BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023158
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NYU|A Chain A, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
In Complex With S-Adenosylmethionine
pdb|2NYU|B Chain B, Crystal Structure Of Human Ftsj Homolog 2 (E.Coli) Protein
In Complex With S-Adenosylmethionine
Length = 196
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 94/191 (49%), Gaps = 27/191 (14%)
Query: 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------------PMAPIEGVIQV 68
+R+RSAFKLL+++E I RV+D AAPG+WSQ P +P+ V+ V
Sbjct: 2 YRSRSAFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGV 61
Query: 69 Q---------------GDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQS 113
D+T+ RT++ ++ G +AD+++ D AP+ TG D+D
Sbjct: 62 DLLHIFPLEGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLI 121
Query: 114 QLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 173
L L L+V +L+ GG F+ K + G + L +L F V KP++SR S E +
Sbjct: 122 SLCLTLLSVTPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVY 181
Query: 174 AVCENYFPPEG 184
+ Y +G
Sbjct: 182 FLATQYHGRKG 192
>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine
pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine, Mercury Derivative
Length = 180
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------------------PMAP 61
G R+R+ FKL +I + +F+ VVDL AAPG WSQ PM P
Sbjct: 1 GLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP 60
Query: 62 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLT 121
I GV +QGD + + ++ K +V+ D AP+++G +D L+ L
Sbjct: 61 IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALE 120
Query: 122 VVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFP 181
+ VL GG F+ K+F+G+ +++ F V KP SSR S E + V P
Sbjct: 121 MCRDVLAPGGSFVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP 180
>pdb|2PLW|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltransferase,
Putative, From Plasmodium Falciparum (Pf13_0052)
Length = 201
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 36/197 (18%)
Query: 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQP-------------------MA 60
+R+R+A+KL+++D ++ + K ++D+ PGSW Q M
Sbjct: 1 NYRSRAAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD 60
Query: 61 PIEGVIQVQGDITNARTAEVV-IRHFDGC----------------KADLVVCDGAPDVTG 103
PI V +QG+I + I + D K D+++ D A G
Sbjct: 61 PIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIG 120
Query: 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPK 163
D +L L+ + + GG +I K++ G T+ L LK F +V KPK
Sbjct: 121 NKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLKTYLKGMFQLVHTTKPK 180
Query: 164 SSRNSSIEAFAVCENYF 180
+SRN S E + VC+N+
Sbjct: 181 ASRNESREIYLVCKNFL 197
>pdb|3DOU|A Chain A, Crystal Structure Of Methyltransferase Involved In Cell
Division From Thermoplasma Volcanicum Gss1
Length = 191
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
Query: 22 RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAP---------------IEGVI 66
R+R+AFKL + + + + V+++ ++PG W+Q + I GV
Sbjct: 6 RSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEXEEIAGVR 65
Query: 67 QVQGDITNARTAEVVIRHF--DGC-KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVV 123
++ DI + + R +G K D VV D V+G+ D V Q+ +
Sbjct: 66 FIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAXAKVSGIPSRDHAVSYQIGQRVXEIA 125
Query: 124 THVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 173
L+ GG + K F+G T+ + F +KP +SR SS E +
Sbjct: 126 VRYLRNGGNVLLKQFQGDXTNDFIAIWRKNFSSYKISKPPASRGSSSEIY 175
>pdb|4GB3|1 Chain 1, Human Coxsackievirus B3 Strain Rd Coat Protein
Length = 281
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 150 LKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGEDQDCS 209
L+L F + + +P +++N + Y PP G P +KV S + S
Sbjct: 114 LELTFVITSTQQPSTTQNQDAQILTHQIMYVPPGGPVP-------DKVDSYVWQTSTNPS 166
Query: 210 SGWLEG--PNKVYIPFLACGDL--NGYD 233
W EG P ++ IPFL+ G+ N YD
Sbjct: 167 VFWTEGNAPPRMSIPFLSIGNAYSNFYD 194
>pdb|1COV|1 Chain 1, Coxsackievirus B3 Coat Protein
pdb|1JEW|1 Chain 1, Cryo-Em Structure Of Coxsackievirus B3(M Strain) With Its
Cellular Receptor, Coxsackievirus And Adenovirus
Receptor (Car)
Length = 281
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 150 LKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGEDQDCS 209
L+L F + + +P +++N + Y PP G P +KV S + S
Sbjct: 114 LELTFVITSTQQPSTTQNQDAQILTHQIMYVPPGGPVP-------DKVDSYVWQTSTNPS 166
Query: 210 SGWLEG--PNKVYIPFLACGDL--NGYD 233
W EG P ++ +PFL+ G+ N YD
Sbjct: 167 VFWTEGNAPPRMSVPFLSIGNAYSNFYD 194
>pdb|3K1L|B Chain B, Crystal Structure Of Fancl
pdb|3K1L|A Chain A, Crystal Structure Of Fancl
Length = 381
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 18 EEGWRARSAFK--LLQIDEEFNIFEGVKRVVDLCAAPG-SWSQPMAPIEGVIQVQGDITN 74
EE R R L D E NI + + R+ DLC P WS +G + D
Sbjct: 255 EEVARLRHVLSDGLSNWDSEMNIHKNLLRMFDLCYFPMPDWS------DGPKLDEEDNEE 308
Query: 75 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLH 105
R DG + LV CD A V H
Sbjct: 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCH 339
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 16/109 (14%)
Query: 122 VVTHVLKEGGKFIAKIFRGKDTS-LLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYF 180
V++++KE K I K + LY + K FFP N+++E F +Y+
Sbjct: 54 TVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFP-----------NNAVEYFVSYYDYY 102
Query: 181 PPEGFNPKDLHRLLEKVGSPWGGEDQ---DCSSGWLEGPNKVYIPFLAC 226
PE + P+ +EK S D+ +S E + + I ++C
Sbjct: 103 QPEAYVPQ-TDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSC 150
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 16/109 (14%)
Query: 122 VVTHVLKEGGKFIAKIFRGKDTS-LLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYF 180
V++++KE K I K + LY + K FFP N+++E F +Y+
Sbjct: 48 TVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEFFP-----------NNAVEYFVSYYDYY 96
Query: 181 PPEGFNPKDLHRLLEKVGSPWGGEDQ---DCSSGWLEGPNKVYIPFLAC 226
PE + P+ +EK S D+ +S E + + I ++C
Sbjct: 97 QPEAYVPQ-TDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSC 144
>pdb|2GTL|N Chain N, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 220
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 88 CKADLVVCDGAPDVTGLHDMD-EFVQSQLILAG 119
C +DL+VCDG D HD D + + ++ AG
Sbjct: 67 CISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAG 99
>pdb|1YCD|A Chain A, Crystal Structure Of Yeast Fsh1/yhr049w, A Member Of The
Serine Hydrolase Family
pdb|1YCD|B Chain B, Crystal Structure Of Yeast Fsh1/yhr049w, A Member Of The
Serine Hydrolase Family
Length = 243
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 7 DKRDIYYRKAKEEGWRA-------RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPM 59
+K+D+ + + +E W+A R+ F +I E +I EG+K VVD A G + +
Sbjct: 49 EKKDLPF-EMDDEKWQATLDADVNRAWFYHSEISHELDISEGLKSVVDHIKANGPYDGIV 107
Query: 60 APIEGVIQVQGDITNARTAEVVIRH 84
+G + ITN + +E+V H
Sbjct: 108 GLSQGA-ALSSIITN-KISELVPDH 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,232,625
Number of Sequences: 62578
Number of extensions: 399822
Number of successful extensions: 952
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 14
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)