHHHHHHHHhCCc--------Cc------------------------------------------
Q 023157 72 --------------FKDQIYDIFQLLPA--------KV------------------------------------------ 87 (286)
Q Consensus 72 --------------~~~~~~~i~~~~~~--------~~------------------------------------------ 87 (286)
.+..+..+...+.. ..
T Consensus 220 tpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~ 299 (830)
T PRK12904 220 TPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHE 299 (830)
T ss_pred CceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHH
Confidence 11122222222210 01
Q ss_pred -------------------------------------------------------------------cEEEEEeecChhH
Q 023157 88 -------------------------------------------------------------------QVGVFSATMPPEA 100 (286)
Q Consensus 88 -------------------------------------------------------------------~~i~~SAT~~~~~ 100 (286)
++.+||+|.....
T Consensus 300 l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~ 379 (830)
T PRK12904 300 LFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEA 379 (830)
T ss_pred HHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHH
Confidence 4566666664433
Q ss_pred HHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhh--ccCcceEEEecchhhHHHHHHHHhcCCCe
Q 023157 101 LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHT 178 (286)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~ 178 (286)
.++..-+..+.+.++...+ ..+......+ ......|...+...+.. ..+.++||||+|+..++.+++.|...|++
T Consensus 380 ~E~~~iY~l~vv~IPtnkp-~~r~d~~d~i--~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~ 456 (830)
T PRK12904 380 EEFREIYNLDVVVIPTNRP-MIRIDHPDLI--YKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIP 456 (830)
T ss_pred HHHHHHhCCCEEEcCCCCC-eeeeeCCCeE--EECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCc
Confidence 3333333222222222111 1111111122 22333477777777754 57789999999999999999999999999
Q ss_pred eEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCC-------------------------------------
Q 023157 179 VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV------------------------------------- 221 (286)
Q Consensus 179 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~------------------------------------- 221 (286)
...+|++ +.+|...+..|..++..|+|||+++++|+|++--
T Consensus 457 ~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G 534 (830)
T PRK12904 457 HNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAG 534 (830)
T ss_pred eEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcC
Confidence 9999995 7788999999999999999999999999999753
Q ss_pred -cEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHH
Q 023157 222 -SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 263 (286)
Q Consensus 222 -~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 263 (286)
=+||-...|.|.+--.|..||+||.|.+|.+-.+++-.|.-.
T Consensus 535 GLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l~ 577 (830)
T PRK12904 535 GLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 577 (830)
T ss_pred CCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHHH
Confidence 167777789999999999999999999999888888776443
No 93
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.3e-21 Score=174.04 Aligned_cols=125 Identities=19% Similarity=0.245 Sum_probs=110.7
Q ss_pred hhHHHHHHHHHhh--ccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCcc
Q 023157 137 EWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 214 (286)
Q Consensus 137 ~~~~~~l~~~~~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~ 214 (286)
..|...+...+.. ..+.++||||+|+..++.+++.|.+.|+....+|+++...++..+...++.|. |+|||+++++
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGR 500 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGR 500 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccC
Confidence 3466677766643 37789999999999999999999999999999999999888888888877777 9999999999
Q ss_pred CCCCC---CCc-----EEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHH
Q 023157 215 GIDVQ---QVS-----LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 263 (286)
Q Consensus 215 Gidi~---~~~-----~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 263 (286)
|.|++ ++. +||.++.|.|.+.+.|+.||+||.|.+|.+..+++..|.-.
T Consensus 501 GtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l~ 557 (796)
T PRK12906 501 GTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM 557 (796)
T ss_pred CCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchHH
Confidence 99995 788 99999999999999999999999999999999998876443
No 94
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.88 E-value=6.1e-22 Score=174.60 Aligned_cols=258 Identities=18% Similarity=0.269 Sum_probs=173.4
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhc--CCCCCCCccEEEEehhhHhhccccHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR--QSLRPDYIKMFVLDEADEMLSRGFKDQIYDI 79 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~--~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i 79 (286)
..+...+|+++..+.|..+.....+. ..+.|||.|+-..++.. ..-.++.+++||+||.|.+.+.+.+..+..+
T Consensus 290 ~~~~~~~G~~ve~y~g~~~p~~~~k~----~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~ 365 (1008)
T KOG0950|consen 290 SPFSIDLGFPVEEYAGRFPPEKRRKR----ESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELL 365 (1008)
T ss_pred hhhccccCCcchhhcccCCCCCcccc----eeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHH
Confidence 45667789999999987776554433 58999999988765543 1224555799999999999998888777777
Q ss_pred HHhC-----CcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccc--cccceeEEEEccchhhHHHHHHH-------
Q 023157 80 FQLL-----PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELT--LEGIKQFYVNVEKEEWKLETLCD------- 145 (286)
Q Consensus 80 ~~~~-----~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~l~~------- 145 (286)
+.+. ....|+++||||++.. ..+..++.........++... ...+...++... .......+..
T Consensus 366 l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~-r~~~lr~ia~l~~~~~g 442 (1008)
T KOG0950|consen 366 LAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS-RNKVLREIANLYSSNLG 442 (1008)
T ss_pred HHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccch-hhHHHHHhhhhhhhhcc
Confidence 6554 2346799999999753 333333332111111111000 001111111111 1111111111
Q ss_pred ---------HHhh--ccCcceEEEecchhhHHHHHHHHhcC--------------------------------------C
Q 023157 146 ---------LYET--LAITQSVIFVNTRRKVDWLTDKMRSR--------------------------------------D 176 (286)
Q Consensus 146 ---------~~~~--~~~~~~ivf~~~~~~~~~l~~~l~~~--------------------------------------~ 176 (286)
+... .++.++||||++++.++.++..+... .
T Consensus 443 ~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~ 522 (1008)
T KOG0950|consen 443 DEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIP 522 (1008)
T ss_pred cCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheecc
Confidence 1110 13346999999999999888655321 1
Q ss_pred CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEc----cCCCCcchhhhhhcccccCCCc--c
Q 023157 177 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY----DLPTQPENYLHRIGRSGRFGRK--G 250 (286)
Q Consensus 177 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~----~~~~s~~~~~Q~~GR~~R~~~~--g 250 (286)
++++++|++++.++|..+...|+.|-..|++||+.+..|+|+|.-+.++-. ....+..+|.||+||+||.|-+ |
T Consensus 523 ~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~G 602 (1008)
T KOG0950|consen 523 YGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLG 602 (1008)
T ss_pred ccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCc
Confidence 569999999999999999999999999999999999999999987766531 2234778999999999999754 8
Q ss_pred eEEEEeccCcHHHHHH
Q 023157 251 VAINFVTRDDERMLFD 266 (286)
Q Consensus 251 ~~~~~~~~~~~~~~~~ 266 (286)
.+++.+...+......
T Consensus 603 dsiLI~k~~e~~~~~~ 618 (1008)
T KOG0950|consen 603 DSILIIKSSEKKRVRE 618 (1008)
T ss_pred ceEEEeeccchhHHHH
Confidence 8899988888766553
No 95
>PRK09694 helicase Cas3; Provisional
Probab=99.88 E-value=3.6e-21 Score=175.07 Aligned_cols=213 Identities=16% Similarity=0.188 Sum_probs=136.4
Q ss_pred CcEEEeCcHHHHHHHhcCC-CCCCCc----cEEEEehhhHhhccccHHHHHHHHHhC-CcCccEEEEEeecChhHHHHHH
Q 023157 32 VHVVVGTPGRVFDMLRRQS-LRPDYI----KMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSATMPPEALEITR 105 (286)
Q Consensus 32 ~~iii~Tp~~l~~~~~~~~-~~~~~~----~~iIiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~ 105 (286)
.+|+|||.++++......+ ..+..+ ++|||||+|.+... ....+..+++.. ....++|+||||+|......+.
T Consensus 411 api~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAyD~y-m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~ 489 (878)
T PRK09694 411 GQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAYDAY-MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLL 489 (878)
T ss_pred CCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhCCHH-HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHH
Confidence 6899999998885443321 111112 58999999986443 233444444433 2346799999999977665443
Q ss_pred HhcCCC--------eEEEecC-----Cccc--------cccceeEEEEc--cchhhHHHHHHHHHhh-ccCcceEEEecc
Q 023157 106 KFMNKP--------VRILVKR-----DELT--------LEGIKQFYVNV--EKEEWKLETLCDLYET-LAITQSVIFVNT 161 (286)
Q Consensus 106 ~~~~~~--------~~~~~~~-----~~~~--------~~~i~~~~~~~--~~~~~~~~~l~~~~~~-~~~~~~ivf~~~ 161 (286)
..+... +...... .... ........... .........+..+.+. ..+++++||||+
T Consensus 490 ~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NT 569 (878)
T PRK09694 490 DTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNL 569 (878)
T ss_pred HHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECC
Confidence 322211 0000000 0000 00000011111 1111122333444433 356789999999
Q ss_pred hhhHHHHHHHHhcCC---CeeEEecCCCCHHHHH----HHHHHh-hcCC---CcEEEEecCCccCCCCCCCcEEEEccCC
Q 023157 162 RRKVDWLTDKMRSRD---HTVSATHGDMDQNTRD----IIMREF-RSGS---SRVLITTDLLARGIDVQQVSLVINYDLP 230 (286)
Q Consensus 162 ~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~----~~~~~f-~~~~---~~vlv~T~~~~~Gidi~~~~~vi~~~~~ 230 (286)
++.|+.+++.|++.+ ..+..+|+.++..+|. ++++.| ++|+ ..|||||++++.|+|+ +++.+|....|
T Consensus 570 V~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP 648 (878)
T PRK09694 570 VDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP 648 (878)
T ss_pred HHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC
Confidence 999999999998764 5799999999999984 567777 5665 4799999999999999 68988887777
Q ss_pred CCcchhhhhhcccccCCC
Q 023157 231 TQPENYLHRIGRSGRFGR 248 (286)
Q Consensus 231 ~s~~~~~Q~~GR~~R~~~ 248 (286)
...++||+||++|.+.
T Consensus 649 --idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 649 --VDLLFQRLGRLHRHHR 664 (878)
T ss_pred --HHHHHHHHhccCCCCC
Confidence 6799999999999865
No 96
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.88 E-value=1.9e-21 Score=166.02 Aligned_cols=222 Identities=15% Similarity=0.285 Sum_probs=166.9
Q ss_pred CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhh--ccccHHHHHHHHHhCCcCccEEEEEeecChhHHHHHHHhc
Q 023157 31 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML--SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFM 108 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~--~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 108 (286)
...|.++|.++|++.+..++. ++..++||+||||+-. .+-....++++++.. +..++|.+|||+..+ ....++
T Consensus 140 ~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklIimSATlda~---kfS~yF 214 (674)
T KOG0922|consen 140 DTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLIIMSATLDAE---KFSEYF 214 (674)
T ss_pred ceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEEEEeeeecHH---HHHHHh
Confidence 478999999999998887664 6778999999999632 222334555555555 357899999999744 233455
Q ss_pred CCCeEEEecCCccccccceeEEEEccchhh---HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC----CC----
Q 023157 109 NKPVRILVKRDELTLEGIKQFYVNVEKEEW---KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR----DH---- 177 (286)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~----~~---- 177 (286)
.+...+.+..+..+ +..++...+..+. .+..+.++....+.+.++||....++.+.+++.|.+. +.
T Consensus 215 ~~a~i~~i~GR~fP---Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~ 291 (674)
T KOG0922|consen 215 NNAPILTIPGRTFP---VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE 291 (674)
T ss_pred cCCceEeecCCCCc---eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc
Confidence 55333333333222 3444444333332 3455666666667789999999999999999988764 11
Q ss_pred eeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccC------------------CCCcchhhhh
Q 023157 178 TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PTQPENYLHR 239 (286)
Q Consensus 178 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~------------------~~s~~~~~Q~ 239 (286)
-+..+||.++.+++.++.+.-..|.-+|++||++++..+.+|++..||.-|. |-|.++-.||
T Consensus 292 ~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QR 371 (674)
T KOG0922|consen 292 LILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQR 371 (674)
T ss_pred eeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhh
Confidence 2468999999999999999999999999999999999999999999998664 4578899999
Q ss_pred hcccccCCCcceEEEEeccCcH
Q 023157 240 IGRSGRFGRKGVAINFVTRDDE 261 (286)
Q Consensus 240 ~GR~~R~~~~g~~~~~~~~~~~ 261 (286)
.||+||. .+|+||.+|+..+.
T Consensus 372 aGRAGRt-~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 372 AGRAGRT-GPGKCYRLYTESAY 392 (674)
T ss_pred cccCCCC-CCceEEEeeeHHHH
Confidence 9999997 68999999998754
No 97
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.88 E-value=2.2e-21 Score=173.86 Aligned_cols=144 Identities=26% Similarity=0.356 Sum_probs=125.4
Q ss_pred HHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCC
Q 023157 139 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 216 (286)
Q Consensus 139 ~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 216 (286)
++..+...+... .+.+++|||++...++.+++.|.+.|+.+..+|++++..+|..+++.|+.|+..|+|||+.+++|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 344444444332 467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEccC-----CCCcchhhhhhcccccCCCcceEEEEecc---------CcHHHHHHHHHHhchhcccCCcch
Q 023157 217 DVQQVSLVINYDL-----PTQPENYLHRIGRSGRFGRKGVAINFVTR---------DDERMLFDIQKFYNVVIEELPSNV 282 (286)
Q Consensus 217 di~~~~~vi~~~~-----~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l 282 (286)
|+|++++|++++. |.+..+|+||+||+||. ..|.++++++. .+....+++++.++.....+|...
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 9999999998875 78999999999999996 78999999984 466777788888999888888765
Q ss_pred h
Q 023157 283 A 283 (286)
Q Consensus 283 ~ 283 (286)
.
T Consensus 590 ~ 590 (652)
T PRK05298 590 K 590 (652)
T ss_pred H
Confidence 4
No 98
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.87 E-value=1.1e-20 Score=168.40 Aligned_cols=129 Identities=25% Similarity=0.364 Sum_probs=112.6
Q ss_pred HHHHHHHHHhh--ccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCC
Q 023157 139 KLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 216 (286)
Q Consensus 139 ~~~~l~~~~~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 216 (286)
++..+...++. ..+.+++|||+++..++.+++.|.+.|+.+..+|++++..+|.++++.|+.|+..|+|||+.+++|+
T Consensus 427 qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGf 506 (655)
T TIGR00631 427 QVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGL 506 (655)
T ss_pred hHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCe
Confidence 44444444433 2567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEcc-----CCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHH
Q 023157 217 DVQQVSLVINYD-----LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 268 (286)
Q Consensus 217 di~~~~~vi~~~-----~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 268 (286)
|+|++++|++++ .|.+..+|+||+||+||. .+|.++++++..+......+.
T Consensus 507 DiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 507 DLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred eeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHH
Confidence 999999999988 689999999999999997 689999999987655444443
No 99
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=1.7e-20 Score=167.94 Aligned_cols=123 Identities=17% Similarity=0.256 Sum_probs=105.6
Q ss_pred HHHHHHHHHh--hccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCC
Q 023157 139 KLETLCDLYE--TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 216 (286)
Q Consensus 139 ~~~~l~~~~~--~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 216 (286)
|...+...+. ...+.++||||+|...++.+++.|.+.|+...++|+++...++..+.+.|+.|. |+|||+++++|+
T Consensus 429 k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGt 506 (896)
T PRK13104 429 KFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGT 506 (896)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCc
Confidence 5555555443 346789999999999999999999999999999999999999999999999995 999999999999
Q ss_pred CCCCC--------------------------------------cEEEEccCCCCcchhhhhhcccccCCCcceEEEEecc
Q 023157 217 DVQQV--------------------------------------SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR 258 (286)
Q Consensus 217 di~~~--------------------------------------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 258 (286)
|+.-- =+||-...+.|.+--.|..||+||.|.+|..-.+++-
T Consensus 507 DI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSl 586 (896)
T PRK13104 507 DIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 586 (896)
T ss_pred ceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEc
Confidence 99632 1666677888999999999999999999998888887
Q ss_pred CcHHH
Q 023157 259 DDERM 263 (286)
Q Consensus 259 ~~~~~ 263 (286)
.|.-.
T Consensus 587 eD~l~ 591 (896)
T PRK13104 587 EDNLM 591 (896)
T ss_pred CcHHH
Confidence 66443
No 100
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.86 E-value=8.5e-21 Score=137.39 Aligned_cols=118 Identities=44% Similarity=0.723 Sum_probs=108.8
Q ss_pred hHHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccC
Q 023157 138 WKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 215 (286)
Q Consensus 138 ~~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 215 (286)
.+...+..++... +++++|||+++...++.+++.|.+.+..+..+|++++..+|..+.+.|+++...++++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 4777777777755 47899999999999999999999888899999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEE
Q 023157 216 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINF 255 (286)
Q Consensus 216 idi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~ 255 (286)
+|+|.+++|+++++|++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999988887653
No 101
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.85 E-value=4.1e-20 Score=172.71 Aligned_cols=214 Identities=20% Similarity=0.283 Sum_probs=137.5
Q ss_pred CCcEEEeCcHHHHHHHhcC-----CCCCCCccEEEEehhhHhhcc---------------ccHHHHHHHHHhCCcCccEE
Q 023157 31 GVHVVVGTPGRVFDMLRRQ-----SLRPDYIKMFVLDEADEMLSR---------------GFKDQIYDIFQLLPAKVQVG 90 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~-----~~~~~~~~~iIiDE~h~~~~~---------------~~~~~~~~i~~~~~~~~~~i 90 (286)
...|+|+|.+.+.+.+... ...+..+++||+||||+-... .+...+..++.++. ...|
T Consensus 511 ~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd--A~~I 588 (1123)
T PRK11448 511 ETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD--AVKI 588 (1123)
T ss_pred CCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC--ccEE
Confidence 5789999999987765321 135677899999999984210 11355667776653 5789
Q ss_pred EEEeecChhHHHHHH--------------HhcC---CCeEEEecCCc--cc---c---ccce----eE-EEEccch----
Q 023157 91 VFSATMPPEALEITR--------------KFMN---KPVRILVKRDE--LT---L---EGIK----QF-YVNVEKE---- 136 (286)
Q Consensus 91 ~~SAT~~~~~~~~~~--------------~~~~---~~~~~~~~~~~--~~---~---~~i~----~~-~~~~~~~---- 136 (286)
+|||||......... .++. .|..+...-.. .. . ..+. .. ....+..
T Consensus 589 GLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~ 668 (1123)
T PRK11448 589 GLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFE 668 (1123)
T ss_pred EEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhh
Confidence 999999754433211 1110 01111110000 00 0 0000 00 0000000
Q ss_pred ----hh----------HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC------C---CeeEEecCCCCHHHHHH
Q 023157 137 ----EW----------KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR------D---HTVSATHGDMDQNTRDI 193 (286)
Q Consensus 137 ----~~----------~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~------~---~~~~~~~~~~~~~~r~~ 193 (286)
+. ....+.+.+.....+|+||||.++.+|+.+++.|.+. + ..+..++|+.+ ++..
T Consensus 669 ~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~ 746 (1123)
T PRK11448 669 VEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQ 746 (1123)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHH
Confidence 00 0111222222234479999999999999998887652 1 24567888875 4578
Q ss_pred HHHHhhcCCC-cEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCC
Q 023157 194 IMREFRSGSS-RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 248 (286)
Q Consensus 194 ~~~~f~~~~~-~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 248 (286)
+++.|++++. .|+|+++++.+|+|+|.+.+||++.++.|...|.||+||+.|...
T Consensus 747 li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 747 LIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred HHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 9999998876 689999999999999999999999999999999999999999743
No 102
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.4e-20 Score=156.71 Aligned_cols=175 Identities=23% Similarity=0.265 Sum_probs=130.6
Q ss_pred CccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhh-ccCcceEEEecchhh
Q 023157 86 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET-LAITQSVIFVNTRRK 164 (286)
Q Consensus 86 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ivf~~~~~~ 164 (286)
..|++++||||.+...+... +..+...+.+....-+.+.. -+...+.-+.+.++-+. ..+.+++|-+-|++.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP~iev----Rp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDPEIEV----RPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCCceee----ecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 36899999999864333221 12222223332222222221 12222122333333321 245799999999999
Q ss_pred HHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccC-----CCCcchhhhh
Q 023157 165 VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-----PTQPENYLHR 239 (286)
Q Consensus 165 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~-----~~s~~~~~Q~ 239 (286)
|+.+.++|.+.|+.+.++|++...-+|.+++..++.|.++|||+-+.+.+|+|+|.|..|.++|+ ..|..+++|-
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999886 4689999999
Q ss_pred hcccccCCCcceEEEEeccCcHHHHHHHH
Q 023157 240 IGRSGRFGRKGVAINFVTRDDERMLFDIQ 268 (286)
Q Consensus 240 ~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 268 (286)
+||++|. .+|+|+++.+.-..++-..++
T Consensus 539 IGRAARN-~~GkvIlYAD~iT~sM~~Ai~ 566 (663)
T COG0556 539 IGRAARN-VNGKVILYADKITDSMQKAID 566 (663)
T ss_pred HHHHhhc-cCCeEEEEchhhhHHHHHHHH
Confidence 9999996 679999999886655555443
No 103
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.84 E-value=3.7e-19 Score=163.73 Aligned_cols=120 Identities=25% Similarity=0.325 Sum_probs=102.2
Q ss_pred HHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCC---CcEEEEecCCcc
Q 023157 140 LETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS---SRVLITTDLLAR 214 (286)
Q Consensus 140 ~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vlv~T~~~~~ 214 (286)
+..+..++... .+.++|||+........+.+.|...++....++|+++..+|..+++.|+... .-+|++|.+++.
T Consensus 473 l~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGl 552 (1033)
T PLN03142 473 MVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGL 552 (1033)
T ss_pred HHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecccccc
Confidence 33444444432 4579999999999999999999999999999999999999999999997532 357899999999
Q ss_pred CCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcce--EEEEeccC
Q 023157 215 GIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV--AINFVTRD 259 (286)
Q Consensus 215 Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~ 259 (286)
|+|+..+++||++|++|++....|+.||+.|.|+... +|.++...
T Consensus 553 GINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 553 GINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred CCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999998744 55566554
No 104
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.2e-19 Score=164.37 Aligned_cols=239 Identities=21% Similarity=0.255 Sum_probs=172.4
Q ss_pred EEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEE
Q 023157 12 VHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGV 91 (286)
Q Consensus 12 ~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 91 (286)
+..++|+...+. +..++|+|.+.|.+++.++.-....+..||+||+|.+.+...+.....++-.+|+..++++
T Consensus 193 vGL~TGDv~IN~-------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~ 265 (1041)
T COG4581 193 VGLMTGDVSINP-------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVF 265 (1041)
T ss_pred ccceecceeeCC-------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEE
Confidence 566777766654 5889999999999999988788888999999999999888888899999999999999999
Q ss_pred EEeecChhHHHHHHHhcC-CCeEEEecCCccccccceeEEEEc-------cchhh-------------------------
Q 023157 92 FSATMPPEALEITRKFMN-KPVRILVKRDELTLEGIKQFYVNV-------EKEEW------------------------- 138 (286)
Q Consensus 92 ~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~------------------------- 138 (286)
+|||.+... ++..|+.. ....+.+...+..+..+.++++.- +....
T Consensus 266 LSATv~N~~-EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~ 344 (1041)
T COG4581 266 LSATVPNAE-EFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDD 344 (1041)
T ss_pred EeCCCCCHH-HHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCc
Confidence 999997653 44444431 122222222223333344433321 00000
Q ss_pred ---------------------HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC----------------------
Q 023157 139 ---------------------KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR---------------------- 175 (286)
Q Consensus 139 ---------------------~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~---------------------- 175 (286)
....+...+...+..++|+|+.++..|+..+..+...
T Consensus 345 ~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~ 424 (1041)
T COG4581 345 GDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGD 424 (1041)
T ss_pred cccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhh
Confidence 0011222233334458999999999999998877421
Q ss_pred ------C-------------CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccC-------
Q 023157 176 ------D-------------HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------- 229 (286)
Q Consensus 176 ------~-------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~------- 229 (286)
+ -.++++|+++=+..+..+.+.|..|-.+|++||.+++.|+|+|.= .|++...
T Consensus 425 L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPar-tvv~~~l~K~dG~~ 503 (1041)
T COG4581 425 LAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPAR-TVVFTSLSKFDGNG 503 (1041)
T ss_pred cChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccc-ceeeeeeEEecCCc
Confidence 1 136689999999999999999999999999999999999999874 4444443
Q ss_pred --CCCcchhhhhhcccccCCCc--ceEEEEeccC
Q 023157 230 --PTQPENYLHRIGRSGRFGRK--GVAINFVTRD 259 (286)
Q Consensus 230 --~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~ 259 (286)
.-++.+|.|+.||+||.|.+ |.+++...+.
T Consensus 504 ~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 504 HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred eeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 34788999999999999876 7776664443
No 105
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.82 E-value=2.1e-20 Score=122.42 Aligned_cols=78 Identities=47% Similarity=0.814 Sum_probs=74.9
Q ss_pred HHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCC
Q 023157 170 DKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG 247 (286)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 247 (286)
+.|+..++.+..+||+++..+|..+++.|++++..|||||+++++|+|+|++++|+++++|+|..+|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 357788999999999999999999999999999999999999999999999999999999999999999999999975
No 106
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.82 E-value=2.2e-19 Score=163.33 Aligned_cols=228 Identities=19% Similarity=0.277 Sum_probs=147.9
Q ss_pred CcEEEeCcHHHHHHHhc-CCCC-C--CCccEEEEehhhHhhccccHHHHHHHHHh-CCcCccEEEEEeecChhHHHHHHH
Q 023157 32 VHVVVGTPGRVFDMLRR-QSLR-P--DYIKMFVLDEADEMLSRGFKDQIYDIFQL-LPAKVQVGVFSATMPPEALEITRK 106 (286)
Q Consensus 32 ~~iii~Tp~~l~~~~~~-~~~~-~--~~~~~iIiDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~~~~~~~ 106 (286)
..+.++||......... .... + -..+++|+||+|.+........+..+... .....++++||||+|+...+.+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~ 390 (733)
T COG1203 311 LALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKK 390 (733)
T ss_pred ccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHH
Confidence 45566666555442221 1111 0 11379999999988776322333333222 223678999999999988888877
Q ss_pred hcCCCeEEEecCCc---cccccc-eeEEEEccchhhHHHHHHHHH-hhccCcceEEEecchhhHHHHHHHHhcCCCeeEE
Q 023157 107 FMNKPVRILVKRDE---LTLEGI-KQFYVNVEKEEWKLETLCDLY-ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSA 181 (286)
Q Consensus 107 ~~~~~~~~~~~~~~---~~~~~i-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~ 181 (286)
.............. .....+ +.......... ......... .-..+.+++|.+||+..|.++++.|+..+..+..
T Consensus 391 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~L 469 (733)
T COG1203 391 ALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGP-QEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLL 469 (733)
T ss_pred HHhcccceeccccccccccccccccccchhhhhhh-hHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEE
Confidence 76655433332110 000000 11001111110 001111111 2235679999999999999999999998878999
Q ss_pred ecCCCCHHHHHHHHHHhh----cCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCC--CcceEEEE
Q 023157 182 THGDMDQNTRDIIMREFR----SGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG--RKGVAINF 255 (286)
Q Consensus 182 ~~~~~~~~~r~~~~~~f~----~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~--~~g~~~~~ 255 (286)
+|+.+...+|.+.++.+. .+...|+|||++++.|+|+ +.+.+|-==+| ..+++||+||++|.| .+|.++++
T Consensus 470 lHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 470 LHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLITELAP--IDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred EecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeeecCCC--HHHHHHHHHHHhhcccccCCceeEe
Confidence 999999999998888654 4678899999999999999 57777654444 789999999999998 56888877
Q ss_pred eccCcHHH
Q 023157 256 VTRDDERM 263 (286)
Q Consensus 256 ~~~~~~~~ 263 (286)
........
T Consensus 547 ~~~~~~~~ 554 (733)
T COG1203 547 NDEERGPY 554 (733)
T ss_pred ecccCCCc
Confidence 76654333
No 107
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=8.6e-19 Score=156.78 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=105.3
Q ss_pred HHHHHHHHHh--hccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCC
Q 023157 139 KLETLCDLYE--TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 216 (286)
Q Consensus 139 ~~~~l~~~~~--~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 216 (286)
|...+..-+. ...+.++||||.|...++.++..|...++....+|++.+..++..+.+.|+.|. |+|||+++++|.
T Consensus 434 K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGT 511 (908)
T PRK13107 434 KYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGT 511 (908)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCc
Confidence 4444444443 236779999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCCC-------------------------------------cEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccC
Q 023157 217 DVQQV-------------------------------------SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 217 di~~~-------------------------------------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 259 (286)
|+.-- =+||-...+.|.+-=.|..||+||.|.+|..-.+++-.
T Consensus 512 DIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlE 591 (908)
T PRK13107 512 DIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSME 591 (908)
T ss_pred ceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeC
Confidence 99732 16777788999999999999999999999988888877
Q ss_pred cHH
Q 023157 260 DER 262 (286)
Q Consensus 260 ~~~ 262 (286)
|.-
T Consensus 592 D~L 594 (908)
T PRK13107 592 DSL 594 (908)
T ss_pred cHH
Confidence 653
No 108
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1.8e-18 Score=147.34 Aligned_cols=220 Identities=15% Similarity=0.270 Sum_probs=160.6
Q ss_pred CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhh--ccccHHHHHHHHHhCCcCccEEEEEeecChhHHHHHHHhc
Q 023157 31 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML--SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFM 108 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~--~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 108 (286)
..-+-++|.++|++-+...+ ++.+.++|||||||.-- ..-+-..+..|++.. +..+++.+|||++.+ .+. .++
T Consensus 355 kTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~R-pdLKllIsSAT~DAe--kFS-~fF 429 (902)
T KOG0923|consen 355 KTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARFR-PDLKLLISSATMDAE--KFS-AFF 429 (902)
T ss_pred ceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC-CcceEEeeccccCHH--HHH-Hhc
Confidence 35688999999999887654 56778999999999632 111234555555555 588899999999744 333 344
Q ss_pred CCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHH---hhccCcceEEEecchhhHHHHHHHHhcC---------C
Q 023157 109 NKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY---ETLAITQSVIFVNTRRKVDWLTDKMRSR---------D 176 (286)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~ivf~~~~~~~~~l~~~l~~~---------~ 176 (286)
.+.-...+... . -.+..++...+..+..-.++..++ ...+.+.+|||.......+...+.|.+. .
T Consensus 430 DdapIF~iPGR-R--yPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~e 506 (902)
T KOG0923|consen 430 DDAPIFRIPGR-R--YPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRE 506 (902)
T ss_pred cCCcEEeccCc-c--cceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccce
Confidence 43322222222 1 234555555555544434443333 3446789999999988887777766542 3
Q ss_pred CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccC------------------CCCcchhhh
Q 023157 177 HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PTQPENYLH 238 (286)
Q Consensus 177 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~------------------~~s~~~~~Q 238 (286)
+-+..+|+.+|.+.+..+++--..|-.+|++||++++..+.|+++..||.-|+ |.|.++-.|
T Consensus 507 liv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~Q 586 (902)
T KOG0923|consen 507 LIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQ 586 (902)
T ss_pred EEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhh
Confidence 56889999999999999999989999999999999999999999999997553 567889999
Q ss_pred hhcccccCCCcceEEEEeccC
Q 023157 239 RIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 239 ~~GR~~R~~~~g~~~~~~~~~ 259 (286)
|.||+||. .+|.||.+|+.-
T Consensus 587 RaGRAGRt-gPGKCfRLYt~~ 606 (902)
T KOG0923|consen 587 RAGRAGRT-GPGKCFRLYTAW 606 (902)
T ss_pred hccccCCC-CCCceEEeechh
Confidence 99999997 689999999864
No 109
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=2e-18 Score=155.26 Aligned_cols=171 Identities=17% Similarity=0.215 Sum_probs=131.4
Q ss_pred ccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhc--cCcceEEEecchhh
Q 023157 87 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRK 164 (286)
Q Consensus 87 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivf~~~~~~ 164 (286)
.++-+||+|...+..++..-|..+.+.+....+ ..+......++ .....|...+...+... .+.++||||+|+..
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY~L~Vv~IPTnrP-~~R~D~~d~vy--~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~ 610 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIYKLDVVVIPTNKP-IVRKDMDDLVY--KTRREKYNAIVLKVEELQKKGQPVLVGTASVEV 610 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHhCCcEEECCCCCC-cceecCCCeEe--cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHH
Confidence 368999999976666655444433333322222 22222222222 33334777777777543 67899999999999
Q ss_pred HHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCC---Cc-----EEEEccCCCCcchh
Q 023157 165 VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ---VS-----LVINYDLPTQPENY 236 (286)
Q Consensus 165 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~---~~-----~vi~~~~~~s~~~~ 236 (286)
++.+++.|...++....+|+ .+.+|...+..|..+...|+|||+++++|+|++- +. +||.+..|.|.+.|
T Consensus 611 sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid 688 (1025)
T PRK12900 611 SETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRID 688 (1025)
T ss_pred HHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHH
Confidence 99999999999999999997 5778899999999999999999999999999993 43 33777889999999
Q ss_pred hhhhcccccCCCcceEEEEeccCcHH
Q 023157 237 LHRIGRSGRFGRKGVAINFVTRDDER 262 (286)
Q Consensus 237 ~Q~~GR~~R~~~~g~~~~~~~~~~~~ 262 (286)
.|+.||+||.|.+|.+..+++..|.-
T Consensus 689 ~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 689 RQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred HHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999999999999999999887654
No 110
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.79 E-value=1.1e-17 Score=144.84 Aligned_cols=121 Identities=25% Similarity=0.324 Sum_probs=104.3
Q ss_pred HHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCC---CcEEEEecCCc
Q 023157 139 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS---SRVLITTDLLA 213 (286)
Q Consensus 139 ~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vlv~T~~~~ 213 (286)
|+..+..++... .|.+|+||..-.....-+-.++.-+++..+.+.|.++.++|...++.|+... .-.|++|.+++
T Consensus 472 Km~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGG 551 (971)
T KOG0385|consen 472 KMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGG 551 (971)
T ss_pred ceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccc
Confidence 455566666543 6789999999989888888888888999999999999999999999998543 45789999999
Q ss_pred cCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCc--ceEEEEeccC
Q 023157 214 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRD 259 (286)
Q Consensus 214 ~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~ 259 (286)
.|+|+..++.||+||..|++..-.|...||+|.|+. ..||.+++..
T Consensus 552 LGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 552 LGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred cccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 999999999999999999999999999999999876 4566666665
No 111
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=1.7e-18 Score=150.33 Aligned_cols=241 Identities=17% Similarity=0.241 Sum_probs=171.0
Q ss_pred CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhcc-----ccHHHHHHHHHhCCc------CccEEEEEeecChh
Q 023157 31 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-----GFKDQIYDIFQLLPA------KVQVGVFSATMPPE 99 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-----~~~~~~~~i~~~~~~------~~~~i~~SAT~~~~ 99 (286)
...|-++|.+.|++-+.+.. .+...+.||+||||.-.-. |....+..+...+.+ +.++|.||||+.-.
T Consensus 349 ~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVs 427 (1172)
T KOG0926|consen 349 DTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVS 427 (1172)
T ss_pred CceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEec
Confidence 57899999999999888754 4666799999999974322 222444455555444 67899999998654
Q ss_pred HHHHHHHhcC-CCeEEEecCCccccccceeEEEEcc---chhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC
Q 023157 100 ALEITRKFMN-KPVRILVKRDELTLEGIKQFYVNVE---KEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR 175 (286)
Q Consensus 100 ~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~ 175 (286)
....-+.++. .|-.+.+..+..+ +..++.... .........+.+.+..+.+.++||+..-.++..+++.|++.
T Consensus 428 DFtenk~LFpi~pPlikVdARQfP---VsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 428 DFTENKRLFPIPPPLIKVDARQFP---VSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred ccccCceecCCCCceeeeecccCc---eEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhh
Confidence 4332233332 2333333333222 122222211 22235677888888999999999999999999999988653
Q ss_pred C-------------------------------------------------------------------------------
Q 023157 176 D------------------------------------------------------------------------------- 176 (286)
Q Consensus 176 ~------------------------------------------------------------------------------- 176 (286)
.
T Consensus 505 ~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~ 584 (1172)
T KOG0926|consen 505 FPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEK 584 (1172)
T ss_pred CccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCccc
Confidence 0
Q ss_pred --------------------CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCC------
Q 023157 177 --------------------HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP------ 230 (286)
Q Consensus 177 --------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~------ 230 (286)
..+..+++-++.+.+.++++.-..|..-++|||++++..+.||++..||..|..
T Consensus 585 d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd 664 (1172)
T KOG0926|consen 585 DESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYD 664 (1172)
T ss_pred chhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccc
Confidence 127778888899999999999889999999999999999999999999987743
Q ss_pred ------------CCcchhhhhhcccccCCCcceEEEEeccCcHHHHH-HHHHHhchhcccCC
Q 023157 231 ------------TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLF-DIQKFYNVVIEELP 279 (286)
Q Consensus 231 ------------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 279 (286)
-|..+--||+||+||. .+|.||.+|+.. .+. .++++...++...|
T Consensus 665 ~~TGV~~FeV~wiSkASadQRAGRAGRt-gpGHcYRLYSSA---Vf~~~Fe~fS~PEIlk~P 722 (1172)
T KOG0926|consen 665 SKTGVSSFEVDWISKASADQRAGRAGRT-GPGHCYRLYSSA---VFSNDFEEFSLPEILKKP 722 (1172)
T ss_pred cccCceeEEEEeeeccccchhccccCCC-CCCceeehhhhH---HhhcchhhhccHHHhhCc
Confidence 1556678999999998 579999999886 332 44555444444444
No 112
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.77 E-value=1.4e-17 Score=147.87 Aligned_cols=258 Identities=19% Similarity=0.247 Sum_probs=169.0
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccc-----c
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-----F 72 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-----~ 72 (286)
++|...+|.++..+|++.+..+....|. ++..|+|+|-..+ +.++.++++||+||-|.-.... +
T Consensus 263 ~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prY 335 (730)
T COG1198 263 ARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRY 335 (730)
T ss_pred HHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCc
Confidence 4566778999999999999877766553 4899999995443 3578889999999999644221 2
Q ss_pred HHHHHHHHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHH-----HHHHHHH
Q 023157 73 KDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKL-----ETLCDLY 147 (286)
Q Consensus 73 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~l~~~~ 147 (286)
...-..+++....++++++-||||+-+....... +....+....+.............+..+.... ..+.+.+
T Consensus 336 hARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i 413 (730)
T COG1198 336 HARDVAVLRAKKENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAI 413 (730)
T ss_pred CHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHH
Confidence 2333344444446888999999998665554422 22223333332221111122222222221111 2233333
Q ss_pred h--hccCcceEEEecchhhHHHH---------------------------------------------------------
Q 023157 148 E--TLAITQSVIFVNTRRKVDWL--------------------------------------------------------- 168 (286)
Q Consensus 148 ~--~~~~~~~ivf~~~~~~~~~l--------------------------------------------------------- 168 (286)
+ ...+.++|+|.|++..+-.+
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccH
Confidence 2 22566889998887755333
Q ss_pred ---HHHHhcC--CCeeEEecCCCCH--HHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCC----------
Q 023157 169 ---TDKMRSR--DHTVSATHGDMDQ--NTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT---------- 231 (286)
Q Consensus 169 ---~~~l~~~--~~~~~~~~~~~~~--~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~---------- 231 (286)
.+.|++. +..+..+.++... ..-...+..|.+|+.+|||+|+++..|.|+|+++.|.+++.-.
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~ 573 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRAS 573 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchH
Confidence 2222221 2346666666543 3456789999999999999999999999999999998877531
Q ss_pred --CcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHH
Q 023157 232 --QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 268 (286)
Q Consensus 232 --s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 268 (286)
....+.|..||+||.+.+|.+++.+...+...+..+.
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHH
Confidence 2456899999999998999999999888877666654
No 113
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.74 E-value=3.6e-17 Score=147.06 Aligned_cols=244 Identities=16% Similarity=0.244 Sum_probs=164.9
Q ss_pred CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhc-cccHHHHHHHHHhCCcCccEEEEEeecChhHHHHHHHhcC
Q 023157 31 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMN 109 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 109 (286)
...+.+||.+.|++.+..+ -.+..+..||+||+|.-.- ..+.-.+.+.+....+..++|+||||...+.. ..+++
T Consensus 264 ~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~f---s~YF~ 339 (924)
T KOG0920|consen 264 ETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAELF---SDYFG 339 (924)
T ss_pred ceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchHHH---HHHhC
Confidence 4789999999999998773 3567789999999997542 23444444444444478999999999974432 23333
Q ss_pred CCeEEEecCCcccc----------------ccceeEE-----------EEccchhhHHHH----HHHHHhhccCcceEEE
Q 023157 110 KPVRILVKRDELTL----------------EGIKQFY-----------VNVEKEEWKLET----LCDLYETLAITQSVIF 158 (286)
Q Consensus 110 ~~~~~~~~~~~~~~----------------~~i~~~~-----------~~~~~~~~~~~~----l~~~~~~~~~~~~ivf 158 (286)
....+.+.....+. ....+.. ..+-..+-.... +..+......+.+|||
T Consensus 340 ~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVF 419 (924)
T KOG0920|consen 340 GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVF 419 (924)
T ss_pred CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEE
Confidence 33333332221100 0000000 000000012222 3333334456789999
Q ss_pred ecchhhHHHHHHHHhcC-------CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCC-
Q 023157 159 VNTRRKVDWLTDKMRSR-------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP- 230 (286)
Q Consensus 159 ~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~- 230 (286)
.+...+...+++.|... ..-+..+|+.++..++..+......|..+|+++|++++.+|.|+++-+||..+..
T Consensus 420 LPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~K 499 (924)
T KOG0920|consen 420 LPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVK 499 (924)
T ss_pred cCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeee
Confidence 99999999999999642 2567899999999999999999999999999999999999999999999986632
Q ss_pred -----------------CCcchhhhhhcccccCCCcceEEEEeccCcHHHHH---HHHHHhchhcccCC
Q 023157 231 -----------------TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLF---DIQKFYNVVIEELP 279 (286)
Q Consensus 231 -----------------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 279 (286)
-|...-.||.||+||. .+|.||-+++......+. .+-+.++.+.+++.
T Consensus 500 e~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~ 567 (924)
T KOG0920|consen 500 EKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELC 567 (924)
T ss_pred eeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhhcccccCChHHHhChHHHhh
Confidence 2567889999999997 889999999886433322 23344444444443
No 114
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=1.9e-16 Score=131.46 Aligned_cols=229 Identities=18% Similarity=0.172 Sum_probs=156.7
Q ss_pred CCCcEEEeCcHHHHHHHhc--------CCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecChhHH
Q 023157 30 AGVHVVVGTPGRVFDMLRR--------QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEAL 101 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~--------~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~ 101 (286)
.++.|+|+|..++.+--++ ..+.-..++++++||+|.+....|+..+.-+.... .+++|||+-.+..
T Consensus 389 ~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc-----KLGLTATLvREDd 463 (776)
T KOG1123|consen 389 SGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC-----KLGLTATLVREDD 463 (776)
T ss_pred CCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHh-----hccceeEEeeccc
Confidence 4789999999777432211 11233457999999999988888887777776665 4999999854322
Q ss_pred HHHH--------------------HhcCCCeEEEecCCcc--------ccccceeEEEEccchhhHHHHHHHHHhhc--c
Q 023157 102 EITR--------------------KFMNKPVRILVKRDEL--------TLEGIKQFYVNVEKEEWKLETLCDLYETL--A 151 (286)
Q Consensus 102 ~~~~--------------------~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~~~~~~l~~~~~~~--~ 151 (286)
.+.. .+..+....++..+-. ...........+.+.. |.....-+++.+ .
T Consensus 464 KI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~-KFraCqfLI~~HE~R 542 (776)
T KOG1123|consen 464 KITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPN-KFRACQFLIKFHERR 542 (776)
T ss_pred cccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcc-hhHHHHHHHHHHHhc
Confidence 2111 0111111111111100 0011112222222222 555555555433 6
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhh-cCCCcEEEEecCCccCCCCCCCcEEEEccCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR-SGSSRVLITTDLLARGIDVQQVSLVINYDLP 230 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~ 230 (286)
+.|+|||..+......++-.| +--.++|.+++.+|.+|++.|. +.+++.++.+.++...+|+|.++++|++...
T Consensus 543 gDKiIVFsDnvfALk~YAikl-----~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH 617 (776)
T KOG1123|consen 543 GDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSH 617 (776)
T ss_pred CCeEEEEeccHHHHHHHHHHc-----CCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccc
Confidence 789999999988888888777 4467899999999999999997 4568899999999999999999999998876
Q ss_pred -CCcchhhhhhcccccCCC------cceEEEEeccCcHHHHHHHHH
Q 023157 231 -TQPENYLHRIGRSGRFGR------KGVAINFVTRDDERMLFDIQK 269 (286)
Q Consensus 231 -~s~~~~~Q~~GR~~R~~~------~g~~~~~~~~~~~~~~~~~~~ 269 (286)
.|.++-.||+||..|..+ +++.|.+++.+..+++..-++
T Consensus 618 ~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKR 663 (776)
T KOG1123|consen 618 GGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKR 663 (776)
T ss_pred ccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhh
Confidence 478899999999999632 256788889988887776543
No 115
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.72 E-value=1.9e-17 Score=109.48 Aligned_cols=81 Identities=41% Similarity=0.749 Sum_probs=76.7
Q ss_pred HHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccC
Q 023157 167 WLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 246 (286)
Q Consensus 167 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 246 (286)
.+++.|+..++.+..+||+++.++|..+++.|++++..++++|+++++|+|+|.+++|+++++|++..+|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46677888889999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 023157 247 G 247 (286)
Q Consensus 247 ~ 247 (286)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 4
No 116
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=2.6e-16 Score=134.89 Aligned_cols=220 Identities=16% Similarity=0.260 Sum_probs=156.6
Q ss_pred CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccc--cHHHHHHHHHhCCcCccEEEEEeecChhHHHHHHHhc
Q 023157 31 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG--FKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFM 108 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 108 (286)
...|-++|.+.|++-..... .++..++||+||||.-.-.. ....+..+++.. .+.++|.+|||+... .+.. ++
T Consensus 445 ~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larR-rdlKliVtSATm~a~--kf~n-fF 519 (1042)
T KOG0924|consen 445 DTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARR-RDLKLIVTSATMDAQ--KFSN-FF 519 (1042)
T ss_pred ceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhh-ccceEEEeeccccHH--HHHH-Hh
Confidence 45688999999987655432 45667899999999743221 123333333333 478999999999743 3333 34
Q ss_pred CCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhh---ccCcceEEEecchhhHHHHHHHHhc----------C
Q 023157 109 NKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET---LAITQSVIFVNTRRKVDWLTDKMRS----------R 175 (286)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ivf~~~~~~~~~l~~~l~~----------~ 175 (286)
++.....+..+.. .+...+...+-++..-.++.+.+.- ...+.++||.......+..+..++. .
T Consensus 520 gn~p~f~IpGRTy---PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~ 596 (1042)
T KOG0924|consen 520 GNCPQFTIPGRTY---PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTT 596 (1042)
T ss_pred CCCceeeecCCcc---ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCC
Confidence 4332233332222 2344444455555555556555542 2446799999887777666655543 2
Q ss_pred CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccC------------------CCCcchhh
Q 023157 176 DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PTQPENYL 237 (286)
Q Consensus 176 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~------------------~~s~~~~~ 237 (286)
++.+..+++.++.+.+.+++.....|..+++|||++++..+.+|++.+||..|+ |-|..+--
T Consensus 597 ~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~ 676 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANAD 676 (1042)
T ss_pred ceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccch
Confidence 578999999999999999999999999999999999999999999999998764 56788899
Q ss_pred hhhcccccCCCcceEEEEeccC
Q 023157 238 HRIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 238 Q~~GR~~R~~~~g~~~~~~~~~ 259 (286)
||.||+||. .+|.||.+|..+
T Consensus 677 QRaGRAGRt-~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 677 QRAGRAGRT-GPGTCYRLYTED 697 (1042)
T ss_pred hhccccCCC-CCcceeeehhhh
Confidence 999999997 689999999874
No 117
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=1.2e-15 Score=128.53 Aligned_cols=265 Identities=15% Similarity=0.165 Sum_probs=182.3
Q ss_pred CcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCC----CCCCCccEEEEehhhHhhccc---cHHHHHHHHHhC-----Cc
Q 023157 18 GTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS----LRPDYIKMFVLDEADEMLSRG---FKDQIYDIFQLL-----PA 85 (286)
Q Consensus 18 ~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~----~~~~~~~~iIiDE~h~~~~~~---~~~~~~~i~~~~-----~~ 85 (286)
+.+...+......+.+++++.|.+.......+. .++-...+++.||+|.+.... -..++.++.... ..
T Consensus 371 ~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~ 450 (1034)
T KOG4150|consen 371 KLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASI 450 (1034)
T ss_pred CCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhc
Confidence 333333344444588999999988876553322 233335789999999654331 112333333222 24
Q ss_pred CccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccch--------hhHHHHHHHHHhhc--cCcce
Q 023157 86 KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKE--------EWKLETLCDLYETL--AITQS 155 (286)
Q Consensus 86 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~l~~~~~~~--~~~~~ 155 (286)
+.+++-.+||+-++......-+..+...+..... .+..-.++..|-++. ..++.....++-.. .+-++
T Consensus 451 ~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG--SPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~ 528 (1034)
T KOG4150|consen 451 NMGVYDGDTPYKDRTRLRSELANLSELELVTIDG--SPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRC 528 (1034)
T ss_pred CcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC--CCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcE
Confidence 6789999999987776666555444444443333 333345555554431 11333333333222 45699
Q ss_pred EEEecchhhHHHHHHHHhc----CC----CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEc
Q 023157 156 VIFVNTRRKVDWLTDKMRS----RD----HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 227 (286)
Q Consensus 156 ivf~~~~~~~~~l~~~l~~----~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~ 227 (286)
|-||++++.++.+....++ .+ ..+..+.|+-..++|.++....-.|+..-+|+|++++-|+|+..++.|++.
T Consensus 529 IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~ 608 (1034)
T KOG4150|consen 529 IAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHL 608 (1034)
T ss_pred EEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEc
Confidence 9999999999987655443 22 135667889999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhhhcccccCCCcceEE--EEeccCcHHHHHHHHHHhchhcccCCcchhc
Q 023157 228 DLPTQPENYLHRIGRSGRFGRKGVAI--NFVTRDDERMLFDIQKFYNVVIEELPSNVAD 284 (286)
Q Consensus 228 ~~~~s~~~~~Q~~GR~~R~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 284 (286)
++|.|.+.+.|..||+||.++++..+ ....+-|+.++...+..+..+..++-.++.+
T Consensus 609 GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL~LD~~N 667 (1034)
T KOG4150|consen 609 GFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEELHLDSQN 667 (1034)
T ss_pred cCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCcceeEEeccc
Confidence 99999999999999999998876644 3444558888888888888888877766654
No 118
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=6.9e-15 Score=132.40 Aligned_cols=122 Identities=18% Similarity=0.204 Sum_probs=94.4
Q ss_pred HHHHHHHHHh--hccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCC-CcEEEEecCCccC
Q 023157 139 KLETLCDLYE--TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS-SRVLITTDLLARG 215 (286)
Q Consensus 139 ~~~~l~~~~~--~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~vlv~T~~~~~G 215 (286)
|...+..-+. ...+.+++|.+.|....+.++..|...|+...++++.-...+- .++. ..|. -.|.|||+++++|
T Consensus 553 k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea-~iia--~AG~~g~VTIATNmAGRG 629 (970)
T PRK12899 553 KYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEA-EIIA--GAGKLGAVTVATNMAGRG 629 (970)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHH-HHHH--hcCCCCcEEEeeccccCC
Confidence 4444444333 2366799999999999999999999999998888887443332 2322 3444 3699999999999
Q ss_pred CCCCCCc--------EEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHH
Q 023157 216 IDVQQVS--------LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM 263 (286)
Q Consensus 216 idi~~~~--------~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 263 (286)
.|+.--. +||....|.|.+--.|..||+||.|.+|.+-.+++-.|.-.
T Consensus 630 TDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDdL~ 685 (970)
T PRK12899 630 TDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRLM 685 (970)
T ss_pred cccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchHHH
Confidence 9996332 67778889999999999999999999999888888776443
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.66 E-value=1.2e-15 Score=134.02 Aligned_cols=208 Identities=18% Similarity=0.289 Sum_probs=130.2
Q ss_pred CCcEEEeCcHHHHHHHhcC-----CCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecChhHHHHHH
Q 023157 31 GVHVVVGTPGRVFDMLRRQ-----SLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITR 105 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~-----~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 105 (286)
.++|.++|.+.+....... ++....+|+|||||||+= .......++.++.. -.+++||||.......-.
T Consensus 256 s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I~dYFdA--~~~gLTATP~~~~d~~T~ 329 (875)
T COG4096 256 SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSILDYFDA--ATQGLTATPKETIDRSTY 329 (875)
T ss_pred ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHHHHHHHH--HHHhhccCcccccccccc
Confidence 4799999999999887654 345666999999999973 23334466666642 245559998753222111
Q ss_pred Hhc-CCCe--------------------EEEec--CCccccc-----------cc--eeEEEE----------ccchhhH
Q 023157 106 KFM-NKPV--------------------RILVK--RDELTLE-----------GI--KQFYVN----------VEKEEWK 139 (286)
Q Consensus 106 ~~~-~~~~--------------------~~~~~--~~~~~~~-----------~i--~~~~~~----------~~~~~~~ 139 (286)
.++ +.|. .+... .....+. .+ ....+. .......
T Consensus 330 ~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V 409 (875)
T COG4096 330 GFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETV 409 (875)
T ss_pred cccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHH
Confidence 222 2221 11110 0000000 01 000000 0001112
Q ss_pred HHHHHHHHhhc--c--CcceEEEecchhhHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHhh--cCCCcEEEE
Q 023157 140 LETLCDLYETL--A--ITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFR--SGSSRVLIT 208 (286)
Q Consensus 140 ~~~l~~~~~~~--~--~~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~--~~~~~vlv~ 208 (286)
...+.+.+... . -+|+||||.+..+|+.+.+.|... +--+..+.++-... + ..+..|. +....|.|+
T Consensus 410 ~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~-q-~~Id~f~~ke~~P~Iait 487 (875)
T COG4096 410 ARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA-Q-ALIDNFIDKEKYPRIAIT 487 (875)
T ss_pred HHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh-H-HHHHHHHhcCCCCceEEe
Confidence 33344444442 1 359999999999999999999764 23466666654433 2 3344443 445689999
Q ss_pred ecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccC
Q 023157 209 TDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 246 (286)
Q Consensus 209 T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 246 (286)
++++..|+|+|.|.++|++....|...|.||+||+.|.
T Consensus 488 vdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 488 VDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 99999999999999999999999999999999999995
No 120
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.66 E-value=4.9e-15 Score=134.30 Aligned_cols=116 Identities=23% Similarity=0.331 Sum_probs=104.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc---CCCcEEEEecCCccCCCCCCCcEEEEc
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS---GSSRVLITTDLLARGIDVQQVSLVINY 227 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~~~vlv~T~~~~~Gidi~~~~~vi~~ 227 (286)
.|++|+||........-|+++|..+++....+.|.+..+.|...++.|+. .+..+|+||.+++-|||+..++.||+|
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIF 777 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIF 777 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEe
Confidence 56799999999999999999999999999999999999999999999975 456799999999999999999999999
Q ss_pred cCCCCcchhhhhhcccccCCCc--ceEEEEeccC--cHHHHHH
Q 023157 228 DLPTQPENYLHRIGRSGRFGRK--GVAINFVTRD--DERMLFD 266 (286)
Q Consensus 228 ~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~--~~~~~~~ 266 (286)
|.-|++..-+|...||+|.|+. ..+|.|++.. +.+.+.+
T Consensus 778 DSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilER 820 (1373)
T KOG0384|consen 778 DSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILER 820 (1373)
T ss_pred CCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHH
Confidence 9999999999999999999876 5688888886 3444443
No 121
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=5.4e-15 Score=122.45 Aligned_cols=210 Identities=17% Similarity=0.275 Sum_probs=143.3
Q ss_pred EeCcHHHHHHHhcCCCCCCCccEEEEehhhHh--hccccHHHHHHHHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeE
Q 023157 36 VGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM--LSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVR 113 (286)
Q Consensus 36 i~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~--~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~ 113 (286)
.||.++|++-...++ .+...++||+||+|.- ........++.+....+ ..+++.||||+.... ...++++.-.
T Consensus 141 y~tDgmLlrEams~p-~l~~y~viiLDeahERtlATDiLmGllk~v~~~rp-dLk~vvmSatl~a~K---fq~yf~n~Pl 215 (699)
T KOG0925|consen 141 YCTDGMLLREAMSDP-LLGRYGVIILDEAHERTLATDILMGLLKEVVRNRP-DLKLVVMSATLDAEK---FQRYFGNAPL 215 (699)
T ss_pred HhcchHHHHHHhhCc-ccccccEEEechhhhhhHHHHHHHHHHHHHHhhCC-CceEEEeecccchHH---HHHHhCCCCe
Confidence 456666666555444 3566899999999963 33445566777777774 899999999987442 3345555544
Q ss_pred EEecCCccccccceeEEEEccchh---hHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC---------CCeeEE
Q 023157 114 ILVKRDELTLEGIKQFYVNVEKEE---WKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR---------DHTVSA 181 (286)
Q Consensus 114 ~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~---------~~~~~~ 181 (286)
+.+.. . ..+..++......+ ..+..+.++......+.++||.....+.+..++.+... ...+..
T Consensus 216 l~vpg--~--~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~P 291 (699)
T KOG0925|consen 216 LAVPG--T--HPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVP 291 (699)
T ss_pred eecCC--C--CceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEe
Confidence 44433 1 12222333222222 23455566666556789999999999999988888643 245666
Q ss_pred ecCCCCHHHHHHHHHHhhc---C--CCcEEEEecCCccCCCCCCCcEEEEccC------------------CCCcchhhh
Q 023157 182 THGDMDQNTRDIIMREFRS---G--SSRVLITTDLLARGIDVQQVSLVINYDL------------------PTQPENYLH 238 (286)
Q Consensus 182 ~~~~~~~~~r~~~~~~f~~---~--~~~vlv~T~~~~~Gidi~~~~~vi~~~~------------------~~s~~~~~Q 238 (286)
+| ++++..+++-... | ..+|.|+|.+++..+.++++.+||.-|+ |-|..+-.|
T Consensus 292 Ly----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~q 367 (699)
T KOG0925|consen 292 LY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQ 367 (699)
T ss_pred cC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHH
Confidence 77 3444444443321 2 2489999999999999999999997553 568889999
Q ss_pred hhcccccCCCcceEEEEeccC
Q 023157 239 RIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 239 ~~GR~~R~~~~g~~~~~~~~~ 259 (286)
|.||+||. .+|+|+++|.+.
T Consensus 368 R~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 368 RAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred HhhhccCC-CCCceEEeecHH
Confidence 99999996 889999999874
No 122
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=2.5e-14 Score=125.79 Aligned_cols=121 Identities=18% Similarity=0.252 Sum_probs=94.7
Q ss_pred HHHHHHHHHh--hccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCC-CcEEEEecCCccC
Q 023157 139 KLETLCDLYE--TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS-SRVLITTDLLARG 215 (286)
Q Consensus 139 ~~~~l~~~~~--~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~vlv~T~~~~~G 215 (286)
|...+..-+. ...+.++||.+.|....+.+++.|.+.|+...++++.-...+ ..++. ..|+ -.|.|||+++++|
T Consensus 412 k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa--~AG~~gaVTIATNMAGRG 488 (764)
T PRK12326 412 KNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-ARIIA--EAGKYGAVTVSTQMAGRG 488 (764)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-HHHHH--hcCCCCcEEEEecCCCCc
Confidence 5554444443 236779999999999999999999999999999998754333 33332 3344 3599999999999
Q ss_pred CCCCCC---------------cEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHH
Q 023157 216 IDVQQV---------------SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 262 (286)
Q Consensus 216 idi~~~---------------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 262 (286)
.|+.-- =+||-...|.|.+--.|..||+||.|.+|.+-.+++-.|.-
T Consensus 489 TDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDdl 550 (764)
T PRK12326 489 TDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDDV 550 (764)
T ss_pred cCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchhH
Confidence 998733 27788888999999999999999999999988888776543
No 123
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.63 E-value=1.9e-14 Score=128.81 Aligned_cols=206 Identities=22% Similarity=0.368 Sum_probs=139.7
Q ss_pred cCceEEEEEcCcchHHHHH----HHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccc-----------c
Q 023157 8 LGVKVHACVGGTSVREDQR----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-----------F 72 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~----~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-----------~ 72 (286)
+++.+. +||..+..+..+ +-.++.||+|+|.+.|...+.. +..-+|++|++|+++.+...+ |
T Consensus 155 ~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf 231 (1187)
T COG1110 155 LDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDRLLRLLGF 231 (1187)
T ss_pred cceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHHHHHHcCC
Confidence 445555 788766555343 3345899999999887766653 112357899999999866432 1
Q ss_pred HH-------HHHHHHHh------------------------CCcCccEEEEEeecChhH--HHHHHHhcCCCeEEEecCC
Q 023157 73 KD-------QIYDIFQL------------------------LPAKVQVGVFSATMPPEA--LEITRKFMNKPVRILVKRD 119 (286)
Q Consensus 73 ~~-------~~~~i~~~------------------------~~~~~~~i~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~ 119 (286)
.. .+..+... ..+..+++..|||..+.- ..+.+.+++ ......
T Consensus 232 ~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----FevG~~ 307 (1187)
T COG1110 232 SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----FEVGSG 307 (1187)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----CccCcc
Confidence 11 01111111 123467999999986543 223333333 223333
Q ss_pred ccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecc---hhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHH
Q 023157 120 ELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNT---RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 196 (286)
Q Consensus 120 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 196 (286)
.....++...+... .....+.++++... .-.|||++. +..|+++++.|+++|+++..+|++ ....++
T Consensus 308 ~~~LRNIvD~y~~~----~~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le 377 (1187)
T COG1110 308 GEGLRNIVDIYVES----ESLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALE 377 (1187)
T ss_pred chhhhheeeeeccC----ccHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhh
Confidence 34445555554443 24455556666554 478999999 999999999999999999999984 278899
Q ss_pred HhhcCCCcEEEEe----cCCccCCCCC-CCcEEEEccCC
Q 023157 197 EFRSGSSRVLITT----DLLARGIDVQ-QVSLVINYDLP 230 (286)
Q Consensus 197 ~f~~~~~~vlv~T----~~~~~Gidi~-~~~~vi~~~~~ 230 (286)
.|..|++++||++ ..+-+|+|+| .+..+|++|.|
T Consensus 378 ~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 378 DFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9999999999988 4789999999 48999999977
No 124
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.61 E-value=8.9e-15 Score=122.90 Aligned_cols=223 Identities=17% Similarity=0.197 Sum_probs=135.2
Q ss_pred cCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHH-HHHHHhCCcC
Q 023157 8 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI-YDIFQLLPAK 86 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~-~~i~~~~~~~ 86 (286)
.|+.+-.++|........+ ...+..+-||-||.. .-..+++.||||++.+.+.+.+-.. ..++-...+.
T Consensus 238 ~gipCdL~TGeE~~~~~~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE 307 (700)
T KOG0953|consen 238 LGIPCDLLTGEERRFVLDN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE 307 (700)
T ss_pred cCCCccccccceeeecCCC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhh
Confidence 4677777777422221111 113566677765442 2233689999999998765433211 2221111112
Q ss_pred ccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHH
Q 023157 87 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVD 166 (286)
Q Consensus 87 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~ 166 (286)
.++-+ .|....+.+..+... ...+....+..-......+.+..-++....+.++ .+.|++...
T Consensus 308 iHLCG-----epsvldlV~~i~k~T-----------Gd~vev~~YeRl~pL~v~~~~~~sl~nlk~GDCv-V~FSkk~I~ 370 (700)
T KOG0953|consen 308 IHLCG-----EPSVLDLVRKILKMT-----------GDDVEVREYERLSPLVVEETALGSLSNLKPGDCV-VAFSKKDIF 370 (700)
T ss_pred hhccC-----CchHHHHHHHHHhhc-----------CCeeEEEeecccCcceehhhhhhhhccCCCCCeE-EEeehhhHH
Confidence 22211 123334444333210 0111111111111111222333444444444453 344667788
Q ss_pred HHHHHHhcCCCe-eEEecCCCCHHHHHHHHHHhhc--CCCcEEEEecCCccCCCCCCCcEEEEccC---------CCCcc
Q 023157 167 WLTDKMRSRDHT-VSATHGDMDQNTRDIIMREFRS--GSSRVLITTDLLARGIDVQQVSLVINYDL---------PTQPE 234 (286)
Q Consensus 167 ~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gidi~~~~~vi~~~~---------~~s~~ 234 (286)
.+...+..++.. +++++|.+|++.|.+....|++ ++.+|||||+++++|+|+ +++.||+++. +-+.+
T Consensus 371 ~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~s 449 (700)
T KOG0953|consen 371 TVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVS 449 (700)
T ss_pred HHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHH
Confidence 888888888765 9999999999999999999987 889999999999999999 8999999886 34678
Q ss_pred hhhhhhcccccCCCc---ceEEEEecc
Q 023157 235 NYLHRIGRSGRFGRK---GVAINFVTR 258 (286)
Q Consensus 235 ~~~Q~~GR~~R~~~~---g~~~~~~~~ 258 (286)
+..|..|||||.|.. |.+.++..+
T Consensus 450 qikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 450 QIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred HHHHHhhcccccccCCcCceEEEeeHh
Confidence 899999999998653 666665544
No 125
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=5.2e-14 Score=125.57 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=94.2
Q ss_pred HHHHHHHHHh--hccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCC-CcEEEEecCCccC
Q 023157 139 KLETLCDLYE--TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS-SRVLITTDLLARG 215 (286)
Q Consensus 139 ~~~~l~~~~~--~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~vlv~T~~~~~G 215 (286)
|...+..-+. ...+.++||.|.|...++.+++.|.+.|+...++++.....+ ..++. ..|. -.|.|||+++++|
T Consensus 411 K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~E-A~IIa--~AG~~GaVTIATNMAGRG 487 (925)
T PRK12903 411 KWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNARE-AEIIA--KAGQKGAITIATNMAGRG 487 (925)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhH-HHHHH--hCCCCCeEEEecccccCC
Confidence 4444444333 236779999999999999999999999999999998744333 23332 4554 4699999999999
Q ss_pred CCCCCCc--------EEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcH
Q 023157 216 IDVQQVS--------LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDE 261 (286)
Q Consensus 216 idi~~~~--------~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 261 (286)
.|+.--. +||....|.|.+--.|..||+||.|.+|.+-.+++-.|.
T Consensus 488 TDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~ 541 (925)
T PRK12903 488 TDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQ 541 (925)
T ss_pred cCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecchH
Confidence 9997443 888888999998899999999999999998877777654
No 126
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.60 E-value=1.7e-13 Score=123.93 Aligned_cols=94 Identities=14% Similarity=0.207 Sum_probs=73.1
Q ss_pred CcceEEEecchhhHHHHHHHHhcC-----CCeeEEecCCCCHH---------------------HHHHHHHHhhc-CCCc
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQN---------------------TRDIIMREFRS-GSSR 204 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~---------------------~r~~~~~~f~~-~~~~ 204 (286)
+.+++|||.++.+|..+++.|.+. +....++++..+.. ....++++|+. +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 479999999999999999888654 23455565543322 12367888865 6789
Q ss_pred EEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccC
Q 023157 205 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 246 (286)
Q Consensus 205 vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 246 (286)
++|+++++.+|+|.|.++++++.-+-.+ ..++|++||+.|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 9999999999999999999986665554 4689999999994
No 127
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.59 E-value=2.6e-14 Score=111.40 Aligned_cols=112 Identities=49% Similarity=0.775 Sum_probs=97.6
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
++.+..++++..++|+....+....+..+++|+|+||+.+.+.+.+....+.+++++|+||+|.+.+.++...+..+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~ 170 (203)
T cd00268 91 KLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKL 170 (203)
T ss_pred HHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHh
Confidence 34455688999999999987777777778999999999999999888888889999999999999888888999999999
Q ss_pred CCcCccEEEEEeecChhHHHHHHHhcCCCeEE
Q 023157 83 LPAKVQVGVFSATMPPEALEITRKFMNKPVRI 114 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 114 (286)
++.+.+++++|||+++........+..++..+
T Consensus 171 l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 171 LPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred CCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 98899999999999998888888888776543
No 128
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=8e-14 Score=125.44 Aligned_cols=121 Identities=15% Similarity=0.187 Sum_probs=93.7
Q ss_pred HHHHHHHHHh--hccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCC-CcEEEEecCCccC
Q 023157 139 KLETLCDLYE--TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS-SRVLITTDLLARG 215 (286)
Q Consensus 139 ~~~~l~~~~~--~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~vlv~T~~~~~G 215 (286)
|...+.+-+. ...+.++||-+.|....+.+++.|+..++...++++.....+ ..++. ..|. -.|.|||+++++|
T Consensus 434 K~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~E-A~IIa--~AG~~GaVTIATNMAGRG 510 (913)
T PRK13103 434 KYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKE-AEIIA--QAGRPGALTIATNMAGRG 510 (913)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhH-HHHHH--cCCCCCcEEEeccCCCCC
Confidence 5555554444 236789999999999999999999999998888887644333 23333 4454 3699999999999
Q ss_pred CCCCCC-------------------------------------cEEEEccCCCCcchhhhhhcccccCCCcceEEEEecc
Q 023157 216 IDVQQV-------------------------------------SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTR 258 (286)
Q Consensus 216 idi~~~-------------------------------------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 258 (286)
.|+.-- =+||-...|.|.+-=.|..||+||.|.+|.+-.+++-
T Consensus 511 TDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSl 590 (913)
T PRK13103 511 TDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 590 (913)
T ss_pred CCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEc
Confidence 999511 2677788899999999999999999999998888887
Q ss_pred CcHH
Q 023157 259 DDER 262 (286)
Q Consensus 259 ~~~~ 262 (286)
.|.-
T Consensus 591 ED~L 594 (913)
T PRK13103 591 EDSL 594 (913)
T ss_pred CcHH
Confidence 6543
No 129
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.57 E-value=4.1e-13 Score=117.28 Aligned_cols=125 Identities=21% Similarity=0.292 Sum_probs=106.1
Q ss_pred HHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHh-cCCCeeEEecCCCCHHHHHHHHHHhhcCCC--cEEEEecCCc
Q 023157 139 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMR-SRDHTVSATHGDMDQNTRDIIMREFRSGSS--RVLITTDLLA 213 (286)
Q Consensus 139 ~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vlv~T~~~~ 213 (286)
|+..+..++... .+.++++|..++....-+-..|. ..+++...+.|.++...|..++++|+++.. -.|++|.+++
T Consensus 531 Km~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGG 610 (923)
T KOG0387|consen 531 KMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGG 610 (923)
T ss_pred hHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccc
Confidence 455555555533 55699999999999998888888 579999999999999999999999997764 4678889999
Q ss_pred cCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCc--ceEEEEeccCcHHH
Q 023157 214 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDDERM 263 (286)
Q Consensus 214 ~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~~~ 263 (286)
-|+|+-.++.||+|||.|+++.-.|..-|+.|.|+. ..+|.+.+....+.
T Consensus 611 LGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEE 662 (923)
T KOG0387|consen 611 LGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEE 662 (923)
T ss_pred cccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHH
Confidence 999999999999999999999999999999999876 45777777764443
No 130
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.55 E-value=1.9e-13 Score=121.67 Aligned_cols=81 Identities=27% Similarity=0.435 Sum_probs=69.2
Q ss_pred eeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEcc--CCCCcchhhhhhcccccCCCc--ceEE
Q 023157 178 TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD--LPTQPENYLHRIGRSGRFGRK--GVAI 253 (286)
Q Consensus 178 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~--~~~s~~~~~Q~~GR~~R~~~~--g~~~ 253 (286)
++.++|++++...|..+.-.|+.|...|++||..++-|||+|. +.|++.+ ..-++-.|-||.|||||.|-+ |.|+
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPC-rTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPC-RTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred cccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCc-eeEEEeccccccCchhHHhhhccccccccccccceE
Confidence 4899999999999999999999999999999999999999987 4454444 345788999999999999854 8877
Q ss_pred EEeccC
Q 023157 254 NFVTRD 259 (286)
Q Consensus 254 ~~~~~~ 259 (286)
.+-.+.
T Consensus 1043 FmgiP~ 1048 (1330)
T KOG0949|consen 1043 FMGIPR 1048 (1330)
T ss_pred EEeCcH
Confidence 766664
No 131
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.52 E-value=8.7e-12 Score=105.21 Aligned_cols=237 Identities=14% Similarity=0.218 Sum_probs=172.3
Q ss_pred CCcEEEeCcHHHHHHHhc------CCCCCCCccEEEEehhhHhh--ccccHHHHHHHHHhCCcC----------------
Q 023157 31 GVHVVVGTPGRVFDMLRR------QSLRPDYIKMFVLDEADEML--SRGFKDQIYDIFQLLPAK---------------- 86 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~------~~~~~~~~~~iIiDE~h~~~--~~~~~~~~~~i~~~~~~~---------------- 86 (286)
++|||||+|=-|...+.. ..-++++++++|+|.+|.+. +|.....+...+...|++
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 689999999888777663 33467889999999999776 333233333334444432
Q ss_pred -----ccEEEEEeecChhHHHHHHHhcCCCe---EEEecCC-----ccccccceeEEEEccchh------hHH----HHH
Q 023157 87 -----VQVGVFSATMPPEALEITRKFMNKPV---RILVKRD-----ELTLEGIKQFYVNVEKEE------WKL----ETL 143 (286)
Q Consensus 87 -----~~~i~~SAT~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~i~~~~~~~~~~~------~~~----~~l 143 (286)
.|.|++|+...++...+....+.+.. .+..... ......+.|.+...+... ... ..+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 38999999999999888887554432 1111111 123456677777644322 111 112
Q ss_pred HHHHh-hccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC--CccCCCCCC
Q 023157 144 CDLYE-TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL--LARGIDVQQ 220 (286)
Q Consensus 144 ~~~~~-~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~--~~~Gidi~~ 220 (286)
..-+. ......++||++|--+--.+.+.|++.++....++.-.+..+-.+.-..|..|+.++|+.|.= .-+-..+.+
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irG 370 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRG 370 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecC
Confidence 22333 445579999999999999999999999999999999999999999999999999999999962 334467888
Q ss_pred CcEEEEccCCCCcchhhhhhcccccCCC------cceEEEEeccCcHHHHHHH
Q 023157 221 VSLVINYDLPTQPENYLHRIGRSGRFGR------KGVAINFVTRDDERMLFDI 267 (286)
Q Consensus 221 ~~~vi~~~~~~s~~~~~Q~~GR~~R~~~------~g~~~~~~~~~~~~~~~~~ 267 (286)
+.+||+|++|..+.-|-..++-.+.... .+.|.++++.-|.-.++++
T Consensus 371 i~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 371 IRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred CcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 9999999999998888777755544322 4789999999988777666
No 132
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.49 E-value=5e-13 Score=116.68 Aligned_cols=122 Identities=20% Similarity=0.243 Sum_probs=104.0
Q ss_pred HHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCC--CcEEEEecCCcc
Q 023157 139 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS--SRVLITTDLLAR 214 (286)
Q Consensus 139 ~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~~~~~ 214 (286)
|...+..++... .|.+++||..-.....-+-..|...++....+.|.+.-.+|..++..|+..+ .-+|++|.+++.
T Consensus 762 K~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~ 841 (941)
T KOG0389|consen 762 KCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGF 841 (941)
T ss_pred hHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcc
Confidence 444455555533 5579999999988888888888999999999999999999999999998655 357899999999
Q ss_pred CCCCCCCcEEEEccCCCCcchhhhhhcccccCCCc--ceEEEEeccCc
Q 023157 215 GIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDD 260 (286)
Q Consensus 215 Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~ 260 (286)
|||+-.+++||++|...++-.-.|.--||+|.|+. ..++.+++...
T Consensus 842 GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 842 GINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred eecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 99999999999999999999999999999999864 66778887764
No 133
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.44 E-value=9.1e-13 Score=99.55 Aligned_cols=97 Identities=23% Similarity=0.445 Sum_probs=77.8
Q ss_pred cccccCceEEEEEcCcchH-HHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 4 LGDYLGVKVHACVGGTSVR-EDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
+....++++..++|+.... .....+..+++|+|+||+++.+.+......+.++++||+||+|.+..+.+...+..+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~ 146 (169)
T PF00270_consen 67 FFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRR 146 (169)
T ss_dssp HTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHH
Confidence 3444677999999998865 444455567999999999999999886556677999999999999888777888888777
Q ss_pred CC--cCccEEEEEeecChhH
Q 023157 83 LP--AKVQVGVFSATMPPEA 100 (286)
Q Consensus 83 ~~--~~~~~i~~SAT~~~~~ 100 (286)
+. .+.+++++|||+++..
T Consensus 147 ~~~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 147 LKRFKNIQIILLSATLPSNV 166 (169)
T ss_dssp SHTTTTSEEEEEESSSTHHH
T ss_pred hcCCCCCcEEEEeeCCChhH
Confidence 63 3689999999998544
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.41 E-value=1.6e-11 Score=110.41 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=53.7
Q ss_pred ccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCC-CHHHHHHHHHHhhcCC-CcEEEEecCCccCCCCC
Q 023157 150 LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDM-DQNTRDIIMREFRSGS-SRVLITTDLLARGIDVQ 219 (286)
Q Consensus 150 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~r~~~~~~f~~~~-~~vlv~T~~~~~Gidi~ 219 (286)
..+.+++|.+.|....+.+++.|...|+...++++.- ..+.-..++.. .|. -.|.|||+++++|.|+.
T Consensus 422 ~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 422 QTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred hcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 3677999999999999999999999999999999873 22222334432 444 35999999999998885
No 135
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.40 E-value=4.9e-11 Score=106.31 Aligned_cols=100 Identities=19% Similarity=0.244 Sum_probs=80.1
Q ss_pred cchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCC--c-EEEEecCCccCCCCCCCcEEEEccCCCCcchh
Q 023157 160 NTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS--R-VLITTDLLARGIDVQQVSLVINYDLPTQPENY 236 (286)
Q Consensus 160 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~-vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~ 236 (286)
|-....+.+...++-+|+.+..++|.++..+|..+++.|++... . .|.+|.+++.|+|+-+++.+|++|++|+++.=
T Consensus 603 ny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d 682 (776)
T KOG0390|consen 603 NYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVD 682 (776)
T ss_pred cHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhH
Confidence 33333333334444458999999999999999999999986442 3 55677899999999999999999999999999
Q ss_pred hhhhcccccCCCcce--EEEEeccC
Q 023157 237 LHRIGRSGRFGRKGV--AINFVTRD 259 (286)
Q Consensus 237 ~Q~~GR~~R~~~~g~--~~~~~~~~ 259 (286)
.|.++|+.|.|++-. +|.|+...
T Consensus 683 ~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 683 QQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred HHHHHHhccCCCcceEEEEEeecCC
Confidence 999999999998755 45555554
No 136
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.37 E-value=4.9e-11 Score=106.93 Aligned_cols=250 Identities=11% Similarity=0.065 Sum_probs=138.7
Q ss_pred ccccccC-ceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccc-----c
Q 023157 3 ALGDYLG-VKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-----F 72 (286)
Q Consensus 3 ~~~~~~~-~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-----~ 72 (286)
+|.+.+| ..+..+|++.+..+..+.|. +..+|+|+|...+ ..++.++++||+||-|.-.... +
T Consensus 207 rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~y 279 (665)
T PRK14873 207 ALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYP 279 (665)
T ss_pred HHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCc
Confidence 4556676 78999999999887776553 3689999994333 3578889999999999644322 1
Q ss_pred H-HHHHHHHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCC--ccccccceeEEEEccch-------h----h
Q 023157 73 K-DQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD--ELTLEGIKQFYVNVEKE-------E----W 138 (286)
Q Consensus 73 ~-~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~-------~----~ 138 (286)
. ..+..+... ..++.+++-||||+-+.+....... ...+..... ....+.+.. ...... . -
T Consensus 280 haRdvA~~Ra~-~~~~~lvLgSaTPSles~~~~~~g~--~~~~~~~~~~~~~~~P~v~~--vd~~~~~~~~~~~~~g~~l 354 (665)
T PRK14873 280 HAREVALLRAH-QHGCALLIGGHARTAEAQALVESGW--AHDLVAPRPVVRARAPRVRA--LGDSGLALERDPAARAARL 354 (665)
T ss_pred cHHHHHHHHHH-HcCCcEEEECCCCCHHHHHHHhcCc--ceeeccccccccCCCCeEEE--EeCchhhhccccccccCcc
Confidence 2 223333333 3578899999999876655443221 111111111 111111111 111000 0 0
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHH-HHHHhc----------------C--------CCe----eEEecC-----
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWL-TDKMRS----------------R--------DHT----VSATHG----- 184 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l-~~~l~~----------------~--------~~~----~~~~~~----- 184 (286)
....+..+-+....+++|||+|.+..+..+ +..... . |.. .+.-.|
T Consensus 355 s~~l~~~i~~~L~~gqvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~ 434 (665)
T PRK14873 355 PSLAFRAARDALEHGPVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLR 434 (665)
T ss_pred CHHHHHHHHHHHhcCcEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcce
Confidence 012222222233334999999998866543 121110 0 000 000000
Q ss_pred --CCC------------------HHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCC------C------C
Q 023157 185 --DMD------------------QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP------T------Q 232 (286)
Q Consensus 185 --~~~------------------~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~------~------s 232 (286)
+.. ..++..+++.|. ++.+|+|+|+.++.-+. ++++.|+++|.- . .
T Consensus 435 ~~g~Gter~eeeL~~~FP~~~V~r~d~d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~ 512 (665)
T PRK14873 435 AVVVGARRTAEELGRAFPGVPVVTSGGDQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDT 512 (665)
T ss_pred eeeccHHHHHHHHHHHCCCCCEEEEChHHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHH
Confidence 000 012345777886 58999999994333333 467888777642 1 2
Q ss_pred cchhhhhhcccccCCCcceEEEEeccCcHHHHHHH
Q 023157 233 PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 267 (286)
Q Consensus 233 ~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 267 (286)
...+.|..||+||...+|.+++...++ ...+..+
T Consensus 513 ~qll~qvagragr~~~~G~V~iq~~p~-~~~~~~l 546 (665)
T PRK14873 513 LRRWMAAAALVRPRADGGQVVVVAESS-LPTVQAL 546 (665)
T ss_pred HHHHHHHHHhhcCCCCCCEEEEEeCCC-CHHHHHH
Confidence 456789999999988899999887444 3444433
No 137
>COG4889 Predicted helicase [General function prediction only]
Probab=99.35 E-value=5.1e-13 Score=117.98 Aligned_cols=217 Identities=14% Similarity=0.203 Sum_probs=129.0
Q ss_pred CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccH----HHHHHHHHh-CCcCccEEEEEeecChhHHHH--
Q 023157 31 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK----DQIYDIFQL-LPAKVQVGVFSATMPPEALEI-- 103 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~----~~~~~i~~~-~~~~~~~i~~SAT~~~~~~~~-- 103 (286)
+--|+++|.+.+...-.....-+..+++||.||||+-..-.+. ....++-+. .-+..+.+.|||||.-.....
T Consensus 280 ~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~ 359 (1518)
T COG4889 280 GLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKA 359 (1518)
T ss_pred CcEEEEEcccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhh
Confidence 5679999999998887776677788999999999975432211 111111111 012456889999974211111
Q ss_pred -------------------------------HHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHH-----
Q 023157 104 -------------------------------TRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLY----- 147 (286)
Q Consensus 104 -------------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~----- 147 (286)
.+.++.+...+....++.......+....-+...-.++....++
T Consensus 360 kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnG 439 (1518)
T COG4889 360 KAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNG 439 (1518)
T ss_pred hhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhh
Confidence 11111122222222111111111111111111111111111111
Q ss_pred --hhc--------------cCcceEEEecchhhHHHHHHHHhc-------------CCC--eeEEecCCCCHHHHHHHHH
Q 023157 148 --ETL--------------AITQSVIFVNTRRKVDWLTDKMRS-------------RDH--TVSATHGDMDQNTRDIIMR 196 (286)
Q Consensus 148 --~~~--------------~~~~~ivf~~~~~~~~~l~~~l~~-------------~~~--~~~~~~~~~~~~~r~~~~~ 196 (286)
+.. +..+.|-||.++++...+++.+.. .++ ++..+.|.|...+|...++
T Consensus 440 lakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~ 519 (1518)
T COG4889 440 LAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLE 519 (1518)
T ss_pred hhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHh
Confidence 110 112678899998888777765532 233 4555557788888865555
Q ss_pred Hh---hcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCC
Q 023157 197 EF---RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFG 247 (286)
Q Consensus 197 ~f---~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~ 247 (286)
.- ...+++||--...+++|+|+|.++.||++++..|..+.+|.+||+.|..
T Consensus 520 l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 520 LKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred ccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 33 4567889988899999999999999999999999999999999999973
No 138
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.35 E-value=1.5e-10 Score=96.64 Aligned_cols=121 Identities=17% Similarity=0.275 Sum_probs=99.8
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcC-CCcE-EEEecCCccCCCCCCCcEEEEcc
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSRV-LITTDLLARGIDVQQVSLVINYD 228 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~v-lv~T~~~~~Gidi~~~~~vi~~~ 228 (286)
++.|.+||+......+.+...+.+++.+...+.|.++..+|....+.|... +..| +++-.+++.|+++...+.|++..
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaE 570 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAE 570 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEE
Confidence 556999999999999999999999999999999999999999999999754 4444 35557889999999999999999
Q ss_pred CCCCcchhhhhhcccccCCCcceEEEEe--cc--CcHHHHHHHHHHh
Q 023157 229 LPTQPENYLHRIGRSGRFGRKGVAINFV--TR--DDERMLFDIQKFY 271 (286)
Q Consensus 229 ~~~s~~~~~Q~~GR~~R~~~~g~~~~~~--~~--~~~~~~~~~~~~~ 271 (286)
.++++.-++|.-.|+.|.|+..-|.+.| -. .|......+.+-+
T Consensus 571 L~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 571 LHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred ecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHH
Confidence 9999999999999999999875544433 22 2555555554433
No 139
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.34 E-value=1e-11 Score=113.31 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=67.0
Q ss_pred eEEEecchhhHHHHHHHHhc----C--CCeeEEecCCCCHHHHHHHHHHh----------------------hc----CC
Q 023157 155 SVIFVNTRRKVDWLTDKMRS----R--DHTVSATHGDMDQNTRDIIMREF----------------------RS----GS 202 (286)
Q Consensus 155 ~ivf~~~~~~~~~l~~~l~~----~--~~~~~~~~~~~~~~~r~~~~~~f----------------------~~----~~ 202 (286)
.+|-+++++.+-.++..|-. . .+....+|+..+...|..+.+.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 36777777766666666543 2 34588899999888877766543 11 35
Q ss_pred CcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCC
Q 023157 203 SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR 248 (286)
Q Consensus 203 ~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~ 248 (286)
..|+|+|++++.|+|+ +.+.+| .-|.+...++|+.||+.|.+.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhccccccc
Confidence 6899999999999999 566664 445668999999999999764
No 140
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.33 E-value=9.6e-11 Score=107.28 Aligned_cols=246 Identities=14% Similarity=0.191 Sum_probs=164.8
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccH------HH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK------DQ 75 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~------~~ 75 (286)
++|....|.++..++|..+.+- .+....+|+|+||++|-.+ . ..+++++.|.||+|.+.+.. + -.
T Consensus 1208 ~~f~~~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~-g~v~evi~S 1278 (1674)
T KOG0951|consen 1208 KKFSKLLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVY-GAVYEVICS 1278 (1674)
T ss_pred HhhccccCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccC-CceEEEEee
Confidence 4667778999999999877543 2223468999999999665 2 56778999999999876321 2 12
Q ss_pred HHHHHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccc--hhh--------HHHHHHH
Q 023157 76 IYDIFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK--EEW--------KLETLCD 145 (286)
Q Consensus 76 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~--------~~~~l~~ 145 (286)
+..|.+.+.++.+++++|..+... ..+ ..-....+....++..+.....+...+.. ... ....+.+
T Consensus 1279 ~r~ia~q~~k~ir~v~ls~~lana-~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~ 1354 (1674)
T KOG0951|consen 1279 MRYIASQLEKKIRVVALSSSLANA-RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVR 1354 (1674)
T ss_pred HHHHHHHHHhheeEEEeehhhccc-hhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHH
Confidence 566667777889999999987632 222 22222333333333333333333332222 111 1122222
Q ss_pred HHhhccCcceEEEecchhhHHHHHHHHhcC----------------------CCeeEEecCCCCHHHHHHHHHHhhcCCC
Q 023157 146 LYETLAITQSVIFVNTRRKVDWLTDKMRSR----------------------DHTVSATHGDMDQNTRDIIMREFRSGSS 203 (286)
Q Consensus 146 ~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 203 (286)
.. ..+++.+||++++++|..++..+-.. .....+-|.+++..+..-+-..|..|.+
T Consensus 1355 ~a--~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i 1432 (1674)
T KOG0951|consen 1355 HA--GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAI 1432 (1674)
T ss_pred Hh--cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcE
Confidence 22 25679999999999999887644210 1222333899999999999999999999
Q ss_pred cEEEEecCCccCCCCCCCcEEEEccC-----------CCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHH
Q 023157 204 RVLITTDLLARGIDVQQVSLVINYDL-----------PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 267 (286)
Q Consensus 204 ~vlv~T~~~~~Gidi~~~~~vi~~~~-----------~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 267 (286)
.|+|.+.. ..|+-. ..+.|+.+|- +.+.....||.|++.| .|.|+++++..+..+++++
T Consensus 1433 ~v~v~s~~-~~~~~~-~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1433 QVCVMSRD-CYGTKL-KAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred EEEEEEcc-cccccc-cceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHh
Confidence 99999887 888766 3455655442 4568899999999988 4889999999988877655
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=1.7e-10 Score=103.84 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=58.8
Q ss_pred HHHHHHHHHh--hccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCC-CCHHHHHHHHHHhhcCCC-cEEEEecCCcc
Q 023157 139 KLETLCDLYE--TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGD-MDQNTRDIIMREFRSGSS-RVLITTDLLAR 214 (286)
Q Consensus 139 ~~~~l~~~~~--~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~r~~~~~~f~~~~~-~vlv~T~~~~~ 214 (286)
|...+...+. ...+.+++|-+.|....+.+++.|...|+...++++. ...+.-..++. ..|.. .|.|||+++++
T Consensus 424 K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa--~AG~~GaVTIATNMAGR 501 (939)
T PRK12902 424 KWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVA--QAGRKGAVTIATNMAGR 501 (939)
T ss_pred HHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHH--hcCCCCcEEEeccCCCC
Confidence 4444444433 3367899999999999999999999999999999986 33233334444 24543 59999999999
Q ss_pred CCCCC
Q 023157 215 GIDVQ 219 (286)
Q Consensus 215 Gidi~ 219 (286)
|.||.
T Consensus 502 GTDIk 506 (939)
T PRK12902 502 GTDII 506 (939)
T ss_pred CcCEe
Confidence 98875
No 142
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.31 E-value=6.1e-11 Score=108.22 Aligned_cols=122 Identities=21% Similarity=0.316 Sum_probs=101.1
Q ss_pred HHHHHHHHHhhc----------------cCcceEEEecchhhHHHHHHHHhcCC---CeeEEecCCCCHHHHHHHHHHhh
Q 023157 139 KLETLCDLYETL----------------AITQSVIFVNTRRKVDWLTDKMRSRD---HTVSATHGDMDQNTRDIIMREFR 199 (286)
Q Consensus 139 ~~~~l~~~~~~~----------------~~~~~ivf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~ 199 (286)
|+.++.+++... .+++++|||.-+..+.-+-+-|.+.. .....+.|..++.+|.++.++|+
T Consensus 1311 Kl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN 1390 (1549)
T KOG0392|consen 1311 KLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFN 1390 (1549)
T ss_pred hHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhc
Confidence 666777777544 23589999999999998877665542 34458889999999999999999
Q ss_pred cC-CCcEE-EEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCc--ceEEEEeccCc
Q 023157 200 SG-SSRVL-ITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDD 260 (286)
Q Consensus 200 ~~-~~~vl-v~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~ 260 (286)
++ .++|| ++|.+++-|+|+-+++.||+++-.|++-.-+|..-||+|.|++ -.||.++.+..
T Consensus 1391 ~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1391 EDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred CCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 88 57776 5667999999999999999999999999999999999999987 45777777753
No 143
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=6.7e-11 Score=107.64 Aligned_cols=170 Identities=16% Similarity=0.179 Sum_probs=117.2
Q ss_pred cEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhh--ccCcceEEEecchhhH
Q 023157 88 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKV 165 (286)
Q Consensus 88 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivf~~~~~~~ 165 (286)
++-+||+|..-+..++..-|..+.+.+....+. .+......++. ....|...+..-+.. ..+.++||-+.|....
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~Vv~IPTnrP~-~R~D~~D~vy~--t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~S 641 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPI-ARKDKEDLVYK--TKREKYNAVIEEITELSEAGRPVLVGTTSVEIS 641 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCEEECCCCCCc-ceecCCCeEec--CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHH
Confidence 689999999766666555444443333333322 22222222222 222355555444432 3677999999999999
Q ss_pred HHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCC--------CcEEEEccCCCCcchhh
Q 023157 166 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ--------VSLVINYDLPTQPENYL 237 (286)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~--------~~~vi~~~~~~s~~~~~ 237 (286)
+.+++.|...|+...++++.....+-.-+.+.-+. -.|.|||+++++|.||.- ==+||-...|.|.+--.
T Consensus 642 E~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~ 719 (1112)
T PRK12901 642 ELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDR 719 (1112)
T ss_pred HHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHH
Confidence 99999999999988888887554443333333233 358999999999999972 23777788899999999
Q ss_pred hhhcccccCCCcceEEEEeccCcHH
Q 023157 238 HRIGRSGRFGRKGVAINFVTRDDER 262 (286)
Q Consensus 238 Q~~GR~~R~~~~g~~~~~~~~~~~~ 262 (286)
|..||+||.|.+|..-.+++-.|.-
T Consensus 720 QLrGRaGRQGDPGsS~f~lSLEDdL 744 (1112)
T PRK12901 720 QLRGRAGRQGDPGSSQFYVSLEDNL 744 (1112)
T ss_pred HHhcccccCCCCCcceEEEEcccHH
Confidence 9999999999999988888776543
No 144
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.15 E-value=2.8e-10 Score=102.27 Aligned_cols=121 Identities=21% Similarity=0.270 Sum_probs=102.6
Q ss_pred HHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCC---CcEEEEecCCc
Q 023157 139 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS---SRVLITTDLLA 213 (286)
Q Consensus 139 ~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vlv~T~~~~ 213 (286)
|+..+..++... .+++++.|+.......-+-.+|.-.++....+.|.++.++|...++.|+..+ ..+|.+|.+.+
T Consensus 711 KfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstragg 790 (1157)
T KOG0386|consen 711 KFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGG 790 (1157)
T ss_pred HHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccc
Confidence 556666666544 6789999999888888888888888899999999999999999999998655 36789999999
Q ss_pred cCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccC
Q 023157 214 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 214 ~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 259 (286)
.|+|+..++.||++|..|++....|+.-|+.|.|+...|-++.-..
T Consensus 791 lglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 791 LGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred cccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 9999999999999999999999999999999998765544444433
No 145
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.02 E-value=7.3e-09 Score=79.99 Aligned_cols=106 Identities=39% Similarity=0.610 Sum_probs=79.6
Q ss_pred EEEEcCcchHHHHHHHhCCC-cEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEE
Q 023157 13 HACVGGTSVREDQRILQAGV-HVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGV 91 (286)
Q Consensus 13 ~~~~g~~~~~~~~~~~~~~~-~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 91 (286)
....++.........+..+. +++++|++.+.+...........++++|+||+|.+....+...+..++...+...++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~ 165 (201)
T smart00487 86 VGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLL 165 (201)
T ss_pred EEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEE
Confidence 33344444333444444444 99999999999999887767777899999999998875667888888888877899999
Q ss_pred EEeecChhHHHHHHHhcCCCeEEEecC
Q 023157 92 FSATMPPEALEITRKFMNKPVRILVKR 118 (286)
Q Consensus 92 ~SAT~~~~~~~~~~~~~~~~~~~~~~~ 118 (286)
+|||++.+.......+......+....
T Consensus 166 ~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 166 LSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred EecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 999999888787777777555554443
No 146
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.00 E-value=2.6e-08 Score=93.26 Aligned_cols=128 Identities=14% Similarity=0.193 Sum_probs=86.8
Q ss_pred HHHHHhhccCcceEEEecchhhHHHHHHHHhcCC--CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCC
Q 023157 143 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRD--HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ 220 (286)
Q Consensus 143 l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 220 (286)
+..++.. ..++++||++|....+.+++.|.... .....+..+.. .+|.++++.|++++..||+||+.+++|+|+|+
T Consensus 666 i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g 743 (850)
T TIGR01407 666 IIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPG 743 (850)
T ss_pred HHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCC
Confidence 3344333 44799999999999999999997521 12223333333 57889999999999999999999999999997
Q ss_pred Cc--EEEEccCCCC------------------------------cchhhhhhcccccCCCcceEEEEeccC--cHHHHHH
Q 023157 221 VS--LVINYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD--DERMLFD 266 (286)
Q Consensus 221 ~~--~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~~--~~~~~~~ 266 (286)
.. +||+.+.|.. ...+.|.+||+-|...+.=++++.+.+ ...+-..
T Consensus 744 ~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~ 823 (850)
T TIGR01407 744 NGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKR 823 (850)
T ss_pred CceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHH
Confidence 55 6677776531 245688999999975543244444544 3333344
Q ss_pred HHHHhc
Q 023157 267 IQKFYN 272 (286)
Q Consensus 267 ~~~~~~ 272 (286)
+-+.+.
T Consensus 824 ~~~sLp 829 (850)
T TIGR01407 824 FEKSLP 829 (850)
T ss_pred HHHhCC
Confidence 444443
No 147
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=98.90 E-value=2e-08 Score=72.96 Aligned_cols=88 Identities=39% Similarity=0.624 Sum_probs=67.0
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCcc
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 88 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 88 (286)
+..+..+++.............+.+|+++|++.+.+...........++++|+||+|.+....................+
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~ 136 (144)
T cd00046 57 GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQ 136 (144)
T ss_pred CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccce
Confidence 57788888877766666566678999999999999888776555667899999999998776544433233344456788
Q ss_pred EEEEEeec
Q 023157 89 VGVFSATM 96 (286)
Q Consensus 89 ~i~~SAT~ 96 (286)
++++||||
T Consensus 137 ~i~~saTp 144 (144)
T cd00046 137 VLLLSATP 144 (144)
T ss_pred EEEEeccC
Confidence 99999997
No 148
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.90 E-value=2e-08 Score=91.89 Aligned_cols=122 Identities=20% Similarity=0.269 Sum_probs=107.1
Q ss_pred HHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCC--CcEEEEecCCcc
Q 023157 139 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS--SRVLITTDLLAR 214 (286)
Q Consensus 139 ~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~~~~~ 214 (286)
|+..+..+++.. .+++++||+...+....|-..|..+|+....+.|..+.++|...+++|+... ...|++|...+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 677777777644 6789999999999999999999999999999999999999999999998765 467899999999
Q ss_pred CCCCCCCcEEEEccCCCCcchhhhhhcccccCCCc--ceEEEEeccCc
Q 023157 215 GIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDD 260 (286)
Q Consensus 215 Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~ 260 (286)
|||+-+++.||+||..|++..-.|.--|+.|.|+- -..|.+++...
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERT 1388 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccch
Confidence 99999999999999999999999988888888764 56777787763
No 149
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.84 E-value=1.6e-07 Score=88.62 Aligned_cols=122 Identities=11% Similarity=0.137 Sum_probs=86.4
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCC--eeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCC--CcEEEE
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDH--TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ--VSLVIN 226 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~--~~~vi~ 226 (286)
.+++++|+++|.+..+.+++.|+.... ...++.-+++...|.++++.|++++..||++|..+++|||+|+ +.+||+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 446999999999999999999975422 1223333444456789999999988899999999999999996 588898
Q ss_pred ccCCCC------------------------------cchhhhhhcccccCCCcceEEEEeccC--cHHHHHHHHHHhc
Q 023157 227 YDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD--DERMLFDIQKFYN 272 (286)
Q Consensus 227 ~~~~~s------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~~--~~~~~~~~~~~~~ 272 (286)
...|.. ...+.|.+||.-|...+-=++++.+.+ ...+-+.+-+.+.
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 886631 244688899999986542244555544 3333344444443
No 150
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.81 E-value=3.3e-08 Score=74.19 Aligned_cols=112 Identities=20% Similarity=0.337 Sum_probs=75.4
Q ss_pred HHHhhccCcceEEEecchhhHHHHHHHHhcCCC--eeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec--CCccCCCCCC
Q 023157 145 DLYETLAITQSVIFVNTRRKVDWLTDKMRSRDH--TVSATHGDMDQNTRDIIMREFRSGSSRVLITTD--LLARGIDVQQ 220 (286)
Q Consensus 145 ~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~--~~~~Gidi~~ 220 (286)
++++..+ +.++||++|....+.+.+.++.... ...++.. +..+...+++.|++++..||+|+. .+++|+|+|+
T Consensus 3 ~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 3 ELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--EC
T ss_pred HHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCC
Confidence 3444444 8999999999999999999987642 1222222 356788999999999999999998 9999999995
Q ss_pred --CcEEEEccCCCC------------------------------cchhhhhhcccccCCCcceEEEEeccC
Q 023157 221 --VSLVINYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 221 --~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 259 (286)
+++||+.+.|.. .....|.+||+-|...+--++++++..
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 778999998731 134578899999975543344444443
No 151
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.81 E-value=1.9e-07 Score=85.59 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=55.6
Q ss_pred CcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecC
Q 023157 32 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 32 ~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
..|+++||..+...+..+.+++..+..|||||||++.......-+.++.+...+..-+.++||.|.
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 479999999999999999999999999999999998766666666677666666677888888864
No 152
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.79 E-value=3.5e-07 Score=84.93 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=83.6
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCC--CCcEEEEcc
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ--QVSLVINYD 228 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~--~~~~vi~~~ 228 (286)
.+++++|+++|.+..+.+++.|......+ ...|... .+.+++++|++++..||++|+.+++|+|+| +...+|+..
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~k 722 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITR 722 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEec
Confidence 56899999999999999999997654444 4444322 245689999999899999999999999997 356667777
Q ss_pred CCCC------------------------------cchhhhhhcccccCCCc-ceEEEEeccC--cHHHHHHHHHHhc
Q 023157 229 LPTQ------------------------------PENYLHRIGRSGRFGRK-GVAINFVTRD--DERMLFDIQKFYN 272 (286)
Q Consensus 229 ~~~s------------------------------~~~~~Q~~GR~~R~~~~-g~~~~~~~~~--~~~~~~~~~~~~~ 272 (286)
.|.. ...+.|.+||.-|...+ |. +++++++ ...+-+.+.+.+.
T Consensus 723 LPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gv-v~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 723 LPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSA-VLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEE-EEEECCcccccHHHHHHHHhCC
Confidence 6521 25578999999997543 54 5555554 3333344444444
No 153
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.78 E-value=2.2e-07 Score=85.18 Aligned_cols=131 Identities=14% Similarity=0.210 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCCHHHHHHHHHHhhcCCC-cEEEEecCCccCC
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMDQNTRDIIMREFRSGSS-RVLITTDLLARGI 216 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~-~vlv~T~~~~~Gi 216 (286)
....+..+++..+ ++++||++|...++.+++.++..... ....++..+ +...++.|..+.- .++|+|..+++|+
T Consensus 467 ~~~~i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGV 542 (654)
T COG1199 467 LAAYLREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGV 542 (654)
T ss_pred HHHHHHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcc
Confidence 3444555555555 49999999999999999999876542 344445444 3478888876554 8999999999999
Q ss_pred CCCC--CcEEEEccCCC------------------------------CcchhhhhhcccccCCCcceEEEEeccC-cH-H
Q 023157 217 DVQQ--VSLVINYDLPT------------------------------QPENYLHRIGRSGRFGRKGVAINFVTRD-DE-R 262 (286)
Q Consensus 217 di~~--~~~vi~~~~~~------------------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~-~ 262 (286)
|+|+ ..+||+.+.|. ....+.|.+||+-|.-.+.=++++++.+ .. .
T Consensus 543 D~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~ 622 (654)
T COG1199 543 DFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKR 622 (654)
T ss_pred cCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhh
Confidence 9996 57888888763 2356799999999964443334444443 22 2
Q ss_pred HHHHHHHHhch
Q 023157 263 MLFDIQKFYNV 273 (286)
Q Consensus 263 ~~~~~~~~~~~ 273 (286)
.-..+-+.+..
T Consensus 623 y~~~l~~~l~~ 633 (654)
T COG1199 623 YGKLLLDSLPP 633 (654)
T ss_pred HHHHHHHhCCC
Confidence 33344444443
No 154
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.74 E-value=6e-07 Score=82.18 Aligned_cols=114 Identities=21% Similarity=0.340 Sum_probs=79.4
Q ss_pred HHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhh----cCCCcEEEEecCCccCC
Q 023157 141 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR----SGSSRVLITTDLLARGI 216 (286)
Q Consensus 141 ~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vlv~T~~~~~Gi 216 (286)
..+..++. . .+.++|+++|....+.+++.|....-.....++. ..+..+++.|+ .++..||++|..+++||
T Consensus 525 ~~i~~l~~-~-~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGV 599 (697)
T PRK11747 525 EFLPELLE-K-HKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGL 599 (697)
T ss_pred HHHHHHHh-c-CCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccc
Confidence 44445555 3 3458999999999999999987432123444553 34667776665 46788999999999999
Q ss_pred CCCC--CcEEEEccCCCC------------------------------cchhhhhhcccccCCCcceEEEEeccC
Q 023157 217 DVQQ--VSLVINYDLPTQ------------------------------PENYLHRIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 217 di~~--~~~vi~~~~~~s------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 259 (286)
|+|+ +++||+...|.. ...+.|.+||.-|...+-=++++++++
T Consensus 600 D~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 600 DLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred cCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 9996 789999887631 134678889999975442234444444
No 155
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=1.7e-07 Score=79.51 Aligned_cols=236 Identities=17% Similarity=0.209 Sum_probs=152.3
Q ss_pred CCcEEEeCcHHHHHHHhc------CCCCCCCccEEEEehhhHhhccccHHHHHHHHHhC---CcC---------------
Q 023157 31 GVHVVVGTPGRVFDMLRR------QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL---PAK--------------- 86 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~------~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~---~~~--------------- 86 (286)
.+||+||+|=-|.-++-+ ..-+++.+.++|||-+|.+....|. .+..++..+ |.+
T Consensus 385 ~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~~DfSRVR~wyL~ 463 (698)
T KOG2340|consen 385 KSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHDVDFSRVRMWYLD 463 (698)
T ss_pred ccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccCCChhheehheec
Confidence 789999999888766652 2234677899999999988765543 344444443 322
Q ss_pred ------ccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccc-------eeEEEE--ccch----hhHHHH-HHHH
Q 023157 87 ------VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGI-------KQFYVN--VEKE----EWKLET-LCDL 146 (286)
Q Consensus 87 ------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~--~~~~----~~~~~~-l~~~ 146 (286)
.|.+++|+-..+....+...++.+.........-.....+ .|.+.. +.+. +..... +..+
T Consensus 464 ~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~~I 543 (698)
T KOG2340|consen 464 GQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVDKI 543 (698)
T ss_pred cHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHHhh
Confidence 1567777766666666666555443222211111111111 111111 1111 111111 1122
Q ss_pred H---hhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC--CccCCCCCCC
Q 023157 147 Y---ETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL--LARGIDVQQV 221 (286)
Q Consensus 147 ~---~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~--~~~Gidi~~~ 221 (286)
+ ....-..++||.|+.-.--++.+++++.+++..-+|.-.+...-.+.-+.|-.|..+||+-|.- .-+-.++.++
T Consensus 544 mPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGV 623 (698)
T KOG2340|consen 544 MPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGV 623 (698)
T ss_pred chhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecce
Confidence 2 2223346899999999999999999998888888887777777788889999999999999963 3455788999
Q ss_pred cEEEEccCCCCc---chhhhhhcccccCCC----cceEEEEeccCcHHHHHHH
Q 023157 222 SLVINYDLPTQP---ENYLHRIGRSGRFGR----KGVAINFVTRDDERMLFDI 267 (286)
Q Consensus 222 ~~vi~~~~~~s~---~~~~Q~~GR~~R~~~----~g~~~~~~~~~~~~~~~~~ 267 (286)
..||+|.+|..+ ++++.|.+|+.-.|+ ...|.++++..|...+..+
T Consensus 624 k~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~i 676 (698)
T KOG2340|consen 624 KNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENI 676 (698)
T ss_pred eeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHh
Confidence 999999999876 556777777755442 2468889998887766554
No 156
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.62 E-value=3.5e-06 Score=75.97 Aligned_cols=218 Identities=11% Similarity=0.116 Sum_probs=132.2
Q ss_pred CcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccH-------HHHHHHHHhCCcCccEEEEEeecChhHHHHH
Q 023157 32 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK-------DQIYDIFQLLPAKVQVGVFSATMPPEALEIT 104 (286)
Q Consensus 32 ~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~-------~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 104 (286)
.+-++++.+.|.+.. .-.+.+.|+||+||+-.....-+. ..+..+...+....++|++-|++.....+++
T Consensus 122 ~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl 198 (824)
T PF02399_consen 122 YDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFL 198 (824)
T ss_pred cCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHH
Confidence 466777777665443 224566899999999866544222 2222233334556789999999999988888
Q ss_pred HHhcCCC-eEEEecCC-ccccccceeEEEE---------------------------------ccchhhHHHHHHHHHhh
Q 023157 105 RKFMNKP-VRILVKRD-ELTLEGIKQFYVN---------------------------------VEKEEWKLETLCDLYET 149 (286)
Q Consensus 105 ~~~~~~~-~~~~~~~~-~~~~~~i~~~~~~---------------------------------~~~~~~~~~~l~~~~~~ 149 (286)
....+.. +.+....- .......+-.+.. .........+...+...
T Consensus 199 ~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~ 278 (824)
T PF02399_consen 199 ASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLAR 278 (824)
T ss_pred HHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHH
Confidence 8765432 22222110 0000000000000 00001123445555554
Q ss_pred c-cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCC--cEEEE
Q 023157 150 L-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV--SLVIN 226 (286)
Q Consensus 150 ~-~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~--~~vi~ 226 (286)
. .++++-||+.|...++.+++..+.....+..+++..+..+- +. =++.+|++-|+++..|+++.+. +-+.-
T Consensus 279 L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~ 352 (824)
T PF02399_consen 279 LNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFA 352 (824)
T ss_pred HhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhceEEEE
Confidence 4 44566679999999999999888888888888887665522 21 3468999999999999998643 22222
Q ss_pred ccCC----CCcchhhhhhcccccCCCcceEEEEeccC
Q 023157 227 YDLP----TQPENYLHRIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 227 ~~~~----~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 259 (286)
+=-| .+..+..|++||+ |.-....++++++..
T Consensus 353 yvk~~~~gpd~~s~~Q~lgRv-R~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 353 YVKPMSYGPDMVSVYQMLGRV-RSLLDNEIYVYIDAS 388 (824)
T ss_pred EecCCCCCCcHHHHHHHHHHH-HhhccCeEEEEEecc
Confidence 2112 2445689999998 544567788888765
No 157
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.57 E-value=2.6e-07 Score=80.98 Aligned_cols=122 Identities=21% Similarity=0.328 Sum_probs=106.7
Q ss_pred HHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCC-cEEEEecCCccC
Q 023157 139 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS-RVLITTDLLARG 215 (286)
Q Consensus 139 ~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~-~vlv~T~~~~~G 215 (286)
|+..+.+++... .++++++|+...+...-+-++|..++++...+.|.....+|..++.+|...++ -+|++|.+++-|
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 566677777644 67899999999999999999999999999999999999999999999987665 467899999999
Q ss_pred CCCCCCcEEEEccCCCCcchhhhhhcccccCCCc--ceEEEEeccCc
Q 023157 216 IDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRDD 260 (286)
Q Consensus 216 idi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~ 260 (286)
+|+-.++.||+|+..|++.--.|...|+.|.|+- ..||.++.+..
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 9999999999999999999999999999998764 56777776653
No 158
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.53 E-value=1.3e-06 Score=82.94 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=103.2
Q ss_pred HHHHHHHHH---hhccCc--ceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcC--CCcEEEEecC
Q 023157 139 KLETLCDLY---ETLAIT--QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG--SSRVLITTDL 211 (286)
Q Consensus 139 ~~~~l~~~~---~~~~~~--~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~T~~ 211 (286)
|...+..++ ....+. ++++|+.......-+...+...++....++|.++.+.|...++.|+++ ..-+++++.+
T Consensus 693 k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ka 772 (866)
T COG0553 693 KLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKA 772 (866)
T ss_pred HHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecc
Confidence 556666666 233556 999999999999999999999988899999999999999999999986 4456677789
Q ss_pred CccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcce--EEEEeccCc
Q 023157 212 LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV--AINFVTRDD 260 (286)
Q Consensus 212 ~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~~ 260 (286)
++.|+|+-.+++|+++|+.+++....|...|+.|.|+... ++.+.....
T Consensus 773 gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 773 GGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred cccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 9999999999999999999999999999999999887655 555555543
No 159
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.52 E-value=6.3e-06 Score=76.00 Aligned_cols=116 Identities=16% Similarity=0.204 Sum_probs=79.0
Q ss_pred HHHHHhhccCcceEEEecchhhHHHHHHHHhcCCC------eeEEecCCCCHHHHHHHHHHhhc----CCCcEEEEe--c
Q 023157 143 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDH------TVSATHGDMDQNTRDIIMREFRS----GSSRVLITT--D 210 (286)
Q Consensus 143 l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~------~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~T--~ 210 (286)
+.++.+.. .+.++||++|....+.+++.+.+.+. ...++..+-...++..+++.|.. |+-.||+|+ .
T Consensus 514 i~~~~~~~-pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL~av~gG 592 (705)
T TIGR00604 514 LVEFSKII-PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVLLSVAGG 592 (705)
T ss_pred HHHHhhcC-CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 33443433 37899999999999999988775432 11222222222577889999954 456799999 7
Q ss_pred CCccCCCCCC--CcEEEEccCCC-Cc------------------------------chhhhhhcccccCCCcceEEEEec
Q 023157 211 LLARGIDVQQ--VSLVINYDLPT-QP------------------------------ENYLHRIGRSGRFGRKGVAINFVT 257 (286)
Q Consensus 211 ~~~~Gidi~~--~~~vi~~~~~~-s~------------------------------~~~~Q~~GR~~R~~~~g~~~~~~~ 257 (286)
.+++|+|+++ +++||+++.|. ++ ....|.+||+-|...+-=++++++
T Consensus 593 k~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD 672 (705)
T TIGR00604 593 KVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLD 672 (705)
T ss_pred cccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 8999999996 78999999875 11 234688999999754422444444
Q ss_pred cC
Q 023157 258 RD 259 (286)
Q Consensus 258 ~~ 259 (286)
.+
T Consensus 673 ~R 674 (705)
T TIGR00604 673 KR 674 (705)
T ss_pred hh
Confidence 43
No 160
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.49 E-value=1.3e-05 Score=75.87 Aligned_cols=47 Identities=26% Similarity=0.449 Sum_probs=41.9
Q ss_pred hcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccC
Q 023157 199 RSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 246 (286)
Q Consensus 199 ~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 246 (286)
.....++||.++++-.|+|.|.++.+. +|-|...-.++|.+.|+.|.
T Consensus 590 ~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 590 KDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred cCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccC
Confidence 355689999999999999999988876 78888888999999999996
No 161
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.45 E-value=1.8e-05 Score=70.91 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=80.9
Q ss_pred HHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc----CCCcEEEEecCCccCC
Q 023157 141 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS----GSSRVLITTDLLARGI 216 (286)
Q Consensus 141 ~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~T~~~~~Gi 216 (286)
+.+..++.. .+++++|-+.|....+.+++.|...--....+.|+.+ .+...+++|++ |...||++|+.+++|+
T Consensus 460 ~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 460 LSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred HHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 344444443 4468999999999999999999764223445555432 34567888876 4789999999999999
Q ss_pred CC--------C--CCcEEEEccCCCC-------------------------cchhhhhhcccccCCCc---ceEEEEecc
Q 023157 217 DV--------Q--QVSLVINYDLPTQ-------------------------PENYLHRIGRSGRFGRK---GVAINFVTR 258 (286)
Q Consensus 217 di--------~--~~~~vi~~~~~~s-------------------------~~~~~Q~~GR~~R~~~~---g~~~~~~~~ 258 (286)
|+ | .+++||+...|.. ...+.|-+||.-|...+ |.+.++=.+
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 99 3 4889998776632 24578999999998654 544444333
No 162
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.41 E-value=7.7e-07 Score=79.99 Aligned_cols=107 Identities=17% Similarity=0.356 Sum_probs=88.5
Q ss_pred CcceEEEecchhhHHHHHHHHhcC-------CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEE
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSR-------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 224 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~v 224 (286)
.+.+++|.+--.....|..++..+ .+.+...|+.+...++.++.+...+|..+++++|.+++..+.+.++..|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 357889999998888888877553 3567888999999999999999999999999999999999988887777
Q ss_pred EEccCC------------------CCcchhhhhhcccccCCCcceEEEEeccC
Q 023157 225 INYDLP------------------TQPENYLHRIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 225 i~~~~~------------------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 259 (286)
+..+.. .|.....||.||+||. .+|.++.+++..
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~a 774 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRA 774 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHH
Confidence 764421 3567889999999997 789999888764
No 163
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.31 E-value=4.7e-06 Score=75.58 Aligned_cols=119 Identities=20% Similarity=0.241 Sum_probs=96.4
Q ss_pred HHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhc----------------------CCCeeEEecCCCCHHHHHHH
Q 023157 139 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRS----------------------RDHTVSATHGDMDQNTRDII 194 (286)
Q Consensus 139 ~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~----------------------~~~~~~~~~~~~~~~~r~~~ 194 (286)
|+-.|.++++.. -|.+.+||..+......+-.+|.. .|.....+.|......|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 344466666544 467999999998888777666642 13457788899999999999
Q ss_pred HHHhhcCC----CcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEec
Q 023157 195 MREFRSGS----SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT 257 (286)
Q Consensus 195 ~~~f~~~~----~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 257 (286)
.+.|++.. .-.||+|.+++-|+|+-.++.||++|..|+++--.|-+=|+.|.|+...||++-.
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRf 1273 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRF 1273 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhh
Confidence 99998654 2589999999999999999999999999999999999999999998766665543
No 164
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.29 E-value=1.8e-06 Score=78.18 Aligned_cols=166 Identities=17% Similarity=0.183 Sum_probs=105.5
Q ss_pred cEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHh--hccCcceEEEecchhhH
Q 023157 88 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE--TLAITQSVIFVNTRRKV 165 (286)
Q Consensus 88 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ivf~~~~~~~ 165 (286)
++.+||+|..-+..++..-+......+....+-. +..-... .......|...+...+. ...+.++||-+.+....
T Consensus 366 kl~gmTGTa~te~~EF~~iY~l~vv~iPTnrp~~-R~D~~D~--vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~S 442 (822)
T COG0653 366 KLAGMTGTADTEEEEFDVIYGLDVVVIPTNRPII-RLDEPDL--VYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKS 442 (822)
T ss_pred hhcCCCCcchhhhhhhhhccCCceeeccCCCccc-CCCCccc--cccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecc
Confidence 6788888876665555544444444333333322 1111112 22233335555554443 33778999999999999
Q ss_pred HHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCC-cEEEEecCCccCCCCCCCcE-----------EEEccCCCCc
Q 023157 166 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS-RVLITTDLLARGIDVQQVSL-----------VINYDLPTQP 233 (286)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~-~vlv~T~~~~~Gidi~~~~~-----------vi~~~~~~s~ 233 (286)
+.+.+.|.+.|+...++.+.-...+-..+.. .|.. -|-|||+++++|-|+.--.. ||=..-..|.
T Consensus 443 E~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESR 519 (822)
T COG0653 443 ELLSKLLRKAGIPHNVLNAKNHAREAEIIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESR 519 (822)
T ss_pred hhHHHHHHhcCCCceeeccccHHHHHHHHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhh
Confidence 9999999999998888888765444333333 3433 47899999999999874332 2223334444
Q ss_pred chhhhhhcccccCCCcceEEEEeccC
Q 023157 234 ENYLHRIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 234 ~~~~Q~~GR~~R~~~~g~~~~~~~~~ 259 (286)
+=--|..||+||.|.+|..-.+++-.
T Consensus 520 RIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 520 RIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred HHHHHhhcccccCCCcchhhhhhhhH
Confidence 44459999999999988765555543
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.19 E-value=5.5e-06 Score=59.14 Aligned_cols=67 Identities=15% Similarity=0.055 Sum_probs=40.3
Q ss_pred CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhC-CcCccEEEEEeecChh
Q 023157 31 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSATMPPE 99 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~ 99 (286)
+..|-++|...+.+.+.+ +....++++||+||||.....+ -.....+.... ....+++++|||||-.
T Consensus 72 ~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~s-IA~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 72 SSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTS-IAARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp SSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHH-HHHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred CCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHH-HhhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 456778888888777765 5667889999999999643332 12222222111 2346799999999854
No 166
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.09 E-value=3.9e-06 Score=63.96 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=43.5
Q ss_pred hCCCcEEEeCcHHHHHHHhcCC-----------CCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecC
Q 023157 29 QAGVHVVVGTPGRVFDMLRRQS-----------LRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 29 ~~~~~iii~Tp~~l~~~~~~~~-----------~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
....+++++|.+.+........ ......++||+||+|+.....- ...+.. .++..+++|||||.
T Consensus 109 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 109 NNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDSS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp BSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHHHH---HHHHHH--SSCCEEEEEESS-S
T ss_pred cccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCHHH---HHHHHc--CCCCeEEEEEeCcc
Confidence 4478999999999988765321 2234568999999998765541 333333 45778999999986
No 167
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.04 E-value=5.6e-05 Score=66.77 Aligned_cols=104 Identities=19% Similarity=0.259 Sum_probs=88.2
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhh--cCCCcEE-EEecCCccCCCCCCCcEEEEc
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR--SGSSRVL-ITTDLLARGIDVQQVSLVINY 227 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~--~~~~~vl-v~T~~~~~Gidi~~~~~vi~~ 227 (286)
...+++|...=.....-+...+++.|+....++|.....+|..+++.|+ .|...|+ ++-.+.+.|+|+-..+|++.+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 4457777766666677778899999999999999999999999999996 4445665 455788999999999999999
Q ss_pred cCCCCcchhhhhhcccccCCCcceEEE
Q 023157 228 DLPTQPENYLHRIGRSGRFGRKGVAIN 254 (286)
Q Consensus 228 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~ 254 (286)
|..|++.--.|...|+.|.|+...+++
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEE
Confidence 999999999999999999998766553
No 168
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.02 E-value=6.7e-05 Score=54.38 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=51.0
Q ss_pred EEecCCCCHHHHHHHHHHhhcCC-CcEEEEecCCccCCCCCC--CcEEEEccCCCC------------------------
Q 023157 180 SATHGDMDQNTRDIIMREFRSGS-SRVLITTDLLARGIDVQQ--VSLVINYDLPTQ------------------------ 232 (286)
Q Consensus 180 ~~~~~~~~~~~r~~~~~~f~~~~-~~vlv~T~~~~~Gidi~~--~~~vi~~~~~~s------------------------ 232 (286)
.++..+....+...+++.|++.. ..||+++..+++|+|+|+ +++||+.+.|..
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 34444455556788999997654 379999988999999996 578888887631
Q ss_pred -------cchhhhhhcccccCCCc
Q 023157 233 -------PENYLHRIGRSGRFGRK 249 (286)
Q Consensus 233 -------~~~~~Q~~GR~~R~~~~ 249 (286)
...+.|.+||+-|...+
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~D 128 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGAND 128 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcCc
Confidence 14457888999997544
No 169
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.01 E-value=4.9e-05 Score=55.18 Aligned_cols=93 Identities=13% Similarity=0.214 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCC---eeEEecCCCCHHHHHHHHHHhhcCCC---cEEEEecC--CccCCCCCC--CcEEEEccCCCC--
Q 023157 165 VDWLTDKMRSRDH---TVSATHGDMDQNTRDIIMREFRSGSS---RVLITTDL--LARGIDVQQ--VSLVINYDLPTQ-- 232 (286)
Q Consensus 165 ~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~---~vlv~T~~--~~~Gidi~~--~~~vi~~~~~~s-- 232 (286)
.+.+++.+++.+. ...++..+....+...+++.|++... .||+++.. +++|+|+|+ +++||+.+.|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 4455555654432 22233333333344688888876543 69999987 999999996 678999887631
Q ss_pred -----------------------------cchhhhhhcccccCCCcceEEEEec
Q 023157 233 -----------------------------PENYLHRIGRSGRFGRKGVAINFVT 257 (286)
Q Consensus 233 -----------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~ 257 (286)
.....|.+||+-|...+--++++++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1345788899999754422344443
No 170
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.70 E-value=0.00039 Score=59.31 Aligned_cols=108 Identities=18% Similarity=0.274 Sum_probs=92.8
Q ss_pred cceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcC-CCcE-EEEecCCccCCCCCCCcEEEEccCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG-SSRV-LITTDLLARGIDVQQVSLVINYDLP 230 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~v-lv~T~~~~~Gidi~~~~~vi~~~~~ 230 (286)
.|.|||.........+-=.|.+.|.++..+-|+|++..|...++.|.+. .+.| |++-.+++..+|+-.+.+|..+|+=
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 4889999988888888888999999999999999999999999999764 4555 4566788889999999999999999
Q ss_pred CCcchhhhhhcccccCCCc--ceEEEEeccCc
Q 023157 231 TQPENYLHRIGRSGRFGRK--GVAINFVTRDD 260 (286)
Q Consensus 231 ~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~ 260 (286)
|+++--.|.-.|..|.|+- -+++.|+.+..
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 9999999999999998864 56777776653
No 171
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.62 E-value=0.00025 Score=56.95 Aligned_cols=67 Identities=21% Similarity=0.334 Sum_probs=54.0
Q ss_pred HHHHHHhhcCCCcEEEEecCCccCCCCCCC--------cEEEEccCCCCcchhhhhhcccccCCCc-ceEEEEecc
Q 023157 192 DIIMREFRSGSSRVLITTDLLARGIDVQQV--------SLVINYDLPTQPENYLHRIGRSGRFGRK-GVAINFVTR 258 (286)
Q Consensus 192 ~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~--------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~-g~~~~~~~~ 258 (286)
....+.|.+|+..|+|-|++++.|+.+... ++-|...+|||....+|..||+.|.++. +..|.++..
T Consensus 51 ~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t 126 (278)
T PF13871_consen 51 IAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVT 126 (278)
T ss_pred HHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeec
Confidence 456778999999999999999999988743 2446788999999999999999999764 444554444
No 172
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=97.48 E-value=0.00013 Score=60.32 Aligned_cols=88 Identities=15% Similarity=0.110 Sum_probs=49.6
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHh---cCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCc
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLR---RQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA 85 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~---~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~ 85 (286)
..++..+.|...............+++|+|.+.+..... ...+...++++||+||+|.+-+.. ......+. .+.
T Consensus 85 ~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~-s~~~~~l~-~l~- 161 (299)
T PF00176_consen 85 SLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKD-SKRYKALR-KLR- 161 (299)
T ss_dssp TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTT-SHHHHHHH-CCC-
T ss_pred cccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccc-cccccccc-ccc-
Confidence 457777777652222222223468999999999881100 011112337999999999885443 23333333 343
Q ss_pred CccEEEEEeecChh
Q 023157 86 KVQVGVFSATMPPE 99 (286)
Q Consensus 86 ~~~~i~~SAT~~~~ 99 (286)
....+++||||..+
T Consensus 162 ~~~~~lLSgTP~~n 175 (299)
T PF00176_consen 162 ARYRWLLSGTPIQN 175 (299)
T ss_dssp ECEEEEE-SS-SSS
T ss_pred cceEEeeccccccc
Confidence 66789999998644
No 173
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.26 E-value=0.0016 Score=58.74 Aligned_cols=116 Identities=17% Similarity=0.251 Sum_probs=90.9
Q ss_pred CcceEEEecchhhHHHHHHHHhcCC------------------CeeEEecCCCCHHHHHHHHHHhhcCC---CcEEEEec
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRD------------------HTVSATHGDMDQNTRDIIMREFRSGS---SRVLITTD 210 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~------------------~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vlv~T~ 210 (286)
+.++|||..+......+.+.+.++. .+...+.|..+.++|.+.+.+|++.. .-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 3489999999888887777776531 23446678889999999999998643 35789999
Q ss_pred CCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHH
Q 023157 211 LLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 267 (286)
Q Consensus 211 ~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 267 (286)
....|+|+-..+.++++++.|++.--.|.+-|+.|-|+...||++---.|....++|
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkI 855 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKI 855 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHH
Confidence 999999999999999999999999999999999998877666665544444444433
No 174
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.89 E-value=0.01 Score=54.22 Aligned_cols=89 Identities=20% Similarity=0.193 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcC-C-CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCcc
Q 023157 139 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR-D-HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 214 (286)
Q Consensus 139 ~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~ 214 (286)
|.+.+.+++... .+..+||.++....+..+.+.|+.+ + ..+..+|+++++.+|.+.+....+|+.+|+|+|..+ .
T Consensus 173 KTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA-v 251 (665)
T PRK14873 173 WARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA-V 251 (665)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee-E
Confidence 666666666533 4668999999999999999999865 3 579999999999999999999999999999999863 4
Q ss_pred CCCCCCCcEEEEcc
Q 023157 215 GIDVQQVSLVINYD 228 (286)
Q Consensus 215 Gidi~~~~~vi~~~ 228 (286)
-.-+++...||+.+
T Consensus 252 FaP~~~LgLIIvdE 265 (665)
T PRK14873 252 FAPVEDLGLVAIWD 265 (665)
T ss_pred EeccCCCCEEEEEc
Confidence 45567888888755
No 175
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.75 E-value=0.014 Score=54.08 Aligned_cols=76 Identities=18% Similarity=0.283 Sum_probs=65.0
Q ss_pred cCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-CccCCCCCCCcEEE
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-LARGIDVQQVSLVI 225 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gidi~~~~~vi 225 (286)
.+.++++.+|++.-|...++.+++ .+..+..++|+++..+|..+++.+.+|+.+|+|+|.. +...+.++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 456899999999998888777654 4689999999999999999999999999999999974 45567788888887
Q ss_pred E
Q 023157 226 N 226 (286)
Q Consensus 226 ~ 226 (286)
+
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 5
No 176
>PRK05580 primosome assembly protein PriA; Validated
Probab=96.71 E-value=0.021 Score=52.76 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=65.6
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC-CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL 229 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~ 229 (286)
.+.+++|.+|++..+..+++.|++. +..+..+||+++..+|.+.+....+|+.+|+|+|...- -..++++..||+-+.
T Consensus 189 ~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 189 QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEECC
Confidence 3568999999999999999999764 77899999999999999999999999999999997432 255668888876554
No 177
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.68 E-value=0.013 Score=52.10 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=64.4
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC-CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEcc
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 228 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~ 228 (286)
.+.++++.+|++.-+..+++.|++. +..+..+|++++..+|.+.+....+|+.+|+|+|...- -..++++..||+-.
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH-cCcccCCCEEEEEC
Confidence 3568999999999999999999764 67889999999999999999999999999999997532 24566788887644
No 178
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=96.61 E-value=0.0036 Score=50.71 Aligned_cols=68 Identities=18% Similarity=0.122 Sum_probs=44.1
Q ss_pred CCcEEEeCcHHHHHHHhc-----CCCC-----C-CCc-cEEEEehhhHhhcccc--------HHHHHHHHHhCCcCccEE
Q 023157 31 GVHVVVGTPGRVFDMLRR-----QSLR-----P-DYI-KMFVLDEADEMLSRGF--------KDQIYDIFQLLPAKVQVG 90 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~-----~~~~-----~-~~~-~~iIiDE~h~~~~~~~--------~~~~~~i~~~~~~~~~~i 90 (286)
+..|+++|...|...... .++. + .++ .+||+||||...+... +..+..+.+.+ ++.+++
T Consensus 136 ~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvv 214 (303)
T PF13872_consen 136 KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVV 214 (303)
T ss_pred CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEE
Confidence 456999999888766432 1110 0 112 5999999998765532 23445555666 477899
Q ss_pred EEEeecChh
Q 023157 91 VFSATMPPE 99 (286)
Q Consensus 91 ~~SAT~~~~ 99 (286)
.+|||-..+
T Consensus 215 Y~SATgase 223 (303)
T PF13872_consen 215 YASATGASE 223 (303)
T ss_pred EecccccCC
Confidence 999997643
No 179
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=96.29 E-value=0.0016 Score=60.50 Aligned_cols=183 Identities=16% Similarity=0.157 Sum_probs=97.8
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHh--cCCCCCCCccEEEEehhhHhhccccHHHHHHHH------
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLR--RQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF------ 80 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~--~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~------ 80 (286)
|+++..++|+...+. ..+ ..++++|+||+++....+ ...-.+++++++|+||.|++... .++.+..+.
T Consensus 1001 g~k~ie~tgd~~pd~--~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~ 1076 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPDV--KAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYI 1076 (1230)
T ss_pred CceeEeccCccCCCh--hhe-ecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccC
Confidence 888999999876652 111 257899999999988877 35556788999999999976543 233332221
Q ss_pred -HhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEE------Eccchhh-HHHHHHHHHhhccC
Q 023157 81 -QLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYV------NVEKEEW-KLETLCDLYETLAI 152 (286)
Q Consensus 81 -~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~~-~~~~l~~~~~~~~~ 152 (286)
...++..+.+++|.-+. +...+..+....+. ........+.....++. +++.... .......+....+.
T Consensus 1077 s~~t~~~vr~~glsta~~-na~dla~wl~~~~~--~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~ 1153 (1230)
T KOG0952|consen 1077 SSQTEEPVRYLGLSTALA-NANDLADWLNIKDM--YNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPI 1153 (1230)
T ss_pred ccccCcchhhhhHhhhhh-ccHHHHHHhCCCCc--CCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCC
Confidence 22234566666654432 33344434333222 12222222222222222 2222211 22445555556677
Q ss_pred cceEEEecchhhHHHHH----HHHhcCCCeeEEecCCCCHHHHHHHHHHhhc
Q 023157 153 TQSVIFVNTRRKVDWLT----DKMRSRDHTVSATHGDMDQNTRDIIMREFRS 200 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~----~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 200 (286)
.+++||+.++.+...-+ ..+.........++.+ ..+-..++...++
T Consensus 1154 ~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d 1203 (1230)
T KOG0952|consen 1154 KPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRD 1203 (1230)
T ss_pred CceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcc
Confidence 89999999877654433 3333333333444433 3444444444433
No 180
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.25 E-value=0.034 Score=51.06 Aligned_cols=76 Identities=17% Similarity=0.266 Sum_probs=64.2
Q ss_pred cCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-CccCCCCCCCcEEE
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-LARGIDVQQVSLVI 225 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gidi~~~~~vi 225 (286)
.+.++++.+|++.-|...++.+++ .|..+..++|+++..++..+++...+|+.+|+|+|.. +...+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 456899999999999988876654 3789999999999999999999999999999999974 44457777888887
Q ss_pred E
Q 023157 226 N 226 (286)
Q Consensus 226 ~ 226 (286)
+
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 5
No 181
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.21 E-value=0.023 Score=52.21 Aligned_cols=87 Identities=21% Similarity=0.266 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcC-CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccC
Q 023157 139 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 215 (286)
Q Consensus 139 ~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 215 (286)
|.+.+.+++... .|..+||-+|.+.....+.+.|+.+ |..+.++|+++++.+|...+.+..+|+.+|+|+|..+ --
T Consensus 230 KTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA-lF 308 (730)
T COG1198 230 KTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA-LF 308 (730)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechh-hc
Confidence 555666555533 5568999999999988888888765 7899999999999999999999999999999999763 33
Q ss_pred CCCCCCcEEEE
Q 023157 216 IDVQQVSLVIN 226 (286)
Q Consensus 216 idi~~~~~vi~ 226 (286)
.-++++..||+
T Consensus 309 ~Pf~~LGLIIv 319 (730)
T COG1198 309 LPFKNLGLIIV 319 (730)
T ss_pred CchhhccEEEE
Confidence 45667787775
No 182
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.21 E-value=0.018 Score=53.88 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC----C-CeeEE-ecCCCCHHHHHHHHHHhhcCCCcEEEEecC
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR----D-HTVSA-THGDMDQNTRDIIMREFRSGSSRVLITTDL 211 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~----~-~~~~~-~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 211 (286)
-.-.+..++-...+.++.+.+||..-+.+.++.|++. + ..+.. +|+.++..++.++++++.+|+.+|||+|..
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 3445556666667789999999999888888888653 2 33333 999999999999999999999999999963
No 183
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=95.97 E-value=0.015 Score=46.24 Aligned_cols=57 Identities=32% Similarity=0.459 Sum_probs=46.7
Q ss_pred ceEEEEEcCc-chHHHHHHHhC-CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhH
Q 023157 10 VKVHACVGGT-SVREDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 66 (286)
Q Consensus 10 ~~~~~~~g~~-~~~~~~~~~~~-~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~ 66 (286)
.+|+.+.... ..+++...+.. ..+|.|+||+++..++..+.+.++++..||+|--|.
T Consensus 154 ~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ivlD~s~~ 212 (252)
T PF14617_consen 154 CKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKRIVLDWSYL 212 (252)
T ss_pred chHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeEEEEcCCcc
Confidence 3445555544 67777887774 799999999999999999999999999999998773
No 184
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=95.85 E-value=0.01 Score=47.83 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=45.6
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHH-HHhcCCC------CCCCccEEEEehhhHhh
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD-MLRRQSL------RPDYIKMFVLDEADEML 68 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~-~~~~~~~------~~~~~~~iIiDE~h~~~ 68 (286)
+.+.+.+|+.+...+++.+..+....+. ++|+.+|...+.- +++.+.. ....++++||||++.+.
T Consensus 139 ~~~y~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 139 RPFYEFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHHHHHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHHHHHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 4567789999999999988766666553 5799999988754 4443211 23567899999999765
No 185
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.80 E-value=0.071 Score=50.88 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=64.2
Q ss_pred cCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-CCccCCCCCCCcEEE
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 225 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gidi~~~~~vi 225 (286)
.+.+++|.+|++.-|...++.+++ .+..+..+++..+..++.++++.+..|+.+|+|+|. .+...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 456899999999999998887765 367788999999999999999999999999999997 344567788888887
Q ss_pred E
Q 023157 226 N 226 (286)
Q Consensus 226 ~ 226 (286)
+
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 5
No 186
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.79 E-value=0.1 Score=47.09 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=63.8
Q ss_pred cCcceEEEecchhhH----HHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-CccCCCCCCCcEEE
Q 023157 151 AITQSVIFVNTRRKV----DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-LARGIDVQQVSLVI 225 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~----~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gidi~~~~~vi 225 (286)
.|.++.+-+||.--| ..+.++|...|+.+.++.|.+....|.++++...+|+++++|+|.+ +...+++.++..||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 556889999995544 4555566667899999999999999999999999999999999975 56678888888887
Q ss_pred E
Q 023157 226 N 226 (286)
Q Consensus 226 ~ 226 (286)
+
T Consensus 390 i 390 (677)
T COG1200 390 I 390 (677)
T ss_pred E
Confidence 5
No 187
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=95.76 E-value=0.021 Score=54.15 Aligned_cols=88 Identities=18% Similarity=0.252 Sum_probs=61.6
Q ss_pred ccCceEEEEEcCcchHHHHHH-HhC--CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhC
Q 023157 7 YLGVKVHACVGGTSVREDQRI-LQA--GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL 83 (286)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~-~~~--~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~ 83 (286)
+-|.++..++|......+++. |.+ ..+|.|++...+.+-+.. +...++.++|+||+|.+.++. ......+++..
T Consensus 688 cPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A--FkrkrWqyLvLDEaqnIKnfk-sqrWQAllnfn 764 (1958)
T KOG0391|consen 688 CPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA--FKRKRWQYLVLDEAQNIKNFK-SQRWQALLNFN 764 (1958)
T ss_pred CCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH--HHhhccceeehhhhhhhcchh-HHHHHHHhccc
Confidence 458899999998876665543 322 578888888777665442 233446899999999998875 45555555543
Q ss_pred CcCccEEEEEeecChh
Q 023157 84 PAKVQVGVFSATMPPE 99 (286)
Q Consensus 84 ~~~~~~i~~SAT~~~~ 99 (286)
.-+.+++|+|+-.+
T Consensus 765 --sqrRLLLtgTPLqN 778 (1958)
T KOG0391|consen 765 --SQRRLLLTGTPLQN 778 (1958)
T ss_pred --hhheeeecCCchhh
Confidence 35689999998644
No 188
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.65 E-value=0.98 Score=41.06 Aligned_cols=113 Identities=14% Similarity=0.219 Sum_probs=73.0
Q ss_pred HHHHHhhccCcceEEEecchhhHHHHHHHHhcCCC-------eeEEecCCCCHHHHHHHHHHhh----cCCCcEEEEe--
Q 023157 143 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDH-------TVSATHGDMDQNTRDIIMREFR----SGSSRVLITT-- 209 (286)
Q Consensus 143 l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~~r~~~~~~f~----~~~~~vlv~T-- 209 (286)
+.++....+ +-+++|++|......+.+.....|+ ....+-...+ -..+++.|. +|.-.+|+|.
T Consensus 621 ~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVG 696 (821)
T KOG1133|consen 621 ISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVG 696 (821)
T ss_pred HHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEec
Confidence 444444446 7899999999888888887776543 2222223323 244555553 4555677666
Q ss_pred cCCccCCCCCC--CcEEEEccCCCC--------------------------------cchhhhhhcccccCCCcceEEEE
Q 023157 210 DLLARGIDVQQ--VSLVINYDLPTQ--------------------------------PENYLHRIGRSGRFGRKGVAINF 255 (286)
Q Consensus 210 ~~~~~Gidi~~--~~~vi~~~~~~s--------------------------------~~~~~Q~~GR~~R~~~~g~~~~~ 255 (286)
.-+++|||+.+ .++|+.+|.|.. ....-|-+|||-|.-++=-++.+
T Consensus 697 GKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~L 776 (821)
T KOG1133|consen 697 GKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYL 776 (821)
T ss_pred cccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEE
Confidence 56899999996 789999998742 01235888999997555445555
Q ss_pred eccC
Q 023157 256 VTRD 259 (286)
Q Consensus 256 ~~~~ 259 (286)
++..
T Consensus 777 lD~R 780 (821)
T KOG1133|consen 777 LDKR 780 (821)
T ss_pred ehhh
Confidence 5544
No 189
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=95.56 E-value=0.0052 Score=60.35 Aligned_cols=93 Identities=26% Similarity=0.409 Sum_probs=74.7
Q ss_pred ceEEEecchhhHHHHHHHHhcCC-CeeEEecCCCC-----------HHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCC
Q 023157 154 QSVIFVNTRRKVDWLTDKMRSRD-HTVSATHGDMD-----------QNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 221 (286)
Q Consensus 154 ~~ivf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~-----------~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~ 221 (286)
..++|++.+..+....+.+++.. ..+..+.|.+. ...+.+++..|...+.++|++|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 36889999999988888887642 22333444331 1235688889999999999999999999999999
Q ss_pred cEEEEccCCCCcchhhhhhcccccC
Q 023157 222 SLVINYDLPTQPENYLHRIGRSGRF 246 (286)
Q Consensus 222 ~~vi~~~~~~s~~~~~Q~~GR~~R~ 246 (286)
+.++.++.|...+.|+|..||+-+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999998553
No 190
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.29 E-value=0.076 Score=51.90 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=62.9
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-CccCCCCCCCcEEE
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-LARGIDVQQVSLVI 225 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gidi~~~~~vi 225 (286)
.+.+++|.+|++.-|...++.+++. +..+..+++..+..++.++++.+.+|+.+|+|+|.. +...+++.++..+|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4568999999999999988877653 467788999999999999999999999999999963 44456677888887
Q ss_pred E
Q 023157 226 N 226 (286)
Q Consensus 226 ~ 226 (286)
+
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 5
No 191
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.99 E-value=0.045 Score=47.27 Aligned_cols=84 Identities=19% Similarity=0.152 Sum_probs=53.8
Q ss_pred cCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCC-------------CCCC--ccEEEEehhhHhhcccc
Q 023157 8 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-------------RPDY--IKMFVLDEADEMLSRGF 72 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~-------------~~~~--~~~iIiDE~h~~~~~~~ 72 (286)
-..++..+||......-++. .++|++++|...+-+.+++... .+.+ +--||+||||.+.+...
T Consensus 256 gslkv~~YhG~~R~~nikel--~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~s 333 (791)
T KOG1002|consen 256 GSLKVYIYHGAKRDKNIKEL--MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQS 333 (791)
T ss_pred CceEEEEEecccccCCHHHh--hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccc
Confidence 35678888886543332222 2589999999999888875221 1222 45799999998876642
Q ss_pred --HHHHHHHHHhCCcCccEEEEEeecCh
Q 023157 73 --KDQIYDIFQLLPAKVQVGVFSATMPP 98 (286)
Q Consensus 73 --~~~~~~i~~~~~~~~~~i~~SAT~~~ 98 (286)
...+..+. .....++|+||-.
T Consensus 334 nTArAV~~L~-----tt~rw~LSGTPLQ 356 (791)
T KOG1002|consen 334 NTARAVFALE-----TTYRWCLSGTPLQ 356 (791)
T ss_pred cHHHHHHhhH-----hhhhhhccCCcch
Confidence 23333332 3446899999863
No 192
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.96 E-value=0.12 Score=49.50 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=64.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-CCccCCCCCCCcEEE
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 225 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gidi~~~~~vi 225 (286)
.+.++.|.+||.--|+.-++.+++ ..+++..+..-.+.+++..+++...+|+++|+|+|- .+..++-+.++-.+|
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlI 721 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLI 721 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCCeEE
Confidence 446799999997777776666655 467888999999999999999999999999999995 688889999999888
Q ss_pred E
Q 023157 226 N 226 (286)
Q Consensus 226 ~ 226 (286)
+
T Consensus 722 I 722 (1139)
T COG1197 722 I 722 (1139)
T ss_pred E
Confidence 5
No 193
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=94.83 E-value=0.03 Score=50.81 Aligned_cols=40 Identities=13% Similarity=0.019 Sum_probs=31.0
Q ss_pred CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhc
Q 023157 30 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 69 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 69 (286)
..+||+|++...|+..++...-.+...+.+||||||++.+
T Consensus 181 ~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 181 RRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred ccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHH
Confidence 5789999999988876654322445579999999998764
No 194
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=94.35 E-value=0.23 Score=44.47 Aligned_cols=68 Identities=19% Similarity=0.367 Sum_probs=55.2
Q ss_pred eEEEecchhhHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccC-CCCCCCcE
Q 023157 155 SVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARG-IDVQQVSL 223 (286)
Q Consensus 155 ~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-idi~~~~~ 223 (286)
+||.+||+.-|..+++.+... +..+..++|+++...+...++. | .+|+|||+ .+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999999877653 4678999999998877655554 6 99999996 45555 88889999
Q ss_pred EEE
Q 023157 224 VIN 226 (286)
Q Consensus 224 vi~ 226 (286)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 885
No 195
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.20 E-value=0.022 Score=43.01 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=26.3
Q ss_pred CCCcEEEeCcHHHHHHHhcCC---CCCCCccEEEEehhhHhhcc
Q 023157 30 AGVHVVVGTPGRVFDMLRRQS---LRPDYIKMFVLDEADEMLSR 70 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~ 70 (286)
..+||+|++..-+++-..... +.+. -.+|||||||.+.+.
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~-~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLK-DNIVIFDEAHNLEDA 160 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CC-CEEEEETTGGGCGGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhcccccc-CcEEEEecccchHHH
Confidence 468999999988876533222 2233 369999999987643
No 196
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.07 E-value=0.026 Score=50.69 Aligned_cols=83 Identities=17% Similarity=0.107 Sum_probs=48.6
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHH----HHhc----CCCCCCCccEEEEehhhHhhccc--cHHHHHH
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD----MLRR----QSLRPDYIKMFVLDEADEMLSRG--FKDQIYD 78 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~----~~~~----~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~~ 78 (286)
-++|..+||....+-..+.+ ..+||+|+|..-..+ -... +.+..-.+..||+||||.+-+.. ....+..
T Consensus 410 ~LsV~~~HG~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~ 488 (901)
T KOG4439|consen 410 ALSVYLYHGPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCK 488 (901)
T ss_pred ceEEEEecCCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHH
Confidence 36788888876533333333 458999999865544 1111 11111225789999999887654 2233444
Q ss_pred HHHhCCcCccEEEEEeecC
Q 023157 79 IFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 79 i~~~~~~~~~~i~~SAT~~ 97 (286)
+... -.-++|+||-
T Consensus 489 L~a~-----~RWclTGTPi 502 (901)
T KOG4439|consen 489 LSAK-----SRWCLTGTPI 502 (901)
T ss_pred Hhhc-----ceeecccCcc
Confidence 4332 2578888875
No 197
>PRK14701 reverse gyrase; Provisional
Probab=94.01 E-value=0.28 Score=49.72 Aligned_cols=61 Identities=18% Similarity=0.257 Sum_probs=53.4
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC------CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 211 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 211 (286)
++.+++|.+|++.-+...++.++.. +..+..+||+++..++...++.+.+|+.+|+|+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999998888762 456788999999999999999999999999999974
No 198
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.93 E-value=1.1 Score=39.76 Aligned_cols=75 Identities=5% Similarity=0.139 Sum_probs=61.6
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-CccC------C-CCCCCcE
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-LARG------I-DVQQVSL 223 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~G------i-di~~~~~ 223 (286)
++.++|.+|++.-+......|...|+.+..++++.+..++..++.....|+.+++++|+. +... + ....+..
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~ 130 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITL 130 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCE
Confidence 457999999999999888899989999999999999999999999999999999999963 2111 2 4456777
Q ss_pred EEE
Q 023157 224 VIN 226 (286)
Q Consensus 224 vi~ 226 (286)
+|+
T Consensus 131 iVi 133 (470)
T TIGR00614 131 IAV 133 (470)
T ss_pred EEE
Confidence 765
No 199
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=93.90 E-value=2.1 Score=32.97 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=51.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----Ccc-CCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----LAR-GIDVQQ 220 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~-Gidi~~ 220 (286)
.+.+++|.++++..+...++.++.. +..+..++|+.+..+....+. +...|+|+|.. +.. -.++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4568999999999888877666443 667888899887655543332 57789999951 222 266778
Q ss_pred CcEEEEcc
Q 023157 221 VSLVINYD 228 (286)
Q Consensus 221 ~~~vi~~~ 228 (286)
++++|+=.
T Consensus 144 l~~lIvDE 151 (203)
T cd00268 144 VKYLVLDE 151 (203)
T ss_pred CCEEEEeC
Confidence 88887533
No 200
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.60 E-value=0.76 Score=40.65 Aligned_cols=90 Identities=18% Similarity=0.231 Sum_probs=68.1
Q ss_pred CcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccC-CCCCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARG-IDVQQV 221 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-idi~~~ 221 (286)
+..++|.+||++-|..+.+.+.+. +.....++|+.+...+..-+++ .++|+|||+ .++.| +|+..+
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l~~v 240 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNLSRV 240 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccccce
Confidence 446999999999999998888765 3457888999887776655553 578999995 56666 888899
Q ss_pred cEEEE--------ccCCCCcchhhhhhccccc
Q 023157 222 SLVIN--------YDLPTQPENYLHRIGRSGR 245 (286)
Q Consensus 222 ~~vi~--------~~~~~s~~~~~Q~~GR~~R 245 (286)
.++|. .++-..+..+++.++|..|
T Consensus 241 ~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 241 TYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 99985 4444556777777777766
No 201
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.50 E-value=0.011 Score=53.80 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=87.7
Q ss_pred cceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCC-CcE-EEEecCCccCCCCCCCcEEEEccCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS-SRV-LITTDLLARGIDVQQVSLVINYDLP 230 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~v-lv~T~~~~~Gidi~~~~~vi~~~~~ 230 (286)
.+++||+.-...+..+...+...+.....+.|.|+...|.+.+..|..+. ..+ +++..+...|+|+-.+.+|+..|+=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 38999999999998888888888888889999999999999999998543 344 4666899999999999999999999
Q ss_pred CCcchhhhhhcccccCCCcceEEE
Q 023157 231 TQPENYLHRIGRSGRFGRKGVAIN 254 (286)
Q Consensus 231 ~s~~~~~Q~~GR~~R~~~~g~~~~ 254 (286)
+++..--|.+-|+.|.|+...+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999887655443
No 202
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.36 E-value=0.071 Score=48.77 Aligned_cols=62 Identities=24% Similarity=0.401 Sum_probs=49.4
Q ss_pred HHHhhcCCCcEEEEecCCccCCCCCCCcEE--------EEccCCCCcchhhhhhcccccCCCc-ceEEEEe
Q 023157 195 MREFRSGSSRVLITTDLLARGIDVQQVSLV--------INYDLPTQPENYLHRIGRSGRFGRK-GVAINFV 256 (286)
Q Consensus 195 ~~~f~~~~~~vlv~T~~~~~Gidi~~~~~v--------i~~~~~~s~~~~~Q~~GR~~R~~~~-g~~~~~~ 256 (286)
-++|-+|+..|-|-+.+++.||.+..-..| |.+.+|||...-+|..||+.|.++- +.-|+|+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFl 920 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFL 920 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEE
Confidence 356788999999999999999999876655 3478999999999999999997642 3334333
No 203
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=93.05 E-value=0.15 Score=48.61 Aligned_cols=41 Identities=10% Similarity=0.154 Sum_probs=30.6
Q ss_pred hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhc
Q 023157 29 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 69 (286)
Q Consensus 29 ~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 69 (286)
...+||+|++..-+++.+......+...+.+||||||++.+
T Consensus 414 a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 414 AEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred HhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHH
Confidence 45799999999888777644332334458999999999764
No 204
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=92.98 E-value=2.1 Score=39.19 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=78.7
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCc------cCCCCCCCcEEE
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA------RGIDVQQVSLVI 225 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~------~Gidi~~~~~vi 225 (286)
.+.++|.+|++.-++.-.+.|+..|+.+..+|++++..++..++.....|..+++++|+.-- .-+....++.+|
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iV 132 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVA 132 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEE
Confidence 45789999999998888888988999999999999999999999999999999999986311 112334566666
Q ss_pred EccCC------CCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhc
Q 023157 226 NYDLP------TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 272 (286)
Q Consensus 226 ~~~~~------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 272 (286)
+=.+. .+...-+.+++.....-....++.+.-.........+.+.++
T Consensus 133 iDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~ 185 (591)
T TIGR01389 133 VDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLR 185 (591)
T ss_pred EeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcC
Confidence 42222 112222234443322211223455554455555556666554
No 205
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=92.87 E-value=0.11 Score=42.83 Aligned_cols=39 Identities=26% Similarity=0.210 Sum_probs=28.1
Q ss_pred CCCcEEEeCcHHHHHHHhcC--CCCCCCccEEEEehhhHhhc
Q 023157 30 AGVHVVVGTPGRVFDMLRRQ--SLRPDYIKMFVLDEADEMLS 69 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~~--~~~~~~~~~iIiDE~h~~~~ 69 (286)
..+||+|++..-|++-..+. ...+. -.+|||||||++.+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l~-~~~lIiDEAHnL~d 250 (289)
T smart00489 210 EFANVVVLPYQYLLDPKIRQALSIELK-DSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhccccc-ccEEEEeCccChHH
Confidence 47999999999887655322 22332 47999999998653
No 206
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=92.87 E-value=0.11 Score=42.83 Aligned_cols=39 Identities=26% Similarity=0.210 Sum_probs=28.1
Q ss_pred CCCcEEEeCcHHHHHHHhcC--CCCCCCccEEEEehhhHhhc
Q 023157 30 AGVHVVVGTPGRVFDMLRRQ--SLRPDYIKMFVLDEADEMLS 69 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~~--~~~~~~~~~iIiDE~h~~~~ 69 (286)
..+||+|++..-|++-..+. ...+. -.+|||||||++.+
T Consensus 210 ~~Adivi~ny~yll~~~~r~~~~~~l~-~~~lIiDEAHnL~d 250 (289)
T smart00488 210 EFANVVVLPYQYLLDPKIRQALSIELK-DSIVIFDEAHNLDN 250 (289)
T ss_pred hcCCEEEECHHHHhcHHHHHHhccccc-ccEEEEeCccChHH
Confidence 47999999999887655322 22332 47999999998653
No 207
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.40 E-value=0.75 Score=38.81 Aligned_cols=84 Identities=17% Similarity=0.259 Sum_probs=64.3
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC---
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL--- 211 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~--- 211 (286)
.+..+..++.....-.++|.+|++.-|..+++.+... |..+..+-||+....+...+ ..+.+|||||+.
T Consensus 116 aLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L----~kkPhilVaTPGrL~ 191 (476)
T KOG0330|consen 116 ALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQL----SKKPHILVATPGRLW 191 (476)
T ss_pred HHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHh----hcCCCEEEeCcHHHH
Confidence 5677888888777778999999999999999887654 67899999999866544333 347889999962
Q ss_pred ---C-ccCCCCCCCcEEEE
Q 023157 212 ---L-ARGIDVQQVSLVIN 226 (286)
Q Consensus 212 ---~-~~Gidi~~~~~vi~ 226 (286)
. ..|+++..+.+.|.
T Consensus 192 dhl~~Tkgf~le~lk~LVl 210 (476)
T KOG0330|consen 192 DHLENTKGFSLEQLKFLVL 210 (476)
T ss_pred HHHHhccCccHHHhHHHhh
Confidence 1 56788877777663
No 208
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.70 E-value=1.1 Score=41.28 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=52.5
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCcc-CCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLAR-GIDVQ 219 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gidi~ 219 (286)
...++||.+|++.-|..+++.+... +..+..+||+.+...+...+ .+...|+|+|+ .+.. .+++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchh
Confidence 3457999999999999988776542 67888999998766554443 24578999995 2233 36788
Q ss_pred CCcEEEE
Q 023157 220 QVSLVIN 226 (286)
Q Consensus 220 ~~~~vi~ 226 (286)
++.++|+
T Consensus 149 ~l~~lVl 155 (629)
T PRK11634 149 KLSGLVL 155 (629)
T ss_pred hceEEEe
Confidence 8888875
No 209
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=91.69 E-value=1.8 Score=39.73 Aligned_cols=75 Identities=15% Similarity=0.048 Sum_probs=54.8
Q ss_pred HHHHhhccCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCC
Q 023157 144 CDLYETLAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 219 (286)
Q Consensus 144 ~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~ 219 (286)
-.+.....+..++|.++++.-|...++.+.. .|+++..+.|+++.++|.... ..+|+++|.. +.|+|.-
T Consensus 136 p~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~~-e~~FDyL 208 (656)
T PRK12898 136 PAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADITYCTNK-ELVFDYL 208 (656)
T ss_pred HHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCEEEECCC-chhhhhc
Confidence 3333445678999999999988887776654 588999999999876654432 4689999876 6788876
Q ss_pred CCcEEE
Q 023157 220 QVSLVI 225 (286)
Q Consensus 220 ~~~~vi 225 (286)
.-+.+.
T Consensus 209 rd~~~~ 214 (656)
T PRK12898 209 RDRLAL 214 (656)
T ss_pred cccccc
Confidence 545443
No 210
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=91.67 E-value=0.5 Score=46.58 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=50.2
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC----CCe---eEEecCCCCHHHHHHHHHHhhcCCCcEEEEec
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR----DHT---VSATHGDMDQNTRDIIMREFRSGSSRVLITTD 210 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~---~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 210 (286)
.+.+++|.+|++.-|..+++.++.. +.. +..+||+++..++...++.+.+|..+|+|+|+
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp 186 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTT 186 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 3578999999999999998877653 333 33589999999999999999999999999996
No 211
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=91.57 E-value=0.27 Score=47.37 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=30.6
Q ss_pred hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhc
Q 023157 29 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 69 (286)
Q Consensus 29 ~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 69 (286)
...++|+|+.-.-|+..+....-.+...+++||||||++.+
T Consensus 429 a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 429 AKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred HhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHHH
Confidence 34799999999888877643322345569999999998764
No 212
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=91.40 E-value=1 Score=39.76 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=53.0
Q ss_pred cceEEEecchhhHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCc-cCCCCCCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLA-RGIDVQQV 221 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gidi~~~ 221 (286)
.+++|.+|++.-|..+++.++.. +..+..++|+.+...+...++ +..+|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 47899999999999988877642 578888999998776654443 5678999995 222 34778888
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
+++|+
T Consensus 149 ~~lVi 153 (460)
T PRK11776 149 NTLVL 153 (460)
T ss_pred CEEEE
Confidence 88885
No 213
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=91.38 E-value=1 Score=35.90 Aligned_cols=94 Identities=12% Similarity=0.205 Sum_probs=64.2
Q ss_pred HHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCC----CcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhccc
Q 023157 168 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS----SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 243 (286)
Q Consensus 168 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~----~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~ 243 (286)
+.+.+.. ++.+.+++++.+.+. -.|..+. ..|+|+-+.+++|+.++++....+...+....+++||.=-.
T Consensus 103 l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwF 176 (239)
T PF10593_consen 103 LPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWF 176 (239)
T ss_pred HHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcc
Confidence 3333444 577777776654432 3344333 78899999999999999999999999999999999997444
Q ss_pred c-cCCCcceEEEEeccCcHHHHHHH
Q 023157 244 G-RFGRKGVAINFVTRDDERMLFDI 267 (286)
Q Consensus 244 ~-R~~~~g~~~~~~~~~~~~~~~~~ 267 (286)
| |.|=...|=++.++.-...+..+
T Consensus 177 GYR~gY~dl~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 177 GYRPGYEDLCRIYMPEELYDWFRHI 201 (239)
T ss_pred cCCcccccceEEecCHHHHHHHHHH
Confidence 4 33324566677766544444444
No 214
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=91.37 E-value=2.6 Score=36.95 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=82.8
Q ss_pred HHHhhccCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec------CCcc
Q 023157 145 DLYETLAITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD------LLAR 214 (286)
Q Consensus 145 ~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~ 214 (286)
..+...++ ++|+-.||+--+..-++.+.+. ...++.+.|..++++|...+. +.+|+|||+ ..+-
T Consensus 52 ~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~G 125 (542)
T COG1111 52 NRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAG 125 (542)
T ss_pred HHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcC
Confidence 34444454 8999999976666555555442 346789999999999988776 567999995 3333
Q ss_pred CCCCCCCcEEEEccCCCCc--chhhhhhcccccCCCcceEE--EEeccCcHHHHHHHHHHhchh
Q 023157 215 GIDVQQVSLVINYDLPTQP--ENYLHRIGRSGRFGRKGVAI--NFVTRDDERMLFDIQKFYNVV 274 (286)
Q Consensus 215 Gidi~~~~~vi~~~~~~s~--~~~~Q~~GR~~R~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~ 274 (286)
-+|+.++.++|+=.++... -.|.+.+-...|...+-.++ +-....+.+....+++.++..
T Consensus 126 rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe 189 (542)
T COG1111 126 RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIE 189 (542)
T ss_pred ccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcc
Confidence 4899999999976655433 34566666666654443333 333445777777777776653
No 215
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=91.22 E-value=0.22 Score=46.30 Aligned_cols=40 Identities=23% Similarity=0.220 Sum_probs=28.8
Q ss_pred CCCcEEEeCcHHHHHHHhc-CCCCCC--CccEEEEehhhHhhc
Q 023157 30 AGVHVVVGTPGRVFDMLRR-QSLRPD--YIKMFVLDEADEMLS 69 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~-~~~~~~--~~~~iIiDE~h~~~~ 69 (286)
..+||+|+...-|+..+.. ....+. ..+++||||||++.+
T Consensus 218 ~~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 218 DEADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred hhCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 4689999999888776642 222232 357899999998764
No 216
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=90.64 E-value=0.41 Score=45.46 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=30.4
Q ss_pred CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhc
Q 023157 30 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS 69 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 69 (286)
..+||+|++-..|+..+..... +...+.+||||||++.+
T Consensus 412 ~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l~~ 450 (820)
T PRK07246 412 KTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKLML 450 (820)
T ss_pred HhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchhHH
Confidence 4799999999888876654433 45579999999998763
No 217
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.36 E-value=2.7 Score=36.98 Aligned_cols=83 Identities=19% Similarity=0.274 Sum_probs=59.3
Q ss_pred HHHHHHHHhhc---cCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-
Q 023157 140 LETLCDLYETL---AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL- 211 (286)
Q Consensus 140 ~~~l~~~~~~~---~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~- 211 (286)
+..+.+++-.. .-.++||.||++.-|..++...++. .+.+++.-||++-..+..++.. ..+|+|||+.
T Consensus 237 lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~PDIVIATPGR 312 (691)
T KOG0338|consen 237 LPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----RPDIVIATPGR 312 (691)
T ss_pred HHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----CCCEEEecchh
Confidence 44455555322 3458999999999888777655442 6889999999998888777764 6789999962
Q ss_pred ------CccCCCCCCCcEEEE
Q 023157 212 ------LARGIDVQQVSLVIN 226 (286)
Q Consensus 212 ------~~~Gidi~~~~~vi~ 226 (286)
=+.++|+.++...|.
T Consensus 313 lIDHlrNs~sf~ldsiEVLvl 333 (691)
T KOG0338|consen 313 LIDHLRNSPSFNLDSIEVLVL 333 (691)
T ss_pred HHHHhccCCCccccceeEEEe
Confidence 245677767666664
No 218
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=89.64 E-value=0.82 Score=42.30 Aligned_cols=62 Identities=19% Similarity=0.139 Sum_probs=41.0
Q ss_pred CcEEEeCcHHHHHHHhc---------------CCCCCCCccEEEEehhhHhhcc---------ccHHHHHHHHHhCCcCc
Q 023157 32 VHVVVGTPGRVFDMLRR---------------QSLRPDYIKMFVLDEADEMLSR---------GFKDQIYDIFQLLPAKV 87 (286)
Q Consensus 32 ~~iii~Tp~~l~~~~~~---------------~~~~~~~~~~iIiDE~h~~~~~---------~~~~~~~~i~~~~~~~~ 87 (286)
-.|+++|...|.---.. -.-++. ++||+||||...+. ..+..+..+-+.+| ++
T Consensus 369 rGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~fe--GvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP-~A 445 (1300)
T KOG1513|consen 369 RGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFE--GVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLP-NA 445 (1300)
T ss_pred ceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccc--eeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCC-Cc
Confidence 45999999777533221 001122 69999999986542 13466667777775 88
Q ss_pred cEEEEEeec
Q 023157 88 QVGVFSATM 96 (286)
Q Consensus 88 ~~i~~SAT~ 96 (286)
+++..|||=
T Consensus 446 RVVYASATG 454 (1300)
T KOG1513|consen 446 RVVYASATG 454 (1300)
T ss_pred eEEEeeccC
Confidence 999999994
No 219
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=89.50 E-value=1.5 Score=38.39 Aligned_cols=70 Identities=16% Similarity=0.262 Sum_probs=52.3
Q ss_pred cceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec------CCccCCCCCCCc
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD------LLARGIDVQQVS 222 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gidi~~~~ 222 (286)
.+++|.++++.-|..+++.+.. .+..+..++|+.+...+...+ .+..+|+|+|+ .....++..+++
T Consensus 74 ~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~ 149 (434)
T PRK11192 74 PRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEENFDCRAVE 149 (434)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCcCcccCC
Confidence 5799999999988888765543 467899999998877665444 34678999996 123456778888
Q ss_pred EEEE
Q 023157 223 LVIN 226 (286)
Q Consensus 223 ~vi~ 226 (286)
++|+
T Consensus 150 ~lVi 153 (434)
T PRK11192 150 TLIL 153 (434)
T ss_pred EEEE
Confidence 8875
No 220
>PRK05642 DNA replication initiation factor; Validated
Probab=89.29 E-value=0.7 Score=36.76 Aligned_cols=89 Identities=15% Similarity=0.172 Sum_probs=51.4
Q ss_pred eEEEEEcCcchHH--HHHH-----HhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhcc-ccHHHHHHHHHh
Q 023157 11 KVHACVGGTSVRE--DQRI-----LQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQL 82 (286)
Q Consensus 11 ~~~~~~g~~~~~~--~~~~-----~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~i~~~ 82 (286)
....++|.....+ .... ...+..+++.+.+.+......-.-.+.+.+++|+|++|.+... .+...+..+++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~ 125 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNR 125 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHH
Confidence 5567777655333 2221 2235678888877766432111112445689999999976543 334556677766
Q ss_pred CCcCccEEEEEeecChh
Q 023157 83 LPAKVQVGVFSATMPPE 99 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~ 99 (286)
+..+.+.+++|++.++.
T Consensus 126 ~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 126 LRDSGRRLLLAASKSPR 142 (234)
T ss_pred HHhcCCEEEEeCCCCHH
Confidence 54444567777775543
No 221
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=89.26 E-value=1.9 Score=30.39 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=22.3
Q ss_pred cEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeec
Q 023157 57 KMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 96 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 96 (286)
.+||+||+|.+.. ...+..+........-.+.+++++
T Consensus 89 ~~lviDe~~~l~~---~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLFS---DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHHT---HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcCC---HHHHHHHHHHHhCCCCeEEEEECh
Confidence 5899999999741 344444444443333355666665
No 222
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.06 E-value=8.6 Score=36.33 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=48.6
Q ss_pred cceEEEecchhhHHHHHHHHhcCC-------CeeEEecCCCCHHHHHHHHHHhhc--------CCCcEEEEecCCccCCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSRD-------HTVSATHGDMDQNTRDIIMREFRS--------GSSRVLITTDLLARGID 217 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~~r~~~~~~f~~--------~~~~vlv~T~~~~~Gid 217 (286)
..+++|+++....+++....+..+ ..- ++.+.-+..+-.+++..|.+ |-.-..||-.-.++|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 359999999888877755443321 111 23333344455555555532 22345566678999999
Q ss_pred CCC--CcEEEEccCC
Q 023157 218 VQQ--VSLVINYDLP 230 (286)
Q Consensus 218 i~~--~~~vi~~~~~ 230 (286)
+.+ .+.||..|.|
T Consensus 641 FsD~~~RaVI~tGlP 655 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLP 655 (945)
T ss_pred ccccCCceeEEecCC
Confidence 985 6788999976
No 223
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=88.95 E-value=1.1 Score=39.80 Aligned_cols=69 Identities=9% Similarity=0.241 Sum_probs=55.1
Q ss_pred ceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----CccC----CCCCC
Q 023157 154 QSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----LARG----IDVQQ 220 (286)
Q Consensus 154 ~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~G----idi~~ 220 (286)
-.+|+++|+.-|..+.+.|.. .++.+..+.||++...+.+++.. ...|.|||+. +.++ =++.+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 389999999999999988854 48899999999999888888876 6789999962 2222 25677
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
++|.|+
T Consensus 341 vkcLVl 346 (731)
T KOG0347|consen 341 VKCLVL 346 (731)
T ss_pred ceEEEE
Confidence 888875
No 224
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=88.89 E-value=1 Score=41.12 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=52.5
Q ss_pred CceEEEEEcCcchHHHHHH-------Hh--CCCcEEEeCcHHHHH---HHhcCCCCCCCccEEEEehhhHhhccccHHHH
Q 023157 9 GVKVHACVGGTSVREDQRI-------LQ--AGVHVVVGTPGRVFD---MLRRQSLRPDYIKMFVLDEADEMLSRGFKDQI 76 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~-------~~--~~~~iii~Tp~~l~~---~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~ 76 (286)
..++.-+-|+.+.....+. +. .+.+|+|+|.+.+.- ++.+ -.+.+.|+|||+.+...+ ....
T Consensus 642 ~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-----vKWQYMILDEAQAIKSSs-S~RW 715 (1185)
T KOG0388|consen 642 SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-----VKWQYMILDEAQAIKSSS-SSRW 715 (1185)
T ss_pred cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh-----hhhhheehhHHHHhhhhh-hhHH
Confidence 4577777777664433222 22 278999999877642 2222 124689999999876543 4555
Q ss_pred HHHHHhCCcCccEEEEEeecChhH
Q 023157 77 YDIFQLLPAKVQVGVFSATMPPEA 100 (286)
Q Consensus 77 ~~i~~~~~~~~~~i~~SAT~~~~~ 100 (286)
..+++.- ....+++|+||..+.
T Consensus 716 KtLLsF~--cRNRLLLTGTPIQNs 737 (1185)
T KOG0388|consen 716 KTLLSFK--CRNRLLLTGTPIQNS 737 (1185)
T ss_pred HHHhhhh--ccceeeecCCccchH
Confidence 5555442 234799999987543
No 225
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=88.81 E-value=0.9 Score=28.79 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=42.5
Q ss_pred cccccCceEEEEEcCcchHHHHHHHhC----CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhh
Q 023157 4 LGDYLGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 65 (286)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h 65 (286)
+.+..|+++..++|+.+..+....+.. ..+|+|+|. .....+++..++.||+=+.+
T Consensus 2 ~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~------~~~~Gid~~~~~~vi~~~~~ 61 (78)
T PF00271_consen 2 FLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATD------ILGEGIDLPDASHVIFYDPP 61 (78)
T ss_dssp HHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESC------GGTTSSTSTTESEEEESSSE
T ss_pred ChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeec------cccccccccccccccccccC
Confidence 345679999999999998877766543 689999993 34456778888888886664
No 226
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=88.76 E-value=1.5 Score=37.23 Aligned_cols=48 Identities=15% Similarity=0.283 Sum_probs=27.8
Q ss_pred EEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccc-------cHHHHHHHHHh
Q 023157 35 VVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-------FKDQIYDIFQL 82 (286)
Q Consensus 35 ii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-------~~~~~~~i~~~ 82 (286)
.+..+..+...+.........+++|||||||.+.... ....+..+++.
T Consensus 63 ~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 63 DFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 3444444433333122344568999999999987631 23566666655
No 227
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.75 E-value=0.97 Score=43.91 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=68.6
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP 230 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~ 230 (286)
...++|+|+.-......+...+.-.++....-.+ .++....+..|++ --..++-+...+.|+|+-++.+|+..+|-
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 4468999987766555555555544444333222 2333445555554 22455777889999999999999999999
Q ss_pred CCcchhhhhhcccccCCCcce
Q 023157 231 TQPENYLHRIGRSGRFGRKGV 251 (286)
Q Consensus 231 ~s~~~~~Q~~GR~~R~~~~g~ 251 (286)
.++..-.|.+||+.|.|+...
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred cCchHHHhhhhhhhhcccccc
Confidence 999999999999999988643
No 228
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.49 E-value=0.41 Score=44.52 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=30.8
Q ss_pred HHhCCCcEEEeCcHHHHHHHhcC--CCCCCCccEEEEehhhHhh
Q 023157 27 ILQAGVHVVVGTPGRVFDMLRRQ--SLRPDYIKMFVLDEADEML 68 (286)
Q Consensus 27 ~~~~~~~iii~Tp~~l~~~~~~~--~~~~~~~~~iIiDE~h~~~ 68 (286)
.+..+++||+|-..-|.+-..+. .+++.+ ..||+||||.+.
T Consensus 218 ~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAHNiE 260 (945)
T KOG1132|consen 218 ELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAHNIE 260 (945)
T ss_pred hhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccccHH
Confidence 34457999999988887755543 366666 799999999864
No 229
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=88.23 E-value=7.4 Score=35.89 Aligned_cols=59 Identities=8% Similarity=0.093 Sum_probs=53.3
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 210 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 210 (286)
.+.++|.+|++.-+....+.++..|..+..+++..+.+++..++.....|+.+++++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 35799999999999988889998999999999999999999999999999999999885
No 230
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=87.77 E-value=2.5 Score=37.38 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=51.5
Q ss_pred cceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec------CCccCCCCCCCc
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD------LLARGIDVQQVS 222 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gidi~~~~ 222 (286)
.+++|.++++.-|..+++.++.. +..+..++|+.+.+.+...+ .+..+|+|+|+ .....+++..++
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IiV~TP~rL~~~~~~~~~~l~~v~ 151 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL----RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHH----cCCCcEEEEChHHHHHHHHcCCcccccce
Confidence 36999999999998888877643 56778888988866543332 35789999995 123456788888
Q ss_pred EEEE
Q 023157 223 LVIN 226 (286)
Q Consensus 223 ~vi~ 226 (286)
++|+
T Consensus 152 ~lVi 155 (456)
T PRK10590 152 ILVL 155 (456)
T ss_pred EEEe
Confidence 8875
No 231
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.69 E-value=2.8 Score=36.60 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=51.5
Q ss_pred CcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CC-ccCCCCCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LL-ARGIDVQQV 221 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~-~~Gidi~~~ 221 (286)
+.+++|.+|++.-|..+++.+.. .+..+..++|+.+...+...+ .+..+|+|+|+ .+ ...+++..+
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~~~l~~v 158 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL----ESGVDILIGTTGRLIDYAKQNHINLGAI 158 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcccccc
Confidence 35799999999999988766543 377888899988766554433 24578999996 22 234678888
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
.++|+
T Consensus 159 ~~lVi 163 (423)
T PRK04837 159 QVVVL 163 (423)
T ss_pred cEEEE
Confidence 88875
No 232
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=87.54 E-value=1.7 Score=39.61 Aligned_cols=70 Identities=11% Similarity=0.203 Sum_probs=51.6
Q ss_pred cceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCcc--CCCCCCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLAR--GIDVQQV 221 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gidi~~~ 221 (286)
.++||.++++.-|..+++.+.. .++.+..++|+.+...+...+. +..+|+|+|+ .+.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~----~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ----QGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh----CCCCEEEECHHHHHHHHHhccccchhhe
Confidence 5899999999999988887654 3677899999988776655443 4678999995 2222 3566677
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
+++|+
T Consensus 161 ~~lVi 165 (572)
T PRK04537 161 EICVL 165 (572)
T ss_pred eeeEe
Confidence 77764
No 233
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.31 E-value=1.3 Score=35.18 Aligned_cols=90 Identities=9% Similarity=0.055 Sum_probs=44.2
Q ss_pred CceEEEEEcCcchHHH--HH-----HHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhcc-ccHHHHHHHH
Q 023157 9 GVKVHACVGGTSVRED--QR-----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIF 80 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~--~~-----~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~i~ 80 (286)
+.....++|.....+. .. ....+..+.+.+.+........-.-.+.+.+++++||+|.+... .+...+..++
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~ 123 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLY 123 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHH
Confidence 3456778875553332 11 11234567776665433221110011233579999999987543 2344454555
Q ss_pred HhCCc-CccEEEEEeecCh
Q 023157 81 QLLPA-KVQVGVFSATMPP 98 (286)
Q Consensus 81 ~~~~~-~~~~i~~SAT~~~ 98 (286)
+.... ....+.+|++.++
T Consensus 124 n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 124 NRILESGRTRLLITGDRPP 142 (235)
T ss_pred HHHHHcCCCeEEEeCCCCh
Confidence 44322 2223455555444
No 234
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=86.65 E-value=4.5 Score=37.77 Aligned_cols=80 Identities=13% Similarity=0.015 Sum_probs=57.1
Q ss_pred HHHHHHHhhccCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----
Q 023157 141 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL----- 211 (286)
Q Consensus 141 ~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~----- 211 (286)
..+-.++....+..+.|.+++..-|...++.+.. .|+++..+.++++.+++...+. .+|+++|..
T Consensus 86 a~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~rlgfD 159 (745)
T TIGR00963 86 ATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDITYGTNNELGFD 159 (745)
T ss_pred HHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCCchhhH
Confidence 3333434555677899999998888888776654 4889999999999887765553 689999976
Q ss_pred -C-------ccCCCCCCCcEEEE
Q 023157 212 -L-------ARGIDVQQVSLVIN 226 (286)
Q Consensus 212 -~-------~~Gidi~~~~~vi~ 226 (286)
+ ...+....+.++|+
T Consensus 160 yLrd~~~~~~~~~~~r~l~~aII 182 (745)
T TIGR00963 160 YLRDNMAHSKEEKVQRPFHFAII 182 (745)
T ss_pred HHhcccccchhhhhccccceeEe
Confidence 1 11345667777664
No 235
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=86.20 E-value=1.6 Score=33.35 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=42.1
Q ss_pred cCceEEEEEcCcchHHHHHHHhC-----CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 8 LGVKVHACVGGTSVREDQRILQA-----GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~-----~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
.|.++..+.+..........+.. ...+.|-.+..+...+........ ++.|.|||+|- ++...-..+..+...
T Consensus 31 ~g~~v~vfkp~iD~R~~~~~V~Sr~G~~~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF-~~~~~v~~l~~lad~ 108 (201)
T COG1435 31 AGMKVLVFKPAIDTRYGVGKVSSRIGLSSEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQF-FDEELVYVLNELADR 108 (201)
T ss_pred cCCeEEEEecccccccccceeeeccCCcccceecCChHHHHHHHHhcccCCC-cCEEEEehhHh-CCHHHHHHHHHHHhh
Confidence 46666666666555443333322 244556666667666664322222 68999999994 444445555555554
Q ss_pred C
Q 023157 83 L 83 (286)
Q Consensus 83 ~ 83 (286)
+
T Consensus 109 l 109 (201)
T COG1435 109 L 109 (201)
T ss_pred c
Confidence 3
No 236
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=86.09 E-value=7.3 Score=28.68 Aligned_cols=72 Identities=22% Similarity=0.365 Sum_probs=51.0
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHH-HHHHHHHHhhcCCCcEEEEec-----CCc-cCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQN-TRDIIMREFRSGSSRVLITTD-----LLA-RGIDVQ 219 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~-~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gidi~ 219 (286)
...++++.+|++..++..++.+... +..+..++++.+.. +....+ .++.+|+|+|. ... ...++.
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~~~~~~~ 118 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISNGKINIS 118 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHTTSSTGT
T ss_pred CCceEEEEeecccccccccccccccccccccccccccccccccccccccc----cccccccccCcchhhccccccccccc
Confidence 4459999999999999888877654 45788889988744 333333 66789999994 122 234677
Q ss_pred CCcEEEE
Q 023157 220 QVSLVIN 226 (286)
Q Consensus 220 ~~~~vi~ 226 (286)
.++++|+
T Consensus 119 ~~~~iVi 125 (169)
T PF00270_consen 119 RLSLIVI 125 (169)
T ss_dssp TESEEEE
T ss_pred cceeecc
Confidence 7777765
No 237
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=85.93 E-value=2.7 Score=33.03 Aligned_cols=89 Identities=13% Similarity=0.223 Sum_probs=50.4
Q ss_pred eEEEEEcCcchHHHH---------HHHhCCCcEEEeCcHHHHHHHh----cCCC-----CCCCccEEEEehhhHhhccc-
Q 023157 11 KVHACVGGTSVREDQ---------RILQAGVHVVVGTPGRVFDMLR----RQSL-----RPDYIKMFVLDEADEMLSRG- 71 (286)
Q Consensus 11 ~~~~~~g~~~~~~~~---------~~~~~~~~iii~Tp~~l~~~~~----~~~~-----~~~~~~~iIiDE~h~~~~~~- 71 (286)
....++|+.+..+.- ....++..|+..+.+.+.+.+. .+.. .+...+++++|++|.+.+..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~ 114 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQR 114 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchH
Confidence 456788876533321 1222467899998877765432 1111 24567999999999876542
Q ss_pred cHHHHHHHHHhCCc-CccEEEEEeecChh
Q 023157 72 FKDQIYDIFQLLPA-KVQVGVFSATMPPE 99 (286)
Q Consensus 72 ~~~~~~~i~~~~~~-~~~~i~~SAT~~~~ 99 (286)
+...+..+++.+.. ..++++.|..+|..
T Consensus 115 ~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 115 TQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred HHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 34555555555433 34555555565543
No 238
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.90 E-value=3.7 Score=36.22 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=52.4
Q ss_pred ceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec------CCccCCCCCCCcE
Q 023157 154 QSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD------LLARGIDVQQVSL 223 (286)
Q Consensus 154 ~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gidi~~~~~ 223 (286)
-.+|.++++.-|..++...+. .|+++..+||+.+.-++..-++ -...++|||+ +--.++|+..+.+
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeeeE
Confidence 456677999988877655443 4789999999999888877776 3567999996 2234688888888
Q ss_pred EEE
Q 023157 224 VIN 226 (286)
Q Consensus 224 vi~ 226 (286)
.|+
T Consensus 374 LV~ 376 (731)
T KOG0339|consen 374 LVL 376 (731)
T ss_pred EEE
Confidence 875
No 239
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=85.88 E-value=4.4 Score=35.70 Aligned_cols=88 Identities=10% Similarity=0.159 Sum_probs=47.7
Q ss_pred ceEEEEEcCcchHHHH-------HHHhCCCcEEEeCcHHHHHHHhc----CC-----CCCCCccEEEEehhhHhhccc-c
Q 023157 10 VKVHACVGGTSVREDQ-------RILQAGVHVVVGTPGRVFDMLRR----QS-----LRPDYIKMFVLDEADEMLSRG-F 72 (286)
Q Consensus 10 ~~~~~~~g~~~~~~~~-------~~~~~~~~iii~Tp~~l~~~~~~----~~-----~~~~~~~~iIiDE~h~~~~~~-~ 72 (286)
.+...++|+.+..+-- .....+..+++.+.+.+.+.+.. +. ....+.+++++||+|.+.... .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~ 220 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGAT 220 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhh
Confidence 3567788866643321 11223678888888776544321 11 024567899999999876432 2
Q ss_pred HHHHHHHHHhCCcCccEEEEEeecC
Q 023157 73 KDQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 73 ~~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
...+..+++.+....+.+.+|++.+
T Consensus 221 qeelf~l~N~l~~~~k~IIlts~~~ 245 (445)
T PRK12422 221 QEEFFHTFNSLHTEGKLIVISSTCA 245 (445)
T ss_pred HHHHHHHHHHHHHCCCcEEEecCCC
Confidence 3344444443322223455555443
No 240
>PF13173 AAA_14: AAA domain
Probab=85.76 E-value=1.4 Score=31.17 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=24.1
Q ss_pred ccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeec
Q 023157 56 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 96 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 96 (286)
-.+|++||+|.+.++ ...+..+.... .+.+++ +|++.
T Consensus 62 ~~~i~iDEiq~~~~~--~~~lk~l~d~~-~~~~ii-~tgS~ 98 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDW--EDALKFLVDNG-PNIKII-LTGSS 98 (128)
T ss_pred CcEEEEehhhhhccH--HHHHHHHHHhc-cCceEE-EEccc
Confidence 468999999987644 46777776654 344444 44443
No 241
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=85.23 E-value=0.51 Score=37.08 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=21.7
Q ss_pred hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhh
Q 023157 29 QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEML 68 (286)
Q Consensus 29 ~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~ 68 (286)
...++|+++|+....+..... ....+++||||||-.+.
T Consensus 168 l~~~~vi~~T~~~~~~~~~~~--~~~~~d~vIvDEAsq~~ 205 (236)
T PF13086_consen 168 LKEADVIFTTLSSAASPFLSN--FKEKFDVVIVDEASQIT 205 (236)
T ss_dssp HHT-SEEEEETCGGG-CCGTT-------SEEEETTGGGS-
T ss_pred cccccccccccccchhhHhhh--hcccCCEEEEeCCCCcc
Confidence 347899999988773322211 11267999999998653
No 242
>PRK08727 hypothetical protein; Validated
Probab=85.22 E-value=2.3 Score=33.82 Aligned_cols=89 Identities=13% Similarity=0.059 Sum_probs=44.1
Q ss_pred eEEEEEcCcchHHHH-------HHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccc-cHHHHHHHHHh
Q 023157 11 KVHACVGGTSVREDQ-------RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQL 82 (286)
Q Consensus 11 ~~~~~~g~~~~~~~~-------~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~i~~~ 82 (286)
....++|.....+.- .....+..+++.+.+.+...+..-.-.+.+.++||+||+|.+..+. ....+..+.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~ 121 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNR 121 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHH
Confidence 346777765543321 1222355666666555443332211134556899999999776432 22334445444
Q ss_pred CCcCccEEEEEeecChh
Q 023157 83 LPAKVQVGVFSATMPPE 99 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~ 99 (286)
...+..-+++|+..++.
T Consensus 122 ~~~~~~~vI~ts~~~p~ 138 (233)
T PRK08727 122 ARAAGITLLYTARQMPD 138 (233)
T ss_pred HHHcCCeEEEECCCChh
Confidence 32222234454444433
No 243
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=84.91 E-value=1.6 Score=35.82 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=32.6
Q ss_pred CCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeec
Q 023157 52 RPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 96 (286)
Q Consensus 52 ~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 96 (286)
....++.+|+||||.+.... ...+.+.+...+...+.++++.-+
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCCh
Confidence 44557999999999887664 456667777777777777777664
No 244
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=84.91 E-value=0.49 Score=45.03 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=45.6
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHH-HHHHhcCC------CCCCCccEEEEehhhHhh
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQS------LRPDYIKMFVLDEADEML 68 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l-~~~~~~~~------~~~~~~~~iIiDE~h~~~ 68 (286)
..+.+++|+.|.++..+...++....+ .+||..+|..-+ +++++.+- .....+.+.||||++.++
T Consensus 200 ~p~y~flGLtVg~i~~~~~~~~Rr~aY--~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 200 NPVFEFHGLSVGVILNTMRPEERREQY--LCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred HHHHHHhCCeeeeeCCCCCHHHHHHhC--CCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 456778999999998876666555444 689999998666 44444322 123447899999999754
No 245
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=84.83 E-value=2.7 Score=31.13 Aligned_cols=51 Identities=20% Similarity=0.405 Sum_probs=37.8
Q ss_pred CCCccEEEEehhhHhhcccc--HHHHHHHHHhCCcCccEEEEEeecChhHHHH
Q 023157 53 PDYIKMFVLDEADEMLSRGF--KDQIYDIFQLLPAKVQVGVFSATMPPEALEI 103 (286)
Q Consensus 53 ~~~~~~iIiDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 103 (286)
...+++||+||+-...+.++ ...+..+++..|....+|+.+-.+++.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~ 145 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA 145 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 34579999999998766653 3677788888887777777777777665554
No 246
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=84.76 E-value=0.55 Score=43.91 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=27.4
Q ss_pred CCCcEEEeCcHHHHHHHhcC--CCCCCCccEEEEehhhHhhc
Q 023157 30 AGVHVVVGTPGRVFDMLRRQ--SLRPDYIKMFVLDEADEMLS 69 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~~--~~~~~~~~~iIiDE~h~~~~ 69 (286)
..+||||+...-+++-..+. ...+.+ .+|||||||.+.+
T Consensus 194 ~~advIi~pYnyl~dp~~r~~~~~~l~~-~ivI~DEAHNL~d 234 (705)
T TIGR00604 194 PFANIVLLPYQYLLDPKIRSAVSIELKD-SIVIFDEAHNLDN 234 (705)
T ss_pred hcCCEEEechHHhcCHHHHHHhhccccc-CEEEEECccchHH
Confidence 36999999998876543332 233444 6999999998754
No 247
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=84.71 E-value=0.82 Score=42.44 Aligned_cols=41 Identities=17% Similarity=0.163 Sum_probs=30.2
Q ss_pred CCCcEEEeCcHHHHHHHhcCCCC--CCCccEEEEehhhHhhcc
Q 023157 30 AGVHVVVGTPGRVFDMLRRQSLR--PDYIKMFVLDEADEMLSR 70 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~~~~~--~~~~~~iIiDE~h~~~~~ 70 (286)
..++++|+++..+.......... +..-+++|+||+|++.+.
T Consensus 193 ~~ad~vv~nh~~~~~~~~~~~~~~~~p~~~v~v~DEAH~l~d~ 235 (654)
T COG1199 193 ENADLVVTNHALLLADVALEESRILLPENDVVVFDEAHNLPDI 235 (654)
T ss_pred hhCCEEEEccHHHHhHHHhhhhhccCCcccEEEEeccccchHH
Confidence 46899999999888765543332 234479999999987664
No 248
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=84.59 E-value=8.2 Score=35.02 Aligned_cols=88 Identities=15% Similarity=0.180 Sum_probs=50.5
Q ss_pred HHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCC
Q 023157 140 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ 219 (286)
Q Consensus 140 ~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~ 219 (286)
..-+..-++....+.+.|.|++..+|..+.+.|++... ...+ ...-+.|..|. .|-......|+.+
T Consensus 643 ~~~ii~~mkk~~~etiaVi~kt~~d~~~~~d~lre~~~-~r~I---------~k~nq~f~~~~---~vipvy~aKGlEF- 708 (747)
T COG3973 643 NPDIIPRMKKRGSETIAVICKTDHDCKAVMDSLREKDS-QRTI---------AKENQRFHHGS---DVIPVYDAKGLEF- 708 (747)
T ss_pred hHHHHHHHHhcCCCceEEECCcHHHHHHHHHHHhhcch-hhHH---------HhhcccccCCc---eEEEeeeccccee-
Confidence 33344444555557888999999999999999975431 1111 11111222222 3333455688866
Q ss_pred CCcEEEEccCC------CCcchhhhhhccc
Q 023157 220 QVSLVINYDLP------TQPENYLHRIGRS 243 (286)
Q Consensus 220 ~~~~vi~~~~~------~s~~~~~Q~~GR~ 243 (286)
++||.+++. .....++=++.||
T Consensus 709 --D~viv~d~s~~e~te~~~r~LYva~TRA 736 (747)
T COG3973 709 --DHVIVVDPSIVEETEQDLRDLYVAVTRA 736 (747)
T ss_pred --eeEEEecchhhcccccchhhHHHHHHHH
Confidence 899998883 3344444455555
No 249
>PRK06893 DNA replication initiation factor; Validated
Probab=84.30 E-value=1.9 Score=34.08 Aligned_cols=90 Identities=14% Similarity=0.166 Sum_probs=46.1
Q ss_pred eEEEEEcCcchHHH--HH-----HHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhcc-ccHHHHHHHHHh
Q 023157 11 KVHACVGGTSVRED--QR-----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQL 82 (286)
Q Consensus 11 ~~~~~~g~~~~~~~--~~-----~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~i~~~ 82 (286)
+...++|.....+. .. ....+..+.+.+.+........-.-.+.+.+++++||+|.+... .+...+..+++.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~ 119 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNR 119 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHH
Confidence 45577775553332 11 12234556666654322111110012345689999999987532 233445555554
Q ss_pred CCc-CccEEEEEeecChhH
Q 023157 83 LPA-KVQVGVFSATMPPEA 100 (286)
Q Consensus 83 ~~~-~~~~i~~SAT~~~~~ 100 (286)
... ..+++.+|++.++..
T Consensus 120 ~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 120 IKEQGKTLLLISADCSPHA 138 (229)
T ss_pred HHHcCCcEEEEeCCCChHH
Confidence 432 345677788766543
No 250
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=84.28 E-value=3.2 Score=39.55 Aligned_cols=85 Identities=12% Similarity=0.007 Sum_probs=48.8
Q ss_pred CceEEEEEcCcchHHHHH---HHhCCCcEEEeCcHHHHHHHhcCC-------------CCCCCccEEEEehhhHhhccc-
Q 023157 9 GVKVHACVGGTSVREDQR---ILQAGVHVVVGTPGRVFDMLRRQS-------------LRPDYIKMFVLDEADEMLSRG- 71 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~---~~~~~~~iii~Tp~~l~~~~~~~~-------------~~~~~~~~iIiDE~h~~~~~~- 71 (286)
.+.|..+..-...+.+.- .|...-.|.|.-.+++..+..... +.-...++||+||+|.+.+..
T Consensus 759 ~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeks 838 (1567)
T KOG1015|consen 759 KLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKS 838 (1567)
T ss_pred cceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchH
Confidence 345555555444444433 333445788887777655432211 122335899999999876653
Q ss_pred -cHHHHHHHHHhCCcCccEEEEEeecCh
Q 023157 72 -FKDQIYDIFQLLPAKVQVGVFSATMPP 98 (286)
Q Consensus 72 -~~~~~~~i~~~~~~~~~~i~~SAT~~~ 98 (286)
....+..+. ..+.|++|+||-.
T Consensus 839 a~Skam~~ir-----tkRRI~LTGTPLQ 861 (1567)
T KOG1015|consen 839 AVSKAMNSIR-----TKRRIILTGTPLQ 861 (1567)
T ss_pred HHHHHHHHHH-----hheeEEeecCchh
Confidence 223444443 3457999999854
No 251
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=84.18 E-value=3.6 Score=32.29 Aligned_cols=89 Identities=6% Similarity=0.109 Sum_probs=41.9
Q ss_pred ceEEEEEcCcchHHH--HHHH-----hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhcc-ccHHHHHHHHH
Q 023157 10 VKVHACVGGTSVRED--QRIL-----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQ 81 (286)
Q Consensus 10 ~~~~~~~g~~~~~~~--~~~~-----~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~i~~ 81 (286)
-....++|..+..+. ...+ ..+..+++.+-..+......-.-.+...+++||||+|.+... .+...+..++.
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~ 117 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQADLVCLDDVEAIAGQPEWQEALFHLYN 117 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHH
Confidence 455667775554332 1111 123455555543333211110011233479999999987643 22344555544
Q ss_pred hCCcCccEEEEEeecCh
Q 023157 82 LLPAKVQVGVFSATMPP 98 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~~ 98 (286)
........+.+|++.++
T Consensus 118 ~~~~~~~~iIits~~~~ 134 (226)
T TIGR03420 118 RVREAGGRLLIAGRAAP 134 (226)
T ss_pred HHHHcCCeEEEECCCCh
Confidence 43222234556666443
No 252
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.08 E-value=3.7 Score=36.05 Aligned_cols=76 Identities=13% Similarity=0.178 Sum_probs=53.8
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHH-HHHHHHHHhhcCCCcEEEEec-------CCccCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQN-TRDIIMREFRSGSSRVLITTD-------LLARGIDV 218 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~-~r~~~~~~f~~~~~~vlv~T~-------~~~~Gidi 218 (286)
+.-+++|.++++.-+..+++.+... |..++...|.-+-+ +..+.........++|||+|+ -...|+|+
T Consensus 214 ~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~L 293 (620)
T KOG0350|consen 214 KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDL 293 (620)
T ss_pred cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcch
Confidence 3348999999999999999988764 55666666654433 233333344445679999996 23688999
Q ss_pred CCCcEEEE
Q 023157 219 QQVSLVIN 226 (286)
Q Consensus 219 ~~~~~vi~ 226 (286)
..+.+.|+
T Consensus 294 k~LrfLVI 301 (620)
T KOG0350|consen 294 KHLRFLVI 301 (620)
T ss_pred hhceEEEe
Confidence 99998886
No 253
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=84.07 E-value=3 Score=31.39 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=36.4
Q ss_pred CCccEEEEehhhHhhccccH--HHHHHHHHhCCcCccEEEEEeecChhHHHH
Q 023157 54 DYIKMFVLDEADEMLSRGFK--DQIYDIFQLLPAKVQVGVFSATMPPEALEI 103 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 103 (286)
..+++||+||+-...+.++- ..+..+++..|....+|+..-.+|+.+.+.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~ 147 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLEL 147 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 45799999999987777644 667788888887776766666666555443
No 254
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=84.01 E-value=2.5 Score=31.44 Aligned_cols=65 Identities=11% Similarity=0.236 Sum_probs=40.2
Q ss_pred CCcEEEeCcHHH---------HHHHhc---CCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecC
Q 023157 31 GVHVVVGTPGRV---------FDMLRR---QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 31 ~~~iii~Tp~~l---------~~~~~~---~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
.+|+.+..|+.- ..+... ... ....+++||||+|.+.... .+.+.+.+..-+.+..++++|..+.
T Consensus 67 ~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~-~~~~KviiI~~ad~l~~~a-~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 67 HPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPS-EGKYKVIIIDEADKLTEEA-QNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-T-TSSSEEEEEETGGGS-HHH-HHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CcceEEEecccccchhhHHHHHHHHHHHHHHHh-cCCceEEEeehHhhhhHHH-HHHHHHHhcCCCCCEEEEEEECChH
Confidence 578887776522 222222 222 2457899999999765543 5777777777777776776666553
No 255
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=83.68 E-value=5 Score=39.38 Aligned_cols=58 Identities=10% Similarity=0.093 Sum_probs=50.1
Q ss_pred cceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc--CCCcEEEEec
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS--GSSRVLITTD 210 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~ 210 (286)
+.+||.+|.+.-+..-...|...++.+..+.++++..++..++..+.. |+.++|++|+
T Consensus 501 GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTP 560 (1195)
T PLN03137 501 GITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTP 560 (1195)
T ss_pred CcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEECh
Confidence 468999999988875556666778999999999999999999998876 8999999997
No 256
>PRK09401 reverse gyrase; Reviewed
Probab=83.27 E-value=3.4 Score=41.02 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=54.1
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC----CCeeE--EecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVS--ATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARGIDVQ 219 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~--~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~Gidi~ 219 (286)
.+.+++|.+|++.-+..+++.++.. +..+. ..+++++..++.+..+.+..|..+|+|+|+ ... .+...
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~ 200 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKK 200 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hcccc
Confidence 4678999999999999999888764 33333 334556677788888888999999999995 221 33444
Q ss_pred CCcEEEE
Q 023157 220 QVSLVIN 226 (286)
Q Consensus 220 ~~~~vi~ 226 (286)
.++++|+
T Consensus 201 ~~~~lVv 207 (1176)
T PRK09401 201 KFDFVFV 207 (1176)
T ss_pred ccCEEEE
Confidence 4677764
No 257
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=83.25 E-value=2.1 Score=39.64 Aligned_cols=81 Identities=19% Similarity=0.114 Sum_probs=45.9
Q ss_pred cCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCc
Q 023157 8 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV 87 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~ 87 (286)
-...+..++| ..++...+ .+++|+++|++.+.. ..+..-.+-.||+||+|.+.+.... .....-.+ ...
T Consensus 215 ~~l~v~v~~g---r~kd~~el-~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~tq--~~~a~~~L-~a~ 283 (674)
T KOG1001|consen 215 DKLSIYVYHG---RTKDKSEL-NSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDTQ--IFKAVCQL-DAK 283 (674)
T ss_pred cceEEEEecc---cccccchh-cCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcchH--hhhhheee-ccc
Confidence 3456677777 11122222 357899999988764 2222233458999999998777522 11111111 123
Q ss_pred cEEEEEeecChh
Q 023157 88 QVGVFSATMPPE 99 (286)
Q Consensus 88 ~~i~~SAT~~~~ 99 (286)
..=.+|+||..+
T Consensus 284 ~RWcLtgtPiqn 295 (674)
T KOG1001|consen 284 YRWCLTGTPIQN 295 (674)
T ss_pred eeeeecCChhhh
Confidence 355678888644
No 258
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=83.05 E-value=16 Score=32.86 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=46.8
Q ss_pred HHHHHHHHhh----ccCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec
Q 023157 140 LETLCDLYET----LAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 210 (286)
Q Consensus 140 ~~~l~~~~~~----~~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 210 (286)
+..+..+++. ..|-.+||..||+.-|...++.|.. +++++..+.||...+ .+.-+-...+|||||+
T Consensus 125 vPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k-----~E~eRi~~mNILVCTP 198 (758)
T KOG0343|consen 125 VPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK-----FELERISQMNILVCTP 198 (758)
T ss_pred HHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH-----HHHHhhhcCCeEEech
Confidence 3445555542 2455899999999999999999975 356788888886532 2333456789999996
No 259
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=82.95 E-value=11 Score=33.52 Aligned_cols=71 Identities=15% Similarity=0.220 Sum_probs=51.2
Q ss_pred cceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC------CccCCCCCCCc
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL------LARGIDVQQVS 222 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gidi~~~~ 222 (286)
.++||.++++.-|...++.++. .+..+..++|+.+...+. +.+..+..+|+|+|+. -...+.+..++
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 5799999999999888876654 367888889987655433 3445677899999962 12245667778
Q ss_pred EEEE
Q 023157 223 LVIN 226 (286)
Q Consensus 223 ~vi~ 226 (286)
+||+
T Consensus 240 ~lVi 243 (475)
T PRK01297 240 VMVL 243 (475)
T ss_pred eEEe
Confidence 7775
No 260
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=82.79 E-value=3.8 Score=36.16 Aligned_cols=89 Identities=10% Similarity=0.096 Sum_probs=49.3
Q ss_pred eEEEEEcCcchHHH--HHH-------HhCCCcEEEeCcHHHHHHHhcC------CC-----CCCCccEEEEehhhHhhcc
Q 023157 11 KVHACVGGTSVRED--QRI-------LQAGVHVVVGTPGRVFDMLRRQ------SL-----RPDYIKMFVLDEADEMLSR 70 (286)
Q Consensus 11 ~~~~~~g~~~~~~~--~~~-------~~~~~~iii~Tp~~l~~~~~~~------~~-----~~~~~~~iIiDE~h~~~~~ 70 (286)
....++|+.+..+- ... ...+..+++.|++.+.+.+... .+ ...+.+++|+||+|.+...
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k 221 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYK 221 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCC
Confidence 45677886664332 111 1235788888887776554320 11 1355789999999977533
Q ss_pred -ccHHHHHHHHHhCCcCccEEEEEeecChh
Q 023157 71 -GFKDQIYDIFQLLPAKVQVGVFSATMPPE 99 (286)
Q Consensus 71 -~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 99 (286)
.....+..+++.+....+.+.+|+..+|.
T Consensus 222 ~~~~e~lf~l~N~~~~~~k~iIltsd~~P~ 251 (450)
T PRK14087 222 EKTNEIFFTIFNNFIENDKQLFFSSDKSPE 251 (450)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 23345555555543333345555554443
No 261
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=82.46 E-value=1.6 Score=39.94 Aligned_cols=46 Identities=13% Similarity=0.243 Sum_probs=31.0
Q ss_pred CCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecC
Q 023157 49 QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 49 ~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
+...-+.++++|+|||+.+....+...+ -++.. .++++|++|.|-+
T Consensus 346 NsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~--~n~k~I~ISS~Ns 391 (738)
T PHA03368 346 NGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ--TNCKIIFVSSTNT 391 (738)
T ss_pred CCccCCcccEEEEechhhCCHHHHHHHH-HHHhc--cCccEEEEecCCC
Confidence 3345566899999999977555444443 33332 3788999998854
No 262
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=82.15 E-value=1.7 Score=39.66 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=27.9
Q ss_pred CCcEEEeCcHHHHHHHhcCC--CCCCCccEEEEehhhHhhc
Q 023157 31 GVHVVVGTPGRVFDMLRRQS--LRPDYIKMFVLDEADEMLS 69 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~ 69 (286)
.+++++.-.+.|++--.++. +.+.+ ++|||||||.+.+
T Consensus 323 ~aqlV~LPYQ~LL~~stR~slgI~Lkd-sIvIiDEAHNlid 362 (821)
T KOG1133|consen 323 QAQLVTLPYQLLLHESTRKSLGISLKD-SIVIIDEAHNLID 362 (821)
T ss_pred cccEEeccHHHHHhHHHHHhcCccccc-cEEEEechhHHHH
Confidence 58888888888877655533 34444 6999999998765
No 263
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=82.00 E-value=3.3 Score=34.71 Aligned_cols=68 Identities=21% Similarity=0.200 Sum_probs=50.5
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 210 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 210 (286)
.+..+..+-++..+.-.+|++|+++-|..+++.|.-. +..+.++.|+++.-.+...+ ..+.+++|+|+
T Consensus 62 aLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L----~~rPHvVvatP 133 (442)
T KOG0340|consen 62 ALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAIL----SDRPHVVVATP 133 (442)
T ss_pred hHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhc----ccCCCeEecCc
Confidence 3445555556666778999999999999999988654 67899999998654443333 35778999996
No 264
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=81.95 E-value=2.3 Score=35.00 Aligned_cols=40 Identities=15% Similarity=0.449 Sum_probs=22.9
Q ss_pred ccEEEEehhhHhhccccH--HHHHHHHHhCCcC--ccEEEEEeec
Q 023157 56 IKMFVLDEADEMLSRGFK--DQIYDIFQLLPAK--VQVGVFSATM 96 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~~~--~~~~~i~~~~~~~--~~~i~~SAT~ 96 (286)
+.++||||+|++...+.. ......++.+.+. ..++++ +|.
T Consensus 146 vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v-Gt~ 189 (302)
T PF05621_consen 146 VRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV-GTR 189 (302)
T ss_pred CcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe-ccH
Confidence 689999999998755422 2333334444332 445544 553
No 265
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=81.76 E-value=4.5 Score=30.52 Aligned_cols=50 Identities=24% Similarity=0.384 Sum_probs=36.7
Q ss_pred CCccEEEEehhhHhhccccH--HHHHHHHHhCCcCccEEEEEeecChhHHHH
Q 023157 54 DYIKMFVLDEADEMLSRGFK--DQIYDIFQLLPAKVQVGVFSATMPPEALEI 103 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 103 (286)
..+++||+||+-...+.++- ..+..+++..|....+|+..-.+++.+.+.
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~ 165 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAI 165 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh
Confidence 45799999999988777644 677788888877776766666666655443
No 266
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=81.75 E-value=19 Score=34.65 Aligned_cols=133 Identities=14% Similarity=0.132 Sum_probs=82.6
Q ss_pred HHHHHHHHhhccCcceEEEecc----hhhHHHHHHHHhcCC--CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-CC
Q 023157 140 LETLCDLYETLAITQSVIFVNT----RRKVDWLTDKMRSRD--HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LL 212 (286)
Q Consensus 140 ~~~l~~~~~~~~~~~~ivf~~~----~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~ 212 (286)
+..+..+++... .+.|++.|+ .++++++.+...+.+ +.+..++|+.+.++|. .+.++..+||+++. |+
T Consensus 104 lPIld~~l~~~~-a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNpdML 178 (851)
T COG1205 104 LPILDHLLRDPS-ARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNPDML 178 (851)
T ss_pred HHHHHHHhhCcC-ccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCHHHH
Confidence 344444444433 478999999 557778888887776 7899999999999887 44557889999984 44
Q ss_pred ccCCC---------CCCCcEEEEccCC-------CCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcc
Q 023157 213 ARGID---------VQQVSLVINYDLP-------TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 276 (286)
Q Consensus 213 ~~Gid---------i~~~~~vi~~~~~-------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (286)
..-+- ...+.++|+=.+. ..+...+-|+.|..|.......++..+..-.......+++.+..++
T Consensus 179 h~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~ 258 (851)
T COG1205 179 HYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFE 258 (851)
T ss_pred HHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcce
Confidence 33211 1235566542221 2455666677666665444555666666544444455555555555
Q ss_pred c
Q 023157 277 E 277 (286)
Q Consensus 277 ~ 277 (286)
.
T Consensus 259 ~ 259 (851)
T COG1205 259 V 259 (851)
T ss_pred e
Confidence 4
No 267
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=81.48 E-value=2 Score=40.13 Aligned_cols=39 Identities=13% Similarity=0.293 Sum_probs=25.3
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
..+++||||+|.+.... .+.+.+++...+.+.++|+.|.
T Consensus 119 r~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred CceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEEC
Confidence 46899999999876554 3445556666555555555443
No 268
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=81.31 E-value=2.4 Score=40.69 Aligned_cols=83 Identities=19% Similarity=0.119 Sum_probs=49.0
Q ss_pred EEEEEcCcc-----hHHHHHHHhCC----CcEEEeCcHHHHHHH-hcCCCCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 12 VHACVGGTS-----VREDQRILQAG----VHVVVGTPGRVFDML-RRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 12 ~~~~~g~~~-----~~~~~~~~~~~----~~iii~Tp~~l~~~~-~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
+...+|... .+......... .+++++|.+.+.+.. ....+.-..++.+|+||+|.+.+.. ......+.
T Consensus 419 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s~~~~~l~- 496 (866)
T COG0553 419 VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-SSEGKALQ- 496 (866)
T ss_pred eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-hHHHHHHH-
Confidence 667777654 22222232222 799999998887732 1123344456899999999976654 22222222
Q ss_pred hCCcCccEEEEEeecC
Q 023157 82 LLPAKVQVGVFSATMP 97 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~ 97 (286)
.+. ....+.+|+||-
T Consensus 497 ~~~-~~~~~~LtgTPl 511 (866)
T COG0553 497 FLK-ALNRLDLTGTPL 511 (866)
T ss_pred HHh-hcceeeCCCChH
Confidence 222 233599999984
No 269
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=81.17 E-value=3.5 Score=31.94 Aligned_cols=35 Identities=29% Similarity=0.576 Sum_probs=30.8
Q ss_pred CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehh
Q 023157 30 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEA 64 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~ 64 (286)
+...+-|+||.++..+.....+...++.+||+|=.
T Consensus 195 ~~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~s 229 (271)
T KOG3089|consen 195 RVVHLGIGTPGRIKELVKQGGFNLSPLKFIILDWS 229 (271)
T ss_pred cceeEeecCcHHHHHHHHhcCCCCCcceeEEeecc
Confidence 36889999999999999998888999999999843
No 270
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=80.87 E-value=2.3 Score=33.01 Aligned_cols=35 Identities=11% Similarity=0.247 Sum_probs=23.1
Q ss_pred cEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 57 KMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
.+||+|||+.+ ....+..++.....+.+++++.-+
T Consensus 121 ~~iIvDEaQN~----t~~~~k~ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 121 AFIIVDEAQNL----TPEELKMILTRIGEGSKIIITGDP 155 (205)
T ss_dssp EEEEE-SGGG------HHHHHHHHTTB-TT-EEEEEE--
T ss_pred eEEEEecccCC----CHHHHHHHHcccCCCcEEEEecCc
Confidence 79999999976 356778888888888877777654
No 271
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=80.68 E-value=3 Score=27.28 Aligned_cols=37 Identities=5% Similarity=0.074 Sum_probs=30.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
+..++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 3468899998877888889999999888888888864
No 272
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=80.59 E-value=4.9 Score=30.75 Aligned_cols=50 Identities=22% Similarity=0.370 Sum_probs=35.3
Q ss_pred CCccEEEEehhhHhhccccH--HHHHHHHHhCCcCccEEEEEeecChhHHHH
Q 023157 54 DYIKMFVLDEADEMLSRGFK--DQIYDIFQLLPAKVQVGVFSATMPPEALEI 103 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 103 (286)
..+++||+||+-...+.++- ..+..++...|....+|+..-.+++.+.+.
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ 165 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEA 165 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 45799999999988877644 667777887776666665555555555443
No 273
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=80.49 E-value=1.7 Score=42.31 Aligned_cols=88 Identities=17% Similarity=0.029 Sum_probs=54.8
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCC--------------CC-CC-----ccEEEEehhhHhh
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL--------------RP-DY-----IKMFVLDEADEML 68 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~--------------~~-~~-----~~~iIiDE~h~~~ 68 (286)
++++..+.|-.+.......-.-++|||+||.+.|..-+..... .+ +. +=-|++||++++.
T Consensus 446 ~lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMve 525 (1394)
T KOG0298|consen 446 LLKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVE 525 (1394)
T ss_pred cceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhc
Confidence 3577777775443332222223799999999999765543211 11 11 2257999999765
Q ss_pred ccccHHHHHHHHHhCCcCccEEEEEeecChh
Q 023157 69 SRGFKDQIYDIFQLLPAKVQVGVFSATMPPE 99 (286)
Q Consensus 69 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 99 (286)
.. .....++...++ ....=++|+||-..
T Consensus 526 ss--sS~~a~M~~rL~-~in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 526 SS--SSAAAEMVRRLH-AINRWCVTGTPIQK 553 (1394)
T ss_pred ch--HHHHHHHHHHhh-hhceeeecCCchhh
Confidence 43 466667776664 56688999998644
No 274
>PTZ00110 helicase; Provisional
Probab=80.40 E-value=6.6 Score=35.66 Aligned_cols=71 Identities=11% Similarity=0.209 Sum_probs=50.8
Q ss_pred CcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccC-CCCCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARG-IDVQQV 221 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-idi~~~ 221 (286)
+..+||.+|++.-|..+.+.++.. ++.+..++++.+...+...+. ...+|+|+|+ .+..+ .++..+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~----~~~~IlVaTPgrL~d~l~~~~~~l~~v 278 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALR----RGVEILIACPGRLIDFLESNVTNLRRV 278 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHH----cCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 346899999999999888877664 456778888887665544332 2478999995 33333 667788
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
+++|+
T Consensus 279 ~~lVi 283 (545)
T PTZ00110 279 TYLVL 283 (545)
T ss_pred cEEEe
Confidence 88875
No 275
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.23 E-value=2 Score=39.38 Aligned_cols=41 Identities=15% Similarity=0.361 Sum_probs=25.7
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
...+++||||+|.+....+ +.+.+.++.-+.+..+|+.|..
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCC
Confidence 3468999999998765543 4444555554555555555543
No 276
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=80.15 E-value=3 Score=39.70 Aligned_cols=39 Identities=21% Similarity=0.374 Sum_probs=27.2
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
...+++||||+|.+.... .+.+.++++..+....+|++|
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 456899999999876543 456666666666666666655
No 277
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=79.74 E-value=11 Score=35.97 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=47.5
Q ss_pred HHHhhccCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC
Q 023157 145 DLYETLAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 211 (286)
Q Consensus 145 ~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 211 (286)
.+.....+..+.|.++++.-|...++.+.. .|+++..+.|+++..+|...+ ..+|+++|+.
T Consensus 116 a~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 116 AYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred HHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 333444667899999999888888877754 488999999999988876555 4789999963
No 278
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=79.46 E-value=3.3 Score=27.66 Aligned_cols=37 Identities=11% Similarity=0.206 Sum_probs=31.3
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
+..+++++|.+-..+...+..|+..|+.+..+.|++.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 4568999999888889999999999998877888764
No 279
>PRK10536 hypothetical protein; Provisional
Probab=79.35 E-value=4.7 Score=32.51 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=25.8
Q ss_pred cEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe
Q 023157 57 KMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
++||+||++.+. ...+..++...+.+.+++++.-
T Consensus 178 ~~vIvDEaqn~~----~~~~k~~ltR~g~~sk~v~~GD 211 (262)
T PRK10536 178 AVVILDEAQNVT----AAQMKMFLTRLGENVTVIVNGD 211 (262)
T ss_pred CEEEEechhcCC----HHHHHHHHhhcCCCCEEEEeCC
Confidence 799999999763 4677788888887777666543
No 280
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=79.32 E-value=15 Score=35.26 Aligned_cols=68 Identities=9% Similarity=0.011 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhhccCcceEEEecchhhHH----HHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC
Q 023157 138 WKLETLCDLYETLAITQSVIFVNTRRKVD----WLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 211 (286)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~ivf~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 211 (286)
.....+..++....+..+-|.+++..-|. .+...+...|+++..+.+++++.+|..++. .+|+.+|..
T Consensus 109 TLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~ 180 (913)
T PRK13103 109 TLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNN 180 (913)
T ss_pred hHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEccc
Confidence 35566667777788889999999955544 455555566999999999999999988877 788888865
No 281
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=79.30 E-value=5.2 Score=30.09 Aligned_cols=51 Identities=20% Similarity=0.393 Sum_probs=31.9
Q ss_pred CCCccEEEEehhhHhhccccH--HHHHHHHHhCCcCccEEEEEeecChhHHHH
Q 023157 53 PDYIKMFVLDEADEMLSRGFK--DQIYDIFQLLPAKVQVGVFSATMPPEALEI 103 (286)
Q Consensus 53 ~~~~~~iIiDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 103 (286)
-..+++||+||+-...+.++. ..+..+++..|....+|+.--.+++.+.+.
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 345799999999988777644 667788887777776666666666555444
No 282
>PRK06526 transposase; Provisional
Probab=78.12 E-value=2.8 Score=33.78 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=40.5
Q ss_pred hCCCcEEEeCcHHHHHHHhcC----C-----CCCCCccEEEEehhhHhhccc-cHHHHHHHHHhCCcCccEEEEEeecCh
Q 023157 29 QAGVHVVVGTPGRVFDMLRRQ----S-----LRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLPAKVQVGVFSATMPP 98 (286)
Q Consensus 29 ~~~~~iii~Tp~~l~~~~~~~----~-----~~~~~~~~iIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~ 98 (286)
..+..+++.|...+.+.+... . ..+...+++||||+|...... ....+..+++....+..+|+.|..++.
T Consensus 124 ~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~ 203 (254)
T PRK06526 124 QAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFG 203 (254)
T ss_pred HCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHH
Confidence 346778888877776655321 1 123457899999999654222 123344554433223456777776654
Q ss_pred h
Q 023157 99 E 99 (286)
Q Consensus 99 ~ 99 (286)
.
T Consensus 204 ~ 204 (254)
T PRK06526 204 R 204 (254)
T ss_pred H
Confidence 3
No 283
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.86 E-value=2.8 Score=37.55 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=25.6
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
..+++||||+|.+.... .+.+.+.+...|....+|+.|
T Consensus 119 ~~kV~iIDE~~~ls~~a-~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 119 RFKVYLIDEVHMLSGHS-FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CcEEEEEEChHhcCHHH-HHHHHHHHhccCCCeEEEEEE
Confidence 46899999999876544 344555666666566666555
No 284
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=77.62 E-value=3.1 Score=36.82 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=38.2
Q ss_pred cccCceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEE
Q 023157 6 DYLGVKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFV 60 (286)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iI 60 (286)
+..|+++..+||+++-++....+. +..+|+|||. .....++..++++||
T Consensus 538 eK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------vAgRGIDIpnVSlVi 590 (673)
T KOG0333|consen 538 EKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATD------VAGRGIDIPNVSLVI 590 (673)
T ss_pred hhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------ccccCCCCCccceee
Confidence 345799999999999887776554 3789999993 444568888888876
No 285
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=77.21 E-value=17 Score=31.97 Aligned_cols=89 Identities=13% Similarity=0.271 Sum_probs=46.3
Q ss_pred ceEEEEEcCcchHHHH--H-----HHh--CCCcEEEeCcHHHHHHHhc----CCC------CCCCccEEEEehhhHhhcc
Q 023157 10 VKVHACVGGTSVREDQ--R-----ILQ--AGVHVVVGTPGRVFDMLRR----QSL------RPDYIKMFVLDEADEMLSR 70 (286)
Q Consensus 10 ~~~~~~~g~~~~~~~~--~-----~~~--~~~~iii~Tp~~l~~~~~~----~~~------~~~~~~~iIiDE~h~~~~~ 70 (286)
.....++|+.+..+-- . ... .+..+++.|.+.+.+.+.. +.. ...+.+++++||+|.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc
Confidence 3457888866643321 1 111 2467888888776554321 111 0124689999999977543
Q ss_pred c-cHHHHHHHHHhCCcCccEEEEEeecCh
Q 023157 71 G-FKDQIYDIFQLLPAKVQVGVFSATMPP 98 (286)
Q Consensus 71 ~-~~~~~~~i~~~~~~~~~~i~~SAT~~~ 98 (286)
. ....+..+++.+....+.+++|++.++
T Consensus 210 ~~~q~elf~~~n~l~~~~k~iIitsd~~p 238 (440)
T PRK14088 210 TGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECCCCH
Confidence 2 223344444443222234555554443
No 286
>PRK04296 thymidine kinase; Provisional
Probab=77.07 E-value=6.5 Score=30.08 Aligned_cols=28 Identities=18% Similarity=0.444 Sum_probs=17.3
Q ss_pred eCcHHHHHHHhcCCCCCCCccEEEEehhhHh
Q 023157 37 GTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 67 (286)
Q Consensus 37 ~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~ 67 (286)
..++.+.+.+.. .-.+.++||+||+|.+
T Consensus 63 ~~~~~~~~~~~~---~~~~~dvviIDEaq~l 90 (190)
T PRK04296 63 SSDTDIFELIEE---EGEKIDCVLIDEAQFL 90 (190)
T ss_pred CChHHHHHHHHh---hCCCCCEEEEEccccC
Confidence 344445444443 2235689999999864
No 287
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=77.05 E-value=19 Score=28.29 Aligned_cols=83 Identities=10% Similarity=0.133 Sum_probs=44.0
Q ss_pred eEEEEEcCcchHH--HHHHH-----hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhC
Q 023157 11 KVHACVGGTSVRE--DQRIL-----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL 83 (286)
Q Consensus 11 ~~~~~~g~~~~~~--~~~~~-----~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~ 83 (286)
....++|.....+ -...+ ..+..+++.+...+...+. .....+++|+||+|.+.... ...+..++...
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~liiDdi~~l~~~~-~~~L~~~~~~~ 117 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFD----FDPEAELYAVDDVERLDDAQ-QIALFNLFNRV 117 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHh----hcccCCEEEEeChhhcCchH-HHHHHHHHHHH
Confidence 4567777555433 22222 2345666666655543321 22345799999999865433 33444444443
Q ss_pred CcCcc-EEEEEeecCh
Q 023157 84 PAKVQ-VGVFSATMPP 98 (286)
Q Consensus 84 ~~~~~-~i~~SAT~~~ 98 (286)
....+ +++++++.++
T Consensus 118 ~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 118 RAHGQGALLVAGPAAP 133 (227)
T ss_pred HHcCCcEEEEeCCCCH
Confidence 32333 4666666543
No 288
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=76.79 E-value=3.2 Score=32.48 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=30.6
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
...++|+||++.-.+......+..++....+..|++..|-.
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~ 198 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHN 198 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 35699999999888887778888888888778998887644
No 289
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=76.70 E-value=14 Score=35.28 Aligned_cols=67 Identities=12% Similarity=0.005 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHh----cCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR----SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 211 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 211 (286)
....+..++....+..+-|.+++..-|..-++.+. ..|+++..+.++++.++|...+. .+|+++|..
T Consensus 109 Lva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~~ 179 (830)
T PRK12904 109 LVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGTNN 179 (830)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEECCc
Confidence 33444444555667788899999877776666554 45899999999999998887753 789999963
No 290
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=76.40 E-value=6.6 Score=25.66 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=32.0
Q ss_pred hccCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 149 TLAITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 149 ~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
..+..++++||.+-..+..++..|...|+. +..+.|++.
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 345578999999888899999999999886 788888764
No 291
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=76.05 E-value=12 Score=32.41 Aligned_cols=88 Identities=13% Similarity=0.158 Sum_probs=53.8
Q ss_pred ceEEEEEcCcchHHH--H-------HHHhCCCcEEEeCcHHHHHHHhcC---------CCCCCCccEEEEehhhHhhcc-
Q 023157 10 VKVHACVGGTSVRED--Q-------RILQAGVHVVVGTPGRVFDMLRRQ---------SLRPDYIKMFVLDEADEMLSR- 70 (286)
Q Consensus 10 ~~~~~~~g~~~~~~~--~-------~~~~~~~~iii~Tp~~l~~~~~~~---------~~~~~~~~~iIiDE~h~~~~~- 70 (286)
.....++|+.+..+- . .....+..++..|.+.+.+.+... +-.. ++++++||+++.+...
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~ 191 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKE 191 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCCh
Confidence 567788887774332 1 222235688999988875433211 1123 6899999999987765
Q ss_pred ccHHHHHHHHHhCCcCc-cEEEEEeecCh
Q 023157 71 GFKDQIYDIFQLLPAKV-QVGVFSATMPP 98 (286)
Q Consensus 71 ~~~~~~~~i~~~~~~~~-~~i~~SAT~~~ 98 (286)
.....+..+++.+.... |+++.|..+|.
T Consensus 192 ~~qeefFh~FN~l~~~~kqIvltsdr~P~ 220 (408)
T COG0593 192 RTQEEFFHTFNALLENGKQIVLTSDRPPK 220 (408)
T ss_pred hHHHHHHHHHHHHHhcCCEEEEEcCCCch
Confidence 44566677777765544 45555544443
No 292
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=76.02 E-value=5.8 Score=31.67 Aligned_cols=70 Identities=11% Similarity=0.230 Sum_probs=52.3
Q ss_pred cceEEEecchhhHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec------CCccCCCCCCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD------LLARGIDVQQV 221 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gidi~~~ 221 (286)
-.++|.|.++.-|..+.+...+. +..+.+..|+++...-.+.++. -..|.|+|+ +-+..+++..+
T Consensus 111 vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~v 186 (387)
T KOG0329|consen 111 VSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNV 186 (387)
T ss_pred EEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhc
Confidence 47899999999999888766542 5688999999986655555553 678999996 23455788787
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
.+.++
T Consensus 187 khFvl 191 (387)
T KOG0329|consen 187 KHFVL 191 (387)
T ss_pred ceeeh
Confidence 77764
No 293
>PRK06835 DNA replication protein DnaC; Validated
Probab=75.97 E-value=10 Score=31.90 Aligned_cols=87 Identities=14% Similarity=0.255 Sum_probs=48.4
Q ss_pred eEEEEEcCcchHHH--H-----HHHhCCCcEEEeCcHHHHHHHhcC----C-------CCCCCccEEEEehhhHhhcccc
Q 023157 11 KVHACVGGTSVRED--Q-----RILQAGVHVVVGTPGRVFDMLRRQ----S-------LRPDYIKMFVLDEADEMLSRGF 72 (286)
Q Consensus 11 ~~~~~~g~~~~~~~--~-----~~~~~~~~iii~Tp~~l~~~~~~~----~-------~~~~~~~~iIiDE~h~~~~~~~ 72 (286)
.-..++|..+..+. . ..+..+..|++.|...+...+... . -.+.+++++|||+++......+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t~~ 263 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKITEF 263 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCCCHH
Confidence 45667775553321 1 233457788888887777755321 1 1234679999999986543322
Q ss_pred -HHHHHHHHHhCCc-CccEEEEEeecCh
Q 023157 73 -KDQIYDIFQLLPA-KVQVGVFSATMPP 98 (286)
Q Consensus 73 -~~~~~~i~~~~~~-~~~~i~~SAT~~~ 98 (286)
...+..+++..-. ..++ ++|...++
T Consensus 264 ~~~~Lf~iin~R~~~~k~t-IiTSNl~~ 290 (329)
T PRK06835 264 SKSELFNLINKRLLRQKKM-IISTNLSL 290 (329)
T ss_pred HHHHHHHHHHHHHHCCCCE-EEECCCCH
Confidence 3455556555432 3334 44444443
No 294
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=75.95 E-value=8.9 Score=29.20 Aligned_cols=51 Identities=22% Similarity=0.428 Sum_probs=36.5
Q ss_pred CccEEEEehhhHhhccccH--HHHHHHHHhCCcCccEEEEEeecChhHHHHHH
Q 023157 55 YIKMFVLDEADEMLSRGFK--DQIYDIFQLLPAKVQVGVFSATMPPEALEITR 105 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 105 (286)
..++||+||.--....++. ..+..++...|....+|+..-..++.+.+...
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHH
Confidence 4699999999987766644 67778888877777666666556666655443
No 295
>PRK13766 Hef nuclease; Provisional
Probab=75.60 E-value=22 Score=33.93 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=54.6
Q ss_pred ccCcceEEEecchhhHHHHHHHHhcC-C---CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec------CCccCCCCC
Q 023157 150 LAITQSVIFVNTRRKVDWLTDKMRSR-D---HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD------LLARGIDVQ 219 (286)
Q Consensus 150 ~~~~~~ivf~~~~~~~~~l~~~l~~~-~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gidi~ 219 (286)
.++++++|.++++..++..++.+++. + ..+..++|+.+..+|..++. +.+|+|+|. ....-+++.
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~~~~~~ 130 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAGRISLE 130 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcCCCChh
Confidence 35679999999988887776666553 2 37788999998887765553 357999995 223346677
Q ss_pred CCcEEEEccCCC
Q 023157 220 QVSLVINYDLPT 231 (286)
Q Consensus 220 ~~~~vi~~~~~~ 231 (286)
+++.+|+-.+..
T Consensus 131 ~~~liVvDEaH~ 142 (773)
T PRK13766 131 DVSLLIFDEAHR 142 (773)
T ss_pred hCcEEEEECCcc
Confidence 788888755543
No 296
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=75.13 E-value=7.8 Score=24.20 Aligned_cols=52 Identities=27% Similarity=0.425 Sum_probs=35.6
Q ss_pred ccCceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehh
Q 023157 7 YLGVKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEA 64 (286)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~ 64 (286)
..+.++..++|+.+..++...+. +...|+++|. .....+++..++.+|+-+.
T Consensus 9 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~------~~~~Gi~~~~~~~vi~~~~ 64 (82)
T smart00490 9 ELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATD------VAERGLDLPGVDLVIIYDL 64 (82)
T ss_pred HCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECC------hhhCCcChhcCCEEEEeCC
Confidence 34788999999888776665554 3678888883 2233455666777777665
No 297
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=75.05 E-value=23 Score=33.27 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHhhcC--CCcEEEEecCCcc
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSG--SSRVLITTDLLAR 214 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~T~~~~~ 214 (286)
.+.++..+.+....++=+|.||+-- .+---..+.+. .+.+..+|| ++.+|.++-..+.++ .++||++|--+..
T Consensus 435 vIaFlayLkq~g~~gpHLVVvPsST-leNWlrEf~kwCPsl~Ve~YyG--Sq~ER~~lR~~i~~~~~~ydVllTTY~la~ 511 (941)
T KOG0389|consen 435 VIAFLAYLKQIGNPGPHLVVVPSST-LENWLREFAKWCPSLKVEPYYG--SQDERRELRERIKKNKDDYDVLLTTYNLAA 511 (941)
T ss_pred HHHHHHHHHHcCCCCCcEEEecchh-HHHHHHHHHHhCCceEEEeccC--cHHHHHHHHHHHhccCCCccEEEEEeeccc
Confidence 4555556666666778899998833 33222333333 357888888 558999999999766 7899999954333
No 298
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=74.82 E-value=2.6 Score=37.57 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=23.7
Q ss_pred CCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 53 PDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 53 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
..+.++.||||+|++....|...++-+ .. ++.+++++=||
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALLKTL-EE--PP~hV~FIlAT 156 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALLKTL-EE--PPSHVKFILAT 156 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHhccc-cc--CccCeEEEEec
Confidence 344789999999987666544333322 22 23445555555
No 299
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=74.80 E-value=9.3 Score=36.95 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=57.7
Q ss_pred CCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccC-----CC----cce-EEEEeccCcHHHHHHHHHHh
Q 023157 202 SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF-----GR----KGV-AINFVTRDDERMLFDIQKFY 271 (286)
Q Consensus 202 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~-----~~----~g~-~~~~~~~~~~~~~~~~~~~~ 271 (286)
..+.+++-.++.+|-|.|++-.++-+....|...-.|.+||..|. |. ... .-++.+.........+.+..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 568999999999999999999999999889999999999999885 21 112 23455666777777887777
Q ss_pred chhc
Q 023157 272 NVVI 275 (286)
Q Consensus 272 ~~~~ 275 (286)
+.+.
T Consensus 581 ~~~~ 584 (986)
T PRK15483 581 NSDS 584 (986)
T ss_pred Hhhc
Confidence 5543
No 300
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=74.73 E-value=41 Score=29.82 Aligned_cols=70 Identities=21% Similarity=0.356 Sum_probs=51.7
Q ss_pred cceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccC-CCCCCCc
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARG-IDVQQVS 222 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-idi~~~~ 222 (286)
..++|.+||+.-|..+++.-++. +..+...+++.+... ...+....++++|||. .++.| +.++++.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~----q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k 228 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGA----QLRFIKRGCDILVATPGRLKDLIERGKISLDNCK 228 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhh----hhhhhccCccEEEecCchhhhhhhcceeehhhCc
Confidence 47899999999999999877654 456777788754322 2334456789999994 67777 7888888
Q ss_pred EEEE
Q 023157 223 LVIN 226 (286)
Q Consensus 223 ~vi~ 226 (286)
++++
T Consensus 229 ~~vL 232 (482)
T KOG0335|consen 229 FLVL 232 (482)
T ss_pred EEEe
Confidence 7775
No 301
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=74.59 E-value=24 Score=24.41 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=40.9
Q ss_pred ccCcceEEEecchhhHHHHHHHHhcCC---CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC
Q 023157 150 LAITQSVIFVNTRRKVDWLTDKMRSRD---HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 211 (286)
Q Consensus 150 ~~~~~~ivf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 211 (286)
....++++++++...++...+.+.... ..+..+++......+. ........++++|..
T Consensus 28 ~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~ 88 (144)
T cd00046 28 LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPG 88 (144)
T ss_pred ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEECcH
Confidence 355799999999999888877776543 6777888776544443 223456788888853
No 302
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=74.54 E-value=4.1 Score=34.44 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=27.6
Q ss_pred cEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 57 KMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
.+||||||+.+ ...+++.+++...+..+++++.-.
T Consensus 353 ~FiIIDEaQNL----TpheikTiltR~G~GsKIVl~gd~ 387 (436)
T COG1875 353 SFIIIDEAQNL----TPHELKTILTRAGEGSKIVLTGDP 387 (436)
T ss_pred ceEEEehhhcc----CHHHHHHHHHhccCCCEEEEcCCH
Confidence 59999999986 457788899988888877766543
No 303
>PF15586 Imm47: Immunity protein 47
Probab=74.22 E-value=4.1 Score=28.35 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=34.0
Q ss_pred ccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhh
Q 023157 7 YLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 65 (286)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h 65 (286)
.+++-+....|-....- ....+|.||||+.|.+...+..+.... .++|++|.+
T Consensus 25 ~F~~~l~l~IG~~~~~G-----~d~F~v~VcTP~wL~~~~~~~~~~~gr-~~LIv~~yd 77 (116)
T PF15586_consen 25 NFCFWLELDIGPEGEDG-----SDYFQVFVCTPKWLSKNCWKPGILWGR-HMLIVEEYD 77 (116)
T ss_pred ceEEEEEEEECCCCCCc-----cceEEEEEEcHHHHHHhhcCCcceecc-ceEEEecCC
Confidence 34455555555433221 234789999999999887775533222 589999987
No 304
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=74.02 E-value=9.9 Score=34.59 Aligned_cols=122 Identities=12% Similarity=0.137 Sum_probs=82.5
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-CccC-----CCCCCCcEEE
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-LARG-----IDVQQVSLVI 225 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~G-----idi~~~~~vi 225 (286)
.+-+||..|-..-.+-=.+.|+..|+.+..+++.++.+++..++..+..|..++|--++. +... +.--.+..++
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~v 136 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVA 136 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEE
Confidence 468999999988777777788899999999999999999999999999999998866641 2111 1111223333
Q ss_pred E--------ccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhc
Q 023157 226 N--------YDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVI 275 (286)
Q Consensus 226 ~--------~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (286)
+ +| .+.+--+.++|+....-..-.+..++-..+......|.+.+....
T Consensus 137 IDEAHCiSqWG--hdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~ 192 (590)
T COG0514 137 IDEAHCISQWG--HDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQD 192 (590)
T ss_pred echHHHHhhcC--CccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCC
Confidence 2 22 122223344445433223456777777778888888887777654
No 305
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=73.99 E-value=1.7 Score=41.72 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=42.9
Q ss_pred cccccccCceEEEEEc-CcchHHHHHHHhCCCcEEEeCcHHH-HHHHhcCC------CCCCCccEEEEehhhHhh
Q 023157 2 RALGDYLGVKVHACVG-GTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQS------LRPDYIKMFVLDEADEML 68 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~iii~Tp~~l-~~~~~~~~------~~~~~~~~iIiDE~h~~~ 68 (286)
..+.+++|+.+.++.. +....+....+ .+||..+|..-+ +++++.+- .....+.+.||||++.++
T Consensus 231 gply~fLGLsvg~i~~~~~~~~~rr~aY--~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 231 GPLYEFHGLSVDCIDKHQPNSEARRKAY--NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred HHHHHHhCCceeecCCCCCCHHHHHHhC--CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 4466788999998876 43444443333 689999998666 34444322 123447899999999754
No 306
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=73.70 E-value=9.2 Score=33.23 Aligned_cols=89 Identities=13% Similarity=0.281 Sum_probs=45.7
Q ss_pred eEEEEEcCcchHHHH--H-----HHhC--CCcEEEeCcHHHHHHHhc----CC-----CCCCCccEEEEehhhHhhccc-
Q 023157 11 KVHACVGGTSVREDQ--R-----ILQA--GVHVVVGTPGRVFDMLRR----QS-----LRPDYIKMFVLDEADEMLSRG- 71 (286)
Q Consensus 11 ~~~~~~g~~~~~~~~--~-----~~~~--~~~iii~Tp~~l~~~~~~----~~-----~~~~~~~~iIiDE~h~~~~~~- 71 (286)
....++|..+..+-- . .... +..++..|.+.+...+.. .. -.+.+.+++++||+|.+....
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~ 216 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKER 216 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCCHH
Confidence 456778866643321 1 1111 467878787665543221 11 012346899999999775432
Q ss_pred cHHHHHHHHHhCCcCccEEEEEeecChh
Q 023157 72 FKDQIYDIFQLLPAKVQVGVFSATMPPE 99 (286)
Q Consensus 72 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 99 (286)
....+..++..+....+.+.+|++.++.
T Consensus 217 ~~~~l~~~~n~~~~~~~~iiits~~~p~ 244 (405)
T TIGR00362 217 TQEEFFHTFNALHENGKQIVLTSDRPPK 244 (405)
T ss_pred HHHHHHHHHHHHHHCCCCEEEecCCCHH
Confidence 1233444444432222345566665544
No 307
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=72.92 E-value=7.7 Score=25.63 Aligned_cols=38 Identities=11% Similarity=0.082 Sum_probs=30.3
Q ss_pred ccCcceEEEecchhhHHHHHHHHhcCCC-eeEEecCCCC
Q 023157 150 LAITQSVIFVNTRRKVDWLTDKMRSRDH-TVSATHGDMD 187 (286)
Q Consensus 150 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 187 (286)
.+..+++++|.+-..+...+..|+..|+ ++..+.|++.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 3456899999998888888889988887 5777777763
No 308
>PHA00350 putative assembly protein
Probab=72.43 E-value=5.8 Score=34.20 Aligned_cols=41 Identities=10% Similarity=0.283 Sum_probs=28.9
Q ss_pred cEEEEehhhHhhcccc-----------------------HHHHHHHHHhCCcCccEEEEEeecC
Q 023157 57 KMFVLDEADEMLSRGF-----------------------KDQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~-----------------------~~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
.+|||||||.+..... ...+..+........-++++|-.+.
T Consensus 83 aLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~ 146 (399)
T PHA00350 83 ALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIR 146 (399)
T ss_pred CEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHH
Confidence 5999999998764321 2345555556667788999988764
No 309
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=72.24 E-value=4.5 Score=37.30 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=24.5
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 92 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 92 (286)
...+++||||+|.+.... .+.+.+.+..-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 346899999999876544 44555566655555555554
No 310
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=72.16 E-value=9.2 Score=29.05 Aligned_cols=38 Identities=8% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 92 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 92 (286)
....+|||||+|.+.... ...+...+...++...++++
T Consensus 95 ~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred CCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEE
Confidence 446899999999875443 33444444443333434443
No 311
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=71.56 E-value=44 Score=26.71 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=65.1
Q ss_pred cCcceEEEecc------------hhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc---CCCcEEEEecCCccC
Q 023157 151 AITQSVIFVNT------------RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS---GSSRVLITTDLLARG 215 (286)
Q Consensus 151 ~~~~~ivf~~~------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~~~vlv~T~~~~~G 215 (286)
+.+.++|+.+. ..+++.+++.|+..|+.+. .+..++..+-.+.++.|.+ ...+++++. .++.|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVE-VKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEE-EeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCC
Confidence 34556666653 4679999999999999875 5777788888888888864 334444444 55677
Q ss_pred CCCCCCcEEEEcc-CCCCcchhhhhhc--cccc-CCCcceEEEEeccC
Q 023157 216 IDVQQVSLVINYD-LPTQPENYLHRIG--RSGR-FGRKGVAINFVTRD 259 (286)
Q Consensus 216 idi~~~~~vi~~~-~~~s~~~~~Q~~G--R~~R-~~~~g~~~~~~~~~ 259 (286)
.. +.++-.| .+-+..++.+... ++-- .|++..+++-.++.
T Consensus 86 ~~----~~l~~~D~~~v~l~~i~~~f~~~~~~sl~~kPKl~~iqACRg 129 (243)
T cd00032 86 EE----GGIYGTDGDVVPIDEITSLFNGDNCPSLAGKPKLFFIQACRG 129 (243)
T ss_pred CC----CEEEEecCcEEEHHHHHHhhccCCCccccCCCcEEEEECCCC
Confidence 54 6666666 4556667777764 3221 13444444444443
No 312
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=71.18 E-value=3.6 Score=31.54 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=21.0
Q ss_pred cEEEEehhhHhhccccH------HHHHHHHHhCCcCccEEEEEeecC
Q 023157 57 KMFVLDEADEMLSRGFK------DQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~~------~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
.++|+||||.+...... ..+..+........-++++|-.+.
T Consensus 81 ~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~ 127 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPS 127 (193)
T ss_dssp -EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GG
T ss_pred cEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHH
Confidence 69999999987644211 223222222334556777777664
No 313
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=70.37 E-value=9.8 Score=34.10 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=43.5
Q ss_pred cccCceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhH
Q 023157 6 DYLGVKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE 66 (286)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~ 66 (286)
.+-++.+..+||..+..++.+.+. +..+++||| +++.++ +++.++.+||.+++..
T Consensus 409 ~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 409 IYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred hccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 445789999999988766666554 379999999 666654 8999999999987764
No 314
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.31 E-value=6.2 Score=36.45 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=24.6
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
..+++||||+|.+.... .+.+.+.+...+....+|+.|
T Consensus 118 k~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 46899999999875544 345555666555555555544
No 315
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.21 E-value=9.3 Score=34.08 Aligned_cols=39 Identities=10% Similarity=0.229 Sum_probs=23.4
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
...+++||||+|.+.... .+.+.+.+..-++...+++.|
T Consensus 115 ~~~KVvIIDEah~Ls~~A-~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSA-FNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHhCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 456899999999875543 234444455444444444443
No 316
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=70.06 E-value=22 Score=33.87 Aligned_cols=64 Identities=16% Similarity=0.144 Sum_probs=47.1
Q ss_pred HHHHHHHhhccCcceEEEecchhhHHHHHHHHh----cCCCeeEEecCCCC-HHHHHHHHHHhhcCCCcEEEEec
Q 023157 141 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR----SRDHTVSATHGDMD-QNTRDIIMREFRSGSSRVLITTD 210 (286)
Q Consensus 141 ~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~-~~~r~~~~~~f~~~~~~vlv~T~ 210 (286)
..+-.++....+..+.|.++++.-|..-++.+. ..|+++..+.|+++ ..+|.... ..+|+++|.
T Consensus 108 a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 108 ATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred HHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 334444455678899999999887777766554 45899999999999 77765432 378999994
No 317
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=70.02 E-value=21 Score=36.62 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=52.3
Q ss_pred CcceEEEecchhhHHHHHHHHhc----------------CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC----
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRS----------------RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL---- 211 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~----------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~---- 211 (286)
+.++|+.+|++.-+....+.|+. .++.+...||+++..+|.+.++ ...+|||+|+-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----NPPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----CCCCEEEecHHHHHH
Confidence 45799999999888877776642 2578899999999988866544 46789999962
Q ss_pred -Cc-cC-CCCCCCcEEEE
Q 023157 212 -LA-RG-IDVQQVSLVIN 226 (286)
Q Consensus 212 -~~-~G-idi~~~~~vi~ 226 (286)
+. .+ -.+.++++||+
T Consensus 113 LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 113 MLTSRARETLRGVETVII 130 (1490)
T ss_pred HHhhhhhhhhccCCEEEE
Confidence 22 22 35678888885
No 318
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=69.69 E-value=19 Score=34.13 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=50.5
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC---CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-CCccCC---------C
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR---DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGI---------D 217 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gi---------d 217 (286)
++.++++.+|++.-|....+.++.. ++.+..++|+.+.++|..+ + ...+|+|+|+ .+..++ .
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~-~~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA----R-EHARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH----h-cCCCEEEEChHHHHHhhccchhHHHHH
Confidence 3468999999999999888877764 5678889999987766332 2 2468999996 222221 1
Q ss_pred CCCCcEEEE
Q 023157 218 VQQVSLVIN 226 (286)
Q Consensus 218 i~~~~~vi~ 226 (286)
+.++++||+
T Consensus 155 l~~l~~vVi 163 (742)
T TIGR03817 155 LRRLRYVVI 163 (742)
T ss_pred HhcCCEEEE
Confidence 557788875
No 319
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=69.64 E-value=3 Score=39.20 Aligned_cols=65 Identities=26% Similarity=0.443 Sum_probs=46.6
Q ss_pred CcccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHH-HHHHhcCC------CCCCCccEEEEehhhHh
Q 023157 1 MRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQS------LRPDYIKMFVLDEADEM 67 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l-~~~~~~~~------~~~~~~~~iIiDE~h~~ 67 (286)
|+++.+++|+.+.....+.+.+++...+ .+||..+|...+ +++++.+- .....+.+-|+||++-+
T Consensus 141 m~~l~~~LGlsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 141 MGPLYEFLGLSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred HHHHHHHcCCceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 3567788999999999999888777665 578999998766 33333321 12334678888888864
No 320
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.48 E-value=4.9 Score=36.93 Aligned_cols=39 Identities=15% Similarity=0.357 Sum_probs=23.1
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
..++++||||+|.+....+ +.+.+.+..-+....+|+.|
T Consensus 123 g~~KV~IIDEvh~Ls~~a~-NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAF-NAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHhcccCCCCeEEEEEE
Confidence 3468999999998765442 33444444444444455444
No 321
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=69.27 E-value=8.8 Score=25.32 Aligned_cols=36 Identities=11% Similarity=0.082 Sum_probs=29.1
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
+.++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 468999999877777888889888988777777763
No 322
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.19 E-value=5.5 Score=38.11 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=24.3
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 92 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 92 (286)
...+++||||+|.+.... .+.+.+.+..-+...++|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 346899999999875433 35555566555555555554
No 323
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=69.18 E-value=11 Score=29.07 Aligned_cols=39 Identities=13% Similarity=0.168 Sum_probs=22.9
Q ss_pred CCCccEEEEehhhHhhccccHHHHHHHHHhCCc-CccEEEEEee
Q 023157 53 PDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA-KVQVGVFSAT 95 (286)
Q Consensus 53 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT 95 (286)
....++|||||+..+. ...+..++...+. ..+++++--+
T Consensus 91 ~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~klilvGD~ 130 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAKLILVGDP 130 (196)
T ss_dssp -TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-EEEEEE-T
T ss_pred CCcccEEEEecccccC----HHHHHHHHHHHHhcCCEEEEECCc
Confidence 4456899999999764 3445566666654 5666666554
No 324
>PLN03025 replication factor C subunit; Provisional
Probab=68.81 E-value=6.5 Score=32.89 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=25.6
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeec
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 96 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 96 (286)
...+++|+||+|.+.... ...+.+.+...+...++++ +++.
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il-~~n~ 138 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFAL-ACNT 138 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEE-EeCC
Confidence 346899999999876443 3455566665555555444 4443
No 325
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.79 E-value=8.1 Score=35.32 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=25.1
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
...+++||||+|.+.... .+.+.+.+...+....+|+.|
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 456899999999875543 344555555555555555555
No 326
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=68.65 E-value=8.7 Score=25.77 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=40.8
Q ss_pred eEEEecchhhHHHHHHHHhcCCCeeEEecCCCCH------------HHHHHHHHHhhcCCCcEEEEecCCccC
Q 023157 155 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQ------------NTRDIIMREFRSGSSRVLITTDLLARG 215 (286)
Q Consensus 155 ~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~------------~~r~~~~~~f~~~~~~vlv~T~~~~~G 215 (286)
.++.+.....+..+++.+...+..+....|-+-. ..+.+.+.....+.-.|++|||.-.+|
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EG 73 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREG 73 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHH
Confidence 4788888899999999997555566666665411 122455555545667899999987666
No 327
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.50 E-value=6.1 Score=35.01 Aligned_cols=38 Identities=18% Similarity=0.410 Sum_probs=21.3
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
...++||||+|.+....+ +.+.+.+..-+ .+++++-||
T Consensus 121 ~~KV~IIDEah~Ls~~A~-NALLKtLEEPp--~~viFILaT 158 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQSF-NALLKTLEEPP--AHIVFILAT 158 (484)
T ss_pred CCEEEEEechhhcCHHHH-HHHHHHhhcCC--CceEEEeec
Confidence 457999999998755443 33333333322 344444344
No 328
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=68.48 E-value=4.2 Score=37.59 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=55.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc---CCCcEEEEecCCccC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS---GSSRVLITTDLLARG 215 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~~~vlv~T~~~~~G 215 (286)
.++++++|..-....+-+-..+...+ ....+.|.....+|...+.+|+. .....|.+|.+.+.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 67899999999999998888888888 88999999999999999999983 346789999987765
No 329
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=68.47 E-value=6.8 Score=34.61 Aligned_cols=89 Identities=15% Similarity=0.281 Sum_probs=45.6
Q ss_pred eEEEEEcCcchHHHH--H-----HHhC--CCcEEEeCcHHHHHHHh----cCC-----CCCCCccEEEEehhhHhhccc-
Q 023157 11 KVHACVGGTSVREDQ--R-----ILQA--GVHVVVGTPGRVFDMLR----RQS-----LRPDYIKMFVLDEADEMLSRG- 71 (286)
Q Consensus 11 ~~~~~~g~~~~~~~~--~-----~~~~--~~~iii~Tp~~l~~~~~----~~~-----~~~~~~~~iIiDE~h~~~~~~- 71 (286)
....++|..+..+-- . .... +..++..|.+.+.+.+. ... -.+.+.+++++||+|.+....
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~~~ 228 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGKER 228 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCCHH
Confidence 456778866643321 1 1111 46677777766544321 111 023357899999999875432
Q ss_pred cHHHHHHHHHhCCcCccEEEEEeecChh
Q 023157 72 FKDQIYDIFQLLPAKVQVGVFSATMPPE 99 (286)
Q Consensus 72 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 99 (286)
....+..++..+....+.+++|++.++.
T Consensus 229 ~~~~l~~~~n~l~~~~~~iiits~~~p~ 256 (450)
T PRK00149 229 TQEEFFHTFNALHEAGKQIVLTSDRPPK 256 (450)
T ss_pred HHHHHHHHHHHHHHCCCcEEEECCCCHH
Confidence 2234444444432222335556655543
No 330
>PRK04132 replication factor C small subunit; Provisional
Probab=68.28 E-value=10 Score=36.31 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=26.0
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
+..++|+||+|.+... ..+.+.+++...+.++.+++.+.
T Consensus 630 ~~KVvIIDEaD~Lt~~-AQnALLk~lEep~~~~~FILi~N 668 (846)
T PRK04132 630 SFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSCN 668 (846)
T ss_pred CCEEEEEECcccCCHH-HHHHHHHHhhCCCCCeEEEEEeC
Confidence 4689999999987543 34566666666655665555543
No 331
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=67.95 E-value=5.4 Score=35.53 Aligned_cols=38 Identities=11% Similarity=0.060 Sum_probs=22.9
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVF 92 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 92 (286)
.+.+++|+||+|.+.+......+..-....+ +++++.+
T Consensus 122 ~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r~-~pl~~~I 159 (477)
T PF03354_consen 122 LNPSLAIFDELHAHKDDELYDALESGMGARP-NPLIIII 159 (477)
T ss_pred CCCceEEEeCCCCCCCHHHHHHHHhhhccCC-CceEEEE
Confidence 3468999999998765444444444444433 4544444
No 332
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=67.79 E-value=10 Score=25.29 Aligned_cols=38 Identities=11% Similarity=0.188 Sum_probs=29.1
Q ss_pred ccCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 150 LAITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 150 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
.+..+++|+|.+-..+...+..|...|+. +..+.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 45568999998877777788889888884 677777754
No 333
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=67.75 E-value=8.5 Score=32.03 Aligned_cols=39 Identities=10% Similarity=0.117 Sum_probs=25.6
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
..++||+||+|.+........+..++...+...++++.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 458999999998733333455666666666666555544
No 334
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=67.49 E-value=18 Score=33.20 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=47.1
Q ss_pred eEEEEEcCcchHH--HHH-----H--HhCCCcEEEeCcHHHHHHHhc----CC-----CCCCCccEEEEehhhHhhccc-
Q 023157 11 KVHACVGGTSVRE--DQR-----I--LQAGVHVVVGTPGRVFDMLRR----QS-----LRPDYIKMFVLDEADEMLSRG- 71 (286)
Q Consensus 11 ~~~~~~g~~~~~~--~~~-----~--~~~~~~iii~Tp~~l~~~~~~----~~-----~~~~~~~~iIiDE~h~~~~~~- 71 (286)
....++|.....+ ... . ...+..+++.|.+.+.+.+.. +. -.+.++++|+|||+|.+....
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES 394 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence 4467788655332 211 1 112567888887766543321 11 123457999999999875432
Q ss_pred cHHHHHHHHHhCCc-CccEEEEEeecC
Q 023157 72 FKDQIYDIFQLLPA-KVQVGVFSATMP 97 (286)
Q Consensus 72 ~~~~~~~i~~~~~~-~~~~i~~SAT~~ 97 (286)
....+..+++.+.. +.++|+.|-.++
T Consensus 395 tqeeLF~l~N~l~e~gk~IIITSd~~P 421 (617)
T PRK14086 395 TQEEFFHTFNTLHNANKQIVLSSDRPP 421 (617)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCh
Confidence 23445555555433 345555444443
No 335
>PRK08116 hypothetical protein; Validated
Probab=67.47 E-value=13 Score=30.27 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=44.5
Q ss_pred EEEEEcCcchHHHH-------HHHhCCCcEEEeCcHHHHHHHhcCC-----------C-CCCCccEEEEehhhHh--hcc
Q 023157 12 VHACVGGTSVREDQ-------RILQAGVHVVVGTPGRVFDMLRRQS-----------L-RPDYIKMFVLDEADEM--LSR 70 (286)
Q Consensus 12 ~~~~~g~~~~~~~~-------~~~~~~~~iii~Tp~~l~~~~~~~~-----------~-~~~~~~~iIiDE~h~~--~~~ 70 (286)
...++|.....+.- .....+..+++.+...+++.+.... + .+.+.+++|+||++.. .++
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~~ 195 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTEW 195 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCHH
Confidence 35677755533211 1222356677777666655543210 0 2456799999999642 222
Q ss_pred ccHHHHHHHHHhC-CcCccEEEEEeecChh
Q 023157 71 GFKDQIYDIFQLL-PAKVQVGVFSATMPPE 99 (286)
Q Consensus 71 ~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~ 99 (286)
. ...+..++... ....++|+.|...+.+
T Consensus 196 ~-~~~l~~iin~r~~~~~~~IiTsN~~~~e 224 (268)
T PRK08116 196 A-REKVYNIIDSRYRKGLPTIVTTNLSLEE 224 (268)
T ss_pred H-HHHHHHHHHHHHHCCCCEEEECCCCHHH
Confidence 2 23444555443 2334455555544433
No 336
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=67.37 E-value=13 Score=35.18 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=56.2
Q ss_pred CCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccC--CCcc-----------eEEEEeccCcHHHHHHHH
Q 023157 202 SSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRF--GRKG-----------VAINFVTRDDERMLFDIQ 268 (286)
Q Consensus 202 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~--~~~g-----------~~~~~~~~~~~~~~~~~~ 268 (286)
..+.|.+--++.+|-|-|+|=.++-+....|..+=.|.+||..|. .+.| .-.+++...+......+.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 468999999999999999999999999999999999999999984 2222 233566667777777776
Q ss_pred HHhch
Q 023157 269 KFYNV 273 (286)
Q Consensus 269 ~~~~~ 273 (286)
+..+.
T Consensus 563 kEI~~ 567 (985)
T COG3587 563 KEIND 567 (985)
T ss_pred HHHHH
Confidence 55443
No 337
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=66.64 E-value=9.7 Score=35.08 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=27.8
Q ss_pred ccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 56 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
+++|||||+.++. ...+..+++.+++..++|++.-.
T Consensus 266 ~dvlIvDEaSMvd----~~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 266 LDVLVVDEASMVD----LPMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred CCeEEEChHhccc----HHHHHHHHHhcccCCEEEEecch
Confidence 5899999999752 45566777788888888888655
No 338
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=66.62 E-value=25 Score=31.80 Aligned_cols=72 Identities=14% Similarity=0.196 Sum_probs=47.1
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CC-ccCCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LL-ARGIDVQQ 220 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~-~~Gidi~~ 220 (286)
.+..++|.+|++.-|..+.+.++.. +..+..+.|+.+..++.. .+. ....|+|+|+ .+ ..++++.+
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~---~l~-~~~~IiV~TPgrL~~~l~~~~~~l~~ 270 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLY---RIQ-QGVELIVGTPGRLIDLLSKHDIELDN 270 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHH---Hhc-CCCCEEEECHHHHHHHHHcCCccchh
Confidence 3457999999999988777665543 455666677665444322 222 3478999994 22 23577778
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
+.++|+
T Consensus 271 v~~lVi 276 (518)
T PLN00206 271 VSVLVL 276 (518)
T ss_pred eeEEEe
Confidence 887775
No 339
>PRK08181 transposase; Validated
Probab=66.02 E-value=15 Score=29.98 Aligned_cols=70 Identities=10% Similarity=0.160 Sum_probs=39.7
Q ss_pred hCCCcEEEeCcHHHHHHHhcC----CC-----CCCCccEEEEehhhHhhccc-cHHHHHHHHHhCCcCccEEEEEeecCh
Q 023157 29 QAGVHVVVGTPGRVFDMLRRQ----SL-----RPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLPAKVQVGVFSATMPP 98 (286)
Q Consensus 29 ~~~~~iii~Tp~~l~~~~~~~----~~-----~~~~~~~iIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~i~~SAT~~~ 98 (286)
..+..+++.|...|...+... .. .+...+++|+||++...... ....+..+++.......+|+.|..++.
T Consensus 132 ~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~ 211 (269)
T PRK08181 132 ENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFG 211 (269)
T ss_pred HcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 346778887776666654321 11 23457899999999654332 224455555554333445555555443
No 340
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=65.99 E-value=9.9 Score=34.83 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=27.3
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
.+++|||||+-++. ...+..+++.++...++|++.-.
T Consensus 259 ~~dvlIiDEaSMvd----~~l~~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 259 PLDVLVVDEASMVD----LPLMAKLLKALPPNTKLILLGDK 295 (586)
T ss_pred cccEEEEcccccCC----HHHHHHHHHhcCCCCEEEEECCh
Confidence 46899999999763 34566677777778887776544
No 341
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=65.92 E-value=9 Score=32.59 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=26.5
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
....++||||+|.+.... .+.+.+.+..-+.+..++++|..
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEECC
Confidence 346799999999875443 45566666665555555666533
No 342
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=64.87 E-value=21 Score=30.91 Aligned_cols=66 Identities=20% Similarity=0.362 Sum_probs=35.4
Q ss_pred CCcEEEeCcH-------HHHHHH---hcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecChh
Q 023157 31 GVHVVVGTPG-------RVFDML---RRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPE 99 (286)
Q Consensus 31 ~~~iii~Tp~-------~l~~~~---~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 99 (286)
.+|+.+.+|+ .+.++. ...+. ....+++||||+|.+.... .+.+.+.+..-+.+. ++++++|-+..
T Consensus 84 hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~-~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~ 159 (394)
T PRK07940 84 HPDVRVVAPEGLSIGVDEVRELVTIAARRPS-TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPED 159 (394)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHhCcc-cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHH
Confidence 4678777764 222222 22222 2345799999999885443 344555555433343 45555554333
No 343
>PRK06620 hypothetical protein; Validated
Probab=64.87 E-value=8.7 Score=30.07 Aligned_cols=79 Identities=10% Similarity=0.084 Sum_probs=39.3
Q ss_pred eEEEEEcCcch--HHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCcc
Q 023157 11 KVHACVGGTSV--REDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 88 (286)
Q Consensus 11 ~~~~~~g~~~~--~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 88 (286)
+...++|..+. ......+....+..+.+....... ...+.+++++||+|.+. ...+..+++.+..+.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~------~~~~~d~lliDdi~~~~----~~~lf~l~N~~~e~g~ 114 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEE------ILEKYNAFIIEDIENWQ----EPALLHIFNIINEKQK 114 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchh------HHhcCCEEEEeccccch----HHHHHHHHHHHHhcCC
Confidence 44677775553 333344444444444443222111 12234799999999542 1344455544433344
Q ss_pred EEEEEeecChh
Q 023157 89 VGVFSATMPPE 99 (286)
Q Consensus 89 ~i~~SAT~~~~ 99 (286)
.+++|++-+|.
T Consensus 115 ~ilits~~~p~ 125 (214)
T PRK06620 115 YLLLTSSDKSR 125 (214)
T ss_pred EEEEEcCCCcc
Confidence 56666654433
No 344
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=64.83 E-value=40 Score=32.74 Aligned_cols=55 Identities=11% Similarity=-0.057 Sum_probs=43.3
Q ss_pred cCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 211 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 211 (286)
.+..++|.++++.-|...++.+.. .|.++..+.|+++.+++...+ ..+|+++|+.
T Consensus 134 ~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~DIVygTPg 192 (970)
T PRK12899 134 TGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCDVVYGTAS 192 (970)
T ss_pred hcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECCC
Confidence 345688899999998888887754 378899999999988876443 3789999974
No 345
>PRK07413 hypothetical protein; Validated
Probab=64.64 E-value=17 Score=31.17 Aligned_cols=51 Identities=22% Similarity=0.419 Sum_probs=37.2
Q ss_pred CCccEEEEehhhHhhccccH--HHHHHHHHhCCcCccEEEEEeecChhHHHHH
Q 023157 54 DYIKMFVLDEADEMLSRGFK--DQIYDIFQLLPAKVQVGVFSATMPPEALEIT 104 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 104 (286)
..+++||+||+-...+.++. ..+..+++..|....+|+.--.+|+.+.+..
T Consensus 124 g~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~A 176 (382)
T PRK07413 124 GLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIA 176 (382)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhC
Confidence 44799999999988777644 6777788888777777766666666655543
No 346
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.57 E-value=9 Score=35.04 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=25.3
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
...+++||||+|.+.... .+.+.+.+..-+....+|+.|
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 456899999999775443 355556666555555555544
No 347
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=64.01 E-value=8.8 Score=26.80 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=31.0
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCC--eeEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDH--TVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~ 187 (286)
...++++||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 446899999988888889999999998 5888888873
No 348
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=64.00 E-value=13 Score=24.60 Aligned_cols=36 Identities=3% Similarity=0.119 Sum_probs=28.8
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCC-eeEEecCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDH-TVSATHGDM 186 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 186 (286)
...+++++|.+-..+...+..|.+.|+ ++..+.|++
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~ 89 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGL 89 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCH
Confidence 346899999998778888999988776 577788875
No 349
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=63.86 E-value=15 Score=32.23 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=30.3
Q ss_pred CCCCccEE-EEehhhHhhccc---cHHHHHHHHHhCC-cCccEEEEEeecCh
Q 023157 52 RPDYIKMF-VLDEADEMLSRG---FKDQIYDIFQLLP-AKVQVGVFSATMPP 98 (286)
Q Consensus 52 ~~~~~~~i-IiDE~h~~~~~~---~~~~~~~i~~~~~-~~~~~i~~SAT~~~ 98 (286)
+++..++| .|||||.+++.. +...+..+.+... +..-+.++|-+|.+
T Consensus 251 D~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~P~D 302 (502)
T PF05872_consen 251 DLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQNPTD 302 (502)
T ss_pred CCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCCCCC
Confidence 45555664 599999887654 3455555554443 45668888888753
No 350
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.74 E-value=7.5 Score=35.11 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=25.1
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
...+++||||+|.+.... .+.+.+.+...+....+|+.|
T Consensus 118 ~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 446899999999876543 344555555555556566655
No 351
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=63.69 E-value=9.5 Score=35.95 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=26.8
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
..++||+||++++.. ..+..+++..+...+++++.-+
T Consensus 416 ~~~llIvDEaSMvd~----~~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 416 DCDLLIVDESSMMDT----WLALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred cCCEEEEeccccCCH----HHHHHHHHhCCCCCEEEEECcc
Confidence 468999999997643 3445666677777888877654
No 352
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=63.51 E-value=41 Score=22.33 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=40.8
Q ss_pred ceEEEecchh----h-HHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCC-CCCCCcEEEE
Q 023157 154 QSVIFVNTRR----K-VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI-DVQQVSLVIN 226 (286)
Q Consensus 154 ~~ivf~~~~~----~-~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi-di~~~~~vi~ 226 (286)
++++.|.+-- . +..+.+.+.++|+.+.+.|...+.. +... ...+++++|.-+...+ ++|.+..+.+
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~------~~~~-~~~D~iv~t~~~~~~~~~ip~~~~~~l 75 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEI------ETYM-DGVHLICTTARVDRSFGDIPLVHGMPF 75 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHH------hhhc-CCCCEEEECCccccccCCCCEEEEeec
Confidence 5778886622 2 4566677788899888888655422 1111 3568999997666655 4665444443
No 353
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=63.48 E-value=14 Score=25.18 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=29.3
Q ss_pred cCcceEEEecch--hhHHHHHHHHhcCCCeeEEecCCCC
Q 023157 151 AITQSVIFVNTR--RKVDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
+..++++||.+. ..+...+..|+..|+.+..+.|++.
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 456899999865 3678888899999988888888763
No 354
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=63.35 E-value=7.8 Score=35.24 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=29.9
Q ss_pred cCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhC-CcCccEEEEEeec
Q 023157 48 RQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSATM 96 (286)
Q Consensus 48 ~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~ 96 (286)
.+.+.-++++++++||+|-+... .+..++-.+ .+++++|++|.|-
T Consensus 292 ~NsiRGQ~fnll~VDEA~FI~~~----a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 292 TNSIRGQNFHLLLVDEAHFIKKD----AFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred CccccCCCCCEEEEehhhccCHH----HHHHhhhhhcccCceEEEEeCCC
Confidence 35566778999999999954322 233333222 3578899999884
No 355
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=62.85 E-value=9.5 Score=32.62 Aligned_cols=39 Identities=13% Similarity=0.360 Sum_probs=23.0
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
...+++||||+|.+....+ +.+.+.+...+....+++.|
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 3457999999998764432 33444444444445455543
No 356
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=62.68 E-value=9.6 Score=34.39 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=25.9
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
...+++||||+|.+.... .+.+.+.+...++...+++.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 456899999999875443 345556666656666666555
No 357
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=62.22 E-value=62 Score=23.98 Aligned_cols=71 Identities=27% Similarity=0.441 Sum_probs=43.3
Q ss_pred CcceEEEecchhhHHHHHHHHhcCC-----CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEe-----cCCccC-CCCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRD-----HTVSATHGDMDQNTRDIIMREFRSGSSRVLITT-----DLLARG-IDVQQ 220 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-----~~~~~G-idi~~ 220 (286)
..++++.+++...+...++.+.... .....+++... ...+..+..+...++++| +....+ .+...
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~ 129 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSN 129 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhH
Confidence 4689999999888888877776543 33444444332 334445556666899999 222222 34555
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
.+.+|+
T Consensus 130 ~~~iIi 135 (201)
T smart00487 130 VDLVIL 135 (201)
T ss_pred CCEEEE
Confidence 666664
No 358
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=62.05 E-value=15 Score=24.07 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=29.4
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDM 186 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 186 (286)
+..+++++|.+...+...+..|+..|+. +..+.|++
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 4568999999988999999999998874 66777765
No 359
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=62.01 E-value=23 Score=31.31 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=39.0
Q ss_pred cCcceEEEecchhhHHHHHHHHhc----C-CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS----R-DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 210 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~----~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 210 (286)
++-.++|.|+++.-|...+..++. + ++.+..+-|+.... .-.+.... .+++||||+
T Consensus 153 ~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~---~e~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 153 NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFS---VEADKLVK-GCNILIATP 213 (543)
T ss_pred CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccch---HHHHHhhc-cccEEEeCC
Confidence 445899999999988877665543 3 67788888886532 22233333 789999996
No 360
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=61.97 E-value=80 Score=25.20 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=58.1
Q ss_pred cCcceEEEecc-----------hhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcC----CCcEEEEecCCccC
Q 023157 151 AITQSVIFVNT-----------RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG----SSRVLITTDLLARG 215 (286)
Q Consensus 151 ~~~~~ivf~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~----~~~vlv~T~~~~~G 215 (286)
+.+.+||+.+. ..+++.+++.|+..|+.+. ++.+++..+-.+.++.|.+. ..+++++. .++.|
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVH-VKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 44567777775 3479999999999999875 56778888888888888652 35566555 66777
Q ss_pred CCCCCCcEEEEccC-CCCcchhhhhh
Q 023157 216 IDVQQVSLVINYDL-PTQPENYLHRI 240 (286)
Q Consensus 216 idi~~~~~vi~~~~-~~s~~~~~Q~~ 240 (286)
. .+.++=.|. +-+..++....
T Consensus 85 ~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 85 E----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred C----CCeEEEecCCEEEHHHHHHhc
Confidence 3 256655554 44555665555
No 361
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=61.90 E-value=10 Score=35.23 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=25.2
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
...+++||||+|.+.... .+.+.+.+...+....+|+.|
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 346899999999765433 344555666555566566555
No 362
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=61.75 E-value=15 Score=24.07 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=27.1
Q ss_pred CcceEEEecc--hhhHHHHHHHHhcCCC-eeEEecCCCC
Q 023157 152 ITQSVIFVNT--RRKVDWLTDKMRSRDH-TVSATHGDMD 187 (286)
Q Consensus 152 ~~~~ivf~~~--~~~~~~l~~~l~~~~~-~~~~~~~~~~ 187 (286)
..+++++|.+ +..+...+..|...|+ ++..+.|++.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 5689999988 4447788888988886 4667777763
No 363
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=61.68 E-value=54 Score=30.68 Aligned_cols=101 Identities=11% Similarity=0.166 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC-CCe-eEEe--------------------c-----CCCCHHHH
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR-DHT-VSAT--------------------H-----GDMDQNTR 191 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~-~~~-~~~~--------------------~-----~~~~~~~r 191 (286)
|.-.+..++... +.+++|.+++...|..++..|+.. +.+ +..+ + ..--...|
T Consensus 42 kt~~~a~~~~~~-~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~~~~~i~~~R 120 (655)
T TIGR00631 42 KTFTMANVIAQV-NRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDASINDEIERLR 120 (655)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCCCChHHHHHH
Confidence 555555555543 368999999999999999998765 222 3333 1 11123457
Q ss_pred HHHHHHhhcCCCcEEEEecCCccCCCCCC----CcEEEEccCCCCcchhhhhh
Q 023157 192 DIIMREFRSGSSRVLITTDLLARGIDVQQ----VSLVINYDLPTQPENYLHRI 240 (286)
Q Consensus 192 ~~~~~~f~~~~~~vlv~T~~~~~Gidi~~----~~~vi~~~~~~s~~~~~Q~~ 240 (286)
..++..+.+++..|+|||-.+-.|+--|. ....+..|-..+..++..++
T Consensus 121 ~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~L 173 (655)
T TIGR00631 121 HSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRL 173 (655)
T ss_pred HHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHH
Confidence 78888887777778888855567765553 34445556555555554444
No 364
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.62 E-value=12 Score=34.03 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=25.5
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
...+++||||+|.+.... .+.+.+.+...+....+|+.|
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 345899999999875543 345556666555556566555
No 365
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=60.67 E-value=12 Score=28.33 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=21.8
Q ss_pred ccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeec
Q 023157 56 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 96 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 96 (286)
+++|+|||+|-+. .. -..+...+.......-+-++-.+.
T Consensus 77 ~dvI~IDEaQFf~-~~-i~~l~~~~~~~g~~Vi~~GL~~df 115 (176)
T PF00265_consen 77 YDVIGIDEAQFFD-EQ-IVQLVEILANKGIPVICAGLDTDF 115 (176)
T ss_dssp CSEEEESSGGGST-TT-HHHHHHHHHHTT-EEEEEEESB-T
T ss_pred CCEEEEechHhhH-HH-HHHHHHHHHhCCCeEEEEeeCCcc
Confidence 7899999999554 33 344555555544333344444443
No 366
>PRK07413 hypothetical protein; Validated
Probab=60.62 E-value=22 Score=30.48 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=35.6
Q ss_pred CCccEEEEehhhHhhccccH--HHHHHHHHhCCcCccEEEEEee-cChhHHHHH
Q 023157 54 DYIKMFVLDEADEMLSRGFK--DQIYDIFQLLPAKVQVGVFSAT-MPPEALEIT 104 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT-~~~~~~~~~ 104 (286)
..+++||+||+-...+.++. ..+..+++..|....+|+.--. +++.+.+..
T Consensus 304 g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~A 357 (382)
T PRK07413 304 GLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLA 357 (382)
T ss_pred CCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhC
Confidence 44689999999988877755 5777888888766655555444 555555543
No 367
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=60.55 E-value=72 Score=24.15 Aligned_cols=56 Identities=7% Similarity=0.193 Sum_probs=42.0
Q ss_pred cceEEEecchhhHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEE
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT 208 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 208 (286)
.++.++-.+...++.+++.|+.. +..+.-.||..++++...+.+..+....++++.
T Consensus 49 ~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~V 106 (177)
T TIGR00696 49 LPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFV 106 (177)
T ss_pred CeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEE
Confidence 46666667788888888888775 566555688888888788888888777765543
No 368
>COG1204 Superfamily II helicase [General function prediction only]
Probab=60.37 E-value=33 Score=32.67 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=50.0
Q ss_pred CcceEEEecchhhHHHHHHHHh---cCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec----CC-ccCC-CCCCCc
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMR---SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD----LL-ARGI-DVQQVS 222 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~----~~-~~Gi-di~~~~ 222 (286)
+.|++-.+|.+.-|++.++.++ ..|+.+...+|+...... .-++.+|+|+|. .+ .... -+.+++
T Consensus 76 ~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~-------~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~ 148 (766)
T COG1204 76 GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDE-------RLARYDVIVTTPEKLDSLTRKRPSWIEEVD 148 (766)
T ss_pred CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchh-------hhccCCEEEEchHHhhHhhhcCcchhhccc
Confidence 4689899999999999999988 679999999999864332 335789999994 21 1222 233677
Q ss_pred EEEE
Q 023157 223 LVIN 226 (286)
Q Consensus 223 ~vi~ 226 (286)
+||+
T Consensus 149 lvVi 152 (766)
T COG1204 149 LVVI 152 (766)
T ss_pred EEEE
Confidence 7774
No 369
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=60.06 E-value=24 Score=24.48 Aligned_cols=16 Identities=19% Similarity=0.476 Sum_probs=12.9
Q ss_pred ccEEEEehhhHhhccc
Q 023157 56 IKMFVLDEADEMLSRG 71 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~ 71 (286)
..++++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 3799999999877554
No 370
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=60.04 E-value=13 Score=34.22 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=26.1
Q ss_pred CCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 53 PDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 53 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
....+++||||+|.+.... .+.+.+.+..-+....+|+.|
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 3446899999999875443 345555566655566666655
No 371
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=60.02 E-value=71 Score=23.94 Aligned_cols=57 Identities=11% Similarity=0.269 Sum_probs=42.9
Q ss_pred CcceEEEecchhhHHHHHHHHhcC--CCeeE-EecCCCCHHHHHHHHHHhhcCCCcEEEE
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSR--DHTVS-ATHGDMDQNTRDIIMREFRSGSSRVLIT 208 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~--~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 208 (286)
+.++-++-.+...++.+++.|++. ++.+. ..++.++.++...+++..+....++++.
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~v 107 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFV 107 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 357777778888889999999876 55555 4455577888889999998877776654
No 372
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=59.98 E-value=13 Score=26.15 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=29.5
Q ss_pred cCcceEEEec-chhhHHHHHHHHhcCCCeeEEecCCCC
Q 023157 151 AITQSVIFVN-TRRKVDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
+..+++|||. +-..+...+..|+..|+.+..+.|++.
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 4568999996 456677788888888999888999874
No 373
>PRK02362 ski2-like helicase; Provisional
Probab=59.93 E-value=33 Score=32.62 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=49.1
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC---CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccC-CCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR---DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARG-IDVQQV 221 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-idi~~~ 221 (286)
++.++++.+|++.-|.+.++.++.. |..+..++|+.+.... ..+..+|+|||+ .+..+ ..+.++
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-------~l~~~~IiV~Tpek~~~llr~~~~~l~~v 138 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-------WLGDNDIIVATSEKVDSLLRNGAPWLDDI 138 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-------ccCCCCEEEECHHHHHHHHhcChhhhhhc
Confidence 4679999999999999999888765 7788889998754321 124578999995 22222 234567
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
+++|+
T Consensus 139 ~lvVi 143 (737)
T PRK02362 139 TCVVV 143 (737)
T ss_pred CEEEE
Confidence 88875
No 374
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=59.87 E-value=22 Score=31.34 Aligned_cols=70 Identities=11% Similarity=0.241 Sum_probs=50.5
Q ss_pred ceEEEecchhhHHHHHHHHhc-----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCc---cCCCCCC
Q 023157 154 QSVIFVNTRRKVDWLTDKMRS-----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLA---RGIDVQQ 220 (286)
Q Consensus 154 ~~ivf~~~~~~~~~l~~~l~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~---~Gidi~~ 220 (286)
-.+|.+||+.-|..+.+.+.. .+.++..+-|+.+.+ +-+..|++...+|+|+|+ ++. .++++..
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 578999999988877665433 356788888886544 456777788889999995 333 3566667
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
+.++|.
T Consensus 158 Le~LVL 163 (567)
T KOG0345|consen 158 LEILVL 163 (567)
T ss_pred cceEEe
Confidence 777775
No 375
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=59.41 E-value=37 Score=29.53 Aligned_cols=84 Identities=13% Similarity=0.109 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhc-cCcceEEEecchhhHHHHHHHHhcCCC----eeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec---
Q 023157 139 KLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDH----TVSATHGDMDQNTRDIIMREFRSGSSRVLITTD--- 210 (286)
Q Consensus 139 ~~~~l~~~~~~~-~~~~~ivf~~~~~~~~~l~~~l~~~~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~--- 210 (286)
.+..++.+.... .+-++++.++++.-|....+.+++.+- ....+.|+-+.+++-..+ .+..++++||+
T Consensus 76 ~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l----~~npDii~ATpgr~ 151 (529)
T KOG0337|consen 76 LIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILL----NENPDIIIATPGRL 151 (529)
T ss_pred HHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHh----ccCCCEEEecCcee
Confidence 445555555443 345999999999999988888877642 344344443333332222 34678999996
Q ss_pred ---CCccCCCCCCCcEEEE
Q 023157 211 ---LLARGIDVQQVSLVIN 226 (286)
Q Consensus 211 ---~~~~Gidi~~~~~vi~ 226 (286)
..++-+++..+..||+
T Consensus 152 ~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 152 LHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred eeeehheeccccceeeeee
Confidence 3455567778888885
No 376
>PTZ00424 helicase 45; Provisional
Probab=59.11 E-value=69 Score=27.60 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=46.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCC------ccCCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL------ARGIDVQQ 220 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~------~~Gidi~~ 220 (286)
.+.++++.++++.-+..+.+.+... +..+....|+....+. .+.+.. ..+|+|+|.-. ...+.+.+
T Consensus 95 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~-~~~Ivv~Tp~~l~~~l~~~~~~l~~ 170 (401)
T PTZ00424 95 NACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKA-GVHMVVGTPGRVYDMIDKRHLRVDD 170 (401)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcC-CCCEEEECcHHHHHHHHhCCccccc
Confidence 4568999999999888887776554 3455566677654432 233333 36899999621 22356777
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
++++|+
T Consensus 171 i~lvVi 176 (401)
T PTZ00424 171 LKLFIL 176 (401)
T ss_pred ccEEEE
Confidence 888775
No 377
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=58.95 E-value=51 Score=21.90 Aligned_cols=58 Identities=9% Similarity=0.212 Sum_probs=35.6
Q ss_pred EEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecChhH
Q 023157 35 VVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEA 100 (286)
Q Consensus 35 ii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 100 (286)
.+.+++.+...+.... ++++++| .+ +.+......+..+.... ..++++++|++.....
T Consensus 28 ~~~~~~~~~~~~~~~~-----~d~iiid-~~-~~~~~~~~~~~~i~~~~-~~~~ii~~t~~~~~~~ 85 (112)
T PF00072_consen 28 TASSGEEALELLKKHP-----PDLIIID-LE-LPDGDGLELLEQIRQIN-PSIPIIVVTDEDDSDE 85 (112)
T ss_dssp EESSHHHHHHHHHHST-----ESEEEEE-SS-SSSSBHHHHHHHHHHHT-TTSEEEEEESSTSHHH
T ss_pred EECCHHHHHHHhcccC-----ceEEEEE-ee-ecccccccccccccccc-ccccEEEecCCCCHHH
Confidence 3455566666666544 5899999 22 22333235555554444 7889999998876443
No 378
>PRK09087 hypothetical protein; Validated
Probab=58.93 E-value=49 Score=26.14 Aligned_cols=83 Identities=7% Similarity=0.039 Sum_probs=41.0
Q ss_pred eEEEEEcCcc--hHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCcc
Q 023157 11 KVHACVGGTS--VREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 88 (286)
Q Consensus 11 ~~~~~~g~~~--~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 88 (286)
+...++|... +......+.......+.++..+...+... ... +++++||+|.+. . ....+..+++.+...-+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~---~~~-~~l~iDDi~~~~-~-~~~~lf~l~n~~~~~g~ 118 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANA---AAE-GPVLIEDIDAGG-F-DETGLFHLINSVRQAGT 118 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHh---hhc-CeEEEECCCCCC-C-CHHHHHHHHHHHHhCCC
Confidence 4456666544 33333333333444455554332222111 011 589999999753 2 23456666655544444
Q ss_pred EEEEEeecChh
Q 023157 89 VGVFSATMPPE 99 (286)
Q Consensus 89 ~i~~SAT~~~~ 99 (286)
.+++|++.++.
T Consensus 119 ~ilits~~~p~ 129 (226)
T PRK09087 119 SLLMTSRLWPS 129 (226)
T ss_pred eEEEECCCChH
Confidence 56666654443
No 379
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=58.84 E-value=41 Score=20.83 Aligned_cols=59 Identities=17% Similarity=0.143 Sum_probs=36.9
Q ss_pred eEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccC
Q 023157 155 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARG 215 (286)
Q Consensus 155 ~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 215 (286)
.++.+.....+..+.+.... +..+....|.....+....+..+... ..|+++++.-..|
T Consensus 2 ~l~ivEg~~da~~~~~~~~~-~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGF-GGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCC-CEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 57788888888888776642 12344444444445555666665544 6799998865554
No 380
>COG1485 Predicted ATPase [General function prediction only]
Probab=58.28 E-value=9.2 Score=32.21 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=31.8
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHh-CCcCccEEEEEeecChhHHH
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQL-LPAKVQVGVFSATMPPEALE 102 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~~~ 102 (286)
+..++.|||+| +.+-+-.-.+.++++. +...+-+++.|.|+|+++..
T Consensus 130 ~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~ 177 (367)
T COG1485 130 ETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYK 177 (367)
T ss_pred cCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcc
Confidence 35899999999 4555444455555544 34577788889998866544
No 381
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.11 E-value=16 Score=33.28 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=27.2
Q ss_pred CCcEEEeCcHHHHHHHhc---CCCC---CCCcc-EEEEehhhHhhc
Q 023157 31 GVHVVVGTPGRVFDMLRR---QSLR---PDYIK-MFVLDEADEMLS 69 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~---~~~~---~~~~~-~iIiDE~h~~~~ 69 (286)
+..|.++|.+.|...+.+ +.+. +.+.. +.+-||+|++-.
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 688999999999887754 2232 33334 557899998754
No 382
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=57.96 E-value=13 Score=30.94 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=27.8
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
-+++||+||++.+.... .+.+.++...+..+.++...+-.
T Consensus 131 ~fKlvILDEADaMT~~A-QnALRRviek~t~n~rF~ii~n~ 170 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRDA-QNALRRVIEKYTANTRFATISNP 170 (360)
T ss_pred ceeEEEecchhHhhHHH-HHHHHHHHHHhccceEEEEeccC
Confidence 47899999999876443 35566677777767766644443
No 383
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=57.82 E-value=42 Score=27.00 Aligned_cols=54 Identities=7% Similarity=0.049 Sum_probs=44.7
Q ss_pred ccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCe
Q 023157 124 EGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT 178 (286)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~ 178 (286)
......+..++..-..+..+...+ ..+++.+.+|+++..+++...+.|++.|+.
T Consensus 112 ~~~DavfLDlp~Pw~~i~~~~~~L-~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 112 SDFDAVFLDLPDPWEAIPHAKRAL-KKPGGRICCFSPCIEQVQKTVEALREHGFT 165 (247)
T ss_dssp TSEEEEEEESSSGGGGHHHHHHHE--EEEEEEEEEESSHHHHHHHHHHHHHTTEE
T ss_pred CcccEEEEeCCCHHHHHHHHHHHH-hcCCceEEEECCCHHHHHHHHHHHHHCCCe
Confidence 346778888888887888888888 456789999999999999999999988753
No 384
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=57.71 E-value=40 Score=27.08 Aligned_cols=52 Identities=17% Similarity=0.271 Sum_probs=42.8
Q ss_pred ccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCC
Q 023157 124 EGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDH 177 (286)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~ 177 (286)
..+...+..+++.-..++.+...++. ++.+++|+++..++++..+.|++.|+
T Consensus 162 ~~vDav~LDmp~PW~~le~~~~~Lkp--gg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 162 EDVDAVFLDLPDPWNVLEHVSDALKP--GGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred cccCEEEEcCCChHHHHHHHHHHhCC--CcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 46777778888877777888777764 47999999999999999999998754
No 385
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=57.64 E-value=19 Score=23.95 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=29.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
+..++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 3568999999987888888899888884 777888764
No 386
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=57.60 E-value=21 Score=23.89 Aligned_cols=36 Identities=11% Similarity=0.124 Sum_probs=29.0
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
..+++++|.+-..+...+..|...|+. +..+.|++.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 468999998877888888899988885 677888764
No 387
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=57.47 E-value=16 Score=24.79 Aligned_cols=37 Identities=14% Similarity=0.040 Sum_probs=29.3
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe--eEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT--VSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~ 187 (286)
+..++++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 3468999998877777788899999984 777888874
No 388
>PRK11054 helD DNA helicase IV; Provisional
Probab=57.29 E-value=80 Score=29.76 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=39.5
Q ss_pred ceEEEecchhhHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHhh--cCCCcEEEEecCCccCCCCCCCcEEEEcc
Q 023157 154 QSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFR--SGSSRVLITTDLLARGIDVQQVSLVINYD 228 (286)
Q Consensus 154 ~~ivf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~--~~~~~vlv~T~~~~~Gidi~~~~~vi~~~ 228 (286)
+.+..+.+ ...+.+.+.+.. .+.++.++..- .......++... -...+|-+.|--.+.|+.. ++||+++
T Consensus 536 p~v~~~~~-~~~~~il~~l~~~~~~~~~I~IL~R~--~~~~~~~l~~~~~~~~~~~i~~~T~h~sKGLEf---D~ViI~g 609 (684)
T PRK11054 536 KAVTLLPE-DQLEALLDKLSGYAKPDERILLLARY--HHLRPALLDKAATRWPKLQIDFMTIHASKGQQA---DYVIILG 609 (684)
T ss_pred ceEEEeCC-HHHHHHHHHHHHhhcCCCcEEEEEec--hhhHHHHHHHHHhhcccCCeEEEehhhhcCCcC---CEEEEec
Confidence 44554544 356666666653 24455555432 112222333332 1234688999989999866 8888876
Q ss_pred C
Q 023157 229 L 229 (286)
Q Consensus 229 ~ 229 (286)
.
T Consensus 610 ~ 610 (684)
T PRK11054 610 L 610 (684)
T ss_pred C
Confidence 4
No 389
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=57.24 E-value=34 Score=28.83 Aligned_cols=62 Identities=10% Similarity=0.217 Sum_probs=35.4
Q ss_pred CCcEEEeCcH-------HHHHHHh---cCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe
Q 023157 31 GVHVVVGTPG-------RVFDMLR---RQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 31 ~~~iii~Tp~-------~l~~~~~---~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
.+|+.+..|+ .+.+... ..+ .....+++||||+|.+.... .+.+.+.+..-|+...+|+.|.
T Consensus 77 hpD~~~i~~~~~~i~id~ir~l~~~~~~~~-~~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 77 HPDVHLVAPDGQSIKKDQIRYLKEEFSKSG-VESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHhhCC-cccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 4578777663 3333332 122 23446899999999875443 4555566665555555555443
No 390
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=56.47 E-value=37 Score=28.39 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=25.4
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
...+++|||++|.+.... .+.+.+++..-| +..++++|.
T Consensus 123 ~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 123 APRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEEC
Confidence 446899999999874433 456666666655 554444444
No 391
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=56.01 E-value=17 Score=27.51 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=21.8
Q ss_pred ccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecC
Q 023157 56 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
.|++|||||=.+. .+.+..++.. ...+++|.|..
T Consensus 91 ~DlliVDEAAaIp----~p~L~~ll~~----~~~vv~stTi~ 124 (177)
T PF05127_consen 91 ADLLIVDEAAAIP----LPLLKQLLRR----FPRVVFSTTIH 124 (177)
T ss_dssp -SCEEECTGGGS-----HHHHHHHHCC----SSEEEEEEEBS
T ss_pred CCEEEEechhcCC----HHHHHHHHhh----CCEEEEEeecc
Confidence 4899999998652 3455555433 33677777765
No 392
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=55.88 E-value=15 Score=24.68 Aligned_cols=36 Identities=11% Similarity=0.096 Sum_probs=28.6
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDM 186 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 186 (286)
+..++++||.+-..+...+..|...|+. +..+.|++
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~ 101 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSW 101 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcH
Confidence 3568999999988888889999988874 66666665
No 393
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=55.27 E-value=17 Score=31.06 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=26.1
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeec
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 96 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 96 (286)
....++||||+|.+.... .+.+.+.+..-+....++++|..+
T Consensus 140 ~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 140 GGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred CCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECCc
Confidence 346799999999775443 455556666554455455555443
No 394
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=54.98 E-value=14 Score=24.54 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=28.1
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDM 186 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 186 (286)
+..+++|||.+-..+...+..|...|+. +..+.|++
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~ 96 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGF 96 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcH
Confidence 3468999998877788888999888875 66777765
No 395
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=54.86 E-value=88 Score=23.42 Aligned_cols=57 Identities=11% Similarity=0.268 Sum_probs=42.6
Q ss_pred CcceEEEecchhhHHHHHHHHhcC--CCeeEE-ecCCCCHHHHHHHHHHhhcCCCcEEEE
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSR--DHTVSA-THGDMDQNTRDIIMREFRSGSSRVLIT 208 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~--~~~~~~-~~~~~~~~~r~~~~~~f~~~~~~vlv~ 208 (286)
+.++.++-.+...++.+++.+++. ++.+.- .|+-+..++...+++..+....++++.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~v 105 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFV 105 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 457777778888888888888776 555554 677787777777888888877776654
No 396
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.42 E-value=15 Score=33.78 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=17.1
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
....+|||||+|.+.... .+.+.+.+..
T Consensus 118 g~~kVIIIDEad~Lt~~a-~naLLk~LEE 145 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREA-FNALLKTLEE 145 (624)
T ss_pred CCceEEEEEChHhCCHHH-HHHHHHHhhc
Confidence 345799999999875333 2334444443
No 397
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=54.14 E-value=32 Score=28.78 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=23.9
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
..++||+||+|.+.... ...+..++...+...++++.+
T Consensus 125 ~~~vlilDe~~~l~~~~-~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 125 DYKTILLDNAEALREDA-QQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCcEEEEeCcccCCHHH-HHHHHHHHHhccCCCeEEEEe
Confidence 34799999999764332 345556666655556555544
No 398
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=53.92 E-value=31 Score=28.56 Aligned_cols=38 Identities=18% Similarity=0.304 Sum_probs=23.7
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
..++|++||+|.+.... ...+..++...+....+++.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 35799999999774432 345555555555556555544
No 399
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=53.90 E-value=20 Score=25.16 Aligned_cols=29 Identities=14% Similarity=0.327 Sum_probs=16.9
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhC
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLL 83 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~ 83 (286)
....++|+||++.+.... ...+..++...
T Consensus 83 ~~~~~lilDe~~~~~~~~-~~~~~~~i~~~ 111 (151)
T cd00009 83 AKPGVLFIDEIDSLSRGA-QNALLRVLETL 111 (151)
T ss_pred CCCeEEEEeChhhhhHHH-HHHHHHHHHhc
Confidence 345799999999763322 33344444433
No 400
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=53.79 E-value=28 Score=22.09 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=29.8
Q ss_pred ccCcceEEEecchhhHHHHHHHHhcCCC-eeEEecCCCC
Q 023157 150 LAITQSVIFVNTRRKVDWLTDKMRSRDH-TVSATHGDMD 187 (286)
Q Consensus 150 ~~~~~~ivf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 187 (286)
.+..+++++|.+...+..++..|+..|+ .+..+.|++.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 3557899999998899999999998864 4666767653
No 401
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.62 E-value=1.2e+02 Score=26.37 Aligned_cols=88 Identities=6% Similarity=0.021 Sum_probs=48.3
Q ss_pred CceEEEEEcCcch---HHHHHHHhC--CCcEEE-eCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccc-cHHHHHHHHH
Q 023157 9 GVKVHACVGGTSV---REDQRILQA--GVHVVV-GTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQ 81 (286)
Q Consensus 9 ~~~~~~~~g~~~~---~~~~~~~~~--~~~iii-~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~i~~ 81 (286)
|.+|..++.+.-. .++...+.+ +..+.+ -+++.+...+.. ..+.++|+||++....... ....+..++.
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~ 281 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLN 281 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHH
Confidence 5677777776532 222333333 334333 344445444432 2457899999998654221 2245555555
Q ss_pred hCCcC-ccEEEEEeecChhH
Q 023157 82 LLPAK-VQVGVFSATMPPEA 100 (286)
Q Consensus 82 ~~~~~-~~~i~~SAT~~~~~ 100 (286)
....+ -..+.+|||...+.
T Consensus 282 ~~~~~~e~~LVlsat~~~~~ 301 (388)
T PRK12723 282 ACGRDAEFHLAVSSTTKTSD 301 (388)
T ss_pred hcCCCCeEEEEEcCCCCHHH
Confidence 54433 35788899987543
No 402
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=53.58 E-value=34 Score=27.73 Aligned_cols=128 Identities=11% Similarity=0.217 Sum_probs=69.5
Q ss_pred ccEEEEEeecChhH------HHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHh--hccCcceEEE
Q 023157 87 VQVGVFSATMPPEA------LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYE--TLAITQSVIF 158 (286)
Q Consensus 87 ~~~i~~SAT~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ivf 158 (286)
.++-.+|.|.+... ..+.+.+... .+.|..+.-+.....-..+.++.. ..+.-|+||+
T Consensus 3 ~kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~--------------~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv 68 (275)
T PF12683_consen 3 YKIGIVTGTVSQSEDEYRGAEELIKKYGDV--------------MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIVV 68 (275)
T ss_dssp EEEEEEE--TTT-HHHHHHHHHHHHHHHHH--------------EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEE
T ss_pred eEEEEEeCCcccChHHHHHHHHHHHHhCcc--------------eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEEE
Confidence 46778899987432 3334443221 345554444433334445555554 3355699999
Q ss_pred ecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCC------CCcEEEEccCCCC
Q 023157 159 VNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ------QVSLVINYDLPTQ 232 (286)
Q Consensus 159 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~------~~~~vi~~~~~~s 232 (286)
+....-.....+.+++....+..+.+.... +- .++. ...++.+.++...+|..++ .+...||+.+|..
T Consensus 69 ~q~vpGt~~af~kIkekRpDIl~ia~~~~E-Dp-~~i~----~~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfprh 142 (275)
T PF12683_consen 69 SQAVPGTAEAFRKIKEKRPDILLIAGEPHE-DP-EVIS----SAADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPRH 142 (275)
T ss_dssp E-SS---HHHHHHHHHH-TTSEEEESS--S--H-HHHH----HHSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEETTG
T ss_pred eCCCcchHHHHHHHHhcCCCeEEEcCCCcC-CH-HHHh----hccCeEeccchhhccHHHHHHHHHcCCceEEEEechhh
Confidence 999888888888888776677777765432 21 2222 2467888888888887776 5678889988876
Q ss_pred cc
Q 023157 233 PE 234 (286)
Q Consensus 233 ~~ 234 (286)
.+
T Consensus 143 ms 144 (275)
T PF12683_consen 143 MS 144 (275)
T ss_dssp GG
T ss_pred cc
Confidence 54
No 403
>PRK04841 transcriptional regulator MalT; Provisional
Probab=53.48 E-value=15 Score=35.55 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=32.9
Q ss_pred cEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecC
Q 023157 57 KMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
-+||+|++|.+.+......+..++...+.+.++++.|-+.+
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 48999999987666656788888888888888888887644
No 404
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=53.44 E-value=19 Score=32.38 Aligned_cols=28 Identities=14% Similarity=0.285 Sum_probs=17.3
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
...+++||||+|.+.... .+.+.+.+..
T Consensus 127 ~~~KVvIIDEa~~Ls~~a-~naLLk~LEe 154 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGA-FNALLKTLEE 154 (507)
T ss_pred CCcEEEEEEChhhcCHHH-HHHHHHHHhh
Confidence 446899999999875433 2333344443
No 405
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=52.79 E-value=11 Score=32.10 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=29.3
Q ss_pred ccEEEEehhhHhhccccHHHHHHHHHhC-CcCccEEEEEeecChhHH
Q 023157 56 IKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSATMPPEAL 101 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~ 101 (286)
..++.+||+|. .+-+-.-.+.++++.+ ....-+++.|.++|.++.
T Consensus 128 ~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly 173 (362)
T PF03969_consen 128 SRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDLY 173 (362)
T ss_pred CCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHc
Confidence 46999999994 4444445555555543 345667777888775543
No 406
>PRK14974 cell division protein FtsY; Provisional
Probab=52.72 E-value=28 Score=29.46 Aligned_cols=53 Identities=23% Similarity=0.306 Sum_probs=36.7
Q ss_pred CccEEEEehhhHhh-ccccHHHHHHHHHhCCcCccEEEEEeecChhHHHHHHHh
Q 023157 55 YIKMFVLDEADEML-SRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKF 107 (286)
Q Consensus 55 ~~~~iIiDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~ 107 (286)
..++|+||.+.... +......+..+.+...+...++.++|+...+.....+.+
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 35899999999765 234456667776666666668888998876655555544
No 407
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=52.53 E-value=68 Score=29.02 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=62.4
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhcc-ccHHHHH
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIY 77 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~ 77 (286)
.|....|+++..+|++...-++..++. +..||+|+- ++++ ..+++..+++|.|=+|+.-... +-...+.
T Consensus 464 ~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLLR-EGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 464 EYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhhh-ccCCCcceeEEEEeecCccccccccchHHH
Confidence 455678999999999999888777664 479999998 5554 5688888999988888853211 1123333
Q ss_pred HHH-HhCCcCccEEEEEeecChhHHH
Q 023157 78 DIF-QLLPAKVQVGVFSATMPPEALE 102 (286)
Q Consensus 78 ~i~-~~~~~~~~~i~~SAT~~~~~~~ 102 (286)
-+- .....+.++|+-.-..++.+..
T Consensus 538 tIGRAARN~~GkvIlYAD~iT~sM~~ 563 (663)
T COG0556 538 TIGRAARNVNGKVILYADKITDSMQK 563 (663)
T ss_pred HHHHHhhccCCeEEEEchhhhHHHHH
Confidence 332 1223356677776666655444
No 408
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=52.42 E-value=31 Score=28.65 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=26.9
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
...++||+||++.+... -.+.+.+.+..-+.+..+++.+.
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 45789999999987553 24566666666555665555554
No 409
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.89 E-value=23 Score=31.51 Aligned_cols=17 Identities=18% Similarity=0.431 Sum_probs=13.2
Q ss_pred CCccEEEEehhhHhhcc
Q 023157 54 DYIKMFVLDEADEMLSR 70 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~ 70 (286)
....++|+||+|.+...
T Consensus 116 ~~~kVvIIDE~h~Lt~~ 132 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKE 132 (472)
T ss_pred CCeEEEEEEChHHhHHH
Confidence 44579999999987543
No 410
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=51.77 E-value=15 Score=31.61 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=22.2
Q ss_pred cEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecCh
Q 023157 57 KMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPP 98 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 98 (286)
.++.+||+|++.... .. .++..+ .+-.++++.||-..
T Consensus 106 tiLflDEIHRfnK~Q-QD---~lLp~v-E~G~iilIGATTEN 142 (436)
T COG2256 106 TILFLDEIHRFNKAQ-QD---ALLPHV-ENGTIILIGATTEN 142 (436)
T ss_pred eEEEEehhhhcChhh-hh---hhhhhh-cCCeEEEEeccCCC
Confidence 589999999863322 22 233333 24558888888543
No 411
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=51.75 E-value=23 Score=28.50 Aligned_cols=87 Identities=14% Similarity=0.295 Sum_probs=52.9
Q ss_pred cceEEEecchhhHHHHHHHHhcC---CCeeEEecCC-CCHHHHHHHHHHhhcCCCcEEEEec-----CCccC-CCCCCCc
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSR---DHTVSATHGD-MDQNTRDIIMREFRSGSSRVLITTD-----LLARG-IDVQQVS 222 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~---~~~~~~~~~~-~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-idi~~~~ 222 (286)
..+||.|.+---|-.+.+.|+.. +..++.+-+. +.-+++...+ +.+..+|.|+|+ .++.| +.+..+.
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L---~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~ 203 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLL---KKTRVHIAVGTPGRLSKLLENGALSLSNLK 203 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHH---HhCCceEEEeChHHHHHHHHcCCCCcccCe
Confidence 35788888877777777777654 2344444443 4555555554 456788999996 33444 6777777
Q ss_pred EEEE------------ccCCCCcchhhhhhcc
Q 023157 223 LVIN------------YDLPTQPENYLHRIGR 242 (286)
Q Consensus 223 ~vi~------------~~~~~s~~~~~Q~~GR 242 (286)
.||+ +|.|.....+.+.+++
T Consensus 204 ~ivlD~s~~D~K~~~i~d~~e~~~~l~~lL~~ 235 (252)
T PF14617_consen 204 RIVLDWSYLDQKKRSIFDIPETREDLWKLLYK 235 (252)
T ss_pred EEEEcCCccccccccccccHHHHHHHHHHHhh
Confidence 7763 3344444555555444
No 412
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.34 E-value=86 Score=23.50 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=22.0
Q ss_pred cEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecChhHHHHHHH
Q 023157 57 KMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRK 106 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 106 (286)
|.+.+||.|. ..+..|...+.+..+-+++|.-=-..+..+.+.
T Consensus 111 DClFfdE~h~-------sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de 153 (201)
T KOG3201|consen 111 DCLFFDEHHE-------SLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDE 153 (201)
T ss_pred cchhHHHHHH-------HHHHHHHHHhCcccceeEecCcccchHHHHHHH
Confidence 4566777774 445555555555555444443333334444443
No 413
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=51.22 E-value=1.2e+02 Score=28.42 Aligned_cols=101 Identities=11% Similarity=0.166 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC-CCe-eEEe--------------------cCCC-----CHHHH
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR-DHT-VSAT--------------------HGDM-----DQNTR 191 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~-~~~-~~~~--------------------~~~~-----~~~~r 191 (286)
+.-.+..+++.. +.+++|.+++...|..+++.|+.. +.. +..+ +... -...|
T Consensus 45 ka~lia~l~~~~-~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~~~~~R 123 (652)
T PRK05298 45 KTFTMANVIARL-QRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIERLR 123 (652)
T ss_pred HHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChHHHHHH
Confidence 444444555443 368999999999999999988654 222 3333 1111 13457
Q ss_pred HHHHHHhhcCCCcEEEEecCCccCCCCCC----CcEEEEccCCCCcchhhhhh
Q 023157 192 DIIMREFRSGSSRVLITTDLLARGIDVQQ----VSLVINYDLPTQPENYLHRI 240 (286)
Q Consensus 192 ~~~~~~f~~~~~~vlv~T~~~~~Gidi~~----~~~vi~~~~~~s~~~~~Q~~ 240 (286)
..++..+..++..|+|+|-.+-.++--|+ ....+..|-..+..++..++
T Consensus 124 ~~~l~~L~~~~~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L 176 (652)
T PRK05298 124 HSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRL 176 (652)
T ss_pred HHHHHHHHhCCCEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHH
Confidence 88888888777667777753336655443 33445566666666655554
No 414
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=50.58 E-value=92 Score=22.37 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=39.5
Q ss_pred HHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCC
Q 023157 140 LETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID 217 (286)
Q Consensus 140 ~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid 217 (286)
...++.++.+. .+.+++|+|++...++.+-+.|=...-..-+=|+-.... ......|+|+++... -.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~ 83 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NP 83 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS-----
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CC
Confidence 46666666544 577999999999999999998844322222223221100 112357999987632 12
Q ss_pred CCCCcEEEEccCC
Q 023157 218 VQQVSLVINYDLP 230 (286)
Q Consensus 218 i~~~~~vi~~~~~ 230 (286)
.+..+++|+.+..
T Consensus 84 ~~~~~vLinL~~~ 96 (137)
T PF04364_consen 84 NNHADVLINLSGE 96 (137)
T ss_dssp -S--SEEEE--SS
T ss_pred CCCCCEEEECCCC
Confidence 2236778777653
No 415
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=50.55 E-value=33 Score=28.12 Aligned_cols=48 Identities=13% Similarity=0.262 Sum_probs=36.7
Q ss_pred cCceEEEEEcCcchHHHHHHHhC----CCcEEEeCcHHHHHHHhcCCCCCCCccEEEE
Q 023157 8 LGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 61 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~----~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIi 61 (286)
-+..|..+||+...+++.+.+.+ .+.|+|+|. .+...++.+.+++||=
T Consensus 289 ~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTD------VwaRGiDv~qVslviN 340 (400)
T KOG0328|consen 289 ANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTD------VWARGIDVQQVSLVIN 340 (400)
T ss_pred hCceeeeccCCcchhHHHHHHHHhhcCCceEEEEec------hhhccCCcceeEEEEe
Confidence 35688999999998888777653 789999993 4455677777887773
No 416
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=50.07 E-value=25 Score=33.46 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=36.5
Q ss_pred cEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecC
Q 023157 57 KMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
=++|+|+.|.+.+......+..++++.|.+...++.|=+-|
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 48999999999988888999999999999999888887744
No 417
>PRK13767 ATP-dependent helicase; Provisional
Probab=49.93 E-value=52 Score=32.04 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=47.3
Q ss_pred cceEEEecchhhHHHHHHHHh---------------cC-CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-C---
Q 023157 153 TQSVIFVNTRRKVDWLTDKMR---------------SR-DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-L--- 212 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~---------------~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~--- 212 (286)
.++++.+|++.-+...++.|. .. ++.+...||+.+..++.+.+. ...+|+|+|+- +
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~~p~IlVtTPE~L~~l 160 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----KPPHILITTPESLAIL 160 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----CCCCEEEecHHHHHHH
Confidence 468899999888876655332 11 567889999999888766554 35689999962 1
Q ss_pred -cc-CC--CCCCCcEEEE
Q 023157 213 -AR-GI--DVQQVSLVIN 226 (286)
Q Consensus 213 -~~-Gi--di~~~~~vi~ 226 (286)
.. .. .+.++++||+
T Consensus 161 l~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 161 LNSPKFREKLRTVKWVIV 178 (876)
T ss_pred hcChhHHHHHhcCCEEEE
Confidence 11 11 3457788875
No 418
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.90 E-value=21 Score=30.93 Aligned_cols=40 Identities=8% Similarity=0.149 Sum_probs=22.1
Q ss_pred CCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 53 PDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 53 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
.....++||||+|.+.... .+.+.+.+...++...+|+.+
T Consensus 125 ~~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred cCCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 3445899999999875443 233344444333333344433
No 419
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=49.64 E-value=41 Score=22.97 Aligned_cols=36 Identities=8% Similarity=0.019 Sum_probs=28.6
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDM 186 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 186 (286)
+..++++||.+-..+...+..|+..|+. +..+.|++
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 4568999999877888889999988874 66667765
No 420
>PTZ00293 thymidine kinase; Provisional
Probab=49.35 E-value=41 Score=26.31 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=11.6
Q ss_pred CCccEEEEehhhHh
Q 023157 54 DYIKMFVLDEADEM 67 (286)
Q Consensus 54 ~~~~~iIiDE~h~~ 67 (286)
.++++|.|||+|-+
T Consensus 76 ~~~dvI~IDEaQFf 89 (211)
T PTZ00293 76 KNYDVIAIDEGQFF 89 (211)
T ss_pred cCCCEEEEEchHhh
Confidence 45789999999965
No 421
>PHA00673 acetyltransferase domain containing protein
Probab=49.13 E-value=35 Score=25.15 Aligned_cols=49 Identities=6% Similarity=-0.051 Sum_probs=32.5
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHh--CCcCccEEEEEeecChhHHHHHH
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQL--LPAKVQVGVFSATMPPEALEITR 105 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~--~~~~~~~i~~SAT~~~~~~~~~~ 105 (286)
.++.|.+|+.|. ..+.+..+...... ....+..+.+||||+.++-++..
T Consensus 87 ~Ie~l~V~~~~R--GqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~fy~ 137 (154)
T PHA00673 87 TTESIFVAAAHR--PGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQLLP 137 (154)
T ss_pred EEEEEEEChhcc--CCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHHHH
Confidence 467888888886 44555444433222 22468999999999988766543
No 422
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=49.12 E-value=34 Score=23.24 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=28.1
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
..++++||.+-..+...+..|...|+......|++.
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~~ 95 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGLK 95 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCHH
Confidence 357999999988888889999888887655566643
No 423
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=48.93 E-value=17 Score=24.08 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=27.3
Q ss_pred cchhhHHHHHHHHhcCCCeeEE----ecCCCCHHHHHHHHHHhhcCCCcEEEEecC
Q 023157 160 NTRRKVDWLTDKMRSRDHTVSA----THGDMDQNTRDIIMREFRSGSSRVLITTDL 211 (286)
Q Consensus 160 ~~~~~~~~l~~~l~~~~~~~~~----~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 211 (286)
.|..++. .|+++|+.+.. ++.+....-+.++.+.+++|+++.+|.|..
T Consensus 18 AT~gTa~----~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 18 ATEGTAK----FLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp EEHHHHH----HHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred EChHHHH----HHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 4444554 45677777333 333323333447999999999998888864
No 424
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=48.58 E-value=32 Score=34.66 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=39.9
Q ss_pred ccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecChhHHHHHHHhc
Q 023157 56 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFM 108 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 108 (286)
..+.|+||++..++......+..++..+.+..|+|.+|-- +.+.......+
T Consensus 1089 aPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr--~~~m~~ad~l~ 1139 (1163)
T COG1196 1089 APFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHR--KGTMEAADRLV 1139 (1163)
T ss_pred CCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcC--hHHHHHHHHHe
Confidence 3689999999999888888899998888889999999754 34444444443
No 425
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=48.42 E-value=22 Score=32.31 Aligned_cols=36 Identities=28% Similarity=0.425 Sum_probs=24.4
Q ss_pred CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhcc
Q 023157 31 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR 70 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 70 (286)
+.+|+++|-......+. .-..+|++|||||-...+.
T Consensus 338 n~~VVfaTl~ga~~~~~----~~~~fD~vIIDEaaQamE~ 373 (649)
T KOG1803|consen 338 NSRVVFATLGGALDRLL----RKRTFDLVIIDEAAQAMEP 373 (649)
T ss_pred ccceEEEeccchhhhhh----cccCCCEEEEehhhhhccc
Confidence 68899999654444222 2245799999999865543
No 426
>PRK00254 ski2-like helicase; Provisional
Probab=48.10 E-value=45 Score=31.57 Aligned_cols=68 Identities=24% Similarity=0.306 Sum_probs=48.1
Q ss_pred CcceEEEecchhhHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccC-CCCCCCc
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARG-IDVQQVS 222 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-idi~~~~ 222 (286)
+.++++.+|++.-+.+.++.++. .|..+..++|+.+...+ ..++.+|+|+|+ .+..+ ..+.+++
T Consensus 68 ~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~-------~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~ 140 (720)
T PRK00254 68 GGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE-------WLGKYDIIIATAEKFDSLLRHGSSWIKDVK 140 (720)
T ss_pred CCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh-------hhccCCEEEEcHHHHHHHHhCCchhhhcCC
Confidence 56899999999999988877764 47889999998865432 125678999994 22222 3456777
Q ss_pred EEEE
Q 023157 223 LVIN 226 (286)
Q Consensus 223 ~vi~ 226 (286)
+||+
T Consensus 141 lvVi 144 (720)
T PRK00254 141 LVVA 144 (720)
T ss_pred EEEE
Confidence 7775
No 427
>PLN02955 8-amino-7-oxononanoate synthase
Probab=48.07 E-value=30 Score=30.78 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=19.6
Q ss_pred EEecchhhHHHHHHHHhcCCCeeEEec
Q 023157 157 IFVNTRRKVDWLTDKMRSRDHTVSATH 183 (286)
Q Consensus 157 vf~~~~~~~~~l~~~l~~~~~~~~~~~ 183 (286)
|++.+...+..+++.|.++|+-+..+.
T Consensus 398 I~ig~~~~a~~~~~~L~~~Gi~v~~i~ 424 (476)
T PLN02955 398 LVVGNQEKALKASRYLLKSGFHVMAIR 424 (476)
T ss_pred EEeCCHHHHHHHHHHHHHCCCEEEEEC
Confidence 566778888888888888876544333
No 428
>PHA00012 I assembly protein
Probab=47.73 E-value=63 Score=27.29 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=27.6
Q ss_pred CCccEEEEehhhHhhcc-ccH----HHHHH-HHHhCCcCccEEEEEeecC
Q 023157 54 DYIKMFVLDEADEMLSR-GFK----DQIYD-IFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~-~~~----~~~~~-i~~~~~~~~~~i~~SAT~~ 97 (286)
..-+++|+||||..... +++ ..+.. +........-++++|-.+.
T Consensus 80 p~gsLlVlDEaq~~fp~R~~~sk~p~~vie~l~~hRh~G~DvilITQ~ps 129 (361)
T PHA00012 80 SKNGLLVLDECGTWFNSRSWNDKERQPVIDWFLHARKLGWDIIFIIQDIS 129 (361)
T ss_pred CCCcEEEEECcccccCCCCcCcCCcHHHHHHHHHhccCCceEEEEcCCHH
Confidence 34479999999987642 222 32334 4444555677888887764
No 429
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=46.96 E-value=48 Score=22.86 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=28.6
Q ss_pred cCcceEEEecc-hhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 151 AITQSVIFVNT-RRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~-~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
+..++++||.+ ...+...+..|+..|+. +..+.|++.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 45688999988 47788888889888865 777777763
No 430
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=46.63 E-value=1.9e+02 Score=24.79 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=63.1
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-CCccCCCCCCCcEEEE-
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVIN- 226 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gidi~~~~~vi~- 226 (286)
.|+.+-|-+|..+.+-+++..|+.. +..+..+||+-++. ....++|||. -+-+-- ...+.+|+
T Consensus 143 ~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~-----------fr~plvVaTtHQLlrFk--~aFD~liID 209 (441)
T COG4098 143 QGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSY-----------FRAPLVVATTHQLLRFK--QAFDLLIID 209 (441)
T ss_pred cCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchh-----------ccccEEEEehHHHHHHH--hhccEEEEe
Confidence 5678999999999999999999875 57888999986533 2356788884 111111 12344443
Q ss_pred -cc-CCCCcchhhhhhcccccCCCcceEEEEeccCc
Q 023157 227 -YD-LPTQPENYLHRIGRSGRFGRKGVAINFVTRDD 260 (286)
Q Consensus 227 -~~-~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 260 (286)
+| +|.+-...+|-+-+-.|.. .|.-+.+.-...
T Consensus 210 EVDAFP~~~d~~L~~Av~~ark~-~g~~IylTATp~ 244 (441)
T COG4098 210 EVDAFPFSDDQSLQYAVKKARKK-EGATIYLTATPT 244 (441)
T ss_pred ccccccccCCHHHHHHHHHhhcc-cCceEEEecCCh
Confidence 22 5888888888888888863 344333333333
No 431
>PRK12377 putative replication protein; Provisional
Probab=46.54 E-value=48 Score=26.65 Aligned_cols=66 Identities=21% Similarity=0.189 Sum_probs=34.2
Q ss_pred CCCcEEEeCcHHHHHHHhcC---C-------CCCCCccEEEEehhhHhhcccc-HHHHHHHHHhCCc-CccEEEEEee
Q 023157 30 AGVHVVVGTPGRVFDMLRRQ---S-------LRPDYIKMFVLDEADEMLSRGF-KDQIYDIFQLLPA-KVQVGVFSAT 95 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~~---~-------~~~~~~~~iIiDE~h~~~~~~~-~~~~~~i~~~~~~-~~~~i~~SAT 95 (286)
.+..+++.|...+...+... . -.+..+++||+||+.......+ ...+..++...-. ...+++.|.-
T Consensus 128 ~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 128 KGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred cCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 35556666655555544321 1 1245689999999964332222 2444555544432 3445555543
No 432
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=46.38 E-value=39 Score=22.76 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=27.5
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDM 186 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 186 (286)
...+++++|.+-..+...+..|.+.|+.....-|++
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 92 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGI 92 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCH
Confidence 345788999998888888999999988654444664
No 433
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=46.37 E-value=20 Score=34.89 Aligned_cols=64 Identities=20% Similarity=0.232 Sum_probs=37.6
Q ss_pred CCcEEEeCcHHHHHHHh--cC--------C-CCCCCc----cEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 31 GVHVVVGTPGRVFDMLR--RQ--------S-LRPDYI----KMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~--~~--------~-~~~~~~----~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
...|+|+|.+++..-.. .. . .+++.+ -+||+||.|++...+ .....+.+.-| .-++-+|||
T Consensus 162 ~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~--k~~~~i~~lnp--l~~lrysAT 237 (986)
T PRK15483 162 TIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDN--KFYQAIEALKP--QMIIRFGAT 237 (986)
T ss_pred ceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcch--HHHHHHHhcCc--ccEEEEeee
Confidence 47899999998865321 00 0 111111 489999999985422 23344433322 225779999
Q ss_pred cCh
Q 023157 96 MPP 98 (286)
Q Consensus 96 ~~~ 98 (286)
.+.
T Consensus 238 ~~~ 240 (986)
T PRK15483 238 FPD 240 (986)
T ss_pred cCC
Confidence 975
No 434
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=46.23 E-value=26 Score=29.38 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=27.8
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeec
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 96 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 96 (286)
..+++|||++|.+.... .+.+.++++.-+.+..+|++|..+
T Consensus 113 ~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 113 IAQVVIVDPADAINRAA-CNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred CcEEEEeccHhhhCHHH-HHHHHHHhhCCCCCCeEEEEECCh
Confidence 46899999999875443 566666777666566566665543
No 435
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.08 E-value=27 Score=31.29 Aligned_cols=28 Identities=18% Similarity=0.445 Sum_probs=17.1
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
....++||||+|.+....+ +.+...+..
T Consensus 118 ~~~KVvIIDEad~Lt~~a~-naLLk~LEe 145 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAF-NALLKTLEE 145 (486)
T ss_pred CCeeEEEEEChhhcCHHHH-HHHHHHHhc
Confidence 3457999999997754332 333344443
No 436
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=45.86 E-value=1.3e+02 Score=29.26 Aligned_cols=67 Identities=12% Similarity=0.019 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHh----cCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR----SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 211 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 211 (286)
....+-.++....+..+.|.+++..-|..-++++. ..|+++..+.++++..+|.. .-..+|+.+|+.
T Consensus 110 L~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~------~Y~~dI~YgT~~ 180 (908)
T PRK13107 110 LTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKA------AYNADITYGTNN 180 (908)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHh------cCCCCeEEeCCC
Confidence 34444455566677889999999887777776664 45899999999998755422 225688888863
No 437
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=45.69 E-value=44 Score=24.03 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=12.5
Q ss_pred CCccEEEEehhhHhhc
Q 023157 54 DYIKMFVLDEADEMLS 69 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~ 69 (286)
...+++|+||.+.+..
T Consensus 84 ~~~~~lviDe~~~~~~ 99 (165)
T cd01120 84 GGDDLIILDELTRLVR 99 (165)
T ss_pred CCCEEEEEEcHHHHHH
Confidence 3457999999997653
No 438
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=45.36 E-value=1.1e+02 Score=29.09 Aligned_cols=61 Identities=20% Similarity=0.120 Sum_probs=41.1
Q ss_pred HHHhhccCcceEEEecchhhHHHHHHHH----hcCCCeeEEecCC-----CCHHHHHHHHHHhhcCCCcEEEEecC
Q 023157 145 DLYETLAITQSVIFVNTRRKVDWLTDKM----RSRDHTVSATHGD-----MDQNTRDIIMREFRSGSSRVLITTDL 211 (286)
Q Consensus 145 ~~~~~~~~~~~ivf~~~~~~~~~l~~~l----~~~~~~~~~~~~~-----~~~~~r~~~~~~f~~~~~~vlv~T~~ 211 (286)
.++....+..++|.++++.-|..-++.+ +..|.++..+.++ +.++++..+ ...+|+++|+.
T Consensus 104 a~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~------y~~dIvygTp~ 173 (762)
T TIGR03714 104 LYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKI------YNSDIVYTTNS 173 (762)
T ss_pred HHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHh------CCCCEEEECch
Confidence 3344456678999999998888777776 4458888776654 444444322 24789999964
No 439
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=44.68 E-value=66 Score=27.04 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=26.3
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeec
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 96 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 96 (286)
...+++|||++|.+.... .+.+.+.++.=|++..+|++|..+
T Consensus 107 ~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 107 NGYRLFVIEPADAMNESA-SNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred CCceEEEecchhhhCHHH-HHHHHHHhcCCCCCeEEEEEECCh
Confidence 446899999999875443 456666666644445445544443
No 440
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=44.51 E-value=29 Score=31.17 Aligned_cols=71 Identities=11% Similarity=0.094 Sum_probs=44.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-----eEEecCCCC-HHHHHHHHHHhhcCCCcEEEEecC-------CccCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-----VSATHGDMD-QNTRDIIMREFRSGSSRVLITTDL-------LARGID 217 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-----~~~~~~~~~-~~~r~~~~~~f~~~~~~vlv~T~~-------~~~Gid 217 (286)
.|.-.+|.+++++-|...++.+++.-.. .+.+-||.. ..++.+ -+.-++|||+|+. -...++
T Consensus 210 ~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKAR-----LRKGiNILIgTPGRLvDHLknT~~i~ 284 (708)
T KOG0348|consen 210 DGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKAR-----LRKGINILIGTPGRLVDHLKNTKSIK 284 (708)
T ss_pred CCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHH-----HhcCceEEEcCchHHHHHHhccchhe
Confidence 4457999999999999999887664222 223334432 222222 2346799999962 234466
Q ss_pred CCCCcEEEE
Q 023157 218 VQQVSLVIN 226 (286)
Q Consensus 218 i~~~~~vi~ 226 (286)
...++++|+
T Consensus 285 ~s~LRwlVl 293 (708)
T KOG0348|consen 285 FSRLRWLVL 293 (708)
T ss_pred eeeeeEEEe
Confidence 667788875
No 441
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=44.50 E-value=24 Score=32.21 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=13.5
Q ss_pred CCccEEEEehhhHhhccc
Q 023157 54 DYIKMFVLDEADEMLSRG 71 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~ 71 (286)
....++||||+|.+....
T Consensus 118 ~~~kViIIDE~~~Lt~~a 135 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGA 135 (559)
T ss_pred CCeEEEEEECcccCCHHH
Confidence 346899999999875443
No 442
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=44.45 E-value=1.8e+02 Score=25.51 Aligned_cols=72 Identities=10% Similarity=0.139 Sum_probs=46.0
Q ss_pred cCcceEEEecchhhHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC------CccCCCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL------LARGIDVQQV 221 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gidi~~~ 221 (286)
.+..++|++++++-|..+--+.+. .|.....++|+-+..++.+.++ +...+++||+- ...-+|+..+
T Consensus 293 ~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lk----rgveiiiatPgrlndL~~~n~i~l~si 368 (629)
T KOG0336|consen 293 NGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLK----RGVEIIIATPGRLNDLQMDNVINLASI 368 (629)
T ss_pred CCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHh----cCceEEeeCCchHhhhhhcCeeeeeee
Confidence 455799999999888776555443 3666666666666555544433 36678888852 2333666666
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
+.+++
T Consensus 369 TYlVl 373 (629)
T KOG0336|consen 369 TYLVL 373 (629)
T ss_pred EEEEe
Confidence 66664
No 443
>PRK05320 rhodanese superfamily protein; Provisional
Probab=44.33 E-value=41 Score=27.23 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=32.1
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
++.++++||.+-..++..+..|++.|+. +..+.|++.
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~ 211 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGIL 211 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHH
Confidence 5678999999999999999999999984 778889874
No 444
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=44.16 E-value=83 Score=28.63 Aligned_cols=163 Identities=13% Similarity=0.097 Sum_probs=85.3
Q ss_pred cccccCceEEEEEcCcchHHHH---HHHh---CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccc----cH
Q 023157 4 LGDYLGVKVHACVGGTSVREDQ---RILQ---AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG----FK 73 (286)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~---~~~~---~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~----~~ 73 (286)
+.+..+.+++.++|+.+.+-.. .... +.++|+|+|... ...+.+ +++-||+=-...+.... -.
T Consensus 376 IE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAI------GMGLNL-~IrRiiF~sl~Kysg~e~~~it~ 448 (700)
T KOG0953|consen 376 IEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAI------GMGLNL-NIRRIIFYSLIKYSGRETEDITV 448 (700)
T ss_pred HHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccc------cccccc-ceeEEEEeecccCCcccceeccH
Confidence 4455567799999999865433 3332 379999999532 122333 25677776665443322 22
Q ss_pred HHHHHHHHhCC--cCccEEEEEeecChhHHHHHHHhcCCCe-EEEecCCccccccceeEEEEccchhhHHHHHHHHHhhc
Q 023157 74 DQIYDIFQLLP--AKVQVGVFSATMPPEALEITRKFMNKPV-RILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL 150 (286)
Q Consensus 74 ~~~~~i~~~~~--~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 150 (286)
.++..|.-... ....-.+...|+..+.....+..+..|. .+....--.....+..+...+++.. ....+..+.+..
T Consensus 449 sqikQIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~~l~~p~epi~~agl~pt~eqie~fa~~~Pd~t-~snLld~f~~~~ 527 (700)
T KOG0953|consen 449 SQIKQIAGRAGRFGSKYPQGEVTTLHSEDLKLLKRILKRPVEPIKNAGLWPTDEQIELFAYHLPDAT-PSNLLDIFVKLC 527 (700)
T ss_pred HHHHHHhhcccccccCCcCceEEEeeHhhHHHHHHHHhCCchHHHhccCCccHHHHHHHHHhCCCcc-HHHHHHHHHHHH
Confidence 44555543221 1223456666777666666666665443 1111111122233344444444332 222333333333
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR 175 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~ 175 (286)
. .....|+.+.+....+++++.+-
T Consensus 528 ~-~~~~fflc~~~~~k~va~liehi 551 (700)
T KOG0953|consen 528 E-VDGLFFLCNLDDFKFVAELIEHI 551 (700)
T ss_pred c-cCCceEEecchhHHHHHHHHHhC
Confidence 3 23377778888888888888653
No 445
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=44.06 E-value=28 Score=27.42 Aligned_cols=39 Identities=15% Similarity=0.433 Sum_probs=27.5
Q ss_pred cEEEEehhhHhhccccHHHHHHHHHhCCc-CccEEEEEee
Q 023157 57 KMFVLDEADEMLSRGFKDQIYDIFQLLPA-KVQVGVFSAT 95 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT 95 (286)
.++++||....+...+...+..++....+ +.|+++.|=.
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHS 298 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHS 298 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCcc
Confidence 68999998877776666666677766554 6788776543
No 446
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=44.02 E-value=67 Score=28.26 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=43.8
Q ss_pred CcceEEEecchhhHHHHHHHHhcC------CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSR------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARGID 217 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~Gid 217 (286)
+...+|.+||+.-|..+++.+.+. .+.+.-+.+.++..... .+-.+...|+|+|+ .++.|+.
T Consensus 93 ~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d~pdIvV~TP~~ll~~~~~~~~ 165 (569)
T KOG0346|consen 93 GPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMDLPDIVVATPAKLLRHLAAGVL 165 (569)
T ss_pred cceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHccCCCeEEeChHHHHHHHhhccc
Confidence 347899999999999999877653 34555566666654433 44557889999996 4566664
No 447
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=43.99 E-value=33 Score=23.68 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=14.0
Q ss_pred ccEEEEehhhHhhccccH
Q 023157 56 IKMFVLDEADEMLSRGFK 73 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~~~ 73 (286)
.+++++||++.+......
T Consensus 79 ~~viiiDei~~~~~~~~~ 96 (148)
T smart00382 79 PDVLILDEITSLLDAEQE 96 (148)
T ss_pred CCEEEEECCcccCCHHHH
Confidence 489999999987665433
No 448
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.49 E-value=28 Score=32.26 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=24.4
Q ss_pred CCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 53 PDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 53 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
....+++||||+|.+.... .+.+.+.+...+....+|+.|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 3456899999999875433 345555555554444444433
No 449
>PRK06921 hypothetical protein; Provisional
Probab=43.47 E-value=25 Score=28.64 Aligned_cols=90 Identities=13% Similarity=0.180 Sum_probs=44.6
Q ss_pred ceEEEEEcCcchHHHH-------HHHhC-CCcEEEeCcHHHHHHHhcC-------CCCCCCccEEEEehhhH-hhc-c--
Q 023157 10 VKVHACVGGTSVREDQ-------RILQA-GVHVVVGTPGRVFDMLRRQ-------SLRPDYIKMFVLDEADE-MLS-R-- 70 (286)
Q Consensus 10 ~~~~~~~g~~~~~~~~-------~~~~~-~~~iii~Tp~~l~~~~~~~-------~~~~~~~~~iIiDE~h~-~~~-~-- 70 (286)
.....++|.....+-- ..... +..+++.|...+...+... .-.+.+.++|||||+|. +.. .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~~~~g~e~~ 196 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFKPVNGKPRA 196 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCCCccC
Confidence 3556777766543321 22223 5677777765554433221 01234579999999974 111 0
Q ss_pred -cc-HHHHHHHHHhCCcCccEEEEEeecChh
Q 023157 71 -GF-KDQIYDIFQLLPAKVQVGVFSATMPPE 99 (286)
Q Consensus 71 -~~-~~~~~~i~~~~~~~~~~i~~SAT~~~~ 99 (286)
.+ ...+..+++......+-+++|+..++.
T Consensus 197 t~~~~~~lf~iin~R~~~~k~tIitsn~~~~ 227 (266)
T PRK06921 197 TEWQIEQMYSVLNYRYLNHKPILISSELTID 227 (266)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEECCCCHH
Confidence 11 234555555543222234556665544
No 450
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=43.44 E-value=42 Score=24.34 Aligned_cols=37 Identities=11% Similarity=0.095 Sum_probs=30.6
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCC-eeEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDH-TVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 187 (286)
...+++|+|.+...+...+..|+..|+ ++..+.|++.
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 346899999998888888889988877 6888999864
No 451
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=42.94 E-value=1.3e+02 Score=21.80 Aligned_cols=76 Identities=12% Similarity=0.011 Sum_probs=49.8
Q ss_pred hccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCC---CCCcEEE
Q 023157 149 TLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV---QQVSLVI 225 (286)
Q Consensus 149 ~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi---~~~~~vi 225 (286)
...+.++.|+-.+....+.++..|.++|..+...|.....-+ . .-.+.+|+|+.-....-++- ..-.+|+
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~------~-~v~~ADIVvsAtg~~~~i~~~~ikpGa~Vi 97 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ------S-KVHDADVVVVGSPKPEKVPTEWIKPGATVI 97 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH------H-HHhhCCEEEEecCCCCccCHHHcCCCCEEE
Confidence 346778999999999999999999999999999997654211 1 12355666665433322332 2234666
Q ss_pred EccCCC
Q 023157 226 NYDLPT 231 (286)
Q Consensus 226 ~~~~~~ 231 (286)
.++...
T Consensus 98 dvg~~~ 103 (140)
T cd05212 98 NCSPTK 103 (140)
T ss_pred EcCCCc
Confidence 666554
No 452
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=42.87 E-value=52 Score=25.53 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=38.8
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhc---CCCCCCCccEEEEehhh
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR---QSLRPDYIKMFVLDEAD 65 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~---~~~~~~~~~~iIiDE~h 65 (286)
+|.+.+|.+|..-.|-.....++. +++.||++++.++....+.. +.+...++.-+-+-|+-
T Consensus 41 ~~~ektg~kVnvt~GPq~tW~~kA--kknADilfgaseqsalaia~~~~~~fs~~~i~ply~R~ai 104 (252)
T COG4588 41 KYEEKTGIKVNVTAGPQATWNEKA--KKNADILFGASEQSALAIAEDHKDSFSEKNIQPLYLRPAI 104 (252)
T ss_pred HHHHHhCeEEEEecCCcchhhhhh--hccCceeecccHHHHHHHHHhccccccccccceeeeeceE
Confidence 567788999998888766554433 35789999999877655433 22334444444444444
No 453
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=42.61 E-value=90 Score=30.50 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=41.3
Q ss_pred cceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 210 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 210 (286)
.-.+|.++++..+..+.+.++. .++.+..++|+....++ +...++| ..|+|||+
T Consensus 439 Pi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~q---iaelkRg-~eIvV~tp 496 (997)
T KOG0334|consen 439 PIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQ---IAELKRG-AEIVVCTP 496 (997)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHH---HHHHhcC-CceEEecc
Confidence 3478888999999999887755 47888888888775544 4555667 78999995
No 454
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=42.20 E-value=41 Score=28.99 Aligned_cols=12 Identities=17% Similarity=0.432 Sum_probs=10.5
Q ss_pred cEEEEehhhHhh
Q 023157 57 KMFVLDEADEML 68 (286)
Q Consensus 57 ~~iIiDE~h~~~ 68 (286)
-+||+||+|.+.
T Consensus 140 ~viviDE~d~l~ 151 (394)
T PRK00411 140 LIVALDDINYLF 151 (394)
T ss_pred EEEEECCHhHhh
Confidence 489999999887
No 455
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=42.15 E-value=27 Score=28.20 Aligned_cols=13 Identities=23% Similarity=0.383 Sum_probs=11.1
Q ss_pred cEEEEehhhHhhc
Q 023157 57 KMFVLDEADEMLS 69 (286)
Q Consensus 57 ~~iIiDE~h~~~~ 69 (286)
+++++||+|.+..
T Consensus 107 ~VL~IDE~~~L~~ 119 (261)
T TIGR02881 107 GVLFIDEAYSLAR 119 (261)
T ss_pred CEEEEechhhhcc
Confidence 6999999998763
No 456
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=42.09 E-value=37 Score=31.74 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=25.6
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecC
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
..++++|+|||+.+.... ...+..++.. ...+++++|.+-.
T Consensus 293 ~~~DLLIVDEAAfI~~~~-l~aIlP~l~~--~~~k~IiISS~~~ 333 (752)
T PHA03333 293 QNPDLVIVDEAAFVNPGA-LLSVLPLMAV--KGTKQIHISSPVD 333 (752)
T ss_pred CCCCEEEEECcccCCHHH-HHHHHHHHcc--CCCceEEEeCCCC
Confidence 456899999999765433 2223333333 3566777777754
No 457
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=41.88 E-value=81 Score=31.12 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=24.3
Q ss_pred CCCccEEEEehhhHhhccccHHHHHHHHHhC-CcCccEEEEEee
Q 023157 53 PDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSAT 95 (286)
Q Consensus 53 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT 95 (286)
+...++|||||+-++.... +..+++.. +..+++|++.-+
T Consensus 431 l~~~~vlIVDEASMv~~~~----m~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 431 LTSRDVLVIDEAGMVGTRQ----LERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred cccCcEEEEECcccCCHHH----HHHHHHhhhhCCCEEEEECCH
Confidence 4456899999999765443 33444432 345677776555
No 458
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=41.80 E-value=34 Score=28.87 Aligned_cols=40 Identities=10% Similarity=0.132 Sum_probs=24.5
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
...+++||||+|.+.... .+.+.+.+..-|.+..++++|.
T Consensus 105 ~~~kv~iI~~a~~m~~~a-aNaLLK~LEEPp~~~~fiL~t~ 144 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNA-ANALLKSLEEPSGDTVLLLISH 144 (328)
T ss_pred CCCeEEEECChhhCCHHH-HHHHHHHHhCCCCCeEEEEEEC
Confidence 346899999999875443 4555556665444444443333
No 459
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.73 E-value=31 Score=31.94 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=20.7
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGV 91 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~ 91 (286)
...+++||||+|.+.... .+.+.+.+..-+....+|+
T Consensus 120 ~~~KViIIDEad~Lt~~a-~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAA-FNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred CCceEEEEECccccCHHH-HHHHHHHHhcCCcCeEEEE
Confidence 345899999999875433 2344444444333333333
No 460
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=41.66 E-value=1.5e+02 Score=28.25 Aligned_cols=60 Identities=8% Similarity=0.007 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHhhccCcceEEEecchhhHH----HHHHHHhcCCCeeEEecCCCCHHHHHHHHH
Q 023157 137 EWKLETLCDLYETLAITQSVIFVNTRRKVD----WLTDKMRSRDHTVSATHGDMDQNTRDIIMR 196 (286)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 196 (286)
+.....+...+....+..+-|.+++..-|. .+...+...|+++..+.++++..+|..++.
T Consensus 104 KTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY~ 167 (764)
T PRK12326 104 KTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYA 167 (764)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHc
Confidence 345566666777778889999999955554 444455566999999999999998887764
No 461
>PLN02160 thiosulfate sulfurtransferase
Probab=41.66 E-value=38 Score=24.23 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=30.0
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
++.++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~~ 117 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYL 117 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcHH
Confidence 4568999999988888899999988874 666777753
No 462
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=41.53 E-value=39 Score=29.92 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=23.0
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
...++|||||+|.+.... .+.+.+.+..-+....+|+.|
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 345799999999875433 344445555444444444443
No 463
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=41.52 E-value=44 Score=23.04 Aligned_cols=37 Identities=5% Similarity=0.019 Sum_probs=29.1
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
+..+++++|.+-..+...+..|...|+. +..+.+++.
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 4568999999888888899999988875 555777654
No 464
>PF12846 AAA_10: AAA-like domain
Probab=40.89 E-value=27 Score=28.52 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=22.7
Q ss_pred CccEEEEehhhHhhccc-cHHHHHHHHHhC-CcCccEEEEEeec
Q 023157 55 YIKMFVLDEADEMLSRG-FKDQIYDIFQLL-PAKVQVGVFSATM 96 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~ 96 (286)
.-.++++||+|.+.... ....+..+++.. .....+++.|-++
T Consensus 220 ~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk~g~~~~l~tQ~~ 263 (304)
T PF12846_consen 220 RPKIIVIDEAHNFLSNPSGAEFLDELLREGRKYGVGLILATQSP 263 (304)
T ss_pred ceEEEEeCCccccccccchhhhhhHHHHHHHhcCCEEEEeeCCH
Confidence 34689999999987652 233444444332 2233344444443
No 465
>PRK04195 replication factor C large subunit; Provisional
Probab=40.85 E-value=25 Score=31.41 Aligned_cols=60 Identities=18% Similarity=0.115 Sum_probs=30.7
Q ss_pred ceEEEEEcCcchHH--HHHHHhC--CCcEEEeCc------HHHHHHHhc---CCCCC-CCccEEEEehhhHhhc
Q 023157 10 VKVHACVGGTSVRE--DQRILQA--GVHVVVGTP------GRVFDMLRR---QSLRP-DYIKMFVLDEADEMLS 69 (286)
Q Consensus 10 ~~~~~~~g~~~~~~--~~~~~~~--~~~iii~Tp------~~l~~~~~~---~~~~~-~~~~~iIiDE~h~~~~ 69 (286)
.+...++|..+... ....+.+ +.+++..++ +.+...... ....+ ....+||+||+|.+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHG 112 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCccccc
Confidence 46677788555332 2222322 445655544 222222221 11112 2457999999998764
No 466
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=40.73 E-value=34 Score=27.62 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=36.2
Q ss_pred ccccccCceEEEEEcCcchHHHH----HHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEeh
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQ----RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDE 63 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE 63 (286)
+..+.+|+++...-......... ....+++++||++...+.+.+.+-.-...+..++++|-
T Consensus 25 ~~~~~~gv~~~~~e~~~~~~~~~~~i~~~~~~g~dlIi~~g~~~~~~~~~vA~~~p~~~F~~~d~ 89 (258)
T cd06353 25 AAEKALGVEVTYVENVPEGADAERVLRELAAQGYDLIFGTSFGFMDAALKVAKEYPDVKFEHCSG 89 (258)
T ss_pred HHHHhcCCeEEEEecCCchHhHHHHHHHHHHcCCCEEEECchhhhHHHHHHHHHCCCCEEEECCC
Confidence 44555777776666553322222 23345899999999888776554222234567787773
No 467
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=39.83 E-value=55 Score=25.34 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=21.9
Q ss_pred cEEEEehhhHhh-c----cccHHHHHHHHHhCCcC-ccEEEEEeec
Q 023157 57 KMFVLDEADEML-S----RGFKDQIYDIFQLLPAK-VQVGVFSATM 96 (286)
Q Consensus 57 ~~iIiDE~h~~~-~----~~~~~~~~~i~~~~~~~-~~~i~~SAT~ 96 (286)
-+||+||+|.+. . ..+...+..++...... ...+.++++.
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 589999999887 2 23334555555552222 2344456654
No 468
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=39.80 E-value=72 Score=30.27 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=23.2
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecChh
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPE 99 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 99 (286)
...++++||+|.+.... .. .++..+. +.+++++++|..+.
T Consensus 109 ~~~IL~IDEIh~Ln~~q-Qd---aLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ-QD---ALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHHH-HH---HHHHHhc-CceEEEEEecCCCh
Confidence 34689999999864332 12 2233332 35577777775433
No 469
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=39.77 E-value=72 Score=31.23 Aligned_cols=122 Identities=15% Similarity=0.142 Sum_probs=80.2
Q ss_pred ceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcC--CCcEEEEec---CCccC-----CCCCC---
Q 023157 154 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG--SSRVLITTD---LLARG-----IDVQQ--- 220 (286)
Q Consensus 154 ~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~T~---~~~~G-----idi~~--- 220 (286)
-++|..|-+.-.+.-...|...++.+..++++++..+|..+++.+..| .++++-.|+ +...| .++..
T Consensus 306 itvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~ 385 (941)
T KOG0351|consen 306 VTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGL 385 (941)
T ss_pred ceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCe
Confidence 377888888888877888888899999999999999999999999999 788887775 12222 23333
Q ss_pred CcEEEEccC-------CCCcchhhhhhcccccCCCcc-eEEEEeccCcHHHHHHHHHHhchhccc
Q 023157 221 VSLVINYDL-------PTQPENYLHRIGRSGRFGRKG-VAINFVTRDDERMLFDIQKFYNVVIEE 277 (286)
Q Consensus 221 ~~~vi~~~~-------~~s~~~~~Q~~GR~~R~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (286)
+..++ +|- -.+.+.-+.++|=.-+. .++ ..+-++..........+...++.....
T Consensus 386 lal~v-IDEAHCVSqWgHdFRp~Yk~l~~l~~~-~~~vP~iALTATAT~~v~~DIi~~L~l~~~~ 448 (941)
T KOG0351|consen 386 LALFV-IDEAHCVSQWGHDFRPSYKRLGLLRIR-FPGVPFIALTATATERVREDVIRSLGLRNPE 448 (941)
T ss_pred eEEEE-ecHHHHhhhhcccccHHHHHHHHHHhh-CCCCCeEEeehhccHHHHHHHHHHhCCCCcc
Confidence 12222 110 11233334455444332 334 466666677777888888877765443
No 470
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=39.46 E-value=37 Score=28.55 Aligned_cols=40 Identities=5% Similarity=0.037 Sum_probs=24.6
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
...+++|||++|.+.... .+.+.+.+..=|.+..++++|.
T Consensus 106 g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAA-ANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred CCceEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEEC
Confidence 346899999999875443 4555666655444443444443
No 471
>PRK13342 recombination factor protein RarA; Reviewed
Probab=39.30 E-value=76 Score=27.74 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=20.6
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeec
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 96 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 96 (286)
.-.+|++||+|.+.... .. .++..+. ...++++.+|.
T Consensus 92 ~~~vL~IDEi~~l~~~~-q~---~LL~~le-~~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNKAQ-QD---ALLPHVE-DGTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCHHH-HH---HHHHHhh-cCcEEEEEeCC
Confidence 34699999999864332 22 2333332 23456665653
No 472
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=39.29 E-value=45 Score=21.72 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=26.6
Q ss_pred HHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC
Q 023157 170 DKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 211 (286)
Q Consensus 170 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 211 (286)
+.|++.|+.+...+..... .+..+++.+++|+++.+|.|..
T Consensus 24 ~~L~~~Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 24 KFLREAGLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHCCCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECCC
Confidence 4456678776433433321 1235888999999999988864
No 473
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.99 E-value=42 Score=30.91 Aligned_cols=33 Identities=12% Similarity=0.310 Sum_probs=19.4
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCc
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV 87 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~ 87 (286)
...++|||||+|.+.... .+.+.+.+..-+...
T Consensus 119 ~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~t 151 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHA 151 (585)
T ss_pred CCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCe
Confidence 446899999999875433 233444444433333
No 474
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=38.97 E-value=74 Score=19.80 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=23.1
Q ss_pred ceEEEecchhhHHHHHHHHhcCCCeeEEe
Q 023157 154 QSVIFVNTRRKVDWLTDKMRSRDHTVSAT 182 (286)
Q Consensus 154 ~~ivf~~~~~~~~~l~~~l~~~~~~~~~~ 182 (286)
..+|.++|..+|..+.+.|++.|+.+.++
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 56788888899999999999887654433
No 475
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=38.83 E-value=36 Score=32.04 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=21.7
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
...+++||||+|.+.... ...+.+.+..-|....+|++|
T Consensus 117 g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred CCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEEc
Confidence 445899999999875432 333444444433334334333
No 476
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=38.78 E-value=58 Score=21.91 Aligned_cols=37 Identities=8% Similarity=0.083 Sum_probs=29.1
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
...+++++|.+-..+...+..|+..|+. +..+.|++.
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGFE 94 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCHH
Confidence 3457888998888888888899998885 667777763
No 477
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=38.50 E-value=83 Score=30.80 Aligned_cols=15 Identities=20% Similarity=0.731 Sum_probs=12.4
Q ss_pred ccEEEEehhhHhhcc
Q 023157 56 IKMFVLDEADEMLSR 70 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~ 70 (286)
..+||+||+|.+...
T Consensus 870 v~IIILDEID~L~kK 884 (1164)
T PTZ00112 870 VSILIIDEIDYLITK 884 (1164)
T ss_pred ceEEEeehHhhhCcc
Confidence 568999999988754
No 478
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=38.47 E-value=41 Score=28.55 Aligned_cols=41 Identities=15% Similarity=0.147 Sum_probs=24.9
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
...+++|||++|.+.... .+.+.+.+..=|++..+|++|..
T Consensus 131 ~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 131 GGARVVVLYPAEALNVAA-ANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhcCCCcCcEEEEEECC
Confidence 346899999999875443 45555666654444444444443
No 479
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=38.33 E-value=1.4e+02 Score=21.64 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=48.3
Q ss_pred hhHHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCcc
Q 023157 137 EWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLAR 214 (286)
Q Consensus 137 ~~~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~ 214 (286)
..+...++.++.+. .+.+++|.|++...++.+=+.|=...-..-+=|+-.... ......|+|+...
T Consensus 12 ~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~l~~~~--- 79 (142)
T PRK05728 12 SALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG---------PAAGQPVLLTWPG--- 79 (142)
T ss_pred hhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC---------CCCCCCEEEEcCC---
Confidence 33777788877654 578999999999999999888843322223333321110 1234578887211
Q ss_pred CCCCCCCcEEEEccC
Q 023157 215 GIDVQQVSLVINYDL 229 (286)
Q Consensus 215 Gidi~~~~~vi~~~~ 229 (286)
.-+.+..+.+|.++.
T Consensus 80 ~~~~~~~~~LinL~~ 94 (142)
T PRK05728 80 KRNANHRDLLINLDG 94 (142)
T ss_pred CCCCCCCcEEEECCC
Confidence 123345566666654
No 480
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=37.75 E-value=57 Score=30.97 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=24.9
Q ss_pred ccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe-ecChhHHH
Q 023157 56 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA-TMPPEALE 102 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA-T~~~~~~~ 102 (286)
.|+||+||-|.+.+.. ..+.-.+....... .|.+|+ .+..++.+
T Consensus 435 PDlVICDEGHrIKN~~--A~iS~aLk~IrtrR-RiVLTGYPLQNNLlE 479 (1387)
T KOG1016|consen 435 PDLVICDEGHRIKNIT--AEISMALKAIRTRR-RIVLTGYPLQNNLLE 479 (1387)
T ss_pred CCeEEecCCceeccch--HHHHHHHHHhhhce-eEEEeccccccchHH
Confidence 5899999999987654 33333333333333 455555 44444433
No 481
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=37.71 E-value=46 Score=27.47 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=28.6
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeec
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 96 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 96 (286)
...+++|||++|.+.... .+.+.+++..-|.+..++++|..+
T Consensus 94 ~~~kv~ii~~ad~mt~~A-aNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDA-ISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhhcCCCCeEEEEEeCCh
Confidence 446899999999875443 566777777755566555555554
No 482
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=37.65 E-value=2.8e+02 Score=24.15 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhccCcceEEEe-----cchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCc
Q 023157 139 KLETLCDLYETLAITQSVIFV-----NTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 213 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~-----~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 213 (286)
-+.......+..+.+++.|+. ++...|+.+++-|.+.|..+..+.-... +..++.+.... -..++|+++...
T Consensus 233 i~~~Y~~W~~~~~~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~--~~~eI~~~i~~-a~~~vvGsPT~~ 309 (388)
T COG0426 233 IVEAYRDWAEGQPKGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA--DPSEIVEEILD-AKGLVVGSPTIN 309 (388)
T ss_pred HHHHHHHHHccCCcceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC--CHHHHHHHHhh-cceEEEecCccc
Confidence 445555555555444565544 3577788888899999988877765443 56666666554 336788888766
Q ss_pred cCCC
Q 023157 214 RGID 217 (286)
Q Consensus 214 ~Gid 217 (286)
.++-
T Consensus 310 ~~~~ 313 (388)
T COG0426 310 GGAH 313 (388)
T ss_pred CCCC
Confidence 6553
No 483
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.39 E-value=43 Score=31.07 Aligned_cols=39 Identities=8% Similarity=0.186 Sum_probs=22.9
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
..-+++||||+|.+.... .+.+.+.+..-+....+|+++
T Consensus 126 ~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred CCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 445899999999875433 334444444444444444444
No 484
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=37.11 E-value=88 Score=31.27 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=24.5
Q ss_pred CCCCccEEEEehhhHhhccccHHHHHHHHHhCC-cCccEEEEEee
Q 023157 52 RPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGVFSAT 95 (286)
Q Consensus 52 ~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT 95 (286)
.+..-++|||||+.++.... +..+++..+ ..++++++.-+
T Consensus 465 ~l~~~~vlVIDEAsMv~~~~----m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 465 QLDNKTVFVLDEAGMVASRQ----MALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred CCCCCcEEEEECcccCCHHH----HHHHHHHHHhcCCEEEEECCH
Confidence 34445799999999764333 334444443 35677776655
No 485
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=37.04 E-value=1.8e+02 Score=21.80 Aligned_cols=87 Identities=17% Similarity=0.122 Sum_probs=49.8
Q ss_pred HHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCC---
Q 023157 141 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGID--- 217 (286)
Q Consensus 141 ~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid--- 217 (286)
+.+........+.+++|.-...-....+++.|...|..+.+.+...+ +..+.+ .+.+++|++.....=++
T Consensus 33 ~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~--~l~~~l-----~~aDiVIsat~~~~ii~~~~ 105 (168)
T cd01080 33 ELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK--NLKEHT-----KQADIVIVAVGKPGLVKGDM 105 (168)
T ss_pred HHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch--hHHHHH-----hhCCEEEEcCCCCceecHHH
Confidence 33333433445566766666544466699999988887777776532 222222 24566655533222222
Q ss_pred CCCCcEEEEccCCCCcc
Q 023157 218 VQQVSLVINYDLPTQPE 234 (286)
Q Consensus 218 i~~~~~vi~~~~~~s~~ 234 (286)
++.-..+|.++.|.+..
T Consensus 106 ~~~~~viIDla~prdvd 122 (168)
T cd01080 106 VKPGAVVIDVGINRVPD 122 (168)
T ss_pred ccCCeEEEEccCCCccc
Confidence 23345788888888776
No 486
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=37.02 E-value=39 Score=31.07 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=22.3
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
..+++||||+|.+.... ...+.+.+..-+..+.++++|
T Consensus 119 ~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEEEC
Confidence 35799999999874332 344555555444444444444
No 487
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=36.84 E-value=36 Score=31.14 Aligned_cols=28 Identities=7% Similarity=0.279 Sum_probs=17.4
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
...+++||||+|.+.... .+.+.+.+..
T Consensus 118 ~~~KVvIIDEa~~Ls~~a-~naLLK~LEe 145 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSA-FNALLKTIEE 145 (563)
T ss_pred CCCEEEEEEChhhcCHHH-HHHHHHhhcc
Confidence 456899999999875433 2333344443
No 488
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=36.79 E-value=1.5e+02 Score=20.75 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=35.7
Q ss_pred ceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec
Q 023157 154 QSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 210 (286)
Q Consensus 154 ~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 210 (286)
.++|=+.+...+....+...+++..+..-..+.+.++...+.+ +.. +..++++.+
T Consensus 69 DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~-~a~-~~~vl~a~N 123 (124)
T PF01113_consen 69 DVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE-LAK-KIPVLIAPN 123 (124)
T ss_dssp SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH-HTT-TSEEEE-SS
T ss_pred CEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-Hhc-cCCEEEeCC
Confidence 4666666778888888888788888888888887666544444 333 388888765
No 489
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=36.73 E-value=97 Score=29.60 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=22.2
Q ss_pred CCCccEEEEehhhHhhccccHHHHHHHHHh-CCcCccEEEEE
Q 023157 53 PDYIKMFVLDEADEMLSRGFKDQIYDIFQL-LPAKVQVGVFS 93 (286)
Q Consensus 53 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~S 93 (286)
+...++|||||+.++....+ ..++.. .+...++|++.
T Consensus 437 ~~~~~llIvDEasMv~~~~~----~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 437 LSDKDVLVIDEAGMVGSRQM----ARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred CCCCcEEEEECcccCCHHHH----HHHHHHHHhcCCEEEEEC
Confidence 44568999999997654432 233332 22456666665
No 490
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=36.68 E-value=3.3e+02 Score=24.72 Aligned_cols=24 Identities=4% Similarity=-0.022 Sum_probs=12.7
Q ss_pred HHHHHHHHhcCCCeeEEecCCCCH
Q 023157 165 VDWLTDKMRSRDHTVSATHGDMDQ 188 (286)
Q Consensus 165 ~~~l~~~l~~~~~~~~~~~~~~~~ 188 (286)
|..+|++++..|.++.++..+++.
T Consensus 242 a~tiAEyfrd~G~~VLli~DdlTr 265 (502)
T PRK09281 242 GCAMGEYFMDNGKDALIVYDDLSK 265 (502)
T ss_pred HHHHHHHHHHcCCCEEEEecCchH
Confidence 444455555555555555555543
No 491
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=36.65 E-value=1.5e+02 Score=29.09 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhc-cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec
Q 023157 139 KLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 210 (286)
Q Consensus 139 ~~~~l~~~~~~~-~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 210 (286)
-+..+..+.... ..++-+|.+|.-.-... ...+....-++..+.+.-+++.|.......+.|+.+||++|-
T Consensus 430 tIsLitYLmE~K~~~GP~LvivPlstL~NW-~~Ef~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTty 501 (1157)
T KOG0386|consen 430 TISLITYLMEHKQMQGPFLIIVPLSTLVNW-SSEFPKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTY 501 (1157)
T ss_pred HHHHHHHHHHHcccCCCeEEeccccccCCc-hhhccccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeH
Confidence 444555555432 34688888887433322 223344445667777777999999999999999999999994
No 492
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=36.54 E-value=2.1e+02 Score=23.36 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=41.8
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC-CCeeEEecCCCCHHH-HHHHHHHhhc--CCCcEEEEec
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNT-RDIIMREFRS--GSSRVLITTD 210 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~-r~~~~~~f~~--~~~~vlv~T~ 210 (286)
++..+++...+.+-.+.+++.+.+. +..+.++--+++..+ ...+.+..+. +.+++||.-.
T Consensus 29 ~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNA 92 (265)
T COG0300 29 RGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVNNA 92 (265)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEECC
Confidence 3467888888888899999988764 567777777876544 3444444444 3788888753
No 493
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=36.21 E-value=1e+02 Score=18.84 Aligned_cols=53 Identities=8% Similarity=-0.004 Sum_probs=33.8
Q ss_pred ceEEEe-cchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEE
Q 023157 154 QSVIFV-NTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 206 (286)
Q Consensus 154 ~~ivf~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 206 (286)
++.+|+ ++...+..+.+.|.+.++....+.=......+....+.-..+...++
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v 55 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQI 55 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 455666 45788999999999999887777665555544444443333333333
No 494
>PRK01172 ski2-like helicase; Provisional
Probab=36.12 E-value=1.5e+02 Score=27.98 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=45.1
Q ss_pred CcceEEEecchhhHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----CccC-CCCCCCc
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----LARG-IDVQQVS 222 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~G-idi~~~~ 222 (286)
+.++++.+|++.-|.+.++.+++ .|..+....|+...... + .+..+++|+|.- +..+ ..+.+++
T Consensus 65 ~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~------~-~~~~dIiv~Tpek~~~l~~~~~~~l~~v~ 137 (674)
T PRK01172 65 GLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD------F-IKRYDVVILTSEKADSLIHHDPYIINDVG 137 (674)
T ss_pred CCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh------h-hccCCEEEECHHHHHHHHhCChhHHhhcC
Confidence 56899999999999988887764 46778788887654321 1 135689999961 2222 2355677
Q ss_pred EEEE
Q 023157 223 LVIN 226 (286)
Q Consensus 223 ~vi~ 226 (286)
+||+
T Consensus 138 lvVi 141 (674)
T PRK01172 138 LIVA 141 (674)
T ss_pred EEEE
Confidence 7764
No 495
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=36.01 E-value=71 Score=30.84 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=35.0
Q ss_pred cCceEEEEEcCcchHHHHHHHhC----CCcEEEeCcHHHHHHHhcCCCCCCCccEEEE
Q 023157 8 LGVKVHACVGGTSVREDQRILQA----GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 61 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~----~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIi 61 (286)
.++.+..+||+.+.+++.+.+.. ...|+|+| ++.. ..+...++++||=
T Consensus 235 ~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVAT-----nIAE-rgItIp~V~~VID 286 (819)
T TIGR01970 235 SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLAT-----NIAE-TSLTIEGIRVVID 286 (819)
T ss_pred CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEec-----chHh-hcccccCceEEEE
Confidence 36889999999998888776643 47899999 3333 4567777765553
No 496
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=35.72 E-value=1e+02 Score=26.13 Aligned_cols=62 Identities=13% Similarity=0.090 Sum_probs=34.4
Q ss_pred CCcEEEeCcHH---------HHHHH---hcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe
Q 023157 31 GVHVVVGTPGR---------VFDML---RRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 31 ~~~iii~Tp~~---------l~~~~---~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
.+|+.+.+|+. +.++. ...+ .....+++|||+++.+-... .+.+.+.++.=|.+.-++++|.
T Consensus 73 HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~-~~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 73 HPDYYTLTPEKGKSSLGVDAVREVTEKLYEHA-RLGGAKVVWLPDAALLTDAA-ANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred CCCEEEEecccccccCCHHHHHHHHHHHhhcc-ccCCceEEEEcchHhhCHHH-HHHHHHHhcCCCCCeEEEEEEC
Confidence 58888887752 22222 1122 23446899999999875443 4555555555333333444443
No 497
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=35.50 E-value=2.9e+02 Score=27.07 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=43.2
Q ss_pred hHHHHHHHHHhhccCcceEEEecchhhHH----HHHHHHhcCCCeeEEecCCCCHHHHHHHH
Q 023157 138 WKLETLCDLYETLAITQSVIFVNTRRKVD----WLTDKMRSRDHTVSATHGDMDQNTRDIIM 195 (286)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~ivf~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 195 (286)
.....+-..+....|..+-|.+.+..-|. .+...++-.|.++..+.+++++++|...+
T Consensus 112 TL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~aY 173 (939)
T PRK12902 112 TLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNY 173 (939)
T ss_pred hHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHhc
Confidence 34566677778888899999998855544 44444555699999999999998887654
No 498
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.38 E-value=48 Score=29.87 Aligned_cols=16 Identities=38% Similarity=0.461 Sum_probs=12.5
Q ss_pred CCccEEEEehhhHhhc
Q 023157 54 DYIKMFVLDEADEMLS 69 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~ 69 (286)
....+|||||+|.+..
T Consensus 115 ~~~kVVIIDEad~ls~ 130 (504)
T PRK14963 115 GGRKVYILDEAHMMSK 130 (504)
T ss_pred CCCeEEEEECccccCH
Confidence 4568999999997643
No 499
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=35.17 E-value=55 Score=29.57 Aligned_cols=40 Identities=13% Similarity=-0.100 Sum_probs=24.2
Q ss_pred CCCccEEEEehhhHhhccccHHHHHHHHHhCC--cCccEEEEEe
Q 023157 53 PDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP--AKVQVGVFSA 94 (286)
Q Consensus 53 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~~SA 94 (286)
-.+..+.|+||.|.+...+ ..+..+..-+. ++.++++.|.
T Consensus 182 g~~~~~~I~DEih~f~~~~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 182 GLNSVGAIIDELHLFGKQE--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred CCCcceEEEehhhhhcCHH--HHHHHHHhhhccCcCceEEEEec
Confidence 3345799999999876653 33444433332 3556666665
No 500
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=34.99 E-value=2.6e+02 Score=23.08 Aligned_cols=79 Identities=18% Similarity=0.106 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCC
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 218 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi 218 (286)
.++.+.+..+...-+-.+||++-...++.+.+.+..--..+..+..+.|..+-.++.+..++.. -.++..+. .|+=.
T Consensus 53 Vf~tV~EA~~~~~a~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g-~~iiGPnc--pGiI~ 129 (293)
T COG0074 53 VFNTVEEAVKETGANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG-TRLIGPNC--PGIIT 129 (293)
T ss_pred HHHHHHHHHHhhCCCEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC-CEEECCCC--CccCc
Confidence 6677777777777778999999999999998888665557888889999988888888776544 33444442 45555
Q ss_pred CC
Q 023157 219 QQ 220 (286)
Q Consensus 219 ~~ 220 (286)
|.
T Consensus 130 Pg 131 (293)
T COG0074 130 PG 131 (293)
T ss_pred CC
Confidence 55
Done!