Query 023157
Match_columns 286
No_of_seqs 146 out of 1482
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 17:18:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 6.1E-47 2.1E-51 326.5 31.4 282 2-285 150-434 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 1.1E-46 3.8E-51 323.4 27.1 285 2-286 126-410 (410)
3 3eiq_A Eukaryotic initiation f 100.0 1.8E-46 6.3E-51 322.4 24.9 285 2-286 129-414 (414)
4 2i4i_A ATP-dependent RNA helic 100.0 4.2E-45 1.4E-49 314.3 27.9 282 3-285 123-409 (417)
5 1s2m_A Putative ATP-dependent 100.0 2.9E-44 9.8E-49 307.5 29.5 281 3-285 111-391 (400)
6 1xti_A Probable ATP-dependent 100.0 1.1E-42 3.8E-47 296.8 30.2 274 9-283 105-382 (391)
7 1fuu_A Yeast initiation factor 100.0 2.7E-45 9.3E-50 313.2 12.8 283 3-286 111-393 (394)
8 1hv8_A Putative ATP-dependent 100.0 1.1E-41 3.8E-46 288.0 29.8 269 4-279 97-365 (367)
9 3pey_A ATP-dependent RNA helic 100.0 1.3E-41 4.3E-46 290.5 27.0 274 3-280 97-379 (395)
10 3fht_A ATP-dependent RNA helic 100.0 1E-41 3.5E-46 292.7 26.3 270 9-281 124-402 (412)
11 2z0m_A 337AA long hypothetical 100.0 9E-40 3.1E-44 273.3 25.3 259 3-273 78-336 (337)
12 3fho_A ATP-dependent RNA helic 100.0 3.1E-41 1.1E-45 296.2 16.9 274 4-281 212-493 (508)
13 3i5x_A ATP-dependent RNA helic 100.0 1.4E-39 4.8E-44 290.0 26.3 268 9-276 178-466 (563)
14 3sqw_A ATP-dependent RNA helic 100.0 1.6E-39 5.5E-44 289.9 26.2 269 8-276 126-415 (579)
15 3fmp_B ATP-dependent RNA helic 100.0 1.6E-41 5.4E-46 296.8 8.8 270 9-281 191-469 (479)
16 2v1x_A ATP-dependent DNA helic 100.0 3.6E-38 1.2E-42 279.6 23.2 257 8-267 107-382 (591)
17 1oyw_A RECQ helicase, ATP-depe 100.0 1.4E-37 4.7E-42 273.2 24.1 254 8-268 88-352 (523)
18 3oiy_A Reverse gyrase helicase 100.0 3.9E-37 1.3E-41 264.4 17.6 250 3-272 86-376 (414)
19 4a2p_A RIG-I, retinoic acid in 100.0 1.2E-35 4E-40 264.4 14.6 258 3-262 77-511 (556)
20 2ykg_A Probable ATP-dependent 100.0 1.1E-35 3.8E-40 271.1 13.8 276 3-280 83-541 (696)
21 1wp9_A ATP-dependent RNA helic 100.0 6.4E-34 2.2E-38 249.0 23.1 251 10-262 81-478 (494)
22 3tbk_A RIG-I helicase domain; 100.0 1.5E-34 5.1E-39 257.1 18.4 272 3-277 74-529 (555)
23 2zj8_A DNA helicase, putative 100.0 2.9E-34 9.8E-39 262.0 19.4 261 8-281 94-407 (720)
24 3l9o_A ATP-dependent RNA helic 100.0 2.9E-34 9.8E-39 269.6 17.7 259 11-280 253-616 (1108)
25 2xgj_A ATP-dependent RNA helic 100.0 4.9E-33 1.7E-37 259.2 25.5 247 11-267 155-508 (1010)
26 2p6r_A Afuhel308 helicase; pro 100.0 5.9E-34 2E-38 259.3 18.8 262 8-282 94-409 (702)
27 2va8_A SSO2462, SKI2-type heli 100.0 1.7E-33 5.8E-38 257.0 21.9 263 7-282 100-430 (715)
28 4a2q_A RIG-I, retinoic acid in 100.0 4E-34 1.4E-38 263.5 15.5 258 3-262 318-752 (797)
29 4ddu_A Reverse gyrase; topoiso 100.0 1.9E-33 6.5E-38 263.9 16.9 252 3-272 143-503 (1104)
30 1fuk_A Eukaryotic initiation f 100.0 3.7E-32 1.3E-36 203.8 18.9 163 124-286 2-164 (165)
31 4a4z_A Antiviral helicase SKI2 100.0 1.7E-32 5.7E-37 255.6 19.7 248 9-267 108-502 (997)
32 4a2w_A RIG-I, retinoic acid in 100.0 2.7E-33 9.4E-38 260.7 14.3 257 4-262 319-752 (936)
33 4gl2_A Interferon-induced heli 100.0 9.7E-33 3.3E-37 251.8 15.3 106 152-259 400-519 (699)
34 1gku_B Reverse gyrase, TOP-RG; 100.0 2.2E-33 7.4E-38 263.5 10.5 252 3-273 121-468 (1054)
35 2p6n_A ATP-dependent RNA helic 100.0 1E-31 3.4E-36 205.5 15.8 180 104-285 8-188 (191)
36 2hjv_A ATP-dependent RNA helic 100.0 5E-31 1.7E-35 197.2 18.5 158 121-279 5-162 (163)
37 2eyq_A TRCF, transcription-rep 100.0 6.5E-31 2.2E-35 248.2 23.4 241 4-259 675-922 (1151)
38 1gm5_A RECG; helicase, replica 100.0 2.5E-32 8.4E-37 247.4 12.7 251 3-267 439-705 (780)
39 2jgn_A DBX, DDX3, ATP-dependen 100.0 2.1E-31 7.1E-36 203.0 15.8 164 121-285 15-179 (185)
40 2rb4_A ATP-dependent RNA helic 100.0 6.5E-31 2.2E-35 198.9 18.0 160 122-281 4-169 (175)
41 1t5i_A C_terminal domain of A 100.0 3.2E-31 1.1E-35 199.7 16.2 161 123-284 3-164 (172)
42 1tf5_A Preprotein translocase 100.0 2.2E-30 7.4E-35 231.4 20.4 255 2-261 145-547 (844)
43 4f92_B U5 small nuclear ribonu 100.0 2.2E-30 7.5E-35 251.2 21.9 260 3-267 995-1316(1724)
44 2oca_A DAR protein, ATP-depend 100.0 9.6E-32 3.3E-36 236.7 9.6 241 4-256 180-452 (510)
45 4f92_B U5 small nuclear ribonu 100.0 4.2E-31 1.4E-35 256.2 13.5 259 4-267 157-481 (1724)
46 3eaq_A Heat resistant RNA depe 100.0 2.6E-29 8.9E-34 195.6 17.4 154 126-280 6-159 (212)
47 3o8b_A HCV NS3 protease/helica 100.0 3.4E-30 1.2E-34 227.8 13.5 232 5-277 278-536 (666)
48 1yks_A Genome polyprotein [con 100.0 2.7E-32 9.1E-37 234.9 -0.2 207 51-282 95-325 (440)
49 2fsf_A Preprotein translocase 100.0 1.5E-29 5.2E-34 225.4 17.0 124 136-261 423-585 (853)
50 2xau_A PRE-mRNA-splicing facto 100.0 5.6E-30 1.9E-34 233.3 12.7 222 31-261 185-445 (773)
51 1nkt_A Preprotein translocase 100.0 3.5E-28 1.2E-32 217.1 22.7 256 2-262 173-620 (922)
52 2fwr_A DNA repair protein RAD2 100.0 4.7E-30 1.6E-34 223.9 10.5 233 4-259 153-454 (472)
53 3i32_A Heat resistant RNA depe 100.0 2.2E-28 7.4E-33 199.0 18.1 155 125-280 2-156 (300)
54 2whx_A Serine protease/ntpase/ 100.0 2.2E-29 7.6E-34 224.1 13.0 224 31-280 254-502 (618)
55 3dmq_A RNA polymerase-associat 100.0 8.2E-29 2.8E-33 231.1 12.5 134 138-271 489-625 (968)
56 2yjt_D ATP-dependent RNA helic 99.9 1.5E-30 5E-35 196.0 0.0 156 124-279 2-157 (170)
57 2jlq_A Serine protease subunit 100.0 2.6E-28 9E-33 210.9 13.8 203 31-259 87-311 (451)
58 2wv9_A Flavivirin protease NS2 100.0 3.6E-28 1.2E-32 217.6 14.1 203 51-278 328-555 (673)
59 2v6i_A RNA helicase; membrane, 100.0 1E-27 3.5E-32 206.0 15.5 200 31-256 70-288 (431)
60 3rc3_A ATP-dependent RNA helic 100.0 3E-27 1E-31 211.2 19.0 240 8-276 202-461 (677)
61 3h1t_A Type I site-specific re 100.0 9E-28 3.1E-32 214.8 15.2 226 30-258 273-557 (590)
62 2z83_A Helicase/nucleoside tri 99.9 2.8E-28 9.7E-33 211.0 8.5 199 31-259 89-313 (459)
63 2d7d_A Uvrabc system protein B 99.9 2.9E-26 1E-30 205.9 20.3 230 37-283 320-589 (661)
64 1z63_A Helicase of the SNF2/RA 99.9 4.8E-26 1.6E-30 199.9 18.2 121 139-259 326-453 (500)
65 1c4o_A DNA nucleotide excision 99.9 7.2E-26 2.4E-30 203.5 19.0 132 151-283 438-583 (664)
66 3jux_A Protein translocase sub 99.9 3.1E-24 1.1E-28 188.2 22.8 168 88-261 411-589 (822)
67 1z3i_X Similar to RAD54-like; 99.9 1.4E-23 4.7E-28 188.7 21.7 109 151-259 415-528 (644)
68 3mwy_W Chromo domain-containin 99.9 8.5E-24 2.9E-28 194.5 18.0 131 139-269 557-696 (800)
69 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 8.9E-22 3E-26 183.1 19.3 233 17-256 360-706 (1038)
70 1z5z_A Helicase of the SNF2/RA 99.8 1.5E-20 5E-25 151.1 12.2 123 137-259 95-224 (271)
71 3fe2_A Probable ATP-dependent 99.7 1.4E-17 4.9E-22 132.2 11.4 117 3-119 124-240 (242)
72 2ipc_A Preprotein translocase 99.7 2.5E-15 8.6E-20 134.7 23.8 65 2-68 141-215 (997)
73 1wrb_A DJVLGB; RNA helicase, D 99.7 6.7E-17 2.3E-21 129.2 12.6 126 3-128 122-251 (253)
74 1vec_A ATP-dependent RNA helic 99.7 3.1E-16 1.1E-20 121.4 13.3 111 4-114 94-205 (206)
75 3iuy_A Probable ATP-dependent 99.7 3.4E-16 1.2E-20 123.1 12.6 109 7-115 119-227 (228)
76 3ber_A Probable ATP-dependent 99.7 3E-16 1E-20 125.0 12.4 114 3-116 133-247 (249)
77 1q0u_A Bstdead; DEAD protein, 99.7 1.6E-16 5.6E-21 124.2 9.4 110 9-118 104-213 (219)
78 3bor_A Human initiation factor 99.7 2.8E-16 9.5E-21 124.3 10.8 114 3-116 120-234 (237)
79 1qde_A EIF4A, translation init 99.7 3.6E-16 1.2E-20 122.6 11.0 116 3-119 104-219 (224)
80 3ly5_A ATP-dependent RNA helic 99.7 5.5E-16 1.9E-20 124.4 11.9 110 2-111 147-257 (262)
81 2oxc_A Probable ATP-dependent 99.7 8.6E-16 2.9E-20 121.0 11.3 106 9-115 121-227 (230)
82 2pl3_A Probable ATP-dependent 99.6 1.5E-15 5.3E-20 120.0 12.2 114 3-117 119-233 (236)
83 2gxq_A Heat resistant RNA depe 99.6 2E-15 6.9E-20 116.8 12.4 107 10-116 99-205 (207)
84 1t6n_A Probable ATP-dependent 99.6 1.9E-15 6.6E-20 118.1 11.6 112 4-115 105-219 (220)
85 3fmo_B ATP-dependent RNA helic 99.6 1.1E-14 3.8E-19 118.9 9.7 112 4-118 185-299 (300)
86 3dkp_A Probable ATP-dependent 99.5 2.6E-14 8.9E-19 113.6 8.0 117 3-119 120-243 (245)
87 2vl7_A XPD; helicase, unknown 99.3 7.5E-12 2.6E-16 110.3 11.9 109 142-258 375-520 (540)
88 3b6e_A Interferon-induced heli 99.1 6.5E-11 2.2E-15 91.8 4.4 87 9-95 110-216 (216)
89 3crv_A XPD/RAD3 related DNA he 99.1 9.5E-08 3.3E-12 84.5 23.9 110 143-259 385-531 (551)
90 3llm_A ATP-dependent RNA helic 99.0 1.2E-09 4.2E-14 85.9 7.0 67 30-100 154-222 (235)
91 1rif_A DAR protein, DNA helica 98.8 1.5E-09 5.1E-14 87.8 2.1 85 6-100 182-266 (282)
92 4a15_A XPD helicase, ATP-depen 98.7 4E-07 1.4E-11 81.4 15.7 111 143-258 440-583 (620)
93 2fz4_A DNA repair protein RAD2 98.5 5.4E-08 1.9E-12 76.5 4.1 75 8-99 156-231 (237)
94 3hgt_A HDA1 complex subunit 3; 98.3 2.4E-05 8.2E-10 63.3 13.4 118 139-261 110-239 (328)
95 1gm5_A RECG; helicase, replica 96.0 0.018 6.2E-07 52.8 7.9 79 151-229 416-499 (780)
96 3oiy_A Reverse gyrase helicase 95.5 0.039 1.3E-06 46.6 7.5 78 150-227 62-146 (414)
97 1oyw_A RECQ helicase, ATP-depe 94.2 0.44 1.5E-05 41.6 10.9 121 152-272 65-197 (523)
98 2v1x_A ATP-dependent DNA helic 94.1 0.23 7.7E-06 44.2 9.0 122 152-273 84-224 (591)
99 4ddu_A Reverse gyrase; topoiso 94.0 0.14 4.8E-06 49.0 7.8 76 150-226 119-202 (1104)
100 2eyq_A TRCF, transcription-rep 93.4 0.29 1E-05 47.1 9.0 76 151-226 651-731 (1151)
101 1t6n_A Probable ATP-dependent 93.3 0.41 1.4E-05 36.3 8.2 71 153-226 83-164 (220)
102 3ber_A Probable ATP-dependent 92.9 0.62 2.1E-05 36.2 8.8 75 148-226 107-192 (249)
103 2oxc_A Probable ATP-dependent 92.4 0.37 1.3E-05 36.9 6.8 72 150-226 90-172 (230)
104 3fe2_A Probable ATP-dependent 91.6 0.65 2.2E-05 35.8 7.5 72 151-226 101-182 (242)
105 1vec_A ATP-dependent RNA helic 90.5 1.7 5.9E-05 32.2 8.7 72 151-226 70-152 (206)
106 1xti_A Probable ATP-dependent 89.9 1.2 4.3E-05 36.7 8.1 73 151-226 75-158 (391)
107 3iuy_A Probable ATP-dependent 89.2 0.96 3.3E-05 34.4 6.5 72 151-226 93-173 (228)
108 1qde_A EIF4A, translation init 88.5 0.67 2.3E-05 35.1 5.1 72 150-226 80-161 (224)
109 2gxq_A Heat resistant RNA depe 88.4 1.5 5.2E-05 32.5 7.0 72 151-226 71-150 (207)
110 3bor_A Human initiation factor 88.4 1 3.4E-05 34.6 6.1 73 151-226 97-179 (237)
111 1wrb_A DJVLGB; RNA helicase, D 87.6 1.7 5.9E-05 33.5 7.1 71 152-226 100-180 (253)
112 2l82_A Designed protein OR32; 87.0 3.5 0.00012 26.9 6.9 50 155-204 5-54 (162)
113 3ly5_A ATP-dependent RNA helic 85.4 3 0.0001 32.5 7.4 72 151-226 125-207 (262)
114 2pl3_A Probable ATP-dependent 85.3 1.8 6.1E-05 33.0 6.0 71 151-226 96-177 (236)
115 1gku_B Reverse gyrase, TOP-RG; 84.3 3.2 0.00011 39.6 8.2 74 151-226 98-181 (1054)
116 4a15_A XPD helicase, ATP-depen 83.5 0.43 1.5E-05 42.7 1.8 39 30-69 174-218 (620)
117 2i4i_A ATP-dependent RNA helic 83.2 8.6 0.00029 31.9 9.8 70 153-226 102-181 (417)
118 1fuu_A Yeast initiation factor 82.9 5 0.00017 33.0 8.2 71 151-226 88-168 (394)
119 2db3_A ATP-dependent RNA helic 82.7 4 0.00014 34.5 7.5 71 152-226 129-209 (434)
120 1wp9_A ATP-dependent RNA helic 81.6 8.1 0.00028 32.6 9.2 71 151-226 51-131 (494)
121 1g5t_A COB(I)alamin adenosyltr 80.9 3.1 0.00011 31.0 5.4 50 54-103 119-170 (196)
122 1hv8_A Putative ATP-dependent 80.6 10 0.00034 30.7 9.1 71 151-226 73-153 (367)
123 1tf5_A Preprotein translocase 80.4 7.3 0.00025 35.9 8.6 73 148-226 120-209 (844)
124 2fsf_A Preprotein translocase 79.7 7.4 0.00025 35.9 8.3 73 148-226 111-200 (853)
125 1s2m_A Putative ATP-dependent 79.1 6.6 0.00023 32.4 7.6 72 151-226 88-169 (400)
126 3fmo_B ATP-dependent RNA helic 78.9 2.3 7.7E-05 34.0 4.5 69 151-226 161-241 (300)
127 1q0u_A Bstdead; DEAD protein, 78.8 1.6 5.3E-05 33.0 3.3 72 151-226 71-156 (219)
128 3tbk_A RIG-I helicase domain; 77.6 3.2 0.00011 36.1 5.4 71 152-226 52-133 (555)
129 3gk5_A Uncharacterized rhodane 77.4 2 7E-05 28.3 3.2 37 151-187 54-90 (108)
130 3foj_A Uncharacterized protein 77.4 2.2 7.4E-05 27.6 3.3 37 151-187 55-91 (100)
131 1nkt_A Preprotein translocase 77.3 8.8 0.0003 35.7 8.1 74 147-226 147-237 (922)
132 3eme_A Rhodanese-like domain p 77.2 2.1 7.2E-05 27.9 3.2 37 151-187 55-91 (103)
133 2ipc_A Preprotein translocase 76.9 8.1 0.00028 36.1 7.7 58 147-210 115-176 (997)
134 3eiq_A Eukaryotic initiation f 76.8 8.5 0.00029 31.8 7.7 73 151-226 107-189 (414)
135 4a2p_A RIG-I, retinoic acid in 76.7 3.9 0.00014 35.5 5.8 71 152-226 55-136 (556)
136 3iwh_A Rhodanese-like domain p 76.5 2.3 7.9E-05 27.9 3.2 36 151-186 55-90 (103)
137 4a2q_A RIG-I, retinoic acid in 76.1 6.1 0.00021 36.4 7.0 71 152-226 296-377 (797)
138 2r2a_A Uncharacterized protein 75.4 1.8 6.1E-05 32.4 2.7 40 57-96 89-133 (199)
139 3dmn_A Putative DNA helicase; 73.9 22 0.00075 25.5 10.0 65 152-231 61-125 (174)
140 2j0s_A ATP-dependent RNA helic 73.7 12 0.00042 30.9 7.8 72 151-226 104-185 (410)
141 3dkp_A Probable ATP-dependent 73.5 2.1 7.2E-05 32.9 2.8 73 151-226 97-181 (245)
142 2chg_A Replication factor C sm 73.3 7.7 0.00026 28.6 6.0 41 54-95 101-141 (226)
143 1w36_D RECD, exodeoxyribonucle 73.1 4.7 0.00016 35.9 5.3 37 55-95 262-298 (608)
144 2q5c_A NTRC family transcripti 70.5 28 0.00095 25.7 8.3 114 153-277 5-122 (196)
145 1wv9_A Rhodanese homolog TT165 69.7 3.3 0.00011 26.4 2.7 35 153-187 54-88 (94)
146 2hjv_A ATP-dependent RNA helic 69.4 12 0.0004 26.6 5.9 51 8-64 58-112 (163)
147 3hix_A ALR3790 protein; rhodan 68.2 4 0.00014 26.7 2.9 37 151-187 51-88 (106)
148 2gno_A DNA polymerase III, gam 67.1 4.2 0.00014 32.6 3.3 82 10-93 18-119 (305)
149 3g5j_A Putative ATP/GTP bindin 66.8 6.4 0.00022 26.7 3.9 35 153-187 90-125 (134)
150 2z0m_A 337AA long hypothetical 66.5 16 0.00054 29.1 6.8 70 152-226 56-135 (337)
151 4gl2_A Interferon-induced heli 66.4 2.8 9.5E-05 37.9 2.4 70 153-226 57-142 (699)
152 2orw_A Thymidine kinase; TMTK, 66.2 8.7 0.0003 28.1 4.7 26 55-81 76-101 (184)
153 1sxj_E Activator 1 40 kDa subu 65.6 5.4 0.00019 32.4 3.8 42 55-97 134-175 (354)
154 1iqp_A RFCS; clamp loader, ext 65.6 10 0.00035 30.2 5.5 40 54-94 109-148 (327)
155 2fsx_A RV0390, COG0607: rhodan 65.3 7.4 0.00025 27.2 4.0 37 151-187 79-116 (148)
156 3eaq_A Heat resistant RNA depe 65.2 12 0.0004 28.0 5.3 48 8-61 54-105 (212)
157 3flh_A Uncharacterized protein 64.1 3.6 0.00012 27.8 2.1 37 151-187 70-108 (124)
158 3s99_A Basic membrane lipoprot 63.8 59 0.002 26.5 9.8 60 4-63 53-118 (356)
159 2p6n_A ATP-dependent RNA helic 63.5 16 0.00055 26.7 5.8 50 8-63 77-130 (191)
160 1d2n_A N-ethylmaleimide-sensit 63.4 18 0.0006 28.1 6.3 44 56-99 125-178 (272)
161 3nhv_A BH2092 protein; alpha-b 63.0 5.4 0.00019 27.8 2.9 37 151-187 71-109 (144)
162 3e1s_A Exodeoxyribonuclease V, 62.7 7.5 0.00026 34.3 4.3 36 55-94 279-314 (574)
163 1l8q_A Chromosomal replication 62.6 6 0.00021 31.8 3.5 43 56-98 99-142 (324)
164 1t5i_A C_terminal domain of A 62.4 23 0.00079 25.3 6.4 51 8-64 54-108 (172)
165 3co5_A Putative two-component 62.4 8.8 0.0003 26.5 3.9 41 57-98 77-118 (143)
166 2kjq_A DNAA-related protein; s 62.4 2.8 9.6E-05 29.5 1.3 43 54-97 82-125 (149)
167 2rb4_A ATP-dependent RNA helic 62.3 7.4 0.00025 28.0 3.7 51 7-63 56-110 (175)
168 2jtq_A Phage shock protein E; 62.2 7.4 0.00025 24.0 3.2 36 151-187 40-76 (85)
169 3u61_B DNA polymerase accessor 61.5 4.6 0.00016 32.4 2.6 40 55-94 105-144 (324)
170 2k0z_A Uncharacterized protein 61.4 9.2 0.00032 25.1 3.7 37 151-187 55-91 (110)
171 1fuk_A Eukaryotic initiation f 61.4 18 0.00061 25.6 5.6 51 8-64 53-107 (165)
172 2fz4_A DNA repair protein RAD2 61.3 45 0.0015 25.2 8.2 63 134-210 116-179 (237)
173 1qxn_A SUD, sulfide dehydrogen 61.1 5.7 0.0002 27.4 2.7 37 151-187 81-118 (137)
174 4a2w_A RIG-I, retinoic acid in 60.5 7.3 0.00025 36.7 4.1 71 152-226 296-377 (936)
175 1njg_A DNA polymerase III subu 59.6 7.7 0.00026 29.0 3.5 38 56-94 127-164 (250)
176 1a5t_A Delta prime, HOLB; zinc 59.2 6.8 0.00023 31.7 3.3 41 54-95 107-147 (334)
177 2ykg_A Probable ATP-dependent 59.0 15 0.0005 33.1 5.7 70 153-226 62-142 (696)
178 2fwr_A DNA repair protein RAD2 58.9 32 0.0011 29.1 7.6 46 152-210 133-179 (472)
179 1gmx_A GLPE protein; transfera 58.3 5.5 0.00019 26.0 2.2 37 151-187 57-94 (108)
180 1tq1_A AT5G66040, senescence-a 58.1 6 0.0002 26.9 2.4 37 151-187 81-118 (129)
181 1sxj_C Activator 1 40 kDa subu 57.7 18 0.00062 29.2 5.6 39 54-93 109-147 (340)
182 3b6e_A Interferon-induced heli 57.4 12 0.00042 27.5 4.3 71 152-226 82-168 (216)
183 3pey_A ATP-dependent RNA helic 57.2 23 0.00079 28.8 6.3 68 151-226 74-151 (395)
184 2b8t_A Thymidine kinase; deoxy 56.9 29 0.00098 26.3 6.2 32 35-67 70-101 (223)
185 3d1p_A Putative thiosulfate su 56.8 8.1 0.00028 26.6 2.9 37 151-187 90-127 (139)
186 3l9o_A ATP-dependent RNA helic 56.7 13 0.00044 35.7 5.1 65 151-226 226-296 (1108)
187 1vee_A Proline-rich protein fa 56.3 9.8 0.00033 26.0 3.2 37 151-187 73-110 (134)
188 3te6_A Regulatory protein SIR3 56.3 11 0.00036 30.5 3.9 42 56-97 133-174 (318)
189 3syl_A Protein CBBX; photosynt 56.2 10 0.00035 30.0 3.8 39 57-95 132-178 (309)
190 2hhg_A Hypothetical protein RP 55.3 6.7 0.00023 27.0 2.3 37 151-187 85-122 (139)
191 3n70_A Transport activator; si 55.3 11 0.00036 26.2 3.3 39 57-96 78-116 (145)
192 3bos_A Putative DNA replicatio 54.8 8.5 0.00029 28.9 3.0 40 31-70 80-119 (242)
193 3ilm_A ALR3790 protein; rhodan 54.7 9.1 0.00031 26.6 2.9 37 151-187 55-92 (141)
194 3e2i_A Thymidine kinase; Zn-bi 54.3 7.2 0.00025 29.5 2.4 26 54-80 100-125 (219)
195 3sqw_A ATP-dependent RNA helic 53.7 25 0.00087 30.8 6.2 71 153-226 96-181 (579)
196 3fht_A ATP-dependent RNA helic 53.1 18 0.00063 29.7 5.1 69 151-226 94-174 (412)
197 1sxj_D Activator 1 41 kDa subu 53.1 16 0.00054 29.5 4.6 39 55-94 133-171 (353)
198 3i5x_A ATP-dependent RNA helic 52.5 27 0.00093 30.4 6.2 71 153-226 147-232 (563)
199 2j48_A Two-component sensor ki 52.5 24 0.00081 22.4 4.7 101 139-245 13-117 (119)
200 1vp8_A Hypothetical protein AF 52.5 42 0.0014 24.8 6.0 73 140-212 32-108 (201)
201 2z4s_A Chromosomal replication 52.4 13 0.00046 31.4 4.1 86 10-96 130-236 (440)
202 1jr3_A DNA polymerase III subu 51.5 12 0.0004 30.6 3.5 37 56-93 120-156 (373)
203 3i32_A Heat resistant RNA depe 51.4 24 0.00082 28.1 5.2 51 7-63 50-104 (300)
204 3h4m_A Proteasome-activating n 51.3 22 0.00076 27.6 5.0 12 57-68 112-123 (285)
205 3cnb_A DNA-binding response re 51.1 51 0.0017 21.8 6.7 109 132-246 13-130 (143)
206 1sxj_B Activator 1 37 kDa subu 51.0 9.1 0.00031 30.4 2.7 38 56-94 108-145 (323)
207 2oca_A DAR protein, ATP-depend 50.3 59 0.002 27.8 7.9 69 151-226 156-231 (510)
208 2j9r_A Thymidine kinase; TK1, 50.1 20 0.00067 27.0 4.2 13 55-67 101-113 (214)
209 2v1u_A Cell division control p 49.6 16 0.00054 29.8 4.0 28 56-83 131-159 (387)
210 3hjh_A Transcription-repair-co 49.1 13 0.00044 32.0 3.4 75 141-228 372-446 (483)
211 1w5s_A Origin recognition comp 49.1 17 0.00059 30.0 4.3 13 57-69 140-152 (412)
212 1jbk_A CLPB protein; beta barr 48.9 21 0.0007 25.4 4.2 36 57-94 117-159 (195)
213 2p6r_A Afuhel308 helicase; pro 48.8 30 0.001 31.2 6.0 69 151-226 67-144 (702)
214 2jgn_A DBX, DDX3, ATP-dependen 47.1 15 0.00053 26.7 3.2 49 8-62 69-121 (185)
215 2qby_B CDC6 homolog 3, cell di 47.1 14 0.00048 30.2 3.4 37 58-95 136-173 (384)
216 3upu_A ATP-dependent DNA helic 46.8 27 0.00092 29.7 5.1 37 53-93 126-162 (459)
217 2p65_A Hypothetical protein PF 46.5 7.2 0.00025 27.9 1.3 12 57-68 117-128 (187)
218 4a4z_A Antiviral helicase SKI2 45.2 36 0.0012 32.4 6.0 49 151-210 81-131 (997)
219 1c4o_A DNA nucleotide excision 45.0 1E+02 0.0035 27.6 8.8 77 139-216 41-144 (664)
220 1jr3_D DNA polymerase III, del 44.7 39 0.0013 27.2 5.6 43 54-97 75-118 (343)
221 3lfu_A DNA helicase II; SF1 he 44.5 1.7E+02 0.0057 25.9 13.1 33 151-183 346-378 (647)
222 2chq_A Replication factor C sm 44.2 12 0.00043 29.5 2.5 16 54-69 101-116 (319)
223 3tg1_B Dual specificity protei 44.1 17 0.00059 25.6 3.0 35 152-186 93-136 (158)
224 2qgz_A Helicase loader, putati 43.8 42 0.0014 26.7 5.6 56 11-66 153-225 (308)
225 4fn4_A Short chain dehydrogena 43.6 92 0.0032 24.0 7.3 60 151-210 30-92 (254)
226 2o0j_A Terminase, DNA packagin 43.5 19 0.00064 30.0 3.5 14 56-69 274-287 (385)
227 3ec2_A DNA replication protein 43.0 11 0.00039 27.0 1.9 43 55-97 100-144 (180)
228 2qen_A Walker-type ATPase; unk 42.9 26 0.00088 28.0 4.3 37 57-95 130-172 (350)
229 2orv_A Thymidine kinase; TP4A 42.8 31 0.0011 26.4 4.3 25 55-82 90-114 (234)
230 3hjh_A Transcription-repair-co 42.8 1.4E+02 0.0049 25.5 8.9 100 139-239 27-144 (483)
231 1xx6_A Thymidine kinase; NESG, 42.7 19 0.00065 26.5 3.1 13 55-67 81-93 (191)
232 3kta_B Chromosome segregation 42.6 21 0.00071 25.8 3.3 37 57-93 88-124 (173)
233 4ag6_A VIRB4 ATPase, type IV s 42.5 22 0.00076 29.3 3.9 28 56-83 263-293 (392)
234 3fmp_B ATP-dependent RNA helic 42.4 22 0.00076 30.2 4.0 67 153-226 163-241 (479)
235 4e7p_A Response regulator; DNA 42.2 76 0.0026 21.3 6.8 110 130-245 23-139 (150)
236 2xgj_A ATP-dependent RNA helic 42.1 31 0.0011 32.8 5.1 65 151-226 128-198 (1010)
237 4f67_A UPF0176 protein LPG2838 41.7 23 0.00079 27.7 3.6 42 146-187 175-217 (265)
238 3iwt_A 178AA long hypothetical 41.4 95 0.0032 22.2 6.9 53 164-217 41-96 (178)
239 1urh_A 3-mercaptopyruvate sulf 40.6 30 0.001 27.0 4.2 37 151-187 229-266 (280)
240 1w4r_A Thymidine kinase; type 40.1 15 0.00052 27.2 2.2 13 55-67 91-103 (195)
241 1pyo_A Caspase-2; apoptosis, c 39.2 98 0.0033 22.1 6.3 48 152-200 33-94 (167)
242 3h11_B Caspase-8; cell death, 37.6 89 0.003 24.4 6.4 39 161-200 47-85 (271)
243 2fna_A Conserved hypothetical 37.5 42 0.0014 26.8 4.8 38 57-96 139-179 (357)
244 2qby_A CDC6 homolog 1, cell di 37.2 25 0.00087 28.5 3.4 15 56-70 129-143 (386)
245 2h54_A Caspase-1; allosteric s 37.1 1E+02 0.0035 22.3 6.2 47 153-200 44-101 (178)
246 1fnn_A CDC6P, cell division co 36.7 11 0.00037 31.0 1.0 12 56-67 126-137 (389)
247 3ipz_A Monothiol glutaredoxin- 36.2 86 0.0029 20.2 7.8 44 151-194 16-65 (109)
248 3o8b_A HCV NS3 protease/helica 36.2 64 0.0022 29.0 5.9 66 152-228 257-326 (666)
249 2lpm_A Two-component response 36.1 21 0.00073 24.0 2.3 109 132-245 13-121 (123)
250 3hu3_A Transitional endoplasmi 35.9 56 0.0019 28.1 5.4 42 57-98 299-350 (489)
251 3h1t_A Type I site-specific re 35.4 1E+02 0.0035 27.0 7.2 48 151-210 234-282 (590)
252 2qz4_A Paraplegin; AAA+, SPG7, 35.2 52 0.0018 25.0 4.8 12 57-68 100-111 (262)
253 3eie_A Vacuolar protein sortin 35.0 51 0.0017 26.3 4.8 13 57-69 112-124 (322)
254 2xzl_A ATP-dependent helicase 35.0 56 0.0019 30.2 5.5 33 30-67 497-529 (802)
255 1uar_A Rhodanese; sulfurtransf 34.2 54 0.0018 25.5 4.8 36 151-186 232-269 (285)
256 3i2v_A Adenylyltransferase and 34.2 31 0.0011 22.8 3.0 34 154-187 74-114 (127)
257 3euj_A Chromosome partition pr 33.9 39 0.0013 29.0 4.0 37 54-93 413-449 (483)
258 2zpa_A Uncharacterized protein 33.8 54 0.0019 29.5 5.0 36 54-97 254-289 (671)
259 2qv0_A Protein MRKE; structura 33.8 1E+02 0.0035 20.3 6.6 76 132-210 14-91 (143)
260 2zj8_A DNA helicase, putative 33.6 31 0.0011 31.3 3.6 68 152-226 68-144 (720)
261 2eg4_A Probable thiosulfate su 32.9 28 0.00096 26.2 2.8 37 151-187 183-219 (230)
262 2pju_A Propionate catabolism o 32.4 1.6E+02 0.0055 22.2 9.6 115 153-277 13-134 (225)
263 2wjy_A Regulator of nonsense t 32.1 54 0.0018 30.3 4.9 33 31-67 495-527 (800)
264 1rif_A DAR protein, DNA helica 32.1 49 0.0017 25.7 4.2 68 152-226 157-231 (282)
265 3ksm_A ABC-type sugar transpor 31.1 1.7E+02 0.0057 22.0 10.2 38 139-177 174-211 (276)
266 1tvm_A PTS system, galactitol- 31.1 1.1E+02 0.0037 20.1 5.1 60 153-219 22-87 (113)
267 3fho_A ATP-dependent RNA helic 30.7 84 0.0029 27.0 5.7 68 151-226 188-265 (508)
268 3e4c_A Caspase-1; zymogen, inf 30.6 1.4E+02 0.0047 23.8 6.5 47 153-200 61-118 (302)
269 3eod_A Protein HNR; response r 30.2 1.1E+02 0.0038 19.7 6.5 25 154-178 9-33 (130)
270 1qtn_A Caspase-8; apoptosis, d 30.0 1.5E+02 0.0051 21.1 6.7 38 162-200 54-91 (164)
271 3i42_A Response regulator rece 29.9 1.1E+02 0.0038 19.6 5.4 108 133-246 9-122 (127)
272 2l8b_A Protein TRAI, DNA helic 29.7 39 0.0013 24.8 2.8 62 31-95 80-158 (189)
273 1t57_A Conserved protein MTH16 28.9 46 0.0016 24.6 3.1 72 140-212 40-115 (206)
274 3l6u_A ABC-type sugar transpor 28.8 1.9E+02 0.0066 22.0 11.2 38 139-177 182-219 (293)
275 3cf0_A Transitional endoplasmi 28.6 73 0.0025 25.0 4.7 42 57-98 110-164 (301)
276 3g1w_A Sugar ABC transporter; 28.4 2E+02 0.0069 22.0 12.4 38 139-177 174-211 (305)
277 4b3f_X DNA-binding protein smu 27.9 13 0.00044 33.3 0.1 33 32-64 343-375 (646)
278 3gt7_A Sensor protein; structu 27.9 1.4E+02 0.0048 20.1 6.6 39 171-209 46-88 (154)
279 2qp9_X Vacuolar protein sortin 27.9 82 0.0028 25.5 5.0 14 56-69 144-157 (355)
280 3czc_A RMPB; alpha/beta sandwi 27.8 1.3E+02 0.0043 19.6 6.9 80 153-239 19-104 (110)
281 3zyw_A Glutaredoxin-3; metal b 27.6 1.3E+02 0.0044 19.5 7.3 44 151-194 14-63 (111)
282 3eul_A Possible nitrate/nitrit 27.6 1.4E+02 0.0048 20.0 5.9 110 130-245 18-134 (152)
283 3vkw_A Replicase large subunit 27.6 1.4E+02 0.0048 25.3 6.3 57 207-269 371-432 (446)
284 2w58_A DNAI, primosome compone 27.3 29 0.001 25.2 2.0 12 56-67 116-127 (202)
285 2bjv_A PSP operon transcriptio 27.0 54 0.0018 25.1 3.5 25 57-82 102-126 (265)
286 4g81_D Putative hexonate dehyd 26.9 2.1E+02 0.0073 21.9 7.4 59 152-210 33-94 (255)
287 2d7d_A Uvrabc system protein B 26.8 2.3E+02 0.0078 25.4 7.9 101 139-240 45-176 (661)
288 2wci_A Glutaredoxin-4; redox-a 26.6 1.5E+02 0.0052 20.1 7.2 52 141-195 26-83 (135)
289 2c9o_A RUVB-like 1; hexameric 26.4 72 0.0025 27.0 4.5 12 57-68 297-308 (456)
290 2dko_A Caspase-3; low barrier 26.3 1.2E+02 0.004 21.1 4.8 73 162-240 40-115 (146)
291 3h11_A CAsp8 and FADD-like apo 26.3 41 0.0014 26.4 2.7 49 151-200 42-90 (272)
292 1urh_A 3-mercaptopyruvate sulf 25.8 69 0.0024 24.8 4.0 36 151-186 85-122 (280)
293 1e0c_A Rhodanese, sulfurtransf 25.7 40 0.0014 26.1 2.6 36 151-186 222-258 (271)
294 2yan_A Glutaredoxin-3; oxidore 25.5 1.3E+02 0.0045 19.0 7.2 46 152-197 16-67 (105)
295 3b9p_A CG5977-PA, isoform A; A 25.0 1E+02 0.0035 23.9 4.9 13 57-69 115-127 (297)
296 3mwd_B ATP-citrate synthase; A 24.7 1.2E+02 0.0043 24.4 5.3 52 152-203 80-132 (334)
297 3grc_A Sensor protein, kinase; 24.7 1.5E+02 0.0051 19.3 7.6 109 132-245 11-126 (140)
298 2qr3_A Two-component system re 24.6 1.5E+02 0.0051 19.3 5.5 104 134-245 10-125 (140)
299 2ouc_A Dual specificity protei 24.5 41 0.0014 22.7 2.2 36 152-187 83-127 (142)
300 3hv2_A Response regulator/HD d 24.5 1.6E+02 0.0056 19.7 6.2 75 131-210 18-94 (153)
301 1jbw_A Folylpolyglutamate synt 24.3 3.1E+02 0.01 22.8 8.7 32 141-173 393-424 (428)
302 1xwi_A SKD1 protein; VPS4B, AA 24.0 76 0.0026 25.3 4.0 13 56-68 106-118 (322)
303 1w78_A FOLC bifunctional prote 23.7 1.9E+02 0.0066 23.9 6.6 47 58-107 298-345 (422)
304 3rc3_A ATP-dependent RNA helic 23.6 1.2E+02 0.0042 27.2 5.6 53 8-67 343-401 (677)
305 3uk6_A RUVB-like 2; hexameric 23.6 91 0.0031 25.1 4.5 12 57-68 191-202 (368)
306 1qkk_A DCTD, C4-dicarboxylate 23.4 1.7E+02 0.0059 19.5 5.7 99 139-245 15-120 (155)
307 1sxj_A Activator 1 95 kDa subu 23.3 53 0.0018 28.4 3.1 40 56-97 149-190 (516)
308 1wik_A Thioredoxin-like protei 23.3 1.5E+02 0.0052 18.9 7.6 45 152-196 14-64 (109)
309 2rjn_A Response regulator rece 23.3 1.7E+02 0.0059 19.5 6.7 16 172-187 47-62 (154)
310 1lv7_A FTSH; alpha/beta domain 23.3 1.2E+02 0.0041 22.9 4.9 13 57-69 106-118 (257)
311 1rhs_A Sulfur-substituted rhod 23.1 80 0.0027 24.8 3.9 37 151-187 239-276 (296)
312 3lte_A Response regulator; str 23.1 1.6E+02 0.0053 18.9 5.9 61 134-199 13-73 (132)
313 2nn3_C Caspase-1; cysteine pro 22.6 2E+02 0.007 22.9 6.1 49 152-201 60-121 (310)
314 3vfd_A Spastin; ATPase, microt 22.6 1.1E+02 0.0037 25.1 4.8 12 57-68 209-220 (389)
315 3pvs_A Replication-associated 22.5 25 0.00086 29.8 0.8 15 56-70 107-121 (447)
316 3h75_A Periplasmic sugar-bindi 22.3 2.9E+02 0.0099 21.8 14.8 39 139-178 192-230 (350)
317 4gl0_A LMO0810 protein; struct 22.3 55 0.0019 26.0 2.9 49 2-50 28-78 (333)
318 2qxy_A Response regulator; reg 22.2 1.7E+02 0.0058 19.1 6.5 105 133-246 10-121 (142)
319 1mkz_A Molybdenum cofactor bio 22.1 2.2E+02 0.0074 20.2 6.9 54 163-217 28-84 (172)
320 2fp3_A Caspase NC; apoptosis, 22.1 1.9E+02 0.0064 23.2 5.9 48 152-200 61-120 (316)
321 1ixz_A ATP-dependent metallopr 22.0 1.8E+02 0.0061 21.8 5.7 13 56-68 109-121 (254)
322 3m9w_A D-xylose-binding peripl 21.9 2.8E+02 0.0094 21.4 12.2 40 139-178 174-213 (313)
323 1m72_A Caspase-1; caspase, cys 21.9 1.9E+02 0.0066 22.4 5.8 48 153-201 33-93 (272)
324 1e0c_A Rhodanese, sulfurtransf 21.9 1.1E+02 0.0036 23.6 4.4 36 151-186 80-117 (271)
325 3dmq_A RNA polymerase-associat 21.8 70 0.0024 30.2 3.8 53 7-65 526-584 (968)
326 2wem_A Glutaredoxin-related pr 21.7 1.8E+02 0.0061 19.1 8.6 42 153-194 20-68 (118)
327 2ce7_A Cell division protein F 21.5 1.2E+02 0.0042 25.9 4.9 44 56-99 109-165 (476)
328 3d8b_A Fidgetin-like protein 1 21.5 1.1E+02 0.0038 24.8 4.5 14 56-69 177-190 (357)
329 1ojl_A Transcriptional regulat 21.4 49 0.0017 26.2 2.3 24 57-81 98-121 (304)
330 3tb6_A Arabinose metabolism tr 21.4 2.7E+02 0.0092 21.1 12.3 39 140-178 187-226 (298)
331 2va8_A SSO2462, SKI2-type heli 21.3 65 0.0022 29.1 3.4 69 151-226 74-151 (715)
332 2gkg_A Response regulator homo 21.2 1.4E+02 0.0048 18.8 4.4 11 177-187 50-60 (127)
333 1cmk_I CAMP-dependent protein 21.2 26 0.00088 16.3 0.4 8 240-247 9-16 (26)
334 3b2n_A Uncharacterized protein 21.1 1.8E+02 0.006 18.8 5.3 107 133-245 9-122 (133)
335 2hqb_A Transcriptional activat 20.9 2.9E+02 0.01 21.3 12.4 37 141-180 172-208 (296)
336 2xw6_A MGS, methylglyoxal synt 20.8 83 0.0028 21.6 3.0 48 160-211 36-83 (134)
337 3cpe_A Terminase, DNA packagin 20.4 99 0.0034 27.2 4.3 14 56-69 274-287 (592)
338 3hzu_A Thiosulfate sulfurtrans 20.3 1.2E+02 0.0041 24.1 4.4 36 151-186 110-147 (318)
339 2lci_A Protein OR36; structura 20.3 1.7E+02 0.0059 18.4 12.7 104 88-206 2-105 (134)
340 1pjr_A PCRA; DNA repair, DNA r 20.2 4.8E+02 0.016 23.5 10.5 34 151-184 350-383 (724)
341 3ijp_A DHPR, dihydrodipicolina 20.1 2.8E+02 0.0095 21.8 6.4 63 153-218 89-151 (288)
342 3od5_A Caspase-6; caspase doma 20.1 2.8E+02 0.0097 21.6 6.4 48 152-200 21-82 (278)
343 3aay_A Putative thiosulfate su 20.1 1.5E+02 0.005 22.8 4.9 36 151-186 225-262 (277)
344 3ntd_A FAD-dependent pyridine 20.0 63 0.0022 28.1 2.9 37 151-187 523-559 (565)
345 3gx8_A Monothiol glutaredoxin- 20.0 2E+02 0.0067 19.0 8.0 44 151-194 14-66 (121)
346 3f6p_A Transcriptional regulat 20.0 1.8E+02 0.006 18.4 6.4 61 134-199 9-69 (120)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6.1e-47 Score=326.52 Aligned_cols=282 Identities=31% Similarity=0.529 Sum_probs=254.6
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
+++....++++..++|+.+...+...+..+++|+|+||++|.+++.+....+.+++++|+||||++.++++...+..++.
T Consensus 150 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~ 229 (434)
T 2db3_A 150 RKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMT 229 (434)
T ss_dssp HHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHH
T ss_pred HHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHH
Confidence 34566678899999999999888888888999999999999999998888899999999999999999999999999988
Q ss_pred hC--CcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEe
Q 023157 82 LL--PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFV 159 (286)
Q Consensus 82 ~~--~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~ 159 (286)
.. +...|++++|||+++........++.++..+...........+.+.+..+.... +...+..++..... ++||||
T Consensus 230 ~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~~l~~~~~-~~lVF~ 307 (434)
T 2db3_A 230 HVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYA-KRSKLIEILSEQAD-GTIVFV 307 (434)
T ss_dssp CTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGG-HHHHHHHHHHHCCT-TEEEEC
T ss_pred hcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHH-HHHHHHHHHHhCCC-CEEEEE
Confidence 75 567899999999999999999999988888888776666677888887777665 77777777776653 599999
Q ss_pred cchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhh
Q 023157 160 NTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHR 239 (286)
Q Consensus 160 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~ 239 (286)
++++.|+.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|.+..+|+||
T Consensus 308 ~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qr 387 (434)
T 2db3_A 308 ETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHR 387 (434)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHH
T ss_pred eCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCcceEEEEecc-CcHHHHHHHHHHhchhcccCCcchhcc
Q 023157 240 IGRSGRFGRKGVAINFVTR-DDERMLFDIQKFYNVVIEELPSNVADL 285 (286)
Q Consensus 240 ~GR~~R~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l 285 (286)
+||+||.|+.|.+++++++ .+......+.+.+....+++|++|.++
T Consensus 388 iGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 388 IGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp HTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred hcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 9999999999999999994 578889999999999999999999764
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.1e-46 Score=323.44 Aligned_cols=285 Identities=68% Similarity=1.112 Sum_probs=263.1
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
++++...++++..++|+.....+...+..+++|+|+||+++.+.+.+....+.++++||+||+|++.++++...+..++.
T Consensus 126 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~ 205 (410)
T 2j0s_A 126 LALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYR 205 (410)
T ss_dssp HHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHT
T ss_pred HHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHH
Confidence 34566778999999999998888777777899999999999999998888888899999999999999999999999999
Q ss_pred hCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecc
Q 023157 82 LLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNT 161 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~ 161 (286)
.++...|++++|||+++........++.++..+...........+.+.+..+.....+...+..++......++||||++
T Consensus 206 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~ 285 (410)
T 2j0s_A 206 YLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT 285 (410)
T ss_dssp TSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSS
T ss_pred hCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 99889999999999998888877888888887777666667777888888888877788999999988888899999999
Q ss_pred hhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhc
Q 023157 162 RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG 241 (286)
Q Consensus 162 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~G 241 (286)
++.++.+++.|.+.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|++...|+||+|
T Consensus 286 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~G 365 (410)
T 2j0s_A 286 KRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIG 365 (410)
T ss_dssp HHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhccC
Q 023157 242 RSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 286 (286)
Q Consensus 242 R~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 286 (286)
|+||.|+.|.+++++.+.+...+..++++++..++++|..+.+++
T Consensus 366 R~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 410 (410)
T 2j0s_A 366 RSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 410 (410)
T ss_dssp TSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCTTTC
T ss_pred cccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccchhhcC
Confidence 999999999999999999999999999999999999999988765
No 3
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.8e-46 Score=322.45 Aligned_cols=285 Identities=75% Similarity=1.195 Sum_probs=244.7
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHh-CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIF 80 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~ 80 (286)
+++....+..+..++|+.....+...+. .+++|+|+||+++.+.+.+....+.++++||+||+|++.++++...+..++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~ 208 (414)
T 3eiq_A 129 MALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIF 208 (414)
T ss_dssp HHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHH
T ss_pred HHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHH
Confidence 3455667889999999988877766655 678999999999999998888888889999999999999999999999999
Q ss_pred HhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEec
Q 023157 81 QLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVN 160 (286)
Q Consensus 81 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~ 160 (286)
..++++.|++++|||+++........++.++..+...........+.+.+........+...+..++.....+++||||+
T Consensus 209 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~ 288 (414)
T 3eiq_A 209 QKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFIN 288 (414)
T ss_dssp TTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECS
T ss_pred HhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeC
Confidence 99988999999999999999998899998888887777777778888888888888889999999999888899999999
Q ss_pred chhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhh
Q 023157 161 TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRI 240 (286)
Q Consensus 161 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~ 240 (286)
++++++.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+..+|.||+
T Consensus 289 ~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~ 368 (414)
T 3eiq_A 289 TRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI 368 (414)
T ss_dssp CHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHS
T ss_pred CHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhccC
Q 023157 241 GRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 286 (286)
Q Consensus 241 GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 286 (286)
||+||.|+.|.+++++++.+...+..++++++..++++|.++.+||
T Consensus 369 GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 414 (414)
T 3eiq_A 369 GRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADLI 414 (414)
T ss_dssp CCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC------
T ss_pred CcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhcC
Confidence 9999999999999999999999999999999999999999999886
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.2e-45 Score=314.33 Aligned_cols=282 Identities=35% Similarity=0.549 Sum_probs=249.1
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
++....++++..++|+.....+...+..+++|+|+||++|.+.+....+.++++++||+||+|++.++++...+..++..
T Consensus 123 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~ 202 (417)
T 2i4i_A 123 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQ 202 (417)
T ss_dssp HHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTS
T ss_pred HHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHh
Confidence 44556789999999999988888888888999999999999999988888899999999999999999999999998875
Q ss_pred C--Cc--CccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhc-cCcceEE
Q 023157 83 L--PA--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL-AITQSVI 157 (286)
Q Consensus 83 ~--~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~iv 157 (286)
. +. ..+++++|||+++........++..+..+...........+.+.+..+.... +...+..+++.. .+.++||
T Consensus 203 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~lV 281 (417)
T 2i4i_A 203 DTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESD-KRSFLLDLLNATGKDSLTLV 281 (417)
T ss_dssp SSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEEECCGGG-HHHHHHHHHHTCCTTCEEEE
T ss_pred ccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEEEeccHh-HHHHHHHHHHhcCCCCeEEE
Confidence 3 22 5789999999999888888888888887777666666677777777776655 777777888765 5679999
Q ss_pred EecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhh
Q 023157 158 FVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYL 237 (286)
Q Consensus 158 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~ 237 (286)
||+++++++.+++.|++.++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++||++++|.|..+|+
T Consensus 282 f~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~ 361 (417)
T 2i4i_A 282 FVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYV 361 (417)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHH
T ss_pred EECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhcc
Q 023157 238 HRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 285 (286)
Q Consensus 238 Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 285 (286)
||+||+||.|+.|.+++++++.+......+.+.++...+.+|.+|.++
T Consensus 362 Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 409 (417)
T 2i4i_A 362 HRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENM 409 (417)
T ss_dssp HHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 999999999999999999999999999999999999999999998764
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.9e-44 Score=307.51 Aligned_cols=281 Identities=41% Similarity=0.690 Sum_probs=250.3
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
++....++++..++|+.....+...+..+++|+|+||+++.+.+.+....+.++++||+||+|++.+.++...+..++..
T Consensus 111 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~ 190 (400)
T 1s2m_A 111 TLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSF 190 (400)
T ss_dssp HHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTT
T ss_pred HHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHh
Confidence 45566789999999999887777777778999999999999999887788889999999999999888888889999988
Q ss_pred CCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecch
Q 023157 83 LPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTR 162 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~ 162 (286)
++...+++++|||+++.........+..+..+..... .....+.+.+..+.... +...+..++.....+++||||+++
T Consensus 191 ~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-k~~~l~~~~~~~~~~~~lVf~~~~ 268 (400)
T 1s2m_A 191 LPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQ-KLHCLNTLFSKLQINQAIIFCNST 268 (400)
T ss_dssp SCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGG-HHHHHHHHHHHSCCSEEEEECSSH
T ss_pred CCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhh-HHHHHHHHHhhcCCCcEEEEEecH
Confidence 8888999999999999888888888887765544332 34455666666555544 778888888888888999999999
Q ss_pred hhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcc
Q 023157 163 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR 242 (286)
Q Consensus 163 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR 242 (286)
+.++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+..+|.||+||
T Consensus 269 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR 348 (400)
T 1s2m_A 269 NRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGR 348 (400)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCB
T ss_pred HHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhcc
Q 023157 243 SGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 285 (286)
Q Consensus 243 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 285 (286)
+||.|+.|.+++++++.+...+..+++.++..++.+|+++.+.
T Consensus 349 ~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 391 (400)
T 1s2m_A 349 SGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDKS 391 (400)
T ss_dssp SSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCGG
T ss_pred hcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccccccc
Confidence 9999999999999999999999999999999999999887653
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.1e-42 Score=296.79 Aligned_cols=274 Identities=39% Similarity=0.708 Sum_probs=241.3
Q ss_pred CceEEEEEcCcchHHHHHHHh-CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhcc-ccHHHHHHHHHhCCcC
Q 023157 9 GVKVHACVGGTSVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR-GFKDQIYDIFQLLPAK 86 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~-~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~i~~~~~~~ 86 (286)
++++..++|+.........+. ..++|+|+||+++.+.+.+....+.++++||+||+|++.++ ++...+..++...+..
T Consensus 105 ~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~ 184 (391)
T 1xti_A 105 NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 184 (391)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSS
T ss_pred CeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCC
Confidence 789999999988776665554 45899999999999999888888889999999999998874 6778888888888889
Q ss_pred ccEEEEEeecChhHHHHHHHhcCCCeEEEecCCc-cccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhH
Q 023157 87 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDE-LTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKV 165 (286)
Q Consensus 87 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~ 165 (286)
.+++++|||+++........++..+..+...... .....+.+.+..+.... +...+..+++...++++||||++++++
T Consensus 185 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~lvf~~~~~~~ 263 (391)
T 1xti_A 185 KQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVLEFNQVVIFVKSVQRC 263 (391)
T ss_dssp SEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGG-HHHHHHHHHHHSCCSEEEEECSCHHHH
T ss_pred ceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchh-HHHHHHHHHHhcCCCcEEEEeCcHHHH
Confidence 9999999999999888888888888777665443 33455666666655544 778888888888889999999999999
Q ss_pred HHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhccccc
Q 023157 166 DWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGR 245 (286)
Q Consensus 166 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R 245 (286)
+.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|...|.||+||+||
T Consensus 264 ~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R 343 (391)
T 1xti_A 264 IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR 343 (391)
T ss_dssp HHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSS
T ss_pred HHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEEEeccC-cHHHHHHHHHHhchhcccCCcchh
Q 023157 246 FGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPSNVA 283 (286)
Q Consensus 246 ~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 283 (286)
.|+.|.+++++++. +...+..+++.++..++++|..+.
T Consensus 344 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (391)
T 1xti_A 344 FGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 382 (391)
T ss_dssp SCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCCC
T ss_pred CCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcccc
Confidence 99999999999876 557788999999999999997653
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.7e-45 Score=313.17 Aligned_cols=283 Identities=66% Similarity=1.026 Sum_probs=100.9
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
++....++++..++|+.........+. +++|+|+||+++.+.+.+....+.++++||+||+|++.++++...+..++..
T Consensus 111 ~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~ 189 (394)
T 1fuu_A 111 ALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 189 (394)
T ss_dssp HHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHh
Confidence 455567899999999988776665554 5899999999999999888788888999999999999999999999999999
Q ss_pred CCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecch
Q 023157 83 LPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTR 162 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~ 162 (286)
.++..+++++|||+++........++..+..+...........+.+.+..+.....+...+..+++....+++||||+++
T Consensus 190 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~ 269 (394)
T 1fuu_A 190 LPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTR 269 (394)
T ss_dssp SCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC--------------------------------------------
T ss_pred CCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCH
Confidence 98899999999999998888888888888888877766666677777776666666777788888777778999999999
Q ss_pred hhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcc
Q 023157 163 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR 242 (286)
Q Consensus 163 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR 242 (286)
++++.+++.|+..++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+..+|.||+||
T Consensus 270 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR 349 (394)
T 1fuu_A 270 RKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 349 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchhccC
Q 023157 243 SGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 286 (286)
Q Consensus 243 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 286 (286)
+||.|++|.+++++++.+...+..++++++..++.+|..+.++|
T Consensus 350 ~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 393 (394)
T 1fuu_A 350 GGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLL 393 (394)
T ss_dssp --------------------------------------------
T ss_pred ccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhhc
Confidence 99999999999999999999999999999999999999988765
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-41 Score=288.04 Aligned_cols=269 Identities=37% Similarity=0.640 Sum_probs=235.7
Q ss_pred cccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhC
Q 023157 4 LGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL 83 (286)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~ 83 (286)
+....++++..++|+.....+...+. +++|+|+||+++.+.+......+.++++||+||+|.+.++++...+..++...
T Consensus 97 ~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~ 175 (367)
T 1hv8_A 97 LKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNAC 175 (367)
T ss_dssp HHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTS
T ss_pred HhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhC
Confidence 34456788999999988776666554 68999999999999998888888899999999999999999999999999998
Q ss_pred CcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchh
Q 023157 84 PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRR 163 (286)
Q Consensus 84 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~ 163 (286)
+...+++++|||+++........+...+..+..... ..+.+.+....... +...+..+++ ..+.++||||++++
T Consensus 176 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~l~~~l~-~~~~~~lvf~~~~~ 249 (367)
T 1hv8_A 176 NKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNENE-RFEALCRLLK-NKEFYGLVFCKTKR 249 (367)
T ss_dssp CSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS----SSSEEEEEECCGGG-HHHHHHHHHC-STTCCEEEECSSHH
T ss_pred CCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC----CCceEEEEEeChHH-HHHHHHHHHh-cCCCcEEEEECCHH
Confidence 889999999999999888888887776554443322 34556666555544 7777777776 45579999999999
Q ss_pred hHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhccc
Q 023157 164 KVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRS 243 (286)
Q Consensus 164 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~ 243 (286)
+++.+++.|++.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.|..+|.||+||+
T Consensus 250 ~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~ 329 (367)
T 1hv8_A 250 DTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRT 329 (367)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTT
T ss_pred HHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCC
Q 023157 244 GRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 279 (286)
Q Consensus 244 ~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (286)
||.|++|.+++++++.+...+..+++.++..+++++
T Consensus 330 ~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 365 (367)
T 1hv8_A 330 GRAGKKGKAISIINRREYKKLRYIERAMKLKIKKLK 365 (367)
T ss_dssp CCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCBC
T ss_pred ccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCceec
Confidence 999999999999999999999999999999888764
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.3e-41 Score=290.48 Aligned_cols=274 Identities=40% Similarity=0.729 Sum_probs=240.2
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhc-cccHHHHHHHHH
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQ 81 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~ 81 (286)
++.+..++.+...+|+...... ..+++|+|+||+++.+.+.+....+.++++||+||+|++.+ .++...+..+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~ 172 (395)
T 3pey_A 97 EMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKR 172 (395)
T ss_dssp HHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHH
T ss_pred HHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHH
Confidence 3445566777777776443221 23689999999999999988888889999999999999887 677888888999
Q ss_pred hCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecc
Q 023157 82 LLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNT 161 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~ 161 (286)
..+.+.|++++|||+++........+...+..+...........+.+.+..+.....+...+..++....++++||||++
T Consensus 173 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~ 252 (395)
T 3pey_A 173 FLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVAT 252 (395)
T ss_dssp TSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSC
T ss_pred hCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 88889999999999999888888888888887777777777777888888888877788999999988888999999999
Q ss_pred hhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCC------Ccch
Q 023157 162 RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------QPEN 235 (286)
Q Consensus 162 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~------s~~~ 235 (286)
+.+++.+++.|++.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|. |..+
T Consensus 253 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~ 332 (395)
T 3pey_A 253 KKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPAT 332 (395)
T ss_dssp HHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred hhhhhcccccCCCcceEEEEeccC-cHHHHHHHHHHhc-hhcccCCc
Q 023157 236 YLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYN-VVIEELPS 280 (286)
Q Consensus 236 ~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~ 280 (286)
|+||+||+||.|+.|.+++++... +...+..+++.++ ..+..+|.
T Consensus 333 ~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 379 (395)
T 3pey_A 333 YIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVPT 379 (395)
T ss_dssp HHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECCS
T ss_pred hhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCCh
Confidence 999999999999999999999864 5667778888887 66666664
No 10
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1e-41 Score=292.68 Aligned_cols=270 Identities=40% Similarity=0.715 Sum_probs=237.6
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhc-CCCCCCCccEEEEehhhHhhc-cccHHHHHHHHHhCCcC
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQLLPAK 86 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~ 86 (286)
+.++....|+....... ...++|+|+||+++.+.+.+ ....+.++++||+||+|++.+ .++...+..+...++.+
T Consensus 124 ~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~ 200 (412)
T 3fht_A 124 ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 200 (412)
T ss_dssp TCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTT
T ss_pred cceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCC
Confidence 56777777765543321 33579999999999998865 556678899999999999886 67788888888888889
Q ss_pred ccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHH
Q 023157 87 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVD 166 (286)
Q Consensus 87 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~ 166 (286)
.|++++|||+++........++..+..+...........+.+.+........+...+..++....+.++||||+++.+++
T Consensus 201 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~ 280 (412)
T 3fht_A 201 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTAS 280 (412)
T ss_dssp CEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHH
T ss_pred ceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHH
Confidence 99999999999999899999998888887777777777888888888888889999999999888899999999999999
Q ss_pred HHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCC------Ccchhhhhh
Q 023157 167 WLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------QPENYLHRI 240 (286)
Q Consensus 167 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~------s~~~~~Q~~ 240 (286)
.+++.|...++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|. +..+|+||+
T Consensus 281 ~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~ 360 (412)
T 3fht_A 281 WLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 360 (412)
T ss_dssp HHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHH
T ss_pred HHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999994 668999999
Q ss_pred cccccCCCcceEEEEeccCc-HHHHHHHHHHhchhcccCCcc
Q 023157 241 GRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPSN 281 (286)
Q Consensus 241 GR~~R~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 281 (286)
||+||.|..|.+++++++.+ ...+..+++.++..++.++.+
T Consensus 361 GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 402 (412)
T 3fht_A 361 GRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 402 (412)
T ss_dssp TTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC---
T ss_pred CcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCc
Confidence 99999999999999998764 888899999999998888754
No 11
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=9e-40 Score=273.32 Aligned_cols=259 Identities=30% Similarity=0.524 Sum_probs=217.6
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
++....+.++..++|+.....+...+.. ++|+|+||+++.+.+.+....+.++++||+||+|++.++++...+..++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~ 156 (337)
T 2z0m_A 78 DIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQ 156 (337)
T ss_dssp HHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhh
Confidence 4556778999999999887776666544 899999999999998887777888999999999999999999999999999
Q ss_pred CCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecch
Q 023157 83 LPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTR 162 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~ 162 (286)
.+...+++++|||+++........+...+..+... .....+.+.+........ .....+....+.++||||+++
T Consensus 157 ~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~lvf~~~~ 230 (337)
T 2z0m_A 157 TSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWR---SKVQALRENKDKGVIVFVRTR 230 (337)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSH---HHHHHHHTCCCSSEEEECSCH
T ss_pred CCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHH---HHHHHHHhCCCCcEEEEEcCH
Confidence 98889999999999998888888888776655322 333445555555554331 122455556778999999999
Q ss_pred hhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcc
Q 023157 163 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGR 242 (286)
Q Consensus 163 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR 242 (286)
++++.+++.|. .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.|..+|.||+||
T Consensus 231 ~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR 306 (337)
T 2z0m_A 231 NRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGR 306 (337)
T ss_dssp HHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCc
Confidence 99999999985 68899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcceEEEEeccCcHHHHHHHHHHhch
Q 023157 243 SGRFGRKGVAINFVTRDDERMLFDIQKFYNV 273 (286)
Q Consensus 243 ~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 273 (286)
+||.|++|.+++++. .+...+..+++.++.
T Consensus 307 ~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 307 TGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp BCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred cccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 999999999999999 888888888776653
No 12
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.1e-41 Score=296.19 Aligned_cols=274 Identities=41% Similarity=0.728 Sum_probs=204.4
Q ss_pred cccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhc-cccHHHHHHHHHh
Q 023157 4 LGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQL 82 (286)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~ 82 (286)
+....+..+....++..... ...+++|+|+||+++.+.+......+.++++||+||+|++.+ .++...+..+...
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~ 287 (508)
T 3fho_A 212 MGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHL 287 (508)
T ss_dssp HSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHH
T ss_pred hCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHh
Confidence 33344455555444432221 123689999999999999988888889999999999999887 5788899999999
Q ss_pred CCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecch
Q 023157 83 LPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTR 162 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~ 162 (286)
++.+.|++++|||+++........+...+..+...........+.+.+........+...+..++....++++||||+++
T Consensus 288 ~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~ 367 (508)
T 3fho_A 288 LPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKK 367 (508)
T ss_dssp SCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSST
T ss_pred CCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCH
Confidence 98899999999999998888888888888877777776777777888888777777888899999888889999999999
Q ss_pred hhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCC------CCcchh
Q 023157 163 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLP------TQPENY 236 (286)
Q Consensus 163 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~------~s~~~~ 236 (286)
++|+.+++.|.+.+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++| .|..+|
T Consensus 368 ~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~ 447 (508)
T 3fho_A 368 DTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTY 447 (508)
T ss_dssp TTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHH
T ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 789999
Q ss_pred hhhhcccccCCCcceEEEEecc-CcHHHHHHHHHHhchhcccCCcc
Q 023157 237 LHRIGRSGRFGRKGVAINFVTR-DDERMLFDIQKFYNVVIEELPSN 281 (286)
Q Consensus 237 ~Q~~GR~~R~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 281 (286)
+||+||+||.|+.|.+++++.. .+...+..++++++..++++|..
T Consensus 448 ~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 448 LHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp HHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred HHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 9999999999999999999984 56788899999999999988864
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.4e-39 Score=289.96 Aligned_cols=268 Identities=28% Similarity=0.467 Sum_probs=219.3
Q ss_pred CceEEEEEcCcchHHHHHHH-hCCCcEEEeCcHHHHHHHhcC-CCCCCCccEEEEehhhHhhccccHHHHHHHHHhCC--
Q 023157 9 GVKVHACVGGTSVREDQRIL-QAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-- 84 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~-~~~~~iii~Tp~~l~~~~~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~-- 84 (286)
+..+..++|+.....+...+ ..+++|+|+||+++.+.+.+. ...++++++||+||||++.++++...+..+...++
T Consensus 178 ~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~ 257 (563)
T 3i5x_A 178 KYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEK 257 (563)
T ss_dssp TSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHH
T ss_pred ceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhc
Confidence 46688889998877666555 457999999999999888753 34567789999999999999999988887766542
Q ss_pred -----cCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCc----cccccceeEEEEccchhhHH----HHHHHHHhh-c
Q 023157 85 -----AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE----LTLEGIKQFYVNVEKEEWKL----ETLCDLYET-L 150 (286)
Q Consensus 85 -----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~----~~l~~~~~~-~ 150 (286)
.+.|++++|||+++........++..+..+...... .....+.+.+........+. ..+...+.. .
T Consensus 258 ~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 337 (563)
T 3i5x_A 258 NSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERD 337 (563)
T ss_dssp CSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTT
T ss_pred cccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcC
Confidence 367899999999998888888888877666554322 22334455555444433222 223233332 4
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC---CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEc
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR---DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 227 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~ 227 (286)
.+.++||||+++..++.+++.|++. ++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 417 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQI 417 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEE
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEE
Confidence 5679999999999999999999876 8899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcc
Q 023157 228 DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 276 (286)
Q Consensus 228 ~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (286)
++|.+..+|+||+||+||.|+.|.+++++.+.+...+..+++..+..++
T Consensus 418 ~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 466 (563)
T 3i5x_A 418 GVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 466 (563)
T ss_dssp SCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred CCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999999888766554
No 14
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.6e-39 Score=289.95 Aligned_cols=269 Identities=28% Similarity=0.459 Sum_probs=220.8
Q ss_pred cCceEEEEEcCcchHHHHHHH-hCCCcEEEeCcHHHHHHHhcC-CCCCCCccEEEEehhhHhhccccHHHHHHHHHhCC-
Q 023157 8 LGVKVHACVGGTSVREDQRIL-QAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP- 84 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~-~~~~~iii~Tp~~l~~~~~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~- 84 (286)
....+..+.|+.....+...+ ..+++|+|+||+++.+.+.+. ...+..+++||+||||++.+++|...+..+...++
T Consensus 126 ~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~ 205 (579)
T 3sqw_A 126 KKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNE 205 (579)
T ss_dssp TTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHH
T ss_pred cceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhh
Confidence 346788889998877766655 347999999999999888753 34677789999999999999999988887776653
Q ss_pred ------cCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCc----cccccceeEEEEccchhh-H---HHHHHHHHhh-
Q 023157 85 ------AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDE----LTLEGIKQFYVNVEKEEW-K---LETLCDLYET- 149 (286)
Q Consensus 85 ------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~-~---~~~l~~~~~~- 149 (286)
...|++++|||+++........++..+..+...... .....+.+.....+.... . ...+...+..
T Consensus 206 ~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (579)
T 3sqw_A 206 KNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKER 285 (579)
T ss_dssp HCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT
T ss_pred hhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhc
Confidence 267899999999998888888888887666554322 223345555555444322 2 2233333332
Q ss_pred ccCcceEEEecchhhHHHHHHHHhcC---CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEE
Q 023157 150 LAITQSVIFVNTRRKVDWLTDKMRSR---DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 226 (286)
Q Consensus 150 ~~~~~~ivf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~ 226 (286)
..+.++||||+++..++.+++.|++. ++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~ 365 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 365 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE
Confidence 45679999999999999999999876 889999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcc
Q 023157 227 YDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIE 276 (286)
Q Consensus 227 ~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (286)
+++|.+...|+||+||+||.|+.|.+++++.+.+...+..+++..+..+.
T Consensus 366 ~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 415 (579)
T 3sqw_A 366 IGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 415 (579)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred cCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999887766554
No 15
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.6e-41 Score=296.84 Aligned_cols=270 Identities=40% Similarity=0.715 Sum_probs=85.9
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhc-CCCCCCCccEEEEehhhHhhc-cccHHHHHHHHHhCCcC
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIFQLLPAK 86 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~~~~~~~ 86 (286)
+..+....++....... ...++|+|+||+++.+++.+ ..+.+.++++||+||+|.+.+ .++...+..+...++.+
T Consensus 191 ~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~ 267 (479)
T 3fmp_B 191 ELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRN 267 (479)
T ss_dssp TCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTT
T ss_pred CceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCcc
Confidence 45666666655433221 23578999999999999866 456778899999999999886 57778888888888889
Q ss_pred ccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHH
Q 023157 87 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVD 166 (286)
Q Consensus 87 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~ 166 (286)
.|++++|||+++........++..+..+...........+.+.+..+.....+...+..++......++||||+++..++
T Consensus 268 ~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~ 347 (479)
T 3fmp_B 268 CQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTAS 347 (479)
T ss_dssp SEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------------------------------------------
T ss_pred ceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHH
Confidence 99999999999999899989988888888877777777788888877776778888888888777889999999999999
Q ss_pred HHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCC------Ccchhhhhh
Q 023157 167 WLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT------QPENYLHRI 240 (286)
Q Consensus 167 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~------s~~~~~Q~~ 240 (286)
.+++.|...+..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++|+|. +..+|+||+
T Consensus 348 ~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~ 427 (479)
T 3fmp_B 348 WLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 427 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999994 668999999
Q ss_pred cccccCCCcceEEEEeccCc-HHHHHHHHHHhchhcccCCcc
Q 023157 241 GRSGRFGRKGVAINFVTRDD-ERMLFDIQKFYNVVIEELPSN 281 (286)
Q Consensus 241 GR~~R~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 281 (286)
||+||.|..|.+++++++.+ ...+..++++++..++.++.+
T Consensus 428 GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 469 (479)
T 3fmp_B 428 GRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTD 469 (479)
T ss_dssp ------------------------------------------
T ss_pred cccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCCc
Confidence 99999999999999998765 788889999999888887654
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=3.6e-38 Score=279.61 Aligned_cols=257 Identities=16% Similarity=0.216 Sum_probs=201.4
Q ss_pred cCceEEEEEcCcchHHHHHHH------hCCCcEEEeCcHHHHH------HHhcCCCCCCCccEEEEehhhHhhccc--cH
Q 023157 8 LGVKVHACVGGTSVREDQRIL------QAGVHVVVGTPGRVFD------MLRRQSLRPDYIKMFVLDEADEMLSRG--FK 73 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~------~~~~~iii~Tp~~l~~------~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~ 73 (286)
+|+++..++|+....+....+ ...++|+|+||++|.. .+. ....+.++++|||||||++.+|+ |.
T Consensus 107 ~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~-~~~~~~~i~~iViDEAH~is~~g~dfr 185 (591)
T 2v1x_A 107 LGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE-KAYEARRFTRIAVDEVHCCSQWGHDFR 185 (591)
T ss_dssp HTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH-HHHHTTCEEEEEEETGGGGSTTCTTCC
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH-hhhhccCCcEEEEECcccccccccccH
Confidence 488999999998876554432 3579999999998742 222 23345678999999999999887 55
Q ss_pred HHHHH---HHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccc-hhhHHHHHHHHHhh
Q 023157 74 DQIYD---IFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK-EEWKLETLCDLYET 149 (286)
Q Consensus 74 ~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~l~~~~~~ 149 (286)
+.+.. +...+ ++.+++++|||+++.....+..++..+....... ....+++......... ...+...+..++..
T Consensus 186 ~~~~~l~~l~~~~-~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~ 263 (591)
T 2v1x_A 186 PDYKALGILKRQF-PNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPSNTEDFIEDIVKLING 263 (591)
T ss_dssp GGGGGGGHHHHHC-TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCCcHHHHHHHHHHHHHH
Confidence 55443 33444 4788999999999988777776665543333322 2333444443333322 23355666666653
Q ss_pred -ccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEcc
Q 023157 150 -LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD 228 (286)
Q Consensus 150 -~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~ 228 (286)
..+.++||||++++.++.+++.|+..|+.+..+|++|+.++|..+++.|.+|+.+|||||+++++|+|+|++++||+++
T Consensus 264 ~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~ 343 (591)
T 2v1x_A 264 RYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHS 343 (591)
T ss_dssp TTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESS
T ss_pred hccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeC
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHH
Q 023157 229 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 267 (286)
Q Consensus 229 ~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 267 (286)
+|.|...|+||+||+||.|.+|.+++++++.|......+
T Consensus 344 ~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 344 MSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 999999999999999999999999999988776655444
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.4e-37 Score=273.15 Aligned_cols=254 Identities=19% Similarity=0.279 Sum_probs=198.6
Q ss_pred cCceEEEEEcCcchHHHHH----HHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccc--cHHHHH---H
Q 023157 8 LGVKVHACVGGTSVREDQR----ILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG--FKDQIY---D 78 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~----~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~~~~~---~ 78 (286)
+|+++..++|+....+... ...+.++|+++||+++........+...++++||+||+|++.+|+ +.+.+. .
T Consensus 88 ~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~ 167 (523)
T 1oyw_A 88 NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQ 167 (523)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGG
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHH
Confidence 5888999999887655433 334579999999999853222222334678999999999998876 555444 3
Q ss_pred HHHhCCcCccEEEEEeecChhHHHHHHHhcC--CCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceE
Q 023157 79 IFQLLPAKVQVGVFSATMPPEALEITRKFMN--KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSV 156 (286)
Q Consensus 79 i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 156 (286)
+...++ +.+++++|||+++.....+...+. .+... ... ...+++...... ...+...+..++...++.++|
T Consensus 168 l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~--~~r~~l~~~v~~---~~~~~~~l~~~l~~~~~~~~I 240 (523)
T 1oyw_A 168 LRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FDRPNIRYMLME---KFKPLDQLMRYVQEQRGKSGI 240 (523)
T ss_dssp HHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECC--CCCTTEEEEEEE---CSSHHHHHHHHHHHTTTCCEE
T ss_pred HHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCC--CCCCceEEEEEe---CCCHHHHHHHHHHhcCCCcEE
Confidence 445554 688999999999876654444332 33322 222 223344333322 233666777777777778999
Q ss_pred EEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchh
Q 023157 157 IFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY 236 (286)
Q Consensus 157 vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~ 236 (286)
|||++++.++.+++.|+..|+.+..+||+++.++|..+++.|.+|+.+|||||+++++|+|+|++++||++++|.|...|
T Consensus 241 Vf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y 320 (523)
T 1oyw_A 241 IYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESY 320 (523)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHH
T ss_pred EEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCcceEEEEeccCcHHHHHHHH
Q 023157 237 LHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ 268 (286)
Q Consensus 237 ~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~ 268 (286)
+||+||+||.|.+|.+++++++.|......+.
T Consensus 321 ~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 321 YQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp HHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred HHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999888766655544
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.9e-37 Score=264.39 Aligned_cols=250 Identities=22% Similarity=0.300 Sum_probs=193.2
Q ss_pred ccccccCceEEEEEcCcch---HHHHHHHhC-CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhc---------
Q 023157 3 ALGDYLGVKVHACVGGTSV---REDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS--------- 69 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~---~~~~~~~~~-~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~--------- 69 (286)
++.+ .++++..++|+.+. ..+...+.. .++|+|+||+++.+.+.. +.+.++++||+||+|++..
T Consensus 86 ~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 86 KLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp HHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred HHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHH
Confidence 3444 78999999999987 334444444 499999999999887764 5566889999999998764
Q ss_pred --cccHHH-HHHHHHhCC-----------cCccEEEEEeec-ChhHH-HHHHHhcCCCeEEEecCCccccccceeEEEEc
Q 023157 70 --RGFKDQ-IYDIFQLLP-----------AKVQVGVFSATM-PPEAL-EITRKFMNKPVRILVKRDELTLEGIKQFYVNV 133 (286)
Q Consensus 70 --~~~~~~-~~~i~~~~~-----------~~~~~i~~SAT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (286)
.++... +..++..++ .+.|++++|||+ ++... .....+.. +...........+.+.+...
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~ 238 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS 238 (414)
T ss_dssp HHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEESS
T ss_pred hhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeecc
Confidence 445555 667777655 678999999994 43332 22223222 11222333445566666655
Q ss_pred cchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeE-EecCCCCHHHHHHHHHHhhcCCCcEEEE----
Q 023157 134 EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVS-ATHGDMDQNTRDIIMREFRSGSSRVLIT---- 208 (286)
Q Consensus 134 ~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vlv~---- 208 (286)
+ +...+..+++. .+.++||||+++.+++.+++.|+..++.+. .+||. +| + ++.|++|+.+||||
T Consensus 239 ~----~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r-~-~~~f~~g~~~vLvat~s~ 307 (414)
T 3oiy_A 239 R----SKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EK-N-FEDFKVGKINILIGVQAY 307 (414)
T ss_dssp C----CHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HH-H-HHHHHTTSCSEEEEECCT
T ss_pred C----HHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----ch-H-HHHHhCCCCeEEEEecCc
Confidence 3 44445555555 348999999999999999999999999998 88984 33 3 99999999999999
Q ss_pred ecCCccCCCCCC-CcEEEEccCC--CCcchhhhhhcccccCC----CcceEEEEeccCcHHHHHHHHHHhc
Q 023157 209 TDLLARGIDVQQ-VSLVINYDLP--TQPENYLHRIGRSGRFG----RKGVAINFVTRDDERMLFDIQKFYN 272 (286)
Q Consensus 209 T~~~~~Gidi~~-~~~vi~~~~~--~s~~~~~Q~~GR~~R~~----~~g~~~~~~~~~~~~~~~~~~~~~~ 272 (286)
|+++++|+|+|+ +++||++++| .+..+|+||+||+||.| ..|.+++++ .+...+..+++.++
T Consensus 308 T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 308 YGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp TCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred CchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999987 468888888 77788888888888
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.2e-35 Score=264.37 Aligned_cols=258 Identities=18% Similarity=0.239 Sum_probs=137.8
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCC-CCCCccEEEEehhhHhhccccHHHH-HHHH
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDEADEMLSRGFKDQI-YDIF 80 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~~~~~-~~i~ 80 (286)
++....++++..++|+.....+...+..+++|+|+||+++.+.+....+ .+.++++||+||+|++.+++....+ ...+
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 156 (556)
T 4a2p_A 77 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 156 (556)
T ss_dssp HHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHH
T ss_pred HHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHH
Confidence 3444568999999999987777766667799999999999999988777 7888999999999999877643332 2222
Q ss_pred Hh----CCcCccEEEEEeecChh-----------HHHHHH------------------HhcCCCeEEEecCCccccccce
Q 023157 81 QL----LPAKVQVGVFSATMPPE-----------ALEITR------------------KFMNKPVRILVKRDELTLEGIK 127 (286)
Q Consensus 81 ~~----~~~~~~~i~~SAT~~~~-----------~~~~~~------------------~~~~~~~~~~~~~~~~~~~~i~ 127 (286)
.. ..+.++++++||||... ...+.. .+...+................
T Consensus 157 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (556)
T 4a2p_A 157 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 236 (556)
T ss_dssp HHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHH
T ss_pred HhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHH
Confidence 22 13468899999999531 111111 1111111111100000000000
Q ss_pred -------------------------------------eEEE---------------------------------------
Q 023157 128 -------------------------------------QFYV--------------------------------------- 131 (286)
Q Consensus 128 -------------------------------------~~~~--------------------------------------- 131 (286)
.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 316 (556)
T 4a2p_A 237 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 316 (556)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000
Q ss_pred -------------------------------------------------EccchhhHHHHHHHHHhh----ccCcceEEE
Q 023157 132 -------------------------------------------------NVEKEEWKLETLCDLYET----LAITQSVIF 158 (286)
Q Consensus 132 -------------------------------------------------~~~~~~~~~~~l~~~~~~----~~~~~~ivf 158 (286)
.......|...+..++.. .++.++|||
T Consensus 317 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF 396 (556)
T 4a2p_A 317 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 396 (556)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEE
Confidence 000001244444445543 456899999
Q ss_pred ecchhhHHHHHHHHhcC------------CCeeEEecCCCCHHHHHHHHHHhhc-CCCcEEEEecCCccCCCCCCCcEEE
Q 023157 159 VNTRRKVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVI 225 (286)
Q Consensus 159 ~~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~T~~~~~Gidi~~~~~vi 225 (286)
|+++.+++.+++.|++. |.....+||+++..+|..+++.|++ |+.+|||||+++++|+|+|++++||
T Consensus 397 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI 476 (556)
T 4a2p_A 397 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 476 (556)
T ss_dssp ESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEE
T ss_pred EccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEE
Confidence 99999999999999875 5566677888999999999999999 9999999999999999999999999
Q ss_pred EccCCCCcchhhhhhcccccCCCcceEEEEeccCcHH
Q 023157 226 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 262 (286)
Q Consensus 226 ~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 262 (286)
++|+|+|+..|+||+|| ||. .+|.+++++...+..
T Consensus 477 ~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 477 LYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp EETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred EeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 99999999999999999 998 789999999887543
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.1e-35 Score=271.07 Aligned_cols=276 Identities=22% Similarity=0.285 Sum_probs=165.3
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCC-CCCCccEEEEehhhHhhccccH-HHHHHHH
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDEADEMLSRGFK-DQIYDIF 80 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~~-~~~~~i~ 80 (286)
++....++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++||+||||++.+.... ..+..++
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l 162 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 162 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHH
Confidence 3445568999999999877666666666799999999999999988766 6888999999999998765422 2222233
Q ss_pred Hh-----CCcCccEEEEEeecC-------hhHHHHHHH----------------------hcCCCeEEEecCCcccc---
Q 023157 81 QL-----LPAKVQVGVFSATMP-------PEALEITRK----------------------FMNKPVRILVKRDELTL--- 123 (286)
Q Consensus 81 ~~-----~~~~~~~i~~SAT~~-------~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~--- 123 (286)
.. ....+++++|||||. .+....+.. +...|............
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~f 242 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF 242 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHH
T ss_pred HHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChH
Confidence 22 235689999999997 221111111 11112111100000000
Q ss_pred --------------------------------------------------------------------------------
Q 023157 124 -------------------------------------------------------------------------------- 123 (286)
Q Consensus 124 -------------------------------------------------------------------------------- 123 (286)
T Consensus 243 s~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 322 (696)
T 2ykg_A 243 KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDA 322 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHH
Confidence
Q ss_pred ----------------------------ccceeEEEE---------------ccchhhHHHHHHHHHhhc----cCcceE
Q 023157 124 ----------------------------EGIKQFYVN---------------VEKEEWKLETLCDLYETL----AITQSV 156 (286)
Q Consensus 124 ----------------------------~~i~~~~~~---------------~~~~~~~~~~l~~~~~~~----~~~~~i 156 (286)
..+.+.+.. ......+...+..++... ++.++|
T Consensus 323 ~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~I 402 (696)
T 2ykg_A 323 LIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITI 402 (696)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEE
T ss_pred HhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEE
Confidence 000000000 001223566666666654 567999
Q ss_pred EEecchhhHHHHHHHHhcCC----CeeEEe--------cCCCCHHHHHHHHHHhhc-CCCcEEEEecCCccCCCCCCCcE
Q 023157 157 IFVNTRRKVDWLTDKMRSRD----HTVSAT--------HGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSL 223 (286)
Q Consensus 157 vf~~~~~~~~~l~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~~-~~~~vlv~T~~~~~Gidi~~~~~ 223 (286)
|||+++.+++.+++.|+..+ +.+..+ |++++.++|.++++.|++ |+.+|||||+++++|+|+|++++
T Consensus 403 IF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~ 482 (696)
T 2ykg_A 403 LFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNL 482 (696)
T ss_dssp EECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSE
T ss_pred EEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCE
Confidence 99999999999999999887 778877 569999999999999998 99999999999999999999999
Q ss_pred EEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHH----HHHhchhcccCCc
Q 023157 224 VINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI----QKFYNVVIEELPS 280 (286)
Q Consensus 224 vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 280 (286)
||++|+|.|+.+|+||+|| ||. .+|.++.+++..+......+ ++.++..+.+++.
T Consensus 483 VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 541 (696)
T 2ykg_A 483 VILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQT 541 (696)
T ss_dssp EEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999 997 77999999988776555555 5566665555544
No 21
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.4e-34 Score=248.97 Aligned_cols=251 Identities=19% Similarity=0.256 Sum_probs=185.5
Q ss_pred ceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccE
Q 023157 10 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 89 (286)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 89 (286)
.++..++|+.........+ .+++|+|+||+.+.+.+....+.+.++++||+||+|++.+......+...+....+..++
T Consensus 81 ~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 3899999998876554443 357999999999999998877888899999999999987664455555555555668899
Q ss_pred EEEEeecChhH---HHHHHHhcCCCeEEEecCCcc-----ccccceeEEEEc----------------------------
Q 023157 90 GVFSATMPPEA---LEITRKFMNKPVRILVKRDEL-----TLEGIKQFYVNV---------------------------- 133 (286)
Q Consensus 90 i~~SAT~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~---------------------------- 133 (286)
+++||||..+. ..+...+.............. ............
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999997432 222222211111110000000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 023157 134 -------------------------------------------------------------------------------- 133 (286)
Q Consensus 134 -------------------------------------------------------------------------------- 133 (286)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence
Q ss_pred -------------------cchhhHHHHHHHHHhh----ccCcceEEEecchhhHHHHHHHHhcCCCeeEEecC------
Q 023157 134 -------------------EKEEWKLETLCDLYET----LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHG------ 184 (286)
Q Consensus 134 -------------------~~~~~~~~~l~~~~~~----~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~------ 184 (286)
.....|...+..++.. .++.++||||+++..++.+++.|+..++.+..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccc
Confidence 0112244555566655 46789999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHH
Q 023157 185 --DMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 262 (286)
Q Consensus 185 --~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 262 (286)
+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+++..|.||+||+||.|. |.++.++.+.+.+
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred cccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 9999999887543
No 22
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.5e-34 Score=257.11 Aligned_cols=272 Identities=19% Similarity=0.237 Sum_probs=170.1
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCC-CCCCccEEEEehhhHhhcccc-HHHHHHHH
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDEADEMLSRGF-KDQIYDIF 80 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~-~~~~~~i~ 80 (286)
++....++++..++|+.....+...+..+++|+|+||+++.+.+....+ .+.++++||+||||++.+.+. ...+...+
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 153 (555)
T 3tbk_A 74 RYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYL 153 (555)
T ss_dssp HHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHH
T ss_pred HHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHH
Confidence 3444568999999999987777666666799999999999999988776 688899999999999887642 23333333
Q ss_pred HhC-----CcCccEEEEEeecChhH-------HHH---HHHhcCCCeEEEecCCc-------cccccceeEEEE------
Q 023157 81 QLL-----PAKVQVGVFSATMPPEA-------LEI---TRKFMNKPVRILVKRDE-------LTLEGIKQFYVN------ 132 (286)
Q Consensus 81 ~~~-----~~~~~~i~~SAT~~~~~-------~~~---~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~------ 132 (286)
... ...++++++|||+.... ... ....+... .+...... ...+........
T Consensus 154 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T 3tbk_A 154 DHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDAS-VIATVRDNVAELEQVVYKPQKISRKVASRTSNT 232 (555)
T ss_dssp HHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCS-EEECCCSCHHHHHTTCCCCCEEEEECCCCSCCH
T ss_pred HhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCe-eeeccccCHHHHHhhcCCCceEEEEecCcccCh
Confidence 321 24578999999996421 111 11111111 11110000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 023157 133 -------------------------------------------------------------------------------- 132 (286)
Q Consensus 133 -------------------------------------------------------------------------------- 132 (286)
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 312 (555)
T 3tbk_A 233 FKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYND 312 (555)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------------------ccchhhHHHHHHHHHhh----ccCcce
Q 023157 133 -----------------------------------------------------VEKEEWKLETLCDLYET----LAITQS 155 (286)
Q Consensus 133 -----------------------------------------------------~~~~~~~~~~l~~~~~~----~~~~~~ 155 (286)
......|...+..++.. .++.++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~ 392 (555)
T 3tbk_A 313 ALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKT 392 (555)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceE
Confidence 00011244444444443 356899
Q ss_pred EEEecchhhHHHHHHHHhcCC------------CeeEEecCCCCHHHHHHHHHHhhc-CCCcEEEEecCCccCCCCCCCc
Q 023157 156 VIFVNTRRKVDWLTDKMRSRD------------HTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVS 222 (286)
Q Consensus 156 ivf~~~~~~~~~l~~~l~~~~------------~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~T~~~~~Gidi~~~~ 222 (286)
||||+++.+++.+++.|+..+ .+...+||+|+..+|..+++.|++ |+.+|||||+++++|+|+|+++
T Consensus 393 lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~ 472 (555)
T 3tbk_A 393 ILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECN 472 (555)
T ss_dssp EEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCS
T ss_pred EEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCC
Confidence 999999999999999998763 355566679999999999999999 9999999999999999999999
Q ss_pred EEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHH----HHHhchhccc
Q 023157 223 LVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI----QKFYNVVIEE 277 (286)
Q Consensus 223 ~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 277 (286)
+||++|+|+|+..|+||+|| ||. .+|.+++++.+.+......+ ++.++..+.+
T Consensus 473 ~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~ 529 (555)
T 3tbk_A 473 LVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKANMIKEKIMNESILR 529 (555)
T ss_dssp EEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHHhhHHHHHHHHHHHh
Confidence 99999999999999999999 998 88999999998876655555 4444444433
No 23
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.9e-34 Score=262.04 Aligned_cols=261 Identities=22% Similarity=0.282 Sum_probs=193.5
Q ss_pred cCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCc
Q 023157 8 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKV 87 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~ 87 (286)
+|+++..++|+....... .++++|+|+||++|..++.+....++++++||+||+|.+.++.++..+..++..++.+.
T Consensus 94 ~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~ 170 (720)
T 2zj8_A 94 IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKA 170 (720)
T ss_dssp GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTB
T ss_pred cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCC
Confidence 589999999987754431 24689999999999999888776788899999999999988788888888887776689
Q ss_pred cEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEE------Eccc----hhhHHHHHHHHHhhccCcceEE
Q 023157 88 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYV------NVEK----EEWKLETLCDLYETLAITQSVI 157 (286)
Q Consensus 88 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~----~~~~~~~l~~~~~~~~~~~~iv 157 (286)
|++++|||+++. ..+.. ++.... +.. . ..+..+...+. .... ...+...+...+. +++++||
T Consensus 171 ~ii~lSATl~n~-~~~~~-~l~~~~-~~~--~-~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LV 242 (720)
T 2zj8_A 171 QIIGLSATIGNP-EELAE-WLNAEL-IVS--D-WRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALI 242 (720)
T ss_dssp EEEEEECCCSCH-HHHHH-HTTEEE-EEC--C-CCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEE
T ss_pred eEEEEcCCcCCH-HHHHH-HhCCcc-cCC--C-CCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEE
Confidence 999999999753 33333 333211 111 1 11111111111 1110 1223444444443 4579999
Q ss_pred EecchhhHHHHHHHHhcC---------------------------------CCeeEEecCCCCHHHHHHHHHHhhcCCCc
Q 023157 158 FVNTRRKVDWLTDKMRSR---------------------------------DHTVSATHGDMDQNTRDIIMREFRSGSSR 204 (286)
Q Consensus 158 f~~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 204 (286)
||+++++++.++..|.+. ..++..+||+++.++|..+++.|++|+.+
T Consensus 243 F~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~ 322 (720)
T 2zj8_A 243 FVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIK 322 (720)
T ss_dssp ECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSC
T ss_pred EecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCe
Confidence 999999999999988653 12489999999999999999999999999
Q ss_pred EEEEecCCccCCCCCCCcEEEE----cc----CCCCcchhhhhhcccccCC--CcceEEEEeccCcHHHHHHHHHHhchh
Q 023157 205 VLITTDLLARGIDVQQVSLVIN----YD----LPTQPENYLHRIGRSGRFG--RKGVAINFVTRDDERMLFDIQKFYNVV 274 (286)
Q Consensus 205 vlv~T~~~~~Gidi~~~~~vi~----~~----~~~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ 274 (286)
|||||+++++|+|+|++++||. ++ .|.|..+|.||+||+||.| ..|.|++++...+.. ..+++++...
T Consensus 323 vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~--~~~~~~~~~~ 400 (720)
T 2zj8_A 323 AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR--EVMNHYIFGK 400 (720)
T ss_dssp EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH--HHHHHHTTSC
T ss_pred EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH--HHHHHHhcCC
Confidence 9999999999999999999998 55 5889999999999999987 468999999887732 2344555555
Q ss_pred cccCCcc
Q 023157 275 IEELPSN 281 (286)
Q Consensus 275 ~~~~~~~ 281 (286)
.+.+.+.
T Consensus 401 ~~~i~s~ 407 (720)
T 2zj8_A 401 PEKLFSQ 407 (720)
T ss_dssp CCCCCCC
T ss_pred CCCcEee
Confidence 5554444
No 24
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=269.57 Aligned_cols=259 Identities=19% Similarity=0.249 Sum_probs=190.6
Q ss_pred eEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEE
Q 023157 11 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVG 90 (286)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 90 (286)
.+..++|+.+.. ++++|+|+||++|.+.+.+....+.++++||+||+|.+.+++++..+..++..++.+.|++
T Consensus 253 ~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl 325 (1108)
T 3l9o_A 253 DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYV 325 (1108)
T ss_dssp SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEE
T ss_pred CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEE
Confidence 677888887643 4589999999999999988777788899999999999999999999999999999999999
Q ss_pred EEEeecChhH--HHHHHHhcCCCeEEEecCCccccccceeEEEEccc---------h-----------------------
Q 023157 91 VFSATMPPEA--LEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEK---------E----------------------- 136 (286)
Q Consensus 91 ~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~----------------------- 136 (286)
+||||+++.. ..........+..+...... +..+.++++.... .
T Consensus 326 ~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (1108)
T 3l9o_A 326 FLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDP 403 (1108)
T ss_dssp EEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--------
T ss_pred EEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccc
Confidence 9999987542 23334444445444433321 1222222221100 0
Q ss_pred ----------------------hhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCe----------------
Q 023157 137 ----------------------EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT---------------- 178 (286)
Q Consensus 137 ----------------------~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~---------------- 178 (286)
......+...+......++||||+++..|+.++..|...++.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~ 483 (1108)
T 3l9o_A 404 NSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAI 483 (1108)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSC
T ss_pred cccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 112333444444456679999999999999999998653221
Q ss_pred -----------------------eEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCC----
Q 023157 179 -----------------------VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT---- 231 (286)
Q Consensus 179 -----------------------~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~---- 231 (286)
+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||.++.|.
T Consensus 484 ~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~ 563 (1108)
T 3l9o_A 484 ALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQ 563 (1108)
T ss_dssp THHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSC
T ss_pred hhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccc
Confidence 79999999999999999999999999999999999999999999999766543
Q ss_pred ----CcchhhhhhcccccCC--CcceEEEEeccCcHHHHHHHHHHhchhcccCCc
Q 023157 232 ----QPENYLHRIGRSGRFG--RKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 280 (286)
Q Consensus 232 ----s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (286)
|+.+|+||+||+||.| ..|.+++++++.... ..+.+++......+.+
T Consensus 564 ~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~--~~~~~l~~~~~~~L~S 616 (1108)
T 3l9o_A 564 FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP--QVAKGMVKGQADRLDS 616 (1108)
T ss_dssp EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCH--HHHHHHHHCCCCCCCC
T ss_pred cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCH--HHHHHHhcCCCccccc
Confidence 5667999999999998 578888888776322 2334444444444443
No 25
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-33 Score=259.18 Aligned_cols=247 Identities=19% Similarity=0.281 Sum_probs=190.5
Q ss_pred eEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEE
Q 023157 11 KVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVG 90 (286)
Q Consensus 11 ~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 90 (286)
++..++|+.+... +++|+|+||++|.+.+.+....+.++++||+||+|.+.+++++..+..++..++.+.+++
T Consensus 155 ~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il 227 (1010)
T 2xgj_A 155 DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYV 227 (1010)
T ss_dssp CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEE
T ss_pred CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEE
Confidence 6778888876542 578999999999998888777888999999999999999888888999999999999999
Q ss_pred EEEeecChhHHHHHHH---hcCCCeEEEecCCccccccceeEEEEcc---------ch----------------------
Q 023157 91 VFSATMPPEALEITRK---FMNKPVRILVKRDELTLEGIKQFYVNVE---------KE---------------------- 136 (286)
Q Consensus 91 ~~SAT~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~---------------------- 136 (286)
++|||+++.. ++..+ ....+..+...... +..+.+++.... ..
T Consensus 228 ~LSATi~n~~-e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (1010)
T 2xgj_A 228 FLSATIPNAM-EFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDD 304 (1010)
T ss_dssp EEECCCTTHH-HHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------
T ss_pred EEcCCCCCHH-HHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccc
Confidence 9999987642 22222 23444444433221 122333332211 00
Q ss_pred -----------------------hhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCC----------------
Q 023157 137 -----------------------EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDH---------------- 177 (286)
Q Consensus 137 -----------------------~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~---------------- 177 (286)
...+..+...+......++|||++++..|+.++..|...++
T Consensus 305 ~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~ 384 (1010)
T 2xgj_A 305 PNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNA 384 (1010)
T ss_dssp ------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 11222344444444556999999999999999999976433
Q ss_pred -----------------------eeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEE----ccC-
Q 023157 178 -----------------------TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL- 229 (286)
Q Consensus 178 -----------------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~----~~~- 229 (286)
++..+||++++.+|..+++.|++|..+|||||+++++|+|+|.+++||. +|.
T Consensus 385 ~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~ 464 (1010)
T 2xgj_A 385 IALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQ 464 (1010)
T ss_dssp HTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSS
T ss_pred HHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCc
Confidence 2789999999999999999999999999999999999999999999998 888
Q ss_pred ---CCCcchhhhhhcccccCCC--cceEEEEeccC-cHHHHHHH
Q 023157 230 ---PTQPENYLHRIGRSGRFGR--KGVAINFVTRD-DERMLFDI 267 (286)
Q Consensus 230 ---~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~-~~~~~~~~ 267 (286)
|.|+.+|.||+||+||.|. .|.+++++++. +...+..+
T Consensus 465 ~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 465 QFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp CEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 8899999999999999986 49999999876 44444443
No 26
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=5.9e-34 Score=259.31 Aligned_cols=262 Identities=18% Similarity=0.274 Sum_probs=189.8
Q ss_pred cCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhC---C
Q 023157 8 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL---P 84 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~---~ 84 (286)
.|+++..++|+...... ..++++|+|+||++|..++.+....++++++||+||+|.+.+++++..+..++..+ .
T Consensus 94 ~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~ 170 (702)
T 2p6r_A 94 IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN 170 (702)
T ss_dssp TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcC
Confidence 58999999998776543 12368999999999999998877668889999999999998877776666555443 5
Q ss_pred cCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEE------Eccc------hhhHHHHHHHHHhhccC
Q 023157 85 AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYV------NVEK------EEWKLETLCDLYETLAI 152 (286)
Q Consensus 85 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~------~~~~~~~l~~~~~~~~~ 152 (286)
++.|++++|||+++ ...+.. +++.+. +..... +..+...+. .... .......+...+. ++
T Consensus 171 ~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 242 (702)
T 2p6r_A 171 KALRVIGLSATAPN-VTEIAE-WLDADY-YVSDWR---PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--EN 242 (702)
T ss_dssp TTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCCC---SSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TT
T ss_pred cCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCCC---CccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cC
Confidence 68999999999975 334443 443221 111111 111111111 1110 0013444444443 46
Q ss_pred cceEEEecchhhHHHHHHHHhcC------------------------------CCeeEEecCCCCHHHHHHHHHHhhcCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSR------------------------------DHTVSATHGDMDQNTRDIIMREFRSGS 202 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~ 202 (286)
+++||||+++++++.+++.|.+. +.++..+||+++.++|..+++.|++|+
T Consensus 243 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~ 322 (702)
T 2p6r_A 243 GGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGN 322 (702)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCC
Confidence 79999999999999999988642 135888999999999999999999999
Q ss_pred CcEEEEecCCccCCCCCCCcEEEE----cc---CCCCcchhhhhhcccccCC--CcceEEEEeccCcHHHHHHHHHHhch
Q 023157 203 SRVLITTDLLARGIDVQQVSLVIN----YD---LPTQPENYLHRIGRSGRFG--RKGVAINFVTRDDERMLFDIQKFYNV 273 (286)
Q Consensus 203 ~~vlv~T~~~~~Gidi~~~~~vi~----~~---~~~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~~~~~~~~~~~~~ 273 (286)
.+|||||+++++|+|+|++++||. +| .|.|..+|.||+||+||.| ..|.|+++++..+.. ..+++++..
T Consensus 323 ~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~--~~~~~~l~~ 400 (702)
T 2p6r_A 323 IKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE--IAVKRYIFG 400 (702)
T ss_dssp CCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH--HHHHTTTSS
T ss_pred CeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHH--HHHHHHhcC
Confidence 999999999999999999999998 55 6889999999999999987 468999999887622 223344444
Q ss_pred hcccCCcch
Q 023157 274 VIEELPSNV 282 (286)
Q Consensus 274 ~~~~~~~~l 282 (286)
..+.+.+.|
T Consensus 401 ~~e~~~s~l 409 (702)
T 2p6r_A 401 EPERITSKL 409 (702)
T ss_dssp CCCCCCCCC
T ss_pred CCCCceeec
Confidence 444444433
No 27
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.7e-33 Score=256.97 Aligned_cols=263 Identities=17% Similarity=0.223 Sum_probs=189.9
Q ss_pred ccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcC
Q 023157 7 YLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAK 86 (286)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~ 86 (286)
.+|+++..++|+....... .++++|+|+||++|..++.+....++++++||+||+|.+.+..++..+..++..++ +
T Consensus 100 ~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~-~ 175 (715)
T 2va8_A 100 LIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK-R 175 (715)
T ss_dssp GGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH-T
T ss_pred cCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc-c
Confidence 3588999999987765432 23689999999999999888776788999999999999887778888888777665 7
Q ss_pred ccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeE------------EEEcc-------chhhHHHHHHHHH
Q 023157 87 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF------------YVNVE-------KEEWKLETLCDLY 147 (286)
Q Consensus 87 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------~~~~~-------~~~~~~~~l~~~~ 147 (286)
.|++++|||+++. ..+..++ +.+. +..... +..+... ....+ ....+...+...+
T Consensus 176 ~~ii~lSATl~n~-~~~~~~l-~~~~-~~~~~r---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (715)
T 2va8_A 176 RNLLALSATISNY-KQIAKWL-GAEP-VATNWR---PVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL 249 (715)
T ss_dssp SEEEEEESCCTTH-HHHHHHH-TCEE-EECCCC---SSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHH
T ss_pred CcEEEEcCCCCCH-HHHHHHh-CCCc-cCCCCC---CCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHH
Confidence 9999999999742 3444433 3211 111100 0111111 11111 0123445555555
Q ss_pred hhccCcceEEEecchhhHHHHHHHHhcCC------------------------------------CeeEEecCCCCHHHH
Q 023157 148 ETLAITQSVIFVNTRRKVDWLTDKMRSRD------------------------------------HTVSATHGDMDQNTR 191 (286)
Q Consensus 148 ~~~~~~~~ivf~~~~~~~~~l~~~l~~~~------------------------------------~~~~~~~~~~~~~~r 191 (286)
. .++++|||++++++++.+++.|.+.. ..+..+||+++.++|
T Consensus 250 ~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r 327 (715)
T 2va8_A 250 S--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALR 327 (715)
T ss_dssp T--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred h--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHH
Confidence 3 46899999999999999999987642 248999999999999
Q ss_pred HHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEE----cc-------CCCCcchhhhhhcccccCCC--cceEEEEecc
Q 023157 192 DIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD-------LPTQPENYLHRIGRSGRFGR--KGVAINFVTR 258 (286)
Q Consensus 192 ~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~----~~-------~~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~ 258 (286)
..+++.|++|+.+|||||+++++|+|+|++++||. ++ .|.|..+|.||+||+||.|. .|.|+++++.
T Consensus 328 ~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~ 407 (715)
T 2va8_A 328 DLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRD 407 (715)
T ss_dssp HHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSC
T ss_pred HHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCC
Confidence 99999999999999999999999999999999998 88 78999999999999999873 6899999877
Q ss_pred CcHHHHHHHHHHhchhcccCCcch
Q 023157 259 DDERMLFDIQKFYNVVIEELPSNV 282 (286)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~l 282 (286)
.+. ....+++++....+.+.+.|
T Consensus 408 ~~~-~~~~~~~~l~~~~e~~~s~l 430 (715)
T 2va8_A 408 KED-VDRVFKKYVLSDVEPIESKL 430 (715)
T ss_dssp GGG-HHHHHHHTTSSCCCCCCCSC
T ss_pred chH-HHHHHHHHHcCCCCCceecC
Confidence 653 11234445544444444443
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4e-34 Score=263.47 Aligned_cols=258 Identities=18% Similarity=0.225 Sum_probs=144.1
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCC-CCCCccEEEEehhhHhhccccHHH-HHHHH
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDEADEMLSRGFKDQ-IYDIF 80 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~~~~-~~~i~ 80 (286)
++....++++..++|+.....+...+..+++|+|+||+++.+.+....+ .+.++++||+||||++.+.+.... +..+.
T Consensus 318 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~ 397 (797)
T 4a2q_A 318 HHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYL 397 (797)
T ss_dssp HHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHH
T ss_pred HhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHH
Confidence 3444558999999999988777777777899999999999999988776 688899999999999887643322 22333
Q ss_pred Hh----CCcCccEEEEEeecChh-----------HHHHH------------------HHhcCCCeEEEecCCcccccc--
Q 023157 81 QL----LPAKVQVGVFSATMPPE-----------ALEIT------------------RKFMNKPVRILVKRDELTLEG-- 125 (286)
Q Consensus 81 ~~----~~~~~~~i~~SAT~~~~-----------~~~~~------------------~~~~~~~~~~~~~~~~~~~~~-- 125 (286)
.. ..+.++++++||||... ...+. ..+...+..............
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 477 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHH
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHH
Confidence 22 14568899999999521 11111 111111111111000000000
Q ss_pred -------------------------ceeEEE-------Ec------------c---------------------------
Q 023157 126 -------------------------IKQFYV-------NV------------E--------------------------- 134 (286)
Q Consensus 126 -------------------------i~~~~~-------~~------------~--------------------------- 134 (286)
...... ++ .
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 557 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 000000 00 0
Q ss_pred ----------------------------------------------------chhhHHHHHHHHHhh----ccCcceEEE
Q 023157 135 ----------------------------------------------------KEEWKLETLCDLYET----LAITQSVIF 158 (286)
Q Consensus 135 ----------------------------------------------------~~~~~~~~l~~~~~~----~~~~~~ivf 158 (286)
....|...+..++.. .++.++|||
T Consensus 558 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF 637 (797)
T 4a2q_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (797)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred hhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEE
Confidence 001244444445543 466899999
Q ss_pred ecchhhHHHHHHHHhcC------------CCeeEEecCCCCHHHHHHHHHHhhc-CCCcEEEEecCCccCCCCCCCcEEE
Q 023157 159 VNTRRKVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVI 225 (286)
Q Consensus 159 ~~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~T~~~~~Gidi~~~~~vi 225 (286)
|+++.+++.+++.|+.. |.+...+||+++..+|..+++.|++ |+.+|||||+++++|+|+|++++||
T Consensus 638 ~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI 717 (797)
T 4a2q_A 638 AKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVV 717 (797)
T ss_dssp ESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEE
T ss_pred ECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEE
Confidence 99999999999999773 5567778999999999999999999 9999999999999999999999999
Q ss_pred EccCCCCcchhhhhhcccccCCCcceEEEEeccCcHH
Q 023157 226 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 262 (286)
Q Consensus 226 ~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 262 (286)
++|+|+|+..|+||+|| ||. .+|.++++++..+..
T Consensus 718 ~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 718 LYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp EESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred EeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 99999999999999999 998 889999999886543
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.9e-33 Score=263.92 Aligned_cols=252 Identities=20% Similarity=0.270 Sum_probs=194.7
Q ss_pred ccccccCceEEEEEcCcch---HHHHHHHhC-CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhc---------
Q 023157 3 ALGDYLGVKVHACVGGTSV---REDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS--------- 69 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~---~~~~~~~~~-~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~--------- 69 (286)
++. ..++++..++|+.+. ..+...+.. .++|+|+||++|.+.+.. +.+.++++||+||+|++..
T Consensus 143 ~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L 219 (1104)
T 4ddu_A 143 KLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLL 219 (1104)
T ss_dssp TTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHH
T ss_pred Hhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhh
Confidence 344 578899999999987 455555555 499999999999887664 5567899999999997664
Q ss_pred --cccHHH-HHHHHHhCC-----------cCccEEEEEeec-ChhHH-HHHHHhcCCCeEEEecCCccccccceeEEEEc
Q 023157 70 --RGFKDQ-IYDIFQLLP-----------AKVQVGVFSATM-PPEAL-EITRKFMNKPVRILVKRDELTLEGIKQFYVNV 133 (286)
Q Consensus 70 --~~~~~~-~~~i~~~~~-----------~~~~~i~~SAT~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 133 (286)
+++... +..++..++ .+.|++++|||+ +.... ........ +...........+.+.+..+
T Consensus 220 ~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~ 295 (1104)
T 4ddu_A 220 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS 295 (1104)
T ss_dssp HTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC
T ss_pred HhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec
Confidence 566666 777777766 778999999995 43332 22223322 22233334456677777666
Q ss_pred cchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeE-EecCCCCHHHHHHHHHHhhcCCCcEEEE----
Q 023157 134 EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVS-ATHGDMDQNTRDIIMREFRSGSSRVLIT---- 208 (286)
Q Consensus 134 ~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vlv~---- 208 (286)
+ +...+..+++.. +.++||||+++..++.++..|+..|+.+. .+||. |.+ ++.|++|+.+||||
T Consensus 296 ~----k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~ 364 (1104)
T 4ddu_A 296 R----SKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAY 364 (1104)
T ss_dssp C----CHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTT
T ss_pred C----HHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCC
Confidence 3 444555555553 48999999999999999999999999998 99982 555 99999999999999
Q ss_pred ecCCccCCCCCC-CcEEEEccCCC--------------------------------------------------------
Q 023157 209 TDLLARGIDVQQ-VSLVINYDLPT-------------------------------------------------------- 231 (286)
Q Consensus 209 T~~~~~Gidi~~-~~~vi~~~~~~-------------------------------------------------------- 231 (286)
|+++++|+|+|+ +++||++|+|.
T Consensus 365 TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~ 444 (1104)
T 4ddu_A 365 YGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEM 444 (1104)
T ss_dssp HHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhc
Confidence 999999999999 99999999998
Q ss_pred ----------------CcchhhhhhcccccCCCcc--eEEEEeccCcHHHHHHHHHHhc
Q 023157 232 ----------------QPENYLHRIGRSGRFGRKG--VAINFVTRDDERMLFDIQKFYN 272 (286)
Q Consensus 232 ----------------s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~~~~~~~~~~~~~~ 272 (286)
+..+|+||+||+||.+.+| .++.++..+|...++.+++.++
T Consensus 445 ~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 445 FRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp CCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred cceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 6678999999999976543 4555555688899999988876
No 30
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=100.00 E-value=3.7e-32 Score=203.81 Aligned_cols=163 Identities=68% Similarity=1.050 Sum_probs=149.0
Q ss_pred ccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCC
Q 023157 124 EGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS 203 (286)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 203 (286)
..+.+++..++....|...+..+++..+++++||||+++..++.+++.|+..++.+..+||++++.+|..+++.|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 35778888888777699999999998888999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCcchh
Q 023157 204 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVA 283 (286)
Q Consensus 204 ~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 283 (286)
+|||||+++++|+|+|++++||++++|++..+|.||+||+||.|+.|.+++++.+.+...+..++++++..++++|.++.
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 161 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCT
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccC
Q 023157 284 DLL 286 (286)
Q Consensus 284 ~l~ 286 (286)
+++
T Consensus 162 ~~~ 164 (165)
T 1fuk_A 162 TLL 164 (165)
T ss_dssp TTT
T ss_pred hhc
Confidence 764
No 31
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.7e-32 Score=255.58 Aligned_cols=248 Identities=17% Similarity=0.242 Sum_probs=187.3
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCcc
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 88 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 88 (286)
++++..++|+.... .+++|+|+||++|.+.+......+.++++||+||+|++.+++++..+..++..+++..+
T Consensus 108 ~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~ 180 (997)
T 4a4z_A 108 DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVK 180 (997)
T ss_dssp -CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCE
T ss_pred CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCC
Confidence 78899999987644 35899999999999998887777888999999999999999888889999999999999
Q ss_pred EEEEEeecChhHHHHHHHhc---CCCeEEEecCCccccccceeEEEE---------------------------------
Q 023157 89 VGVFSATMPPEALEITRKFM---NKPVRILVKRDELTLEGIKQFYVN--------------------------------- 132 (286)
Q Consensus 89 ~i~~SAT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~--------------------------------- 132 (286)
++++|||+++.. ++..++. .....+..... .+..+.+++..
T Consensus 181 iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~--r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (997)
T 4a4z_A 181 FILLSATVPNTY-EFANWIGRTKQKNIYVISTPK--RPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKG 257 (997)
T ss_dssp EEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSS--CSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------
T ss_pred EEEEcCCCCChH-HHHHHHhcccCCceEEEecCC--CCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccc
Confidence 999999987543 3333332 12222211111 11111111110
Q ss_pred -----------------------------------------------------------ccchhhHHHHHHHHHhhccCc
Q 023157 133 -----------------------------------------------------------VEKEEWKLETLCDLYETLAIT 153 (286)
Q Consensus 133 -----------------------------------------------------------~~~~~~~~~~l~~~~~~~~~~ 153 (286)
......+...+...+......
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~ 337 (997)
T 4a4z_A 258 APSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELL 337 (997)
T ss_dssp -----------------------------------------------------------CCCCTTHHHHHHHHHHHTTCC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCC
Confidence 001112355566666666778
Q ss_pred ceEEEecchhhHHHHHHHHhcCCC---------------------------------------eeEEecCCCCHHHHHHH
Q 023157 154 QSVIFVNTRRKVDWLTDKMRSRDH---------------------------------------TVSATHGDMDQNTRDII 194 (286)
Q Consensus 154 ~~ivf~~~~~~~~~l~~~l~~~~~---------------------------------------~~~~~~~~~~~~~r~~~ 194 (286)
++|||+++++.|+.++..|...++ ++..+|+++++.+|..+
T Consensus 338 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v 417 (997)
T 4a4z_A 338 PMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELI 417 (997)
T ss_dssp SEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHH
Confidence 999999999999999999977654 47999999999999999
Q ss_pred HHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCC---------CcchhhhhhcccccCC--CcceEEEEec--cCcH
Q 023157 195 MREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT---------QPENYLHRIGRSGRFG--RKGVAINFVT--RDDE 261 (286)
Q Consensus 195 ~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~---------s~~~~~Q~~GR~~R~~--~~g~~~~~~~--~~~~ 261 (286)
++.|.+|..+|||||+++++|+|+|+ ..||+.+.|. |..+|+||+||+||.| ..|.+++++. ..+.
T Consensus 418 ~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~ 496 (997)
T 4a4z_A 418 EILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSI 496 (997)
T ss_dssp HHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCH
T ss_pred HHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchH
Confidence 99999999999999999999999999 6667766655 9999999999999988 4577888873 2344
Q ss_pred HHHHHH
Q 023157 262 RMLFDI 267 (286)
Q Consensus 262 ~~~~~~ 267 (286)
..+..+
T Consensus 497 ~~~~~~ 502 (997)
T 4a4z_A 497 ATFKEV 502 (997)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=2.7e-33 Score=260.74 Aligned_cols=257 Identities=18% Similarity=0.220 Sum_probs=143.1
Q ss_pred cccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCC-CCCCccEEEEehhhHhhccccH-HHHHHHHH
Q 023157 4 LGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSL-RPDYIKMFVLDEADEMLSRGFK-DQIYDIFQ 81 (286)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~-~~~~~~~iIiDE~h~~~~~~~~-~~~~~i~~ 81 (286)
+....++++..++|+.+...+...+..+++|+|+||+++.+.+.+..+ .+.++++||+||||++.+.+.. ..+..+..
T Consensus 319 ~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 319 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred HhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 344458999999999887766666666789999999999999988766 6788999999999998766432 22323332
Q ss_pred h----CCcCccEEEEEeecChh-----------HHHHH------------------HHhcCCCeEEEecCCcccccc---
Q 023157 82 L----LPAKVQVGVFSATMPPE-----------ALEIT------------------RKFMNKPVRILVKRDELTLEG--- 125 (286)
Q Consensus 82 ~----~~~~~~~i~~SAT~~~~-----------~~~~~------------------~~~~~~~~~~~~~~~~~~~~~--- 125 (286)
. ....++++++|||+... ...+. ..+...+..............
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 2 13468899999999521 11111 111122221111111000000
Q ss_pred ------------------------ceeEEE-------Ec------------c----------------------------
Q 023157 126 ------------------------IKQFYV-------NV------------E---------------------------- 134 (286)
Q Consensus 126 ------------------------i~~~~~-------~~------------~---------------------------- 134 (286)
+..... ++ +
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 000000 00 0
Q ss_pred ---------------------------------------------------chhhHHHHHHHHHhh----ccCcceEEEe
Q 023157 135 ---------------------------------------------------KEEWKLETLCDLYET----LAITQSVIFV 159 (286)
Q Consensus 135 ---------------------------------------------------~~~~~~~~l~~~~~~----~~~~~~ivf~ 159 (286)
....|...+..++.. .++.++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 001233444445543 3568999999
Q ss_pred cchhhHHHHHHHHhcC------------CCeeEEecCCCCHHHHHHHHHHhhc-CCCcEEEEecCCccCCCCCCCcEEEE
Q 023157 160 NTRRKVDWLTDKMRSR------------DHTVSATHGDMDQNTRDIIMREFRS-GSSRVLITTDLLARGIDVQQVSLVIN 226 (286)
Q Consensus 160 ~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~T~~~~~Gidi~~~~~vi~ 226 (286)
+++.+++.+++.|... |.....+||+++..+|.++++.|++ |+.+|||||+++++|+|+|++++||+
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 9999999999999876 5566777899999999999999998 99999999999999999999999999
Q ss_pred ccCCCCcchhhhhhcccccCCCcceEEEEeccCcHH
Q 023157 227 YDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 262 (286)
Q Consensus 227 ~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 262 (286)
+|+|+|+.+|+||+|| ||. ..|.++.++...+..
T Consensus 719 yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp ESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 9999999999999999 998 779999998876543
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=9.7e-33 Score=251.78 Aligned_cols=106 Identities=23% Similarity=0.372 Sum_probs=90.9
Q ss_pred CcceEEEecchhhHHHHHHHHhcC------CCeeEEecCC--------CCHHHHHHHHHHhhcCCCcEEEEecCCccCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSR------DHTVSATHGD--------MDQNTRDIIMREFRSGSSRVLITTDLLARGID 217 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid 217 (286)
+.++||||+++.+++.+++.|+.. |+.+..+||+ |+..+|..+++.|++|+.+|||||+++++|+|
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 789999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred CCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccC
Q 023157 218 VQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 218 i~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 259 (286)
+|++++||++|+|+|+..|+||+||+||.| +.+++++...
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 999999999999999999999999976653 4444444433
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.2e-33 Score=263.53 Aligned_cols=252 Identities=17% Similarity=0.291 Sum_probs=190.9
Q ss_pred ccccccCc----eEEEEEcCcchHHHH---HHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHH
Q 023157 3 ALGDYLGV----KVHACVGGTSVREDQ---RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQ 75 (286)
Q Consensus 3 ~~~~~~~~----~~~~~~g~~~~~~~~---~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~ 75 (286)
++....++ ++..++|+.+...+. ..+.+ ++|+|+||++|.+.+.+ +.++++||+||+|++.++ +..
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~--~~~ 193 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKA--SKN 193 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTS--THH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhc--ccc
Confidence 44555677 899999999877643 33445 99999999999987765 557899999999999884 577
Q ss_pred HHHHHHhCC-----------cCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHH
Q 023157 76 IYDIFQLLP-----------AKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLC 144 (286)
Q Consensus 76 ~~~i~~~~~-----------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~ 144 (286)
+..+...++ ...|.+++|||+++. ......+...+..+...........+.+.+.. ..+...+.
T Consensus 194 ~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~----~~k~~~L~ 268 (1054)
T 1gku_B 194 VDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVN----DESISTLS 268 (1054)
T ss_dssp HHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEES----CCCTTTTH
T ss_pred HHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEec----hhHHHHHH
Confidence 777776663 467899999999876 32222222222222233333344455665552 22445556
Q ss_pred HHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEE----ecCCccCCCCCC
Q 023157 145 DLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLIT----TDLLARGIDVQQ 220 (286)
Q Consensus 145 ~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~----T~~~~~Gidi~~ 220 (286)
.+++.. +.++||||+++..|+.+++.|+.. +.+..+||++ ..+++.|++|+.+|||| |+++++|+|+|+
T Consensus 269 ~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~ 341 (1054)
T 1gku_B 269 SILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPE 341 (1054)
T ss_dssp HHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTT
T ss_pred HHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCC
Confidence 666654 478999999999999999999988 8999999998 37889999999999999 899999999999
Q ss_pred C-cEEEEccCC---------------------------------------------------------------------
Q 023157 221 V-SLVINYDLP--------------------------------------------------------------------- 230 (286)
Q Consensus 221 ~-~~vi~~~~~--------------------------------------------------------------------- 230 (286)
+ ++||++|.|
T Consensus 342 VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 421 (1054)
T 1gku_B 342 RIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEV 421 (1054)
T ss_dssp TCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEE
T ss_pred cccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecce
Confidence 5 999999999
Q ss_pred --CCcchhhhhhcccccCCCcc--eEEEEeccCcHHHHHHHHHHhch
Q 023157 231 --TQPENYLHRIGRSGRFGRKG--VAINFVTRDDERMLFDIQKFYNV 273 (286)
Q Consensus 231 --~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~~~~~~~~~~~~~~~ 273 (286)
.+..+|+||+||+||.|.+| .+++++...+...+..+++.++.
T Consensus 422 ~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 422 IFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred ecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987665 58888888899999999888875
No 35
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.98 E-value=1e-31 Score=205.54 Aligned_cols=180 Identities=27% Similarity=0.455 Sum_probs=146.7
Q ss_pred HHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEec
Q 023157 104 TRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATH 183 (286)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~ 183 (286)
...++.+|..+.+.........+.+.+..++... |...+..++.... .++||||+++..++.+++.|+..++.+..+|
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~-K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEA-KMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGG-HHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHH-HHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 3456677777777776677788999998887765 8888888887654 6899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccC-cHH
Q 023157 184 GDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DER 262 (286)
Q Consensus 184 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~ 262 (286)
|++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+++.+|+||+||+||.|+.|.+++++++. +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876 788
Q ss_pred HHHHHHHHhchhcccCCcchhcc
Q 023157 263 MLFDIQKFYNVVIEELPSNVADL 285 (286)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~l 285 (286)
....+++.++...+.+|.+|.++
T Consensus 166 ~~~~l~~~l~~~~~~~p~~l~~~ 188 (191)
T 2p6n_A 166 VLMDLKALLLEAKQKVPPVLQVL 188 (191)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHST
T ss_pred HHHHHHHHHHHccCcCCHHHHhh
Confidence 89999999999999999998775
No 36
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.98 E-value=5e-31 Score=197.18 Aligned_cols=158 Identities=41% Similarity=0.645 Sum_probs=147.6
Q ss_pred cccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc
Q 023157 121 LTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 200 (286)
Q Consensus 121 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 200 (286)
....++.+.+..++... |...+..++...++.++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++
T Consensus 5 ~~~~~i~~~~~~~~~~~-K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREEN-KFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCGGG-HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECChHH-HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 44567888888887655 89999999988888899999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCC
Q 023157 201 GSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 279 (286)
Q Consensus 201 ~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (286)
|+.+|||||+++++|+|+|++++||++++|+++.+|.||+||+||.|+.|.+++++.+.+...+..+++.++..+++++
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEECC
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998887654
No 37
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.98 E-value=6.5e-31 Score=248.23 Aligned_cols=241 Identities=16% Similarity=0.208 Sum_probs=182.4
Q ss_pred cccccCceEEEEEcCcchHHHHHHH----hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHH
Q 023157 4 LGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDI 79 (286)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i 79 (286)
+...+++++..++|..+..+....+ .+.++|+|+||+.+. ..+.+.++++||+||+|++ +......
T Consensus 675 ~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~-----g~~~~~~ 744 (1151)
T 2eyq_A 675 RFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF-----GVRHKER 744 (1151)
T ss_dssp HSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS-----CHHHHHH
T ss_pred HhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhc-----ChHHHHH
Confidence 3445678999999887765544332 236999999997653 3456788999999999984 3333444
Q ss_pred HHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEe
Q 023157 80 FQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFV 159 (286)
Q Consensus 80 ~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~ 159 (286)
+..+..+.++++|||||.+...........+... +.........+..+........ ....+...+ ..+++++|||
T Consensus 745 l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~--i~~~~~~r~~i~~~~~~~~~~~-i~~~il~~l--~~g~qvlvf~ 819 (1151)
T 2eyq_A 745 IKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI--IATPPARRLAVKTFVREYDSMV-VREAILREI--LRGGQVYYLY 819 (1151)
T ss_dssp HHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEE--CCCCCCBCBCEEEEEEECCHHH-HHHHHHHHH--TTTCEEEEEC
T ss_pred HHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceE--EecCCCCccccEEEEecCCHHH-HHHHHHHHH--hcCCeEEEEE
Confidence 5555567899999999988877665554433222 2222222333444444333222 222222222 2567999999
Q ss_pred cchhhHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccC-CCCcchh
Q 023157 160 NTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-PTQPENY 236 (286)
Q Consensus 160 ~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~-~~s~~~~ 236 (286)
+++.+++.+++.|++. +..+..+||+|+..+|.++++.|++|+.+|||||+++++|+|+|++++||++++ +.+..+|
T Consensus 820 ~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l 899 (1151)
T 2eyq_A 820 NDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 899 (1151)
T ss_dssp CCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHH
Confidence 9999999999999887 789999999999999999999999999999999999999999999999999988 5789999
Q ss_pred hhhhcccccCCCcceEEEEeccC
Q 023157 237 LHRIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 237 ~Q~~GR~~R~~~~g~~~~~~~~~ 259 (286)
.||+||+||.|..|.|++++.+.
T Consensus 900 ~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 900 HQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp HHHHTTCCBTTBCEEEEEEECCG
T ss_pred HHHHhccCcCCCceEEEEEECCc
Confidence 99999999999999999998765
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.98 E-value=2.5e-32 Score=247.40 Aligned_cols=251 Identities=17% Similarity=0.226 Sum_probs=174.8
Q ss_pred ccccccCceEEEEEcCcchHHHHHHH----hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHH
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYD 78 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 78 (286)
++.+.+|+++..++|+.+..+....+ .+.++|+|+||+.+.+ .+.+.++++||+||+|++.... ..
T Consensus 439 ~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q-----r~ 508 (780)
T 1gm5_A 439 ESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ-----RE 508 (780)
T ss_dssp HHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----------C
T ss_pred HHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH-----HH
Confidence 34456689999999999876654333 2369999999987754 4567889999999999863221 11
Q ss_pred HHHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEE
Q 023157 79 IFQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIF 158 (286)
Q Consensus 79 i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf 158 (286)
.+.....++++++|||||.+....... .+................+................+...+ ..+.+++||
T Consensus 509 ~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l--~~g~qvlVf 584 (780)
T 1gm5_A 509 ALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEV--MRGGQAFIV 584 (780)
T ss_dssp CCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHT--TTSCCBCCB
T ss_pred HHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHH--hcCCcEEEE
Confidence 122223468999999999877555432 2222111222111112223322222221111222222221 246789999
Q ss_pred ecch--------hhHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEc
Q 023157 159 VNTR--------RKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINY 227 (286)
Q Consensus 159 ~~~~--------~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~ 227 (286)
|++. ..++.+++.|++ .+..+..+||+|+.++|..+++.|++|+.+|||||+++++|+|+|++++||++
T Consensus 585 ~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~ 664 (780)
T 1gm5_A 585 YPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIE 664 (780)
T ss_dssp CCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBC
T ss_pred ecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEe
Confidence 9965 457888999988 47889999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CcchhhhhhcccccCCCcceEEEEeccCcHHHHHHH
Q 023157 228 DLPT-QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDI 267 (286)
Q Consensus 228 ~~~~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~ 267 (286)
++|. +..++.||+||+||.|..|.|++++++.+......+
T Consensus 665 d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl 705 (780)
T 1gm5_A 665 NPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERL 705 (780)
T ss_dssp SCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHH
T ss_pred CCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHH
Confidence 9986 788999999999999999999999985444444443
No 39
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.97 E-value=2.1e-31 Score=202.96 Aligned_cols=164 Identities=35% Similarity=0.558 Sum_probs=139.4
Q ss_pred cccccceeEEEEccchhhHHHHHHHHHhhc-cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhh
Q 023157 121 LTLEGIKQFYVNVEKEEWKLETLCDLYETL-AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR 199 (286)
Q Consensus 121 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 199 (286)
....++.+.+..++... |...+..+++.. ++.++||||+++..++.+++.|+..|+.+..+||++++.+|..+++.|+
T Consensus 15 ~~~~~i~q~~~~v~~~~-K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 15 STSENITQKVVWVEESD-KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp -CCTTEEEEEEECCGGG-HHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCceEEEEEeCcHH-HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 45678899998888665 888888888876 5789999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCC
Q 023157 200 SGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 279 (286)
Q Consensus 200 ~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (286)
+|+.+|||||+++++|+|+|++++||++++|+++.+|.||+||+||.|+.|.+++++.+.+...+..+.+.++...+++|
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 173 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 173 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhcc
Q 023157 280 SNVADL 285 (286)
Q Consensus 280 ~~l~~l 285 (286)
++|.++
T Consensus 174 ~~l~~~ 179 (185)
T 2jgn_A 174 SWLENM 179 (185)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 40
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.97 E-value=6.5e-31 Score=198.95 Aligned_cols=160 Identities=45% Similarity=0.814 Sum_probs=147.9
Q ss_pred ccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcC
Q 023157 122 TLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG 201 (286)
Q Consensus 122 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 201 (286)
.+.++.+++..++....|...+..+++..+.+++||||+++.+++.+++.|...++.+..+||++++.+|..+++.|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 45678999999998777999999999988888999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCccCCCCCCCcEEEEccCC------CCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhc
Q 023157 202 SSRVLITTDLLARGIDVQQVSLVINYDLP------TQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVI 275 (286)
Q Consensus 202 ~~~vlv~T~~~~~Gidi~~~~~vi~~~~~------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (286)
+.+|||||+++++|+|+|++++||++++| .+..+|+||+||+||.|+.|.+++++.+.+...+..+++.++..+
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 163 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSSI 163 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCCC
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999 899999999999999999999999999999999999999999988
Q ss_pred ccCCcc
Q 023157 276 EELPSN 281 (286)
Q Consensus 276 ~~~~~~ 281 (286)
+++|..
T Consensus 164 ~~~~~~ 169 (175)
T 2rb4_A 164 KQLNAE 169 (175)
T ss_dssp EEECSS
T ss_pred cccCCc
Confidence 888764
No 41
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=3.2e-31 Score=199.72 Aligned_cols=161 Identities=37% Similarity=0.686 Sum_probs=145.8
Q ss_pred cccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCC
Q 023157 123 LEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS 202 (286)
Q Consensus 123 ~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 202 (286)
+..+.+++..++... |...+..+++..+..++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+
T Consensus 3 ~~~i~q~~~~~~~~~-K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNE-KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp --CCEEEEEECCGGG-HHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred cCCeEEEEEECChHH-HHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 356788888887655 8999999999888889999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccC-cHHHHHHHHHHhchhcccCCcc
Q 023157 203 SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRD-DERMLFDIQKFYNVVIEELPSN 281 (286)
Q Consensus 203 ~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 281 (286)
.+|||||+++++|+|+|++++||++++|+++..|.||+||+||.|+.|.+++++++. +...+..+++.++..++++|++
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 999999999999999999999999999999999999999999999999999999876 5678899999999999999987
Q ss_pred hhc
Q 023157 282 VAD 284 (286)
Q Consensus 282 l~~ 284 (286)
+..
T Consensus 162 ~~~ 164 (172)
T 1t5i_A 162 IDI 164 (172)
T ss_dssp ---
T ss_pred hch
Confidence 643
No 42
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.97 E-value=2.2e-30 Score=231.37 Aligned_cols=255 Identities=17% Similarity=0.221 Sum_probs=183.9
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHH-HHHHhcC------CCCCCCccEEEEehhhHhh-ccc--
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIKMFVLDEADEML-SRG-- 71 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l-~~~~~~~------~~~~~~~~~iIiDE~h~~~-~~~-- 71 (286)
+.+.+.+|+++..++||.+...+... .+++|+|+||++| ++++..+ .+.+..+.++|+||+|.++ +.+
T Consensus 145 ~~l~~~lgl~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~t 222 (844)
T 1tf5_A 145 GKIFEFLGLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEART 222 (844)
T ss_dssp HHHHHHTTCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTC
T ss_pred HHHHhhcCCeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcccc
Confidence 45677889999999999886654443 3689999999999 6766543 3556789999999999987 542
Q ss_pred -------------cHHHHHHHHHhCCc---------CccEE-----------------EEEeecChhHHHH---H--HHh
Q 023157 72 -------------FKDQIYDIFQLLPA---------KVQVG-----------------VFSATMPPEALEI---T--RKF 107 (286)
Q Consensus 72 -------------~~~~~~~i~~~~~~---------~~~~i-----------------~~SAT~~~~~~~~---~--~~~ 107 (286)
+...+..+...++. ..|+. ++|||.+.-.... + ..+
T Consensus 223 plIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l 302 (844)
T 1tf5_A 223 PLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVA 302 (844)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHT
T ss_pred chhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHH
Confidence 56777778777752 44555 6777754211111 1 111
Q ss_pred cCCC--eEE-----------------------------------Eec---------------------------------
Q 023157 108 MNKP--VRI-----------------------------------LVK--------------------------------- 117 (286)
Q Consensus 108 ~~~~--~~~-----------------------------------~~~--------------------------------- 117 (286)
+... ..+ .+.
T Consensus 303 ~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~ 382 (844)
T 1tf5_A 303 MQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEE 382 (844)
T ss_dssp CCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHH
Confidence 1100 000 000
Q ss_pred -------------CCccccccce-eEEEEccchhhHHHHHHHHHhh--ccCcceEEEecchhhHHHHHHHHhcCCCeeEE
Q 023157 118 -------------RDELTLEGIK-QFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSA 181 (286)
Q Consensus 118 -------------~~~~~~~~i~-~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~ 181 (286)
+...+..... ...... ....|...+...+.. ..+.++||||+|+..++.+++.|...|+.+..
T Consensus 383 e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~-~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~v 461 (844)
T 1tf5_A 383 EFRNIYNMQVVTIPTNRPVVRDDRPDLIYR-TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQV 461 (844)
T ss_dssp HHHHHHCCCEEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEE
T ss_pred HHHHHhCCceEEecCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEE
Confidence 0000000001 112223 334477777777654 35678999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCC--------CCcEEEEccCCCCcchhhhhhcccccCCCcceEE
Q 023157 182 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ--------QVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAI 253 (286)
Q Consensus 182 ~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~--------~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~ 253 (286)
+||++...++..+.+.++.| .|+|||+++++|+|++ +..+||.++.|.|...|.||+||+||.|.+|.++
T Consensus 462 Lhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~ 539 (844)
T 1tf5_A 462 LNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQ 539 (844)
T ss_dssp ECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred eeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEE
Confidence 99999888877666666555 6999999999999999 7889999999999999999999999999999999
Q ss_pred EEeccCcH
Q 023157 254 NFVTRDDE 261 (286)
Q Consensus 254 ~~~~~~~~ 261 (286)
.|++..|.
T Consensus 540 ~~vs~eD~ 547 (844)
T 1tf5_A 540 FYLSMEDE 547 (844)
T ss_dssp EEEETTSS
T ss_pred EEecHHHH
Confidence 99988764
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=2.2e-30 Score=251.21 Aligned_cols=260 Identities=15% Similarity=0.196 Sum_probs=188.5
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcC--CCCCCCccEEEEehhhHhhccccHHHHHHH-
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ--SLRPDYIKMFVLDEADEMLSRGFKDQIYDI- 79 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~--~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i- 79 (286)
+|++.+|+++..++|+...+.+. ..+++|+||||++|..++++. ...++++++||+||+|.+.+. .+..+..+
T Consensus 995 ~f~~~~g~~V~~ltGd~~~~~~~---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~le~il 1070 (1724)
T 4f92_B 995 KFQDRLNKKVVLLTGETSTDLKL---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPVLEVIC 1070 (1724)
T ss_dssp HHTTTSCCCEEECCSCHHHHHHH---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHHHHHHH
T ss_pred HhchhcCCEEEEEECCCCcchhh---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCccHHHHH
Confidence 45667899999999987654332 235799999999998777653 234678999999999987664 34444333
Q ss_pred ------HHhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhH--H----H-HHHHH
Q 023157 80 ------FQLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWK--L----E-TLCDL 146 (286)
Q Consensus 80 ------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~----~-~l~~~ 146 (286)
....+++.|++++|||+++ ..++.+++............+..+..+..+....+..... . . ....+
T Consensus 1071 ~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i 1149 (1724)
T 4f92_B 1071 SRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAI 1149 (1724)
T ss_dssp HHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHH
Confidence 2345678999999999974 4566666654444444444444444555554443332211 1 1 12222
Q ss_pred HhhccCcceEEEecchhhHHHHHHHHhcC----------------------------------CCeeEEecCCCCHHHHH
Q 023157 147 YETLAITQSVIFVNTRRKVDWLTDKMRSR----------------------------------DHTVSATHGDMDQNTRD 192 (286)
Q Consensus 147 ~~~~~~~~~ivf~~~~~~~~~l~~~l~~~----------------------------------~~~~~~~~~~~~~~~r~ 192 (286)
.+..+++++||||++++.++.++..|... ..+++.+|++|++.+|.
T Consensus 1150 ~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~ 1229 (1724)
T 4f92_B 1150 TKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERR 1229 (1724)
T ss_dssp HHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHH
T ss_pred HHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHH
Confidence 33456789999999999999888766321 13589999999999999
Q ss_pred HHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEE----cc------CCCCcchhhhhhcccccCCC--cceEEEEeccCc
Q 023157 193 IIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YD------LPTQPENYLHRIGRSGRFGR--KGVAINFVTRDD 260 (286)
Q Consensus 193 ~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~----~~------~~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~ 260 (286)
.+.+.|++|.++|||||+++++|+|+|...+||. ++ .|.+..+|.||+||+||.|. .|.+++++...+
T Consensus 1230 ~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~ 1309 (1724)
T 4f92_B 1230 LVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSK 1309 (1724)
T ss_dssp HHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGG
T ss_pred HHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchH
Confidence 9999999999999999999999999999888873 22 35689999999999999986 599999998887
Q ss_pred HHHHHHH
Q 023157 261 ERMLFDI 267 (286)
Q Consensus 261 ~~~~~~~ 267 (286)
...+.++
T Consensus 1310 ~~~~~~l 1316 (1724)
T 4f92_B 1310 KDFFKKF 1316 (1724)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665544
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=9.6e-32 Score=236.72 Aligned_cols=241 Identities=17% Similarity=0.160 Sum_probs=169.1
Q ss_pred cccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhC
Q 023157 4 LGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL 83 (286)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~ 83 (286)
+....+.++..++|+.+...+ ...+.+|+|+||+.+.. .....+.++++||+||+|++.. ..+..++..+
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~ 249 (510)
T 2oca_A 180 YRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGL 249 (510)
T ss_dssp TTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGC
T ss_pred hhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhc
Confidence 334455788889988776554 45678999999996543 3334567789999999998754 4466777777
Q ss_pred CcCccEEEEEeecChhHHHHH--HHhcCCCeEEEecCCc------cccccceeEEEEccch-------------------
Q 023157 84 PAKVQVGVFSATMPPEALEIT--RKFMNKPVRILVKRDE------LTLEGIKQFYVNVEKE------------------- 136 (286)
Q Consensus 84 ~~~~~~i~~SAT~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~------------------- 136 (286)
....+++++||||++...... ....+ +......... ..+..+.......+..
T Consensus 250 ~~~~~~l~lSATp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (510)
T 2oca_A 250 NNCMFKFGLSGSLRDGKANIMQYVGMFG-EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITG 328 (510)
T ss_dssp TTCCEEEEEESCGGGCSSCHHHHHHHHC-SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHT
T ss_pred ccCcEEEEEEeCCCCCcccHHHhHHhhC-CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhc
Confidence 778899999999965532211 11221 2111111110 0011111111111110
Q ss_pred -hhHHHHHHHHHhhc---cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEe-cC
Q 023157 137 -EWKLETLCDLYETL---AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT-DL 211 (286)
Q Consensus 137 -~~~~~~l~~~~~~~---~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T-~~ 211 (286)
..+...+..++... .+.+++||++ ..+++.+++.|.+.+..+..+||+++..+|.++++.|++|+.+||||| ++
T Consensus 329 ~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~ 407 (510)
T 2oca_A 329 LSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGV 407 (510)
T ss_dssp CHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcCh
Confidence 11233344444433 3445566665 899999999999988899999999999999999999999999999999 99
Q ss_pred CccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEe
Q 023157 212 LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 256 (286)
Q Consensus 212 ~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~ 256 (286)
+++|+|+|++++||++++|+|..+|.|++||+||.|.++..++++
T Consensus 408 ~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~ 452 (510)
T 2oca_A 408 FSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVW 452 (510)
T ss_dssp HHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEE
T ss_pred hhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEE
Confidence 999999999999999999999999999999999998776433333
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=4.2e-31 Score=256.16 Aligned_cols=259 Identities=17% Similarity=0.297 Sum_probs=183.7
Q ss_pred cccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCC--CCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 4 LGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS--LRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 4 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
..+.+|++|..++|+.+...+. ..+++|+|||||++..++++.. ..++++++||+||+|.+.+ ..+..+..++.
T Consensus 157 ~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~ 232 (1724)
T 4f92_B 157 RLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVA 232 (1724)
T ss_dssp HHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHH
T ss_pred HHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHH
Confidence 3456799999999998765432 2468999999999976665532 2367799999999997755 45555544332
Q ss_pred -------hCCcCccEEEEEeecChhHHHHHHHhcCCC-eEEEecCCccccccceeEEEEccchh--hHHHHHH-----HH
Q 023157 82 -------LLPAKVQVGVFSATMPPEALEITRKFMNKP-VRILVKRDELTLEGIKQFYVNVEKEE--WKLETLC-----DL 146 (286)
Q Consensus 82 -------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~l~-----~~ 146 (286)
..+.++|++++|||+++ ..++.+++...+ ........+..+..+.+.+....... .....+. .+
T Consensus 233 rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v 311 (1724)
T 4f92_B 233 RAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKI 311 (1724)
T ss_dssp HHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHH
Confidence 34678999999999974 345554443321 11222222333344454443333221 1222222 22
Q ss_pred HhhccCcceEEEecchhhHHHHHHHHhcC-------------------------------------CCeeEEecCCCCHH
Q 023157 147 YETLAITQSVIFVNTRRKVDWLTDKMRSR-------------------------------------DHTVSATHGDMDQN 189 (286)
Q Consensus 147 ~~~~~~~~~ivf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~~~ 189 (286)
.+...++++||||++++.|+.+++.|.+. ..+++.+||+|+.+
T Consensus 312 ~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~ 391 (1724)
T 4f92_B 312 MEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRV 391 (1724)
T ss_dssp TTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTH
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHH
Confidence 23345679999999999999988877431 13589999999999
Q ss_pred HHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEE----ccC------CCCcchhhhhhcccccCCC--cceEEEEec
Q 023157 190 TRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL------PTQPENYLHRIGRSGRFGR--KGVAINFVT 257 (286)
Q Consensus 190 ~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~----~~~------~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~ 257 (286)
+|..+.+.|++|..+|||||++++.|+|+|..++||. +++ |.++.+|.||+|||||.|. .|.+++++.
T Consensus 392 ~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~ 471 (1724)
T 4f92_B 392 DRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITS 471 (1724)
T ss_dssp HHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEec
Confidence 9999999999999999999999999999999998884 443 4689999999999999874 589999998
Q ss_pred cCcHHHHHHH
Q 023157 258 RDDERMLFDI 267 (286)
Q Consensus 258 ~~~~~~~~~~ 267 (286)
..+...+..+
T Consensus 472 ~~~~~~~~~l 481 (1724)
T 4f92_B 472 HGELQYYLSL 481 (1724)
T ss_dssp STTCCHHHHH
T ss_pred chhHHHHHHH
Confidence 8876665554
No 46
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.97 E-value=2.6e-29 Score=195.62 Aligned_cols=154 Identities=30% Similarity=0.520 Sum_probs=140.4
Q ss_pred ceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcE
Q 023157 126 IKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRV 205 (286)
Q Consensus 126 i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 205 (286)
+.+....++... |...+..++...+++++||||+++.+++.+++.|...++.+..+||++++.+|..+++.|++|+.+|
T Consensus 6 ~~~~~~~~~~~~-k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 6 YEEEAVPAPVRG-RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp BCCEEEECCTTS-HHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred eeeeEEeCCHHH-HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 344555555444 9999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCc
Q 023157 206 LITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 280 (286)
Q Consensus 206 lv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (286)
||||+++++|+|+|++++||++++|++...|.||+||+||.|++|.+++++++.+...+..+++.++..++.++.
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 159 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 159 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCC
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999888777653
No 47
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.97 E-value=3.4e-30 Score=227.81 Aligned_cols=232 Identities=20% Similarity=0.242 Sum_probs=166.8
Q ss_pred ccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCC
Q 023157 5 GDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP 84 (286)
Q Consensus 5 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~ 84 (286)
.+.++..+...+|+.. ...+++|+|+||++| +.+..+.+.++++||+||+|+ .+.++...+..+++..+
T Consensus 278 ~~~~g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~ 346 (666)
T 3o8b_A 278 SKAHGIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAE 346 (666)
T ss_dssp HHHHSCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTT
T ss_pred HHHhCCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhh
Confidence 3445666666777644 345789999999997 455667788899999999985 45566777888888887
Q ss_pred cCcc--EEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecch
Q 023157 85 AKVQ--VGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTR 162 (286)
Q Consensus 85 ~~~~--~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~ 162 (286)
...+ ++++|||+++... ...+.......... ..+ ....... . +....++++||||+++
T Consensus 347 ~~~~~llil~SAT~~~~i~------~~~p~i~~v~~~~~--~~i----~~~~~~~-~-------l~~~~~~~vLVFv~Tr 406 (666)
T 3o8b_A 347 TAGARLVVLATATPPGSVT------VPHPNIEEVALSNT--GEI----PFYGKAI-P-------IEAIRGGRHLIFCHSK 406 (666)
T ss_dssp TTTCSEEEEEESSCTTCCC------CCCTTEEEEECBSC--SSE----EETTEEE-C-------GGGSSSSEEEEECSCH
T ss_pred hcCCceEEEECCCCCcccc------cCCcceEEEeeccc--chh----HHHHhhh-h-------hhhccCCcEEEEeCCH
Confidence 6555 7888999986311 11111111110000 000 0000000 0 1233568999999999
Q ss_pred hhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEE----------cc----
Q 023157 163 RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----------YD---- 228 (286)
Q Consensus 163 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~----------~~---- 228 (286)
+.++.+++.|++.++.+..+||++++++ |.++..+|||||+++++|+|+| +++||+ +|
T Consensus 407 ~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~ 478 (666)
T 3o8b_A 407 KKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPT 478 (666)
T ss_dssp HHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSS
T ss_pred HHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccc
Confidence 9999999999999999999999999875 4566679999999999999997 999994 44
Q ss_pred -------CCCCcchhhhhhcccccCCCcceEEEEeccCcHHH--H--HHHHHHhchhccc
Q 023157 229 -------LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERM--L--FDIQKFYNVVIEE 277 (286)
Q Consensus 229 -------~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~--~--~~~~~~~~~~~~~ 277 (286)
.|.+..+|+||+||+|| +.+|. +.++++.+... + ..+++..+..+.+
T Consensus 479 ~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~~~~~ 536 (666)
T 3o8b_A 479 FTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDAGCAW 536 (666)
T ss_dssp CEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHHHHHT
T ss_pred cccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcCCccc
Confidence 78999999999999999 88999 89988876554 3 5565555554443
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=2.7e-32 Score=234.90 Aligned_cols=207 Identities=14% Similarity=0.130 Sum_probs=142.1
Q ss_pred CCCCCccEEEEehhhHhhccccHHHHHHHHHhC-CcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeE
Q 023157 51 LRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF 129 (286)
Q Consensus 51 ~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 129 (286)
..+.++++||+||+|++ +.++...+..+.... +.+.|+++||||+++....+... ..+... .
T Consensus 95 ~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~--~~~~~~--------------~ 157 (440)
T 1yks_A 95 TRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPHS--NGEIED--------------V 157 (440)
T ss_dssp SCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEE--------------E
T ss_pred ccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhhc--CCCeeE--------------e
Confidence 34788999999999987 333332222222222 35789999999998764322111 011100 0
Q ss_pred EEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEe
Q 023157 130 YVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT 209 (286)
Q Consensus 130 ~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T 209 (286)
...++... ....+..+.+ .+++++|||++++.++.+++.|+..++.+..+|| ++|..+++.|++|+.+|||||
T Consensus 158 ~~~~~~~~-~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT 230 (440)
T 1yks_A 158 QTDIPSEP-WNTGHDWILA--DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILAT 230 (440)
T ss_dssp ECCCCSSC-CSSSCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCSEEEES
T ss_pred eeccChHH-HHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEEC
Confidence 00111110 0011111111 2579999999999999999999999999999999 457899999999999999999
Q ss_pred cCCccCCCCCCCcEEEE-------------------ccCCCCcchhhhhhcccccC-CCcceEEEEe---ccCcHHHHHH
Q 023157 210 DLLARGIDVQQVSLVIN-------------------YDLPTQPENYLHRIGRSGRF-GRKGVAINFV---TRDDERMLFD 266 (286)
Q Consensus 210 ~~~~~Gidi~~~~~vi~-------------------~~~~~s~~~~~Q~~GR~~R~-~~~g~~~~~~---~~~~~~~~~~ 266 (286)
+++++|+|+| +++||+ ++.|.+..+|.||+||+||. +..|.+++++ ++.+...+..
T Consensus 231 ~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~ 309 (440)
T 1yks_A 231 DIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCW 309 (440)
T ss_dssp SSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHH
T ss_pred ChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhh
Confidence 9999999999 999986 78899999999999999997 6789999996 6778888888
Q ss_pred HHHHhchhcccCCcch
Q 023157 267 IQKFYNVVIEELPSNV 282 (286)
Q Consensus 267 ~~~~~~~~~~~~~~~l 282 (286)
+++.+.....++|..+
T Consensus 310 l~~~~~~~~~~l~~~~ 325 (440)
T 1yks_A 310 LEASMLLDNMEVRGGM 325 (440)
T ss_dssp HHHHHHHTTSCCGGGC
T ss_pred hhHHhccccccccccc
Confidence 8877766656665543
No 49
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.97 E-value=1.5e-29 Score=225.44 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=111.2
Q ss_pred hhhHHHHHHHHHhh--ccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCc
Q 023157 136 EEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA 213 (286)
Q Consensus 136 ~~~~~~~l~~~~~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 213 (286)
...|...+...+.. ..+.++||||+|+..++.+++.|+..|+.+..+||++...++..+.+.|+.| .|+|||++++
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAg 500 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAG 500 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEeccccc
Confidence 34578888777754 3567999999999999999999999999999999999888888888888888 6999999999
Q ss_pred cCCCCCCC-------------------------------------cEEEEccCCCCcchhhhhhcccccCCCcceEEEEe
Q 023157 214 RGIDVQQV-------------------------------------SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 256 (286)
Q Consensus 214 ~Gidi~~~-------------------------------------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~ 256 (286)
+|+|++.. .+||.++.|.|.+.|.||.||+||.|.+|.+..|+
T Consensus 501 RGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fl 580 (853)
T 2fsf_A 501 RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYL 580 (853)
T ss_dssp SCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEe
Confidence 99999974 59999999999999999999999999999999999
Q ss_pred ccCcH
Q 023157 257 TRDDE 261 (286)
Q Consensus 257 ~~~~~ 261 (286)
+..|.
T Consensus 581 s~eD~ 585 (853)
T 2fsf_A 581 SMEDA 585 (853)
T ss_dssp ETTSG
T ss_pred cccHH
Confidence 88764
No 50
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.96 E-value=5.6e-30 Score=233.26 Aligned_cols=222 Identities=16% Similarity=0.260 Sum_probs=169.3
Q ss_pred CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhH-hhc-cccHHHHHHHHHhCCcCccEEEEEeecChhHHHHHHHhc
Q 023157 31 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADE-MLS-RGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITRKFM 108 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~-~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 108 (286)
..+|+++||+++.+.+... ..+.++++||+||+|. ..+ ......+..+.... ++.+++++|||++.. .+ ..++
T Consensus 185 ~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~--~l-~~~~ 259 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE--KF-QRYF 259 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH--HH-HHHT
T ss_pred CCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH--HH-HHHh
Confidence 5789999999999877664 3578899999999996 333 22234455555554 478999999999653 33 3444
Q ss_pred CCCeEEEecCCccccccceeEEEEccchhh---HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhc-----------
Q 023157 109 NKPVRILVKRDELTLEGIKQFYVNVEKEEW---KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS----------- 174 (286)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~----------- 174 (286)
.....+...... ..+..++...+.... ....+..+.....++++|||++++.+++.+++.|.+
T Consensus 260 ~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~ 336 (773)
T 2xau_A 260 NDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGC 336 (773)
T ss_dssp TSCCEEECCCCC---CCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCcccccCcc---cceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccC
Confidence 444334333222 224444433333322 234444555555678999999999999999999975
Q ss_pred CCCeeEEecCCCCHHHHHHHHHHhh-----cCCCcEEEEecCCccCCCCCCCcEEEEccC------------------CC
Q 023157 175 RDHTVSATHGDMDQNTRDIIMREFR-----SGSSRVLITTDLLARGIDVQQVSLVINYDL------------------PT 231 (286)
Q Consensus 175 ~~~~~~~~~~~~~~~~r~~~~~~f~-----~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~------------------~~ 231 (286)
.++.+..+||+++.++|..+++.|. +|+.+|||||+++++|+|+|++++||++|. |.
T Consensus 337 ~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~ 416 (773)
T 2xau_A 337 GPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPI 416 (773)
T ss_dssp CCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEEC
T ss_pred CCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccC
Confidence 5788999999999999999999999 999999999999999999999999999887 88
Q ss_pred CcchhhhhhcccccCCCcceEEEEeccCcH
Q 023157 232 QPENYLHRIGRSGRFGRKGVAINFVTRDDE 261 (286)
Q Consensus 232 s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 261 (286)
|..+|.||+||+||. .+|.|+.++++.+.
T Consensus 417 S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 417 SKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp CHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred CHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 999999999999998 78999999976543
No 51
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.96 E-value=3.5e-28 Score=217.10 Aligned_cols=256 Identities=20% Similarity=0.276 Sum_probs=189.3
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHH-HHHHhcC------CCCCCCccEEEEehhhHhh-cc---
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQ------SLRPDYIKMFVLDEADEML-SR--- 70 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l-~~~~~~~------~~~~~~~~~iIiDE~h~~~-~~--- 70 (286)
+.+.+++|+++..++||.+...+...+ +++|+++||+.| +++++.+ .+.+..+.++|+||+|.++ +.
T Consensus 173 ~~l~~~lGLsv~~i~gg~~~~~r~~~y--~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeart 250 (922)
T 1nkt_A 173 GRVHRFLGLQVGVILATMTPDERRVAY--NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEART 250 (922)
T ss_dssp HHHHHHTTCCEEECCTTCCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGS
T ss_pred HHHHhhcCCeEEEEeCCCCHHHHHHhc--CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcc
Confidence 467788999999999998865444433 589999999999 7777654 3566789999999999987 32
Q ss_pred ------------ccHHHHHHHHHhCC---------cCccEE-----------------EEEeecChhHHHHH-----HHh
Q 023157 71 ------------GFKDQIYDIFQLLP---------AKVQVG-----------------VFSATMPPEALEIT-----RKF 107 (286)
Q Consensus 71 ------------~~~~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~~~~~~~-----~~~ 107 (286)
++...+..+...++ +..++. ++|||.++-...+. ..+
T Consensus 251 PLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l 330 (922)
T 1nkt_A 251 PLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKEL 330 (922)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHH
T ss_pred ceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHH
Confidence 46788888888887 456666 77888764222211 111
Q ss_pred cCC--------CeEEEec-----------------------------CCccccccce-----------------------
Q 023157 108 MNK--------PVRILVK-----------------------------RDELTLEGIK----------------------- 127 (286)
Q Consensus 108 ~~~--------~~~~~~~-----------------------------~~~~~~~~i~----------------------- 127 (286)
+.. ...+.+. ........+.
T Consensus 331 ~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~ 410 (922)
T 1nkt_A 331 FSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAA 410 (922)
T ss_dssp CCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHH
Confidence 111 0000000 0000000011
Q ss_pred ------------------------eEEEEccchhhHHHHHHHHHhh--ccCcceEEEecchhhHHHHHHHHhcCCCeeEE
Q 023157 128 ------------------------QFYVNVEKEEWKLETLCDLYET--LAITQSVIFVNTRRKVDWLTDKMRSRDHTVSA 181 (286)
Q Consensus 128 ------------------------~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~ 181 (286)
....... ...|...+...+.. ..+.++||||+|+..++.+++.|+..|+.+..
T Consensus 411 Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t-~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~v 489 (922)
T 1nkt_A 411 ELHEIYKLGVVSIPTNMPMIREDQSDLIYKT-EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNV 489 (922)
T ss_dssp HHHHHHCCEEEECCCSSCCCCEECCCEEESC-HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHhCCCeEEeCCCCCcccccCCcEEEeC-HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEE
Confidence 1123333 34477777776653 25678999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCC----------------------------------------
Q 023157 182 THGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV---------------------------------------- 221 (286)
Q Consensus 182 ~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~---------------------------------------- 221 (286)
+|++....++..+.+.++.| .|+|||+++++|+|++..
T Consensus 490 Lnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (922)
T 1nkt_A 490 LNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEA 567 (922)
T ss_dssp ECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred ecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 99998877877777888877 699999999999999975
Q ss_pred ------------cEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHH
Q 023157 222 ------------SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDER 262 (286)
Q Consensus 222 ------------~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 262 (286)
.+||.++.|.|.+.|.||.||+||.|.+|.+..|++..|.-
T Consensus 568 ~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 568 SKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp THHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred HHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 49999999999999999999999999999999999887653
No 52
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=4.7e-30 Score=223.88 Aligned_cols=233 Identities=19% Similarity=0.273 Sum_probs=166.1
Q ss_pred cccccCce-EEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 4 LGDYLGVK-VHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 4 ~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
+.+ ++++ +..++|+... ..+|+|+||+.+...+.. ...++++||+||+|++.+..+.. ++..
T Consensus 153 ~~~-~~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~ 215 (472)
T 2fwr_A 153 LGI-FGEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQM 215 (472)
T ss_dssp GGG-GCGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHT
T ss_pred HHh-CCCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHh
Confidence 444 6888 8888887653 478999999998776542 12347999999999988777553 4444
Q ss_pred CCcCccEEEEEeecChh-------------------HHHHHHHhcCCCeE--EEecCCcc--------------------
Q 023157 83 LPAKVQVGVFSATMPPE-------------------ALEITRKFMNKPVR--ILVKRDEL-------------------- 121 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~-------------------~~~~~~~~~~~~~~--~~~~~~~~-------------------- 121 (286)
+ ...+++++||||... ...+...++..+.. +.......
T Consensus 216 ~-~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (472)
T 2fwr_A 216 S-IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARG 294 (472)
T ss_dssp C-CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCC
T ss_pred c-CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 467899999999732 11111111111110 10100000
Q ss_pred ----ccccceeEEEE--------------------ccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCC
Q 023157 122 ----TLEGIKQFYVN--------------------VEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDH 177 (286)
Q Consensus 122 ----~~~~i~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~ 177 (286)
....+...+.. ......+...+..++....+.++||||++...++.+++.|.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~---- 370 (472)
T 2fwr_A 295 ITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL---- 370 (472)
T ss_dssp CTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT----
T ss_pred ccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC----
Confidence 00000000000 00112366778888887788999999999999999999983
Q ss_pred eeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCc---ceEEE
Q 023157 178 TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK---GVAIN 254 (286)
Q Consensus 178 ~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~---g~~~~ 254 (286)
+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|+|+..|.||+||+||.|+. ..++.
T Consensus 371 -~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~ 449 (472)
T 2fwr_A 371 -IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYE 449 (472)
T ss_dssp -CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEE
T ss_pred -cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEE
Confidence 66799999999999999999999999999999999999999999999999999999999999999999754 34555
Q ss_pred EeccC
Q 023157 255 FVTRD 259 (286)
Q Consensus 255 ~~~~~ 259 (286)
+++..
T Consensus 450 lv~~~ 454 (472)
T 2fwr_A 450 LISRG 454 (472)
T ss_dssp EEECS
T ss_pred EEeCC
Confidence 66654
No 53
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=2.2e-28 Score=198.97 Aligned_cols=155 Identities=30% Similarity=0.518 Sum_probs=140.1
Q ss_pred cceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCc
Q 023157 125 GIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR 204 (286)
Q Consensus 125 ~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 204 (286)
.+.+++..++... |...+..+++...++++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+
T Consensus 2 ~v~~~~i~~~~~~-K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRG-RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSS-HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHH-HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 3567777777655 999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCCc
Q 023157 205 VLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPS 280 (286)
Q Consensus 205 vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (286)
|||||+++++|+|+|++++||+++.|++...|.||+||+||.|++|.+++++++.+...+..+++.++..++.++.
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~ 156 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNP 156 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCC
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888776654
No 54
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.96 E-value=2.2e-29 Score=224.06 Aligned_cols=224 Identities=17% Similarity=0.105 Sum_probs=164.5
Q ss_pred CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCC-cCccEEEEEeecChhHHHHHHHhcC
Q 023157 31 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGVFSATMPPEALEITRKFMN 109 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~~~ 109 (286)
+..+.++|.+.+.+.+... ..++++++||+||||++ +.++...+..+....+ .+.|+++||||++.....+.. .
T Consensus 254 ~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~ 328 (618)
T 2whx_A 254 REIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---S 328 (618)
T ss_dssp SSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---C
T ss_pred CceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---c
Confidence 3456677777777655544 35788999999999987 5555666666666554 578999999999865432111 1
Q ss_pred CCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHH
Q 023157 110 KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQN 189 (286)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 189 (286)
++..+..... . +.. +...+...+.. ..+++||||+++++++.+++.|+..+..+..+|++
T Consensus 329 ~~~~~~v~~~-~------------~~~--~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~---- 388 (618)
T 2whx_A 329 NSPIEDIERE-I------------PER--SWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK---- 388 (618)
T ss_dssp SSCEEEEECC-C------------CSS--CCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----
T ss_pred CCceeeeccc-C------------CHH--HHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----
Confidence 2222222111 0 000 00011111222 25799999999999999999999999999999984
Q ss_pred HHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEE--------------------EEccCCCCcchhhhhhcccccCCC-
Q 023157 190 TRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV--------------------INYDLPTQPENYLHRIGRSGRFGR- 248 (286)
Q Consensus 190 ~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~v--------------------i~~~~~~s~~~~~Q~~GR~~R~~~- 248 (286)
+|.++++.|++|+.+|||||+++++|+|+| +++| ++++.|.|..+|+||+||+||.|.
T Consensus 389 ~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~ 467 (618)
T 2whx_A 389 TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 467 (618)
T ss_dssp THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCC
Confidence 678899999999999999999999999997 8988 666779999999999999999964
Q ss_pred cceEEEEec---cCcHHHHHHHHHHhchhcccCCc
Q 023157 249 KGVAINFVT---RDDERMLFDIQKFYNVVIEELPS 280 (286)
Q Consensus 249 ~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 280 (286)
.|.+++++. +.+...+..+++.+..+...+|.
T Consensus 468 ~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 468 EDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp CCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred CCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 899999997 77888888888876654444443
No 55
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.96 E-value=8.2e-29 Score=231.06 Aligned_cols=134 Identities=19% Similarity=0.251 Sum_probs=117.6
Q ss_pred hHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhc-CCCeeEEecCCCCHHHHHHHHHHhhcCC--CcEEEEecCCcc
Q 023157 138 WKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRS-RDHTVSATHGDMDQNTRDIIMREFRSGS--SRVLITTDLLAR 214 (286)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~~~~~ 214 (286)
.|...+..++...++.++||||+++.+++.+++.|.. .|+.+..+||+++..+|..+++.|++|+ .+|||||+++++
T Consensus 489 ~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~ 568 (968)
T 3dmq_A 489 PRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSE 568 (968)
T ss_dssp HHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhc
Confidence 4778888888887889999999999999999999995 5999999999999999999999999998 999999999999
Q ss_pred CCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHh
Q 023157 215 GIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFY 271 (286)
Q Consensus 215 Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (286)
|+|+|++++||++++|+++..|.|++||+||.|+.+.++++....+......+.+.+
T Consensus 569 GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 569 GRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp SSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred CCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 999999999999999999999999999999999888766655444333334444444
No 56
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.92 E-value=1.5e-30 Score=196.00 Aligned_cols=156 Identities=34% Similarity=0.557 Sum_probs=143.8
Q ss_pred ccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCC
Q 023157 124 EGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS 203 (286)
Q Consensus 124 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 203 (286)
.++.+.+..++....|...+..+++..++.++||||+++..++.+++.|+..++.+..+||++++.+|..+++.|++|+.
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 35667777777645588889898888777899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhcccCC
Q 023157 204 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELP 279 (286)
Q Consensus 204 ~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (286)
+|||||+++++|+|+|++++||++++|++...|.||+||+||.|+.|.+++++...+...+..+++.++..++..+
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARV 157 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888876654
No 57
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.95 E-value=2.6e-28 Score=210.91 Aligned_cols=203 Identities=16% Similarity=0.107 Sum_probs=148.5
Q ss_pred CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHH-hCCcCccEEEEEeecChhHHHHHHHhcC
Q 023157 31 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ-LLPAKVQVGVFSATMPPEALEITRKFMN 109 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~-~~~~~~~~i~~SAT~~~~~~~~~~~~~~ 109 (286)
+..|.++|++.+.+.+.+. ..+.++++||+||+|++ +..+......+.. ..+++.|+++||||+++..... +..
T Consensus 87 ~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~---~~~ 161 (451)
T 2jlq_A 87 REIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPF---PQS 161 (451)
T ss_dssp SCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS---CCC
T ss_pred CceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCccchhh---hcC
Confidence 4578899999998877654 45778999999999976 3332332222222 2345789999999998643221 222
Q ss_pred CCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHH
Q 023157 110 KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQN 189 (286)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 189 (286)
.+..+..... .... .+ .... ..+.. ..+++||||+++++++.+++.|++.++.+..+|+++.
T Consensus 162 ~~~~~~~~~~-~p~~---~~-------~~~~----~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~-- 223 (451)
T 2jlq_A 162 NSPIEDIERE-IPER---SW-------NTGF----DWITD-YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF-- 223 (451)
T ss_dssp SSCEEEEECC-CCSS---CC-------SSSC----HHHHH-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH--
T ss_pred CCceEecCcc-CCch---hh-------HHHH----HHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH--
Confidence 2222222211 0000 00 0011 11222 2469999999999999999999999999999999764
Q ss_pred HHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEcc--------------------CCCCcchhhhhhcccccCCC-
Q 023157 190 TRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYD--------------------LPTQPENYLHRIGRSGRFGR- 248 (286)
Q Consensus 190 ~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~--------------------~~~s~~~~~Q~~GR~~R~~~- 248 (286)
..+++.|++|+.+|||||+++++|+|+|+ ++||++| .|.|..+|+||+||+||.|.
T Consensus 224 --~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~ 300 (451)
T 2jlq_A 224 --DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 300 (451)
T ss_dssp --HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred --HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC
Confidence 57899999999999999999999999999 9999988 89999999999999999987
Q ss_pred cceEEEEeccC
Q 023157 249 KGVAINFVTRD 259 (286)
Q Consensus 249 ~g~~~~~~~~~ 259 (286)
+|.+++++...
T Consensus 301 ~g~~~~~~~~~ 311 (451)
T 2jlq_A 301 EDDQYVFSGDP 311 (451)
T ss_dssp CCEEEEECSCC
T ss_pred CccEEEEeCCc
Confidence 78888887543
No 58
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.95 E-value=3.6e-28 Score=217.64 Aligned_cols=203 Identities=18% Similarity=0.170 Sum_probs=144.3
Q ss_pred CCCCCccEEEEehhhHhhccccHHHHHHHHHhC-CcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeE
Q 023157 51 LRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQF 129 (286)
Q Consensus 51 ~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 129 (286)
..+.++++||+||+|++ +..+...+..+.... +...|+++||||+++....+... ..+. ...
T Consensus 328 ~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i--------------~~v 390 (673)
T 2wv9_A 328 LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPV--------------HDV 390 (673)
T ss_dssp SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE--------------EEE
T ss_pred cccccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCce--------------EEE
Confidence 35778999999999987 222222333333333 25789999999998653221110 0111 100
Q ss_pred EEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEe
Q 023157 130 YVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT 209 (286)
Q Consensus 130 ~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T 209 (286)
....+... ....+..+.+ .++++||||+++++++.+++.|+..++.+..+||+ +|.++++.|++|+.+|||||
T Consensus 391 ~~~~~~~~-~~~~l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaT 463 (673)
T 2wv9_A 391 SSEIPDRA-WSSGFEWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITT 463 (673)
T ss_dssp ECCCCSSC-CSSCCHHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEEC
T ss_pred eeecCHHH-HHHHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEEC
Confidence 00011100 0111111222 46799999999999999999999999999999993 78899999999999999999
Q ss_pred cCCccCCCCCCCcEEEE--------------------ccCCCCcchhhhhhcccccC-CCcceEEEEe---ccCcHHHHH
Q 023157 210 DLLARGIDVQQVSLVIN--------------------YDLPTQPENYLHRIGRSGRF-GRKGVAINFV---TRDDERMLF 265 (286)
Q Consensus 210 ~~~~~Gidi~~~~~vi~--------------------~~~~~s~~~~~Q~~GR~~R~-~~~g~~~~~~---~~~~~~~~~ 265 (286)
+++++|+|+| +++||+ ++.|.+..+|.||+||+||. ++.|.+++++ ++.+...+.
T Consensus 464 dv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~ 542 (673)
T 2wv9_A 464 DISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAH 542 (673)
T ss_dssp GGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHH
T ss_pred chhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHH
Confidence 9999999999 999997 56789999999999999998 7889999996 566766777
Q ss_pred HHHHHhchhcccC
Q 023157 266 DIQKFYNVVIEEL 278 (286)
Q Consensus 266 ~~~~~~~~~~~~~ 278 (286)
.++..+.....++
T Consensus 543 ~ie~~~~l~~~~~ 555 (673)
T 2wv9_A 543 WTEAKILLDNIHL 555 (673)
T ss_dssp HHHHHHHHHTSCB
T ss_pred HHHHHHhhhhccC
Confidence 7776654433333
No 59
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.95 E-value=1e-27 Score=205.97 Aligned_cols=200 Identities=15% Similarity=0.116 Sum_probs=141.1
Q ss_pred CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhC-CcCccEEEEEeecChhHHHHHHHhcC
Q 023157 31 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLL-PAKVQVGVFSATMPPEALEITRKFMN 109 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~ 109 (286)
+..+.++|.+.+.+.+.. ...+.++++||+||+|++ ...+......+.... +.++++++||||+++....+... .
T Consensus 70 ~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~--~ 145 (431)
T 2v6i_A 70 NEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS--N 145 (431)
T ss_dssp CCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC--S
T ss_pred CceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC--C
Confidence 456777888888776665 456788999999999986 322233333333332 45799999999998642211100 0
Q ss_pred CCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHH
Q 023157 110 KPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQN 189 (286)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 189 (286)
.+. .......+.. +...+...+.. .+++++|||+++++++.+++.|+..+..+..+||+
T Consensus 146 ~~i--------------~~~~~~~~~~--~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~---- 204 (431)
T 2v6i_A 146 SPI--------------IDEETRIPDK--AWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK---- 204 (431)
T ss_dssp SCC--------------EEEECCCCSS--CCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----
T ss_pred Cce--------------eeccccCCHH--HHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----
Confidence 111 0000000100 11111122332 25689999999999999999999999999999997
Q ss_pred HHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcE-----------------EEEccCCCCcchhhhhhcccccCCC-cce
Q 023157 190 TRDIIMREFRSGSSRVLITTDLLARGIDVQQVSL-----------------VINYDLPTQPENYLHRIGRSGRFGR-KGV 251 (286)
Q Consensus 190 ~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~-----------------vi~~~~~~s~~~~~Q~~GR~~R~~~-~g~ 251 (286)
+|.++++.|++|+.+|||||+++++|+|+| +.+ |++++.|.+..+|.||+||+||.|. .|.
T Consensus 205 ~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~ 283 (431)
T 2v6i_A 205 TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGD 283 (431)
T ss_dssp THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCC
T ss_pred cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCe
Confidence 577899999999999999999999999999 655 5677889999999999999999975 455
Q ss_pred EEEEe
Q 023157 252 AINFV 256 (286)
Q Consensus 252 ~~~~~ 256 (286)
++++.
T Consensus 284 ~~~~~ 288 (431)
T 2v6i_A 284 IYAYS 288 (431)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 56655
No 60
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.95 E-value=3e-27 Score=211.21 Aligned_cols=240 Identities=18% Similarity=0.215 Sum_probs=170.1
Q ss_pred cCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCC-cC
Q 023157 8 LGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLP-AK 86 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~-~~ 86 (286)
.|+++..++|+..... ..-.+..+++++|++.+. ....++++|+||+|++.+.+++..+..++...+ ..
T Consensus 202 ~g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~ 271 (677)
T 3rc3_A 202 AGVPCDLVTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEE 271 (677)
T ss_dssp TTCCEEEECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEE
T ss_pred cCCcEEEEECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccc
Confidence 4788888998865410 000113678888876542 245679999999999988888988888888877 67
Q ss_pred ccEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHH
Q 023157 87 VQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVD 166 (286)
Q Consensus 87 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~ 166 (286)
.+++++|||. +....+... ......+........ .. . ... .+ ..+.... ...+|||++++.++
T Consensus 272 i~il~~SAT~-~~i~~l~~~-~~~~~~v~~~~r~~~---l~---~-~~~---~l----~~l~~~~-~g~iIf~~s~~~ie 334 (677)
T 3rc3_A 272 VHLCGEPAAI-DLVMELMYT-TGEEVEVRDYKRLTP---IS---V-LDH---AL----ESLDNLR-PGDCIVCFSKNDIY 334 (677)
T ss_dssp EEEEECGGGH-HHHHHHHHH-HTCCEEEEECCCSSC---EE---E-CSS---CC----CSGGGCC-TTEEEECSSHHHHH
T ss_pred eEEEeccchH-HHHHHHHHh-cCCceEEEEeeecch---HH---H-HHH---HH----HHHHhcC-CCCEEEEcCHHHHH
Confidence 8899999995 233333332 233333322211110 00 0 000 00 0111122 35588999999999
Q ss_pred HHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc--CCCcEEEEecCCccCCCCCCCcEEEEccC--------------C
Q 023157 167 WLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS--GSSRVLITTDLLARGIDVQQVSLVINYDL--------------P 230 (286)
Q Consensus 167 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gidi~~~~~vi~~~~--------------~ 230 (286)
.+++.|++.+..+..+||+|++++|..+++.|++ |+.+|||||+++++|+|+ ++++||+++. |
T Consensus 335 ~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p 413 (677)
T 3rc3_A 335 SVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEP 413 (677)
T ss_dssp HHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CB
T ss_pred HHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCcccccc
Confidence 9999999999999999999999999999999998 889999999999999999 8999999998 7
Q ss_pred CCcchhhhhhcccccCCCc---ceEEEEeccCcHHHHHHHHHHhchhcc
Q 023157 231 TQPENYLHRIGRSGRFGRK---GVAINFVTRDDERMLFDIQKFYNVVIE 276 (286)
Q Consensus 231 ~s~~~~~Q~~GR~~R~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (286)
.|..+|.||+||+||.|.. |.|+.++. .+...+.++......+++
T Consensus 414 ~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~-~d~~~~~~~~~~~~~~i~ 461 (677)
T 3rc3_A 414 ITTSQALQIAGRAGRFSSRFKEGEVTTMNH-EDLSLLKEILKRPVDPIR 461 (677)
T ss_dssp CCHHHHHHHHTTBTCTTSSCSSEEEEESST-THHHHHHHHHHSCCCCCC
T ss_pred CCHHHHHHHhcCCCCCCCCCCCEEEEEEec-chHHHHHHHHhcCcchhh
Confidence 7899999999999999864 56555543 344444455444443333
No 61
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=9e-28 Score=214.80 Aligned_cols=226 Identities=14% Similarity=0.198 Sum_probs=142.7
Q ss_pred CCCcEEEeCcHHHHHHHhc----CCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecChhHHHHHH
Q 023157 30 AGVHVVVGTPGRVFDMLRR----QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITR 105 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~----~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 105 (286)
.+.+|+|+||+++...... ..+....+++||+||||++.... ...+..++..++ +.+++++||||.........
T Consensus 273 ~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~-~~~~l~lTATP~~~~~~~~~ 350 (590)
T 3h1t_A 273 KSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE-PAFQIGMTATPLREDNRDTY 350 (590)
T ss_dssp SSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHST-TSEEEEEESSCSCTTTHHHH
T ss_pred CCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC-cceEEEeccccccccchhHH
Confidence 4689999999999887542 23445678999999999986542 245566667765 57899999999854433333
Q ss_pred HhcCCCeEEEe-----------------cCCccccc--------------cceeEEEEccchh----------hHHHHHH
Q 023157 106 KFMNKPVRILV-----------------KRDELTLE--------------GIKQFYVNVEKEE----------WKLETLC 144 (286)
Q Consensus 106 ~~~~~~~~~~~-----------------~~~~~~~~--------------~i~~~~~~~~~~~----------~~~~~l~ 144 (286)
.+++.+..... ........ .+....+...... .....+.
T Consensus 351 ~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~ 430 (590)
T 3h1t_A 351 RYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLT 430 (590)
T ss_dssp HHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHH
T ss_pred HHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHH
Confidence 33333221110 00000000 0000000000000 0112233
Q ss_pred HHHhh-ccCcceEEEecchhhHHHHHHHHhcCCC--------eeEEecCCCCHHHHHHHHHHhhcCCCc---EEEEecCC
Q 023157 145 DLYET-LAITQSVIFVNTRRKVDWLTDKMRSRDH--------TVSATHGDMDQNTRDIIMREFRSGSSR---VLITTDLL 212 (286)
Q Consensus 145 ~~~~~-~~~~~~ivf~~~~~~~~~l~~~l~~~~~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~ 212 (286)
..++. .++.++||||+++.+|+.+++.|.+.+. .+..+||.++. +|..+++.|++|+.+ |++||+++
T Consensus 431 ~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l 509 (590)
T 3h1t_A 431 DFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLL 509 (590)
T ss_dssp HHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTT
T ss_pred HHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChh
Confidence 33433 3457999999999999999999976532 37788898764 799999999998766 88899999
Q ss_pred ccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCC--cceEEEEecc
Q 023157 213 ARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGR--KGVAINFVTR 258 (286)
Q Consensus 213 ~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~ 258 (286)
++|+|+|++++||++++|.|...|+||+||+||.+. .+..+++++.
T Consensus 510 ~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~ 557 (590)
T 3h1t_A 510 TTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDY 557 (590)
T ss_dssp TTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEEC
T ss_pred hcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEec
Confidence 999999999999999999999999999999999875 3333444443
No 62
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.95 E-value=2.8e-28 Score=211.05 Aligned_cols=199 Identities=20% Similarity=0.186 Sum_probs=140.6
Q ss_pred CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHh-----hccccHHHHHHHHHhCCcCccEEEEEeecChhHHHHHH
Q 023157 31 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM-----LSRGFKDQIYDIFQLLPAKVQVGVFSATMPPEALEITR 105 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~-----~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 105 (286)
+..+.++|.+.+.+.+... ..+.++++||+||+|.+ ...++... .. ..++.|+++||||++.....+..
T Consensus 89 ~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~---~~--~~~~~~~il~SAT~~~~~~~~~~ 162 (459)
T 2z83_A 89 NEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIAT---KV--ELGEAAAIFMTATPPGTTDPFPD 162 (459)
T ss_dssp CCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHH---HH--HTTSCEEEEECSSCTTCCCSSCC
T ss_pred CcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHH---Hh--ccCCccEEEEEcCCCcchhhhcc
Confidence 3456677877777666543 45778999999999973 22222211 11 13578999999999865322111
Q ss_pred HhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCC
Q 023157 106 KFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGD 185 (286)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~ 185 (286)
. ..+...... .... ........ .+.. .++++||||++++.++.+++.|+..++.+..+|++
T Consensus 163 ~--~~pi~~~~~--~~~~----------~~~~~~~~----~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~ 223 (459)
T 2z83_A 163 S--NAPIHDLQD--EIPD----------RAWSSGYE----WITE-YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK 223 (459)
T ss_dssp C--SSCEEEEEC--CCCS----------SCCSSCCH----HHHH-CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT
T ss_pred C--CCCeEEecc--cCCc----------chhHHHHH----HHHh-cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH
Confidence 1 122211110 0000 00000111 1222 25799999999999999999999999999999995
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEE--------------------ccCCCCcchhhhhhccccc
Q 023157 186 MDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN--------------------YDLPTQPENYLHRIGRSGR 245 (286)
Q Consensus 186 ~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~--------------------~~~~~s~~~~~Q~~GR~~R 245 (286)
+|..+++.|++|+.+|||||+++++|+|+|+ ++||+ ++.|.|..+|+||+||+||
T Consensus 224 ----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR 298 (459)
T 2z83_A 224 ----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGR 298 (459)
T ss_dssp ----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSC
T ss_pred ----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCC
Confidence 5778899999999999999999999999999 99998 5699999999999999999
Q ss_pred CCC-cceEEEEeccC
Q 023157 246 FGR-KGVAINFVTRD 259 (286)
Q Consensus 246 ~~~-~g~~~~~~~~~ 259 (286)
.|. +|.+++++...
T Consensus 299 ~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 299 NPNQVGDEYHYGGAT 313 (459)
T ss_dssp CTTCCCEEEEECSCC
T ss_pred CCCCCCeEEEEEccc
Confidence 987 89999999875
No 63
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=2.9e-26 Score=205.87 Aligned_cols=230 Identities=22% Similarity=0.290 Sum_probs=159.9
Q ss_pred eCcHHHHHHHhcCCCCCCCccEEEEehhhHhhcc--ccH----HHHHHHHHh------------------CCcCccEEEE
Q 023157 37 GTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR--GFK----DQIYDIFQL------------------LPAKVQVGVF 92 (286)
Q Consensus 37 ~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~--~~~----~~~~~i~~~------------------~~~~~~~i~~ 92 (286)
+||++|++++.+. .++|+||+|.+... ++. .....+... .+...|++++
T Consensus 320 ~tpg~LlDyl~~~-------~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~ 392 (661)
T 2d7d_A 320 STPYTLLDYFPDD-------FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYV 392 (661)
T ss_dssp CCCBCGGGGSCSS-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEE
T ss_pred CCccHHHHHcccC-------cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEE
Confidence 7888888776432 38999999986522 111 111111111 1135689999
Q ss_pred EeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHH-HHHHhhc-cCcceEEEecchhhHHHHHH
Q 023157 93 SATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETL-CDLYETL-AITQSVIFVNTRRKVDWLTD 170 (286)
Q Consensus 93 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l-~~~~~~~-~~~~~ivf~~~~~~~~~l~~ 170 (286)
|||+++..... ................+. ..+.....+...+ ..+.... .+.++||||+++..++.+++
T Consensus 393 SAT~~~~~~~~----~~~~~~~~~r~~~l~~p~-----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~ 463 (661)
T 2d7d_A 393 SATPGPYEIEH----TDEMVEQIIRPTGLLDPL-----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTD 463 (661)
T ss_dssp CSSCCHHHHHH----CSSCEEECCCTTCCCCCE-----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH
T ss_pred ecCCChhHHHh----hhCeeeeeecccCCCCCe-----EEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHH
Confidence 99997543221 111121111111111111 1112222233333 3333332 46799999999999999999
Q ss_pred HHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccC-----CCCcchhhhhhccccc
Q 023157 171 KMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL-----PTQPENYLHRIGRSGR 245 (286)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~-----~~s~~~~~Q~~GR~~R 245 (286)
.|++.|+.+..+||++++.+|..+++.|+.|+.+|||||+.+++|+|+|++++||+++. |.|..+|+||+||+||
T Consensus 464 ~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR 543 (661)
T 2d7d_A 464 YLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543 (661)
T ss_dssp HHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTT
T ss_pred HHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccC
Confidence 99999999999999999999999999999999999999999999999999999999997 9999999999999999
Q ss_pred CCCcceEEEEeccCcHHHHHH---------HHHHhchhcccCCcchh
Q 023157 246 FGRKGVAINFVTRDDERMLFD---------IQKFYNVVIEELPSNVA 283 (286)
Q Consensus 246 ~~~~g~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~ 283 (286)
. ..|.+++++++.+...... +++.++......|..+.
T Consensus 544 ~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~i~~~~~~~~~~~p~~~~ 589 (661)
T 2d7d_A 544 N-AEGRVIMYADKITKSMEIAINETKRRREQQERFNEEHGITPKTIN 589 (661)
T ss_dssp S-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred C-CCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhhhcCCCCCchh
Confidence 8 7899999999876654443 44455666666665543
No 64
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.94 E-value=4.8e-26 Score=199.94 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=99.7
Q ss_pred HHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcC-CCeeEEecCCCCHHHHHHHHHHhhcC-CCc-EEEEecCCc
Q 023157 139 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSG-SSR-VLITTDLLA 213 (286)
Q Consensus 139 ~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vlv~T~~~~ 213 (286)
|...+..++... ++.++|||+.+...++.+++.|... +..+..+||+++..+|.++++.|+++ +.. +|++|++++
T Consensus 326 K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~ 405 (500)
T 1z63_A 326 KMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGG 405 (500)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-
T ss_pred hHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccccc
Confidence 333444555433 5679999999999999999999885 88999999999999999999999988 454 789999999
Q ss_pred cCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcceE--EEEeccC
Q 023157 214 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVA--INFVTRD 259 (286)
Q Consensus 214 ~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~~--~~~~~~~ 259 (286)
+|+|+|.+++||++++|+++..+.|++||++|.|+.+.+ +.++...
T Consensus 406 ~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 406 FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred CCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 999999999999999999999999999999999876554 5555554
No 65
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.94 E-value=7.2e-26 Score=203.46 Aligned_cols=132 Identities=26% Similarity=0.356 Sum_probs=115.5
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccC-
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDL- 229 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~- 229 (286)
.+.++||||+++..++.+++.|.+.|+.+..+|++++..+|..+++.|+.|+.+|||||+.+++|+|+|++++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d 517 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDAD 517 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCc
Confidence 5679999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHH---------HHhchhcccCCcchh
Q 023157 230 ----PTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ---------KFYNVVIEELPSNVA 283 (286)
Q Consensus 230 ----~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~ 283 (286)
|.|..+|+||+||+||. ..|.++++++..+......++ +.++......|..+.
T Consensus 518 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~p~~~~ 583 (664)
T 1c4o_A 518 KEGFLRSERSLIQTIGRAARN-ARGEVWLYADRVSEAMQRAIEETNRRRALQEAYNLEHGITPETVR 583 (664)
T ss_dssp SCSGGGSHHHHHHHHGGGTTS-TTCEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC-
T ss_pred ccCCCCCHHHHHHHHCccCcC-CCCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchh
Confidence 89999999999999998 579999999987665544443 445555555555443
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.93 E-value=3.1e-24 Score=188.20 Aligned_cols=168 Identities=16% Similarity=0.226 Sum_probs=130.1
Q ss_pred cEEEEEeecChhHHHHHHHhcCCCeEEEecCCcccccccee-EEEEccchhhHHHHHHHHHhhc--cCcceEEEecchhh
Q 023157 88 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQ-FYVNVEKEEWKLETLCDLYETL--AITQSVIFVNTRRK 164 (286)
Q Consensus 88 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivf~~~~~~ 164 (286)
++.+||||+..+..++.+.+ +-. .+.+. ...+...+.+ ..... ....|...+...+... .+.++||||+|+..
T Consensus 411 kL~GMTGTa~te~~Ef~~iY-~l~-vv~IP-tnkp~~R~d~~d~vy~-t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~ 486 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVY-GME-VVVIP-THKPMIRKDHDDLVFR-TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEK 486 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHS-CCC-EEECC-CSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHH
T ss_pred HHeEECCCCchHHHHHHHHh-CCe-EEEEC-CCCCcceeecCcEEEe-cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHH
Confidence 79999999987665554444 322 22332 2222222333 22333 3444777777777643 56799999999999
Q ss_pred HHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCC--------CCcEEEEccCCCCcchh
Q 023157 165 VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQ--------QVSLVINYDLPTQPENY 236 (286)
Q Consensus 165 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~--------~~~~vi~~~~~~s~~~~ 236 (286)
++.+++.|+..|+.+..+||+....++..+...++.| .|+|||+++++|+|++ +..+||.++.|.|.+.|
T Consensus 487 sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y 564 (822)
T 3jux_A 487 SELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRID 564 (822)
T ss_dssp HHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHH
T ss_pred HHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHH
Confidence 9999999999999999999997666666666666666 5999999999999998 56799999999999999
Q ss_pred hhhhcccccCCCcceEEEEeccCcH
Q 023157 237 LHRIGRSGRFGRKGVAINFVTRDDE 261 (286)
Q Consensus 237 ~Q~~GR~~R~~~~g~~~~~~~~~~~ 261 (286)
.||+||+||.|.+|.+..+++..|.
T Consensus 565 ~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 565 NQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp HHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred HHhhCccccCCCCeeEEEEechhHH
Confidence 9999999999999999999998873
No 67
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=1.4e-23 Score=188.71 Aligned_cols=109 Identities=18% Similarity=0.263 Sum_probs=100.1
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCc---EEEEecCCccCCCCCCCcEEEEc
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR---VLITTDLLARGIDVQQVSLVINY 227 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~~~Gidi~~~~~vi~~ 227 (286)
.+.++|||++....++.+...|...|+.+..+||+++..+|..+++.|++|+.. +|++|.++++|+|++.+++||++
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~ 494 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMF 494 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEEC
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEE
Confidence 568999999999999999999999999999999999999999999999998764 89999999999999999999999
Q ss_pred cCCCCcchhhhhhcccccCCCcc--eEEEEeccC
Q 023157 228 DLPTQPENYLHRIGRSGRFGRKG--VAINFVTRD 259 (286)
Q Consensus 228 ~~~~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~ 259 (286)
|+|+++..+.|++||++|.|+.. .++.++...
T Consensus 495 d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 495 DPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp SCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred CCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999999999999998764 455566655
No 68
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.5e-24 Score=194.55 Aligned_cols=131 Identities=25% Similarity=0.359 Sum_probs=110.7
Q ss_pred HHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCC---cEEEEecCCc
Q 023157 139 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSS---RVLITTDLLA 213 (286)
Q Consensus 139 ~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vlv~T~~~~ 213 (286)
|+..+..++... .+.++|||+.....+..+...|...|+.+..+||+++..+|..+++.|+++.. .+|++|.+++
T Consensus 557 K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg 636 (800)
T 3mwy_W 557 KMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGG 636 (800)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHT
T ss_pred HHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccccc
Confidence 445555666543 56799999999999999999999999999999999999999999999998665 4899999999
Q ss_pred cCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCc--ceEEEEeccC--cHHHHHHHHH
Q 023157 214 RGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRK--GVAINFVTRD--DERMLFDIQK 269 (286)
Q Consensus 214 ~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~--~~~~~~~~~~ 269 (286)
+|+|++.+++||++++|+++..+.|+.||++|.|+. ..++.++... +...+....+
T Consensus 637 ~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~ 696 (800)
T 3mwy_W 637 LGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARK 696 (800)
T ss_dssp TTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred CCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999875 4566666665 4444444433
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.88 E-value=8.9e-22 Score=183.06 Aligned_cols=233 Identities=11% Similarity=0.119 Sum_probs=146.3
Q ss_pred cCcchHHHHHHHh-CCCcEEEeCcHHHHHHHhcCC--CCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 17 GGTSVREDQRILQ-AGVHVVVGTPGRVFDMLRRQS--LRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 17 g~~~~~~~~~~~~-~~~~iii~Tp~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
++.+.......+. .+.+|+|+||+++...+.... ..+....+||+||||+.... .....+...++ +.+++++|
T Consensus 360 ~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~---~~~~~I~~~~p-~a~~lgfT 435 (1038)
T 2w00_A 360 GSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG---EAQKNLKKKFK-RYYQFGFT 435 (1038)
T ss_dssp SSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH---HHHHHHHHHCS-SEEEEEEE
T ss_pred cccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch---HHHHHHHHhCC-cccEEEEe
Confidence 3334444444443 468999999999998876432 13456789999999986532 33456666675 57899999
Q ss_pred eecChhHH----HHHHHhcCC-----------------CeEEEecCCcccc------------ccceeEEEEccchhhHH
Q 023157 94 ATMPPEAL----EITRKFMNK-----------------PVRILVKRDELTL------------EGIKQFYVNVEKEEWKL 140 (286)
Q Consensus 94 AT~~~~~~----~~~~~~~~~-----------------~~~~~~~~~~~~~------------~~i~~~~~~~~~~~~~~ 140 (286)
|||..... .....+++. |..+......... ..+.+.. ...... ..
T Consensus 436 ATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~-~l~~~~-ri 513 (1038)
T 2w00_A 436 GTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQ-AFLHPM-RI 513 (1038)
T ss_dssp SSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTT-TTTCHH-HH
T ss_pred CCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHH-HhcCHH-HH
Confidence 99974321 011122222 2221111100000 0000000 000111 12
Q ss_pred HH-HHHHHhhc-----------cCcceEEEecchhhHHHHHHHHhcCC------------Cee-EEecCC----------
Q 023157 141 ET-LCDLYETL-----------AITQSVIFVNTRRKVDWLTDKMRSRD------------HTV-SATHGD---------- 185 (286)
Q Consensus 141 ~~-l~~~~~~~-----------~~~~~ivf~~~~~~~~~l~~~l~~~~------------~~~-~~~~~~---------- 185 (286)
.. +..++.+. .+.++||||+++.+|..+++.|.+.+ ..+ .++|++
T Consensus 514 ~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~ 593 (1038)
T 2w00_A 514 QEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGE 593 (1038)
T ss_dssp HHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCC
T ss_pred HHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccc
Confidence 22 22222211 34589999999999999999987643 445 445542
Q ss_pred C----------CH-----------------------------HHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEE
Q 023157 186 M----------DQ-----------------------------NTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 226 (286)
Q Consensus 186 ~----------~~-----------------------------~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~ 226 (286)
+ ++ ..|..++++|++|+.+|||+|+++.+|+|+|.+ +++.
T Consensus 594 ~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tly 672 (1038)
T 2w00_A 594 ISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLF 672 (1038)
T ss_dssp CCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEE
T ss_pred cccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEE
Confidence 2 21 137788999999999999999999999999999 6778
Q ss_pred ccCCCCcchhhhhhcccccCCCc----ceEEEEe
Q 023157 227 YDLPTQPENYLHRIGRSGRFGRK----GVAINFV 256 (286)
Q Consensus 227 ~~~~~s~~~~~Q~~GR~~R~~~~----g~~~~~~ 256 (286)
+|.|.+...|+|++||++|.+.+ |.++.+.
T Consensus 673 lDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 673 VDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFR 706 (1038)
T ss_dssp EESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESS
T ss_pred EccCCCccceeehhhccCcCCCCCCCcEEEEEcc
Confidence 99999999999999999998653 5555444
No 70
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.84 E-value=1.5e-20 Score=151.15 Aligned_cols=123 Identities=16% Similarity=0.230 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcC-CCeeEEecCCCCHHHHHHHHHHhhcC-CCc-EEEEecC
Q 023157 137 EWKLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSG-SSR-VLITTDL 211 (286)
Q Consensus 137 ~~~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~-vlv~T~~ 211 (286)
..|+..+..++... .+.++|||+++...++.+...|... |+.+..+||+++..+|..+++.|+++ +.. +|++|++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 34888888888766 6789999999999999999999885 89999999999999999999999988 666 7899999
Q ss_pred CccCCCCCCCcEEEEccCCCCcchhhhhhcccccCCCcce--EEEEeccC
Q 023157 212 LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV--AINFVTRD 259 (286)
Q Consensus 212 ~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~ 259 (286)
+++|+|++.+++||++|+|+++..+.|++||++|.|+.+. ++.++...
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999999999999999999999999999999987655 46666655
No 71
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.74 E-value=1.4e-17 Score=132.23 Aligned_cols=117 Identities=29% Similarity=0.411 Sum_probs=105.8
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
++.+..++++..++|+.....+...+..+++|+|+||+++.+.+.+....+.+++++|+||+|++.++++...+..+++.
T Consensus 124 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 203 (242)
T 3fe2_A 124 EYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQ 203 (242)
T ss_dssp HHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTT
T ss_pred HHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHh
Confidence 44556689999999999998888888888999999999999999888888999999999999999999999999999999
Q ss_pred CCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCC
Q 023157 83 LPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD 119 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 119 (286)
++++.|++++|||+++......+.++.++..+.....
T Consensus 204 ~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 204 IRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp SCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred CCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9989999999999999999999999999988877654
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.72 E-value=2.5e-15 Score=134.74 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=52.2
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHH-HHHHhcCC------CCCC---CccEEEEehhhHhh
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRV-FDMLRRQS------LRPD---YIKMFVLDEADEML 68 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l-~~~~~~~~------~~~~---~~~~iIiDE~h~~~ 68 (286)
+.+.+.+|+++..++||.+...+... .+++|+|+||+.+ +++++.+. +.+. ++.++|+||+|.++
T Consensus 141 ~~l~~~lGLsv~~i~Gg~~~~~r~~a--y~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 141 GPVYRGLGLSVGVIQHASTPAERRKA--YLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHHTTTCCEEECCTTCCHHHHHHH--HTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHH--cCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 46778899999999999886544443 3689999999999 78887652 4566 79999999999876
No 73
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.72 E-value=6.7e-17 Score=129.24 Aligned_cols=126 Identities=33% Similarity=0.520 Sum_probs=101.4
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
++....++++..++|+.....+...+..+++|+|+||+++.+.+.+....+.++++||+||+|++.++++...+..++..
T Consensus 122 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 201 (253)
T 1wrb_A 122 KFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEE 201 (253)
T ss_dssp HHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHS
T ss_pred HHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhh
Confidence 34556678999999999888887878788999999999999999988888899999999999999999999999999885
Q ss_pred --CCc--CccEEEEEeecChhHHHHHHHhcCCCeEEEecCCcccccccee
Q 023157 83 --LPA--KVQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQ 128 (286)
Q Consensus 83 --~~~--~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 128 (286)
.+. +.|++++|||++++...+.+.++.++..+...........+.|
T Consensus 202 ~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q 251 (253)
T 1wrb_A 202 SNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251 (253)
T ss_dssp SCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----------
T ss_pred ccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCcee
Confidence 343 6789999999999999999999999988887766555555554
No 74
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.69 E-value=3.1e-16 Score=121.40 Aligned_cols=111 Identities=38% Similarity=0.641 Sum_probs=98.7
Q ss_pred ccccc-CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 4 LGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 4 ~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
+.+.. +.++..++|+.....+...+..+++|+|+||+++.+.+.+....+.+++++|+||+|++.+.++...+..++..
T Consensus 94 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~ 173 (206)
T 1vec_A 94 VSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILT 173 (206)
T ss_dssp HTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHH
T ss_pred HHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHh
Confidence 34444 78999999999888777777788999999999999999888888889999999999999998999999999999
Q ss_pred CCcCccEEEEEeecChhHHHHHHHhcCCCeEE
Q 023157 83 LPAKVQVGVFSATMPPEALEITRKFMNKPVRI 114 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 114 (286)
++++.|++++|||+++......+.++.+|..+
T Consensus 174 ~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 174 LPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp SCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred CCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 98899999999999999999999998887654
No 75
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.68 E-value=3.4e-16 Score=123.12 Aligned_cols=109 Identities=28% Similarity=0.451 Sum_probs=94.2
Q ss_pred ccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcC
Q 023157 7 YLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAK 86 (286)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~ 86 (286)
..++++..++|+.....+...+.++++|+|+||+++.+.+.+....+.++++||+||+|++.++++...+..++...+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~ 198 (228)
T 3iuy_A 119 YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPD 198 (228)
T ss_dssp CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSS
T ss_pred ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcC
Confidence 35788999999998888888888889999999999999998888888999999999999999999999999999999989
Q ss_pred ccEEEEEeecChhHHHHHHHhcCCCeEEE
Q 023157 87 VQVGVFSATMPPEALEITRKFMNKPVRIL 115 (286)
Q Consensus 87 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 115 (286)
.|++++|||+++......+.++.+|..+.
T Consensus 199 ~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 199 RQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred CeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999998887654
No 76
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.68 E-value=3e-16 Score=124.99 Aligned_cols=114 Identities=31% Similarity=0.550 Sum_probs=100.9
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhc-CCCCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
++....++++..++|+.....+...+..+++|+|+||+++.+.+.+ ....+.++++||+||+|++.++++...+..++.
T Consensus 133 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~ 212 (249)
T 3ber_A 133 ALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILK 212 (249)
T ss_dssp HHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHH
T ss_pred HHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHH
Confidence 4555678999999999988877777778899999999999998876 456788899999999999999999999999999
Q ss_pred hCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEe
Q 023157 82 LLPAKVQVGVFSATMPPEALEITRKFMNKPVRILV 116 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 116 (286)
.++.+.|++++|||+++....+.+.++.+|..+.+
T Consensus 213 ~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 213 VIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp SSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 99889999999999999999999999999887654
No 77
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.67 E-value=1.6e-16 Score=124.19 Aligned_cols=110 Identities=34% Similarity=0.549 Sum_probs=97.1
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCcc
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQ 88 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~ 88 (286)
++++..++|+.........+..+++|+|+||+++.+.+.+....+.+++++|+||+|++.++++...+..++..++++.|
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~ 183 (219)
T 1q0u_A 104 MIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQ 183 (219)
T ss_dssp CCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCE
T ss_pred ceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccE
Confidence 78899999998776665555568899999999999999887778888999999999999999999999999999988899
Q ss_pred EEEEEeecChhHHHHHHHhcCCCeEEEecC
Q 023157 89 VGVFSATMPPEALEITRKFMNKPVRILVKR 118 (286)
Q Consensus 89 ~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 118 (286)
++++|||++++..+..+.++.+|..+....
T Consensus 184 ~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 184 MLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp EEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred EEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 999999999999999999999998765543
No 78
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.67 E-value=2.8e-16 Score=124.34 Aligned_cols=114 Identities=68% Similarity=1.122 Sum_probs=89.9
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhC-CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
++.+..+.++..++|+.....+...+.. .++|+|+||+++.+.+.+....+.++++||+||+|++.++++...+..+++
T Consensus 120 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~ 199 (237)
T 3bor_A 120 ALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQ 199 (237)
T ss_dssp HHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred HHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHH
Confidence 4556678899999998887666655544 489999999999999988778888899999999999999999999999999
Q ss_pred hCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEe
Q 023157 82 LLPAKVQVGVFSATMPPEALEITRKFMNKPVRILV 116 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 116 (286)
.++...|++++|||++++.....+.++.+|..+.+
T Consensus 200 ~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 200 KLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp HSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred hCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 99889999999999999999999999988876644
No 79
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.67 E-value=3.6e-16 Score=122.61 Aligned_cols=116 Identities=62% Similarity=0.986 Sum_probs=91.5
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
++....++++..++|+.....+...+.. ++|+|+||+++.+.+.+....+.++++||+||+|++.++++...+..++..
T Consensus 104 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~ 182 (224)
T 1qde_A 104 ALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 182 (224)
T ss_dssp HHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHh
Confidence 4555678999999999887766655544 899999999999999888888889999999999999999999999999999
Q ss_pred CCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCC
Q 023157 83 LPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD 119 (286)
Q Consensus 83 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 119 (286)
++.+.|++++|||++++.....+.++.++..+.+...
T Consensus 183 ~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 183 LPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp SCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred CCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9889999999999999999999999998877655443
No 80
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.66 E-value=5.5e-16 Score=124.41 Aligned_cols=110 Identities=27% Similarity=0.486 Sum_probs=96.9
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcC-CCCCCCccEEEEehhhHhhccccHHHHHHHH
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEADEMLSRGFKDQIYDIF 80 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~ 80 (286)
+++....+..+..++|+.....+...+..+++|+|+||+++.+.+.+. ...+.++++||+||+|++.++++...+..++
T Consensus 147 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~ 226 (262)
T 3ly5_A 147 KELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQII 226 (262)
T ss_dssp HHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHH
T ss_pred HHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHH
Confidence 345667788999999999988888777778999999999999988764 3678889999999999999999999999999
Q ss_pred HhCCcCccEEEEEeecChhHHHHHHHhcCCC
Q 023157 81 QLLPAKVQVGVFSATMPPEALEITRKFMNKP 111 (286)
Q Consensus 81 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 111 (286)
+.++...|++++|||+++....+.+.++..+
T Consensus 227 ~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 227 KLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred HhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999888877654
No 81
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.65 E-value=8.6e-16 Score=120.97 Aligned_cols=106 Identities=37% Similarity=0.651 Sum_probs=93.4
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccc-cHHHHHHHHHhCCcCc
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRG-FKDQIYDIFQLLPAKV 87 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~-~~~~~~~i~~~~~~~~ 87 (286)
++++..++|+.....+...+ .+++|+|+||+++.+.+....+.+.+++++|+||+|++.+++ +...+..+++.++...
T Consensus 121 ~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~ 199 (230)
T 2oxc_A 121 GLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASK 199 (230)
T ss_dssp TCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSC
T ss_pred CceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCC
Confidence 78999999998877666655 468999999999999998877788889999999999999887 8999999999998899
Q ss_pred cEEEEEeecChhHHHHHHHhcCCCeEEE
Q 023157 88 QVGVFSATMPPEALEITRKFMNKPVRIL 115 (286)
Q Consensus 88 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 115 (286)
|++++|||+++........++.++..+.
T Consensus 200 ~~l~lSAT~~~~~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 200 QMLAVSATYPEFLANALTKYMRDPTFVR 227 (230)
T ss_dssp EEEEEESCCCHHHHHHHTTTCSSCEEEC
T ss_pred eEEEEEeccCHHHHHHHHHHcCCCeEEE
Confidence 9999999999998888888888876653
No 82
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=119.99 Aligned_cols=114 Identities=27% Similarity=0.504 Sum_probs=96.0
Q ss_pred ccccccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcC-CCCCCCccEEEEehhhHhhccccHHHHHHHHH
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQ-SLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
++....++++..++|+.....+...+ .+++|+|+||+++.+.+... ...+.++++||+||+|++.++++...+..++.
T Consensus 119 ~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~ 197 (236)
T 2pl3_A 119 KVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIE 197 (236)
T ss_dssp HHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHH
T ss_pred HHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHH
Confidence 45556678999999998877666555 46899999999999988764 46678899999999999999999999999999
Q ss_pred hCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEec
Q 023157 82 LLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVK 117 (286)
Q Consensus 82 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~ 117 (286)
.++...|++++|||+++....+.+.++.+|..+...
T Consensus 198 ~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 198 NLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp TSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred hCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 998899999999999999999999999888776543
No 83
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.64 E-value=2e-15 Score=116.84 Aligned_cols=107 Identities=40% Similarity=0.612 Sum_probs=95.8
Q ss_pred ceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccE
Q 023157 10 VKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQV 89 (286)
Q Consensus 10 ~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 89 (286)
+++..++|+.....+...+..+++|+|+||+++.+.+.+....+.+++++|+||+|++.++++...+..++...+...|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~ 178 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQT 178 (207)
T ss_dssp SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEE
T ss_pred ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeE
Confidence 67888999988777777777789999999999999998887888999999999999999999999999999999889999
Q ss_pred EEEEeecChhHHHHHHHhcCCCeEEEe
Q 023157 90 GVFSATMPPEALEITRKFMNKPVRILV 116 (286)
Q Consensus 90 i~~SAT~~~~~~~~~~~~~~~~~~~~~ 116 (286)
+++|||+++....+.+.++.+|..+.+
T Consensus 179 i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 179 LLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp EEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999988876643
No 84
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.63 E-value=1.9e-15 Score=118.12 Aligned_cols=112 Identities=40% Similarity=0.727 Sum_probs=95.3
Q ss_pred ccccc-CceEEEEEcCcchHHHHHHHh-CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhc-cccHHHHHHHH
Q 023157 4 LGDYL-GVKVHACVGGTSVREDQRILQ-AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIF 80 (286)
Q Consensus 4 ~~~~~-~~~~~~~~g~~~~~~~~~~~~-~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~ 80 (286)
+.+.. ++++..++|+.....+...+. ..++|+|+||+++.+.+.+....+.+++++|+||+|++.+ .++...+..++
T Consensus 105 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~ 184 (220)
T 1t6n_A 105 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 184 (220)
T ss_dssp HTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHH
T ss_pred HHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHH
Confidence 44444 789999999988776665554 4579999999999999988888889999999999999886 47778888999
Q ss_pred HhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEE
Q 023157 81 QLLPAKVQVGVFSATMPPEALEITRKFMNKPVRIL 115 (286)
Q Consensus 81 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 115 (286)
...+.+.|++++|||++++...+.+.++.+|..+.
T Consensus 185 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 185 RMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 88888999999999999999999999998887653
No 85
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=118.95 Aligned_cols=112 Identities=35% Similarity=0.596 Sum_probs=93.6
Q ss_pred ccccc-CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhc-CCCCCCCccEEEEehhhHhhc-cccHHHHHHHH
Q 023157 4 LGDYL-GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR-QSLRPDYIKMFVLDEADEMLS-RGFKDQIYDIF 80 (286)
Q Consensus 4 ~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~-~~~~~~~~~~iIiDE~h~~~~-~~~~~~~~~i~ 80 (286)
+.+.+ ++++..++|+....... ..+++|+|+||+++.+++.+ ..+.+.++++||+||+|++.+ .++...+..+.
T Consensus 185 l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~ 261 (300)
T 3fmo_B 185 MGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQ 261 (300)
T ss_dssp HTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHH
T ss_pred HHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHH
Confidence 44443 67888888887654322 34689999999999999966 556788999999999999987 68889999999
Q ss_pred HhCCcCccEEEEEeecChhHHHHHHHhcCCCeEEEecC
Q 023157 81 QLLPAKVQVGVFSATMPPEALEITRKFMNKPVRILVKR 118 (286)
Q Consensus 81 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 118 (286)
..++.+.|++++|||+++....+.+.++.+|..+.+..
T Consensus 262 ~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 262 RMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp TTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 99999999999999999999999999999998876643
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=113.57 Aligned_cols=117 Identities=20% Similarity=0.366 Sum_probs=90.6
Q ss_pred ccccccCceEEEEEcCcchHHHH-HHHhCCCcEEEeCcHHHHHHHhcC--CCCCCCccEEEEehhhHhhcc---ccHHHH
Q 023157 3 ALGDYLGVKVHACVGGTSVREDQ-RILQAGVHVVVGTPGRVFDMLRRQ--SLRPDYIKMFVLDEADEMLSR---GFKDQI 76 (286)
Q Consensus 3 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~iii~Tp~~l~~~~~~~--~~~~~~~~~iIiDE~h~~~~~---~~~~~~ 76 (286)
++.+..++++..++|+....... .....+++|+|+||+++.+.+.+. ...+.++++||+||+|++.++ ++...+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~ 199 (245)
T 3dkp_A 120 KISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQL 199 (245)
T ss_dssp HHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHH
T ss_pred HHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHH
Confidence 44555677777777764433222 122347899999999999999875 467888999999999999874 677888
Q ss_pred HHHHHhC-CcCccEEEEEeecChhHHHHHHHhcCCCeEEEecCC
Q 023157 77 YDIFQLL-PAKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD 119 (286)
Q Consensus 77 ~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 119 (286)
..++... +.+.|++++|||++++.....+.++.++..+.....
T Consensus 200 ~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 200 ASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp HHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred HHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 8887665 457899999999999999999999999988877654
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.34 E-value=7.5e-12 Score=110.34 Aligned_cols=109 Identities=12% Similarity=0.196 Sum_probs=68.2
Q ss_pred HHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEE--EecCCccCCCCC
Q 023157 142 TLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLI--TTDLLARGIDVQ 219 (286)
Q Consensus 142 ~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv--~T~~~~~Gidi~ 219 (286)
.+..++.. ..+.++||++|...++.+++.++. .. ...++.. .++.++++.|+.+. .||+ +|+.+++|+|+|
T Consensus 375 ~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~ 447 (540)
T 2vl7_A 375 LLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFR 447 (540)
T ss_dssp HHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-----------
T ss_pred HHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecC
Confidence 34444443 457899999999999999998865 22 4455543 46788999998864 6777 789999999999
Q ss_pred C----CcEEEEccCCCCc------------------------------chhhhhhcccccCCCc-ceEEEEecc
Q 023157 220 Q----VSLVINYDLPTQP------------------------------ENYLHRIGRSGRFGRK-GVAINFVTR 258 (286)
Q Consensus 220 ~----~~~vi~~~~~~s~------------------------------~~~~Q~~GR~~R~~~~-g~~~~~~~~ 258 (286)
+ +++||+++.|... ..+.|.+||+.|...+ |. +++++.
T Consensus 448 ~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~-v~llD~ 520 (540)
T 2vl7_A 448 EKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK-IYLCDS 520 (540)
T ss_dssp ----CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE-EEEESG
T ss_pred CCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE-EEEEcc
Confidence 7 7899999987421 3356899999997443 54 444444
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.08 E-value=6.5e-11 Score=91.84 Aligned_cols=87 Identities=11% Similarity=0.107 Sum_probs=54.0
Q ss_pred CceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCC------CCCCCccEEEEehhhHhhccccHHHH-HHHHH
Q 023157 9 GVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQS------LRPDYIKMFVLDEADEMLSRGFKDQI-YDIFQ 81 (286)
Q Consensus 9 ~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~------~~~~~~~~iIiDE~h~~~~~~~~~~~-~~i~~ 81 (286)
++++..++|+............+++|+|+||+.+.+.+.... ..+.++++||+||+|++...++...+ ..++.
T Consensus 110 ~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~ 189 (216)
T 3b6e_A 110 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 189 (216)
T ss_dssp TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHH
T ss_pred CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHH
Confidence 567888888766554444444568999999999999887643 55678899999999998766544433 33322
Q ss_pred hC-------------CcCccEEEEEee
Q 023157 82 LL-------------PAKVQVGVFSAT 95 (286)
Q Consensus 82 ~~-------------~~~~~~i~~SAT 95 (286)
.. .+.++++++|||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 190 QKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HhcccccccccccCCCCcceEEEeecC
Confidence 21 146899999998
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.05 E-value=9.5e-08 Score=84.50 Aligned_cols=110 Identities=15% Similarity=0.212 Sum_probs=72.1
Q ss_pred HHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEe--cCCccCCCCC-
Q 023157 143 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITT--DLLARGIDVQ- 219 (286)
Q Consensus 143 l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T--~~~~~Gidi~- 219 (286)
+.+++.. ..+.++||++|....+.+++. .+..+..-..+++ +.+.++.|+.....||+|| ..+++|||+|
T Consensus 385 i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d 457 (551)
T 3crv_A 385 LLKIYFQ-AKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRN 457 (551)
T ss_dssp HHHHHHH-CSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEE
T ss_pred HHHHHHh-CCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccc
Confidence 3334433 346899999999999998873 2333333222344 3557777754445899999 5899999999
Q ss_pred ----CCcEEEEccCCCCc------------------------------chhhhhhcccccCCCcceEEEEeccC
Q 023157 220 ----QVSLVINYDLPTQP------------------------------ENYLHRIGRSGRFGRKGVAINFVTRD 259 (286)
Q Consensus 220 ----~~~~vi~~~~~~s~------------------------------~~~~Q~~GR~~R~~~~g~~~~~~~~~ 259 (286)
.+.+||+.+.|... ..+.|.+||+-|...+-=++++++.+
T Consensus 458 ~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 458 NDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp TTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred cCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 47899998876310 12358889999975443344444443
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.95 E-value=1.2e-09 Score=85.88 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=53.3
Q ss_pred CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHh-hccccH-HHHHHHHHhCCcCccEEEEEeecChhH
Q 023157 30 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM-LSRGFK-DQIYDIFQLLPAKVQVGVFSATMPPEA 100 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~-~~~~~~-~~~~~i~~~~~~~~~~i~~SAT~~~~~ 100 (286)
.+++|+|+||+++.+.+.. .++++++||+||+|.. .+.++. ..+..+.... ++.|++++|||++.+.
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSM 222 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHH
T ss_pred CCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHH
Confidence 3578999999999998876 4788899999999985 455555 4566666665 4789999999998765
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.78 E-value=1.5e-09 Score=87.85 Aligned_cols=85 Identities=19% Similarity=0.100 Sum_probs=60.2
Q ss_pred cccCceEEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCc
Q 023157 6 DYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA 85 (286)
Q Consensus 6 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~ 85 (286)
...+..+..+.|+..... ....+.+|+|+||+.+.+. ....+.++++||+||||++.+ ..+..++..+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~ 251 (282)
T 1rif_A 182 LFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNN 251 (282)
T ss_dssp SCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTT
T ss_pred ccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhc
Confidence 334456777777755432 1124689999999876432 223467789999999998763 466677777767
Q ss_pred CccEEEEEeecChhH
Q 023157 86 KVQVGVFSATMPPEA 100 (286)
Q Consensus 86 ~~~~i~~SAT~~~~~ 100 (286)
..+++++||||+...
T Consensus 252 ~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 252 CMFKFGLSGSLRDGK 266 (282)
T ss_dssp CCEEEEECSSCCTTS
T ss_pred CCeEEEEeCCCCCcc
Confidence 899999999997653
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.72 E-value=4e-07 Score=81.42 Aligned_cols=111 Identities=15% Similarity=0.270 Sum_probs=73.2
Q ss_pred HHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec--CCccCCCCCC
Q 023157 143 LCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD--LLARGIDVQQ 220 (286)
Q Consensus 143 l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~--~~~~Gidi~~ 220 (286)
+..+++.. .+.++||++|....+.+++.++. .... ...+++..++..+++.|+ ++..||+++. .+++|+|+|+
T Consensus 440 i~~l~~~~-~g~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g 514 (620)
T 4a15_A 440 IEDIILKV-KKNTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPG 514 (620)
T ss_dssp HHHHHHHH-CSCEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------
T ss_pred HHHHHHhC-CCCEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCC
Confidence 44444443 46799999999999999998872 2222 444555678999999999 8889999984 8999999995
Q ss_pred --CcEEEEccCCCCc-----------------------------chhhhhhcccccCCCcceEEEEecc
Q 023157 221 --VSLVINYDLPTQP-----------------------------ENYLHRIGRSGRFGRKGVAINFVTR 258 (286)
Q Consensus 221 --~~~vi~~~~~~s~-----------------------------~~~~Q~~GR~~R~~~~g~~~~~~~~ 258 (286)
+.+||+.+.|... ....|.+||+-|...+-=++++++.
T Consensus 515 ~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 515 NELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 7899999987421 2236899999997544223444443
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.53 E-value=5.4e-08 Score=76.46 Aligned_cols=75 Identities=16% Similarity=0.158 Sum_probs=53.0
Q ss_pred cCce-EEEEEcCcchHHHHHHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcC
Q 023157 8 LGVK-VHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAK 86 (286)
Q Consensus 8 ~~~~-~~~~~g~~~~~~~~~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~ 86 (286)
++++ +..++|+.. ...+|+|+|++.+...... ....+++||+||+|.+.+..+. .++..++ .
T Consensus 156 ~~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~ 218 (237)
T 2fz4_A 156 FGEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-A 218 (237)
T ss_dssp GCGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHTCC-C
T ss_pred CCCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHhcc-C
Confidence 5677 777777654 2478999999998765542 1244789999999998766543 3444443 6
Q ss_pred ccEEEEEeecChh
Q 023157 87 VQVGVFSATMPPE 99 (286)
Q Consensus 87 ~~~i~~SAT~~~~ 99 (286)
.+++++||||...
T Consensus 219 ~~~l~LSATp~r~ 231 (237)
T 2fz4_A 219 PFRLGLTATFERE 231 (237)
T ss_dssp SEEEEEEESCC--
T ss_pred CEEEEEecCCCCC
Confidence 7899999999854
No 94
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.25 E-value=2.4e-05 Score=63.29 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhc--cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCC
Q 023157 139 KLETLCDLYETL--AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI 216 (286)
Q Consensus 139 ~~~~l~~~~~~~--~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 216 (286)
|+..+..++... .+.+++||+...+...-+-+.+...++....+.|.....++ + -..+...+.+.|..+.-|+
T Consensus 110 Kf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~-k----~~~~~~~i~Lltsag~~gi 184 (328)
T 3hgt_A 110 KFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAA-A----ANDFSCTVHLFSSEGINFT 184 (328)
T ss_dssp HHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCTT
T ss_pred cHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhh-h----cccCCceEEEEECCCCCCc
Confidence 777777777644 56799999999999999999999999999999998544321 1 1234556666677777777
Q ss_pred C-----CCCCcEEEEccCCCCcchh-hhhhcccccCC----CcceEEEEeccCcH
Q 023157 217 D-----VQQVSLVINYDLPTQPENY-LHRIGRSGRFG----RKGVAINFVTRDDE 261 (286)
Q Consensus 217 d-----i~~~~~vi~~~~~~s~~~~-~Q~~GR~~R~~----~~g~~~~~~~~~~~ 261 (286)
| ...++.||.+|..+++..= +|.+-|+.|.+ +...++.++.....
T Consensus 185 n~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 185 KYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp TSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred CcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 6 6789999999999999885 88777877763 45678888877643
No 95
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.01 E-value=0.018 Score=52.79 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=65.1
Q ss_pred cCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-CccCCCCCCCcEEE
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-LARGIDVQQVSLVI 225 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gidi~~~~~vi 225 (286)
.+.++++.+|++.-|...++.+++ .++.+..+||+++..++...++.+.+|+.+|+|+|.. +...+++.++..||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 456899999999888877776654 4789999999999999999999999999999999974 34457788888888
Q ss_pred EccC
Q 023157 226 NYDL 229 (286)
Q Consensus 226 ~~~~ 229 (286)
+=..
T Consensus 496 IDEa 499 (780)
T 1gm5_A 496 IDEQ 499 (780)
T ss_dssp EESC
T ss_pred eccc
Confidence 6333
No 96
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.46 E-value=0.039 Score=46.58 Aligned_cols=78 Identities=9% Similarity=0.161 Sum_probs=63.8
Q ss_pred ccCcceEEEecchhhHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCc----cCCCCCCCc
Q 023157 150 LAITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLA----RGIDVQQVS 222 (286)
Q Consensus 150 ~~~~~~ivf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~----~Gidi~~~~ 222 (286)
..+.+++|.+|++.-+...++.++. .+..+..++|+.+..++....+.+..|+.+|+|+|+..- .-++...++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3567899999999999999998887 578999999999999998999999999999999996211 124556778
Q ss_pred EEEEc
Q 023157 223 LVINY 227 (286)
Q Consensus 223 ~vi~~ 227 (286)
++|+=
T Consensus 142 ~iViD 146 (414)
T 3oiy_A 142 FVFVD 146 (414)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 88753
No 97
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=94.20 E-value=0.44 Score=41.61 Aligned_cols=121 Identities=11% Similarity=0.054 Sum_probs=80.7
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-C-----ccCCCCCCCcEEE
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-L-----ARGIDVQQVSLVI 225 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~-----~~Gidi~~~~~vi 225 (286)
.+.++|.+|++.-+....+.++..+..+..++++.+..++..+...+..|..+++++|+- + ...++..+++.+|
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 468999999999999999999999999999999999999999999999999999999952 1 1113334566666
Q ss_pred EccCC----C--CcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhc
Q 023157 226 NYDLP----T--QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYN 272 (286)
Q Consensus 226 ~~~~~----~--s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~ 272 (286)
+=.+. + +...-+.++++..+.......+.+.-.........+.+.++
T Consensus 145 iDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~ 197 (523)
T 1oyw_A 145 VDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLG 197 (523)
T ss_dssp ESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHT
T ss_pred EeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhC
Confidence 42221 1 12222334444332222234555555555555566666554
No 98
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=94.10 E-value=0.23 Score=44.18 Aligned_cols=122 Identities=7% Similarity=0.066 Sum_probs=80.4
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHh--hcCCCcEEEEecC-C----------ccCCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREF--RSGSSRVLITTDL-L----------ARGIDV 218 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f--~~~~~~vlv~T~~-~----------~~Gidi 218 (286)
.+.+||.+|++.-++...+.|...|+.+..++++++..++..++..+ ..+..+|+++|+. + ....+.
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~ 163 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEA 163 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHT
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhc
Confidence 46899999999999999999998899999999999999998888888 5788999999972 1 112234
Q ss_pred CCCcEEEEccCC----CC--cchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhch
Q 023157 219 QQVSLVINYDLP----TQ--PENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNV 273 (286)
Q Consensus 219 ~~~~~vi~~~~~----~s--~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 273 (286)
..++++|+=.+. +. ...-+..++...+.......+.+.-.........+.+.++.
T Consensus 164 ~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~ 224 (591)
T 2v1x_A 164 RRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCI 224 (591)
T ss_dssp TCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTC
T ss_pred cCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCC
Confidence 466666642221 11 22222333333332223445555555566666666666554
No 99
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.00 E-value=0.14 Score=49.01 Aligned_cols=76 Identities=9% Similarity=0.173 Sum_probs=63.9
Q ss_pred ccCcceEEEecchhhHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----CccCCCCCCC
Q 023157 150 LAITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----LARGIDVQQV 221 (286)
Q Consensus 150 ~~~~~~ivf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~Gidi~~~ 221 (286)
..+.+++|.+|++.-|..+++.++. .++.+..+||+++..++...++.+..|+.+|+|+|+. +.. ++..++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCc
Confidence 3567899999999999999999988 5678999999999989999999999999999999962 222 456678
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
+++|+
T Consensus 198 ~~lVi 202 (1104)
T 4ddu_A 198 DFVFV 202 (1104)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 88876
No 100
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=93.42 E-value=0.29 Score=47.08 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=62.9
Q ss_pred cCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-CCccCCCCCCCcEEE
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-LLARGIDVQQVSLVI 225 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gidi~~~~~vi 225 (286)
.+.+++|.+|++.-|...++.+++ .+..+..+++..+..++...++.+..|+.+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 456899999999888888777754 367889999999999999999999999999999995 455557777888777
Q ss_pred E
Q 023157 226 N 226 (286)
Q Consensus 226 ~ 226 (286)
+
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 5
No 101
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=93.29 E-value=0.41 Score=36.26 Aligned_cols=71 Identities=8% Similarity=0.221 Sum_probs=52.7
Q ss_pred cceEEEecchhhHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----C-ccCCCCCCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----L-ARGIDVQQV 221 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-~~Gidi~~~ 221 (286)
.+++|.++++.-+...++.+++. +..+..++|+.+...+... +..+..+|+|+|.. + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999998888776653 6789999999887665443 34567799999952 1 234667788
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
+++|+
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88875
No 102
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=92.92 E-value=0.62 Score=36.20 Aligned_cols=75 Identities=13% Similarity=0.277 Sum_probs=53.8
Q ss_pred hhccCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----C--ccCC
Q 023157 148 ETLAITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----L--ARGI 216 (286)
Q Consensus 148 ~~~~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~--~~Gi 216 (286)
....+.+++|.++++.-+...++.++.. +..+..++|+.+...+...+ .+..+|+|+|.. + ..++
T Consensus 107 ~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~ 182 (249)
T 3ber_A 107 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGF 182 (249)
T ss_dssp HSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTC
T ss_pred cCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCc
Confidence 3334567999999999988888777553 77889999998866554333 246899999951 1 1356
Q ss_pred CCCCCcEEEE
Q 023157 217 DVQQVSLVIN 226 (286)
Q Consensus 217 di~~~~~vi~ 226 (286)
++..++++|+
T Consensus 183 ~l~~~~~lVi 192 (249)
T 3ber_A 183 NLRALKYLVM 192 (249)
T ss_dssp CCTTCCEEEE
T ss_pred CccccCEEEE
Confidence 7778888875
No 103
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=92.35 E-value=0.37 Score=36.90 Aligned_cols=72 Identities=11% Similarity=0.061 Sum_probs=52.2
Q ss_pred ccCcceEEEecchhhHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----C-ccCCCC
Q 023157 150 LAITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----L-ARGIDV 218 (286)
Q Consensus 150 ~~~~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-~~Gidi 218 (286)
..+.+++|.++++.-+...++.++.. +..+..++|+.+..++...+ ...+|+|+|.. + ...+++
T Consensus 90 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~ 164 (230)
T 2oxc_A 90 NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNP 164 (230)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCG
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccc
Confidence 34568999999999999888877653 67788999998876654433 35789999962 1 234566
Q ss_pred CCCcEEEE
Q 023157 219 QQVSLVIN 226 (286)
Q Consensus 219 ~~~~~vi~ 226 (286)
..++++|+
T Consensus 165 ~~~~~lVi 172 (230)
T 2oxc_A 165 GSIRLFIL 172 (230)
T ss_dssp GGCCEEEE
T ss_pred ccCCEEEe
Confidence 67777775
No 104
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.61 E-value=0.65 Score=35.78 Aligned_cols=72 Identities=8% Similarity=0.100 Sum_probs=53.4
Q ss_pred cCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCc-cCCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLA-RGIDVQQ 220 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gidi~~ 220 (286)
.+.+++|.++++.-+..+++.++. .+..+..++|+.+...+...+.. ..+|+|+|+ .+. ...++.+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999998888776655 37889999999987766555543 478999995 222 2356778
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
++++|+
T Consensus 177 ~~~lVi 182 (242)
T 3fe2_A 177 TTYLVL 182 (242)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 888875
No 105
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=90.50 E-value=1.7 Score=32.22 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=50.4
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCcc-CCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLAR-GIDVQ 219 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gidi~ 219 (286)
.+.+++|.++++.-+...++.+++. +..+..++|+.+..+.... + .+..+|+|+|. .+.. ..++.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~ 145 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVD 145 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCcc
Confidence 3458999999999988888777542 5678889998876544322 2 35678999995 2222 34667
Q ss_pred CCcEEEE
Q 023157 220 QVSLVIN 226 (286)
Q Consensus 220 ~~~~vi~ 226 (286)
.++++|+
T Consensus 146 ~~~~lVi 152 (206)
T 1vec_A 146 HVQMIVL 152 (206)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7888875
No 106
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.85 E-value=1.2 Score=36.72 Aligned_cols=73 Identities=8% Similarity=0.207 Sum_probs=53.5
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC------CccCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL------LARGIDVQ 219 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gidi~ 219 (286)
.+.+++|.+|++.-+...++.+++. +..+..++|+.+.......+ ..+..+|+|+|.. ....++..
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~iiv~T~~~l~~~~~~~~~~~~ 151 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKNCPHIVVGTPGRILALARNKSLNLK 151 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHH---HHSCCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHH---hcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 3458999999999998888777653 67899999998876654433 4567899999952 12335677
Q ss_pred CCcEEEE
Q 023157 220 QVSLVIN 226 (286)
Q Consensus 220 ~~~~vi~ 226 (286)
.+++||+
T Consensus 152 ~~~~vVi 158 (391)
T 1xti_A 152 HIKHFIL 158 (391)
T ss_dssp TCSEEEE
T ss_pred ccCEEEE
Confidence 8888875
No 107
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=89.20 E-value=0.96 Score=34.37 Aligned_cols=72 Identities=8% Similarity=0.139 Sum_probs=47.9
Q ss_pred cCcceEEEecchhhHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec------CCccCCCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD------LLARGIDVQQV 221 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gidi~~~ 221 (286)
.+.+++|.++++.-+..+++.++. .+..+..++|+.+...+...+ . ...+|+|+|. .....+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 456899999999999988888776 367788888887655443333 2 3578999995 12234667788
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
+++|+
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88875
No 108
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=88.46 E-value=0.67 Score=35.09 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=45.1
Q ss_pred ccCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC------CccCCCCC
Q 023157 150 LAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL------LARGIDVQ 219 (286)
Q Consensus 150 ~~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gidi~ 219 (286)
..+.+++|.++++.-+...++.++. .+..+..++|+.+..++...+ . ..+|+|+|.. .....+..
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~iiv~Tp~~l~~~~~~~~~~~~ 154 (224)
T 1qde_A 80 VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVVGTPGRVFDNIQRRRFRTD 154 (224)
T ss_dssp CCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEEECHHHHHHHHHTTSSCCT
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEEEECHHHHHHHHHhCCcchh
Confidence 3456899999999998888877654 367788889887655443222 2 3789999952 12346667
Q ss_pred CCcEEEE
Q 023157 220 QVSLVIN 226 (286)
Q Consensus 220 ~~~~vi~ 226 (286)
.++++|+
T Consensus 155 ~~~~iVi 161 (224)
T 1qde_A 155 KIKMFIL 161 (224)
T ss_dssp TCCEEEE
T ss_pred hCcEEEE
Confidence 7888875
No 109
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=88.43 E-value=1.5 Score=32.54 Aligned_cols=72 Identities=13% Similarity=0.184 Sum_probs=51.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCc-cCCCCCCCc
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLA-RGIDVQQVS 222 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gidi~~~~ 222 (286)
.+.+++|.++++.-+...++.++.. +..+..++|+.+...+...+. ...+|+|+|. .+. ..+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 3568999999999999998888765 467888888877655444333 2578999995 122 235677788
Q ss_pred EEEE
Q 023157 223 LVIN 226 (286)
Q Consensus 223 ~vi~ 226 (286)
++|+
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 110
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=88.41 E-value=1 Score=34.60 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=44.8
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCcc-CCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLAR-GIDVQQ 220 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gidi~~ 220 (286)
.+.+++|.++++.-+...++.++.. +..+..++|+.+... ....+..+..+|+|+|. .+.. .++...
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 4568999999999999888877653 566777777765433 23344566789999994 2223 356677
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
++++|+
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888875
No 111
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=87.61 E-value=1.7 Score=33.54 Aligned_cols=71 Identities=11% Similarity=0.129 Sum_probs=50.0
Q ss_pred CcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----C-ccCCCCCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----L-ARGIDVQQV 221 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-~~Gidi~~~ 221 (286)
+.+++|.++++.-+...++.++. .+..+..++|+.+...+...+ ....+|+|+|.. + ...+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 45899999999998888877754 356788888887765543332 346789999951 1 223567778
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
+++|+
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88875
No 112
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=87.04 E-value=3.5 Score=26.92 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=37.8
Q ss_pred eEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCc
Q 023157 155 SVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSR 204 (286)
Q Consensus 155 ~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 204 (286)
.+||...-....++...++..|..+..++++.....|.+-++.|.....+
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvd 54 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVD 54 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCc
Confidence 35667777777778888888888888888888888888888888654433
No 113
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=85.40 E-value=3 Score=32.51 Aligned_cols=72 Identities=13% Similarity=0.155 Sum_probs=51.4
Q ss_pred cCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CC--ccCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LL--ARGIDVQ 219 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~--~~Gidi~ 219 (286)
.+.+++|.+|++.-|...++.+++ .+..+..+.|+.....+...+ .. ..+|+|+|+ .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GN-GINIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HH-CCSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cC-CCCEEEEcHHHHHHHHHccCCcccc
Confidence 456899999999999888877765 356778888888765544333 23 378999994 11 2246777
Q ss_pred CCcEEEE
Q 023157 220 QVSLVIN 226 (286)
Q Consensus 220 ~~~~vi~ 226 (286)
.++++|+
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 8888875
No 114
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=85.25 E-value=1.8 Score=33.02 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=49.3
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----Ccc--CCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----LAR--GIDVQ 219 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~--Gidi~ 219 (286)
.+.+++|.++++.-+...++.++.. +..+..++|+.+.......+ +..+|+|+|.. +.. .++..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 4568999999999998888877653 47788899987755443333 46799999951 112 35667
Q ss_pred CCcEEEE
Q 023157 220 QVSLVIN 226 (286)
Q Consensus 220 ~~~~vi~ 226 (286)
.++++|+
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7888775
No 115
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=84.25 E-value=3.2 Score=39.65 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=55.8
Q ss_pred cCcceEEEecchhhHHHHHHHHhc----CCC----eeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-CccC-CCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS----RDH----TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-LARG-IDVQQ 220 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~----~~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~G-idi~~ 220 (286)
.+.+++|.+|++.-|...++.++. .+. .+..++|+.+..++....+.+.. .+|+|+|+. +..- -++..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 456899999999999888887764 355 78999999999888888887776 899999951 1111 11557
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
++++|+
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 778875
No 116
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=83.45 E-value=0.43 Score=42.67 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=26.0
Q ss_pred CCCcEEEeCcHHHHHHHhcC------CCCCCCccEEEEehhhHhhc
Q 023157 30 AGVHVVVGTPGRVFDMLRRQ------SLRPDYIKMFVLDEADEMLS 69 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~~------~~~~~~~~~iIiDE~h~~~~ 69 (286)
..+||||++..-+++...+. ..... -.++||||||++.+
T Consensus 174 ~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~-~~ivI~DEAHNL~d 218 (620)
T 4a15_A 174 PDADIVIAPYAYFLNRSVAEKFLSHWGVSRN-QIVIILDEAHNLPD 218 (620)
T ss_dssp GGCSEEEEEHHHHTCHHHHHHHHHHHTCCGG-GEEEEETTGGGHHH
T ss_pred hcCCEEEeCchhhcCHHHHHHHHHhhccCcC-CeEEEEECCCchHH
Confidence 47899999987765543221 11222 36999999998765
No 117
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.16 E-value=8.6 Score=31.90 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=50.4
Q ss_pred cceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCcc-CCCCCCCc
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLAR-GIDVQQVS 222 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gidi~~~~ 222 (286)
.+++|.+|++.-+...++.++. .+..+..++|+.+..++...+ ....+|+|+|. .+.. .+++..++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL----ERGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh----hCCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 4799999999999988887764 367888999998866554333 23578999995 1222 35667788
Q ss_pred EEEE
Q 023157 223 LVIN 226 (286)
Q Consensus 223 ~vi~ 226 (286)
++|+
T Consensus 178 ~iVi 181 (417)
T 2i4i_A 178 YLVL 181 (417)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 118
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=82.89 E-value=5 Score=32.98 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=51.0
Q ss_pred cCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----C-ccCCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----L-ARGIDVQQ 220 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-~~Gidi~~ 220 (286)
.+.+++|.+|++.-+...++.+.. .+..+..++|+.+..+....+. ..+|+|+|.. + ...++...
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 456999999999988888776654 3678899999988766555444 4679999941 1 22355667
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
+++||+
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777775
No 119
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=82.72 E-value=4 Score=34.53 Aligned_cols=71 Identities=18% Similarity=0.187 Sum_probs=51.7
Q ss_pred CcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCcc-CCCCCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLAR-GIDVQQV 221 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gidi~~~ 221 (286)
+.+++|.++++.-|...++.+++. +..+..++|+.+..++...+ ....+|+|+|. .+.. .+++..+
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 458999999999999888877653 56788899998876654433 24679999995 2223 3567788
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
+++|+
T Consensus 205 ~~lVl 209 (434)
T 2db3_A 205 RFVVL 209 (434)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 88875
No 120
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=81.63 E-value=8.1 Score=32.56 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=52.3
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC-CC---eeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC------CccCCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR-DH---TVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL------LARGIDVQQ 220 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~-~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gidi~~ 220 (286)
.+.+++|.+|++.-+...++.+.+. +. .+..++|+.+..++..... ..+|+|+|.- ....++...
T Consensus 51 ~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv~T~~~l~~~~~~~~~~~~~ 125 (494)
T 1wp9_A 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIVATPQTIENDLLAGRISLED 125 (494)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSCCTTS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEEecHHHHHHHHhcCCcchhh
Confidence 5679999999999888888888765 44 8899999998776655443 4689999941 112355667
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
.++||+
T Consensus 126 ~~~vIi 131 (494)
T 1wp9_A 126 VSLIVF 131 (494)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 788875
No 121
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=80.87 E-value=3.1 Score=30.96 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=34.2
Q ss_pred CCccEEEEehhhHhhcccc--HHHHHHHHHhCCcCccEEEEEeecChhHHHH
Q 023157 54 DYIKMFVLDEADEMLSRGF--KDQIYDIFQLLPAKVQVGVFSATMPPEALEI 103 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~--~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 103 (286)
..+++||+||+-.....++ .+.+..++...+....+|+.+--+++.+.+.
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 4579999999986554442 3667777787776666666666666555543
No 122
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=80.62 E-value=10 Score=30.71 Aligned_cols=71 Identities=13% Similarity=0.211 Sum_probs=50.3
Q ss_pred cCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----C-ccCCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----L-ARGIDVQQ 220 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-~~Gidi~~ 220 (286)
++.+++|.+|++.-+...++.++. .+..+..++|+.........+. ..+|+|+|.. + ...+++..
T Consensus 73 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~ 147 (367)
T 1hv8_A 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKN 147 (367)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTS
T ss_pred CCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCccccc
Confidence 467899999999988888887765 3667888888887665444332 5789999952 1 12355667
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
.+++|+
T Consensus 148 ~~~iIi 153 (367)
T 1hv8_A 148 VKYFIL 153 (367)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 787775
No 123
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=80.41 E-value=7.3 Score=35.92 Aligned_cols=73 Identities=10% Similarity=0.090 Sum_probs=53.6
Q ss_pred hhccCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-C----------
Q 023157 148 ETLAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-L---------- 212 (286)
Q Consensus 148 ~~~~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~---------- 212 (286)
....+..++|.++++.-|...++++.. .|+++..+.|+++..+|.... ..+|+++|+. +
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 445677899999999999888877654 488999999999987665442 3689999951 1
Q ss_pred --ccCCCCCCCcEEEE
Q 023157 213 --ARGIDVQQVSLVIN 226 (286)
Q Consensus 213 --~~Gidi~~~~~vi~ 226 (286)
...++...+.++|+
T Consensus 194 ~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred cchhhhcccCCCEEEE
Confidence 12356667777764
No 124
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=79.67 E-value=7.4 Score=35.89 Aligned_cols=73 Identities=8% Similarity=-0.013 Sum_probs=52.2
Q ss_pred hhccCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCC------ccC--
Q 023157 148 ETLAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL------ARG-- 215 (286)
Q Consensus 148 ~~~~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~------~~G-- 215 (286)
....+..++|.++|+.-|...++.+.. .|+++..+.|+++...+.... ..+|+|+|+.- ..+
T Consensus 111 ~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~ 184 (853)
T 2fsf_A 111 NALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMA 184 (853)
T ss_dssp HHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhh
Confidence 344567899999999988887776654 488999999999976554433 37899999621 122
Q ss_pred -----CCCCCCcEEEE
Q 023157 216 -----IDVQQVSLVIN 226 (286)
Q Consensus 216 -----idi~~~~~vi~ 226 (286)
+....+.++|+
T Consensus 185 ~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 185 FSPEERVQRKLHYALV 200 (853)
T ss_dssp SSGGGCCCCSCCEEEE
T ss_pred ccHhHhcccCCcEEEE
Confidence 45567777764
No 125
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=79.10 E-value=6.6 Score=32.42 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=50.4
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----C-ccCCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----L-ARGIDVQQ 220 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-~~Gidi~~ 220 (286)
.+.+++|.++++.-+...++.++.. +..+..++|+......... ..+..+|+|+|.. + ....++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR----LNETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH----TTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH----hcCCCCEEEEchHHHHHHHHhCCccccc
Confidence 4558999999999888887777643 6778888888775543222 2457789999941 2 23356677
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
+++||+
T Consensus 164 ~~~vIi 169 (400)
T 1s2m_A 164 CSLFIM 169 (400)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888875
No 126
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=78.85 E-value=2.3 Score=34.05 Aligned_cols=69 Identities=10% Similarity=0.029 Sum_probs=47.6
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----C-c-cCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----L-A-RGIDV 218 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-~-~Gidi 218 (286)
.+.+++|.+|++.-|..+++.++.. +..+....++.+.... .....+|+|+|+. + . ..+++
T Consensus 161 ~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l 233 (300)
T 3fmo_B 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDP 233 (300)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCG
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCCh
Confidence 4447999999999999887776542 4567777776543221 1456689999962 1 2 35677
Q ss_pred CCCcEEEE
Q 023157 219 QQVSLVIN 226 (286)
Q Consensus 219 ~~~~~vi~ 226 (286)
..+.++|+
T Consensus 234 ~~l~~lVl 241 (300)
T 3fmo_B 234 KKIKVFVL 241 (300)
T ss_dssp GGCSEEEE
T ss_pred hhceEEEE
Confidence 88888886
No 127
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=78.78 E-value=1.6 Score=32.95 Aligned_cols=72 Identities=17% Similarity=0.182 Sum_probs=47.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC--------CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCcc-CC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR--------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLAR-GI 216 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gi 216 (286)
.+.+++|.++++.-+...++.+++. +..+..++|+.+..+.. +. ..+..+|+|+|. .+.. .+
T Consensus 71 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~-~~~~~~Iiv~Tp~~l~~~l~~~~~ 146 (219)
T 1q0u_A 71 AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EK-LNVQPHIVIGTPGRINDFIREQAL 146 (219)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CC-CSSCCSEEEECHHHHHHHHHTTCC
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HH-cCCCCCEEEeCHHHHHHHHHcCCC
Confidence 3568999999999988888776542 56778888886543321 11 124678999995 2222 35
Q ss_pred CCCCCcEEEE
Q 023157 217 DVQQVSLVIN 226 (286)
Q Consensus 217 di~~~~~vi~ 226 (286)
++..++++|+
T Consensus 147 ~~~~~~~lVi 156 (219)
T 1q0u_A 147 DVHTAHILVV 156 (219)
T ss_dssp CGGGCCEEEE
T ss_pred CcCcceEEEE
Confidence 6667777775
No 128
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=77.61 E-value=3.2 Score=36.07 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=49.7
Q ss_pred CcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccC-C-CCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARG-I-DVQQ 220 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-i-di~~ 220 (286)
+.+++|.+|++.-+...++.+++. +..+..++|+.+...+...+. +..+|+|+|. .+..+ + ++..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 678999999988888777766554 889999999987655433332 2478999994 22222 3 4556
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
+++||+
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 778775
No 129
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=77.44 E-value=2 Score=28.29 Aligned_cols=37 Identities=3% Similarity=0.055 Sum_probs=31.8
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
+..++++||.+-..+...+..|+..|+++..+.|++.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4468999999988899999999999998888888864
No 130
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=77.36 E-value=2.2 Score=27.62 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=31.4
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
+..++++||.+-..+...+..|+..|+++..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 3468999999988899999999999998888888753
No 131
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=77.25 E-value=8.8 Score=35.66 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=53.8
Q ss_pred HhhccCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-C-----c---
Q 023157 147 YETLAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-L-----A--- 213 (286)
Q Consensus 147 ~~~~~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~-----~--- 213 (286)
+....+..++|.++++.-|...++++.. .|+++..+.|+++..+|.... ..+|+++|+. + .
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m 220 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNM 220 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhh
Confidence 3445667899999999988887776654 489999999999987665543 3689999962 1 1
Q ss_pred ----cCCCCCCCcEEEE
Q 023157 214 ----RGIDVQQVSLVIN 226 (286)
Q Consensus 214 ----~Gidi~~~~~vi~ 226 (286)
..++...+.++|+
T Consensus 221 ~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 221 AHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp CSSGGGCCCCCCCEEEE
T ss_pred hccHhhhccCCCCEEEE
Confidence 1355667777764
No 132
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=77.19 E-value=2.1 Score=27.85 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=31.3
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
+..++++||.+-..+...+..|+..|+++..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3468999999988899999999999998888888753
No 133
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=76.92 E-value=8.1 Score=36.05 Aligned_cols=58 Identities=10% Similarity=-0.014 Sum_probs=45.6
Q ss_pred HhhccCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec
Q 023157 147 YETLAITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 210 (286)
Q Consensus 147 ~~~~~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 210 (286)
+....+..++|.++|+.-|...++.+.. .|+++..+.|+++..++.... ..+|+++|+
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 4455677899999999888877776644 589999999999977666554 378999995
No 134
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=76.77 E-value=8.5 Score=31.85 Aligned_cols=73 Identities=12% Similarity=0.257 Sum_probs=50.6
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCcc-CCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLAR-GIDVQQ 220 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gidi~~ 220 (286)
.+.+++|.++++.-+...++.++.. +..+...+++.+.... .+....+..+|+|+|. .+.. .++...
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 5678999999999988888877653 5667777777654433 4455567889999994 2222 245666
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
+++||+
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777764
No 135
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=76.73 E-value=3.9 Score=35.51 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=47.3
Q ss_pred CcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccC-C-CCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARG-I-DVQQ 220 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-i-di~~ 220 (286)
+.+++|.+|++.-+...++.++.. +..+..++|+.+...+...+. ...+|+|+|. .+..+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999998888877777654 889999999987655433332 2478999995 22223 3 5667
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
+++||+
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888875
No 136
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=76.48 E-value=2.3 Score=27.87 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=30.4
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDM 186 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 186 (286)
+..++++||.+-..+...+..|++.|+.+..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 346899999998888899999999999888777765
No 137
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=76.11 E-value=6.1 Score=36.43 Aligned_cols=71 Identities=13% Similarity=0.168 Sum_probs=47.1
Q ss_pred CcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----CccC-C-CCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----LARG-I-DVQQ 220 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~G-i-di~~ 220 (286)
+.+++|.+|++.-+...++.++.. +..+..++|+.+...+...+. +..+|+|+|.. +..+ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999998888877776654 889999999987665433332 25789999941 2222 3 4556
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
+++||+
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788875
No 138
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=75.42 E-value=1.8 Score=32.36 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=22.2
Q ss_pred cEEEEehhhHhhcc---cc--HHHHHHHHHhCCcCccEEEEEeec
Q 023157 57 KMFVLDEADEMLSR---GF--KDQIYDIFQLLPAKVQVGVFSATM 96 (286)
Q Consensus 57 ~~iIiDE~h~~~~~---~~--~~~~~~i~~~~~~~~~~i~~SAT~ 96 (286)
.+|||||||.+... +. ...+..+........+++++|-.+
T Consensus 89 ~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~ 133 (199)
T 2r2a_A 89 SIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGP 133 (199)
T ss_dssp CEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCG
T ss_pred eEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCH
Confidence 58999999987422 11 122222323333455677777663
No 139
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=73.94 E-value=22 Score=25.54 Aligned_cols=65 Identities=17% Similarity=0.317 Sum_probs=51.0
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEEccCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPT 231 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~~~~~~ 231 (286)
.+.+.|.+.+..++..+.+.|...|+.+..+.++.. .....|.|+|--...|+.+ +.|+++++..
T Consensus 61 ~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~~~ 125 (174)
T 3dmn_A 61 RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNANQ 125 (174)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETCBT
T ss_pred CCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecCCc
Confidence 467889999999999999999999888877765432 1234799999999999876 7888877643
No 140
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=73.74 E-value=12 Score=30.93 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=51.2
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCcc-CCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLAR-GIDVQQ 220 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gidi~~ 220 (286)
.+.+++|.+|++.-+...++.++.. +..+..++|+.+..++...+. ...+|+|+|. .+.. .++...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 4579999999999999888877643 567888889888766544433 2458999994 2222 356667
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
++++|+
T Consensus 180 ~~~vVi 185 (410)
T 2j0s_A 180 IKMLVL 185 (410)
T ss_dssp CCEEEE
T ss_pred eeEEEE
Confidence 777775
No 141
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=73.47 E-value=2.1 Score=32.85 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=47.0
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CC---ccCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LL---ARGIDV 218 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~---~~Gidi 218 (286)
.+.+++|.++++.-+...++.+++. +..+..++++.... ........+..+|+|+|. .+ ...+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA---KKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH---TTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH---HHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 3457999999999999888887654 55566555542211 111122355679999994 11 124778
Q ss_pred CCCcEEEE
Q 023157 219 QQVSLVIN 226 (286)
Q Consensus 219 ~~~~~vi~ 226 (286)
.+++++|+
T Consensus 174 ~~~~~lVi 181 (245)
T 3dkp_A 174 ASVEWLVV 181 (245)
T ss_dssp TTCCEEEE
T ss_pred ccCcEEEE
Confidence 88888875
No 142
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=73.30 E-value=7.7 Score=28.61 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=25.7
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
..-.+|++||+|.+.... ...+..++...+.+..+++.|..
T Consensus 101 ~~~~vliiDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~~~~ 141 (226)
T 2chg_A 101 APFKIIFLDEADALTADA-QAALRRTMEMYSKSCRFILSCNY 141 (226)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEESC
T ss_pred cCceEEEEeChhhcCHHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence 445799999999865432 44555666665555555555443
No 143
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=73.06 E-value=4.7 Score=35.87 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=28.2
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
.++++||||++.+ + ...+..++..++...|++++.-+
T Consensus 262 ~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 262 HLDVLVVDEASMI-D---LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp SCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEEEEEECT
T ss_pred CCCEEEEechhhC-C---HHHHHHHHHhCCCCCEEEEEcch
Confidence 5789999999954 3 35667778888888888887654
No 144
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=70.50 E-value=28 Score=25.70 Aligned_cols=114 Identities=8% Similarity=0.157 Sum_probs=71.7
Q ss_pred cceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec----CCccCCCCCCCcEEEEcc
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD----LLARGIDVQQVSLVINYD 228 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~----~~~~Gidi~~~~~vi~~~ 228 (286)
.+++++++.....+.+.+...+.+..+.++.+.+.. -....+.. ....+|+||-. .+..-+++| .++
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~--~v~~a~~~-~~~~dVIISRGgta~~lr~~~~iP------VV~ 75 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEKNFIPITKTASLTR--ASKIAFGL-QDEVDAIISRGATSDYIKKSVSIP------SIS 75 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHH--HHHHHHHH-TTTCSEEEEEHHHHHHHHTTCSSC------EEE
T ss_pred CcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHH--HHHHHHHh-cCCCeEEEECChHHHHHHHhCCCC------EEE
Confidence 477788888777765555555555567777776543 33445555 66788999974 344445443 345
Q ss_pred CCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhccc
Q 023157 229 LPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 277 (286)
Q Consensus 229 ~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (286)
.+.|.-++++.+-++-+.+ +++.++..+.-......+++.++.++..
T Consensus 76 I~~s~~Dil~al~~a~~~~--~kIavvg~~~~~~~~~~~~~ll~~~i~~ 122 (196)
T 2q5c_A 76 IKVTRFDTMRAVYNAKRFG--NELALIAYKHSIVDKHEIEAMLGVKIKE 122 (196)
T ss_dssp ECCCHHHHHHHHHHHGGGC--SEEEEEEESSCSSCHHHHHHHHTCEEEE
T ss_pred EcCCHhHHHHHHHHHHhhC--CcEEEEeCcchhhHHHHHHHHhCCceEE
Confidence 5677888888888876543 3444445455455566777777766543
No 145
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=69.70 E-value=3.3 Score=26.36 Aligned_cols=35 Identities=3% Similarity=0.005 Sum_probs=29.9
Q ss_pred cceEEEecchhhHHHHHHHHhcCCCeeEEecCCCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
.++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988888999999999988777888764
No 146
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=69.39 E-value=12 Score=26.55 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=37.1
Q ss_pred cCceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehh
Q 023157 8 LGVKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEA 64 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~ 64 (286)
.|+.+..++|+.+..++...+. +..+|+|+|. .....+++..+++||.-+.
T Consensus 58 ~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 58 LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD------VAARGIDIENISLVINYDL 112 (163)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTTTCCCSCCSEEEESSC
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC------hhhcCCchhcCCEEEEeCC
Confidence 4789999999988776665443 4689999993 2335677888888886443
No 147
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=68.19 E-value=4 Score=26.71 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=30.5
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
+..++++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3468999999988899999999999985 777888753
No 148
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=67.07 E-value=4.2 Score=32.63 Aligned_cols=82 Identities=9% Similarity=0.021 Sum_probs=44.4
Q ss_pred ceEEEEEcCcchHHHH--HHHh--------CCCcEEEeCcH-------HHHHHH---hcCCCCCCCccEEEEehhhHhhc
Q 023157 10 VKVHACVGGTSVREDQ--RILQ--------AGVHVVVGTPG-------RVFDML---RRQSLRPDYIKMFVLDEADEMLS 69 (286)
Q Consensus 10 ~~~~~~~g~~~~~~~~--~~~~--------~~~~iii~Tp~-------~l~~~~---~~~~~~~~~~~~iIiDE~h~~~~ 69 (286)
.+...++|........ ..+. ..++++...|+ .+.++. ...+. ....+++||||+|.+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~-~~~~kvviIdead~lt~ 96 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPE-LYTRKYVIVHDCERMTQ 96 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCS-SSSSEEEEETTGGGBCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccc-cCCceEEEeccHHHhCH
Confidence 4677778866543321 1111 24678777653 122322 22222 34468999999998754
Q ss_pred cccHHHHHHHHHhCCcCccEEEEE
Q 023157 70 RGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 70 ~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
.. .+.+.+.+..-++...++++|
T Consensus 97 ~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 97 QA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp HH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred HH-HHHHHHHHhCCCCCeEEEEEE
Confidence 43 345556666555455455544
No 149
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=66.84 E-value=6.4 Score=26.67 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=29.7
Q ss_pred cceEEEe-cchhhHHHHHHHHhcCCCeeEEecCCCC
Q 023157 153 TQSVIFV-NTRRKVDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 153 ~~~ivf~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
.++++|| .+-..+...+..|+..|+++..+.|++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 6899999 4777788899999999998888888864
No 150
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=66.54 E-value=16 Score=29.08 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=49.7
Q ss_pred CcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----Cc-cCCCCCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----LA-RGIDVQQV 221 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~-~Gidi~~~ 221 (286)
+.+++|.+|++.-+...++.+++ .+..+..++|+.+..++...+ . ..+|+|+|.. .. ..++....
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 57899999999999888888864 356888999998866544332 2 3789999952 12 23456667
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
++||+
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77765
No 151
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=66.43 E-value=2.8 Score=37.86 Aligned_cols=70 Identities=21% Similarity=0.249 Sum_probs=46.6
Q ss_pred cceEEEecchhhHHHH-HHHHhcCC---CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----C-------ccCC
Q 023157 153 TQSVIFVNTRRKVDWL-TDKMRSRD---HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----L-------ARGI 216 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l-~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-------~~Gi 216 (286)
.++||.+|++.-+... ++.+++.. +.+..++|+.+..++...+. +..+|+|+|.. + ...+
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~ 132 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGV 132 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccce
Confidence 7899999999888877 77776643 78999999987554433332 57899999951 1 2235
Q ss_pred CCCCCcEEEE
Q 023157 217 DVQQVSLVIN 226 (286)
Q Consensus 217 di~~~~~vi~ 226 (286)
....+++||+
T Consensus 133 ~~~~~~lvVi 142 (699)
T 4gl2_A 133 QLSDFSLIII 142 (699)
T ss_dssp CGGGCSEEEE
T ss_pred ecccCcEEEE
Confidence 6677888875
No 152
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=66.19 E-value=8.7 Score=28.06 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=17.0
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHH
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
..++|++||+|.+ ...+...+..+..
T Consensus 76 ~~dvviIDE~Q~~-~~~~~~~l~~l~~ 101 (184)
T 2orw_A 76 DTRGVFIDEVQFF-NPSLFEVVKDLLD 101 (184)
T ss_dssp TEEEEEECCGGGS-CTTHHHHHHHHHH
T ss_pred CCCEEEEECcccC-CHHHHHHHHHHHH
Confidence 4689999999975 3334455555544
No 153
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.64 E-value=5.4 Score=32.40 Aligned_cols=42 Identities=10% Similarity=0.271 Sum_probs=27.8
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecC
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
+.+++|+||+|.+ +......+.+++...+....+++.|..+.
T Consensus 134 ~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 134 RYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 4579999999984 44445666677777665655666555443
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=65.61 E-value=10 Score=30.16 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=25.3
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
..-.++|+||+|.+.... ...+..++...+....+++.|.
T Consensus 109 ~~~~vliiDe~~~l~~~~-~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDA-QQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCHHH-HHHHHHHHHhcCCCCeEEEEeC
Confidence 345799999999875433 3455566666555555555443
No 155
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=65.29 E-value=7.4 Score=27.18 Aligned_cols=37 Identities=0% Similarity=-0.053 Sum_probs=30.4
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCC-eeEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDH-TVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 187 (286)
+..+++|||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 456899999998788899999999998 5888889874
No 156
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=65.19 E-value=12 Score=28.03 Aligned_cols=48 Identities=29% Similarity=0.369 Sum_probs=36.2
Q ss_pred cCceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEE
Q 023157 8 LGVKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVL 61 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIi 61 (286)
.|+.+..+||+.+..++...+. +..+|+|+|. .....+++..+++||.
T Consensus 54 ~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 54 LGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQVDLVVH 105 (212)
T ss_dssp HTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCCBSEEEE
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCccCcEEEE
Confidence 4788999999998777665553 4788999993 3345678888888874
No 157
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=64.12 E-value=3.6 Score=27.81 Aligned_cols=37 Identities=11% Similarity=-0.007 Sum_probs=30.2
Q ss_pred cCcceEEEecchhh--HHHHHHHHhcCCCeeEEecCCCC
Q 023157 151 AITQSVIFVNTRRK--VDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~--~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
+..++++||.+-.. +...+..|+..|+.+..+.|++.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 34679999988766 78899999999999888888753
No 158
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=63.81 E-value=59 Score=26.55 Aligned_cols=60 Identities=18% Similarity=0.117 Sum_probs=32.9
Q ss_pred cccccC--ceEEEEEcCcchHHHH----HHHhCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEeh
Q 023157 4 LGDYLG--VKVHACVGGTSVREDQ----RILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDE 63 (286)
Q Consensus 4 ~~~~~~--~~~~~~~g~~~~~~~~----~~~~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE 63 (286)
..+.+| +.+..+.+.....+.. ....+++++||++...+.+.+..-.....++.++++|-
T Consensus 53 ~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA~~~Pdv~fv~id~ 118 (356)
T 3s99_A 53 LVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVKVAKKFPDVKFEHATG 118 (356)
T ss_dssp HHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHHHHTTCTTSEEEEESC
T ss_pred HHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 344556 6655555433322222 23456899999998666655533112233456777775
No 159
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=63.48 E-value=16 Score=26.74 Aligned_cols=50 Identities=24% Similarity=0.313 Sum_probs=36.3
Q ss_pred cCceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEeh
Q 023157 8 LGVKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDE 63 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE 63 (286)
.|+++..++|+.+..++...+. +..+|+|+| +.+. ..+++.++++||.=+
T Consensus 77 ~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v~~VI~~d 130 (191)
T 2p6n_A 77 KGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAIQHVINYD 130 (191)
T ss_dssp HTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCCSEEEESS
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccCCEEEEeC
Confidence 4788999999988776665443 478999999 3333 356777888887643
No 160
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=63.44 E-value=18 Score=28.10 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=24.7
Q ss_pred ccEEEEehhhHhhcc------ccHHHHHHHHHhCC----cCccEEEEEeecChh
Q 023157 56 IKMFVLDEADEMLSR------GFKDQIYDIFQLLP----AKVQVGVFSATMPPE 99 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~------~~~~~~~~i~~~~~----~~~~~i~~SAT~~~~ 99 (286)
..+|++||+|.+... .....+..+...+. ...+++++.+|-.+.
T Consensus 125 ~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 125 LSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp EEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred CcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 479999999987321 12223333333332 344566676776554
No 161
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=63.04 E-value=5.4 Score=27.84 Aligned_cols=37 Identities=8% Similarity=0.043 Sum_probs=30.8
Q ss_pred cCcceEEEecch--hhHHHHHHHHhcCCCeeEEecCCCC
Q 023157 151 AITQSVIFVNTR--RKVDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
+..+++|||.+- ..+...+..|+..|+++..+.|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 345789999887 5788899999999999888888864
No 162
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=62.73 E-value=7.5 Score=34.32 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=25.0
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
..++|||||++.+. ...+..+++.++...+++++.-
T Consensus 279 ~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvGD 314 (574)
T 3e1s_A 279 PYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVGD 314 (574)
T ss_dssp SCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEEC
T ss_pred cCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEec
Confidence 46899999999753 3455566777776666666543
No 163
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=62.59 E-value=6 Score=31.77 Aligned_cols=43 Identities=14% Similarity=0.303 Sum_probs=23.3
Q ss_pred ccEEEEehhhHhhcc-ccHHHHHHHHHhCCcCccEEEEEeecCh
Q 023157 56 IKMFVLDEADEMLSR-GFKDQIYDIFQLLPAKVQVGVFSATMPP 98 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 98 (286)
.+++++||+|.+... .....+..++.........+.++++.++
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 479999999987642 1223333443332222234556666443
No 164
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=62.44 E-value=23 Score=25.26 Aligned_cols=51 Identities=14% Similarity=0.069 Sum_probs=36.9
Q ss_pred cCceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehh
Q 023157 8 LGVKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEA 64 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~ 64 (286)
.|+.+..++|+.+..++...+. +..+|+|+|. .....+++..+++||.-+.
T Consensus 54 ~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------~~~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 54 QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERVNIAFNYDM 108 (172)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS------CCSTTCCGGGCSEEEESSC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC------chhcCcchhhCCEEEEECC
Confidence 4789999999988776665443 4789999994 2334567777888886443
No 165
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=62.40 E-value=8.8 Score=26.54 Aligned_cols=41 Identities=10% Similarity=-0.015 Sum_probs=24.1
Q ss_pred cEEEEehhhHhhccccHHHHHHHHHh-CCcCccEEEEEeecCh
Q 023157 57 KMFVLDEADEMLSRGFKDQIYDIFQL-LPAKVQVGVFSATMPP 98 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~ 98 (286)
+.+++||+|.+.... ...+..++.. .+.+.++|+.|.....
T Consensus 77 ~~l~lDei~~l~~~~-q~~Ll~~l~~~~~~~~~iI~~tn~~~~ 118 (143)
T 3co5_A 77 GVLYVGDIAQYSRNI-QTGITFIIGKAERCRVRVIASCSYAAG 118 (143)
T ss_dssp SEEEEEECTTCCHHH-HHHHHHHHHHHTTTTCEEEEEEEECTT
T ss_pred CeEEEeChHHCCHHH-HHHHHHHHHhCCCCCEEEEEecCCCHH
Confidence 689999999775443 2333333333 2345667776665543
No 166
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=62.38 E-value=2.8 Score=29.54 Aligned_cols=43 Identities=7% Similarity=0.169 Sum_probs=23.5
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCc-CccEEEEEeecC
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPA-KVQVGVFSATMP 97 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT~~ 97 (286)
.+.+++|+||.+.+.... ...+..+++.+.. ...++++|+..+
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 346899999999754433 3444444443322 233355555543
No 167
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=62.30 E-value=7.4 Score=27.97 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=37.2
Q ss_pred ccCceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEeh
Q 023157 7 YLGVKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDE 63 (286)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE 63 (286)
..|+.+..++|+.+..++...+. +..+|+|+|. .....+++..+++||.-+
T Consensus 56 ~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~~~Vi~~d 110 (175)
T 2rb4_A 56 QDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQVTIVVNFD 110 (175)
T ss_dssp TTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTEEEEEESS
T ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccCCEEEEeC
Confidence 35788999999998777665443 4789999993 334567788888888533
No 168
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=62.18 E-value=7.4 Score=24.02 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=28.0
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
+..++++||.+-..+...+..|++.|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4568999999988888999999998875 4444 6643
No 169
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=61.50 E-value=4.6 Score=32.42 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=25.1
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
..+++++||+|.+........+..++...+.+.++++.|.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 5689999999987623234555555555555565555443
No 170
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=61.40 E-value=9.2 Score=25.07 Aligned_cols=37 Identities=11% Similarity=0.031 Sum_probs=30.6
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
+..++++||.+-..+...+..|+..|+....+.|++.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 4568999999988888999999999886577778764
No 171
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=61.39 E-value=18 Score=25.55 Aligned_cols=51 Identities=12% Similarity=0.191 Sum_probs=36.6
Q ss_pred cCceEEEEEcCcchHHHHHHHh----CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehh
Q 023157 8 LGVKVHACVGGTSVREDQRILQ----AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEA 64 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~~----~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~ 64 (286)
.|+.+..++|+.+..++...+. +..+|+|+|. .....+++..+++||.-+.
T Consensus 53 ~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 53 DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDVQQVSLVINYDL 107 (165)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCCCCSCSEEEESSC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------hhhcCCCcccCCEEEEeCC
Confidence 4788999999988776665443 4789999993 2334567778888876443
No 172
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=61.30 E-value=45 Score=25.24 Aligned_cols=63 Identities=14% Similarity=0.106 Sum_probs=43.9
Q ss_pred cchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCCHHHHHHHHHHhhcCCCcEEEEec
Q 023157 134 EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMDQNTRDIIMREFRSGSSRVLITTD 210 (286)
Q Consensus 134 ~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 210 (286)
+...-|.......+... +.+++++++++.-+...++.+.+.+.. +..++++.. ...+|+|+|.
T Consensus 116 ~tG~GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 116 PTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp SSSTTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCCCHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 33333444333333333 578999999999999999988887777 888888753 2567888884
No 173
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=61.15 E-value=5.7 Score=27.41 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=31.3
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCC-eeEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDH-TVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 187 (286)
+..+++|||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 456899999998888899999999998 5888888864
No 174
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=60.53 E-value=7.3 Score=36.68 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=45.8
Q ss_pred CcceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccC-C-CCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARG-I-DVQQ 220 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-i-di~~ 220 (286)
+.+++|.+|++.-+...++.++.. ++.+..++|+.+...+...+. +..+|+|+|. .+..+ + .+..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 678999999998888877766653 889999999986554433222 2468999994 12222 2 4556
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
++++|+
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777775
No 175
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=59.62 E-value=7.7 Score=29.04 Aligned_cols=38 Identities=13% Similarity=0.301 Sum_probs=21.5
Q ss_pred ccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe
Q 023157 56 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
-.+||+||+|.+.... ...+...+...+....+++.|.
T Consensus 127 ~~vlviDe~~~l~~~~-~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 127 FKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SEEEEEETGGGSCHHH-HHHHHHHHHSCCTTEEEEEEES
T ss_pred ceEEEEECcccccHHH-HHHHHHHHhcCCCceEEEEEeC
Confidence 4699999999764332 3444444444444444444443
No 176
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=59.22 E-value=6.8 Score=31.73 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=23.2
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEee
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
....++||||+|.+.... .+.+.+.+..-+.+..++++|..
T Consensus 107 ~~~kvviIdead~l~~~a-~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAA-ANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp SSCEEEEESCGGGBCHHH-HHHHHHHHTSCCTTEEEEEEESC
T ss_pred CCcEEEEECchhhcCHHH-HHHHHHHhcCCCCCeEEEEEeCC
Confidence 346899999999875433 33444444443334444444443
No 177
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=58.96 E-value=15 Score=33.07 Aligned_cols=70 Identities=19% Similarity=0.208 Sum_probs=48.2
Q ss_pred cceEEEecchhhHHHHHHHHhcC----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccC-C-CCCCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSR----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARG-I-DVQQV 221 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-i-di~~~ 221 (286)
.+++|.+|++.-+...++.+++. ++.+..++|+.+...+...+. ...+|+|+|. .+..+ + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 68999999988877777666553 788999999886543332222 2578999995 22333 3 56677
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
++||+
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88875
No 178
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=58.85 E-value=32 Score=29.07 Aligned_cols=46 Identities=15% Similarity=0.179 Sum_probs=39.0
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCCHHHHHHHHHHhhcCCCcEEEEec
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMDQNTRDIIMREFRSGSSRVLITTD 210 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 210 (286)
+.+++|.+|++.-+...++.+.+.+.. +..++|+.+. ..+|+|+|.
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~ 179 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTY 179 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEc
Confidence 579999999999999999999888888 9999998652 467888884
No 179
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=58.32 E-value=5.5 Score=26.03 Aligned_cols=37 Identities=8% Similarity=0.061 Sum_probs=30.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
+..++++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 4568999999988889999999999984 778888764
No 180
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=58.12 E-value=6 Score=26.92 Aligned_cols=37 Identities=11% Similarity=0.040 Sum_probs=30.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
+..++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988888899999988874 788888864
No 181
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.74 E-value=18 Score=29.17 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=25.9
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
...+++|+||+|.+.... ...+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAA-QNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 346899999999775432 455666667666666555544
No 182
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=57.38 E-value=12 Score=27.51 Aligned_cols=71 Identities=20% Similarity=0.246 Sum_probs=41.8
Q ss_pred CcceEEEecchhhHHH-HHHHHhc---CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----Ccc-------C
Q 023157 152 ITQSVIFVNTRRKVDW-LTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----LAR-------G 215 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~-l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~-------G 215 (286)
+.+++|.++++..+.. +.+.+.. .+..+..++|+.+...+...+. +..+|+|+|.. +.. +
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 157 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAG 157 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-------C
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhccCcccccc
Confidence 5789999999888776 5544443 3678888888764332221111 24689999952 111 2
Q ss_pred CCCCCCcEEEE
Q 023157 216 IDVQQVSLVIN 226 (286)
Q Consensus 216 idi~~~~~vi~ 226 (286)
+.+.++++||+
T Consensus 158 ~~~~~~~~iIi 168 (216)
T 3b6e_A 158 VQLSDFSLIII 168 (216)
T ss_dssp CCGGGCSEEEE
T ss_pred cchhcccEEEE
Confidence 45556677765
No 183
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=57.16 E-value=23 Score=28.84 Aligned_cols=68 Identities=12% Similarity=0.153 Sum_probs=46.2
Q ss_pred cCcceEEEecchhhHHHHHHHHhc----CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----C-ccCCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS----RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----L-ARGIDVQQ 220 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-~~Gidi~~ 220 (286)
.+.+++|.+|++.-+...++.+++ .+..+...+++..... .....+|+|+|.. + ....++..
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 145 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRKLMQLQK 145 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTTCBCCTT
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcCCccccc
Confidence 456899999999999888887765 3456666666543211 2336789999952 1 23456777
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
+++||+
T Consensus 146 ~~~iIi 151 (395)
T 3pey_A 146 IKIFVL 151 (395)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888775
No 184
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=56.93 E-value=29 Score=26.28 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=18.8
Q ss_pred EEeCcHHHHHHHhcCCCCCCCccEEEEehhhHh
Q 023157 35 VVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 67 (286)
Q Consensus 35 ii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~ 67 (286)
-+.+.+.+...+... ..-...++|||||++.+
T Consensus 70 ~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 70 EVESAPEILNYIMSN-SFNDETKVIGIDEVQFF 101 (223)
T ss_dssp EESSTHHHHHHHHST-TSCTTCCEEEECSGGGS
T ss_pred ccCCHHHHHHHHHHH-hhCCCCCEEEEecCccC
Confidence 344444555544432 11234689999999964
No 185
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=56.79 E-value=8.1 Score=26.57 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=30.5
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
+..++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988888999999999985 777888753
No 186
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=56.73 E-value=13 Score=35.74 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=48.6
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccC-CCCCCCcEE
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARG-IDVQQVSLV 224 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-idi~~~~~v 224 (286)
.+.+++|.+|++.-+...++.++.....+..++|+.+ .+++.+|+|+|+ .+..+ ..+.++.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 4568999999999999999999876558889999876 346789999993 33333 224456666
Q ss_pred EE
Q 023157 225 IN 226 (286)
Q Consensus 225 i~ 226 (286)
|+
T Consensus 295 VI 296 (1108)
T 3l9o_A 295 IF 296 (1108)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 187
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=56.26 E-value=9.8 Score=26.02 Aligned_cols=37 Identities=8% Similarity=0.049 Sum_probs=30.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCC-eeEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDH-TVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 187 (286)
+..+++|||.+-..+...+..|+..|+ ++..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 456899999998888888999998898 4788888874
No 188
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=56.25 E-value=11 Score=30.49 Aligned_cols=42 Identities=7% Similarity=0.107 Sum_probs=22.9
Q ss_pred ccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecC
Q 023157 56 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
.-+|++||+|.+.+......+..+...-..+.-+|++++|+.
T Consensus 133 ~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 133 KTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp EEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred ceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 358999999988722211222222222222445677788864
No 189
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=56.20 E-value=10 Score=30.02 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=22.0
Q ss_pred cEEEEehhhHhhcc--------ccHHHHHHHHHhCCcCccEEEEEee
Q 023157 57 KMFVLDEADEMLSR--------GFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 57 ~~iIiDE~h~~~~~--------~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
++|++||+|.+... .....+..++...+.+..+++.|.+
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 69999999987421 1224444555554444544444443
No 190
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=55.33 E-value=6.7 Score=26.95 Aligned_cols=37 Identities=8% Similarity=0.096 Sum_probs=30.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
...+++|||.+-..+...+..|+..|+. +..+.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4568999999988888899999998885 888888764
No 191
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=55.32 E-value=11 Score=26.17 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=24.1
Q ss_pred cEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeec
Q 023157 57 KMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATM 96 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 96 (286)
+.+++||+|.+.... ...+..++...+.+.++|+.|...
T Consensus 78 g~l~ldei~~l~~~~-q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 78 GTLVLSHPEHLTREQ-QYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp SCEEEECGGGSCHHH-HHHHHHHHHSSSCSSCEEEEESSC
T ss_pred cEEEEcChHHCCHHH-HHHHHHHHhhcCCCEEEEEECCcC
Confidence 579999999875433 344444445555566666665543
No 192
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=54.77 E-value=8.5 Score=28.93 Aligned_cols=40 Identities=8% Similarity=0.019 Sum_probs=20.9
Q ss_pred CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHhhcc
Q 023157 31 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSR 70 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~ 70 (286)
+..++..+...+...+....-.+...++||+||+|.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~~~~~ 119 (242)
T 3bos_A 80 ERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGH 119 (242)
T ss_dssp TCCEEEEEGGGGGGSCGGGGTTGGGSSEEEEETGGGGTTC
T ss_pred CCeEEEEEHHHHHHHHHHHHHhccCCCEEEEeccccccCC
Confidence 3455555544333222111112233579999999987543
No 193
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=54.73 E-value=9.1 Score=26.56 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=30.1
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
+..++++||.+-..+...+..|+..|+. +..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 3457999999988888999999999985 777777753
No 194
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=54.35 E-value=7.2 Score=29.52 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=17.7
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHH
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIF 80 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~ 80 (286)
.+.++|+|||+|- +.......+..+.
T Consensus 100 ~~~dvV~IDEaQF-f~~~~v~~l~~la 125 (219)
T 3e2i_A 100 TNVDVIGIDEVQF-FDDEIVSIVEKLS 125 (219)
T ss_dssp TTCSEEEECCGGG-SCTHHHHHHHHHH
T ss_pred cCCCEEEEechhc-CCHHHHHHHHHHH
Confidence 4568999999995 4444455565555
No 195
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=53.69 E-value=25 Score=30.82 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=47.8
Q ss_pred cceEEEecchhhHHHHHHHHhcC--------CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----Ccc--CCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSR--------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----LAR--GID 217 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~--Gid 217 (286)
.++||.+|++.-+..+++.++.. ...+..+.++.+... .+..+..+..+|+|+|+. +.. ...
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 48999999999999888877652 345667777765443 344455567899999952 111 234
Q ss_pred CCCCcEEEE
Q 023157 218 VQQVSLVIN 226 (286)
Q Consensus 218 i~~~~~vi~ 226 (286)
+..++++|+
T Consensus 173 ~~~~~~lVi 181 (579)
T 3sqw_A 173 FRFVDYKVL 181 (579)
T ss_dssp CTTCCEEEE
T ss_pred cccCCEEEE
Confidence 566777764
No 196
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=53.15 E-value=18 Score=29.73 Aligned_cols=69 Identities=10% Similarity=0.004 Sum_probs=45.5
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----C--ccCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----L--ARGIDV 218 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~--~~Gidi 218 (286)
.+.+++|.+|++.-+...++.+++. +..+....++..... ......+|+|+|.. + ...+++
T Consensus 94 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ivv~T~~~l~~~~~~~~~~~~ 166 (412)
T 3fht_A 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDP 166 (412)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCSSCG
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-------hhcCCCCEEEECchHHHHHHHhcCCcCh
Confidence 4458999999999999887777652 456666666544221 12445689999952 1 134566
Q ss_pred CCCcEEEE
Q 023157 219 QQVSLVIN 226 (286)
Q Consensus 219 ~~~~~vi~ 226 (286)
..++++|+
T Consensus 167 ~~~~~iVi 174 (412)
T 3fht_A 167 KKIKVFVL 174 (412)
T ss_dssp GGCCEEEE
T ss_pred hhCcEEEE
Confidence 67888875
No 197
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.14 E-value=16 Score=29.46 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=25.3
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
...+|++||+|.+.... ...+..++...+...++++.+.
T Consensus 133 ~~~vliiDE~~~l~~~~-~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 133 PYKIIILDEADSMTADA-QSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp SCEEEEETTGGGSCHHH-HHHHHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECCCccCHHH-HHHHHHHHHhcCCCceEEEEeC
Confidence 45799999999875432 3555666666655565665543
No 198
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=52.47 E-value=27 Score=30.37 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=47.7
Q ss_pred cceEEEecchhhHHHHHHHHhcC--------CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC-----Ccc--CCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSR--------DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL-----LAR--GID 217 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~--Gid 217 (286)
.++||.+|++.-|...++.++.. ...+..+.++.+... .++.+..+..+|+|+|+. +.. ...
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 223 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 223 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcHHHHHHHHhccccc
Confidence 47999999999999988887652 345677777766443 344445567899999962 111 234
Q ss_pred CCCCcEEEE
Q 023157 218 VQQVSLVIN 226 (286)
Q Consensus 218 i~~~~~vi~ 226 (286)
+..++++|+
T Consensus 224 ~~~~~~lVi 232 (563)
T 3i5x_A 224 FRFVDYKVL 232 (563)
T ss_dssp CTTCCEEEE
T ss_pred cccceEEEE
Confidence 556777764
No 199
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=52.46 E-value=24 Score=22.41 Aligned_cols=101 Identities=8% Similarity=0.042 Sum_probs=46.4
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc----CCCcEEEEecCCcc
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS----GSSRVLITTDLLAR 214 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~T~~~~~ 214 (286)
....+...+... +-. +..+.+..++... +.+....+.++...++..+-...++.++. ....+++.|+....
T Consensus 13 ~~~~l~~~l~~~-g~~-v~~~~~~~~~~~~---l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~ 87 (119)
T 2j48_A 13 AATVVCEMLTAA-GFK-VIWLVDGSTALDQ---LDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPV 87 (119)
T ss_dssp HHHHHHHHHHHT-TCE-EEEESCHHHHHHH---HHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCS
T ss_pred HHHHHHHHHHhC-CcE-EEEecCHHHHHHH---HHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCc
Confidence 444555555532 223 3445554444333 33334566666655544333444444432 34556666654322
Q ss_pred CCCCCCCcEEEEccCCCCcchhhhhhccccc
Q 023157 215 GIDVQQVSLVINYDLPTQPENYLHRIGRSGR 245 (286)
Q Consensus 215 Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R 245 (286)
. ..-.....-.+..|.+..++.+++.++.+
T Consensus 88 ~-~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 88 D-PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp S-HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred h-hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 1 11011111234456677777777665543
No 200
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=52.46 E-value=42 Score=24.75 Aligned_cols=73 Identities=12% Similarity=0.137 Sum_probs=45.5
Q ss_pred HHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHH----HHHHHHHHhhcCCCcEEEEecCC
Q 023157 140 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQN----TRDIIMREFRSGSSRVLITTDLL 212 (286)
Q Consensus 140 ~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~r~~~~~~f~~~~~~vlv~T~~~ 212 (286)
+....+..+...-++++|.+.+-.+|..+++.+...++-+.-+|.+.... --.+..+.+.+...+|+-+|-.+
T Consensus 32 l~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~tH~l 108 (201)
T 1vp8_A 32 LRLAVERAKELGIKHLVVASSYGDTAMKALEMAEGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQSHIL 108 (201)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHCTTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEECCCTT
T ss_pred HHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHhcCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEEeccc
Confidence 34444444555667899999999999999998833233344555543211 11345566666778888888653
No 201
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=52.43 E-value=13 Score=31.39 Aligned_cols=86 Identities=13% Similarity=0.288 Sum_probs=42.0
Q ss_pred ceEEEEEcCcchHH--HHHHHh-------CCCcEEEeCcHHHHHHH----hcCCC-----CCC-CccEEEEehhhHhhcc
Q 023157 10 VKVHACVGGTSVRE--DQRILQ-------AGVHVVVGTPGRVFDML----RRQSL-----RPD-YIKMFVLDEADEMLSR 70 (286)
Q Consensus 10 ~~~~~~~g~~~~~~--~~~~~~-------~~~~iii~Tp~~l~~~~----~~~~~-----~~~-~~~~iIiDE~h~~~~~ 70 (286)
.....++|..+..+ -...+. .+..++..+.+.+...+ ..... ... ..+++++||+|.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 45667788555332 222111 14566666665554322 11110 112 4689999999987653
Q ss_pred -ccHHHHHHHHHhC-CcCccEEEEEeec
Q 023157 71 -GFKDQIYDIFQLL-PAKVQVGVFSATM 96 (286)
Q Consensus 71 -~~~~~~~~i~~~~-~~~~~~i~~SAT~ 96 (286)
.....+..++... ....++++ |++.
T Consensus 210 ~~~q~~l~~~l~~l~~~~~~iIi-tt~~ 236 (440)
T 2z4s_A 210 TGVQTELFHTFNELHDSGKQIVI-CSDR 236 (440)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEE-EESS
T ss_pred hHHHHHHHHHHHHHHHCCCeEEE-EECC
Confidence 2233444444332 33344444 4443
No 202
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=51.46 E-value=12 Score=30.59 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=21.9
Q ss_pred ccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 56 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
-.+|||||+|.+.... ...+...+...+....+++.|
T Consensus 120 ~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred eEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 4799999999865433 344555555544444444444
No 203
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=51.39 E-value=24 Score=28.09 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=37.7
Q ss_pred ccCceEEEEEcCcchHHHHHHH----hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEeh
Q 023157 7 YLGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDE 63 (286)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~----~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE 63 (286)
..|+.+..+||+.+..++...+ .+..+|+|+|. +....+++..+++||.=+
T Consensus 50 ~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------va~~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 50 RLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------VAARGLDIPQVDLVVHYR 104 (300)
T ss_dssp TTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS------TTTCSTTCCCCSEEEESS
T ss_pred hCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec------hhhcCccccceeEEEEcC
Confidence 3488999999998877766554 34789999993 334567888888888533
No 204
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=51.28 E-value=22 Score=27.62 Aligned_cols=12 Identities=25% Similarity=0.556 Sum_probs=10.7
Q ss_pred cEEEEehhhHhh
Q 023157 57 KMFVLDEADEML 68 (286)
Q Consensus 57 ~~iIiDE~h~~~ 68 (286)
.+|++||+|.+.
T Consensus 112 ~vl~iDEid~l~ 123 (285)
T 3h4m_A 112 SIIFIDEIDAIA 123 (285)
T ss_dssp EEEEEETTHHHH
T ss_pred eEEEEECHHHhc
Confidence 699999999885
No 205
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=51.06 E-value=51 Score=21.83 Aligned_cols=109 Identities=12% Similarity=0.016 Sum_probs=57.7
Q ss_pred EccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc----CCCcEEE
Q 023157 132 NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS----GSSRVLI 207 (286)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv 207 (286)
.++........+...+....+-.++..+.+..++.. .+......+.++...++..+-...++.++. ....|++
T Consensus 13 ivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~---~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 89 (143)
T 3cnb_A 13 IIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGD---LLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIA 89 (143)
T ss_dssp EECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHH---HHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEE
T ss_pred EEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHH---HHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEE
Confidence 344444455666666665333454555666544443 344445677777766665444555666554 3456666
Q ss_pred EecCCccC-----CCCCCCcEEEEccCCCCcchhhhhhcccccC
Q 023157 208 TTDLLARG-----IDVQQVSLVINYDLPTQPENYLHRIGRSGRF 246 (286)
Q Consensus 208 ~T~~~~~G-----idi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 246 (286)
.|...... +.. .++.+ +..|.+..++.+++.++.+.
T Consensus 90 ~s~~~~~~~~~~~~~~-g~~~~--l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 90 MTGALTDDNVSRIVAL-GAETC--FGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp EESSCCHHHHHHHHHT-TCSEE--EESSCCHHHHHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHhc-CCcEE--EeCCCCHHHHHHHHHHHHHh
Confidence 66532211 111 12222 34567777777777666543
No 206
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.97 E-value=9.1 Score=30.42 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=24.1
Q ss_pred ccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEe
Q 023157 56 IKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
-.+||+||+|.+.... ...+..++...+....+++.|.
T Consensus 108 ~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 108 HKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEES
T ss_pred ceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEeC
Confidence 5799999999865432 3445555565555565665553
No 207
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=50.25 E-value=59 Score=27.79 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=48.4
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCC----CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC--Ccc-CCCCCCCcE
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRD----HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL--LAR-GIDVQQVSL 223 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~--~~~-Gidi~~~~~ 223 (286)
...+++|.+|++.-+...++.+++.+ ..+..++++.+..++ ..+..+|+|+|.- ... ...+.+.++
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~l 228 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGM 228 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEE
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCE
Confidence 33599999999999999988887652 367888888775543 4577899999952 111 133445666
Q ss_pred EEE
Q 023157 224 VIN 226 (286)
Q Consensus 224 vi~ 226 (286)
||+
T Consensus 229 iIi 231 (510)
T 2oca_A 229 MMN 231 (510)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 208
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=50.11 E-value=20 Score=27.03 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=11.0
Q ss_pred CccEEEEehhhHh
Q 023157 55 YIKMFVLDEADEM 67 (286)
Q Consensus 55 ~~~~iIiDE~h~~ 67 (286)
.+++|+|||++.+
T Consensus 101 ~~dvViIDEaQF~ 113 (214)
T 2j9r_A 101 EMDVIAIDEVQFF 113 (214)
T ss_dssp SCCEEEECCGGGS
T ss_pred CCCEEEEECcccC
Confidence 4789999999964
No 209
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=49.62 E-value=16 Score=29.83 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=17.8
Q ss_pred ccEEEEehhhHhhccc-cHHHHHHHHHhC
Q 023157 56 IKMFVLDEADEMLSRG-FKDQIYDIFQLL 83 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~-~~~~~~~i~~~~ 83 (286)
..+|++||+|.+.... ....+..++...
T Consensus 131 ~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp EEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred eEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 3489999999886542 234455555443
No 210
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=49.14 E-value=13 Score=32.03 Aligned_cols=75 Identities=13% Similarity=0.061 Sum_probs=53.8
Q ss_pred HHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCC
Q 023157 141 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQ 220 (286)
Q Consensus 141 ~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 220 (286)
..+...++. .+.++++.+.+...++.+.+.|.+.++.+...... . .+. .-.+.|+...++.|+.+|+
T Consensus 372 ~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~~i~~~~~~~~-~---------~~~--~g~v~i~~g~L~~GF~~p~ 438 (483)
T 3hjh_A 372 DALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL-D---------EAS--DRGRYLMIGAAEHGFVDTV 438 (483)
T ss_dssp HHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGGTCCCEECSCG-G---------GCC--TTCEEEEESCCCSCEEETT
T ss_pred HHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHcCCCceecCch-h---------hcC--CCcEEEEEcccccCcccCC
Confidence 445555532 24689999999999999999999988765543221 1 112 3357778888999999999
Q ss_pred CcEEEEcc
Q 023157 221 VSLVINYD 228 (286)
Q Consensus 221 ~~~vi~~~ 228 (286)
...+++..
T Consensus 439 ~klaVITE 446 (483)
T 3hjh_A 439 RNLALICE 446 (483)
T ss_dssp TTEEEEEH
T ss_pred CCEEEEEc
Confidence 88888754
No 211
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=49.09 E-value=17 Score=29.97 Aligned_cols=13 Identities=46% Similarity=0.654 Sum_probs=11.1
Q ss_pred cEEEEehhhHhhc
Q 023157 57 KMFVLDEADEMLS 69 (286)
Q Consensus 57 ~~iIiDE~h~~~~ 69 (286)
-+||+||+|.+..
T Consensus 140 ~llvlDe~~~l~~ 152 (412)
T 1w5s_A 140 LLVILDEFQSMLS 152 (412)
T ss_dssp EEEEEESTHHHHS
T ss_pred EEEEEeCHHHHhh
Confidence 4899999998865
No 212
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=48.94 E-value=21 Score=25.41 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=20.6
Q ss_pred cEEEEehhhHhhc-------cccHHHHHHHHHhCCcCccEEEEEe
Q 023157 57 KMFVLDEADEMLS-------RGFKDQIYDIFQLLPAKVQVGVFSA 94 (286)
Q Consensus 57 ~~iIiDE~h~~~~-------~~~~~~~~~i~~~~~~~~~~i~~SA 94 (286)
.++++||+|.+.. ......+..+... .+..+++.|.
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~ 159 (195)
T 1jbk_A 117 VILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 159 (195)
T ss_dssp EEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred eEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCC
Confidence 5899999998752 2334455544432 2344444443
No 213
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=48.77 E-value=30 Score=31.19 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=49.9
Q ss_pred cCcceEEEecchhhHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccCCC-CCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARGID-VQQV 221 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~Gid-i~~~ 221 (286)
.+.++++.+|++.-+...++.++. .|..+..++|+....++ ..+..+|+|+|+ .+..+.. +.++
T Consensus 67 ~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~ 139 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNRASWIKAV 139 (702)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTTCSGGGGC
T ss_pred hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcChhHHhhc
Confidence 357999999999999999888743 36789999998764432 234789999995 2223322 5677
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
++||+
T Consensus 140 ~~vIi 144 (702)
T 2p6r_A 140 SCLVV 144 (702)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88875
No 214
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=47.11 E-value=15 Score=26.65 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=25.7
Q ss_pred cCceEEEEEcCcchHHHHHHH----hCCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEe
Q 023157 8 LGVKVHACVGGTSVREDQRIL----QAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLD 62 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~~~~----~~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiD 62 (286)
.|+.+..++|+.+..++...+ .+..+|+|+|. . ....+++..+++||.=
T Consensus 69 ~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~-~~~Gldi~~~~~VI~~ 121 (185)
T 2jgn_A 69 EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----V-AARGLDISNVKHVINF 121 (185)
T ss_dssp TTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCSBSEEEES
T ss_pred cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----h-hhcCCCcccCCEEEEe
Confidence 478899999988765544433 34788999993 2 2235667778887763
No 215
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=47.07 E-value=14 Score=30.19 Aligned_cols=37 Identities=27% Similarity=0.415 Sum_probs=21.6
Q ss_pred EEEEehhhHhhccccHHH-HHHHHHhCCcCccEEEEEee
Q 023157 58 MFVLDEADEMLSRGFKDQ-IYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 58 ~iIiDE~h~~~~~~~~~~-~~~i~~~~~~~~~~i~~SAT 95 (286)
+||+||+|.+........ +..+.... .+..+|+.|..
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 999999998865432334 44454443 34445544443
No 216
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=46.79 E-value=27 Score=29.66 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=23.1
Q ss_pred CCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 53 PDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 53 ~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
+..+++|||||+|.+. ...+..+...++...+++++.
T Consensus 126 ~~~~~~iiiDE~~~~~----~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 126 LAKCRVLICDEVSMYD----RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp CSSCSEEEESCGGGCC----HHHHHHHHHHSCTTCEEEEEE
T ss_pred ccCCCEEEEECchhCC----HHHHHHHHHhccCCCEEEEEC
Confidence 3457899999999653 234445555555455555554
No 217
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=46.51 E-value=7.2 Score=27.88 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=10.7
Q ss_pred cEEEEehhhHhh
Q 023157 57 KMFVLDEADEML 68 (286)
Q Consensus 57 ~~iIiDE~h~~~ 68 (286)
.++++||+|.+.
T Consensus 117 ~vl~iDe~~~l~ 128 (187)
T 2p65_A 117 VVMFIDEIHTVV 128 (187)
T ss_dssp EEEEETTGGGGS
T ss_pred eEEEEeCHHHhc
Confidence 699999999886
No 218
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=45.22 E-value=36 Score=32.35 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=39.4
Q ss_pred cCcceEEEecchhhHHHHHHHHhcC--CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 210 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 210 (286)
.+.+++|.+|++.-+...++.+++. +..+..++|+.+ .++..+|+|+|+
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~-----------~~~~~~IlV~Tp 131 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ-----------INPDANCLIMTT 131 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE-----------ECTTSSEEEEEH
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc-----------cCCCCCEEEECH
Confidence 4568999999999999999999885 568999999875 335677888884
No 219
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=44.96 E-value=1e+02 Score=27.63 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=50.8
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC--CCeeEEec--------------------CCCC-----HHHH
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATH--------------------GDMD-----QNTR 191 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~--~~~~~~~~--------------------~~~~-----~~~r 191 (286)
|.-.+..++... +.+++|.+++...|..++..|+.. +..+..+- ...+ ...|
T Consensus 41 kt~~~a~~~~~~-~~~~lvv~~~~~~A~ql~~el~~~~~~~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~~~i~~~R 119 (664)
T 1c4o_A 41 KTVTMAKVIEAL-GRPALVLAPNKILAAQLAAEFRELFPENAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLR 119 (664)
T ss_dssp HHHHHHHHHHHH-TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCEEEEecCHHHHHHHHHHHHHHCCCCeEEEcCchhhccCcccccchhhhhhhhhcccCHHHHHHH
Confidence 555555555543 358999999999999999999875 22233222 2332 4567
Q ss_pred HHHHHHhhcCCCcEEEEecCCccCC
Q 023157 192 DIIMREFRSGSSRVLITTDLLARGI 216 (286)
Q Consensus 192 ~~~~~~f~~~~~~vlv~T~~~~~Gi 216 (286)
..++..+.+++..|+|+|-.+-.|+
T Consensus 120 ~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 120 HSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp HHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred HHHHHHHHhCCCeEEEecHHHHhcC
Confidence 8888888777767888875433554
No 220
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=44.69 E-value=39 Score=27.17 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=26.0
Q ss_pred CCccEEEEehhhH-hhccccHHHHHHHHHhCCcCccEEEEEeecC
Q 023157 54 DYIKMFVLDEADE-MLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 54 ~~~~~iIiDE~h~-~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
..-++||+||+|. +... ..+.+...+...++...+++.+.++.
T Consensus 75 ~~~kvvii~~~~~kl~~~-~~~aLl~~le~p~~~~~~il~~~~~~ 118 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAA-INEQLLTLTGLLHDDLLLIVRGNKLS 118 (343)
T ss_dssp CSCEEEEEECCSSCCCTT-HHHHHHHHHTTCBTTEEEEEEESCCC
T ss_pred cCCeEEEEECCCCCCChH-HHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 4458999999997 5433 34556666665554555555554443
No 221
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=44.49 E-value=1.7e+02 Score=25.87 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=27.6
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEec
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATH 183 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~ 183 (286)
+...+.|.+++...+..+...|.+.|+.+....
T Consensus 346 ~~~diaVL~r~~~~~~~l~~~l~~~~Ip~~~~~ 378 (647)
T 3lfu_A 346 ALAECAILYRSNAQSRVLEEALLQASMPYRIYG 378 (647)
T ss_dssp CGGGEEEEESSGGGHHHHHHHHHHTTCCEEESS
T ss_pred CccCEEEEEeCchhHHHHHHHHHHCCCCEEEeC
Confidence 346788999999999999999999998876554
No 222
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=44.22 E-value=12 Score=29.52 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=12.4
Q ss_pred CCccEEEEehhhHhhc
Q 023157 54 DYIKMFVLDEADEMLS 69 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~ 69 (286)
....++|+||+|.+..
T Consensus 101 ~~~~vliiDe~~~l~~ 116 (319)
T 2chq_A 101 APFKIIFLDEADALTA 116 (319)
T ss_dssp CCCEEEEEETGGGSCH
T ss_pred CCceEEEEeCCCcCCH
Confidence 3457999999998643
No 223
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=44.08 E-value=17 Score=25.59 Aligned_cols=35 Identities=3% Similarity=0.228 Sum_probs=29.1
Q ss_pred CcceEEEecch---------hhHHHHHHHHhcCCCeeEEecCCC
Q 023157 152 ITQSVIFVNTR---------RKVDWLTDKMRSRDHTVSATHGDM 186 (286)
Q Consensus 152 ~~~~ivf~~~~---------~~~~~l~~~l~~~~~~~~~~~~~~ 186 (286)
..+++|||.+- ..+..++..|...|+.+..+.|++
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 46899999886 357788999999999988888885
No 224
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=43.84 E-value=42 Score=26.70 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=30.2
Q ss_pred eEEEEEcCcchHHHH-------HHH-hCCCcEEEeCcHHHHHHHhcCCC---------CCCCccEEEEehhhH
Q 023157 11 KVHACVGGTSVREDQ-------RIL-QAGVHVVVGTPGRVFDMLRRQSL---------RPDYIKMFVLDEADE 66 (286)
Q Consensus 11 ~~~~~~g~~~~~~~~-------~~~-~~~~~iii~Tp~~l~~~~~~~~~---------~~~~~~~iIiDE~h~ 66 (286)
....++|..+..+.. ... ..+..+++.+...+...+..... .+...++||+||++.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~ 225 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGA 225 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence 566778865543321 122 34566765555555554433110 112358999999964
No 225
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=43.64 E-value=92 Score=23.97 Aligned_cols=60 Identities=12% Similarity=0.105 Sum_probs=43.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHH-HHHHHhh--cCCCcEEEEec
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRD-IIMREFR--SGSSRVLITTD 210 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~-~~~~~f~--~~~~~vlv~T~ 210 (286)
.+.++++.-.+.+.++.+++.++..+..+..+..+++..+.. +..+... -|.+++||...
T Consensus 30 ~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA 92 (254)
T 4fn4_A 30 NDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNNA 92 (254)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 345777777778888999999998888888889988755443 3333332 38899999865
No 226
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=43.50 E-value=19 Score=29.97 Aligned_cols=14 Identities=7% Similarity=0.249 Sum_probs=11.6
Q ss_pred ccEEEEehhhHhhc
Q 023157 56 IKMFVLDEADEMLS 69 (286)
Q Consensus 56 ~~~iIiDE~h~~~~ 69 (286)
++++|+||+|.+.+
T Consensus 274 ~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 274 FAMIYIEDCAFIPN 287 (385)
T ss_dssp CSEEEEESGGGSTT
T ss_pred CCEEEechhhhcCC
Confidence 57999999997654
No 227
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=42.97 E-value=11 Score=26.99 Aligned_cols=43 Identities=14% Similarity=-0.031 Sum_probs=22.4
Q ss_pred CccEEEEehhhHhh-ccccHHHHHHHHHhCC-cCccEEEEEeecC
Q 023157 55 YIKMFVLDEADEML-SRGFKDQIYDIFQLLP-AKVQVGVFSATMP 97 (286)
Q Consensus 55 ~~~~iIiDE~h~~~-~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~ 97 (286)
+.+++|+||.+... +......+..++.... ....+++.|..++
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 45899999998432 2222344445544432 2344555444443
No 228
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=42.90 E-value=26 Score=28.02 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=20.9
Q ss_pred cEEEEehhhHhhc------cccHHHHHHHHHhCCcCccEEEEEee
Q 023157 57 KMFVLDEADEMLS------RGFKDQIYDIFQLLPAKVQVGVFSAT 95 (286)
Q Consensus 57 ~~iIiDE~h~~~~------~~~~~~~~~i~~~~~~~~~~i~~SAT 95 (286)
-+||+||+|.+.. ..+...+..+.... .+..++ +|++
T Consensus 130 ~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~i-l~g~ 172 (350)
T 2qen_A 130 FIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PNLKII-LTGS 172 (350)
T ss_dssp EEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TTEEEE-EEES
T ss_pred EEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CCeEEE-EECC
Confidence 4899999998765 12334444544443 244444 4444
No 229
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=42.84 E-value=31 Score=26.35 Aligned_cols=25 Identities=8% Similarity=0.054 Sum_probs=16.6
Q ss_pred CccEEEEehhhHhhccccHHHHHHHHHh
Q 023157 55 YIKMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 55 ~~~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
.+++|+|||++-+.+ ...+..++..
T Consensus 90 ~~dvViIDEaQF~~~---v~el~~~l~~ 114 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD---IVEFCEAMAN 114 (234)
T ss_dssp TCSEEEESSGGGCTT---HHHHHHHHHH
T ss_pred cCCEEEEEchhhhhh---HHHHHHHHHh
Confidence 468999999996642 4444455544
No 230
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=42.77 E-value=1.4e+02 Score=25.53 Aligned_cols=100 Identities=12% Similarity=0.048 Sum_probs=60.7
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC-CCeeEEecC-------CC-C----HHHHHHHHHHhhcCCCcE
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHG-------DM-D----QNTRDIIMREFRSGSSRV 205 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~-~~~~~~~~~-------~~-~----~~~r~~~~~~f~~~~~~v 205 (286)
+.-.+..+++.. +.+++|.+++...|..++..|+.. +..+..+=+ .. + ...|..++..+..++..|
T Consensus 27 ka~~~a~l~~~~-~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~~l~~L~~~~~~i 105 (483)
T 3hjh_A 27 CATLVAEIAERH-AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGV 105 (483)
T ss_dssp HHHHHHHHHHHS-SSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSSE
T ss_pred HHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHHHHHHHHhCCCCE
Confidence 555666666543 468999999999999999999864 223332221 11 1 235788888888888889
Q ss_pred EEEecCCccCCCCC-----CCcEEEEccCCCCcchhhhh
Q 023157 206 LITTDLLARGIDVQ-----QVSLVINYDLPTQPENYLHR 239 (286)
Q Consensus 206 lv~T~~~~~Gidi~-----~~~~vi~~~~~~s~~~~~Q~ 239 (286)
+|+|-.+-.+.=.| .....+-.|-..+...+.++
T Consensus 106 vv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~ 144 (483)
T 3hjh_A 106 LIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQ 144 (483)
T ss_dssp EEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHH
T ss_pred EEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHH
Confidence 98884333332222 12344445544444444443
No 231
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=42.74 E-value=19 Score=26.48 Aligned_cols=13 Identities=15% Similarity=0.266 Sum_probs=11.0
Q ss_pred CccEEEEehhhHh
Q 023157 55 YIKMFVLDEADEM 67 (286)
Q Consensus 55 ~~~~iIiDE~h~~ 67 (286)
++++|+|||++.+
T Consensus 81 ~~dvViIDEaqfl 93 (191)
T 1xx6_A 81 DTEVIAIDEVQFF 93 (191)
T ss_dssp TCSEEEECSGGGS
T ss_pred cCCEEEEECCCCC
Confidence 3689999999964
No 232
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=42.60 E-value=21 Score=25.79 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=26.5
Q ss_pred cEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 57 KMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
.++++||...-.+......+..++.......+++.+|
T Consensus 88 ~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivit 124 (173)
T 3kta_B 88 PFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVIT 124 (173)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEE
Confidence 6999999998777765666666666655556666655
No 233
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=42.55 E-value=22 Score=29.35 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=18.1
Q ss_pred ccEEEEehhhHhhcc---ccHHHHHHHHHhC
Q 023157 56 IKMFVLDEADEMLSR---GFKDQIYDIFQLL 83 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~---~~~~~~~~i~~~~ 83 (286)
-.++|+||+|.+... .....+..+++..
T Consensus 263 ~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~ 293 (392)
T 4ag6_A 263 RTVLVVDEAWMLVDPQTPQAIAFLRDTSKRI 293 (392)
T ss_dssp TCEEEETTGGGGCCTTCTHHHHHHHHHHHHG
T ss_pred cEEEEEecHHHHhCcCchHHHHHHHHHHHHh
Confidence 368999999998752 2334455555443
No 234
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=42.36 E-value=22 Score=30.19 Aligned_cols=67 Identities=10% Similarity=0.015 Sum_probs=43.2
Q ss_pred cceEEEecchhhHHHHHHHHhcC-----CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCC------c-cCCCCCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSR-----DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLL------A-RGIDVQQ 220 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~------~-~Gidi~~ 220 (286)
.++||.+|++.-+...++.++.. +..+....++..... ......+|+|+|... . ..+++..
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-------GQKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT-------TCCCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc-------cccCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 38999999999998887666542 445555555433211 123356899999621 1 3567778
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
+.++|+
T Consensus 236 ~~~iVi 241 (479)
T 3fmp_B 236 IKVFVL 241 (479)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888875
No 235
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=42.20 E-value=76 Score=21.33 Aligned_cols=110 Identities=11% Similarity=0.119 Sum_probs=58.0
Q ss_pred EEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc--CCCcEEE
Q 023157 130 YVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS--GSSRVLI 207 (286)
Q Consensus 130 ~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv 207 (286)
...+++.......+...+........+..+.+..++. +.+.+....+.++.-.++..+-...++.+++ ....|++
T Consensus 23 iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al---~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 99 (150)
T 4e7p_A 23 VLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAI---QLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVV 99 (150)
T ss_dssp EEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHH---HHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEE
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHH---HHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 3445555545666777776544334555666654443 4455566777877777665555555555543 2455666
Q ss_pred EecCCcc-----CCCCCCCcEEEEccCCCCcchhhhhhccccc
Q 023157 208 TTDLLAR-----GIDVQQVSLVINYDLPTQPENYLHRIGRSGR 245 (286)
Q Consensus 208 ~T~~~~~-----Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R 245 (286)
.|..... .+.. .++. .+..|.+..++.+++.++.+
T Consensus 100 ls~~~~~~~~~~~~~~-g~~~--~l~Kp~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 100 VTTFKRAGYFERAVKA-GVDA--YVLKERSIADLMQTLHTVLE 139 (150)
T ss_dssp EESCCCHHHHHHHHHT-TCSE--EEETTSCHHHHHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHC-CCcE--EEecCCCHHHHHHHHHHHHc
Confidence 6543221 1111 1122 22345666666666666544
No 236
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=42.06 E-value=31 Score=32.80 Aligned_cols=65 Identities=17% Similarity=0.172 Sum_probs=46.1
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccC-CCCCCCcEE
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARG-IDVQQVSLV 224 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-idi~~~~~v 224 (286)
.+.++++.+|++.-+...++.++.....+..++|+.+. ..+.+|+|+|. .+..+ ..+.++++|
T Consensus 128 ~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~-----------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lV 196 (1010)
T 2xgj_A 128 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWV 196 (1010)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHHSCEEEECSSCEE-----------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEE
T ss_pred cCCeEEEECChHHHHHHHHHHHHHHhCCEEEEeCCCcc-----------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEE
Confidence 45789999999999988888887654478888988753 23578999995 22223 344566666
Q ss_pred EE
Q 023157 225 IN 226 (286)
Q Consensus 225 i~ 226 (286)
|+
T Consensus 197 Vi 198 (1010)
T 2xgj_A 197 IF 198 (1010)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 237
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=41.68 E-value=23 Score=27.67 Aligned_cols=42 Identities=12% Similarity=0.030 Sum_probs=34.0
Q ss_pred HHhhccCcceEEEecchhhHHHHHHHHhcCCC-eeEEecCCCC
Q 023157 146 LYETLAITQSVIFVNTRRKVDWLTDKMRSRDH-TVSATHGDMD 187 (286)
Q Consensus 146 ~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 187 (286)
.+...++.++++||.+-..+...+..|...|+ ++..+.||+.
T Consensus 175 ~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 175 NLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGIL 217 (265)
T ss_dssp HTGGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred hhhhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 34445667899999998889999999999998 5888888864
No 238
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=41.41 E-value=95 Score=22.19 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=34.1
Q ss_pred hHHHHHHHHhcCCCeeEEec--CCCCHHHHHHHHHH-hhcCCCcEEEEecCCccCCC
Q 023157 164 KVDWLTDKMRSRDHTVSATH--GDMDQNTRDIIMRE-FRSGSSRVLITTDLLARGID 217 (286)
Q Consensus 164 ~~~~l~~~l~~~~~~~~~~~--~~~~~~~r~~~~~~-f~~~~~~vlv~T~~~~~Gid 217 (286)
....+++.|.+.|+.+..+. ++ ..+.-.+.+.. ...++.+++|+|.-.+.|-|
T Consensus 41 ng~~L~~~L~~~G~~v~~~~iV~D-d~~~i~~al~~~~a~~~~DlVittGG~g~~~~ 96 (178)
T 3iwt_A 41 SGDIIKQLLIENGHKIIGYSLVPD-DKIKILKAFTDALSIDEVDVIISTGGTGYSPT 96 (178)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEECS-CHHHHHHHHHHHHTCTTCCEEEEESCCSSSTT
T ss_pred hHHHHHHHHHHCCCEEEEEEEeCC-CHHHHHHHHHHHHhcCCCCEEEecCCcccCCC
Confidence 45678999999998765332 23 22333333333 34677899999998777754
No 239
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=40.57 E-value=30 Score=26.99 Aligned_cols=37 Identities=8% Similarity=-0.005 Sum_probs=31.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCC-eeEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDH-TVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 187 (286)
...++++||.+-..+...+..|...|+ ++..+.|++.
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~ 266 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWS 266 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHH
Confidence 456899999998888889999999998 5888889875
No 240
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=40.13 E-value=15 Score=27.17 Aligned_cols=13 Identities=15% Similarity=0.212 Sum_probs=11.2
Q ss_pred CccEEEEehhhHh
Q 023157 55 YIKMFVLDEADEM 67 (286)
Q Consensus 55 ~~~~iIiDE~h~~ 67 (286)
++++|+|||+|-+
T Consensus 91 ~~DvIlIDEaQFf 103 (195)
T 1w4r_A 91 GVAVIGIDEGQFF 103 (195)
T ss_dssp TCSEEEESSGGGC
T ss_pred CCCEEEEEchhhh
Confidence 4689999999966
No 241
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=39.20 E-value=98 Score=22.12 Aligned_cols=48 Identities=10% Similarity=0.060 Sum_probs=37.3
Q ss_pred CcceEEEecc--------------hhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc
Q 023157 152 ITQSVIFVNT--------------RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 200 (286)
Q Consensus 152 ~~~~ivf~~~--------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 200 (286)
.+.+|||.+. ...++.+.+.|+..|+.+. ++..++.++-.+.++.|.+
T Consensus 33 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 33 RGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVH-VLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEE-EEESCCHHHHHHHHHHHHT
T ss_pred ceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHhhh
Confidence 4567777654 2378899999999998874 5677888888888888865
No 242
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=37.56 E-value=89 Score=24.38 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=32.0
Q ss_pred chhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc
Q 023157 161 TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 200 (286)
Q Consensus 161 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 200 (286)
+...++.+.+.|+..|+.|. ++.+++.++-.+.++.|.+
T Consensus 47 t~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 47 THLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHH
Confidence 34678999999999999865 5667888888899998864
No 243
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=37.46 E-value=42 Score=26.78 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=22.8
Q ss_pred cEEEEehhhHhhc---cccHHHHHHHHHhCCcCccEEEEEeec
Q 023157 57 KMFVLDEADEMLS---RGFKDQIYDIFQLLPAKVQVGVFSATM 96 (286)
Q Consensus 57 ~~iIiDE~h~~~~---~~~~~~~~~i~~~~~~~~~~i~~SAT~ 96 (286)
-+||+||+|.+.. ..+...+..+....+ +.. +.+|++.
T Consensus 139 ~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~i~~g~~ 179 (357)
T 2fna_A 139 VIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIK-FIMSGSE 179 (357)
T ss_dssp EEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEE-EEEEESS
T ss_pred eEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeE-EEEEcCc
Confidence 4899999998764 345556666655432 343 4444443
No 244
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=37.21 E-value=25 Score=28.50 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.0
Q ss_pred ccEEEEehhhHhhcc
Q 023157 56 IKMFVLDEADEMLSR 70 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~ 70 (286)
-.+||+||+|.+...
T Consensus 129 ~~vlilDE~~~l~~~ 143 (386)
T 2qby_A 129 QVVIVLDEIDAFVKK 143 (386)
T ss_dssp CEEEEEETHHHHHHS
T ss_pred eEEEEEcChhhhhcc
Confidence 358999999988743
No 245
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=37.14 E-value=1e+02 Score=22.25 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=37.2
Q ss_pred cceEEEecc-----------hhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc
Q 023157 153 TQSVIFVNT-----------RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 200 (286)
Q Consensus 153 ~~~ivf~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 200 (286)
+.+||+.+. ...++.+++.|+..|+.+. ++.+++..+-.+.++.|..
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 456777665 4789999999999999876 5667888888889988853
No 246
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=36.74 E-value=11 Score=30.96 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=10.2
Q ss_pred ccEEEEehhhHh
Q 023157 56 IKMFVLDEADEM 67 (286)
Q Consensus 56 ~~~iIiDE~h~~ 67 (286)
..+||+||+|.+
T Consensus 126 ~~vlilDE~~~l 137 (389)
T 1fnn_A 126 YMFLVLDDAFNL 137 (389)
T ss_dssp CEEEEEETGGGS
T ss_pred eEEEEEECcccc
Confidence 358999999987
No 247
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=36.24 E-value=86 Score=20.20 Aligned_cols=44 Identities=7% Similarity=0.037 Sum_probs=31.1
Q ss_pred cCcceEEEec------chhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHH
Q 023157 151 AITQSVIFVN------TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 194 (286)
Q Consensus 151 ~~~~~ivf~~------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~ 194 (286)
..++++||.. ....+..+.+.|.+.++....+.=...++.+...
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l 65 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGL 65 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHH
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHH
Confidence 4578999998 4889999999999988776655433344443333
No 248
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=36.20 E-value=64 Score=29.02 Aligned_cols=66 Identities=9% Similarity=-0.041 Sum_probs=46.5
Q ss_pred CcceEEEecchhhHHHHHHHHhcC-CCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC---CccCCCCCCCcEEEEc
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSR-DHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL---LARGIDVQQVSLVINY 227 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~---~~~Gidi~~~~~vi~~ 227 (286)
+.+++|.++++..|..+++.+.+. +..+....++.. ..+..+|+|+|+. -...++..+++++|+=
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-----------~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlD 325 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-----------ITTGAPVTYSTYGKFLADGGCSGGAYDIIICD 325 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-----------ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEET
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-----------ccCCCCEEEECcHHHHhCCCcccCcccEEEEc
Confidence 458999999999999998877543 555666666643 4567899999962 2234666678888763
Q ss_pred c
Q 023157 228 D 228 (286)
Q Consensus 228 ~ 228 (286)
.
T Consensus 326 E 326 (666)
T 3o8b_A 326 E 326 (666)
T ss_dssp T
T ss_pred c
Confidence 3
No 249
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=36.06 E-value=21 Score=24.00 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=60.3
Q ss_pred EccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC
Q 023157 132 NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 211 (286)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 211 (286)
-+++.......+...++... ..++-.+.+-.+|. +.+++..+...++.-.||..+=.+..+..++....|++.|..
T Consensus 13 iVdD~~~~~~~l~~~L~~~G-~~v~~~a~~g~eAl---~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lTa~ 88 (123)
T 2lpm_A 13 VVEDESMIAMLIEDTLCELG-HEVAATASRMQEAL---DIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATGY 88 (123)
T ss_dssp EESSSTTTSHHHHHHHHHHC-CCCCBCSCCHHHHH---HHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBCTT
T ss_pred EEeCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHH---HHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEecC
Confidence 34444445556666665432 23322234444443 344555677777776676655556666666556778888865
Q ss_pred CccCCCCCCCcEEEEccCCCCcchhhhhhccccc
Q 023157 212 LARGIDVQQVSLVINYDLPTQPENYLHRIGRSGR 245 (286)
Q Consensus 212 ~~~Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R 245 (286)
.+..... .....-.+.-|.+..++.+++.|+.|
T Consensus 89 ~~~~~~~-~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 89 GSKGLDT-RYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp CTTSCCS-SSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred ccHHHHH-hCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 4443322 11111134567788888777777655
No 250
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=35.87 E-value=56 Score=28.07 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=27.5
Q ss_pred cEEEEehhhHhhccc----------cHHHHHHHHHhCCcCccEEEEEeecCh
Q 023157 57 KMFVLDEADEMLSRG----------FKDQIYDIFQLLPAKVQVGVFSATMPP 98 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~----------~~~~~~~i~~~~~~~~~~i~~SAT~~~ 98 (286)
.+|++||+|.+.... ....+...+........++++.||-.+
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 589999999876421 123444555555556677888888665
No 251
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=35.43 E-value=1e+02 Score=26.96 Aligned_cols=48 Identities=8% Similarity=0.025 Sum_probs=26.1
Q ss_pred cCcceEEEecchhhHHHHH-HHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec
Q 023157 151 AITQSVIFVNTRRKVDWLT-DKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD 210 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 210 (286)
...+++|.++++.-+...+ +.++..+..+..++++. ..+..+|+|+|.
T Consensus 234 ~~~~vlil~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~------------~~~~~~I~v~T~ 282 (590)
T 3h1t_A 234 RKPRILFLADRNVLVDDPKDKTFTPFGDARHKIEGGK------------VVKSREIYFAIY 282 (590)
T ss_dssp SCCCEEEEEC-----------CCTTTCSSEEECCC--------------CCSSCSEEEEEG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhcchhhhhhhccC------------CCCCCcEEEEEh
Confidence 5678999999988888888 77777766666655432 235678999995
No 252
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=35.21 E-value=52 Score=24.97 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=7.5
Q ss_pred cEEEEehhhHhh
Q 023157 57 KMFVLDEADEML 68 (286)
Q Consensus 57 ~~iIiDE~h~~~ 68 (286)
.+|++||+|.+.
T Consensus 100 ~vl~iDeid~l~ 111 (262)
T 2qz4_A 100 CIVYIDEIDAVG 111 (262)
T ss_dssp EEEEEECC----
T ss_pred eEEEEeCcchhh
Confidence 689999999874
No 253
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=34.99 E-value=51 Score=26.28 Aligned_cols=13 Identities=15% Similarity=0.503 Sum_probs=11.1
Q ss_pred cEEEEehhhHhhc
Q 023157 57 KMFVLDEADEMLS 69 (286)
Q Consensus 57 ~~iIiDE~h~~~~ 69 (286)
.+|++||+|.+..
T Consensus 112 ~vl~iDEid~l~~ 124 (322)
T 3eie_A 112 SIIFIDQVDALTG 124 (322)
T ss_dssp EEEEEECGGGGSC
T ss_pred eEEEechhhhhhc
Confidence 6999999998754
No 254
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=34.97 E-value=56 Score=30.16 Aligned_cols=33 Identities=18% Similarity=0.151 Sum_probs=22.4
Q ss_pred CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHh
Q 023157 30 AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 67 (286)
Q Consensus 30 ~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~ 67 (286)
+..+|+++|...+. +..+. ..+++|||||+...
T Consensus 497 ~~a~VI~~T~~~~~----~~~L~-~~fd~viIDEA~q~ 529 (802)
T 2xzl_A 497 NKADVVCCTCVGAG----DKRLD-TKFRTVLIDESTQA 529 (802)
T ss_dssp HTCSEEEEETTGGG----CTTCC-SCCSEEEETTGGGS
T ss_pred ccCCEEEechhhcC----hHHHh-ccCCEEEEECcccc
Confidence 36789999965432 22222 26899999999854
No 255
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=34.25 E-value=54 Score=25.52 Aligned_cols=36 Identities=8% Similarity=0.024 Sum_probs=29.7
Q ss_pred cCcceEEEecchhhHHHHHHHHh-cCCC-eeEEecCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMR-SRDH-TVSATHGDM 186 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~-~~~~-~~~~~~~~~ 186 (286)
...++++||.+-..+...+..|+ ..|+ ++..+.|++
T Consensus 232 ~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 269 (285)
T 1uar_A 232 KDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSW 269 (285)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchH
Confidence 45689999999888888889998 8888 588888875
No 256
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=34.19 E-value=31 Score=22.82 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=27.0
Q ss_pred ceEEEecchhhHHHHHHHHhcC------C-CeeEEecCCCC
Q 023157 154 QSVIFVNTRRKVDWLTDKMRSR------D-HTVSATHGDMD 187 (286)
Q Consensus 154 ~~ivf~~~~~~~~~l~~~l~~~------~-~~~~~~~~~~~ 187 (286)
++++||.+-..+...+..|... | .++..+.|++.
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHH
Confidence 8999999988888888888877 3 36778888764
No 257
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=33.89 E-value=39 Score=29.03 Aligned_cols=37 Identities=14% Similarity=0.263 Sum_probs=24.1
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
..+.+||+|||..+ +.........+++.+ ..|+|..+
T Consensus 413 ~~~rlvvlDEA~km-D~~~~~~~~~l~~~l--glQliiat 449 (483)
T 3euj_A 413 LPCRLLFLDQAARL-DAMSINTLFELCERL--DMQLLIAA 449 (483)
T ss_dssp CCCCEEEESSGGGS-CHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred CceeEEEEeccccC-CHHHHHHHHHHHHHc--CCEEEEEC
Confidence 46899999999443 444455566666666 47777433
No 258
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=33.80 E-value=54 Score=29.47 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=25.0
Q ss_pred CCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEEeecC
Q 023157 54 DYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 54 ~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
...+++|||||=.+ -.+.+..++..+ ..++||.|..
T Consensus 254 ~~~dlliVDEAAaI----p~pll~~ll~~~----~~v~~~tTv~ 289 (671)
T 2zpa_A 254 EQADWLVVDEAAAI----PAPLLHQLVSRF----PRTLLTTTVQ 289 (671)
T ss_dssp CCCSEEEEETGGGS----CHHHHHHHHTTS----SEEEEEEEBS
T ss_pred ccCCEEEEEchhcC----CHHHHHHHHhhC----CeEEEEecCC
Confidence 34799999999976 345566666533 3688888864
No 259
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=33.75 E-value=1e+02 Score=20.32 Aligned_cols=76 Identities=12% Similarity=-0.013 Sum_probs=37.9
Q ss_pred EccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcC--CCcEEEEe
Q 023157 132 NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG--SSRVLITT 209 (286)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~T 209 (286)
.+++.......+...+....+-.++-.+.+..++. +.+......+.++.-.++..+-...++.++.. ...|++.|
T Consensus 14 ivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al---~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 90 (143)
T 2qv0_A 14 IVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVL---KFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFIT 90 (143)
T ss_dssp EECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHH---HHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEEE
T ss_pred EEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHH---HHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEEEe
Confidence 34444435555666665543333332444444333 34444556777777666554445555555532 23355555
Q ss_pred c
Q 023157 210 D 210 (286)
Q Consensus 210 ~ 210 (286)
.
T Consensus 91 ~ 91 (143)
T 2qv0_A 91 A 91 (143)
T ss_dssp S
T ss_pred C
Confidence 4
No 260
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=33.55 E-value=31 Score=31.26 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=48.4
Q ss_pred CcceEEEecchhhHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccCCC-CCCCc
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARGID-VQQVS 222 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~Gid-i~~~~ 222 (286)
+.++++.+|++.-+...++.++. .|..+..++|+.+...+ ..++.+|+|+|+ .+..+.. +.+++
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~ 140 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDE-------WLGKYDIIIATAEKFDSLLRHGSSWIKDVK 140 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCG-------GGGGCSEEEECHHHHHHHHHHTCTTGGGEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCcccc-------ccCCCCEEEECHHHHHHHHHcChhhhhcCC
Confidence 57999999999999999988853 37889999998765443 124788999996 1222222 45667
Q ss_pred EEEE
Q 023157 223 LVIN 226 (286)
Q Consensus 223 ~vi~ 226 (286)
+||+
T Consensus 141 ~vIi 144 (720)
T 2zj8_A 141 ILVA 144 (720)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 261
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=32.92 E-value=28 Score=26.21 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=30.5
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
+..++++||.+-..+...+..|+..|.++..+.|++.
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSLGVRARNYLGSMH 219 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHTTCEEEECSSHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHcCCCcEEecCcHH
Confidence 4568999999988899999999998866777777753
No 262
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=32.42 E-value=1.6e+02 Score=22.18 Aligned_cols=115 Identities=12% Similarity=0.188 Sum_probs=69.7
Q ss_pred cceEEEecchhhHHHHHHHHhcCC--CeeEEecCCCCHHHHHHHHHH-hhcCCCcEEEEec----CCccCCCCCCCcEEE
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSRD--HTVSATHGDMDQNTRDIIMRE-FRSGSSRVLITTD----LLARGIDVQQVSLVI 225 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~-f~~~~~~vlv~T~----~~~~Gidi~~~~~vi 225 (286)
.++++.++.....+...+...+.+ ..+..+.+.+... ....+. ...+..+|+||-. .+..-+++|
T Consensus 13 ~~ii~i~~~~~L~~~~~~i~~e~~~~~~I~vi~~~le~a--v~~a~~~~~~~~~dVIISRGgta~~Lr~~~~iP------ 84 (225)
T 2pju_A 13 KPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKA--VTYIRKKLANERCDAIIAAGSNGAYLKSRLSVP------ 84 (225)
T ss_dssp CCEEEEECCHHHHHHHHHHHTTTTTTCEEEEECCCHHHH--HHHHHHHTTTSCCSEEEEEHHHHHHHHTTCSSC------
T ss_pred CCEEEEEchHHHHHHHHHHHHhhCCCceEEEecCcHHHH--HHHHHHHHhcCCCeEEEeCChHHHHHHhhCCCC------
Confidence 466666777666664444444433 3455555665432 333333 4445689999984 344445443
Q ss_pred EccCCCCcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHHHhchhccc
Q 023157 226 NYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEE 277 (286)
Q Consensus 226 ~~~~~~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (286)
.+..+.|.-++++.+-++.+.+ +++.++..+.-......+++.++.++..
T Consensus 85 VV~I~vs~~Dil~aL~~a~~~~--~kIavVg~~~~~~~~~~i~~ll~~~i~~ 134 (225)
T 2pju_A 85 VILIKPSGYDVLQFLAKAGKLT--SSIGVVTYQETIPALVAFQKTFNLRLDQ 134 (225)
T ss_dssp EEEECCCHHHHHHHHHHTTCTT--SCEEEEEESSCCHHHHHHHHHHTCCEEE
T ss_pred EEEecCCHHHHHHHHHHHHhhC--CcEEEEeCchhhhHHHHHHHHhCCceEE
Confidence 3455677889999998886643 3555555555566677888888876553
No 263
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=32.10 E-value=54 Score=30.25 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=22.0
Q ss_pred CCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHh
Q 023157 31 GVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 67 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~ 67 (286)
..+||++|...+. +..+....+++||||||...
T Consensus 495 ~a~VI~~T~~~~~----~~~l~~~~fd~viIDEAsQ~ 527 (800)
T 2wjy_A 495 NADVICCTCVGAG----DPRLAKMQFRSILIDESTQA 527 (800)
T ss_dssp HCSEEEEETGGGG----CTTTTTCCCSEEEETTGGGS
T ss_pred cCCEEEEchhhhC----ChhhhcCCCCEEEEECCCCC
Confidence 5789999965432 22233345899999999643
No 264
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=32.06 E-value=49 Score=25.65 Aligned_cols=68 Identities=13% Similarity=0.124 Sum_probs=42.4
Q ss_pred CcceEEEecchhhHHHHHHHHhcCC----CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC--CccC-CCCCCCcEE
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRD----HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL--LARG-IDVQQVSLV 224 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~--~~~G-idi~~~~~v 224 (286)
..+++|.++++.-+...++.+++.+ ..+..++++.+..+ -..+..+|+|+|.- ...+ ......++|
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~v 229 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPKEWFSQFGMM 229 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCGGGGGGEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh-------hhccCCcEEEEchHHHHhhHHHHHhhCCEE
Confidence 3489999999998888888887653 24566666654322 12256789999952 1111 123455666
Q ss_pred EE
Q 023157 225 IN 226 (286)
Q Consensus 225 i~ 226 (286)
|+
T Consensus 230 Ii 231 (282)
T 1rif_A 230 MN 231 (282)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 265
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=31.12 E-value=1.7e+02 Score=22.00 Aligned_cols=38 Identities=11% Similarity=0.024 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCC
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDH 177 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~ 177 (286)
-...+..++...+ ....|||.+...|..+.+.+++.|+
T Consensus 174 ~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 174 ARSEMLRLLKETP-TIDGLFTPNESTTIGALVAIRQSGM 211 (276)
T ss_dssp HHHHHHHHHHHCS-CCCEEECCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCC-CceEEEECCchhhhHHHHHHHHcCC
Confidence 4455666666553 5678999998999989999988774
No 266
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=31.11 E-value=1.1e+02 Score=20.08 Aligned_cols=60 Identities=10% Similarity=0.152 Sum_probs=31.0
Q ss_pred cceEEEecc-hhh----HHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCC-CCC
Q 023157 153 TQSVIFVNT-RRK----VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGI-DVQ 219 (286)
Q Consensus 153 ~~~ivf~~~-~~~----~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi-di~ 219 (286)
.++++.|.+ ..+ +..+.+.+++.|+.+.+-+.+....+. ...+.+++++|.-+.... ++|
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~-------~~~~~DlIist~~l~~~~~~ip 87 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET-------YMDGVHLICTTARVDRSFGDIP 87 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT-------STTSCSEEEESSCCCCCSTTCC
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh-------ccCCCCEEEECCccccccCCCC
Confidence 468888876 222 344555566666654443433322111 113567888877655433 444
No 267
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=30.71 E-value=84 Score=26.96 Aligned_cols=68 Identities=12% Similarity=0.100 Sum_probs=40.3
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCC----CeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC------CccCCCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRD----HTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL------LARGIDVQQ 220 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gidi~~ 220 (286)
.+.++++.++++.-+...++.++..+ ..+....++.... -.....+|+|+|.. ....++...
T Consensus 188 ~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~ 259 (508)
T 3fho_A 188 PKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK--------GAKIDAQIVIGTPGTVMDLMKRRQLDARD 259 (508)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc--------cccCCCCEEEECHHHHHHHHHcCCccccC
Confidence 45589999999999999888887642 2223222222111 12336789999952 122456777
Q ss_pred CcEEEE
Q 023157 221 VSLVIN 226 (286)
Q Consensus 221 ~~~vi~ 226 (286)
+++||+
T Consensus 260 ~~lIIi 265 (508)
T 3fho_A 260 IKVFVL 265 (508)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888875
No 268
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=30.56 E-value=1.4e+02 Score=23.75 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=39.0
Q ss_pred cceEEEecc-----------hhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc
Q 023157 153 TQSVIFVNT-----------RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 200 (286)
Q Consensus 153 ~~~ivf~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 200 (286)
..+||+.+. ..+++.+++.|+..|+.|. ++.+++.++-.+.++.|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 358888887 5689999999999999865 5667899999999999854
No 269
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=30.16 E-value=1.1e+02 Score=19.67 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=10.8
Q ss_pred ceEEEecchhhHHHHHHHHhcCCCe
Q 023157 154 QSVIFVNTRRKVDWLTDKMRSRDHT 178 (286)
Q Consensus 154 ~~ivf~~~~~~~~~l~~~l~~~~~~ 178 (286)
+++|.-........+...|...|+.
T Consensus 9 ~ilivdd~~~~~~~l~~~L~~~g~~ 33 (130)
T 3eod_A 9 QILIVEDEQVFRSLLDSWFSSLGAT 33 (130)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCE
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCce
Confidence 3344444444444444444444443
No 270
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=29.97 E-value=1.5e+02 Score=21.05 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=31.0
Q ss_pred hhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc
Q 023157 162 RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 200 (286)
Q Consensus 162 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 200 (286)
...++.+.+.|+..|+.+. ++..++..+-.+.++.|..
T Consensus 54 ~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 91 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQL 91 (164)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHH
Confidence 5678889999999999875 5677888888888888854
No 271
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=29.85 E-value=1.1e+02 Score=19.56 Aligned_cols=108 Identities=12% Similarity=0.138 Sum_probs=56.7
Q ss_pred ccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc----CCCcEEEE
Q 023157 133 VEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS----GSSRVLIT 208 (286)
Q Consensus 133 ~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~ 208 (286)
++........+...+.... - .+..+.+..++ .+.+.+....+.++.-.++..+-...++.++. ....|++.
T Consensus 9 vdd~~~~~~~l~~~L~~~g-~-~v~~~~~~~~a---~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 83 (127)
T 3i42_A 9 VEDYQAAAETFKELLEMLG-F-QADYVMSGTDA---LHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAV 83 (127)
T ss_dssp ECSCHHHHHHHHHHHHHTT-E-EEEEESSHHHH---HHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEE
T ss_pred EcCCHHHHHHHHHHHHHcC-C-CEEEECCHHHH---HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEE
Confidence 4444445556666665542 2 34445554433 33445555677777766665555555555543 34567777
Q ss_pred ecCCccCCCCCC--CcEEEEccCCCCcchhhhhhcccccC
Q 023157 209 TDLLARGIDVQQ--VSLVINYDLPTQPENYLHRIGRSGRF 246 (286)
Q Consensus 209 T~~~~~Gidi~~--~~~vi~~~~~~s~~~~~Q~~GR~~R~ 246 (286)
|....... ... ....-.+..|.+..++.+++.+..+.
T Consensus 84 s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 84 SGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp ECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred ECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 76443332 111 01111345677888888888777654
No 272
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=29.75 E-value=39 Score=24.81 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=35.6
Q ss_pred CCcEEEeCcHHHHHHHh-----------------cCCCCCCCccEEEEehhhHhhccccHHHHHHHHHhCCcCccEEEEE
Q 023157 31 GVHVVVGTPGRVFDMLR-----------------RQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPAKVQVGVFS 93 (286)
Q Consensus 31 ~~~iii~Tp~~l~~~~~-----------------~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 93 (286)
+.+|.+.+|..-..... .....+.+=+.+||||+..+........+....+ .+.|+|++-
T Consensus 80 Gr~V~vLAp~~~s~~~l~~~~~l~~~t~t~~~ll~~~~~~tp~s~lIVD~AekLS~kE~~~Lld~A~~---~naqvvll~ 156 (189)
T 2l8b_A 80 GREVQIIAADRRSQMNMKQDERLSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAAR---HNVQVLITD 156 (189)
T ss_dssp TCCEEEECSTTHHHHHHSCTTTCSSCSSSTTTTTTTSCCCCCCCEEEEEESSSHHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred CeEEEEEcCchHHHHHHHhhcCcCcceeehhhhhcCCCCCCCCCEEEEechhhcCHHHHHHHHHHHHh---cCCEEEEeC
Confidence 67888888865543321 1111223336999999998765543333333222 357788775
Q ss_pred ee
Q 023157 94 AT 95 (286)
Q Consensus 94 AT 95 (286)
-+
T Consensus 157 ~~ 158 (189)
T 2l8b_A 157 SG 158 (189)
T ss_dssp SS
T ss_pred Cc
Confidence 55
No 273
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=28.94 E-value=46 Score=24.63 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=42.3
Q ss_pred HHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHH----HHHHHHHHhhcCCCcEEEEecCC
Q 023157 140 LETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQN----TRDIIMREFRSGSSRVLITTDLL 212 (286)
Q Consensus 140 ~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~----~r~~~~~~f~~~~~~vlv~T~~~ 212 (286)
++...+..+...-++++|...+-.+|..+++.+.. ++-+.-+|.+.... --.+..+.+.+.-.+|+-+|-.+
T Consensus 40 l~la~era~e~~Ik~iVVASssG~TA~k~~e~~~~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~tH~l 115 (206)
T 1t57_A 40 LELVGERADQLGIRNFVVASVSGETALRLSEMVEG-NIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAGSHAL 115 (206)
T ss_dssp HHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCCS-EEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEECCSCTT
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHccC-CEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEeeccc
Confidence 34444444455667888888999999999887733 33334444443211 01344455555567788777654
No 274
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=28.77 E-value=1.9e+02 Score=21.96 Aligned_cols=38 Identities=0% Similarity=0.036 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCC
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDH 177 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~ 177 (286)
-...+..++...+ ....|||.+...|..+.+.+++.|+
T Consensus 182 ~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~al~~~g~ 219 (293)
T 3l6u_A 182 SERVMRQVIDSGI-PFDAVYCHNDDIAMGVLEALKKAKI 219 (293)
T ss_dssp HHHHHHHHHHTTC-CCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCC-CCCEEEECCchHHHHHHHHHHhCCC
Confidence 4556666666543 5678999999999999999988876
No 275
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=28.60 E-value=73 Score=25.04 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=23.7
Q ss_pred cEEEEehhhHhhccc----------c---HHHHHHHHHhCCcCccEEEEEeecCh
Q 023157 57 KMFVLDEADEMLSRG----------F---KDQIYDIFQLLPAKVQVGVFSATMPP 98 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~----------~---~~~~~~i~~~~~~~~~~i~~SAT~~~ 98 (286)
.++++||+|.+.... . ...+...+.......+++++.+|-.+
T Consensus 110 ~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~ 164 (301)
T 3cf0_A 110 CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 164 (301)
T ss_dssp EEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCG
T ss_pred eEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCc
Confidence 699999999875320 0 12333333333344556777777554
No 276
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=28.41 E-value=2e+02 Score=22.05 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCC
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDH 177 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~ 177 (286)
-...+..++...+ ....|||.+...|..+.+.+++.|+
T Consensus 174 ~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~al~~~g~ 211 (305)
T 3g1w_A 174 SRRVAHQLLEDYP-NLAGIFATEANGGVGVGDAVRLESR 211 (305)
T ss_dssp HHHHHHHHHHHCT-TEEEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCC-CceEEEECCCcchhhHHHHHHhcCC
Confidence 4555666666543 5788999999999999999988775
No 277
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=27.90 E-value=13 Score=33.33 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=0.0
Q ss_pred CcEEEeCcHHHHHHHhcCCCCCCCccEEEEehh
Q 023157 32 VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEA 64 (286)
Q Consensus 32 ~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~ 64 (286)
.+++++|............+....|++||||||
T Consensus 343 ~~vv~~t~~~a~~~~~~~~~~~~~Fd~vIIDEA 375 (646)
T 4b3f_X 343 ANVVLATNTGASADGPLKLLPESYFDVVVIDEC 375 (646)
T ss_dssp CSEEEEETTTTCSSSGGGGSCTTCCSEEEETTG
T ss_pred cceeeeehhhhhhhhHHHhhhhccCCEEEEcCc
No 278
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=27.86 E-value=1.4e+02 Score=20.09 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=18.2
Q ss_pred HHhcCCCeeEEecCCCCHHHHHHHHHHhhc----CCCcEEEEe
Q 023157 171 KMRSRDHTVSATHGDMDQNTRDIIMREFRS----GSSRVLITT 209 (286)
Q Consensus 171 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~T 209 (286)
.+.+....+.++.-.++..+-...++.++. ....|++.|
T Consensus 46 ~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 46 FLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp HHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEE
T ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEE
Confidence 344444555555555544444444444432 234455544
No 279
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=27.86 E-value=82 Score=25.54 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=11.5
Q ss_pred ccEEEEehhhHhhc
Q 023157 56 IKMFVLDEADEMLS 69 (286)
Q Consensus 56 ~~~iIiDE~h~~~~ 69 (286)
..+|+|||+|.+..
T Consensus 144 ~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 144 PSIIFIDQVDALTG 157 (355)
T ss_dssp SEEEEEECGGGGTC
T ss_pred CeEEEEechHhhcc
Confidence 36999999998763
No 280
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=27.82 E-value=1.3e+02 Score=19.55 Aligned_cols=80 Identities=6% Similarity=0.123 Sum_probs=41.8
Q ss_pred cceEEEecch-hhHH----HHHHHHhcCCCe-eEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCCCCCcEEEE
Q 023157 153 TQSVIFVNTR-RKVD----WLTDKMRSRDHT-VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN 226 (286)
Q Consensus 153 ~~~ivf~~~~-~~~~----~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~vi~ 226 (286)
.++++.|.+- .+.. .+.+.+.+.++. +.+-+.....-+. . ..+.+++++|.-+..-++......++-
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~------~-~~~~DlIi~t~~l~~~~~~~~~~~vi~ 91 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKG------L-ASNYDIVVASNHLIHELDGRTNGKLIG 91 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHH------H-GGGCSEEEEETTTGGGTTTSCSSEEEE
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhh------c-cCCCcEEEECCchHHHhCcCCCceEEE
Confidence 4788888772 3333 444566667776 5554444332211 1 135789999887665555222233444
Q ss_pred ccCCCCcchhhhh
Q 023157 227 YDLPTQPENYLHR 239 (286)
Q Consensus 227 ~~~~~s~~~~~Q~ 239 (286)
+..-.+..++.+.
T Consensus 92 i~~~l~~~ei~~~ 104 (110)
T 3czc_A 92 LDNLMDDNEIKTK 104 (110)
T ss_dssp ESSTTCHHHHHHH
T ss_pred eeccCCHHHHHHH
Confidence 4333444444443
No 281
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=27.64 E-value=1.3e+02 Score=19.52 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=30.7
Q ss_pred cCcceEEEec------chhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHH
Q 023157 151 AITQSVIFVN------TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDII 194 (286)
Q Consensus 151 ~~~~~ivf~~------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~ 194 (286)
..++++||.. ....|..+.+.|.+.|+....+.=...++.+...
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l 63 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGL 63 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHH
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHH
Confidence 4579999994 6778899999999988776655433344444333
No 282
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=27.63 E-value=1.4e+02 Score=19.95 Aligned_cols=110 Identities=10% Similarity=-0.025 Sum_probs=56.9
Q ss_pred EEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc--CCCcEEE
Q 023157 130 YVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS--GSSRVLI 207 (286)
Q Consensus 130 ~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv 207 (286)
...+++.......+...+.......++..+.+..++... +.+....+.++.-.++..+-...++.++. ....|++
T Consensus 18 iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~---l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 94 (152)
T 3eul_A 18 VVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALEL---IKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLL 94 (152)
T ss_dssp EEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHH---HHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEE
T ss_pred EEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHH---HHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEE
Confidence 444555554566677777655433444456665555443 33344677777766655544555555543 2345666
Q ss_pred EecCCccC-----CCCCCCcEEEEccCCCCcchhhhhhccccc
Q 023157 208 TTDLLARG-----IDVQQVSLVINYDLPTQPENYLHRIGRSGR 245 (286)
Q Consensus 208 ~T~~~~~G-----idi~~~~~vi~~~~~~s~~~~~Q~~GR~~R 245 (286)
.|...... +.. +++.+ +..|.+..++.+++-++.+
T Consensus 95 ~s~~~~~~~~~~~~~~-g~~~~--l~Kp~~~~~l~~~i~~~~~ 134 (152)
T 3eul_A 95 ISAHDEPAIVYQALQQ-GAAGF--LLKDSTRTEIVKAVLDCAK 134 (152)
T ss_dssp EESCCCHHHHHHHHHT-TCSEE--EETTCCHHHHHHHHHHHHH
T ss_pred EEccCCHHHHHHHHHc-CCCEE--EecCCCHHHHHHHHHHHHc
Confidence 66432211 111 12222 3346666666666655544
No 283
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=27.57 E-value=1.4e+02 Score=25.31 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=30.8
Q ss_pred EEecCCccCCCCCCCcEEEEccCCC-----CcchhhhhhcccccCCCcceEEEEeccCcHHHHHHHHH
Q 023157 207 ITTDLLARGIDVQQVSLVINYDLPT-----QPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQK 269 (286)
Q Consensus 207 v~T~~~~~Gidi~~~~~vi~~~~~~-----s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~~~~ 269 (286)
+.|-....|...+.+..|..-..|. +.......+-|.- ..+.++...+......+..
T Consensus 371 ~~Tv~e~QG~tf~~Vtlvr~~~~~~~l~~~~~~~~~VALTRh~------~~L~~~tv~~D~~~~~i~~ 432 (446)
T 3vkw_A 371 VHTVHEVQGETYADVSLVRLTPTPVSIIARDSPHVLVSLSRHT------KSLKYYTVVMDPLVSIIRD 432 (446)
T ss_dssp CEETGGGTTCCEEEEEEEECCCSCCTTCSTTCHHHHHHHSSEE------EEEEEEESSCCHHHHHHHH
T ss_pred ccCHHHcCCcccCeEEEEECCCCCcccccCCccceEEEeecCC------CEEEEEEecCChHHHHHHH
Confidence 4566678898886665543322232 3455666666652 2344444445555555543
No 284
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=27.35 E-value=29 Score=25.25 Aligned_cols=12 Identities=17% Similarity=0.446 Sum_probs=9.6
Q ss_pred ccEEEEehhhHh
Q 023157 56 IKMFVLDEADEM 67 (286)
Q Consensus 56 ~~~iIiDE~h~~ 67 (286)
.++||+||++..
T Consensus 116 ~~~lilDei~~~ 127 (202)
T 2w58_A 116 VPVLMLDDLGAE 127 (202)
T ss_dssp SSEEEEEEECCC
T ss_pred CCEEEEcCCCCC
Confidence 479999999653
No 285
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=26.98 E-value=54 Score=25.09 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=16.1
Q ss_pred cEEEEehhhHhhccccHHHHHHHHHh
Q 023157 57 KMFVLDEADEMLSRGFKDQIYDIFQL 82 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~~~~~~~i~~~ 82 (286)
+++++||+|.+.... ...+..++..
T Consensus 102 ~~l~lDEi~~l~~~~-q~~Ll~~l~~ 126 (265)
T 2bjv_A 102 GTLFLDELATAPMMV-QEKLLRVIEY 126 (265)
T ss_dssp SEEEEESGGGSCHHH-HHHHHHHHHH
T ss_pred cEEEEechHhcCHHH-HHHHHHHHHh
Confidence 699999999875432 3344444443
No 286
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=26.92 E-value=2.1e+02 Score=21.88 Aligned_cols=59 Identities=7% Similarity=0.035 Sum_probs=41.3
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHH-HHHHHHhh--cCCCcEEEEec
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTR-DIIMREFR--SGSSRVLITTD 210 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r-~~~~~~f~--~~~~~vlv~T~ 210 (286)
+.++++.-.+...+++..+.+.+.+..+..+..+++..+. ...++... -|.+++||...
T Consensus 33 Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNNA 94 (255)
T 4g81_D 33 GARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINNA 94 (255)
T ss_dssp TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence 3466665566677788888888888888888888765543 34444442 37899999864
No 287
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=26.79 E-value=2.3e+02 Score=25.39 Aligned_cols=101 Identities=10% Similarity=0.191 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcC--CCeeEEec--------------------CCC--C---HHHH
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSR--DHTVSATH--------------------GDM--D---QNTR 191 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~--~~~~~~~~--------------------~~~--~---~~~r 191 (286)
+.-.+..++... ..+++|.+++...|..++..|+.. +..+..+- ... + ...|
T Consensus 45 k~~~~a~~~~~~-~~~~lvv~~~~~~A~~l~~el~~~~~~~~v~~fps~yd~~~pe~~~~~~d~y~~~~~~~~~~i~~~R 123 (661)
T 2d7d_A 45 KTFTVSNLIKEV-NKPTLVIAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLR 123 (661)
T ss_dssp HHHHHHHHHHHH-CCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECCCEEEEECCEEETTTTEEECCEEEECHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHHcCCCcEEEccccccccCccccCCcchhhhhhhcccCHHHHHHH
Confidence 444555555543 358999999999999999998765 22333322 111 1 4578
Q ss_pred HHHHHHhhcCCCcEEEEecCCccCCCCCC----CcEEEEccCCCCcchhhhhh
Q 023157 192 DIIMREFRSGSSRVLITTDLLARGIDVQQ----VSLVINYDLPTQPENYLHRI 240 (286)
Q Consensus 192 ~~~~~~f~~~~~~vlv~T~~~~~Gidi~~----~~~vi~~~~~~s~~~~~Q~~ 240 (286)
..++..+.+++..|+|+|-.+-.|+-.|. ....+-.|-..+...+.+++
T Consensus 124 l~~l~~L~~~~~~ivV~sv~al~~l~~~~~~~~~~~~l~~G~~~~~~~l~~~L 176 (661)
T 2d7d_A 124 HSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKL 176 (661)
T ss_dssp HHHHHHHHHCSCEEEEECGGGGSCBCCHHHHHHHCEEEETTCBCCHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEecHHHHcCCCCHHHHHhccEEEeCCCEeCHHHHHHHH
Confidence 88888887766667788754446653332 22344555555555555443
No 288
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=26.63 E-value=1.5e+02 Score=20.10 Aligned_cols=52 Identities=4% Similarity=-0.002 Sum_probs=34.5
Q ss_pred HHHHHHHhhccCcceEEEec------chhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHH
Q 023157 141 ETLCDLYETLAITQSVIFVN------TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIM 195 (286)
Q Consensus 141 ~~l~~~~~~~~~~~~ivf~~------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 195 (286)
..+..++.. .+++||+. ....|..+.+.|.+.++....+.-...++.+..+.
T Consensus 26 ~~v~~~i~~---~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~ 83 (135)
T 2wci_A 26 EKIQRQIAE---NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELP 83 (135)
T ss_dssp HHHHHHHHH---CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHH
T ss_pred HHHHHHhcc---CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHH
Confidence 344444433 57889987 57788999999999888766665544544444443
No 289
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=26.39 E-value=72 Score=26.96 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=10.4
Q ss_pred cEEEEehhhHhh
Q 023157 57 KMFVLDEADEML 68 (286)
Q Consensus 57 ~~iIiDE~h~~~ 68 (286)
++++|||+|.+.
T Consensus 297 ~VliIDEa~~l~ 308 (456)
T 2c9o_A 297 GVLFVDEVHMLD 308 (456)
T ss_dssp CEEEEESGGGCB
T ss_pred eEEEEechhhcC
Confidence 599999999874
No 290
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=26.32 E-value=1.2e+02 Score=21.09 Aligned_cols=73 Identities=14% Similarity=0.245 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCC---CcEEEEecCCccCCCCCCCcEEEEccCCCCcchhhh
Q 023157 162 RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGS---SRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH 238 (286)
Q Consensus 162 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vlv~T~~~~~Gidi~~~~~vi~~~~~~s~~~~~Q 238 (286)
...++.+.+.|+..|+.+. ++.+++..+-.+.++.|.+.+ .+.+|+. .++.|.. ..|.-.|.+.+..++..
T Consensus 40 ~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~dh~~~dc~vv~-ilSHG~~----g~i~g~D~~~~l~~i~~ 113 (146)
T 2dko_A 40 DVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKEDHSKRSSFVCV-LLSHGEE----GIIFGTNGPVDLKKITN 113 (146)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHSCCTTEEEEEEE-EESCEET----TEEEETTEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHHhhcCCCCeEEEE-eccCCCC----CEEEEeCCcEeHHHHHH
Confidence 4478899999999999865 455788888888888886432 2333332 2344432 34444444444555555
Q ss_pred hh
Q 023157 239 RI 240 (286)
Q Consensus 239 ~~ 240 (286)
..
T Consensus 114 ~F 115 (146)
T 2dko_A 114 FF 115 (146)
T ss_dssp TT
T ss_pred Hh
Confidence 44
No 291
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=26.26 E-value=41 Score=26.36 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=41.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 200 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 200 (286)
+.+.+|||.+....++.+.+.|+..|+.+. ++.+++.++-.+.++.|..
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQ-KFLHLSMHGISQILGQFAC 90 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEE-EEESCBHHHHHHHHHHHHT
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 446799999999999999999999998866 4567888888899999865
No 292
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=25.81 E-value=69 Score=24.83 Aligned_cols=36 Identities=11% Similarity=0.005 Sum_probs=28.0
Q ss_pred cCcceEEEecchhh-HHHHHHHHhcCCC-eeEEecCCC
Q 023157 151 AITQSVIFVNTRRK-VDWLTDKMRSRDH-TVSATHGDM 186 (286)
Q Consensus 151 ~~~~~ivf~~~~~~-~~~l~~~l~~~~~-~~~~~~~~~ 186 (286)
+..+++|||.+-.. +..++..|+..|+ ++..+.|++
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~ 122 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL 122 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 45688999987555 8888999999888 577777754
No 293
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=25.73 E-value=40 Score=26.06 Aligned_cols=36 Identities=11% Similarity=0.018 Sum_probs=29.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDM 186 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 186 (286)
+..++++||.+-..+...+..|+..|+. +..+.|++
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~ 258 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 258 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcH
Confidence 4568999999988888889999999984 77777765
No 294
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=25.54 E-value=1.3e+02 Score=18.96 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=30.6
Q ss_pred CcceEEEec------chhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHH
Q 023157 152 ITQSVIFVN------TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMRE 197 (286)
Q Consensus 152 ~~~~ivf~~------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 197 (286)
.++++||+. ....|..+...|.+.++....+.-...++.+....+.
T Consensus 16 ~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~ 67 (105)
T 2yan_A 16 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAY 67 (105)
T ss_dssp SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHH
Confidence 457889984 5678888888888877776666554454444444443
No 295
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=24.98 E-value=1e+02 Score=23.92 Aligned_cols=13 Identities=38% Similarity=0.739 Sum_probs=11.2
Q ss_pred cEEEEehhhHhhc
Q 023157 57 KMFVLDEADEMLS 69 (286)
Q Consensus 57 ~~iIiDE~h~~~~ 69 (286)
.+|++||+|.+..
T Consensus 115 ~vl~iDEid~l~~ 127 (297)
T 3b9p_A 115 SIIFIDEVDSLLS 127 (297)
T ss_dssp EEEEEETGGGTSB
T ss_pred cEEEeccHHHhcc
Confidence 6999999998754
No 296
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=24.72 E-value=1.2e+02 Score=24.44 Aligned_cols=52 Identities=8% Similarity=0.098 Sum_probs=37.3
Q ss_pred CcceEEEecchhhHHHHHHHHhcCCCee-EEecCCCCHHHHHHHHHHhhcCCC
Q 023157 152 ITQSVIFVNTRRKVDWLTDKMRSRDHTV-SATHGDMDQNTRDIIMREFRSGSS 203 (286)
Q Consensus 152 ~~~~ivf~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~r~~~~~~f~~~~~ 203 (286)
-+-++||++-......+.+.+...|... ..+.++++..+..++.+.-+....
T Consensus 80 ~DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~ 132 (334)
T 3mwd_B 80 VDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGV 132 (334)
T ss_dssp CCEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred CcEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 3567788888777788888888788754 455888998776666666555443
No 297
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=24.66 E-value=1.5e+02 Score=19.33 Aligned_cols=109 Identities=10% Similarity=0.102 Sum_probs=57.0
Q ss_pred EccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc----CCCcEEE
Q 023157 132 NVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS----GSSRVLI 207 (286)
Q Consensus 132 ~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv 207 (286)
.+++.......+...+.... -. +..+.+..++ .+.+......+.++.-.++..+-...++.++. ....|++
T Consensus 11 ivdd~~~~~~~l~~~l~~~g-~~-v~~~~~~~~a---~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (140)
T 3grc_A 11 ICEDDPDIARLLNLMLEKGG-FD-SDMVHSAAQA---LEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVV 85 (140)
T ss_dssp EECSCHHHHHHHHHHHHHTT-CE-EEEECSHHHH---HHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEE
T ss_pred EEcCCHHHHHHHHHHHHHCC-Ce-EEEECCHHHH---HHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEE
Confidence 34444445556666665432 23 4455554444 33445555677777766666555566666654 3466777
Q ss_pred EecCCccCC---CCCCCcEEEEccCCCCcchhhhhhccccc
Q 023157 208 TTDLLARGI---DVQQVSLVINYDLPTQPENYLHRIGRSGR 245 (286)
Q Consensus 208 ~T~~~~~Gi---di~~~~~vi~~~~~~s~~~~~Q~~GR~~R 245 (286)
.|+...... ..-.....-.+..|.+..++.+++.++.+
T Consensus 86 ~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~ 126 (140)
T 3grc_A 86 VSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAID 126 (140)
T ss_dssp ECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 775322110 11111222234557777777777766544
No 298
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=24.55 E-value=1.5e+02 Score=19.26 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=45.7
Q ss_pred cchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCC-----HHHHHHHHHHhhc--CCCcEE
Q 023157 134 EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD-----QNTRDIIMREFRS--GSSRVL 206 (286)
Q Consensus 134 ~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~~r~~~~~~f~~--~~~~vl 206 (286)
+........+...+... +- .+..+.+..++. +.+.+....+.++.-.++ ..+-...++.++. ....|+
T Consensus 10 dd~~~~~~~l~~~L~~~-g~-~v~~~~~~~~a~---~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii 84 (140)
T 2qr3_A 10 DDNKGVLTAVQLLLKNH-FS-KVITLSSPVSLS---TVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVV 84 (140)
T ss_dssp CSCHHHHHHHHHHHTTT-SS-EEEEECCHHHHH---HHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEE
T ss_pred eCCHHHHHHHHHHHHhC-Cc-EEEEeCCHHHHH---HHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEE
Confidence 33333445555555543 22 333444433333 334444456666665554 3333333443332 245556
Q ss_pred EEecCCcc-----CCCCCCCcEEEEccCCCCcchhhhhhccccc
Q 023157 207 ITTDLLAR-----GIDVQQVSLVINYDLPTQPENYLHRIGRSGR 245 (286)
Q Consensus 207 v~T~~~~~-----Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R 245 (286)
+.|..... .+.. .++.+ +..|.+..++.+++.++.+
T Consensus 85 ~ls~~~~~~~~~~~~~~-g~~~~--l~kp~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 85 LFTAYADIDLAVRGIKE-GASDF--VVKPWDNQKLLETLLNAAS 125 (140)
T ss_dssp EEEEGGGHHHHHHHHHT-TCCEE--EEESCCHHHHHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHHc-Cchhe--eeCCCCHHHHHHHHHHHHH
Confidence 55542211 1111 11222 2336666677666666544
No 299
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}
Probab=24.48 E-value=41 Score=22.71 Aligned_cols=36 Identities=3% Similarity=0.231 Sum_probs=27.2
Q ss_pred CcceEEEecchhh---------HHHHHHHHhcCCCeeEEecCCCC
Q 023157 152 ITQSVIFVNTRRK---------VDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 152 ~~~~ivf~~~~~~---------~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
..+++|||.+-.. +..++..|...|+++..+.|++.
T Consensus 83 ~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~~v~~l~GG~~ 127 (142)
T 2ouc_A 83 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 127 (142)
T ss_dssp HSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred CCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCCcEEEEccCHH
Confidence 4689999987554 35677888888888888888753
No 300
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=24.47 E-value=1.6e+02 Score=19.65 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=35.8
Q ss_pred EEccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc--CCCcEEEE
Q 023157 131 VNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS--GSSRVLIT 208 (286)
Q Consensus 131 ~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~ 208 (286)
..++........+...+.... -.+..+.+..++.. .+......+.++.-.++..+-...++.++. ....|++.
T Consensus 18 Livdd~~~~~~~l~~~L~~~g--~~v~~~~~~~~a~~---~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 92 (153)
T 3hv2_A 18 LLVDSQEVILQRLQQLLSPLP--YTLHFARDATQALQ---LLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILL 92 (153)
T ss_dssp EEECSCHHHHHHHHHHHTTSS--CEEEEESSHHHHHH---HHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred EEECCCHHHHHHHHHHhcccC--cEEEEECCHHHHHH---HHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEE
Confidence 334444435555566665432 23444555444433 334445566666655554444444444432 34455555
Q ss_pred ec
Q 023157 209 TD 210 (286)
Q Consensus 209 T~ 210 (286)
|.
T Consensus 93 s~ 94 (153)
T 3hv2_A 93 TG 94 (153)
T ss_dssp CC
T ss_pred EC
Confidence 54
No 301
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=24.30 E-value=3.1e+02 Score=22.78 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=19.7
Q ss_pred HHHHHHHhhccCcceEEEecchhhHHHHHHHHh
Q 023157 141 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR 173 (286)
Q Consensus 141 ~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~ 173 (286)
+.+...++.. .+.+++++.|...+..+.+.|.
T Consensus 393 ~ai~~a~~~~-~~d~vLv~GS~~~~~~~~~~l~ 424 (428)
T 1jbw_A 393 EALAASLNDV-PDQPIVITGSLYLASAVRQTLL 424 (428)
T ss_dssp HHHHHHHHHC-TTSCEEEEESHHHHHHHHHHHT
T ss_pred HHHHHHHhhC-CCCeEEEEeeHHHHHHHHHHHh
Confidence 3444444433 4567777888888777766664
No 302
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=24.01 E-value=76 Score=25.31 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=11.0
Q ss_pred ccEEEEehhhHhh
Q 023157 56 IKMFVLDEADEML 68 (286)
Q Consensus 56 ~~~iIiDE~h~~~ 68 (286)
..+|+|||+|.+.
T Consensus 106 ~~vl~iDEid~l~ 118 (322)
T 1xwi_A 106 PSIIFIDEIDSLC 118 (322)
T ss_dssp SEEEEEETTTGGG
T ss_pred CcEEEeecHHHhc
Confidence 3699999999874
No 303
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=23.70 E-value=1.9e+02 Score=23.94 Aligned_cols=47 Identities=11% Similarity=0.033 Sum_probs=22.3
Q ss_pred EEEEehhhHhhccccHHHHHHHHHhCC-cCccEEEEEeecChhHHHHHHHh
Q 023157 58 MFVLDEADEMLSRGFKDQIYDIFQLLP-AKVQVGVFSATMPPEALEITRKF 107 (286)
Q Consensus 58 ~iIiDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~~~ 107 (286)
.+|+|-+|+... ....+..+ +..+ ....++.+...-..+...+....
T Consensus 298 ~~i~D~Ahnp~s--~~~~l~~l-~~~~~~~~~i~V~g~~~~kd~~~~~~~l 345 (422)
T 1w78_A 298 RVIFDVAHNPHA--AEYLTGRM-KALPKNGRVLAVIGMLHDKDIAGTLAWL 345 (422)
T ss_dssp EEEEECCCSHHH--HHHHHHHH-HHSCSCSCEEEEECCBTTSCHHHHHHHH
T ss_pred eEEEECCCCHHH--HHHHHHHH-HHhCCCCCEEEEEeccCCCCHHHHHHHH
Confidence 578999995321 12333333 3333 23345555544444444444443
No 304
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=23.61 E-value=1.2e+02 Score=27.25 Aligned_cols=53 Identities=11% Similarity=0.099 Sum_probs=38.0
Q ss_pred cCceEEEEEcCcchHHHH---HHHh---CCCcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhhHh
Q 023157 8 LGVKVHACVGGTSVREDQ---RILQ---AGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEM 67 (286)
Q Consensus 8 ~~~~~~~~~g~~~~~~~~---~~~~---~~~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h~~ 67 (286)
.+..+..+||+.+.+++. +... +..+|+|+|. .....+++ ++++||.-....+
T Consensus 343 ~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd------i~e~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 343 RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD------AIGMGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG------GGGSSCCC-CBSEEEESCSBC-
T ss_pred cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc------HHHCCcCc-CccEEEECCcccc
Confidence 478899999999877433 3333 4589999994 33456777 7899998877543
No 305
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=23.56 E-value=91 Score=25.09 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=10.3
Q ss_pred cEEEEehhhHhh
Q 023157 57 KMFVLDEADEML 68 (286)
Q Consensus 57 ~~iIiDE~h~~~ 68 (286)
.+++|||+|.+.
T Consensus 191 ~vl~IDEi~~l~ 202 (368)
T 3uk6_A 191 GVLFIDEVHMLD 202 (368)
T ss_dssp CEEEEESGGGSB
T ss_pred ceEEEhhccccC
Confidence 499999999764
No 306
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=23.38 E-value=1.7e+02 Score=19.54 Aligned_cols=99 Identities=8% Similarity=-0.039 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc--CCCcEEEEecCCcc--
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS--GSSRVLITTDLLAR-- 214 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~-- 214 (286)
....+...+... +-. +..+.+.. .....+......+.++.-.++..+-...++.++. ....|++.|.....
T Consensus 15 ~~~~l~~~L~~~-g~~-v~~~~~~~---~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~~ 89 (155)
T 1qkk_A 15 LRKAMQQTLELA-GFT-VSSFASAT---EALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIPM 89 (155)
T ss_dssp HHHHHHHHHHHT-TCE-EEEESCHH---HHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHHH
T ss_pred HHHHHHHHHHHc-CcE-EEEECCHH---HHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCChHH
Confidence 444455555432 222 33444433 3334444445566666555543333333333322 24556655543221
Q ss_pred ---CCCCCCCcEEEEccCCCCcchhhhhhccccc
Q 023157 215 ---GIDVQQVSLVINYDLPTQPENYLHRIGRSGR 245 (286)
Q Consensus 215 ---Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R 245 (286)
.+.. .++.+ +..|.+..++.+++.++.+
T Consensus 90 ~~~~~~~-g~~~~--l~kP~~~~~L~~~i~~~~~ 120 (155)
T 1qkk_A 90 AVQAIQD-GAYDF--IAKPFAADRLVQSARRAEE 120 (155)
T ss_dssp HHHHHHT-TCCEE--EESSCCHHHHHHHHHHHHH
T ss_pred HHHHHhc-CCCeE--EeCCCCHHHHHHHHHHHHH
Confidence 1111 11222 3346666677666665543
No 307
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=23.35 E-value=53 Score=28.35 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=25.4
Q ss_pred ccEEEEehhhHhhccc--cHHHHHHHHHhCCcCccEEEEEeecC
Q 023157 56 IKMFVLDEADEMLSRG--FKDQIYDIFQLLPAKVQVGVFSATMP 97 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~i~~SAT~~ 97 (286)
-.+|+|||+|.+.... ....+..++... +.++++++++..
T Consensus 149 ~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~ 190 (516)
T 1sxj_A 149 HFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERN 190 (516)
T ss_dssp SEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTT
T ss_pred CeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 4699999999876532 224445555442 455777777653
No 308
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=23.34 E-value=1.5e+02 Score=18.87 Aligned_cols=45 Identities=9% Similarity=0.033 Sum_probs=32.1
Q ss_pred CcceEEEec------chhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHH
Q 023157 152 ITQSVIFVN------TRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 196 (286)
Q Consensus 152 ~~~~ivf~~------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 196 (286)
..+++||+. ....|..+...|.+.++....+.=....+.+....+
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~ 64 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKT 64 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHH
Confidence 457888887 456788889999998888777766655554444443
No 309
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=23.28 E-value=1.7e+02 Score=19.51 Aligned_cols=16 Identities=6% Similarity=0.125 Sum_probs=7.6
Q ss_pred HhcCCCeeEEecCCCC
Q 023157 172 MRSRDHTVSATHGDMD 187 (286)
Q Consensus 172 l~~~~~~~~~~~~~~~ 187 (286)
+......+.++.-.++
T Consensus 47 l~~~~~dlvi~d~~l~ 62 (154)
T 2rjn_A 47 LKGTSVQLVISDMRMP 62 (154)
T ss_dssp HTTSCCSEEEEESSCS
T ss_pred HhcCCCCEEEEecCCC
Confidence 3344455555554444
No 310
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=23.27 E-value=1.2e+02 Score=22.88 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=10.9
Q ss_pred cEEEEehhhHhhc
Q 023157 57 KMFVLDEADEMLS 69 (286)
Q Consensus 57 ~~iIiDE~h~~~~ 69 (286)
.++++||+|.+..
T Consensus 106 ~il~iDeid~l~~ 118 (257)
T 1lv7_A 106 CIIFIDEIDAVGR 118 (257)
T ss_dssp EEEEETTHHHHTC
T ss_pred eeehhhhhhhhcc
Confidence 5899999998764
No 311
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=23.14 E-value=80 Score=24.77 Aligned_cols=37 Identities=5% Similarity=-0.119 Sum_probs=30.2
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCe-eEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHT-VSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 187 (286)
...++++||.+-..+...+..|...|+. +..+.|++.
T Consensus 239 ~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 239 LTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWF 276 (296)
T ss_dssp TTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHH
Confidence 4568999999988888888889888884 788888754
No 312
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=23.09 E-value=1.6e+02 Score=18.94 Aligned_cols=61 Identities=8% Similarity=0.046 Sum_probs=27.3
Q ss_pred cchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhh
Q 023157 134 EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR 199 (286)
Q Consensus 134 ~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 199 (286)
+........+...+... +..+..+.+..++. +.+.+....+.++.-.++..+-...++.++
T Consensus 13 dd~~~~~~~l~~~L~~~--g~~v~~~~~~~~a~---~~l~~~~~dlii~d~~l~~~~g~~~~~~l~ 73 (132)
T 3lte_A 13 DDDQAMAAAIERVLKRD--HWQVEIAHNGFDAG---IKLSTFEPAIMTLDLSMPKLDGLDVIRSLR 73 (132)
T ss_dssp CSCHHHHHHHHHHHHHT--TCEEEEESSHHHHH---HHHHHTCCSEEEEESCBTTBCHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHHC--CcEEEEeCCHHHHH---HHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 33333444455555432 12233444433332 333444455666665555444445555554
No 313
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=22.62 E-value=2e+02 Score=22.89 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=38.3
Q ss_pred CcceEEEecc-------------hhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcC
Q 023157 152 ITQSVIFVNT-------------RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG 201 (286)
Q Consensus 152 ~~~~ivf~~~-------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 201 (286)
.+-+|||.+. ...++.+++.|+..|+.|. ++.+++..+-.+.++.|.+.
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHSS
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHh
Confidence 3457777664 6778999999999999875 55678888888999998643
No 314
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=22.57 E-value=1.1e+02 Score=25.09 Aligned_cols=12 Identities=25% Similarity=0.686 Sum_probs=10.5
Q ss_pred cEEEEehhhHhh
Q 023157 57 KMFVLDEADEML 68 (286)
Q Consensus 57 ~~iIiDE~h~~~ 68 (286)
.+|++||+|.+.
T Consensus 209 ~il~iDEid~l~ 220 (389)
T 3vfd_A 209 SIIFIDQVDSLL 220 (389)
T ss_dssp EEEEEETGGGGC
T ss_pred eEEEEECchhhc
Confidence 699999999874
No 315
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.45 E-value=25 Score=29.84 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=10.6
Q ss_pred ccEEEEehhhHhhcc
Q 023157 56 IKMFVLDEADEMLSR 70 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~ 70 (286)
-.+++|||+|.+...
T Consensus 107 ~~iLfIDEI~~l~~~ 121 (447)
T 3pvs_A 107 RTILFVDEVHRFNKS 121 (447)
T ss_dssp CEEEEEETTTCC---
T ss_pred CcEEEEeChhhhCHH
Confidence 479999999987543
No 316
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=22.33 E-value=2.9e+02 Score=21.78 Aligned_cols=39 Identities=5% Similarity=0.027 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCe
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT 178 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~ 178 (286)
-......++...+ ....|||.+...|..+.+.+++.|..
T Consensus 192 ~~~~~~~~L~~~~-~~~aI~~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 192 AYRQAQQLLKRYP-KTQLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp HHHHHHHHHHHCT-TEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCC-CcCEEEECChHHHHHHHHHHHHcCCC
Confidence 4455666676554 56789999999999999999888754
No 317
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=22.29 E-value=55 Score=26.00 Aligned_cols=49 Identities=14% Similarity=0.047 Sum_probs=31.2
Q ss_pred cccccccCceEEEEEcCcchHHHHHHHhC--CCcEEEeCcHHHHHHHhcCC
Q 023157 2 RALGDYLGVKVHACVGGTSVREDQRILQA--GVHVVVGTPGRVFDMLRRQS 50 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~iii~Tp~~l~~~~~~~~ 50 (286)
++|.+.+|++|.....+....-..++..+ ++||++.+...+..+...+.
T Consensus 28 ~~Fek~tGIkV~~~~~~s~e~~~~kl~ag~~~~DVv~~~~~~~~~~~~~gl 78 (333)
T 4gl0_A 28 TKFEKETGIKVIYQTFDSNEAMMTKIEQGGTTFDIAVPSDYAISKMKEENL 78 (333)
T ss_dssp HHHHHHHCCEEEEEEESCHHHHHHHHHTCSSCCSEECCBHHHHHHHHHTTC
T ss_pred HHHHHHHCCEEEEEeCCCHHHHHHHHHcCCCCCeEEEeCHHHHHHHHHcCC
Confidence 46777889999887765443222222222 68999888777776666543
No 318
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=22.22 E-value=1.7e+02 Score=19.09 Aligned_cols=105 Identities=10% Similarity=0.118 Sum_probs=54.6
Q ss_pred ccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc--CCCcEEEEec
Q 023157 133 VEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS--GSSRVLITTD 210 (286)
Q Consensus 133 ~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~ 210 (286)
++........+...+... +-. ++.+.+..+ ..+.+......+.++.. ++..+-...++.++. ....|++.|.
T Consensus 10 vdd~~~~~~~l~~~L~~~-g~~-v~~~~~~~~---a~~~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~ 83 (142)
T 2qxy_A 10 VDESRITFLAVKNALEKD-GFN-VIWAKNEQE---AFTFLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSA 83 (142)
T ss_dssp ECSCHHHHHHHHHHHGGG-TCE-EEEESSHHH---HHHHHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred EeCCHHHHHHHHHHHHhC-CCE-EEEECCHHH---HHHHHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEEC
Confidence 344443555666666542 223 335555433 33445555667777777 766555555655543 2456676665
Q ss_pred CCcc-----CCCCCCCcEEEEccCCCCcchhhhhhcccccC
Q 023157 211 LLAR-----GIDVQQVSLVINYDLPTQPENYLHRIGRSGRF 246 (286)
Q Consensus 211 ~~~~-----Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R~ 246 (286)
.... .+.. .++. .+..|.+..++.+++.++.+.
T Consensus 84 ~~~~~~~~~~~~~-g~~~--~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 84 YVDKDLIINSVKA-GAVD--YILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp CCCHHHHHHHHHH-TCSC--EEESSCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHC-Ccce--eEeCCCCHHHHHHHHHHHHhh
Confidence 3221 1111 1111 233477777777777666543
No 319
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=22.14 E-value=2.2e+02 Score=20.25 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=32.9
Q ss_pred hhHHHHHHHHhcCCCeeEEe--cCCCCHHHHHHHHHHhh-cCCCcEEEEecCCccCCC
Q 023157 163 RKVDWLTDKMRSRDHTVSAT--HGDMDQNTRDIIMREFR-SGSSRVLITTDLLARGID 217 (286)
Q Consensus 163 ~~~~~l~~~l~~~~~~~~~~--~~~~~~~~r~~~~~~f~-~~~~~vlv~T~~~~~Gid 217 (286)
.....++..|++.|+.+..+ -.+ ..+.-.+.++... +++.+++|+|.-.+.|-|
T Consensus 28 ~n~~~l~~~L~~~G~~v~~~~iv~D-d~~~i~~~l~~a~~~~~~DlVittGG~g~~~~ 84 (172)
T 1mkz_A 28 TSGHYLRDSAQEAGHHVVDKAIVKE-NRYAIRAQVSAWIASDDVQVVLITGGTGLTEG 84 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECS-CHHHHHHHHHHHHHSSSCCEEEEESCCSSSTT
T ss_pred ccHHHHHHHHHHCCCeEeEEEEeCC-CHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCC
Confidence 34567888888888765432 233 3333334444443 346899999987766643
No 320
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=22.09 E-value=1.9e+02 Score=23.16 Aligned_cols=48 Identities=10% Similarity=0.069 Sum_probs=38.5
Q ss_pred CcceEEEecch------------hhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc
Q 023157 152 ITQSVIFVNTR------------RKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 200 (286)
Q Consensus 152 ~~~~ivf~~~~------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 200 (286)
.+-+|||.+.. .+++.+.+.|+..|+.|. ++.+++..+-.+.++.|.+
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIF-PYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEE-EECSCCHHHHHHHHHHHHT
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EccCCCHHHHHHHHHHHHH
Confidence 45677877652 679999999999998864 6778899998999998853
No 321
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=21.99 E-value=1.8e+02 Score=21.84 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=10.7
Q ss_pred ccEEEEehhhHhh
Q 023157 56 IKMFVLDEADEML 68 (286)
Q Consensus 56 ~~~iIiDE~h~~~ 68 (286)
..++++||+|.+.
T Consensus 109 ~~i~~~Deid~l~ 121 (254)
T 1ixz_A 109 PCIVFIDEIDAVG 121 (254)
T ss_dssp SEEEEEETHHHHH
T ss_pred CeEEEehhhhhhh
Confidence 3689999999775
No 322
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=21.95 E-value=2.8e+02 Score=21.39 Aligned_cols=40 Identities=3% Similarity=0.018 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCe
Q 023157 139 KLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT 178 (286)
Q Consensus 139 ~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~ 178 (286)
-...+..++...+.....|||.+...|..+.+.+++.|+.
T Consensus 174 ~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 174 ALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHHHHTTTCCCEEEESSHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHHHcCCC
Confidence 4556667776653467889999999999999999988763
No 323
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=21.94 E-value=1.9e+02 Score=22.45 Aligned_cols=48 Identities=10% Similarity=0.197 Sum_probs=37.9
Q ss_pred cceEEEecc-------------hhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcC
Q 023157 153 TQSVIFVNT-------------RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSG 201 (286)
Q Consensus 153 ~~~ivf~~~-------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 201 (286)
+-+|||.+. ..+++.+++.|+..|+.|. ++.+++..+-.+.++.|.+.
T Consensus 33 g~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 33 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 456777654 6789999999999999875 55678889889999999643
No 324
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=21.93 E-value=1.1e+02 Score=23.57 Aligned_cols=36 Identities=6% Similarity=-0.007 Sum_probs=27.5
Q ss_pred cCcceEEEecchh-hHHHHHHHHhcCCC-eeEEecCCC
Q 023157 151 AITQSVIFVNTRR-KVDWLTDKMRSRDH-TVSATHGDM 186 (286)
Q Consensus 151 ~~~~~ivf~~~~~-~~~~l~~~l~~~~~-~~~~~~~~~ 186 (286)
+..+++|||.+-. .+..++..|+..|+ ++..+.|++
T Consensus 80 ~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~ 117 (271)
T 1e0c_A 80 PEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGL 117 (271)
T ss_dssp TTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHH
T ss_pred CCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCH
Confidence 4567888888765 78888889999888 477777764
No 325
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=21.80 E-value=70 Score=30.25 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=39.7
Q ss_pred ccCceEEEEEcCcchHHHHHHHh---C-C--CcEEEeCcHHHHHHHhcCCCCCCCccEEEEehhh
Q 023157 7 YLGVKVHACVGGTSVREDQRILQ---A-G--VHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEAD 65 (286)
Q Consensus 7 ~~~~~~~~~~g~~~~~~~~~~~~---~-~--~~iii~Tp~~l~~~~~~~~~~~~~~~~iIiDE~h 65 (286)
..|+++..++|+.+..++...+. . . ++|+|+|. .....+++..++.||+-+..
T Consensus 526 ~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~------v~~~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 526 REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE------IGSEGRNFQFASHMVMFDLP 584 (968)
T ss_dssp TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC------CTTCSSCCTTCCEEECSSCC
T ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc------hhhcCCCcccCcEEEEecCC
Confidence 45899999999988766665443 2 3 89999993 23456788889999887665
No 326
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=21.66 E-value=1.8e+02 Score=19.13 Aligned_cols=42 Identities=17% Similarity=0.104 Sum_probs=30.2
Q ss_pred cceEEEec------chhhHHHHHHHHhcCCCe-eEEecCCCCHHHHHHH
Q 023157 153 TQSVIFVN------TRRKVDWLTDKMRSRDHT-VSATHGDMDQNTRDII 194 (286)
Q Consensus 153 ~~~ivf~~------~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~ 194 (286)
++++||.. ..-.|..+.+.|.+.++. ...+.=...++.+..+
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l 68 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGI 68 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHH
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHH
Confidence 68999998 488899999999998874 5555544444444433
No 327
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=21.51 E-value=1.2e+02 Score=25.90 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=24.4
Q ss_pred ccEEEEehhhHhhccc----------cHHHHHHHHHh---CCcCccEEEEEeecChh
Q 023157 56 IKMFVLDEADEMLSRG----------FKDQIYDIFQL---LPAKVQVGVFSATMPPE 99 (286)
Q Consensus 56 ~~~iIiDE~h~~~~~~----------~~~~~~~i~~~---~~~~~~~i~~SAT~~~~ 99 (286)
..+|++||+|.+.... ....+..++.. +..+..++.+.+|-.++
T Consensus 109 p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 109 PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 3699999999875321 01223333332 33345577777776543
No 328
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=21.47 E-value=1.1e+02 Score=24.75 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=11.5
Q ss_pred ccEEEEehhhHhhc
Q 023157 56 IKMFVLDEADEMLS 69 (286)
Q Consensus 56 ~~~iIiDE~h~~~~ 69 (286)
..+|+|||+|.+..
T Consensus 177 ~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 177 PAVIFIDEIDSLLS 190 (357)
T ss_dssp SEEEEEETHHHHTB
T ss_pred CeEEEEeCchhhhc
Confidence 36999999998754
No 329
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=21.41 E-value=49 Score=26.21 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=15.1
Q ss_pred cEEEEehhhHhhccccHHHHHHHHH
Q 023157 57 KMFVLDEADEMLSRGFKDQIYDIFQ 81 (286)
Q Consensus 57 ~~iIiDE~h~~~~~~~~~~~~~i~~ 81 (286)
+.+++||+|.+.... ...+..++.
T Consensus 98 g~L~LDEi~~l~~~~-q~~Ll~~l~ 121 (304)
T 1ojl_A 98 GTLFLDEIGDISPLM-QVRLLRAIQ 121 (304)
T ss_dssp SEEEEESCTTCCHHH-HHHHHHHHH
T ss_pred CEEEEeccccCCHHH-HHHHHHHHh
Confidence 589999999875432 233444444
No 330
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=21.38 E-value=2.7e+02 Score=21.08 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=29.7
Q ss_pred HHHHHHHHhhccCc-ceEEEecchhhHHHHHHHHhcCCCe
Q 023157 140 LETLCDLYETLAIT-QSVIFVNTRRKVDWLTDKMRSRDHT 178 (286)
Q Consensus 140 ~~~l~~~~~~~~~~-~~ivf~~~~~~~~~l~~~l~~~~~~ 178 (286)
...+..++...+.. ...|||.+...|..+.+.+++.|+.
T Consensus 187 ~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 187 LEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp HHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 56667777765532 7889999989999999999887753
No 331
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=21.31 E-value=65 Score=29.05 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=47.7
Q ss_pred cCcceEEEecchhhHHHHHHHHhc---CCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEec-----CCccCCC-CCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS---RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTD-----LLARGID-VQQV 221 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~Gid-i~~~ 221 (286)
.+.++++.+|++.-|...++.++. .|..+...+|+....++ ..+..+|+|+|+ .+..+.. +.++
T Consensus 74 ~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~ 146 (715)
T 2va8_A 74 NGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDA-------WLKNYDIIITTYEKLDSLWRHRPEWLNEV 146 (715)
T ss_dssp SCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCG-------GGGGCSEEEECHHHHHHHHHHCCGGGGGE
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchh-------hcCCCCEEEEcHHHHHHHHhCChhHhhcc
Confidence 357999999999998888887743 37789999998765442 123678999996 2222322 5566
Q ss_pred cEEEE
Q 023157 222 SLVIN 226 (286)
Q Consensus 222 ~~vi~ 226 (286)
++||+
T Consensus 147 ~~vIi 151 (715)
T 2va8_A 147 NYFVL 151 (715)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 77764
No 332
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=21.20 E-value=1.4e+02 Score=18.85 Aligned_cols=11 Identities=9% Similarity=0.075 Sum_probs=4.8
Q ss_pred CeeEEecCCCC
Q 023157 177 HTVSATHGDMD 187 (286)
Q Consensus 177 ~~~~~~~~~~~ 187 (286)
..+.++.-.++
T Consensus 50 ~dlvi~d~~~~ 60 (127)
T 2gkg_A 50 PDLVVLAVDLS 60 (127)
T ss_dssp CSEEEEESBCG
T ss_pred CCEEEEeCCCC
Confidence 34444444443
No 333
>1cmk_I CAMP-dependent protein kinase inhibitor, alpha form; phosphotransferase; HET: TPO SEP MYR; 2.90A {Homo sapiens}
Probab=21.19 E-value=26 Score=16.31 Aligned_cols=8 Identities=50% Similarity=0.812 Sum_probs=5.8
Q ss_pred hcccccCC
Q 023157 240 IGRSGRFG 247 (286)
Q Consensus 240 ~GR~~R~~ 247 (286)
.||+||.+
T Consensus 9 ~~RtGRRN 16 (26)
T 1cmk_I 9 SGRTGRRN 16 (26)
T ss_pred cCcccccc
Confidence 47888864
No 334
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=21.08 E-value=1.8e+02 Score=18.83 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=55.2
Q ss_pred ccchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc--CCCcEEEEec
Q 023157 133 VEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS--GSSRVLITTD 210 (286)
Q Consensus 133 ~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~ 210 (286)
+++.......+...+....+...+..+.+..++... +.+....+.++.-.++..+-.+.++.++. ....|++.|.
T Consensus 9 vdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~---~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~ 85 (133)
T 3b2n_A 9 AEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKL---IEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTT 85 (133)
T ss_dssp ECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHH---HHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEES
T ss_pred ECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHH---HhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEec
Confidence 444443555666666654333444455555544433 33334567777666654443444555443 3466777665
Q ss_pred CCcc-----CCCCCCCcEEEEccCCCCcchhhhhhccccc
Q 023157 211 LLAR-----GIDVQQVSLVINYDLPTQPENYLHRIGRSGR 245 (286)
Q Consensus 211 ~~~~-----Gidi~~~~~vi~~~~~~s~~~~~Q~~GR~~R 245 (286)
.... .+.. +++. .+..|.+..++.+++.++.+
T Consensus 86 ~~~~~~~~~~~~~-ga~~--~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 86 FKRPGYFEKAVVN-DVDA--YVLKERSIEELVETINKVNN 122 (133)
T ss_dssp CCCHHHHHHHHHT-TCSE--EEETTSCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHc-CCcE--EEECCCCHHHHHHHHHHHHc
Confidence 3321 1111 1222 23457777888777776654
No 335
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=20.85 E-value=2.9e+02 Score=21.30 Aligned_cols=37 Identities=8% Similarity=0.073 Sum_probs=24.7
Q ss_pred HHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeE
Q 023157 141 ETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVS 180 (286)
Q Consensus 141 ~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~ 180 (286)
.....++.. +...||+.+...+.-+.+.+++.|+.+.
T Consensus 172 ~~a~~ll~~---~~daI~~~~D~~a~Gv~~a~~e~Gv~vi 208 (296)
T 2hqb_A 172 ELFQELQKE---QVDVFYPAGDGYHVPVVEAIKDQGDFAI 208 (296)
T ss_dssp HHHHHHHTT---TCCEEECCCTTTHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHC---CCcEEEECCCCCCHHHHHHHHHcCCEEE
Confidence 444555542 4788999888888877777777664433
No 336
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=20.84 E-value=83 Score=21.60 Aligned_cols=48 Identities=10% Similarity=-0.027 Sum_probs=33.5
Q ss_pred cchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecC
Q 023157 160 NTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDL 211 (286)
Q Consensus 160 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 211 (286)
.|..++..+.+. .|+.+..+... +.+-+.++.+..++|+++.+|-|..
T Consensus 36 AT~gTa~~L~e~---~Gl~v~~v~k~-~~eG~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 36 ATGTTGRRIEEA---TGLTVEKLLSG-PLGGDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp ECHHHHHHHHHH---HCCCCEECSCG-GGTHHHHHHHHHHTTCEEEEEEECC
T ss_pred EccHHHHHHHHh---hCceEEEEEec-CCCCcchHHHHHHCCCccEEEEccC
Confidence 555666555442 57888777642 2234568999999999999998875
No 337
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=20.39 E-value=99 Score=27.22 Aligned_cols=14 Identities=7% Similarity=0.249 Sum_probs=11.4
Q ss_pred ccEEEEehhhHhhc
Q 023157 56 IKMFVLDEADEMLS 69 (286)
Q Consensus 56 ~~~iIiDE~h~~~~ 69 (286)
.+++|+||+|...+
T Consensus 274 ~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 274 FAMIYIEDCAFIPN 287 (592)
T ss_dssp CSEEEEETGGGCTT
T ss_pred cceEEEehhccCCc
Confidence 57999999997644
No 338
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=20.32 E-value=1.2e+02 Score=24.14 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=28.1
Q ss_pred cCcceEEEecchh-hHHHHHHHHhcCCC-eeEEecCCC
Q 023157 151 AITQSVIFVNTRR-KVDWLTDKMRSRDH-TVSATHGDM 186 (286)
Q Consensus 151 ~~~~~ivf~~~~~-~~~~l~~~l~~~~~-~~~~~~~~~ 186 (286)
+..+++|||.+-. .+..++..|+..|+ ++..+.|++
T Consensus 110 ~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 110 RDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp TTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 4568899998765 68888899999888 477777764
No 339
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=20.31 E-value=1.7e+02 Score=18.38 Aligned_cols=104 Identities=14% Similarity=0.110 Sum_probs=59.5
Q ss_pred cEEEEEeecChhHHHHHHHhcCCCeEEEecCCccccccceeEEEEccchhhHHHHHHHHHhhccCcceEEEecchhhHHH
Q 023157 88 QVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDW 167 (286)
Q Consensus 88 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~ 167 (286)
+++.+-.|-.+++..-++.-..+. ......+...+........+....+-.+++|..+...-..+
T Consensus 2 kililintnndelikkikkevenq---------------gyqvrdvndsdelkkemkklaeeknfekiliisndkqllke 66 (134)
T 2lci_A 2 KILILINTNNDELIKKIKKEVENQ---------------GYQVRDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKE 66 (134)
T ss_dssp CCEEEEECSCHHHHHHHHHHTTTT---------------TCEEEEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHH
T ss_pred eEEEEEcCCcHHHHHHHHHHHHcc---------------CeeeeecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHH
Confidence 356666776665555444332211 11222334444334444555555555688888888888888
Q ss_pred HHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEE
Q 023157 168 LTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVL 206 (286)
Q Consensus 168 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 206 (286)
+.+.++..|+.+..+-.+...++-.+--....+..+.|-
T Consensus 67 mlelisklgykvflllqdqdeneleefkrkiesqgyevr 105 (134)
T 2lci_A 67 MLELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVR 105 (134)
T ss_dssp HHHHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeee
Confidence 878888888888887777776654444444444333333
No 340
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=20.15 E-value=4.8e+02 Score=23.51 Aligned_cols=34 Identities=6% Similarity=0.086 Sum_probs=28.2
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHG 184 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~ 184 (286)
+...+.|.+.+..++..+.+.|.+.|+.+....+
T Consensus 350 ~~~diAIL~R~~~~~~~le~~L~~~gIPy~~~g~ 383 (724)
T 1pjr_A 350 RYRDFAVLYRTNAQSRVMEEMLLKANIPYQIVGG 383 (724)
T ss_dssp CGGGEEEEESSGGGHHHHHHHHHHTTCCEEEETS
T ss_pred ChhheeeeeecchhHHHHHHHHHHcCCCEEEeCC
Confidence 3457889999999999999999999988776654
No 341
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=20.12 E-value=2.8e+02 Score=21.82 Aligned_cols=63 Identities=5% Similarity=0.158 Sum_probs=42.5
Q ss_pred cceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhcCCCcEEEEecCCccCCCC
Q 023157 153 TQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDV 218 (286)
Q Consensus 153 ~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi 218 (286)
..++|-+.+...+........+.|.++..-..++++++... ++...+ +..++++.++ +.|+|+
T Consensus 89 aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~-L~~aa~-~~~~~~a~N~-SiGv~l 151 (288)
T 3ijp_A 89 TEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQ-IADFAK-YTTIVKSGNM-SLGVNL 151 (288)
T ss_dssp CSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHH-HHHHHT-TSEEEECSCC-CHHHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHH-HHHHhC-cCCEEEECCC-cHHHHH
Confidence 46777666667677777777788888888788888766544 444433 4777777654 566654
No 342
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=20.11 E-value=2.8e+02 Score=21.57 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=37.9
Q ss_pred CcceEEEecc--------------hhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhhc
Q 023157 152 ITQSVIFVNT--------------RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRS 200 (286)
Q Consensus 152 ~~~~ivf~~~--------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 200 (286)
.+-+|||.+. ...++.+.+.|+..|+.|. ++.+++.++-.+.++.|..
T Consensus 21 rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~ 82 (278)
T 3od5_A 21 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVST 82 (278)
T ss_dssp CCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHH
T ss_pred cCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 3567887764 3679999999999999876 5567888888888888854
No 343
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=20.07 E-value=1.5e+02 Score=22.82 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=28.9
Q ss_pred cCcceEEEecchhhHHHHHHHHhc-CCCe-eEEecCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRS-RDHT-VSATHGDM 186 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~-~~~~-~~~~~~~~ 186 (286)
+..++++||.+-..+...+..|.+ .|+. +..+.|++
T Consensus 225 ~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~ 262 (277)
T 3aay_A 225 NSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSW 262 (277)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHH
T ss_pred CCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchH
Confidence 456899999998888888888885 7884 78888874
No 344
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=20.03 E-value=63 Score=28.06 Aligned_cols=37 Identities=8% Similarity=0.052 Sum_probs=31.4
Q ss_pred cCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCC
Q 023157 151 AITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMD 187 (286)
Q Consensus 151 ~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 187 (286)
+..++++||.+-..+...+..|+..|+++..+.|++.
T Consensus 523 ~~~~iv~~c~~g~rs~~a~~~l~~~G~~v~~l~gG~~ 559 (565)
T 3ntd_A 523 KDKEIIIFSQVGLRGNVAYRQLVNNGYRARNLIGGYR 559 (565)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHTTCCEEEETTHHH
T ss_pred CcCeEEEEeCCchHHHHHHHHHHHcCCCEEEEcChHH
Confidence 3457999999988899999999999998888888754
No 345
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=20.03 E-value=2e+02 Score=18.96 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=30.3
Q ss_pred cCcceEEEecc------hhhHHHHHHHHhcCCCe---eEEecCCCCHHHHHHH
Q 023157 151 AITQSVIFVNT------RRKVDWLTDKMRSRDHT---VSATHGDMDQNTRDII 194 (286)
Q Consensus 151 ~~~~~ivf~~~------~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~ 194 (286)
..++++||..+ .-.|..+.+.|.+.|+. ...+.-....+.+...
T Consensus 14 ~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l 66 (121)
T 3gx8_A 14 ESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGI 66 (121)
T ss_dssp HSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHH
T ss_pred ccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHH
Confidence 34789999984 78899999999888876 4444444444444433
No 346
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=20.01 E-value=1.8e+02 Score=18.41 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=29.2
Q ss_pred cchhhHHHHHHHHHhhccCcceEEEecchhhHHHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHhh
Q 023157 134 EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFR 199 (286)
Q Consensus 134 ~~~~~~~~~l~~~~~~~~~~~~ivf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 199 (286)
++.......+...+.... .. +..+.+-.++ .+.+.+....+.++.-.++..+-.+.++.++
T Consensus 9 dd~~~~~~~l~~~L~~~g-~~-v~~~~~~~~a---l~~~~~~~~dlii~D~~~p~~~g~~~~~~lr 69 (120)
T 3f6p_A 9 DDEKPIADILEFNLRKEG-YE-VHCAHDGNEA---VEMVEELQPDLILLDIMLPNKDGVEVCREVR 69 (120)
T ss_dssp CSCHHHHHHHHHHHHHTT-CE-EEEESSHHHH---HHHHHTTCCSEEEEETTSTTTHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHhCC-EE-EEEeCCHHHH---HHHHhhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 333334444555554322 22 3334443333 3344455566666666666655555555554
Done!