BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023158
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UET6|TRM7_HUMAN Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Homo sapiens GN=FTSJ1 PE=1 SV=2
Length = 329
Score = 317 bits (811), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 166/290 (57%), Positives = 204/290 (70%), Gaps = 28/290 (9%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ--- 57
MG+ S+DKRD+YYR AKE GWRARSAFKLLQ+D+EF +F+GV R VDLCAAPGSWSQ
Sbjct: 1 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDKEFQLFQGVTRAVDLCAAPGSWSQVLS 60
Query: 58 -----------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPD 100
MAP+ GV+Q+QGDIT TA+ +I+HF GC ADLVVCDGAPD
Sbjct: 61 QKIGGQGSGHVVAVDLQAMAPLPGVVQIQGDITQLSTAKEIIQHFKGCPADLVVCDGAPD 120
Query: 101 VTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFA 160
VTGLHD+DE++Q+QL+LA L + THVLK GG F+AKIFRG+D +LLY QL++FF V A
Sbjct: 121 VTGLHDVDEYMQAQLLLAALNIATHVLKPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCA 180
Query: 161 KPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGEDQDCSSGWLEGPNKVY 220
KP+SSRNSSIEAFAVC+ Y PPEGF P DL + P D L+GP ++
Sbjct: 181 KPRSSRNSSIEAFAVCQGYDPPEGFIP-DLSK-------PLLDHSYDPDFNQLDGPTRII 232
Query: 221 IPFLACGDLNGYDSDRSYPLPKVADGTYQSLDPVQPPIAPPYKRALEMKK 270
+PF+ CGDL+ YDSDRSYPL Y+ P QPPI+PPY+ A +K+
Sbjct: 233 VPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPPISPPYQEACTLKR 282
>sp|Q22031|TRM7_CAEEL Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Caenorhabditis elegans GN=R74.7 PE=3 SV=3
Length = 337
Score = 301 bits (770), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 158/303 (52%), Positives = 195/303 (64%), Gaps = 45/303 (14%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ--- 57
MGK SRDKRDIYYR AKE WRARSAFKL+QID+EF I +GV+R VDLCAAPGSWSQ
Sbjct: 1 MGKTSRDKRDIYYRLAKENKWRARSAFKLMQIDDEFQILKGVRRAVDLCAAPGSWSQVLS 60
Query: 58 ------------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 99
PMAPI GVIQ+QGDIT+ TA VI+HF G K+D+V+CDGAP
Sbjct: 61 KRLYEEDQEAKIVAIDLQPMAPIPGVIQLQGDITSVDTANQVIKHFSGEKSDIVICDGAP 120
Query: 100 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTF 159
DVTG+H +DEF+Q++LILA + +HVLKEGG F+AKIFR +++SLLY Q+K +F V
Sbjct: 121 DVTGIHSLDEFMQAELILAAFNITSHVLKEGGNFLAKIFRSRNSSLLYAQMKKYFKKVYL 180
Query: 160 AKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGEDQDCSSGWLEGPNKV 219
AKP+SSR SS EAF +C +Y PPEGF P G D + P+ +
Sbjct: 181 AKPRSSRQSSCEAFVLCLDYSPPEGFVP------------TMGKTSLDATDASAISPD-I 227
Query: 220 YIPFLACGDLNGYDSDRSYPL------PK-----VADGTYQSLDPVQPPIAPPYKRALEM 268
F+ CGDL+G+DS++SYPL PK Y+ D VQPP P YK AL+
Sbjct: 228 IDGFVTCGDLSGWDSEKSYPLDIDACFPKGEIDEEQKKRYEFKDVVQPPTDPAYKAALDK 287
Query: 269 KKA 271
KK+
Sbjct: 288 KKS 290
>sp|O36015|TRM7_SCHPO Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC4F10.03c PE=3 SV=1
Length = 285
Score = 299 bits (765), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/299 (51%), Positives = 196/299 (65%), Gaps = 46/299 (15%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWS---- 56
MG++S+DKRD YYR AKE+GWRARSAFKLLQ++E+FN+FEG KRVVDLCAAPGSWS
Sbjct: 1 MGRSSKDKRDAYYRLAKEQGWRARSAFKLLQLNEQFNLFEGAKRVVDLCAAPGSWSQVLS 60
Query: 57 ------------------------QPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 92
QPMAPI+GV +Q DIT+ T +++ HF ADL
Sbjct: 61 RELLKNIDTSIAADEKPMIVAVDLQPMAPIDGVCTLQLDITHPNTLSIILSHFGNEPADL 120
Query: 93 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 152
VV DGAPDVTGLHD+DE++Q+Q++LA + VLK GGKF+AKIFRG+D SLLY QL+L
Sbjct: 121 VVSDGAPDVTGLHDLDEYIQAQILLAAFNLAVCVLKPGGKFVAKIFRGRDVSLLYSQLRL 180
Query: 153 FFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGEDQDCSSGW 212
F V+ AKP+SSR SSIE+F VCE++ PP F P DL + L + E
Sbjct: 181 MFRKVSCAKPRSSRASSIESFVVCEDFNPPSNFQP-DLTKPLCVIDPTNAHE-------- 231
Query: 213 LEGPNKVYIPFLACGDLNGYDSDRSYPLPKVADGTYQSLDPVQPPIAPPYKRALEMKKA 271
PF+ACGDL+GYD+D +YP+ + +LD +QPP APPYKRA+E+K +
Sbjct: 232 -------IAPFIACGDLDGYDADATYPVE--INMKKATLDVIQPPTAPPYKRAIELKHS 281
>sp|Q54VA8|TRM7_DICDI Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Dictyostelium discoideum GN=fsjA PE=3 SV=1
Length = 270
Score = 276 bits (707), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 141/267 (52%), Positives = 177/267 (66%), Gaps = 35/267 (13%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ--- 57
MGK+S+DKRDIYYRKAKEEGWRARSAFKL+QIDEE+ IFEGVKRVVDLCAAPGSWSQ
Sbjct: 1 MGKSSKDKRDIYYRKAKEEGWRARSAFKLIQIDEEYQIFEGVKRVVDLCAAPGSWSQVLS 60
Query: 58 --------------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 97
MAP++GV+Q++GDIT T++ +I HFDG ADL++ DG
Sbjct: 61 RRIYGDGKDPDVKIVAVDLQEMAPLKGVVQIKGDITKYETSKQIISHFDGSLADLIISDG 120
Query: 98 APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVV 157
APDVTGLHD+D + QSQLIL+ L + TH LK GG F+AK+F+G D SL+Y Q+KLFF V
Sbjct: 121 APDVTGLHDIDFYGQSQLILSALNITTHTLKIGGTFVAKMFKGDDMSLMYSQMKLFFEHV 180
Query: 158 TFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGEDQDCSSGWLEG-- 215
+F KP SSR SS+E F +C NY PP +NPK + LE + + ++
Sbjct: 181 SFVKPSSSRESSLENFILCRNYQPPLNYNPKIIDPALENHNKILNNNNNNSNNNNNCNID 240
Query: 216 ---------PNKVYIPFLACGDLN-GY 232
+ + +PF+ACGDLN GY
Sbjct: 241 NENDNEFLKTDSLIVPFIACGDLNLGY 267
>sp|P38238|TRM7_YEAST tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TRM7 PE=1 SV=1
Length = 310
Score = 265 bits (678), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 190/304 (62%), Gaps = 34/304 (11%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFE--GVKRVVDLCAAPGSWSQ- 57
MGK+S+DKRD+YYRKAKE+G+RARSAFKLLQ++++F+ + +KRVVDLCAAPGSWSQ
Sbjct: 1 MGKSSKDKRDLYYRKAKEQGYRARSAFKLLQLNDQFHFLDDPNLKRVVDLCAAPGSWSQV 60
Query: 58 -------------------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 92
PM+PI V +Q DIT+ +T +++ F KAD
Sbjct: 61 LSRKLFDESPSSDKEDRKIVSVDLQPMSPIPHVTTLQADITHPKTLARILKLFGNEKADF 120
Query: 93 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 152
V DGAPDVTGLHD+DE+VQ QLI++ L + +LK+GG F+AKIFRG+D +LY QL
Sbjct: 121 VCSDGAPDVTGLHDLDEYVQQQLIMSALQLTACILKKGGTFVAKIFRGRDIDMLYSQLGY 180
Query: 153 FFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK-DLHRLLEKVGSPWGGED---QDC 208
F + AKP+SSR +S+EAF VC Y PP + PK D++ +++ D
Sbjct: 181 LFDKIVCAKPRSSRGTSLEAFIVCLGYNPPSNWTPKLDVNTSVDEFFQGCFLNKLCISDK 240
Query: 209 SSGWLEGPNKVYIPFLACGDLNGYDSDRSY-PLPKVADGTYQSLDPVQPPIAPPYKRALE 267
S W E + F+ACG L +DSD +Y LP GT SLDPVQ P PPYK+ALE
Sbjct: 241 LSHWNEEERNI-AEFMACGSLQSFDSDATYHDLPSSVAGTSSSLDPVQSPTNPPYKKALE 299
Query: 268 MKKA 271
+K++
Sbjct: 300 LKRS 303
>sp|Q9VEP1|TRM71_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 1
OS=Drosophila melanogaster GN=CG5220 PE=2 SV=1
Length = 302
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 145/317 (45%), Positives = 188/317 (59%), Gaps = 52/317 (16%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ--- 57
MGK S+DKRDIYYR+AK+EGWRARSAFKLL +DE + I GV+R VDLCAAPGSWSQ
Sbjct: 1 MGKTSKDKRDIYYRQAKDEGWRARSAFKLLHVDEAYGILNGVQRAVDLCAAPGSWSQVLS 60
Query: 58 ------------------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGC-KADL 92
MAPI G++Q+QGDIT TAE +I HF G KA L
Sbjct: 61 RKLYDTCETDDEKSAVKIIAVDLQAMAPIRGILQLQGDITKQSTAEAIIGHFGGNEKAQL 120
Query: 93 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 152
VVCDGAPDVTG+H+MDE++Q QL++A L++ T VL+ GG F+AKIF+G TSLL Q+++
Sbjct: 121 VVCDGAPDVTGVHEMDEYMQHQLLVAALSIATCVLETGGTFVAKIFKGNATSLLSSQMQI 180
Query: 153 FFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPK-------DLHRLLEKVGSPWGGED 205
FF KP SSR SSIEAF VC ++ PEG+ P+ D+ L +K GS
Sbjct: 181 FFKKFDIYKPPSSRPSSIEAFVVCSDFCLPEGYIPQVINPARDDIRLLAQKTGSEV---- 236
Query: 206 QDCSSGWLEGPNKVYIPFLACGDLNGYDSDRSYPLPKVADGTYQSLDPVQPPIAPPYKRA 265
N+ +PF+ACGDLNG SD +D + +L+ V +
Sbjct: 237 -----------NRRLVPFIACGDLNGL-SDPEEGKTSSSDESKSNLEYVYDAVMDDASYP 284
Query: 266 LEMKKASSQGIREPEKH 282
LE K+ Q + + ++H
Sbjct: 285 LEFKEILKQ-VYDEQRH 300
>sp|Q9VDD9|TRM72_DROME Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase 2
OS=Drosophila melanogaster GN=CG7009 PE=3 SV=1
Length = 320
Score = 244 bits (624), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 136/294 (46%), Positives = 174/294 (59%), Gaps = 41/294 (13%)
Query: 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQP-- 58
MG+ S+DKRDI+YR AKE+GWRARSAFKLLQ DE F + EG+ R VDLCAAPGSWSQ
Sbjct: 1 MGRTSKDKRDIFYRLAKEQGWRARSAFKLLQADETFQLLEGLTRAVDLCAAPGSWSQVLA 60
Query: 59 ------------------------MAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 94
MAPIEGV Q++ DI+ TAE +I F G KA +VV
Sbjct: 61 KRLYEPLPPEEREKVKIIAVDLQGMAPIEGVKQLRADISKESTAEAIIEFFGGEKAQIVV 120
Query: 95 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFF 154
DGAPD TG+HD D +VQ +L+L+ L++ T +L+EGG F++KI+R TS LY QLK FF
Sbjct: 121 SDGAPDSTGMHDFDSYVQGELLLSALSISTFILEEGGSFVSKIYRADRTSRLYTQLKRFF 180
Query: 155 PVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGEDQDCSSGWLE 214
V KP +SRNSSIEAF V + P+G+ P +L W G + E
Sbjct: 181 KNVCVFKPSASRNSSIEAFVVAREFCLPDGYKPCNLTTEWHDQPESWVGRKK-------E 233
Query: 215 GPNKVYIPFLAC-GDLNGYDSDRSYPLPKVADGTYQSLDPVQPPIAPPYKRALE 267
P V +PF+A G+L DSDR+Y L + Y +PVQ P+ Y+ L+
Sbjct: 234 SPPVVQVPFVAYKGEL---DSDRTYDLGE----NYVYKEPVQQPLTAAYQDILQ 280
>sp|Q5BH88|SPB1_EMENI AdoMet-dependent rRNA methyltransferase spb1 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=spb1 PE=3 SV=1
Length = 806
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 108/197 (54%), Gaps = 18/197 (9%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------------ 57
D +YR AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW Q
Sbjct: 13 DKWYRLAKEKGYRARAAFKLVQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPAQSLI 72
Query: 58 ------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFV 111
P+ PI VI Q DIT + + H KAD V+ DGAP+V D F
Sbjct: 73 VGVDLAPIKPIPRVITFQQDITTEKCRATIRSHLKHWKADTVLHDGAPNVGTAWVQDAFS 132
Query: 112 QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIE 171
Q++L+L L + T L EGG F+ K+FR KD + L K F V KP SSRN S E
Sbjct: 133 QAELVLESLKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFMSVEATKPPSSRNVSAE 192
Query: 172 AFAVCENYFPPEGFNPK 188
F VC Y P+ +PK
Sbjct: 193 IFVVCRGYKAPKRIDPK 209
>sp|Q4WVH3|SPB1_ASPFU AdoMet-dependent rRNA methyltransferase spb1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=spb1 PE=3 SV=1
Length = 795
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 109/197 (55%), Gaps = 18/197 (9%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------------ 57
D +YR AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW Q
Sbjct: 13 DKWYRLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAECMPTQSII 72
Query: 58 ------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFV 111
P+ PI VI Q DIT + + +H KAD V+ DGAP+V D F
Sbjct: 73 IGVDLAPIKPIPRVITFQSDITTEKCRATIRQHLKHWKADTVLHDGAPNVGTAWVQDAFS 132
Query: 112 QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIE 171
Q++L+L + + T L EGG F+ K+FR KD + L K F V KP SSRN S E
Sbjct: 133 QAELVLQSMKLATEFLVEGGTFVTKVFRSKDYNPLLWVFKQLFTSVEATKPPSSRNVSAE 192
Query: 172 AFAVCENYFPPEGFNPK 188
F VC + P+ +PK
Sbjct: 193 IFVVCRGFKAPKRIDPK 209
>sp|Q9P6V8|SPB1_NEUCR AdoMet-dependent rRNA methyltransferase spb1 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=spb1 PE=3 SV=2
Length = 831
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/269 (34%), Positives = 130/269 (48%), Gaps = 38/269 (14%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------------ 57
D +Y+ AKE+G+RAR+AFKL+Q+++++ E K +DLCAAPGSW Q
Sbjct: 13 DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVALDLCAAPGSWCQVCAETMPTNSII 72
Query: 58 ------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFV 111
P+ PI VI Q DIT + + H KAD+V+ DGAP+V D +
Sbjct: 73 IGVDLAPIKPIPKVITFQSDITTEKCRATIRSHLKTWKADVVLHDGAPNVGTAWVQDSYN 132
Query: 112 QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIE 171
Q++L L L + T L EGG F+ K+FR KD + L F V KP SSRN S E
Sbjct: 133 QAELALHSLKLATEFLIEGGTFVTKVFRSKDYNSLLWVCNQLFAKVEATKPPSSRNVSAE 192
Query: 172 AFAVCENYFPPEGFNPK--DLHRLLEKVGSPWGGEDQDCSSGWLEGPN---KVYIPFLAC 226
F VC + P+ +PK D + E V P PN KVY P +
Sbjct: 193 IFVVCRGFKAPKRIDPKLLDPRSVFEDVAGP--------------APNNEAKVYNPEVKK 238
Query: 227 GDLNGYDSDRSYPLPKVADGTY-QSLDPV 254
GY+ +++ + ++DP+
Sbjct: 239 RKREGYEEGDYTQFKEISASEFINTVDPI 267
>sp|Q6C9Q1|SPB1_YARLI AdoMet-dependent rRNA methyltransferase SPB1 OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=SPB1 PE=3 SV=1
Length = 850
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 114/207 (55%), Gaps = 19/207 (9%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQ---- 57
K + + D YYR AKE+G+RARS+FK++QI++++ F E K V+DLCAAPGSW Q
Sbjct: 7 KHGKGRLDHYYRLAKEKGYRARSSFKIIQINQKYGKFLEKSKVVIDLCAAPGSWCQVASQ 66
Query: 58 --------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG 103
P+ P+ VI Q DIT + + ++ KAD V+ DGAP+V
Sbjct: 67 LCPVNSLIIGCDIVPIKPLPNVITFQSDITTDHCRQQLRQYMKTWKADTVMHDGAPNVGM 126
Query: 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPK 163
D F QS+L+L L + L +GG F+ K+FR KD + L + FF V KP
Sbjct: 127 AWAQDAFTQSELVLQSLKLAVEFLNKGGTFVTKVFRSKDYNNLMWVFQQFFEKVEATKPP 186
Query: 164 SSRNSSIEAFAVCENYFPPEGFNPKDL 190
SSRN S E F VC + P+ +P+ L
Sbjct: 187 SSRNVSAEIFVVCLKFKAPKKIDPRLL 213
>sp|Q52C47|SPB1_MAGO7 AdoMet-dependent rRNA methyltransferase SPB1 OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=SPB1 PE=3
SV=2
Length = 865
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 107/197 (54%), Gaps = 18/197 (9%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------------ 57
D +Y+ AKE+G+RAR+AFKL+Q+++++ E K ++DLCAAPGSW Q
Sbjct: 13 DKWYKLAKEKGYRARAAFKLIQLNKKYGFLEKSKVLLDLCAAPGSWCQVAAEVMPVSSLI 72
Query: 58 ------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFV 111
P+ PI VI Q DIT + + +H KAD V+ DGAP+V D F
Sbjct: 73 VGVDLAPIKPIPKVITFQSDITTEKCRATIRQHLKTWKADTVLHDGAPNVGTAWVQDSFN 132
Query: 112 QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIE 171
Q++L L + + T L EGG F+ K+FR KD + + F V KP SSRN S E
Sbjct: 133 QAELTLQAMKLATEFLVEGGTFVTKVFRSKDYNSMLWVFNQLFKKVEATKPPSSRNVSAE 192
Query: 172 AFAVCENYFPPEGFNPK 188
F VC + P+ +PK
Sbjct: 193 IFVVCRGFKAPKRIDPK 209
>sp|Q59KF3|SPB1_CANAL AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=SPB1 PE=3 SV=1
Length = 845
Score = 141 bits (355), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 122/237 (51%), Gaps = 23/237 (9%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQ---- 57
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW Q
Sbjct: 7 KHSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQ 66
Query: 58 --------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG 103
P+ P+ VI Q DIT + H KAD V+ DGAP+V
Sbjct: 67 LCPINSLIIGVDIVPIKPLPNVITFQSDITTEDCRSRLRGHMKTWKADTVLHDGAPNVGL 126
Query: 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPK 163
D F QSQL L L + L GG F+ KIFR +D + L + F V KP
Sbjct: 127 GWVQDAFTQSQLTLQALKLAVENLTAGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPP 186
Query: 164 SSRNSSIEAFAVCENYFPPEGFNPK--DLHRLLEKVGSPWGGEDQDCSSGWLEGPNK 218
+SRN S E F VC+ + P+ +P+ D + E++G G E + + + P K
Sbjct: 187 ASRNVSAEIFVVCKGFKAPKKLDPRLLDPKEVFEELGG--GNESKQNNEAKIFNPEK 241
>sp|Q5ZKM1|SPB1_CHICK pre-rRNA processing protein FTSJ3 OS=Gallus gallus GN=FTSJ3 PE=2
SV=2
Length = 832
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 128/252 (50%), Gaps = 29/252 (11%)
Query: 1 MGKASR---DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ 57
MGK S+ +RD +Y AKE G+R+RSAFKLLQ++ +F + + ++DLCAAPG W Q
Sbjct: 1 MGKKSKVGKSRRDKFYHLAKETGFRSRSAFKLLQLNRKFQFLQKARALLDLCAAPGGWLQ 60
Query: 58 ------------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 99
P+ PI V+ +Q DIT + + + + K D+V+ DGAP
Sbjct: 61 VASKFMPVSSLVIGVDLVPIKPIPNVVTLQEDITTEKCRQALRKELQTWKVDVVLNDGAP 120
Query: 100 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTF 159
+V D + Q+ L L L + L +GG FI K+FR +D L + FF V
Sbjct: 121 NVGASWVHDAYSQANLTLMALKLACEFLCKGGWFITKVFRSRDYQPLLWIFQQFFHKVQA 180
Query: 160 AKPKSSRNSSIEAFAVCENYFPPEG-----FNPKDLHRLLE---KVGSPWGGEDQDCSSG 211
KP++SRN S E F VC+ Y P+ F+PK + +E K S + + + G
Sbjct: 181 TKPQASRNESAEIFVVCQGYQAPDKIDSKFFDPKYAFKEVEVHAKSVSELVSKKKPKAEG 240
Query: 212 WLEGPNKVYIPF 223
+ +G +Y F
Sbjct: 241 YADGDTTLYHRF 252
>sp|P0CS78|SPB1_CRYNJ AdoMet-dependent rRNA methyltransferase SPB1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=SPB1 PE=3 SV=1
Length = 908
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 18/206 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ----- 57
K + + D +YR AKE+G+RARSAFKL+ ++ ++++ + +DLCAAPG W Q
Sbjct: 7 KTGKGRLDKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEKY 66
Query: 58 -------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL 104
+ P+ V DIT + + +H KADLV+ DGAP+V
Sbjct: 67 MPKGSLIIGVDLNAIKPLPHVTTFVADITTPHCRQTLRQHMHDWKADLVLHDGAPNVGSA 126
Query: 105 HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKS 164
D F Q++L+L L + T L +GG F+ K+FR +D + L F V KP S
Sbjct: 127 WVQDAFTQNELVLQSLKLATEFLAKGGSFVTKVFRSQDYNSLLWVFGQLFKSVEATKPPS 186
Query: 165 SRNSSIEAFAVCENYFPPEGFNPKDL 190
SRN S E F VC ++ P+ +PK L
Sbjct: 187 SRNVSAEIFVVCRDFIAPKHIDPKFL 212
>sp|P0CS79|SPB1_CRYNB AdoMet-dependent rRNA methyltransferase SPB1 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=SPB1 PE=3 SV=1
Length = 908
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/206 (35%), Positives = 108/206 (52%), Gaps = 18/206 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ----- 57
K + + D +YR AKE+G+RARSAFKL+ ++ ++++ + +DLCAAPG W Q
Sbjct: 7 KTGKGRLDKFYRLAKEQGYRARSAFKLVHLNRKYDLLSKARCCIDLCAAPGGWLQVAEKY 66
Query: 58 -------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL 104
+ P+ V DIT + + +H KADLV+ DGAP+V
Sbjct: 67 MPKGSLIIGVDLNAIKPLPHVTTFVADITTPHCRQTLRQHMHDWKADLVLHDGAPNVGSA 126
Query: 105 HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKS 164
D F Q++L+L L + T L +GG F+ K+FR +D + L F V KP S
Sbjct: 127 WVQDAFTQNELVLQSLKLATEFLAKGGSFVTKVFRSQDYNSLLWVFGQLFKSVEATKPPS 186
Query: 165 SRNSSIEAFAVCENYFPPEGFNPKDL 190
SRN S E F VC ++ P+ +PK L
Sbjct: 187 SRNVSAEIFVVCRDFIAPKHIDPKFL 212
>sp|Q5RAS1|SPB1_PONAB pre-rRNA processing protein FTSJ3 OS=Pongo abelii GN=FTSJ3 PE=2
SV=1
Length = 841
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 106/205 (51%), Gaps = 18/205 (8%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ---- 57
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W Q
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAK 64
Query: 58 --------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG 103
P+ P+ V+ +Q DIT R + + + K D+V+ DGAP+V
Sbjct: 65 FMPVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGAPNVGA 124
Query: 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPK 163
D + Q+ L L L + L GG FI K+FR +D L + F V KP+
Sbjct: 125 SWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQ 184
Query: 164 SSRNSSIEAFAVCENYFPPEGFNPK 188
+SR+ S E F VC+ + P+ + K
Sbjct: 185 ASRHESAEIFVVCQGFLAPDKVDSK 209
>sp|Q751U1|SPB1_ASHGO AdoMet-dependent rRNA methyltransferase SPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SPB1 PE=3 SV=2
Length = 830
Score = 138 bits (347), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 109/207 (52%), Gaps = 19/207 (9%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQ---- 57
K S+ + D YY AKE+G+RARS+FK++QI+E+F F E K V+DLCAAPGSW Q
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVASN 66
Query: 58 --------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG 103
PM P+ VI Q DIT + + KAD V+ DGAP+V
Sbjct: 67 LCPVNSLIIGVDIVPMQPMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGAPNVGL 126
Query: 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPK 163
D F QS L L L + L GG F+ KIFR KD + L + F V KP
Sbjct: 127 NWVQDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLMWVFQQLFDKVEATKPP 186
Query: 164 SSRNSSIEAFAVCENYFPPEGFNPKDL 190
+SRN S E F VC+ + P+ +P+ L
Sbjct: 187 ASRNVSAEIFVVCKGFKAPKKLDPRLL 213
>sp|Q8IY81|SPB1_HUMAN pre-rRNA processing protein FTSJ3 OS=Homo sapiens GN=FTSJ3 PE=1
SV=2
Length = 847
Score = 138 bits (347), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 106/205 (51%), Gaps = 18/205 (8%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ---- 57
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W Q
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAK 64
Query: 58 --------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG 103
P+ P+ V+ +Q DIT R + + + K D+V+ DGAP+V
Sbjct: 65 FMPVSSLIVGVDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVDVVLNDGAPNVGA 124
Query: 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPK 163
D + Q+ L L L + L GG FI K+FR +D L + F V KP+
Sbjct: 125 SWVHDAYSQAHLTLMALRLACDFLARGGSFITKVFRSRDYQPLLWIFQQLFRRVQATKPQ 184
Query: 164 SSRNSSIEAFAVCENYFPPEGFNPK 188
+SR+ S E F VC+ + P+ + K
Sbjct: 185 ASRHESAEIFVVCQGFLAPDKVDSK 209
>sp|Q6CV12|SPB1_KLULA AdoMet-dependent rRNA methyltransferase SPB1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SPB1 PE=3 SV=1
Length = 833
Score = 137 bits (346), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 109/207 (52%), Gaps = 19/207 (9%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQ---- 57
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW Q
Sbjct: 8 KNSKGRLDKYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASN 67
Query: 58 --------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG 103
PM + VI Q DIT + + KAD V+ DGAP+V
Sbjct: 68 LCPVNSLIIGVDIVPMKTMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGAPNVGL 127
Query: 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPK 163
D F QS L L L + L GG F+ KIFR KD + L + F V KP
Sbjct: 128 SWAQDAFTQSHLTLQALKLAVENLVVGGTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPP 187
Query: 164 SSRNSSIEAFAVCENYFPPEGFNPKDL 190
+SRN S E F VC+N+ P+ +P+ L
Sbjct: 188 ASRNVSAEIFVVCKNFKAPKKLDPRLL 214
>sp|Q5RJT2|SPB1_RAT pre-rRNA processing protein FTSJ3 OS=Rattus norvegicus GN=Ftsj3
PE=2 SV=1
Length = 829
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 106/205 (51%), Gaps = 18/205 (8%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ---- 57
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W Q
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAK 64
Query: 58 --------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG 103
P+ P+ V+ +Q DIT R + + + K D+V+ DGAP+V
Sbjct: 65 FMPVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGAPNVGA 124
Query: 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPK 163
D + Q+ L L L + L GG FI K+FR +D L + F V KP+
Sbjct: 125 SWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFHRVQATKPQ 184
Query: 164 SSRNSSIEAFAVCENYFPPEGFNPK 188
+SR+ S E F VC+ + P+ + K
Sbjct: 185 ASRHESAEIFVVCQGFLAPDKVDAK 209
>sp|Q9DBE9|SPB1_MOUSE pre-rRNA processing protein FTSJ3 OS=Mus musculus GN=Ftsj3 PE=1
SV=1
Length = 838
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 106/205 (51%), Gaps = 18/205 (8%)
Query: 2 GKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ---- 57
GK + +RD +Y AKE G+R+RSAFKL+Q++ F + + ++DLCAAPG W Q
Sbjct: 5 GKVGKSRRDKFYHLAKETGYRSRSAFKLIQLNRRFQFLQKARALLDLCAAPGGWLQVAAK 64
Query: 58 --------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG 103
P+ P+ V+ +Q DIT R + + + K D+V+ DGAP+V
Sbjct: 65 FMPVSSLIVGVDLVPIKPLPNVVTLQEDITTERCRQALRKELKTWKVDVVLNDGAPNVGA 124
Query: 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPK 163
D + Q+ L L L + L GG FI K+FR +D L + F V KP+
Sbjct: 125 SWVHDAYSQAHLTLMALRLACDFLARGGCFITKVFRSRDYQPLLWIFQQLFHRVQATKPQ 184
Query: 164 SSRNSSIEAFAVCENYFPPEGFNPK 188
+SR+ S E F VC+ + P+ + K
Sbjct: 185 ASRHESAEIFVVCQGFLAPDKVDAK 209
>sp|P25582|SPB1_YEAST 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SPB1 PE=1 SV=2
Length = 841
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 140/300 (46%), Gaps = 46/300 (15%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQ---- 57
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW Q
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASK 66
Query: 58 --------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG 103
PM P+ VI Q DIT + + KAD V+ DGAP+V
Sbjct: 67 LCPVNSLIIGVDIVPMKPMPNVITFQSDITTEDCRSKLRGYMKTWKADTVLHDGAPNVGL 126
Query: 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPK 163
D F QSQL L L + L G F+ KIFR KD + L + F V KP
Sbjct: 127 GWVQDAFTQSQLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPP 186
Query: 164 SSRNSSIEAFAVCENYFPPEGFNPK--DLHRLLEKVGSPWGGEDQDCS-----------S 210
+SRN S E F VC+ + P+ +P+ D + E++ P G ++ +
Sbjct: 187 ASRNVSAEIFVVCKGFKAPKRLDPRLLDPKEVFEEL--PDGQQNMESKIYNPEKKVRKRQ 244
Query: 211 GWLEGPNKVYI------------PFLACGDLNGYDSDRSYPLPKVADGTYQSLDPVQPPI 258
G+ EG N +Y P G++N + D + K+ Q+ D + I
Sbjct: 245 GYEEGDNLLYHETSILDFVRTEDPISMLGEMNKFTIDENDHEWKILKKLKQTTDEFRSCI 304
>sp|Q4P6G5|SPB1_USTMA AdoMet-dependent rRNA methyltransferase SPB1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=SPB1 PE=3 SV=1
Length = 921
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 116/228 (50%), Gaps = 19/228 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ----- 57
K ++ + D +Y AKE+G+R+R+AFKL+Q++++FN E + +DLCAAPG W Q
Sbjct: 8 KTAKGRLDKFYWLAKEQGYRSRAAFKLVQLNKKFNFLEKARCCIDLCAAPGGWLQVASKF 67
Query: 58 -------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL 104
P+ PI I DI + + + + + KAD+V+ DGAP+V
Sbjct: 68 MPANSLIVGVDLVPIKPIPRTITFAEDINSYKCRDQLRQILKDWKADIVIHDGAPNVGTA 127
Query: 105 HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKS 164
D + QS+L L L + L GG F+ K+FR KD + L F V KP S
Sbjct: 128 WVQDAYAQSELTLQSLRLAVEFLTAGGTFVTKVFRSKDYNNLLWVFNQLFKKVEATKPSS 187
Query: 165 SRNSSIEAFAVCENYFPPEGFNPKDLH-RLLEKVGSPWGGEDQDCSSG 211
SRN S E F VC+ Y P +PK L R + K P DQD +G
Sbjct: 188 SRNVSAEIFVVCQGYKNPARIDPKFLDPRHVFKELDPASLADQDQEAG 235
>sp|Q6FX63|SPB1_CANGA AdoMet-dependent rRNA methyltransferase SPB1 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SPB1 PE=3 SV=1
Length = 837
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 108/207 (52%), Gaps = 19/207 (9%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQ---- 57
K S+ + D YY AKE+G+RARS+FK++QI+E+F F E K V+DLCAAPGSW Q
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKFGHFLEKSKVVIDLCAAPGSWCQVASK 66
Query: 58 --------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG 103
PM P+ VI Q DIT + + KAD V+ DGAP+V
Sbjct: 67 LCPVNSLIIGVDIVPMKPMPNVITFQSDITTEDCRSRLRGYMKTWKADTVLHDGAPNVGL 126
Query: 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPK 163
D F QS L L L + L G F+ KIFR KD + L + F V KP
Sbjct: 127 GWAQDAFTQSHLTLQALKLAVENLVVNGTFVTKIFRSKDYNKLIWVFQQLFEKVEATKPP 186
Query: 164 SSRNSSIEAFAVCENYFPPEGFNPKDL 190
+SRN S E F VC+ + P+ +P+ L
Sbjct: 187 ASRNVSAEIFVVCKGFKAPKKLDPRLL 213
>sp|Q6BNQ8|SPB1_DEBHA AdoMet-dependent rRNA methyltransferase SPB1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=SPB1 PE=3 SV=2
Length = 831
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 106/205 (51%), Gaps = 19/205 (9%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF-EGVKRVVDLCAAPGSWSQ---- 57
K S+ + D YY AKE+G+RARS+FK++QI+E++ F E K V+DLCAAPGSW Q
Sbjct: 7 KNSKGRLDRYYYLAKEKGYRARSSFKIIQINEKYGHFLEKSKVVIDLCAAPGSWCQVASQ 66
Query: 58 --------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG 103
P+ + I Q DIT + H KAD V+ DGAP+V
Sbjct: 67 LCPINSLIIGVDIVPIKALPNCITFQSDITTEDCRSQLRGHMKTWKADTVLHDGAPNVGL 126
Query: 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPK 163
D F QS L L L + L GG F+ KIFR +D + L + F V KP
Sbjct: 127 GWVQDAFTQSHLTLQALKLAVENLNTGGTFVTKIFRSRDYNNLMWVFQQLFEKVEATKPP 186
Query: 164 SSRNSSIEAFAVCENYFPPEGFNPK 188
+SRN S E F VC+ Y P+ +P+
Sbjct: 187 ASRNVSAEIFVVCKGYKSPKKMDPR 211
>sp|O42832|SPB1_SCHPO AdoMet-dependent rRNA methyltransferase spb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spb1 PE=1 SV=2
Length = 802
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 134/275 (48%), Gaps = 34/275 (12%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ----- 57
K ++ + D +Y+ AKE+G+R+R+AFKL+Q++++++ E K ++DLCAAPG W Q
Sbjct: 7 KTAKGRLDKWYKLAKEQGYRSRAAFKLVQLNQKYSFLEKAKVIIDLCAAPGGWLQVASKT 66
Query: 58 -------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL 104
P+ PI DIT+ + + + KAD+V+ DGAP+V
Sbjct: 67 CKPGSLIVGVDLAPIKPIPNCHTFVEDITSDKCRSQLRGYLKTWKADVVLHDGAPNVGSA 126
Query: 105 HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKS 164
D + Q+QL+L + + L GG F+ K+FR +D + L K F V KP S
Sbjct: 127 WLQDAYGQAQLVLMSMKLACEFLVAGGTFVTKVFRSRDYNNLLWVFKQLFNKVEATKPPS 186
Query: 165 SRNSSIEAFAVCENYFPPEGFNPK--DLHRLLEKVGSPWGGEDQDCSSGWLEGPNKVYIP 222
SRN S E F VC Y P+ +P+ D + E+V P D KV+ P
Sbjct: 187 SRNVSAEIFVVCRGYKAPKKLDPRFTDPRTVFEEVQEPVTNVDA-----------KVFHP 235
Query: 223 FLACGDLNGYDSDRSYPLPK--VADGTYQSLDPVQ 255
GY +D Y L K +A + DP+Q
Sbjct: 236 EKRKRSREGY-ADDDYTLHKTVLASEFVTANDPIQ 269
>sp|A0B8A1|RLME_METTP Ribosomal RNA large subunit methyltransferase E OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=rlmE PE=3 SV=1
Length = 255
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 108/192 (56%), Gaps = 17/192 (8%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------- 57
+RD++D YYRKAKEEG+RARSA+KL QI+++F+I RVVDL AAPG W Q
Sbjct: 2 ARDQKDHYYRKAKEEGYRARSAYKLKQINDKFHIIRRGSRVVDLGAAPGGWLQVARELSG 61
Query: 58 ---------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD 108
+ P+EG++ +QGDIT T E + G +AD+V+ D AP+++G+ D+D
Sbjct: 62 GIVVGVDLERIEPLEGIVTIQGDITKEETLEQIAAAL-GGQADVVISDAAPNLSGIWDVD 120
Query: 109 EFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNS 168
L A L + +L+ GG F+ K+F+G + ++K F V P +SR
Sbjct: 121 HARSIDLSRAALRIAKRLLRPGGSFLVKVFQGDMFNDYLEEVKREFSSVHAYTPPASRKE 180
Query: 169 SIEAFAVCENYF 180
S E + + +
Sbjct: 181 SAEIYVIGKKLL 192
>sp|Q4FMX1|RLME_PELUB Ribosomal RNA large subunit methyltransferase E OS=Pelagibacter
ubique (strain HTCC1062) GN=rlmE PE=3 SV=1
Length = 203
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 107/190 (56%), Gaps = 18/190 (9%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------- 57
++ KRDIY R+++ +G+RARSA+KL++IDE+F IF+ V+DL A+PGSWSQ
Sbjct: 12 NKQKRDIYVRQSQVDGYRARSAYKLIEIDEKFKIFKNGISVIDLGASPGSWSQYISRTVK 71
Query: 58 ----------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDM 107
M IE IQ++GD T+ + E + F K D+VV D A + TG+ D+
Sbjct: 72 SGRLVSIDLKGMEEIENTIQIKGDFTDLESQEKIKALFK-SKVDVVVSDMAVNTTGIKDI 130
Query: 108 DEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRN 167
D +L + + +L + G+F++KIF G + + K F V KPKSSR
Sbjct: 131 DAIYTGELAMEAMNFSKEMLVKEGRFVSKIFLGSSFNEIVALGKKLFKEVKVFKPKSSRK 190
Query: 168 SSIEAFAVCE 177
S E+F +C+
Sbjct: 191 ESKESFIICK 200
>sp|Q54NX0|SPB1_DICDI Putative rRNA methyltransferase OS=Dictyostelium discoideum GN=fsjC
PE=3 SV=1
Length = 833
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 106/206 (51%), Gaps = 18/206 (8%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ----- 57
K ++ + D +Y AKE+G+R+R+AFKL+Q+++++N K +DLCAAPG W Q
Sbjct: 7 KLAKGRLDKFYYMAKEQGYRSRAAFKLIQLNKKYNFLGTAKACLDLCAAPGGWMQVASKY 66
Query: 58 -------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL 104
P+ + I + DIT + + + K D+ + DGAP++
Sbjct: 67 MPVQSLIVGVDLVPIRQVRNCIGLTEDITTQKCRTEIKKALKTWKVDVCLHDGAPNMGTS 126
Query: 105 HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKS 164
D + Q++L L L + T L GG F+ K+FRG D + L F V KP S
Sbjct: 127 WVQDAYQQAELTLHALKLATEFLTTGGWFVTKVFRGSDYNSLIWVFNKLFKKVESTKPPS 186
Query: 165 SRNSSIEAFAVCENYFPPEGFNPKDL 190
SRN+S E F VC+ + P+ +PK L
Sbjct: 187 SRNASAEIFVVCQGFLNPKRIDPKLL 212
>sp|Q8TR92|RLME_METAC Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=rlmE PE=3 SV=1
Length = 272
Score = 121 bits (303), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 112/215 (52%), Gaps = 16/215 (7%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSW--------- 55
+RD+RD YY +AKEEG+R+R++FKL QI+E+ N+ + VVDL AAPG W
Sbjct: 2 ARDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQLSG 61
Query: 56 -------SQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD 108
Q +APIEGV +QGDI T + +IR AD+V+CD AP+++G D
Sbjct: 62 GKVLGVDLQRIAPIEGVETIQGDINADSTIKKIIRAVGEKGADVVLCDAAPNLSGNWSYD 121
Query: 109 EFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNS 168
+L + L +LK G F+ K+F+G + +++ F V P++SR+
Sbjct: 122 HARSIELTTSALECAKKILKPKGNFVVKVFQGDMFNDYLEKVRDNFVHVKAYSPQASRSQ 181
Query: 169 SIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGG 203
S E + + + + +EK+GS G
Sbjct: 182 SAEIYVIGKKFLTAPLRRGDKFVVDIEKLGSGGDG 216
>sp|Q2GB53|RLME_NOVAD Ribosomal RNA large subunit methyltransferase E OS=Novosphingobium
aromaticivorans (strain DSM 12444) GN=rlmE PE=3 SV=1
Length = 222
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 93/192 (48%), Gaps = 18/192 (9%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------- 57
SR D Y +KAK EGWR+R+AFKL+++DE+F + +G KRVVDL APG WSQ
Sbjct: 27 SRQLNDPYVKKAKAEGWRSRAAFKLIELDEKFGLLKGAKRVVDLGIAPGGWSQVVRKKAP 86
Query: 58 ----------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDM 107
P PIEGV + D E + DG DLV+ D A + G
Sbjct: 87 AAKIVGIDLLPTEPIEGVTIFEMDFMADEAPEALQSALDGP-PDLVLSDMAANTVGHKQT 145
Query: 108 DEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRN 167
D L+ + L GG F+AK+F G + L LK F V AKP +SR
Sbjct: 146 DHLRTMGLVETAVDFAVQTLAPGGAFVAKVFAGGTDTELLAILKKNFTTVKHAKPPASRK 205
Query: 168 SSIEAFAVCENY 179
S E + + + +
Sbjct: 206 DSSEWYVIAQGF 217
>sp|Q466Q1|RLME_METBF Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=rlmE PE=3 SV=1
Length = 263
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 109/215 (50%), Gaps = 16/215 (7%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSW--------- 55
+RD+RD YYR+AKEEG+R+R++FKL QI+E +I VVDL AAPG W
Sbjct: 2 ARDRRDYYYRQAKEEGYRSRASFKLKQINERHHIINRGDSVVDLGAAPGGWLQVAKELSG 61
Query: 56 -------SQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD 108
Q + PIEGV +QG+I T + +I+ AD+V+CD AP+++G D
Sbjct: 62 GKVLGVDLQRIVPIEGVETIQGNINADSTIQKIIKTVGAKGADVVLCDAAPNLSGNWSYD 121
Query: 109 EFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNS 168
+L + L +LK G F+ K+F+G + +++ F PK+SR+
Sbjct: 122 HARSIELATSALECAKKILKPKGNFVVKVFQGDMFNDYMQKVRDNFVRTMAYSPKASRSQ 181
Query: 169 SIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGG 203
S E + + + + +EK+GS G
Sbjct: 182 SAEIYVIGKKFLTAPLRKGDKFVVDIEKLGSSGDG 216
>sp|Q5GS59|RLME_WOLTR Ribosomal RNA large subunit methyltransferase E OS=Wolbachia sp.
subsp. Brugia malayi (strain TRS) GN=rlmE PE=3 SV=1
Length = 216
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 99/195 (50%), Gaps = 22/195 (11%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ-------- 57
R D Y +K ++ +R+RSA+KL++ID +F + + +++VDL A+PG WSQ
Sbjct: 24 RHLNDQYVQKTNKDSYRSRSAYKLIEIDNKFKLLQAGQKIVDLGASPGGWSQVASQKGVK 83
Query: 58 -------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEF 110
P+ I GV +Q DI T F K D+++ D AP+ GL +D
Sbjct: 84 VVAIDIKPVNTISGVKYIQYDINELETLR---ERFKDQKFDVILSDMAPESCGLKSLDHI 140
Query: 111 VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSI 170
L A L H L GGKF+ KIF+G+ Y +LK F +V + KPKSSR+ S
Sbjct: 141 RIMLLCEAALNFAKHFLNYGGKFVVKIFQGESDKDFYNELKKMFKIVKYFKPKSSRSEST 200
Query: 171 EAFAV----CENYFP 181
E + V N FP
Sbjct: 201 EMYLVGLGFISNSFP 215
>sp|Q5NQH8|RLME_ZYMMO Ribosomal RNA large subunit methyltransferase E OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=rlmE PE=3 SV=1
Length = 221
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 18/191 (9%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ-------- 57
R D Y +KA+ EG+R+R+AFKL+++DE F++ + +R++DL APG WSQ
Sbjct: 25 RQLNDPYVQKAQAEGYRSRAAFKLIELDERFSLLKNARRIIDLGIAPGGWSQVARKKAPQ 84
Query: 58 ---------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD 108
APIEGV Q D T+ + +I G ADLV+ D A + G D
Sbjct: 85 AKIVGIDLLEAAPIEGVTIFQNDFTDPEAQKKLIEALGGA-ADLVLSDMAANTIGHAQTD 143
Query: 109 EFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNS 168
L+ + L+EGG F+AK+ G L LK F V AKP +SR
Sbjct: 144 HLRTMALVEEAAVFASETLREGGSFVAKVLAGGADKDLVALLKRLFGQVKHAKPPASRRE 203
Query: 169 SIEAFAVCENY 179
S E + + +N+
Sbjct: 204 SSEWYVIAQNF 214
>sp|Q2NHD6|RLME_METST Ribosomal RNA large subunit methyltransferase E OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=rlmE PE=3 SV=1
Length = 206
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 106/199 (53%), Gaps = 24/199 (12%)
Query: 3 KASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMA-- 60
KA DK YY+ AK++ +R+R+++KL Q+D+++++ + VVDL AAPG WSQ +A
Sbjct: 5 KAKHDKEH-YYKLAKKQNYRSRASYKLKQLDKKYSLLKPDYNVVDLGAAPGGWSQVVAET 63
Query: 61 ------------------PI--EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPD 100
PI E V+GD T T +++I DG KAD+V+ D AP
Sbjct: 64 IGEEGKGQIISVDLEYIKPIDHEAYTGVKGDFTTKETQDIIIELIDG-KADVVLSDAAPK 122
Query: 101 VTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFA 160
+TG+ D+D F L +A + ++ ++LK G I K F+G+ + LK F V
Sbjct: 123 LTGIKDIDNFRAYDLSMAVIEIIDNILKNNGNLIMKAFQGEAYQEIIKNLKKKFRNVKTT 182
Query: 161 KPKSSRNSSIEAFAVCENY 179
KP SSR S E + + +
Sbjct: 183 KPNSSRKRSAEMYVIARGF 201
>sp|Q8PUP4|RLME_METMA Ribosomal RNA large subunit methyltransferase E OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=rlmE PE=3 SV=1
Length = 268
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 110/215 (51%), Gaps = 16/215 (7%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSW--------- 55
+RD+RD YY +AKEEG+R+R++FKL QI+E+ N+ + VVDL AAPG W
Sbjct: 2 ARDRRDYYYHQAKEEGYRSRASFKLKQINEKHNVIKRGDSVVDLGAAPGGWLQVAKQLSG 61
Query: 56 -------SQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD 108
Q + PIEGV +QGDI T + +I+ AD+V+CD AP+++G D
Sbjct: 62 GKVLGVDLQRIDPIEGVETIQGDINAESTIKKIIKIVGEKGADVVLCDAAPNLSGNWSYD 121
Query: 109 EFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNS 168
+L + L +LK G F K+F+G + +++ F V P++SR+
Sbjct: 122 HARSIELATSALECAKKILKPKGNFAVKVFQGDMFNDYLDEVRNNFVRVKAYSPQASRSQ 181
Query: 169 SIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGG 203
S E + + + + +EK+GS G
Sbjct: 182 SAEIYIIGKKFLTAPLRKGDKFVVDIEKLGSSGDG 216
>sp|O28228|RLME_ARCFU Ribosomal RNA large subunit methyltransferase E OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=rlmE PE=3 SV=1
Length = 191
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 17/189 (8%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ-------- 57
+D++D YY KAK+EG+R+R+A+KLLQ++ F + V+DL A PG WSQ
Sbjct: 2 KDRQDYYYWKAKKEGYRSRAAYKLLQMNRTFKLIREGDLVLDLGATPGGWSQVAALLGAR 61
Query: 58 -------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEF 110
PM P+E V ++GDIT T E IR D+V+ D +P ++G +D
Sbjct: 62 VVAVDINPMKPLENVTFIRGDITLPETLE-KIREI-SPDYDVVMSDASPKISGKWTIDHL 119
Query: 111 VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSI 170
L A ++ VLK GG F+ K+F+G++ + +LK F F P++SR S
Sbjct: 120 RSIDLARASFSIAKEVLKPGGNFVVKVFQGEEIQKFFNELKPHFRFKKFHSPQASRKRSA 179
Query: 171 EAFAVCENY 179
E + + + +
Sbjct: 180 EVYFIGKRF 188
>sp|Q73IS9|RLME_WOLPM Ribosomal RNA large subunit methyltransferase E OS=Wolbachia
pipientis wMel GN=rlmE PE=3 SV=1
Length = 192
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 97/182 (53%), Gaps = 17/182 (9%)
Query: 9 RDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ----------- 57
D Y +K ++G+R+RSA+KL+++D +F +F+ ++++DL A+PG WSQ
Sbjct: 2 NDQYVQKTSKDGYRSRSAYKLVEMDNKFKLFQEGQKIIDLGASPGGWSQVASQKGANVVA 61
Query: 58 ----PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQS 113
PM I GV +Q DI N E++ F K D+++ D AP+ GL +D
Sbjct: 62 LDIKPMNAINGVEFIQCDIIN--EFEILREKFKDQKFDVILSDMAPESCGLKSLDHIRIM 119
Query: 114 QLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAF 173
L A L H L GG F+ KIF+G+ +LK F V + KPKSSR+ S E +
Sbjct: 120 LLCEAALNFAKHFLSHGGTFVVKIFQGESDKDFCNELKKMFKTVKYFKPKSSRSESTEMY 179
Query: 174 AV 175
V
Sbjct: 180 LV 181
>sp|A5VFI9|RLME_SPHWW Ribosomal RNA large subunit methyltransferase E OS=Sphingomonas
wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rlmE
PE=3 SV=1
Length = 229
Score = 114 bits (286), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 26/195 (13%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ-------- 57
R D Y RKA+ EG+R+R+A+KL+++DE F+ G KRV+DL APG W+Q
Sbjct: 28 RQLNDPYVRKAQAEGYRSRAAYKLIELDERFHFLRGAKRVIDLGIAPGGWTQVVRRVCPQ 87
Query: 58 ---------PMAPIEGVIQVQGDITN----ARTAEVVIRHFDGCKADLVVCDGAPDVTGL 104
P PI+G I +Q D + A+ AE + G AD+V+ D A + G
Sbjct: 88 AAIVGIDLLPTDPIDGAIILQMDFMSDEAPAQLAEAL-----GGPADIVLSDMAANTVGH 142
Query: 105 HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKS 164
D L+ AG + VL+ GG ++AK+ G L +LK F V AKP +
Sbjct: 143 QQTDHLRTMALVEAGCLFASEVLRPGGTYVAKVLAGGADHGLVAELKRLFTTVKHAKPPA 202
Query: 165 SRNSSIEAFAVCENY 179
SR S E + + + +
Sbjct: 203 SRKDSSEWYVIAQGF 217
>sp|Q9HN40|RLME_HALSA Ribosomal RNA large subunit methyltransferase E OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=rlmE PE=3 SV=1
Length = 259
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 101/195 (51%), Gaps = 22/195 (11%)
Query: 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMA------ 60
+++D YY K+K+EG+R+R+A+KL Q+D+ F++ G VVDL AAPG W Q A
Sbjct: 3 NRKDHYYNKSKQEGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAAERAGAR 62
Query: 61 ---------------PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLH 105
G+ V+GD+T T + V +G AD+VV D APD+TG +
Sbjct: 63 GKVVGVDFQSITQFETDAGLETVRGDMTEDETRQRVRDAANGS-ADVVVSDMAPDMTGEY 121
Query: 106 DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSS 165
D+D L L +L GG F+ K+F G+D L ++ F V P +S
Sbjct: 122 DLDHARSVHLARQALETARELLDAGGHFVVKVFDGRDFQDLLADIEDEFAFVATHSPDAS 181
Query: 166 RNSSIEAFAVCENYF 180
R++S E + V +N+
Sbjct: 182 RDASSELYVVGKNHI 196
>sp|B0R7G3|RLME_HALS3 Ribosomal RNA large subunit methyltransferase E OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rlmE
PE=3 SV=1
Length = 259
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 101/195 (51%), Gaps = 22/195 (11%)
Query: 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMA------ 60
+++D YY K+K+EG+R+R+A+KL Q+D+ F++ G VVDL AAPG W Q A
Sbjct: 3 NRKDHYYNKSKQEGYRSRAAYKLQQLDDRFDVLFGGASVVDLGAAPGGWLQVAAERAGAR 62
Query: 61 ---------------PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLH 105
G+ V+GD+T T + V +G AD+VV D APD+TG +
Sbjct: 63 GKVVGVDFQSITQFETDAGLETVRGDMTEDETRQRVRDAANGS-ADVVVSDMAPDMTGEY 121
Query: 106 DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSS 165
D+D L L +L GG F+ K+F G+D L ++ F V P +S
Sbjct: 122 DLDHARSVHLARQALETARELLDAGGHFVVKVFDGRDFQDLLADIEDEFAFVATHSPDAS 181
Query: 166 RNSSIEAFAVCENYF 180
R++S E + V +N+
Sbjct: 182 RDASSELYVVGKNHI 196
>sp|Q0BT08|RLME_GRABC Ribosomal RNA large subunit methyltransferase E OS=Granulibacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rlmE
PE=3 SV=1
Length = 230
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 97/197 (49%), Gaps = 25/197 (12%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------- 57
+R D Y AK +GWR+R+AFKL+++D++F + RV+DL AAPG W+Q
Sbjct: 34 TRQLNDPYVAAAKAQGWRSRAAFKLIELDDKFGLISKGSRVIDLGAAPGGWTQVAMKRGA 93
Query: 58 ---------PMAPIEGVIQVQGDITN----ARTAEVVIRHFDGCKADLVVCDGAPDVTGL 104
P+ P+ G +QGD + AR + ++ G KADLV+ D AP+ TG
Sbjct: 94 AVVVGVDLLPVDPVPGATLIQGDFNDDDMPARLSSLM-----GGKADLVMSDMAPNTTGH 148
Query: 105 HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKS 164
D L L L GG F+AK+F+G L +K F V AKP S
Sbjct: 149 AATDHMRIIALTELALHFAFDALAPGGAFVAKVFQGGSEKQLLEPMKQRFASVRHAKPAS 208
Query: 165 SRNSSIEAFAVCENYFP 181
SR S E + V + + P
Sbjct: 209 SRKESSELYVVAKGFRP 225
>sp|C5CKU4|RLME_VARPS Ribosomal RNA large subunit methyltransferase E OS=Variovorax
paradoxus (strain S110) GN=rlmE PE=3 SV=1
Length = 222
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 94/192 (48%), Gaps = 26/192 (13%)
Query: 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------------ 57
D Y + A EG+RAR+A+KL +IDE + + + VVDL + PG+WSQ
Sbjct: 21 DPYVKLATREGYRARAAYKLKEIDESLGLVKPGQLVVDLGSTPGAWSQYLRRRMSPEGAA 80
Query: 58 --------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTG 103
PM PIEGV +QGD A E V+ G KADLVV D AP+++G
Sbjct: 81 AGELNGTIIALDILPMEPIEGVTFLQGDFREAELLEQVLGVLAGRKADLVVSDMAPNLSG 140
Query: 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPK 163
+H D + LI + H LK G +AK+F G L K F V KPK
Sbjct: 141 IHSADAARVAHLIELAIDFAQHHLKPEGALVAKLFHGSGYDELVKLFKANFRTVKPFKPK 200
Query: 164 SSRNSSIEAFAV 175
+SR+ S E F V
Sbjct: 201 ASRDKSSETFLV 212
>sp|A6UUK5|RLME_META3 Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rlmE PE=3
SV=1
Length = 269
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 102/193 (52%), Gaps = 21/193 (10%)
Query: 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQP--------- 58
K D YY+ AK+ +R+R+++KLLQ++E+F I VVDL APG W Q
Sbjct: 13 KNDFYYKLAKQNHYRSRASYKLLQLNEKFEIIYEGDNVVDLGCAPGGWLQASYDLVGEDG 72
Query: 59 ---------MAPI--EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDM 107
+ P+ E ++ +QGD+T T +I KAD+V+CD +P+++G+ ++
Sbjct: 73 FVIGVDLQKVKPLREENIVAIQGDMTKKETINKII-DLMPSKADVVICDASPNISGVWEV 131
Query: 108 DEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRN 167
D +L L L TH+L++ G F+ K+F+G L +F V KPK+SR+
Sbjct: 132 DHSRSIELSLMALIATTHLLRKNGNFVVKVFQGSLFDQYVQLLTKYFKKVQTTKPKASRS 191
Query: 168 SSIEAFAVCENYF 180
S E + + + +
Sbjct: 192 VSAEVYVIGKKFL 204
>sp|B3PQL4|RLME_RHIE6 Ribosomal RNA large subunit methyltransferase E OS=Rhizobium etli
(strain CIAT 652) GN=rlmE PE=3 SV=1
Length = 239
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 94/195 (48%), Gaps = 22/195 (11%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ-------- 57
R D Y ++A+ EG+RAR+AFKLL+IDE+++I G +R++DL AAPGSWSQ
Sbjct: 34 RHINDPYVQRAQLEGYRARAAFKLLEIDEKYHILRGARRIIDLGAAPGSWSQIAAKVTGS 93
Query: 58 -------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL 104
MA + GV +Q D + E ++ G DLV+ D A TG
Sbjct: 94 TDEDIRVAAIDFLEMAQLPGVKILQLDFLDPSAPEKLMEAVGGT-PDLVISDMAAPTTGH 152
Query: 105 HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKS 164
H D L VL EGG F+ K F+G L LK F V KP S
Sbjct: 153 HRTDHLRTMHLCEVAAHFAIEVLGEGGHFLTKTFQGGTERDLLAMLKQNFRQVVHVKPNS 212
Query: 165 SRNSSIEAFAVCENY 179
SR S+E F + + +
Sbjct: 213 SRAESVEMFLLAKGF 227
>sp|Q5FNQ1|RLME_GLUOX Ribosomal RNA large subunit methyltransferase E OS=Gluconobacter
oxydans (strain 621H) GN=rlmE PE=3 SV=1
Length = 268
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 95/193 (49%), Gaps = 17/193 (8%)
Query: 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------- 57
+R D Y A+++GWR+R+AFKL++ID+ F + R++DL AAPG W+Q
Sbjct: 67 NRQLNDPYVAAARKQGWRSRAAFKLIEIDDRFKLIGEGTRIIDLGAAPGGWTQVAVKRGA 126
Query: 58 ---------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMD 108
P+ P+ G ++GD T+ + ++ G ADLV+ D AP+ TG D
Sbjct: 127 KHVVGLDLLPVDPVAGAEIIEGDFTDPEMPD-RLKDMLGGPADLVMSDMAPNTTGHAATD 185
Query: 109 EFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNS 168
L L VL EGG FIAK+F+G + +K F V KP +SR
Sbjct: 186 HMRIMGLAEGALDFAFQVLAEGGSFIAKVFQGGSEKDMLALMKTAFSSVKHVKPPASRKE 245
Query: 169 SIEAFAVCENYFP 181
S E + + + P
Sbjct: 246 SSELYVIATGFRP 258
>sp|A6USA0|RLME_METVS Ribosomal RNA large subunit methyltransferase E OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rlmE
PE=3 SV=1
Length = 259
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 113/214 (52%), Gaps = 31/214 (14%)
Query: 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPM-------- 59
K+D YY AK + +R+R+ +KL Q++E+FNI + VVDL APG W Q
Sbjct: 13 KKDPYYNLAKRKNYRSRATYKLFQLNEKFNIIKEKNVVVDLGCAPGGWLQAARDMTGEEG 72
Query: 60 ------------APIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDM 107
P E VI V+GD+T+ T + I+ K D+++CD +P+++G+ D+
Sbjct: 73 FIVGIDLQQIKPLPYENVIAVKGDMTDEETLK-KIQDILPEKPDVIICDASPNISGVWDV 131
Query: 108 DEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL---FFPVVTFAKPKS 164
D +L L T +LK+GG F+ K+F+G L Y ++L +F KP++
Sbjct: 132 DHTRSLELTTMALMTATKMLKKGGNFVVKVFQG---DLFYKYVELVSEYFDKAFTTKPRA 188
Query: 165 SRNSSIEAFAVCENYFPPEGFNPK---DLHRLLE 195
SR S E + + ++Y + FN K D+ +LL+
Sbjct: 189 SREESAEVYVIAKHY-NGKKFNMKSKSDIVKLLK 221
>sp|B5ZR94|RLME_RHILW Ribosomal RNA large subunit methyltransferase E OS=Rhizobium
leguminosarum bv. trifolii (strain WSM2304) GN=rlmE PE=3
SV=1
Length = 239
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 93/195 (47%), Gaps = 22/195 (11%)
Query: 6 RDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ-------- 57
R D Y ++A+ EG+RAR+AFKLL+IDE+ +I G KR++DL AAPGSWSQ
Sbjct: 34 RHINDPYVQRAQLEGYRARAAFKLLEIDEKHHILRGAKRIIDLGAAPGSWSQIAAKVTGS 93
Query: 58 -------------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGL 104
MA + GV +Q D + E ++ G DLV+ D A TG
Sbjct: 94 TDEDIRVAAIDFLEMAQLPGVKILQLDFLDPTAPEKLLEAVGGT-PDLVISDMAAPTTGH 152
Query: 105 HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKS 164
H D L VL EGG F+ K F+G L LK F V KP +
Sbjct: 153 HRTDHLRTMHLCEVAAQFAVEVLGEGGHFLTKTFQGGTERELLAMLKQNFRQVVHVKPNA 212
Query: 165 SRNSSIEAFAVCENY 179
SR S+E F + + +
Sbjct: 213 SRAESVEMFLLAKGF 227
>sp|Q58771|RLME_METJA Ribosomal RNA large subunit methyltransferase E
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rlmE PE=3
SV=1
Length = 245
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 24/195 (12%)
Query: 8 KRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWS----------- 56
KRD YY+ AK+ +R+R++FKL+Q++E+FN+ + K V+DL APG W
Sbjct: 13 KRDFYYKLAKKLKYRSRASFKLMQLNEKFNVIKPGKIVLDLGCAPGGWMQVAREIVGDKG 72
Query: 57 -------QPMAPIE--GVIQVQGDITNARTAEVVIRHF---DGCKADLVVCDGAPDVTGL 104
QP+ P E V+ ++GD T IR D K D+V+ D +P+++G
Sbjct: 73 FVIGIDLQPVKPFEYDNVVAIKGDFTLEENLN-KIRELIPNDEKKVDVVISDASPNISGY 131
Query: 105 HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKS 164
D+D L+ L + T +LKE G F+AK+F G +K +F V KP++
Sbjct: 132 WDIDHARSIDLVTTALQIATEMLKERGNFVAKVFYGDMIDDYVNLVKKYFEKVYITKPQA 191
Query: 165 SRNSSIEAFAVCENY 179
SR S E + + + Y
Sbjct: 192 SRKESAEVYVIAKRY 206
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,476,377
Number of Sequences: 539616
Number of extensions: 4980660
Number of successful extensions: 11453
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 10472
Number of HSP's gapped (non-prelim): 520
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)