Query 023158
Match_columns 286
No_of_seqs 314 out of 1696
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:51:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1099 SAM-dependent methyltr 100.0 1.3E-94 2.9E-99 642.1 17.7 266 1-276 1-292 (294)
2 COG0293 FtsJ 23S rRNA methylas 100.0 2.6E-52 5.7E-57 369.3 16.8 178 5-182 9-204 (205)
3 KOG4589 Cell division protein 100.0 2.8E-49 6.1E-54 343.1 13.4 179 5-183 33-230 (232)
4 KOG1098 Putative SAM-dependent 100.0 8.7E-44 1.9E-48 350.2 8.2 194 1-194 1-215 (780)
5 PRK11188 rrmJ 23S rRNA methylt 100.0 1.5E-40 3.3E-45 296.1 16.7 177 5-181 15-209 (209)
6 PF01728 FtsJ: FtsJ-like methy 100.0 1.8E-40 3.8E-45 287.2 4.3 159 21-179 1-181 (181)
7 TIGR00438 rrmJ cell division p 100.0 1.3E-29 2.9E-34 220.8 17.9 170 10-179 1-188 (188)
8 KOG3673 FtsJ-like RNA methyltr 99.8 2.8E-21 6.1E-26 189.0 5.0 162 20-182 229-447 (845)
9 KOG3674 FtsJ-like RNA methyltr 99.8 4.3E-20 9.2E-25 179.1 5.7 166 19-185 107-324 (696)
10 PF01209 Ubie_methyltran: ubiE 99.1 1.6E-10 3.4E-15 105.1 6.5 112 39-157 45-173 (233)
11 COG2226 UbiE Methylase involve 99.1 3.5E-10 7.5E-15 103.2 7.6 105 40-151 50-170 (238)
12 PRK11760 putative 23S rRNA C24 99.0 2.2E-09 4.8E-14 102.3 10.7 79 18-99 181-280 (357)
13 PRK14902 16S rRNA methyltransf 98.9 2.6E-09 5.5E-14 105.2 8.4 121 40-162 249-409 (444)
14 PTZ00146 fibrillarin; Provisio 98.9 1.2E-08 2.7E-13 95.6 11.5 85 39-137 130-237 (293)
15 COG0144 Sun tRNA and rRNA cyto 98.9 1.8E-08 3.8E-13 97.0 11.5 113 40-153 155-307 (355)
16 TIGR00563 rsmB ribosomal RNA s 98.8 1.4E-08 3E-13 99.6 9.2 113 40-152 237-386 (426)
17 TIGR00446 nop2p NOL1/NOP2/sun 98.8 1.7E-08 3.8E-13 93.0 8.6 112 40-152 70-217 (264)
18 COG2230 Cfa Cyclopropane fatty 98.8 1.3E-08 2.9E-13 94.9 7.2 106 26-142 58-181 (283)
19 PRK10901 16S rRNA methyltransf 98.8 2.3E-08 5E-13 98.1 9.1 112 40-152 243-390 (427)
20 PRK14903 16S rRNA methyltransf 98.7 3.3E-08 7.2E-13 97.3 9.4 112 40-152 236-384 (431)
21 PRK14901 16S rRNA methyltransf 98.7 2.8E-08 6E-13 97.7 8.1 113 40-153 251-403 (434)
22 TIGR02752 MenG_heptapren 2-hep 98.7 2.9E-07 6.2E-12 82.0 11.9 100 39-150 43-164 (231)
23 PRK11933 yebU rRNA (cytosine-C 98.7 5.1E-08 1.1E-12 97.0 7.8 114 40-153 112-261 (470)
24 TIGR00478 tly hemolysin TlyA f 98.7 5.9E-08 1.3E-12 88.1 7.3 62 21-82 55-116 (228)
25 COG1189 Predicted rRNA methyla 98.7 1.1E-07 2.4E-12 86.4 9.0 101 17-137 55-178 (245)
26 PRK10258 biotin biosynthesis p 98.6 3.5E-07 7.5E-12 82.8 12.2 100 40-152 41-155 (251)
27 PF12847 Methyltransf_18: Meth 98.6 5.1E-08 1.1E-12 76.7 5.3 89 41-137 1-111 (112)
28 PRK04266 fibrillarin; Provisio 98.6 8.3E-08 1.8E-12 86.9 7.2 85 39-138 70-177 (226)
29 KOG1540 Ubiquinone biosynthesi 98.6 1.5E-07 3.2E-12 86.6 8.6 110 41-157 100-234 (296)
30 PRK14904 16S rRNA methyltransf 98.6 1.2E-07 2.6E-12 93.6 8.6 113 40-153 249-396 (445)
31 TIGR02072 BioC biotin biosynth 98.6 3.1E-07 6.6E-12 81.1 10.2 115 21-148 15-146 (240)
32 PF05175 MTS: Methyltransferas 98.6 2.6E-07 5.7E-12 79.5 8.9 111 41-161 31-161 (170)
33 PLN02233 ubiquinone biosynthes 98.5 6.8E-07 1.5E-11 82.3 11.1 94 39-144 71-189 (261)
34 TIGR00406 prmA ribosomal prote 98.5 4.2E-07 9.1E-12 84.8 9.6 107 39-160 157-282 (288)
35 TIGR00138 gidB 16S rRNA methyl 98.5 8.6E-07 1.9E-11 77.5 10.8 112 21-152 26-156 (181)
36 PRK14103 trans-aconitate 2-met 98.5 3.1E-07 6.7E-12 83.6 7.8 104 20-139 12-128 (255)
37 PRK11705 cyclopropane fatty ac 98.5 4.8E-07 1E-11 87.9 9.1 103 28-141 155-271 (383)
38 PF02353 CMAS: Mycolic acid cy 98.5 1.7E-07 3.7E-12 87.2 4.9 105 27-142 49-171 (273)
39 TIGR02469 CbiT precorrin-6Y C5 98.4 9E-07 1.9E-11 70.3 8.0 85 39-138 17-123 (124)
40 PF14314 Methyltrans_Mon: Viru 98.4 2E-06 4.3E-11 88.4 12.2 153 21-183 304-505 (675)
41 PRK00107 gidB 16S rRNA methylt 98.4 3.3E-06 7.1E-11 74.4 12.1 89 37-140 41-148 (187)
42 PRK11873 arsM arsenite S-adeno 98.4 2.3E-06 5E-11 78.5 11.1 88 39-138 75-184 (272)
43 PRK15068 tRNA mo(5)U34 methylt 98.4 1.8E-06 3.8E-11 82.1 10.3 103 24-138 106-227 (322)
44 PLN02244 tocopherol O-methyltr 98.4 2E-06 4.3E-11 82.1 10.4 99 30-139 103-225 (340)
45 KOG1122 tRNA and rRNA cytosine 98.4 7.5E-07 1.6E-11 86.6 7.4 123 40-167 240-402 (460)
46 TIGR00537 hemK_rel_arch HemK-r 98.4 5E-06 1.1E-10 71.7 11.7 117 41-159 19-163 (179)
47 KOG2198 tRNA cytosine-5-methyl 98.4 1.2E-06 2.6E-11 84.1 8.5 118 40-158 154-320 (375)
48 PRK09328 N5-glutamine S-adenos 98.4 5.2E-06 1.1E-10 75.8 12.3 126 40-167 107-268 (275)
49 PF13489 Methyltransf_23: Meth 98.3 4.5E-07 9.7E-12 75.2 4.3 92 39-142 20-120 (161)
50 PF08241 Methyltransf_11: Meth 98.3 4.3E-07 9.3E-12 68.4 3.9 78 46-135 1-95 (95)
51 PRK14967 putative methyltransf 98.3 4.1E-06 9E-11 74.9 10.8 126 26-152 22-174 (223)
52 PRK01683 trans-aconitate 2-met 98.3 2.2E-06 4.7E-11 77.9 9.0 88 39-138 29-131 (258)
53 PRK08287 cobalt-precorrin-6Y C 98.3 4.5E-06 9.8E-11 72.5 10.3 105 40-159 30-154 (187)
54 TIGR03534 RF_mod_PrmC protein- 98.3 3.8E-06 8.3E-11 75.3 10.0 126 41-167 87-247 (251)
55 TIGR01177 conserved hypothetic 98.3 2.4E-06 5.1E-11 81.1 9.0 105 39-147 180-304 (329)
56 PRK00517 prmA ribosomal protei 98.3 9.3E-06 2E-10 74.1 12.1 106 39-159 117-236 (250)
57 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.3 7.1E-07 1.5E-11 83.3 4.6 118 40-159 84-243 (283)
58 TIGR00452 methyltransferase, p 98.3 5.3E-06 1.1E-10 78.8 10.5 103 24-138 105-226 (314)
59 PF13847 Methyltransf_31: Meth 98.3 1.7E-06 3.7E-11 72.5 5.9 88 40-139 2-112 (152)
60 TIGR00740 methyltransferase, p 98.2 3.3E-06 7.2E-11 76.1 7.9 95 39-138 51-162 (239)
61 PRK14968 putative methyltransf 98.2 8.7E-06 1.9E-10 69.6 10.0 117 40-158 22-170 (188)
62 TIGR00477 tehB tellurite resis 98.2 4.5E-06 9.8E-11 73.4 8.4 92 34-137 24-133 (195)
63 PTZ00098 phosphoethanolamine N 98.2 3.6E-06 7.8E-11 77.6 7.8 99 30-139 42-158 (263)
64 PRK00121 trmB tRNA (guanine-N( 98.2 4.5E-06 9.7E-11 73.9 8.1 108 40-151 39-170 (202)
65 COG4123 Predicted O-methyltran 98.2 5.1E-06 1.1E-10 76.3 8.5 123 40-169 43-204 (248)
66 PRK11207 tellurite resistance 98.2 5.3E-06 1.2E-10 73.1 8.3 85 41-136 30-133 (197)
67 COG2227 UbiG 2-polyprenyl-3-me 98.2 3.7E-06 8E-11 76.7 7.4 86 41-139 59-163 (243)
68 PRK11036 putative S-adenosyl-L 98.2 5.1E-06 1.1E-10 75.7 8.3 88 40-140 43-152 (255)
69 PRK00377 cbiT cobalt-precorrin 98.2 2.6E-06 5.5E-11 74.9 6.0 107 39-161 38-169 (198)
70 PRK11088 rrmA 23S rRNA methylt 98.2 2.2E-05 4.7E-10 72.4 12.1 91 40-149 84-193 (272)
71 PLN02336 phosphoethanolamine N 98.2 7.4E-06 1.6E-10 81.0 9.1 95 32-139 258-371 (475)
72 PRK09489 rsmC 16S ribosomal RN 98.1 1.4E-05 3.1E-10 76.6 10.3 109 42-160 197-323 (342)
73 KOG1975 mRNA cap methyltransfe 98.1 2.3E-06 5E-11 81.0 4.2 134 7-153 75-250 (389)
74 COG2264 PrmA Ribosomal protein 98.1 2.5E-05 5.4E-10 73.7 11.1 109 39-161 160-288 (300)
75 PLN02396 hexaprenyldihydroxybe 98.1 1.5E-05 3.2E-10 76.0 9.6 87 41-140 131-238 (322)
76 TIGR01934 MenG_MenH_UbiE ubiqu 98.1 9.6E-06 2.1E-10 70.9 7.6 91 40-142 38-148 (223)
77 PRK05785 hypothetical protein; 98.1 8.5E-06 1.8E-10 73.5 7.4 79 40-130 50-140 (226)
78 PLN02490 MPBQ/MSBQ methyltrans 98.1 6E-06 1.3E-10 79.2 6.7 92 33-136 105-214 (340)
79 PRK08317 hypothetical protein; 98.1 8.7E-06 1.9E-10 71.5 7.2 87 39-137 17-124 (241)
80 TIGR00091 tRNA (guanine-N(7)-) 98.1 9.2E-06 2E-10 71.3 7.1 110 40-153 15-148 (194)
81 TIGR00536 hemK_fam HemK family 98.1 1.8E-05 3.8E-10 73.6 9.3 128 43-176 116-280 (284)
82 PF13659 Methyltransf_26: Meth 98.1 3.1E-06 6.7E-11 67.1 3.7 87 42-137 1-115 (117)
83 PRK07402 precorrin-6B methylas 98.1 5.7E-06 1.2E-10 72.4 5.7 113 39-152 38-157 (196)
84 PRK00811 spermidine synthase; 98.1 2.4E-05 5.3E-10 72.9 10.1 131 40-178 75-237 (283)
85 PRK12335 tellurite resistance 98.0 1.2E-05 2.7E-10 74.7 7.4 87 38-136 118-222 (287)
86 PRK00216 ubiE ubiquinone/menaq 98.0 3.9E-05 8.4E-10 67.8 10.3 91 40-142 50-163 (239)
87 PRK15451 tRNA cmo(5)U34 methyl 98.0 2.3E-05 4.9E-10 71.4 8.9 98 39-137 54-164 (247)
88 KOG1270 Methyltransferases [Co 98.0 2.6E-05 5.6E-10 72.1 9.1 84 42-138 90-196 (282)
89 PRK15001 SAM-dependent 23S rib 98.0 2E-05 4.4E-10 76.6 8.8 110 42-160 229-360 (378)
90 PRK14966 unknown domain/N5-glu 98.0 7E-05 1.5E-09 73.7 11.7 134 39-177 249-417 (423)
91 PRK06922 hypothetical protein; 98.0 2.1E-05 4.5E-10 81.0 8.4 91 41-137 418-537 (677)
92 PF05401 NodS: Nodulation prot 98.0 2E-05 4.3E-10 70.2 7.2 101 42-160 44-178 (201)
93 COG4106 Tam Trans-aconitate me 97.9 9.9E-06 2.1E-10 73.2 4.6 96 20-139 13-131 (257)
94 PF06325 PrmA: Ribosomal prote 97.9 3.7E-05 8.1E-10 72.4 8.4 112 31-158 153-280 (295)
95 PRK04457 spermidine synthase; 97.9 0.00011 2.4E-09 67.8 11.3 113 40-160 65-202 (262)
96 COG2813 RsmC 16S RNA G1207 met 97.9 0.00011 2.3E-09 69.3 11.1 109 42-160 159-286 (300)
97 COG1092 Predicted SAM-dependen 97.9 7.3E-05 1.6E-09 73.0 10.3 108 42-152 218-352 (393)
98 PRK01544 bifunctional N5-gluta 97.9 7.1E-05 1.5E-09 75.3 10.1 125 41-167 138-299 (506)
99 TIGR00417 speE spermidine synt 97.9 8.5E-05 1.9E-09 68.6 9.8 130 41-178 72-232 (270)
100 PF13649 Methyltransf_25: Meth 97.9 8.8E-06 1.9E-10 63.5 2.6 78 45-131 1-101 (101)
101 PRK15128 23S rRNA m(5)C1962 me 97.9 9E-05 2E-09 72.5 10.2 107 40-152 219-355 (396)
102 KOG1271 Methyltransferases [Ge 97.8 4.7E-05 1E-09 67.3 7.1 114 35-160 61-204 (227)
103 PF08003 Methyltransf_9: Prote 97.8 0.00022 4.8E-09 67.4 12.1 103 24-138 99-220 (315)
104 TIGR03533 L3_gln_methyl protei 97.8 7.9E-05 1.7E-09 69.5 8.9 109 41-152 121-264 (284)
105 PF06460 NSP13: Coronavirus NS 97.8 1E-05 2.2E-10 74.6 2.5 135 41-182 61-212 (299)
106 PRK13944 protein-L-isoaspartat 97.8 2E-05 4.3E-10 69.9 4.3 100 39-139 70-175 (205)
107 TIGR03704 PrmC_rel_meth putati 97.8 0.00037 8.1E-09 63.9 12.8 109 42-152 87-230 (251)
108 PF03291 Pox_MCEL: mRNA cappin 97.8 1.2E-05 2.7E-10 76.8 2.8 47 88-141 144-190 (331)
109 TIGR00080 pimt protein-L-isoas 97.8 2E-05 4.3E-10 70.1 3.7 81 39-137 75-177 (215)
110 smart00828 PKS_MT Methyltransf 97.8 9E-05 1.9E-09 65.7 7.7 93 43-138 1-105 (224)
111 PLN02336 phosphoethanolamine N 97.8 4.2E-05 9.2E-10 75.7 6.1 86 41-137 37-142 (475)
112 PRK13942 protein-L-isoaspartat 97.8 2.4E-05 5.2E-10 69.8 3.9 81 39-137 74-176 (212)
113 PRK11783 rlmL 23S rRNA m(2)G24 97.7 8.3E-05 1.8E-09 77.6 8.3 90 41-137 538-656 (702)
114 PF08242 Methyltransf_12: Meth 97.7 9.6E-06 2.1E-10 62.8 0.9 77 46-133 1-99 (99)
115 PRK11805 N5-glutamine S-adenos 97.7 9.2E-05 2E-09 70.0 7.6 96 43-139 135-265 (307)
116 cd02440 AdoMet_MTases S-adenos 97.7 0.00022 4.8E-09 52.7 8.1 82 44-136 1-103 (107)
117 COG2242 CobL Precorrin-6B meth 97.7 0.00019 4.2E-09 63.3 8.7 123 21-153 22-151 (187)
118 TIGR03438 probable methyltrans 97.7 0.00024 5.2E-09 66.7 9.8 102 39-144 61-184 (301)
119 PF03848 TehB: Tellurite resis 97.7 5.5E-05 1.2E-09 67.1 5.1 96 32-138 22-134 (192)
120 TIGR03587 Pse_Me-ase pseudamin 97.7 0.00017 3.6E-09 64.3 8.2 93 34-138 36-143 (204)
121 PLN03075 nicotianamine synthas 97.7 0.0002 4.4E-09 67.5 9.0 89 41-139 123-235 (296)
122 PRK14121 tRNA (guanine-N(7)-)- 97.6 0.00015 3.2E-09 70.8 7.7 133 41-178 122-278 (390)
123 PLN02366 spermidine synthase 97.6 0.00039 8.5E-09 65.9 9.6 111 40-159 90-233 (308)
124 TIGR01983 UbiG ubiquinone bios 97.6 0.00076 1.6E-08 59.5 10.7 87 41-140 45-152 (224)
125 TIGR02716 C20_methyl_CrtF C-20 97.5 0.00027 5.8E-09 66.1 7.5 94 39-138 147-255 (306)
126 PRK05134 bifunctional 3-demeth 97.5 0.00049 1.1E-08 61.4 8.7 87 40-139 47-153 (233)
127 COG2521 Predicted archaeal met 97.5 0.00027 5.9E-09 64.6 7.0 105 41-160 134-276 (287)
128 PF07021 MetW: Methionine bios 97.5 0.00028 6E-09 62.7 6.7 54 37-96 9-82 (193)
129 PRK00312 pcm protein-L-isoaspa 97.5 0.00018 3.9E-09 63.6 5.2 81 39-138 76-176 (212)
130 COG2519 GCD14 tRNA(1-methylade 97.4 0.00042 9.1E-09 63.9 7.4 92 39-155 92-214 (256)
131 smart00138 MeTrc Methyltransfe 97.4 0.00025 5.5E-09 65.5 6.0 40 88-136 202-241 (264)
132 PRK03612 spermidine synthase; 97.4 0.00074 1.6E-08 68.3 9.8 109 40-158 296-440 (521)
133 KOG3010 Methyltransferase [Gen 97.4 0.00018 4E-09 65.8 4.4 131 1-153 1-155 (261)
134 TIGR03840 TMPT_Se_Te thiopurin 97.4 0.00078 1.7E-08 60.5 8.3 98 40-139 33-154 (213)
135 PF01135 PCMT: Protein-L-isoas 97.4 8E-05 1.7E-09 66.8 1.9 76 39-139 70-174 (209)
136 PRK06202 hypothetical protein; 97.3 0.00089 1.9E-08 60.0 7.9 90 40-140 59-170 (232)
137 PRK13943 protein-L-isoaspartat 97.3 0.00028 6E-09 67.3 4.7 37 39-75 78-116 (322)
138 COG2890 HemK Methylase of poly 97.3 0.0017 3.7E-08 60.7 9.5 121 44-166 113-268 (280)
139 PLN02781 Probable caffeoyl-CoA 97.2 0.0013 2.9E-08 59.6 7.6 83 40-136 67-177 (234)
140 PF10672 Methyltrans_SAM: S-ad 97.2 0.00096 2.1E-08 62.7 6.8 101 41-151 123-253 (286)
141 PF05148 Methyltransf_8: Hypot 97.1 0.002 4.4E-08 58.0 7.8 98 41-158 72-182 (219)
142 TIGR02081 metW methionine bios 97.1 0.0011 2.3E-08 57.9 5.6 61 38-98 10-84 (194)
143 PHA03412 putative methyltransf 97.0 0.00094 2E-08 61.2 5.2 96 42-138 50-164 (241)
144 PHA03411 putative methyltransf 97.0 0.0013 2.9E-08 61.4 6.3 95 41-136 64-182 (279)
145 KOG3045 Predicted RNA methylas 97.0 0.0038 8.3E-08 58.0 8.8 96 41-157 180-287 (325)
146 smart00650 rADc Ribosomal RNA 97.0 0.0016 3.5E-08 55.6 6.0 34 40-74 12-45 (169)
147 PRK01581 speE spermidine synth 97.0 0.0065 1.4E-07 59.1 10.7 113 40-160 149-295 (374)
148 PF08704 GCD14: tRNA methyltra 97.0 0.00056 1.2E-08 63.0 3.1 100 39-159 38-169 (247)
149 KOG4300 Predicted methyltransf 96.9 0.0049 1.1E-07 55.7 8.5 108 43-152 78-197 (252)
150 PLN02232 ubiquinone biosynthes 96.9 0.0037 8.1E-08 53.2 7.1 61 63-142 26-86 (160)
151 COG4976 Predicted methyltransf 96.8 0.0036 7.7E-08 57.4 6.9 108 42-178 126-253 (287)
152 KOG2361 Predicted methyltransf 96.8 0.0039 8.5E-08 57.3 6.9 103 44-147 74-193 (264)
153 KOG1541 Predicted protein carb 96.7 0.017 3.7E-07 52.7 10.7 129 42-176 51-201 (270)
154 TIGR02021 BchM-ChlM magnesium 96.7 0.0087 1.9E-07 53.0 8.9 35 40-75 54-88 (219)
155 COG2933 Predicted SAM-dependen 96.7 0.0022 4.7E-08 59.8 5.0 36 22-57 185-227 (358)
156 PRK10909 rsmD 16S rRNA m(2)G96 96.6 0.0057 1.2E-07 54.5 6.9 86 40-142 52-164 (199)
157 PRK13255 thiopurine S-methyltr 96.6 0.0084 1.8E-07 54.0 8.1 95 40-135 36-153 (218)
158 PF01269 Fibrillarin: Fibrilla 96.6 0.0028 6E-08 57.6 4.9 81 39-137 71-178 (229)
159 PLN02476 O-methyltransferase 96.6 0.0085 1.8E-07 56.2 8.2 83 40-136 117-227 (278)
160 PRK07580 Mg-protoporphyrin IX 96.6 0.0076 1.7E-07 53.2 7.6 35 40-75 62-96 (230)
161 PLN02672 methionine S-methyltr 96.6 0.0075 1.6E-07 65.8 8.8 50 112-163 253-305 (1082)
162 COG2518 Pcm Protein-L-isoaspar 96.6 0.0013 2.9E-08 59.1 2.3 75 39-138 70-170 (209)
163 PLN02585 magnesium protoporphy 96.5 0.014 2.9E-07 55.6 9.0 35 41-76 144-178 (315)
164 PRK13168 rumA 23S rRNA m(5)U19 96.5 0.019 4E-07 56.8 10.0 22 39-60 295-316 (443)
165 COG1041 Predicted DNA modifica 96.4 0.015 3.2E-07 56.1 8.6 127 39-174 195-343 (347)
166 PF00891 Methyltransf_2: O-met 96.3 0.016 3.4E-07 52.2 7.7 86 31-137 91-199 (241)
167 PF05185 PRMT5: PRMT5 arginine 96.3 0.0017 3.7E-08 64.6 1.5 92 41-150 186-314 (448)
168 KOG2904 Predicted methyltransf 96.3 0.034 7.3E-07 52.3 9.8 125 42-167 149-320 (328)
169 KOG1499 Protein arginine N-met 96.2 0.0081 1.8E-07 57.7 5.6 119 40-174 59-208 (346)
170 PRK00536 speE spermidine synth 96.1 0.033 7.1E-07 51.8 8.9 104 40-161 71-199 (262)
171 COG0742 N6-adenine-specific me 96.1 0.019 4.1E-07 50.9 6.7 86 41-142 43-159 (187)
172 KOG2940 Predicted methyltransf 96.0 0.0067 1.5E-07 55.7 3.8 119 36-167 67-205 (325)
173 PRK03522 rumB 23S rRNA methylu 96.0 0.024 5.1E-07 53.6 7.7 33 41-74 173-205 (315)
174 PLN02823 spermine synthase 95.9 0.056 1.2E-06 52.0 9.8 67 88-161 175-250 (336)
175 TIGR00479 rumA 23S rRNA (uraci 95.9 0.035 7.5E-07 54.5 8.7 56 39-98 290-371 (431)
176 PF02390 Methyltransf_4: Putat 95.9 0.014 2.9E-07 51.7 5.2 107 42-152 18-148 (195)
177 KOG1596 Fibrillarin and relate 95.8 0.014 3.1E-07 53.8 5.1 82 39-138 154-262 (317)
178 PF03141 Methyltransf_29: Puta 95.8 0.011 2.3E-07 59.3 4.6 99 29-138 102-220 (506)
179 COG2263 Predicted RNA methylas 95.8 0.016 3.4E-07 51.6 5.0 33 41-73 45-77 (198)
180 TIGR02085 meth_trns_rumB 23S r 95.7 0.041 8.8E-07 53.4 8.2 33 41-74 233-265 (374)
181 PF10294 Methyltransf_16: Puta 95.7 0.043 9.2E-07 47.4 7.4 101 39-152 43-172 (173)
182 COG3963 Phospholipid N-methylt 95.5 0.035 7.7E-07 48.6 6.1 88 40-139 47-158 (194)
183 TIGR00095 RNA methyltransferas 95.5 0.056 1.2E-06 47.5 7.4 86 41-141 49-163 (189)
184 PF05219 DREV: DREV methyltran 95.5 0.039 8.5E-07 51.3 6.6 81 42-137 95-188 (265)
185 PF01596 Methyltransf_3: O-met 95.5 0.031 6.7E-07 50.0 5.8 97 23-136 30-154 (205)
186 PRK00274 ksgA 16S ribosomal RN 95.4 0.015 3.3E-07 53.8 3.9 57 39-97 40-96 (272)
187 PF03602 Cons_hypoth95: Conser 95.4 0.013 2.8E-07 51.4 3.2 87 41-142 42-158 (183)
188 PF06080 DUF938: Protein of un 95.4 0.052 1.1E-06 48.7 7.1 95 29-135 14-139 (204)
189 COG1889 NOP1 Fibrillarin-like 95.4 0.074 1.6E-06 48.0 7.8 99 21-138 57-183 (231)
190 PRK11524 putative methyltransf 95.2 0.13 2.8E-06 47.9 9.4 92 65-163 9-108 (284)
191 TIGR00755 ksgA dimethyladenosi 95.1 0.048 1E-06 49.7 6.0 56 40-97 28-84 (253)
192 COG0421 SpeE Spermidine syntha 95.1 0.16 3.6E-06 47.7 9.5 125 43-177 78-235 (282)
193 PRK11727 23S rRNA mA1618 methy 95.0 0.21 4.7E-06 47.7 10.3 35 41-75 114-149 (321)
194 PF12147 Methyltransf_20: Puta 95.0 0.062 1.3E-06 50.8 6.4 119 22-153 113-266 (311)
195 PF01234 NNMT_PNMT_TEMT: NNMT/ 94.8 0.056 1.2E-06 50.1 5.5 41 89-136 158-198 (256)
196 PF06016 Reovirus_L2: Reovirus 94.4 0.083 1.8E-06 58.0 6.6 170 13-187 466-665 (1289)
197 PRK14896 ksgA 16S ribosomal RN 94.1 0.068 1.5E-06 49.0 4.5 35 39-74 27-61 (258)
198 PF01564 Spermine_synth: Sperm 94.1 0.35 7.6E-06 44.3 9.2 111 41-160 76-218 (246)
199 PF03141 Methyltransf_29: Puta 93.9 0.047 1E-06 54.9 3.3 125 42-177 366-505 (506)
200 KOG2899 Predicted methyltransf 93.9 0.15 3.3E-06 47.2 6.3 44 88-136 165-208 (288)
201 PTZ00338 dimethyladenosine tra 93.7 0.067 1.5E-06 50.4 3.8 22 39-60 34-55 (294)
202 PLN02589 caffeoyl-CoA O-methyl 93.6 0.49 1.1E-05 43.6 9.2 83 40-136 78-189 (247)
203 KOG1500 Protein arginine N-met 93.6 0.062 1.4E-06 51.9 3.3 76 41-134 177-279 (517)
204 PF08123 DOT1: Histone methyla 93.5 0.33 7.1E-06 43.5 7.7 87 30-134 32-155 (205)
205 COG4122 Predicted O-methyltran 93.4 0.47 1E-05 43.1 8.5 82 40-136 58-165 (219)
206 PRK13699 putative methylase; P 93.4 0.56 1.2E-05 42.5 9.0 91 66-165 3-103 (227)
207 KOG3191 Predicted N6-DNA-methy 93.3 1.1 2.4E-05 39.9 10.5 118 42-159 44-191 (209)
208 COG0357 GidB Predicted S-adeno 93.2 0.66 1.4E-05 42.0 9.1 85 42-141 68-173 (215)
209 COG4076 Predicted RNA methylas 93.2 0.062 1.4E-06 48.1 2.4 79 43-140 34-139 (252)
210 PF01170 UPF0020: Putative RNA 93.1 0.31 6.7E-06 42.4 6.7 107 21-134 12-148 (179)
211 PRK05031 tRNA (uracil-5-)-meth 93.1 0.51 1.1E-05 45.6 8.8 16 43-58 208-223 (362)
212 PRK04338 N(2),N(2)-dimethylgua 92.9 0.16 3.4E-06 49.7 5.1 80 41-136 57-157 (382)
213 KOG3420 Predicted RNA methylas 92.6 0.36 7.8E-06 41.7 6.1 73 18-99 23-124 (185)
214 PF02527 GidB: rRNA small subu 92.3 0.15 3.3E-06 44.9 3.6 87 39-142 45-151 (184)
215 PRK13256 thiopurine S-methyltr 92.2 0.48 1E-05 43.1 7.0 99 40-139 42-165 (226)
216 COG0500 SmtA SAM-dependent met 92.1 0.47 1E-05 35.6 5.9 96 45-142 52-160 (257)
217 COG0220 Predicted S-adenosylme 92.0 0.28 6.1E-06 44.7 5.2 36 43-78 50-86 (227)
218 KOG1331 Predicted methyltransf 91.8 0.94 2E-05 42.7 8.4 94 40-141 44-147 (293)
219 KOG3178 Hydroxyindole-O-methyl 91.7 0.67 1.4E-05 44.7 7.5 86 33-138 169-276 (342)
220 KOG1663 O-methyltransferase [S 91.6 0.38 8.3E-06 44.0 5.6 82 41-136 73-182 (237)
221 TIGR03439 methyl_EasF probable 91.1 2.5 5.3E-05 40.5 10.8 38 39-76 74-116 (319)
222 PRK01544 bifunctional N5-gluta 90.9 0.78 1.7E-05 46.4 7.5 39 40-78 346-385 (506)
223 PRK04148 hypothetical protein; 90.8 1.4 3E-05 37.1 7.8 93 41-142 16-114 (134)
224 PF02384 N6_Mtase: N-6 DNA Met 90.6 0.14 3E-06 47.8 1.8 110 39-150 44-201 (311)
225 TIGR02987 met_A_Alw26 type II 90.5 3 6.6E-05 42.1 11.4 31 121-151 180-214 (524)
226 PF04989 CmcI: Cephalosporin h 90.4 0.55 1.2E-05 42.2 5.3 82 42-135 33-145 (206)
227 KOG1661 Protein-L-isoaspartate 89.9 0.056 1.2E-06 48.9 -1.4 97 38-138 79-194 (237)
228 PF02475 Met_10: Met-10+ like- 89.6 0.39 8.5E-06 42.9 3.7 38 38-75 98-136 (200)
229 TIGR02143 trmA_only tRNA (urac 89.3 1.7 3.7E-05 41.8 8.2 16 43-58 199-214 (353)
230 PF05724 TPMT: Thiopurine S-me 89.0 1 2.2E-05 40.6 5.9 35 39-74 35-69 (218)
231 COG4627 Uncharacterized protei 88.4 0.47 1E-05 41.3 3.2 93 44-148 5-97 (185)
232 PF00398 RrnaAD: Ribosomal RNA 87.1 1.1 2.4E-05 41.1 5.2 21 40-60 29-49 (262)
233 COG4798 Predicted methyltransf 86.5 2.1 4.6E-05 38.6 6.3 25 39-63 46-70 (238)
234 PRK00050 16S rRNA m(4)C1402 me 86.3 1.3 2.9E-05 41.9 5.3 43 31-74 10-54 (296)
235 PF01739 CheR: CheR methyltran 85.9 0.95 2.1E-05 40.2 3.9 55 65-136 120-174 (196)
236 COG0030 KsgA Dimethyladenosine 85.5 1.9 4E-05 40.2 5.7 60 31-98 21-104 (259)
237 PF09445 Methyltransf_15: RNA 83.7 1.2 2.5E-05 38.7 3.3 95 43-150 1-132 (163)
238 PF05958 tRNA_U5-meth_tr: tRNA 83.6 1.8 3.9E-05 41.7 4.9 34 26-60 182-215 (352)
239 KOG2360 Proliferation-associat 82.9 1.4 3.1E-05 43.2 3.9 62 40-107 212-302 (413)
240 KOG2187 tRNA uracil-5-methyltr 82.7 2 4.3E-05 43.6 4.9 36 24-59 366-401 (534)
241 KOG2915 tRNA(1-methyladenosine 82.7 5.3 0.00011 37.8 7.4 21 39-59 103-123 (314)
242 COG1352 CheR Methylase of chem 82.3 2 4.3E-05 40.2 4.5 98 13-135 142-239 (268)
243 KOG1269 SAM-dependent methyltr 81.5 0.56 1.2E-05 45.7 0.6 98 40-138 109-216 (364)
244 PF05891 Methyltransf_PK: AdoM 81.2 2 4.4E-05 39.0 4.0 84 42-138 56-162 (218)
245 COG2520 Predicted methyltransf 81.0 20 0.00043 34.7 11.0 103 39-142 186-294 (341)
246 PF01555 N6_N4_Mtase: DNA meth 80.1 3.2 6.9E-05 35.8 4.8 48 90-138 1-57 (231)
247 PRK10611 chemotaxis methyltran 79.2 2.3 4.9E-05 40.1 3.8 40 88-136 222-261 (287)
248 PF13578 Methyltransf_24: Meth 79.1 2.6 5.7E-05 32.6 3.6 54 64-135 50-103 (106)
249 TIGR00308 TRM1 tRNA(guanine-26 78.0 7.8 0.00017 37.9 7.2 79 42-136 45-146 (374)
250 KOG0820 Ribosomal RNA adenine 77.3 3.5 7.5E-05 39.0 4.3 21 39-59 56-76 (315)
251 COG5459 Predicted rRNA methyla 77.0 3.3 7.2E-05 40.5 4.3 19 119-137 207-225 (484)
252 PF13679 Methyltransf_32: Meth 76.5 4.7 0.0001 33.4 4.6 38 39-76 23-65 (141)
253 COG2265 TrmA SAM-dependent met 75.4 5.9 0.00013 39.5 5.7 36 26-61 278-313 (432)
254 KOG0024 Sorbitol dehydrogenase 74.6 8.3 0.00018 37.3 6.2 87 39-142 167-278 (354)
255 PF09243 Rsm22: Mitochondrial 73.5 2.9 6.3E-05 38.8 2.9 27 29-56 22-48 (274)
256 PF00107 ADH_zinc_N: Zinc-bind 73.1 6 0.00013 31.3 4.3 54 70-140 39-92 (130)
257 cd08254 hydroxyacyl_CoA_DH 6-h 72.5 19 0.0004 32.9 8.0 19 119-137 245-263 (338)
258 PF11599 AviRa: RRNA methyltra 70.7 40 0.00087 31.0 9.3 69 65-143 147-219 (246)
259 TIGR03451 mycoS_dep_FDH mycoth 69.8 14 0.00029 34.9 6.6 18 119-136 258-275 (358)
260 PF06962 rRNA_methylase: Putat 69.4 4.7 0.0001 34.1 3.0 53 88-142 45-97 (140)
261 KOG2671 Putative RNA methylase 68.9 19 0.00041 35.3 7.2 92 39-137 206-354 (421)
262 PF06859 Bin3: Bicoid-interact 68.0 0.91 2E-05 37.0 -1.6 58 116-181 23-87 (110)
263 PF07942 N2227: N2227-like pro 67.4 18 0.00038 34.0 6.6 19 116-134 181-199 (270)
264 PF07091 FmrO: Ribosomal RNA m 65.3 19 0.00042 33.4 6.3 64 34-98 98-164 (251)
265 cd08283 FDH_like_1 Glutathione 63.6 27 0.00058 33.4 7.4 19 118-136 287-305 (386)
266 PRK12428 3-alpha-hydroxysteroi 62.7 22 0.00048 31.4 6.2 68 65-135 25-94 (241)
267 PF10354 DUF2431: Domain of un 62.4 35 0.00077 29.3 7.2 69 69-142 59-130 (166)
268 PF04672 Methyltransf_19: S-ad 62.4 44 0.00096 31.3 8.2 82 65-155 123-208 (267)
269 PRK09424 pntA NAD(P) transhydr 62.0 28 0.0006 35.5 7.4 48 5-57 123-180 (509)
270 KOG2920 Predicted methyltransf 61.9 7.1 0.00015 36.8 2.9 28 30-57 103-132 (282)
271 COG0275 Predicted S-adenosylme 59.0 18 0.0004 34.6 5.1 35 114-148 221-255 (314)
272 cd05188 MDR Medium chain reduc 58.5 62 0.0014 28.0 8.3 38 35-72 128-166 (271)
273 cd08261 Zn_ADH7 Alcohol dehydr 58.5 36 0.00077 31.4 7.0 17 119-135 240-256 (337)
274 KOG3201 Uncharacterized conser 58.4 28 0.00061 30.8 5.7 56 87-153 101-157 (201)
275 PF11968 DUF3321: Putative met 57.4 51 0.0011 30.0 7.5 122 25-160 31-180 (219)
276 COG0300 DltE Short-chain dehyd 56.9 48 0.001 31.0 7.4 72 11-103 21-98 (265)
277 PRK11783 rlmL 23S rRNA m(2)G24 56.9 46 0.00099 35.2 8.2 31 24-57 176-206 (702)
278 KOG2352 Predicted spermine/spe 56.4 66 0.0014 32.7 8.8 91 39-138 45-162 (482)
279 cd00315 Cyt_C5_DNA_methylase C 54.6 8.6 0.00019 35.6 2.1 80 43-135 1-109 (275)
280 cd05278 FDH_like Formaldehyde 53.1 55 0.0012 30.1 7.3 17 119-135 249-265 (347)
281 cd08281 liver_ADH_like1 Zinc-d 52.7 41 0.00089 31.8 6.5 18 119-136 272-289 (371)
282 PF05206 TRM13: Methyltransfer 52.7 14 0.00029 34.4 3.1 48 28-75 5-58 (259)
283 KOG3987 Uncharacterized conser 52.6 8.5 0.00018 35.3 1.7 21 42-62 113-133 (288)
284 PRK08177 short chain dehydroge 51.6 73 0.0016 27.5 7.5 37 62-98 44-80 (225)
285 TIGR00006 S-adenosyl-methyltra 51.4 23 0.0005 33.7 4.5 33 116-148 219-251 (305)
286 PF07757 AdoMet_MTase: Predict 51.3 16 0.00035 29.8 2.9 34 40-74 57-90 (112)
287 KOG4022 Dihydropteridine reduc 49.4 46 0.001 29.5 5.6 57 79-135 62-127 (236)
288 KOG1209 1-Acyl dihydroxyaceton 48.0 49 0.0011 30.6 5.8 90 41-134 6-135 (289)
289 PRK00050 16S rRNA m(4)C1402 me 47.6 29 0.00063 32.9 4.5 36 115-150 214-249 (296)
290 KOG2651 rRNA adenine N-6-methy 46.5 17 0.00037 36.0 2.8 37 38-74 150-186 (476)
291 COG1063 Tdh Threonine dehydrog 45.4 91 0.002 29.7 7.6 86 40-142 167-274 (350)
292 PRK06128 oxidoreductase; Provi 43.8 85 0.0018 28.7 7.0 71 65-135 108-189 (300)
293 PRK06079 enoyl-(acyl carrier p 43.5 1.2E+02 0.0027 26.8 7.9 35 64-98 56-92 (252)
294 PRK05884 short chain dehydroge 43.4 1E+02 0.0022 26.9 7.1 34 64-98 45-78 (223)
295 cd08236 sugar_DH NAD(P)-depend 43.3 77 0.0017 29.2 6.7 18 119-136 240-257 (343)
296 PF01795 Methyltransf_5: MraW 43.3 19 0.00041 34.4 2.6 37 116-152 220-256 (310)
297 PRK07806 short chain dehydroge 43.2 46 0.00099 29.1 4.9 35 64-98 57-93 (248)
298 PF03269 DUF268: Caenorhabditi 42.8 15 0.00032 32.3 1.6 54 88-142 62-116 (177)
299 TIGR03201 dearomat_had 6-hydro 42.8 71 0.0015 29.9 6.4 36 39-74 164-200 (349)
300 PLN02586 probable cinnamyl alc 41.7 82 0.0018 29.8 6.7 18 119-136 260-277 (360)
301 PRK07578 short chain dehydroge 41.7 1.5E+02 0.0033 24.9 7.8 67 67-135 35-109 (199)
302 COG3897 Predicted methyltransf 40.9 14 0.00031 33.4 1.2 17 41-57 79-95 (218)
303 TIGR01444 fkbM_fam methyltrans 40.5 11 0.00025 30.3 0.6 32 44-75 1-33 (143)
304 PRK06940 short chain dehydroge 40.4 1.1E+02 0.0024 27.6 7.1 35 65-99 51-86 (275)
305 PRK08594 enoyl-(acyl carrier p 40.1 1.6E+02 0.0035 26.2 8.1 35 64-98 60-96 (257)
306 cd08230 glucose_DH Glucose deh 39.6 1E+02 0.0022 28.8 7.0 18 119-136 251-268 (355)
307 KOG1709 Guanidinoacetate methy 39.4 75 0.0016 29.4 5.6 83 40-141 100-208 (271)
308 PRK12742 oxidoreductase; Provi 38.9 2E+02 0.0044 24.6 8.3 34 64-99 52-85 (237)
309 COG0623 FabI Enoyl-[acyl-carri 38.8 1.2E+02 0.0026 28.3 6.8 75 65-141 58-148 (259)
310 PF12692 Methyltransf_17: S-ad 38.8 47 0.001 28.8 4.0 82 43-135 30-132 (160)
311 COG1064 AdhP Zn-dependent alco 37.9 26 0.00057 33.9 2.6 132 39-178 164-302 (339)
312 COG3510 CmcI Cephalosporin hyd 37.2 1.8E+02 0.0039 26.5 7.5 83 42-136 70-179 (237)
313 cd05285 sorbitol_DH Sorbitol d 36.9 1.1E+02 0.0024 28.3 6.7 18 119-136 247-264 (343)
314 KOG0025 Zn2+-binding dehydroge 36.9 40 0.00087 32.4 3.6 19 39-57 99-117 (354)
315 PRK12746 short chain dehydroge 36.0 2.2E+02 0.0047 24.8 8.1 35 65-99 58-100 (254)
316 PRK07889 enoyl-(acyl carrier p 35.6 1.4E+02 0.003 26.6 6.8 35 64-98 58-94 (256)
317 PRK07533 enoyl-(acyl carrier p 35.2 2E+02 0.0044 25.5 7.9 34 65-98 62-97 (258)
318 PRK08267 short chain dehydroge 35.1 2E+02 0.0043 25.2 7.8 36 64-99 49-87 (260)
319 PRK06196 oxidoreductase; Provi 34.7 1.1E+02 0.0023 28.3 6.1 37 63-99 71-109 (315)
320 COG4262 Predicted spermidine s 33.9 1.3E+02 0.0028 30.1 6.6 91 39-138 287-408 (508)
321 PRK06953 short chain dehydroge 33.8 3E+02 0.0066 23.5 8.7 35 64-98 45-79 (222)
322 cd05281 TDH Threonine dehydrog 33.2 1.5E+02 0.0032 27.4 6.9 18 119-136 244-261 (341)
323 PF10237 N6-adenineMlase: Prob 32.8 1E+02 0.0022 26.6 5.2 87 67-172 68-154 (162)
324 cd08241 QOR1 Quinone oxidoredu 32.6 2.7E+02 0.0059 24.5 8.3 19 38-57 136-154 (323)
325 TIGR02825 B4_12hDH leukotriene 31.7 2E+02 0.0042 26.4 7.4 16 120-135 220-235 (325)
326 PRK06182 short chain dehydroge 31.6 2.1E+02 0.0044 25.5 7.3 36 64-99 47-84 (273)
327 KOG2862 Alanine-glyoxylate ami 31.5 1.1E+02 0.0025 29.7 5.7 27 65-91 118-144 (385)
328 PRK08159 enoyl-(acyl carrier p 31.5 2.6E+02 0.0057 25.1 8.1 34 65-98 62-97 (272)
329 PRK06101 short chain dehydroge 31.0 3.5E+02 0.0077 23.4 9.0 33 64-97 47-79 (240)
330 PRK06603 enoyl-(acyl carrier p 30.9 2.5E+02 0.0055 24.9 7.8 33 66-98 61-95 (260)
331 PRK05693 short chain dehydroge 30.8 3.3E+02 0.0071 24.2 8.5 36 64-99 45-82 (274)
332 PRK07370 enoyl-(acyl carrier p 30.7 1.9E+02 0.0042 25.7 7.0 34 65-98 61-96 (258)
333 PRK07984 enoyl-(acyl carrier p 30.3 1.3E+02 0.0029 27.1 5.9 35 64-98 57-93 (262)
334 TIGR00006 S-adenosyl-methyltra 29.7 1E+02 0.0022 29.4 5.2 21 40-60 19-39 (305)
335 PRK08415 enoyl-(acyl carrier p 29.3 3E+02 0.0064 24.9 8.1 33 66-98 58-92 (274)
336 COG0416 PlsX Fatty acid/phosph 29.2 1E+02 0.0023 29.9 5.1 16 42-57 139-154 (338)
337 PRK08265 short chain dehydroge 28.3 4.1E+02 0.009 23.4 8.7 35 64-98 53-89 (261)
338 PRK07041 short chain dehydroge 28.2 2.6E+02 0.0057 23.8 7.2 34 63-98 45-78 (230)
339 PLN02827 Alcohol dehydrogenase 28.1 1.8E+02 0.0039 27.7 6.7 17 119-135 276-293 (378)
340 PRK03525 crotonobetainyl-CoA:c 27.9 1.2E+02 0.0026 29.8 5.5 34 64-99 65-98 (405)
341 PF05430 Methyltransf_30: S-ad 27.2 1E+02 0.0022 25.3 4.1 54 88-155 49-105 (124)
342 PRK07985 oxidoreductase; Provi 27.1 1.8E+02 0.0039 26.6 6.2 34 65-98 102-137 (294)
343 cd08289 MDR_yhfp_like Yhfp put 27.0 4.4E+02 0.0095 23.7 8.8 19 119-137 225-243 (326)
344 TIGR01472 gmd GDP-mannose 4,6- 27.0 2.7E+02 0.0058 25.8 7.5 34 63-99 55-88 (343)
345 cd08240 6_hydroxyhexanoate_dh_ 27.0 3.7E+02 0.008 24.8 8.4 17 119-135 256-272 (350)
346 PRK05993 short chain dehydroge 26.9 4.4E+02 0.0095 23.5 8.7 36 64-99 48-86 (277)
347 PF00106 adh_short: short chai 26.9 3.1E+02 0.0068 21.9 7.1 37 63-99 52-90 (167)
348 PRK11430 putative CoA-transfer 26.8 1.5E+02 0.0033 28.8 6.0 34 64-99 70-103 (381)
349 PRK12937 short chain dehydroge 26.6 2.5E+02 0.0054 24.1 6.8 35 64-98 56-92 (245)
350 PRK06505 enoyl-(acyl carrier p 25.9 2.8E+02 0.006 25.0 7.2 34 65-98 59-94 (271)
351 PF15147 DUF4578: Domain of un 25.9 26 0.00056 28.8 0.3 9 48-57 5-13 (127)
352 TIGR03589 PseB UDP-N-acetylglu 25.8 2.9E+02 0.0063 25.6 7.5 32 63-99 53-84 (324)
353 cd08255 2-desacetyl-2-hydroxye 25.5 2.3E+02 0.0049 25.0 6.5 17 119-135 172-188 (277)
354 PRK00431 RNase III inhibitor; 24.6 2.8E+02 0.006 23.6 6.6 21 65-98 5-25 (177)
355 PLN02668 indole-3-acetate carb 24.5 42 0.00091 33.1 1.6 21 119-139 219-239 (386)
356 PRK09880 L-idonate 5-dehydroge 24.5 1.6E+02 0.0034 27.4 5.5 18 119-136 248-265 (343)
357 PF10975 DUF2802: Protein of u 24.4 61 0.0013 24.1 2.1 20 254-273 26-45 (70)
358 KOG3115 Methyltransferase-like 24.4 56 0.0012 29.9 2.2 32 43-74 62-94 (249)
359 PRK06701 short chain dehydroge 24.2 3.6E+02 0.0078 24.5 7.7 34 65-98 98-133 (290)
360 PF11899 DUF3419: Protein of u 24.1 1.6E+02 0.0035 28.9 5.6 48 83-140 289-337 (380)
361 TIGR02818 adh_III_F_hyde S-(hy 23.9 2.6E+02 0.0057 26.4 6.9 19 119-137 268-287 (368)
362 COG0604 Qor NADPH:quinone redu 23.7 5.6E+02 0.012 24.2 9.1 95 28-140 129-244 (326)
363 PRK05786 fabG 3-ketoacyl-(acyl 23.1 3.7E+02 0.008 23.0 7.2 35 64-98 54-90 (238)
364 KOG1205 Predicted dehydrogenas 22.7 3.6E+02 0.0079 25.4 7.4 38 64-103 64-105 (282)
365 TIGR02822 adh_fam_2 zinc-bindi 22.7 86 0.0019 29.2 3.3 90 39-137 163-254 (329)
366 TIGR00561 pntA NAD(P) transhyd 22.7 2.4E+02 0.0053 28.9 6.6 46 7-57 124-179 (511)
367 cd08243 quinone_oxidoreductase 22.5 5.3E+02 0.011 22.8 8.3 16 120-135 221-236 (320)
368 COG1088 RfbB dTDP-D-glucose 4, 21.4 1.8E+02 0.0038 28.2 5.0 34 62-98 50-83 (340)
369 PRK12744 short chain dehydroge 21.1 3.4E+02 0.0073 23.8 6.6 35 64-98 62-98 (257)
370 TIGR03366 HpnZ_proposed putati 21.0 5.2E+02 0.011 23.2 8.0 20 118-137 199-218 (280)
371 PRK06997 enoyl-(acyl carrier p 20.9 2.4E+02 0.0052 25.1 5.7 34 65-98 58-93 (260)
372 PRK06500 short chain dehydroge 20.7 3.4E+02 0.0074 23.3 6.5 35 64-98 53-89 (249)
373 PLN02178 cinnamyl-alcohol dehy 20.7 2.1E+02 0.0045 27.4 5.5 18 119-136 255-272 (375)
374 PF08351 DUF1726: Domain of un 20.6 1.5E+02 0.0032 23.0 3.7 38 87-138 9-46 (92)
375 PF03492 Methyltransf_7: SAM d 20.5 50 0.0011 31.7 1.2 23 117-139 163-185 (334)
376 cd05282 ETR_like 2-enoyl thioe 20.5 4.9E+02 0.011 23.3 7.7 14 122-135 222-235 (323)
377 cd08278 benzyl_alcohol_DH Benz 20.4 3.5E+02 0.0075 25.4 6.9 17 119-135 267-283 (365)
378 PRK07326 short chain dehydroge 20.2 3.9E+02 0.0084 22.8 6.7 37 63-99 54-92 (237)
379 cd08235 iditol_2_DH_like L-idi 20.1 3.5E+02 0.0077 24.6 6.8 17 119-135 247-263 (343)
380 cd08263 Zn_ADH10 Alcohol dehyd 20.0 4.9E+02 0.011 24.2 7.9 19 119-137 269-287 (367)
No 1
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=100.00 E-value=1.3e-94 Score=642.08 Aligned_cols=266 Identities=71% Similarity=1.121 Sum_probs=251.9
Q ss_pred CCCCCCCCCchHHHHHHHhCchhHHHHHHHHHHHHcCCcCCCCEEEEEccccccccc-----------------------
Q 023158 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ----------------------- 57 (286)
Q Consensus 1 m~~~~~~~rD~y~r~Ak~~g~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq----------------------- 57 (286)
|||+||||||+|||+||++|||+||||||+|||++|+||++..||||||||||||||
T Consensus 1 MGktskDKRDiYYRlAKe~gwRARSAFKLlqideef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaV 80 (294)
T KOG1099|consen 1 MGKTSKDKRDIYYRLAKENGWRARSAFKLLQIDEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAV 80 (294)
T ss_pred CCCccchhhHHHHHHHHhccchHHhHHHHhhhhhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEE
Confidence 999999999999999999999999999999999999999999999999999999999
Q ss_pred ---ccCCCCCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEE
Q 023158 58 ---PMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 134 (286)
Q Consensus 58 ---~map~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV 134 (286)
+|+|++||.++|+|||+++|++.|+++|+++++|+|+||||||+||+|++|+|+|.||+.+||++++++|||||+||
T Consensus 81 DLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV 160 (294)
T KOG1099|consen 81 DLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFV 160 (294)
T ss_pred ecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeee
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCChHHHHHHHHhcCCeeEeeCCCCCCCCchhhhhhhcCCCCCCCCCCCCcchhhhccCCCCCCCCCCCCCCCCC
Q 023158 135 AKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLLEKVGSPWGGEDQDCSSGWLE 214 (286)
Q Consensus 135 ~Kif~g~~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~yvVc~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (286)
.|+|+|+++..|+.+|+.||.+|.++||+|||++|.|+|+||.||.+|+||.|.+.+|+.+. ..+...++.+
T Consensus 161 aKifRg~~tslLysql~~ff~kv~~~KPrsSR~sSiEaFvvC~~~~pp~g~~P~~~~~~~~~--------~~~~~~~~~~ 232 (294)
T KOG1099|consen 161 AKIFRGRDTSLLYSQLRKFFKKVTCAKPRSSRNSSIEAFVVCLGYCPPEGFIPDLGTPLGDL--------CEDDMAAELE 232 (294)
T ss_pred hhhhccCchHHHHHHHHHHhhceeeecCCccccccceeeeeecccCCccCCCCCCCCcccCc--------cccchhcccc
Confidence 99999999999999999999999999999999999999999999999999999998888644 2333456677
Q ss_pred CCCcceeceeecCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCChhHHHHHHHHHhcccCc
Q 023158 215 GPNKVYIPFLACGDLNGYDSDRSYPLPKVADGTYQSLDPVQPPIAPPYKRALEMKKASSQGI 276 (286)
Q Consensus 215 ~~~~~~~pf~~cgdl~~~d~d~~y~~~~~~~~~~~~~~~~~~p~~~~y~~~~~~~~~~~~~~ 276 (286)
++++.|+||+|||||+|||||++||.. .++.+++++||||||+||||+||++|+.+.+++
T Consensus 233 ~~~~~i~pf~aCgdl~~~Dsd~tYp~~--~~~~s~~~dpvq~p~~p~Yk~al~~k~~~~~~~ 292 (294)
T KOG1099|consen 233 EPDRVIVPFVACGDLGGYDSDRTYPSE--AGESSVSLDPVQPPTAPPYKAALELKSSGNLAK 292 (294)
T ss_pred CCCceecceEEeccccCCCCCCCCccc--cCCccccCCCCCCCCchHHHHHHHHhhcchhhc
Confidence 899999999999999999999999873 345568999999999999999999999887665
No 2
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-52 Score=369.30 Aligned_cols=178 Identities=43% Similarity=0.687 Sum_probs=173.9
Q ss_pred CCCCCchHHHHHHHhCchhHHHHHHHHHHHHcCCcCCCCEEEEEccccccccc------------------ccCCCCCcE
Q 023158 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------------------PMAPIEGVI 66 (286)
Q Consensus 5 ~~~~rD~y~r~Ak~~g~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq------------------~map~~gv~ 66 (286)
.++.+|.||++||++||||||+|||+||+++|++|+++++|+||||||||||| +|.|++||.
T Consensus 9 ~~~~~D~Y~~~Ak~~gyRSRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~ 88 (205)
T COG0293 9 AEHLRDPYYKKAKKEGYRSRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVI 88 (205)
T ss_pred HHhhcCHHHHHHhhccccchHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCce
Confidence 56899999999999999999999999999999999999999999999999999 788999999
Q ss_pred EEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHH
Q 023158 67 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 146 (286)
Q Consensus 67 ~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l 146 (286)
+||+||+++.+.++|.+.+++.++|+|+|||+|+++|++++|++.+++|+..++.+|..+|+|||+||+|+|+|++.+.+
T Consensus 89 ~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~ 168 (205)
T COG0293 89 FLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDL 168 (205)
T ss_pred EEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHH
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeeEeeCCCCCCCCchhhhhhhcCCCCC
Q 023158 147 YCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPP 182 (286)
Q Consensus 147 ~~~l~~~F~~V~~~KP~sSR~~S~E~yvVc~gf~~~ 182 (286)
++.++++|+.|.+.||.+||+.|.|.|+||++|+++
T Consensus 169 l~~~~~~F~~v~~~KP~aSR~~S~E~y~v~~~~~~~ 204 (205)
T COG0293 169 LKALRRLFRKVKIFKPKASRKRSREIYLVAKGFKGK 204 (205)
T ss_pred HHHHHHhhceeEEecCccccCCCceEEEEEeccccC
Confidence 999999999999999999999999999999999875
No 3
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.8e-49 Score=343.12 Aligned_cols=179 Identities=34% Similarity=0.581 Sum_probs=173.5
Q ss_pred CCCCCchHHHHHHHhCchhHHHHHHHHHHHHcCCcCCCCEEEEEccccccccc------------------ccCCCCCcE
Q 023158 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------------------PMAPIEGVI 66 (286)
Q Consensus 5 ~~~~rD~y~r~Ak~~g~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq------------------~map~~gv~ 66 (286)
.|+-+|+|+++||.++||+||||||+||+++|+||+++.+|||+|||||+||| ++.|++|++
T Consensus 33 ~Rql~Dpy~kkAkv~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~ 112 (232)
T KOG4589|consen 33 TRQLKDPYVKKAKVQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGAT 112 (232)
T ss_pred HHhccCHHHHHHHHhhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcc
Confidence 35889999999999999999999999999999999999999999999999999 567889999
Q ss_pred EEEe-eCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHH
Q 023158 67 QVQG-DITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSL 145 (286)
Q Consensus 67 ~i~g-DIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~ 145 (286)
++++ |||++.+..+|.+.+.+.++|+|+|||+|+.||++..||+.+++|+.++|..+...|+|+|+||||+|.|.+...
T Consensus 113 ~i~~~dvtdp~~~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~ 192 (232)
T KOG4589|consen 113 IIQGNDVTDPETYRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEAL 192 (232)
T ss_pred cccccccCCHHHHHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHH
Confidence 9999 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeeEeeCCCCCCCCchhhhhhhcCCCCCC
Q 023158 146 LYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPE 183 (286)
Q Consensus 146 l~~~l~~~F~~V~~~KP~sSR~~S~E~yvVc~gf~~~~ 183 (286)
|...|+.+|+.|+.+||.+||.+|.|.|+||++|++..
T Consensus 193 l~r~l~~~f~~Vk~vKP~Asr~eS~E~y~v~~~~k~~~ 230 (232)
T KOG4589|consen 193 LQRRLQAVFTNVKKVKPDASRDESAETYLVCLNFKGNV 230 (232)
T ss_pred HHHHHHHHhhhcEeeCCccccccccceeeeeeeccCcC
Confidence 99999999999999999999999999999999999864
No 4
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=100.00 E-value=8.7e-44 Score=350.24 Aligned_cols=194 Identities=41% Similarity=0.680 Sum_probs=185.9
Q ss_pred CCC---CCCCCCchHHHHHHHhCchhHHHHHHHHHHHHcCCcCCCCEEEEEccccccccc------------------cc
Q 023158 1 MGK---ASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------------------PM 59 (286)
Q Consensus 1 m~~---~~~~~rD~y~r~Ak~~g~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq------------------~m 59 (286)
||| +.|.+.|.|||+||+.||||||||||+||+.+|.||+++..|||||||||||.| ++
T Consensus 1 MGKk~~~gk~r~Dk~Y~lAke~GyrsRsaFKLlQln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 1 MGKKKKSGKGRLDKYYRLAKELGYRSRSAFKLLQLNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred CCccccCCCccchHHHHHHHHhchhHHHHHHHHHHHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 887 578999999999999999999999999999999999999999999999999999 67
Q ss_pred CCCCCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 60 APIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 60 ap~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
.|+||+..++.|||...+...+...+...++|+||+||+|+|.|.|..|.+.|++|.+.+|.+|+..|+.||+||.|+|+
T Consensus 81 kp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfr 160 (780)
T KOG1098|consen 81 KPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFR 160 (780)
T ss_pred ccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccccc
Confidence 78899999999999988887777777778899999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhcCCeeEeeCCCCCCCCchhhhhhhcCCCCCCCCCCCCcchhh
Q 023158 140 GKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNPKDLHRLL 194 (286)
Q Consensus 140 g~~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~yvVc~gf~~~~~~~~~~~~~~~ 194 (286)
..+...|++.+..+|.+|...||.+||+.|.|.|+||.||..|...+|.+++|.+
T Consensus 161 s~dy~~ll~v~~qLf~kv~~tkp~asr~~saeif~vc~~~l~P~~~dp~~ld~~~ 215 (780)
T KOG1098|consen 161 SEDYNGLLRVFGQLFKKVEATKPAASRSESAEIFVVCLGYLAPKKVDPRLLDPKL 215 (780)
T ss_pred CCcchHHHHHHHHHHHHHHhcCChhhhhhccceeeeeecccCccccCccccCHHH
Confidence 9999999999999999999999999999999999999999999999999998866
No 5
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=100.00 E-value=1.5e-40 Score=296.14 Aligned_cols=177 Identities=33% Similarity=0.510 Sum_probs=164.3
Q ss_pred CCCCCchHHHHHHHhCchhHHHHHHHHHHHHcCCcCCCCEEEEEccccccccc------------------ccCCCCCcE
Q 023158 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ------------------PMAPIEGVI 66 (286)
Q Consensus 5 ~~~~rD~y~r~Ak~~g~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq------------------~map~~gv~ 66 (286)
.++.+|.||++||+++||+|++|||.||+++|++++++.+|||||||||+|++ +|.++++++
T Consensus 15 ~~~~~d~~~~~~~~~~~~~r~~~kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~~~v~ 94 (209)
T PRK11188 15 QEHFSDKYVQQAQKKGLRSRAWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPIVGVD 94 (209)
T ss_pred HHhhcCHHHHHHhhcCCchhHHHhhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCCCCcE
Confidence 34778999999999999999999999999999999999999999999999998 344567899
Q ss_pred EEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHH
Q 023158 67 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 146 (286)
Q Consensus 67 ~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l 146 (286)
++++|+++..+++++.+.+..+.+|+|+||++|+++|.+..|...+..++..+|..+.++|+|||.|++|+|++++..++
T Consensus 95 ~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~ 174 (209)
T PRK11188 95 FLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEY 174 (209)
T ss_pred EEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHH
Confidence 99999999988888888887789999999999999998887877777778899999999999999999999999999999
Q ss_pred HHHHHhcCCeeEeeCCCCCCCCchhhhhhhcCCCC
Q 023158 147 YCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFP 181 (286)
Q Consensus 147 ~~~l~~~F~~V~~~KP~sSR~~S~E~yvVc~gf~~ 181 (286)
+..++.+|.+|.++||.+||.+|.|.|+||+||++
T Consensus 175 l~~l~~~f~~v~~~Kp~ssr~~s~e~~~~~~~~~~ 209 (209)
T PRK11188 175 LREIRSLFTKVKVRKPDSSRARSREVYIVATGRKL 209 (209)
T ss_pred HHHHHhCceEEEEECCccccccCceeEEEeecccC
Confidence 99999999999999999999999999999999974
No 6
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=100.00 E-value=1.8e-40 Score=287.16 Aligned_cols=159 Identities=43% Similarity=0.720 Sum_probs=137.4
Q ss_pred chhHHHHHHHHHHHHcCCcCCC--CEEEEEccccccccc------------------ccCCCCCcEEEEeeCCChhhHHH
Q 023158 21 WRARSAFKLLQIDEEFNIFEGV--KRVVDLCAAPGSWSQ------------------PMAPIEGVIQVQGDITNARTAEV 80 (286)
Q Consensus 21 ~raRsa~KL~eId~~f~l~~~g--~~VLDLgaaPGswSq------------------~map~~gv~~i~gDIt~~~~~~~ 80 (286)
||+||+|||.||+++|++++++ .+||||||||||||| ++.|.+++.++++|+++.++.+.
T Consensus 1 yvsRa~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~ 80 (181)
T PF01728_consen 1 YVSRAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKD 80 (181)
T ss_dssp SSSTHHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHh
Confidence 8999999999999999988765 899999999999999 33445789999999999988877
Q ss_pred HHHhcCC--CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhcCCeeE
Q 023158 81 VIRHFDG--CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVT 158 (286)
Q Consensus 81 i~~~l~~--~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~F~~V~ 158 (286)
+.+.+.. +++|+|+|||+|+++|.++.|++.+++|+..++.+|..+|+|||+||+|+|.+.+...++..++.+|++|+
T Consensus 81 i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~ 160 (181)
T PF01728_consen 81 IRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVK 160 (181)
T ss_dssp GGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEE
T ss_pred hhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEE
Confidence 7777653 68999999999999999999999999999999999999999999999999999887899999999999999
Q ss_pred eeCCCCCCCCchhhhhhhcCC
Q 023158 159 FAKPKSSRNSSIEAFAVCENY 179 (286)
Q Consensus 159 ~~KP~sSR~~S~E~yvVc~gf 179 (286)
++||.+||.+|+|.|+||+||
T Consensus 161 ~~Kp~~sr~~s~E~Ylv~~~f 181 (181)
T PF01728_consen 161 IVKPPSSRSESSEEYLVCRGF 181 (181)
T ss_dssp EEE-TTSBTTCBEEEEESEEE
T ss_pred EEECcCCCCCccEEEEEEcCC
Confidence 999999999999999999997
No 7
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.97 E-value=1.3e-29 Score=220.81 Aligned_cols=170 Identities=36% Similarity=0.665 Sum_probs=153.0
Q ss_pred chHHHHHHHhCchhHHHHHHHHHHHHcCCcCCCCEEEEEccccccccccc---------------C---CCCCcEEEEee
Q 023158 10 DIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPM---------------A---PIEGVIQVQGD 71 (286)
Q Consensus 10 D~y~r~Ak~~g~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~m---------------a---p~~gv~~i~gD 71 (286)
|.||+.|++++||+|.+|||.+++++++.++++.+|||+|||||+++..+ . ..+++.++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~~~~~i~~~~~d 80 (188)
T TIGR00438 1 DFYYQKAKKEKYRSRASFKLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMKPIENVDFIRGD 80 (188)
T ss_pred CHHHHHHhhcCCchhHHHHHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccccCCCceEEEee
Confidence 67999999999999999999999999999999999999999999998721 1 12477888999
Q ss_pred CCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHH
Q 023158 72 ITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 151 (286)
Q Consensus 72 It~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~ 151 (286)
+.+....+.+.+.+.+.++|+|++|++|+.+|.+..++.....+...++..+.++|+|||.|++.+++......++..++
T Consensus 81 ~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~ 160 (188)
T TIGR00438 81 FTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELR 160 (188)
T ss_pred CCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHH
Confidence 99877666666667667899999999988889888888777778889999999999999999999999999999999998
Q ss_pred hcCCeeEeeCCCCCCCCchhhhhhhcCC
Q 023158 152 LFFPVVTFAKPKSSRNSSIEAFAVCENY 179 (286)
Q Consensus 152 ~~F~~V~~~KP~sSR~~S~E~yvVc~gf 179 (286)
..|..+.+.||.+||..|+|.|+||.||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T TIGR00438 161 KLFEKVKVTKPQASRKRSAEVYIVAKRF 188 (188)
T ss_pred hhhceEEEeCCCCCCcccceEEEEEecC
Confidence 8999999999999999999999999997
No 8
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=99.83 E-value=2.8e-21 Score=188.98 Aligned_cols=162 Identities=25% Similarity=0.461 Sum_probs=133.6
Q ss_pred CchhHHHHHHHHHHHHcCCc--CC----C-----------CEEEEEccccccccccc-----------------------
Q 023158 20 GWRARSAFKLLQIDEEFNIF--EG----V-----------KRVVDLCAAPGSWSQPM----------------------- 59 (286)
Q Consensus 20 g~raRsa~KL~eId~~f~l~--~~----g-----------~~VLDLgaaPGswSq~m----------------------- 59 (286)
=|.+|+|.|+..||.-|+++ +| | -..-|+||||||||..+
T Consensus 229 fFlNRAAmKmANmD~i~d~mftNpRdp~g~~lva~~~~eLlYFaDvCAGPGGFSEYvLwRK~w~AKGFGfTL~G~nDFKL 308 (845)
T KOG3673|consen 229 FFLNRAAMKMANMDKIYDWMFTNPRDPLGESLVAENVEELLYFADVCAGPGGFSEYVLWRKFWNAKGFGFTLAGKNDFKL 308 (845)
T ss_pred HHhhHHHHHhhhHHHHHHHHhCCCCCcccCccccccHHHHHHHHhhhcCCCccchhhhhhhhhccccceeEeccCCccch
Confidence 36789999999999999854 11 1 14568999999999921
Q ss_pred -----------CCCCCcEEEEeeCCChhhHHHHHHhc----CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Q 023158 60 -----------APIEGVIQVQGDITNARTAEVVIRHF----DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVT 124 (286)
Q Consensus 60 -----------ap~~gv~~i~gDIt~~~~~~~i~~~l----~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~ 124 (286)
.+..|+ --.|||+++.++..+..+. .+..+++.++||...+-|..++++.++-+|.++.+-.|+
T Consensus 309 ekF~aaS~e~FetfYG~-k~dGdi~dp~Nidsl~~~i~~~T~~~GVHf~MADGGFSVEGQeNiQEILSKqLyLCQfL~aL 387 (845)
T KOG3673|consen 309 EKFTAASQEFFETFYGT-KDDGDIMDPVNIDSLEAHISRGTSGLGVHFMMADGGFSVEGQENIQEILSKQLYLCQFLVAL 387 (845)
T ss_pred hhhhhcCHHhhhccccc-cCCCCcCCccchHHHHHHHhcCCCCcceEEEEecCCccccchhhHHHHHHHHHHHHHHHHHh
Confidence 123342 2368999998876655443 456799999999999999999999999999999999999
Q ss_pred hcccCCcEEEEEEccCCC--hHHHHHHHHhcCCeeEeeCCCCCCCCchhhhhhhcCCCCC
Q 023158 125 HVLKEGGKFIAKIFRGKD--TSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPP 182 (286)
Q Consensus 125 ~vLkpGG~fV~Kif~g~~--~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~yvVc~gf~~~ 182 (286)
.++|+||+|+||+|.-.+ ..-|...|..+|+.|.++||.+||+.++|+|+||+|.+..
T Consensus 388 ~IvR~gG~F~CK~FDlFTPFSVGLvYLmy~Cfq~v~l~KP~tSRPANSERYivCKglr~~ 447 (845)
T KOG3673|consen 388 CIVREGGNFFCKLFDLFTPFSVGLVYLMYVCFQSVSLHKPHTSRPANSERYIVCKGLRKE 447 (845)
T ss_pred eeeecCCeEEEeeecccCcchhhHHHHHHHHHHHhhcccCCCCCCCCCceeEEecchhhh
Confidence 999999999999997554 4456778888999999999999999999999999998754
No 9
>KOG3674 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=99.80 E-value=4.3e-20 Score=179.10 Aligned_cols=166 Identities=28% Similarity=0.398 Sum_probs=133.9
Q ss_pred hCchhHHHHHHHHHHHHcCCc-CCCC--EEEEEccccccccc----------------------ccCCC-CC--------
Q 023158 19 EGWRARSAFKLLQIDEEFNIF-EGVK--RVVDLCAAPGSWSQ----------------------PMAPI-EG-------- 64 (286)
Q Consensus 19 ~g~raRsa~KL~eId~~f~l~-~~g~--~VLDLgaaPGswSq----------------------~map~-~g-------- 64 (286)
......|+.||.||.+.|.+. +++. .-+.||.|||.|.. .+.|+ +|
T Consensus 107 ae~~T~AwcKl~Eil~~fpl~~~ea~~inS~HLCEaPGaFIaslnhyL~s~r~k~~~~W~W~anTLNPY~E~n~~~~mi~ 186 (696)
T KOG3674|consen 107 AENVTKAWCKLCEILEVFPLDIFEASSINSFHLCEAPGAFIASLNHYLMSSRGKNMSYWKWGANTLNPYFENNSCFDMII 186 (696)
T ss_pred HHHHHHHHHHHHHHHHhcCccccccccccceeeecCccHHHHHHHHHHHhccCCccceeeeccCccCcccccchHHHHhc
Confidence 345678999999999999976 4544 78999999999977 12221 00
Q ss_pred --------c------EEEEeeCCChhhHHHHHH--hcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhccc
Q 023158 65 --------V------IQVQGDITNARTAEVVIR--HFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLK 128 (286)
Q Consensus 65 --------v------~~i~gDIt~~~~~~~i~~--~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLk 128 (286)
. .-..|||.+.....-+.+ .+. +.+|||.+||+.|+.|....+|.+...|..+....|+++|+
T Consensus 187 DDr~I~~Tld~WyFgpd~tGdi~~~~~~~~l~~~v~~~-gtvdLVTADGS~dcqg~pgeqE~iVssL~~aEV~~AL~~L~ 265 (696)
T KOG3674|consen 187 DDRHIRPTLDQWYFGPDDTGDIEKFTEEYLLKQEVKLA-GTVDLVTADGSTDCQGKPGEQESIVSSLISAEVEVALKLLR 265 (696)
T ss_pred cchhhhccccceeeCCCCCccHHHHHHHHHHHHHHHhh-ceEEEEecCCccccCCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 0 012577776544433333 233 58999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEccCCC--hHHHHHHHHhcCCeeEeeCCCCCCCCchhhhhhhcCCCCCCCC
Q 023158 129 EGGKFIAKIFRGKD--TSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGF 185 (286)
Q Consensus 129 pGG~fV~Kif~g~~--~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~yvVc~gf~~~~~~ 185 (286)
.||+||+|+|+-.+ ...|...|...|++|+++||.+||+.++|.||||.||++.+..
T Consensus 266 ~gG~filKmft~fe~cS~~lmylLnc~F~~Vh~fKPatSk~GnSEvYVvCl~yK~~~~l 324 (696)
T KOG3674|consen 266 RGGRFILKMFTFFEKCSRDLMYLLNCNFSSVHAFKPATSKPGNSEVYVVCLGYKDHPDL 324 (696)
T ss_pred cCCeehHHHHHHHHHhhHHHHHHHHhhHhhhhccccccCCCCCceEEEEecccCCCccc
Confidence 99999999997543 5678888999999999999999999999999999999887654
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.09 E-value=1.6e-10 Score=105.07 Aligned_cols=112 Identities=23% Similarity=0.321 Sum_probs=62.2
Q ss_pred cCCCCEEEEEcccccccccccCCC--CCcEEEEeeCCChhhHHHHHHhcC---CCCccEEEeCCC----C--------CC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPI--EGVIQVQGDITNARTAEVVIRHFD---GCKADLVVCDGA----P--------DV 101 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~--~gv~~i~gDIt~~~~~~~i~~~l~---~~~~DlVlsDga----p--------~~ 101 (286)
.++|.+|||||||||.++..++.. ++..++..|++..+. +...+++. ...+++|.+|+. + -.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML-~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~ 123 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGML-EVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCS 123 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHH-HHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHH-HHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHH
Confidence 367889999999999999866543 345777888887543 22222211 113444444432 0 02
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhcCCee
Q 023158 102 TGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVV 157 (286)
Q Consensus 102 tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~F~~V 157 (286)
.|++++.. ...+|.++.|+|||||.|++--|..+....+...++.+|..|
T Consensus 124 fglrn~~d------~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~i 173 (233)
T PF01209_consen 124 FGLRNFPD------RERALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYI 173 (233)
T ss_dssp S-GGG-SS------HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH-----
T ss_pred hhHHhhCC------HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeeccc
Confidence 35666543 256899999999999999998888777666666666666654
No 11
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.06 E-value=3.5e-10 Score=103.22 Aligned_cols=105 Identities=23% Similarity=0.286 Sum_probs=72.8
Q ss_pred CCCCEEEEEcccccccccccCCCC-CcEEEEeeCCChhhHHHHHHhcCC---CCccEEEeCCC--C----------CCCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIE-GVIQVQGDITNARTAEVVIRHFDG---CKADLVVCDGA--P----------DVTG 103 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~-gv~~i~gDIt~~~~~~~i~~~l~~---~~~DlVlsDga--p----------~~tG 103 (286)
.+|.+|||+|||||-|+..++... ...++..||++.+ ++...+++.. ..+.+|.+|+. | ...|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~M-L~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESM-LEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHH-HHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 489999999999999999665432 3577788888754 3333333321 11556666653 1 2357
Q ss_pred CCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHH
Q 023158 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 151 (286)
Q Consensus 104 ~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~ 151 (286)
++++++. ..+|.++.|||||||.+++--|..++...+...+.
T Consensus 129 lrnv~d~------~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~ 170 (238)
T COG2226 129 LRNVTDI------DKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYI 170 (238)
T ss_pred hhcCCCH------HHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHH
Confidence 7777654 78999999999999999999998877665544443
No 12
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=99.00 E-value=2.2e-09 Score=102.30 Aligned_cols=79 Identities=27% Similarity=0.335 Sum_probs=53.1
Q ss_pred HhCchhHHHHHHHHHHHHc-------CCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHH-------
Q 023158 18 EEGWRARSAFKLLQIDEEF-------NIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIR------- 83 (286)
Q Consensus 18 ~~g~raRsa~KL~eId~~f-------~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~------- 83 (286)
..+-+|||+|||.|+...| .++.+|+++|||||+|||||+-+... |..++..|.... ...+..
T Consensus 181 p~~apSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~l--~~~L~~~~~V~h~ 257 (357)
T PRK11760 181 PADAPSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGPM--AQSLMDTGQVEHL 257 (357)
T ss_pred CCCCCChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechhc--CHhhhCCCCEEEE
Confidence 3467899999999995555 46789999999999999999954432 334444442221 111110
Q ss_pred ------hcC-CCCccEEEeCCCC
Q 023158 84 ------HFD-GCKADLVVCDGAP 99 (286)
Q Consensus 84 ------~l~-~~~~DlVlsDgap 99 (286)
... .+.+|+|+||+..
T Consensus 258 ~~d~fr~~p~~~~vDwvVcDmve 280 (357)
T PRK11760 258 RADGFKFRPPRKNVDWLVCDMVE 280 (357)
T ss_pred eccCcccCCCCCCCCEEEEeccc
Confidence 011 4579999999963
No 13
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.93 E-value=2.6e-09 Score=105.22 Aligned_cols=121 Identities=24% Similarity=0.322 Sum_probs=78.0
Q ss_pred CCCCEEEEEcccccccccccCCC--CCcEEEEeeCCChhhHHHHHH----------------------hcCCCCccEEEe
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPI--EGVIQVQGDITNARTAEVVIR----------------------HFDGCKADLVVC 95 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~--~gv~~i~gDIt~~~~~~~i~~----------------------~l~~~~~DlVls 95 (286)
+++.+|||+|||||+++..++.. ++..++..|+..... +.+.+ .+. +.||+|++
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l-~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~-~~fD~Vl~ 326 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKL-KLIEENAKRLGLTNIETKALDARKVHEKFA-EKFDKILV 326 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCeEEEEeCCcccccchhc-ccCCEEEE
Confidence 57889999999999999855432 234556666654322 11110 111 46999999
Q ss_pred CCCCCCCCCCc-----------ccHHHHHHHHHHHHHHHHhcccCCcEEE---EEEccCCChHHHHHHHHh--cCCeeEe
Q 023158 96 DGAPDVTGLHD-----------MDEFVQSQLILAGLTVVTHVLKEGGKFI---AKIFRGKDTSLLYCQLKL--FFPVVTF 159 (286)
Q Consensus 96 Dgap~~tG~~~-----------~D~~~~~~L~~aaL~~a~~vLkpGG~fV---~Kif~g~~~~~l~~~l~~--~F~~V~~ 159 (286)
|+.....|... .+......++...|..+.++|||||.+| |+++..++...+...++. .|+.+.+
T Consensus 327 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~~~ 406 (444)
T PRK14902 327 DAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELVPL 406 (444)
T ss_pred cCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEecc
Confidence 97544344311 1112344567888999999999999999 666777776666677776 3655554
Q ss_pred eCC
Q 023158 160 AKP 162 (286)
Q Consensus 160 ~KP 162 (286)
.+|
T Consensus 407 ~~~ 409 (444)
T PRK14902 407 QHE 409 (444)
T ss_pred ccc
Confidence 433
No 14
>PTZ00146 fibrillarin; Provisional
Probab=98.90 E-value=1.2e-08 Score=95.58 Aligned_cols=85 Identities=21% Similarity=0.227 Sum_probs=53.3
Q ss_pred cCCCCEEEEEcccccccccccCCCCC--cEEEEeeCCChh---hHHHHH------------------HhcCCCCccEEEe
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIEG--VIQVQGDITNAR---TAEVVI------------------RHFDGCKADLVVC 95 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~g--v~~i~gDIt~~~---~~~~i~------------------~~l~~~~~DlVls 95 (286)
++++++|||||||||.|++.++.+-| -.++..|+.... .++... ..+ ...+|+|++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~-~~~vDvV~~ 208 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRML-VPMVDVIFA 208 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcc-cCCCCEEEE
Confidence 68999999999999999996554321 234555555321 110000 001 136899999
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEE
Q 023158 96 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 96 Dgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 137 (286)
|++. .|+. ..++..+.++|||||.|++++
T Consensus 209 Dva~-------pdq~------~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 209 DVAQ-------PDQA------RIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred eCCC-------cchH------HHHHHHHHHhccCCCEEEEEE
Confidence 9852 2321 233445889999999999864
No 15
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.8e-08 Score=96.98 Aligned_cols=113 Identities=27% Similarity=0.354 Sum_probs=81.2
Q ss_pred CCCCEEEEEcccccccccccCCC---CCcEEEEeeCCChhhHHHHHH---hc--------------------CCCCccEE
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPI---EGVIQVQGDITNARTAEVVIR---HF--------------------DGCKADLV 93 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~---~gv~~i~gDIt~~~~~~~i~~---~l--------------------~~~~~DlV 93 (286)
++|.+|||+||||||.|..++.+ .|.+++..|+..... +.+.+ ++ .+.+||.|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-KRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-HHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 67999999999999999855432 466778888887533 22221 11 11259999
Q ss_pred EeCCCCCCCCCCcc-----------cHHHHHHHHHHHHHHHHhcccCCcEEE---EEEccCCChHHHHHHHHhc
Q 023158 94 VCDGAPDVTGLHDM-----------DEFVQSQLILAGLTVVTHVLKEGGKFI---AKIFRGKDTSLLYCQLKLF 153 (286)
Q Consensus 94 lsDgap~~tG~~~~-----------D~~~~~~L~~aaL~~a~~vLkpGG~fV---~Kif~g~~~~~l~~~l~~~ 153 (286)
+.|..+..+|.... |-.....++...|..|.++|||||.+| |.++.-++...+.+.|+.+
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~ 307 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERH 307 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhC
Confidence 99998877776421 222456778888999999999999999 5556666777777878774
No 16
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.82 E-value=1.4e-08 Score=99.57 Aligned_cols=113 Identities=21% Similarity=0.265 Sum_probs=75.1
Q ss_pred CCCCEEEEEcccccccccccCCC-CCcEEEEeeCCChhhH---HHHHH-----hc--------------CCCCccEEEeC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPI-EGVIQVQGDITNARTA---EVVIR-----HF--------------DGCKADLVVCD 96 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~-~gv~~i~gDIt~~~~~---~~i~~-----~l--------------~~~~~DlVlsD 96 (286)
++|.+|||+|||||+++..++.. ++..++..|+...... +.+.. .. ..+.||.|++|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 57899999999999999865542 2356777788765321 11110 00 12469999999
Q ss_pred CCCCCCCCCc-c----------cHHHHHHHHHHHHHHHHhcccCCcEEEEEEc---cCCChHHHHHHHHh
Q 023158 97 GAPDVTGLHD-M----------DEFVQSQLILAGLTVVTHVLKEGGKFIAKIF---RGKDTSLLYCQLKL 152 (286)
Q Consensus 97 gap~~tG~~~-~----------D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif---~g~~~~~l~~~l~~ 152 (286)
+.+..+|... . +-.....++...|..+.++|||||.+|..+. ..++...+.+.|+.
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQE 386 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHh
Confidence 8877666521 1 1123345678889999999999999996654 34566666666665
No 17
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.80 E-value=1.7e-08 Score=92.95 Aligned_cols=112 Identities=21% Similarity=0.265 Sum_probs=69.9
Q ss_pred CCCCEEEEEcccccccccccCCCC--CcEEEEeeCCChhhHHHHHHhc--------------------CCCCccEEEeCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIE--GVIQVQGDITNARTAEVVIRHF--------------------DGCKADLVVCDG 97 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~--gv~~i~gDIt~~~~~~~i~~~l--------------------~~~~~DlVlsDg 97 (286)
++|.+|||+|||||++|..++..- ...++..|+..... +.+.+.+ ..+.||.|++|.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l-~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRT-KVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHH-HHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 578999999999999998554321 23566777766432 1111110 123599999998
Q ss_pred CCCCCCCCcccH-----------HHHHHHHHHHHHHHHhcccCCcEEEEEEcc--CCChH-HHHHHHHh
Q 023158 98 APDVTGLHDMDE-----------FVQSQLILAGLTVVTHVLKEGGKFIAKIFR--GKDTS-LLYCQLKL 152 (286)
Q Consensus 98 ap~~tG~~~~D~-----------~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~--g~~~~-~l~~~l~~ 152 (286)
.+..+|....+. .....++...|..+.++|||||.+|-.+-. ..+.+ .+.+.|+.
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEK 217 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHh
Confidence 765555432221 123456677899999999999999866432 33333 44455554
No 18
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.78 E-value=1.3e-08 Score=94.86 Aligned_cols=106 Identities=21% Similarity=0.211 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhc---C---------------C
Q 023158 26 AFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHF---D---------------G 87 (286)
Q Consensus 26 a~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l---~---------------~ 87 (286)
.-|+-.+.++++ +++|++|||+|||.|+.+..++...||+++..+++.... +...+.+ + .
T Consensus 58 ~~k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~-~~~~~r~~~~gl~~~v~v~l~d~rd~~ 135 (283)
T COG2230 58 RAKLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQL-AYAEKRIAARGLEDNVEVRLQDYRDFE 135 (283)
T ss_pred HHHHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHH-HHHHHHHHHcCCCcccEEEeccccccc
Confidence 356667777776 689999999999999999999988899999999987533 2222211 1 1
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 88 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 88 ~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
++||-|+|=|+...-|.++.+ .-+..+.++|+|||.+++-.+...+
T Consensus 136 e~fDrIvSvgmfEhvg~~~~~---------~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 136 EPFDRIVSVGMFEHVGKENYD---------DFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred cccceeeehhhHHHhCcccHH---------HHHHHHHhhcCCCceEEEEEecCCC
Confidence 336666665554444444433 3367889999999999988876654
No 19
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.77 E-value=2.3e-08 Score=98.12 Aligned_cols=112 Identities=24% Similarity=0.294 Sum_probs=73.1
Q ss_pred CCCCEEEEEcccccccccccCCC-CCcEEEEeeCCChhhHHHHHH---------------------hcCCCCccEEEeCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPI-EGVIQVQGDITNARTAEVVIR---------------------HFDGCKADLVVCDG 97 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~-~gv~~i~gDIt~~~~~~~i~~---------------------~l~~~~~DlVlsDg 97 (286)
++|.+|||+|||||+++..++.. ++.+++..|+...... .+.+ .+..++||+|++|.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~-~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLE-RVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHH-HHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 57899999999999999855432 2345555566543221 1110 11235699999998
Q ss_pred CCCCCCCCcc--------c---HHHHHHHHHHHHHHHHhcccCCcEEE---EEEccCCChHHHHHHHHh
Q 023158 98 APDVTGLHDM--------D---EFVQSQLILAGLTVVTHVLKEGGKFI---AKIFRGKDTSLLYCQLKL 152 (286)
Q Consensus 98 ap~~tG~~~~--------D---~~~~~~L~~aaL~~a~~vLkpGG~fV---~Kif~g~~~~~l~~~l~~ 152 (286)
.+..+|.... . ......++...|..+.++|||||.+| |.++..++...+...++.
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~ 390 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLAR 390 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHh
Confidence 7665554211 1 11223556788999999999999999 455677777777677765
No 20
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.75 E-value=3.3e-08 Score=97.32 Aligned_cols=112 Identities=21% Similarity=0.264 Sum_probs=72.6
Q ss_pred CCCCEEEEEcccccccccccCCC--CCcEEEEeeCCChhhHHHHHHh---------------------cCCCCccEEEeC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPI--EGVIQVQGDITNARTAEVVIRH---------------------FDGCKADLVVCD 96 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~--~gv~~i~gDIt~~~~~~~i~~~---------------------l~~~~~DlVlsD 96 (286)
++|.+|||+|||||+.|..++.. ++..++..|+..... +.+.+. +..+.||.|++|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl-~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI-QLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHH-HHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 57899999999999998755543 234566667665432 111110 112469999999
Q ss_pred CCCCCCCCCcccH-----------HHHHHHHHHHHHHHHhcccCCcEEEEEEc---cCCChHHHHHHHHh
Q 023158 97 GAPDVTGLHDMDE-----------FVQSQLILAGLTVVTHVLKEGGKFIAKIF---RGKDTSLLYCQLKL 152 (286)
Q Consensus 97 gap~~tG~~~~D~-----------~~~~~L~~aaL~~a~~vLkpGG~fV~Kif---~g~~~~~l~~~l~~ 152 (286)
..+..+|....+. ....+++...|..+.++|||||.+|..+- ..++...+.+.|..
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 8776666532111 12345678889999999999999986654 33445555566654
No 21
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.73 E-value=2.8e-08 Score=97.73 Aligned_cols=113 Identities=18% Similarity=0.149 Sum_probs=71.6
Q ss_pred CCCCEEEEEcccccccccccCCC--CCcEEEEeeCCChhhHHHHHHh------------------------cCCCCccEE
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPI--EGVIQVQGDITNARTAEVVIRH------------------------FDGCKADLV 93 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~--~gv~~i~gDIt~~~~~~~i~~~------------------------l~~~~~DlV 93 (286)
++|.+|||+|||||+++..++.. ...+++..|+..... +.+.+. +..+.||.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl-~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL-KKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH-HHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 57899999999999999855432 123555666654322 111110 012469999
Q ss_pred EeCCCCCCCCCCc--cc---------HHHHHHHHHHHHHHHHhcccCCcEEEEE---EccCCChHHHHHHHHhc
Q 023158 94 VCDGAPDVTGLHD--MD---------EFVQSQLILAGLTVVTHVLKEGGKFIAK---IFRGKDTSLLYCQLKLF 153 (286)
Q Consensus 94 lsDgap~~tG~~~--~D---------~~~~~~L~~aaL~~a~~vLkpGG~fV~K---if~g~~~~~l~~~l~~~ 153 (286)
++|..+..+|... .| -.....++...|..+.++|||||.+|.. ++..++...+.+.|+.+
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~ 403 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARH 403 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 9998654444311 11 1123455688899999999999999944 44556666677777663
No 22
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.66 E-value=2.9e-07 Score=82.04 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=64.5
Q ss_pred cCCCCEEEEEcccccccccccCCC--CCcEEEEeeCCChhhHHHHHHh--------------------cCCCCccEEEeC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPI--EGVIQVQGDITNARTAEVVIRH--------------------FDGCKADLVVCD 96 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~--~gv~~i~gDIt~~~~~~~i~~~--------------------l~~~~~DlVlsD 96 (286)
++++.+|||+|||+|.|+..++.. ++..++..|+.... ++...+. +..+++|+|++.
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~-~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 121 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENM-LSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIG 121 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHH-HHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEe
Confidence 367899999999999999876532 45677778886543 2111111 123467877776
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHH
Q 023158 97 GAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 150 (286)
Q Consensus 97 gap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l 150 (286)
... +..... ..++..+.++|+|||.+++-.+...+...+...+
T Consensus 122 ~~l-----~~~~~~------~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~ 164 (231)
T TIGR02752 122 FGL-----RNVPDY------MQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLY 164 (231)
T ss_pred ccc-----ccCCCH------HHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHH
Confidence 432 222222 4567889999999999998766655554444433
No 23
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.66 E-value=5.1e-08 Score=97.00 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=72.7
Q ss_pred CCCCEEEEEcccccccccccCCCC--CcEEEEeeCCChhhH--HHHHHhcC------------------CCCccEEEeCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIE--GVIQVQGDITNARTA--EVVIRHFD------------------GCKADLVVCDG 97 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~--gv~~i~gDIt~~~~~--~~i~~~l~------------------~~~~DlVlsDg 97 (286)
++|.+|||+||||||.|..++..- .-.++..|+...... .+-+++++ .+.||.|+.|.
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 689999999999999998654321 124556666654221 11111110 14699999999
Q ss_pred CCCCCCCCcccH-----------HHHHHHHHHHHHHHHhcccCCcEEEEEE--cc-CCChHHHHHHHHhc
Q 023158 98 APDVTGLHDMDE-----------FVQSQLILAGLTVVTHVLKEGGKFIAKI--FR-GKDTSLLYCQLKLF 153 (286)
Q Consensus 98 ap~~tG~~~~D~-----------~~~~~L~~aaL~~a~~vLkpGG~fV~Ki--f~-g~~~~~l~~~l~~~ 153 (286)
.+...|....++ ....+++...|..|.++|||||++|-.+ |. .++...+.+.|+.+
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~ 261 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETY 261 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 776666533222 1345777888999999999999998443 33 34444455666654
No 24
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.65 E-value=5.9e-08 Score=88.11 Aligned_cols=62 Identities=24% Similarity=0.187 Sum_probs=51.8
Q ss_pred chhHHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHH
Q 023158 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVI 82 (286)
Q Consensus 21 ~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~ 82 (286)
|++|+++||.++.+.|++...+.+|||+|||||+||+.++....-.++..|+...+....+.
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~ 116 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR 116 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh
Confidence 99999999999999999877889999999999999998876523467888998865554443
No 25
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.1e-07 Score=86.43 Aligned_cols=101 Identities=24% Similarity=0.344 Sum_probs=71.8
Q ss_pred HHhCchhHHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCC----------------------CCCcEEEE-eeCC
Q 023158 17 KEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAP----------------------IEGVIQVQ-GDIT 73 (286)
Q Consensus 17 k~~g~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map----------------------~~gv~~i~-gDIt 73 (286)
.+..|+||.++||..+.+.|++.-++..+||+|+.+|||++-+-. -+.|+.+. .|+.
T Consensus 55 ~~~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r 134 (245)
T COG1189 55 EEQPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVR 134 (245)
T ss_pred cCcCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChh
Confidence 367899999999999999999999999999999999999992211 12333321 2222
Q ss_pred ChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEE
Q 023158 74 NARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 74 ~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 137 (286)
.... +.+. +..|+++||.+. +++ ..+|..+..+|++||-++.-+
T Consensus 135 ~l~~-----~~~~-~~~d~~v~DvSF-----------ISL---~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 135 YLTP-----EDFT-EKPDLIVIDVSF-----------ISL---KLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred hCCH-----HHcc-cCCCeEEEEeeh-----------hhH---HHHHHHHHHhcCCCceEEEEe
Confidence 2211 2333 379999999864 222 445666778999999888644
No 26
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.65 E-value=3.5e-07 Score=82.83 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=70.1
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHh---------------cCCCCccEEEeCCCCCCCCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRH---------------FDGCKADLVVCDGAPDVTGL 104 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~---------------l~~~~~DlVlsDgap~~tG~ 104 (286)
.++.+|||+|||+|.+++.++. .|..++..|+.... ++...+. +..+.||+|+|..+..+.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~~D~s~~~-l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~~-- 116 (251)
T PRK10258 41 RKFTHVLDAGCGPGWMSRYWRE-RGSQVTALDLSPPM-LAQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWC-- 116 (251)
T ss_pred cCCCeEEEeeCCCCHHHHHHHH-cCCeEEEEECCHHH-HHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEECchhhhc--
Confidence 3567999999999999887654 36677777876543 2222111 223568888887654321
Q ss_pred CcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHh
Q 023158 105 HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 152 (286)
Q Consensus 105 ~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~ 152 (286)
.| ...++..+.++|+|||.|++.+|...+..++...+..
T Consensus 117 --~d-------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~ 155 (251)
T PRK10258 117 --GN-------LSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQA 155 (251)
T ss_pred --CC-------HHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHH
Confidence 12 2567888999999999999999988887777766544
No 27
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.63 E-value=5.1e-08 Score=76.71 Aligned_cols=89 Identities=28% Similarity=0.296 Sum_probs=57.1
Q ss_pred CCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHHHHhc---------------------CCCCccEEEeCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVVIRHF---------------------DGCKADLVVCDGA 98 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i~~~l---------------------~~~~~DlVlsDga 98 (286)
|+.+|||||||+|.++..++. .++.+++..|+... .++...+.+ ...+||+|++.+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~- 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPE-MLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG- 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHH-HHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS-
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHH-HHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC-
Confidence 578999999999999996665 35666666676543 222222221 124588888876
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEE
Q 023158 99 PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 99 p~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 137 (286)
. + .+..-+ ..-...++..+.+.|+|||.||+..
T Consensus 79 ~--~-~~~~~~---~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 F--T-LHFLLP---LDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp G--S-GGGCCH---HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C--c-cccccc---hhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 1 0 111111 1334667888999999999999753
No 28
>PRK04266 fibrillarin; Provisional
Probab=98.62 E-value=8.3e-08 Score=86.90 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=54.1
Q ss_pred cCCCCEEEEEcccccccccccCCCC-CcEEEEeeCCChhhHHHHHH----------------------hcCCCCccEEEe
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIE-GVIQVQGDITNARTAEVVIR----------------------HFDGCKADLVVC 95 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~-gv~~i~gDIt~~~~~~~i~~----------------------~l~~~~~DlVls 95 (286)
++++.+|||+|||||.|+..++..- +..++..|+...+ ++.+.+ .+. .++|+|++
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~m-l~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRP-MRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHH-HHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEE
Confidence 5688999999999999999655432 2245555665531 111100 111 35888888
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 96 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 96 Dgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
|++. .+. ...++..+.++|||||.|++.+.
T Consensus 148 d~~~-------p~~------~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 148 DVAQ-------PNQ------AEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CCCC-------hhH------HHHHHHHHHHhcCCCcEEEEEEe
Confidence 8641 111 13467889999999999998543
No 29
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.61 E-value=1.5e-07 Score=86.56 Aligned_cols=110 Identities=19% Similarity=0.173 Sum_probs=72.3
Q ss_pred CCCEEEEEcccccccccccCC-------CCCcEEEEeeCCChhhHHHHHHh-----c-CCCCccEEEeCCC----C----
Q 023158 41 GVKRVVDLCAAPGSWSQPMAP-------IEGVIQVQGDITNARTAEVVIRH-----F-DGCKADLVVCDGA----P---- 99 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map-------~~gv~~i~gDIt~~~~~~~i~~~-----l-~~~~~DlVlsDga----p---- 99 (286)
.+++|||+|||+|..+..+-. ..+-++.-.||...+.. .-.++ + ....+-.|.+|+. |
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~-vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLA-VGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHH-HHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 479999999999998873321 12346677788775432 21111 1 1112334444542 1
Q ss_pred ----CCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhcCCee
Q 023158 100 ----DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVV 157 (286)
Q Consensus 100 ----~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~F~~V 157 (286)
...|+++.-+ +..+|++|+|||||||.|.|-.|...+.+.+.+....++-.|
T Consensus 179 D~yTiafGIRN~th------~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTH------IQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred eeEEEecceecCCC------HHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 1245666544 378999999999999999999999887777777766666666
No 30
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.61 E-value=1.2e-07 Score=93.56 Aligned_cols=113 Identities=22% Similarity=0.199 Sum_probs=72.0
Q ss_pred CCCCEEEEEcccccccccccCCC--CCcEEEEeeCCChhhHHHHHHhc-------------------CCCCccEEEeCCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPI--EGVIQVQGDITNARTAEVVIRHF-------------------DGCKADLVVCDGA 98 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~--~gv~~i~gDIt~~~~~~~i~~~l-------------------~~~~~DlVlsDga 98 (286)
.+|.+|||+|||||+++..++.. .+..++..|+..... +.+.+.+ ....||+|++|..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l-~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKL-EKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 57889999999999998755432 234667777776533 1121111 1246999999976
Q ss_pred CCCCCCCc--------ccHH---HHHHHHHHHHHHHHhcccCCcEEEEEEcc---CCChHHHHHHHHhc
Q 023158 99 PDVTGLHD--------MDEF---VQSQLILAGLTVVTHVLKEGGKFIAKIFR---GKDTSLLYCQLKLF 153 (286)
Q Consensus 99 p~~tG~~~--------~D~~---~~~~L~~aaL~~a~~vLkpGG~fV~Kif~---g~~~~~l~~~l~~~ 153 (286)
+..+|... .++. ...++....|..+.++|||||.+|..+.. .++...+.+.|+.+
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~ 396 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRH 396 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhC
Confidence 55555421 1111 12356678899999999999999976654 33444555666653
No 31
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.60 E-value=3.1e-07 Score=81.06 Aligned_cols=115 Identities=21% Similarity=0.217 Sum_probs=72.5
Q ss_pred chhHHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHHHHh---------------
Q 023158 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVVIRH--------------- 84 (286)
Q Consensus 21 ~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i~~~--------------- 84 (286)
+..+.+..|+++.......+ ..+|||||||+|.|+..++. .+.+.++..|+... .++...+.
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~-~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~-~~~~~~~~~~~~~~~~~~d~~~~ 92 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFI-PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAG-MLAQAKTKLSENVQFICGDAEKL 92 (240)
T ss_pred HHHHHHHHHHHHhhhhccCC-CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHH-HHHHHHHhcCCCCeEEecchhhC
Confidence 45566777777666554233 47999999999999885543 23445556666533 22122111
Q ss_pred -cCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHH
Q 023158 85 -FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 148 (286)
Q Consensus 85 -l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~ 148 (286)
+..++||+|++....... .| ....+..+.++|+|||.|++..+.......+..
T Consensus 93 ~~~~~~fD~vi~~~~l~~~----~~-------~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~ 146 (240)
T TIGR02072 93 PLEDSSFDLIVSNLALQWC----DD-------LSQALSELARVLKPGGLLAFSTFGPGTLHELRQ 146 (240)
T ss_pred CCCCCceeEEEEhhhhhhc----cC-------HHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHH
Confidence 123568888887643221 11 245788899999999999999887666554443
No 32
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.58 E-value=2.6e-07 Score=79.48 Aligned_cols=111 Identities=25% Similarity=0.214 Sum_probs=66.1
Q ss_pred CCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHHHH-------------------hcCCCCccEEEeCCCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVVIR-------------------HFDGCKADLVVCDGAPD 100 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i~~-------------------~l~~~~~DlVlsDgap~ 100 (286)
++.+|||||||+|-.+..++. .+...++..|+..... +...+ .+..++||+|+|+- |-
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~-~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NP-P~ 108 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL-ELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNP-PF 108 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH-HHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE----S
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH-HHHHHHHHhcCccccccccccccccccccceeEEEEcc-ch
Confidence 677999999999998874432 2333455555554321 11110 12236799999985 32
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhcCCeeEeeC
Q 023158 101 VTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAK 161 (286)
Q Consensus 101 ~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~F~~V~~~K 161 (286)
..|.. ....++...+..+.++|+|||.|++-+-.......+ ++..|..|.+.+
T Consensus 109 ~~~~~-----~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~~~~~~~---l~~~f~~~~~~~ 161 (170)
T PF05175_consen 109 HAGGD-----DGLDLLRDFIEQARRYLKPGGRLFLVINSHLGYERL---LKELFGDVEVVA 161 (170)
T ss_dssp BTTSH-----CHHHHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHH---HHHHHS--EEEE
T ss_pred hcccc-----cchhhHHHHHHHHHHhccCCCEEEEEeecCCChHHH---HHHhcCCEEEEE
Confidence 22221 123456777889999999999998744444455544 667788887753
No 33
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.54 E-value=6.8e-07 Score=82.25 Aligned_cols=94 Identities=21% Similarity=0.292 Sum_probs=63.6
Q ss_pred cCCCCEEEEEcccccccccccCCC--CCcEEEEeeCCChhhHHHHHHh-----------------------cCCCCccEE
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPI--EGVIQVQGDITNARTAEVVIRH-----------------------FDGCKADLV 93 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~--~gv~~i~gDIt~~~~~~~i~~~-----------------------l~~~~~DlV 93 (286)
++++.+|||||||+|.++..++.. +...++..|+...+.. ...++ +..+.||+|
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~-~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V 149 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLA-VAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI 149 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHH-HHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence 467899999999999998866543 2347778888875432 21111 123457777
Q ss_pred EeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChH
Q 023158 94 VCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 144 (286)
Q Consensus 94 lsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~ 144 (286)
++..+ +|.+++ ...++.++.++|||||.|++-.|...+..
T Consensus 150 ~~~~~-----l~~~~d------~~~~l~ei~rvLkpGG~l~i~d~~~~~~~ 189 (261)
T PLN02233 150 TMGYG-----LRNVVD------RLKAMQEMYRVLKPGSRVSILDFNKSTQP 189 (261)
T ss_pred EEecc-----cccCCC------HHHHHHHHHHHcCcCcEEEEEECCCCCcH
Confidence 66543 333332 25688999999999999999888765543
No 34
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.53 E-value=4.2e-07 Score=84.79 Aligned_cols=107 Identities=19% Similarity=0.121 Sum_probs=75.1
Q ss_pred cCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHh-------------------cCCCCccEEEeCCCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRH-------------------FDGCKADLVVCDGAP 99 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~-------------------l~~~~~DlVlsDgap 99 (286)
..++.+|||+|||+|..+..++......++..|+...... ...+. ...++||+|+++...
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~-~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~ 235 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVE-SARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA 235 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHH-HHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH
Confidence 3578999999999999998766543447788888865321 11110 012468888887521
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhcCCeeEee
Q 023158 100 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFA 160 (286)
Q Consensus 100 ~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~F~~V~~~ 160 (286)
+.+...+..+.++|+|||.|++.-+.......+...++..|.-+.+.
T Consensus 236 --------------~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~f~~~~~~ 282 (288)
T TIGR00406 236 --------------EVIKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQGFTVVEIR 282 (288)
T ss_pred --------------HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHccCceeeEe
Confidence 12345677889999999999998887777888888887777666553
No 35
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.53 E-value=8.6e-07 Score=77.49 Aligned_cols=112 Identities=18% Similarity=0.163 Sum_probs=63.8
Q ss_pred chhHHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCCC-CCcEEEEeeCCChhh--HHHHHHhc------------
Q 023158 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPI-EGVIQVQGDITNART--AEVVIRHF------------ 85 (286)
Q Consensus 21 ~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map~-~gv~~i~gDIt~~~~--~~~i~~~l------------ 85 (286)
+..+..+..+++.... ++.+|||+|||+|.++..++.. ++..++..|+..... +++..+..
T Consensus 26 ~~~~~~~d~i~~~~~~----~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~ 101 (181)
T TIGR00138 26 IWERHILDSLKLLEYL----DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRA 101 (181)
T ss_pred HHHHHHHHHHHHHHhc----CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecch
Confidence 3445555555433332 3789999999999988855422 344556666665321 11111111
Q ss_pred ----CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHh
Q 023158 86 ----DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 152 (286)
Q Consensus 86 ----~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~ 152 (286)
..++||+|+|++ .++ ....+..+.++|+|||.+++-. ......++....++
T Consensus 102 ~~~~~~~~fD~I~s~~------~~~---------~~~~~~~~~~~LkpgG~lvi~~-~~~~~~~~~~~~e~ 156 (181)
T TIGR00138 102 EDFQHEEQFDVITSRA------LAS---------LNVLLELTLNLLKVGGYFLAYK-GKKYLDEIEEAKRK 156 (181)
T ss_pred hhccccCCccEEEehh------hhC---------HHHHHHHHHHhcCCCCEEEEEc-CCCcHHHHHHHHHh
Confidence 124678887764 111 1335566789999999999763 34444555444433
No 36
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.50 E-value=3.1e-07 Score=83.64 Aligned_cols=104 Identities=22% Similarity=0.222 Sum_probs=68.5
Q ss_pred CchhHHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCCC-CCcEEEEeeCCChhhHHHHHH------------hcC
Q 023158 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPI-EGVIQVQGDITNARTAEVVIR------------HFD 86 (286)
Q Consensus 20 g~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map~-~gv~~i~gDIt~~~~~~~i~~------------~l~ 86 (286)
..|.+.++.|++ ... ..++.+|||||||+|.++..++.. ++..++..|+.... ++...+ ...
T Consensus 12 ~~~~~~~~~ll~---~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~-~~~a~~~~~~~~~~d~~~~~~ 86 (255)
T PRK14103 12 DHRGRPFYDLLA---RVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEM-VAAARERGVDARTGDVRDWKP 86 (255)
T ss_pred hHhhCHHHHHHH---hCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHH-HHHHHhcCCcEEEcChhhCCC
Confidence 345566666654 232 357789999999999999876543 56777888887543 222111 112
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 87 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 87 ~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
...||+|+|...... +.. ...++..+.++|||||.|++.+..
T Consensus 87 ~~~fD~v~~~~~l~~-----~~d------~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 87 KPDTDVVVSNAALQW-----VPE------HADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CCCceEEEEehhhhh-----CCC------HHHHHHHHHHhCCCCcEEEEEcCC
Confidence 357888888765322 211 256788889999999999987654
No 37
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.49 E-value=4.8e-07 Score=87.89 Aligned_cols=103 Identities=21% Similarity=0.205 Sum_probs=68.2
Q ss_pred HHHHHHHHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhcC--------------CCCccEE
Q 023158 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHFD--------------GCKADLV 93 (286)
Q Consensus 28 KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l~--------------~~~~DlV 93 (286)
|+..|.++.+ ++++.+|||+|||+|+++..++...|++++..|+.... ++...+... .+.||+|
T Consensus 155 k~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~-l~~A~~~~~~l~v~~~~~D~~~l~~~fD~I 232 (383)
T PRK11705 155 KLDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQ-QKLAQERCAGLPVEIRLQDYRDLNGQFDRI 232 (383)
T ss_pred HHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHH-HHHHHHHhccCeEEEEECchhhcCCCCCEE
Confidence 3444445544 46889999999999999998876568888888998653 322222221 2457777
Q ss_pred EeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCC
Q 023158 94 VCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 141 (286)
Q Consensus 94 lsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~ 141 (286)
+|-+.....|.. -....+..+.++|||||.+++..+...
T Consensus 233 vs~~~~ehvg~~---------~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 233 VSVGMFEHVGPK---------NYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred EEeCchhhCChH---------HHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 765433222211 124567889999999999999876433
No 38
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.46 E-value=1.7e-07 Score=87.20 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=60.7
Q ss_pred HHHHHHHHHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhcC------------------CC
Q 023158 27 FKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHFD------------------GC 88 (286)
Q Consensus 27 ~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l~------------------~~ 88 (286)
-|+..|.++.+ +++|++|||||||.|+++..++.-.|+++....++.. ..+.+.+... ..
T Consensus 49 ~k~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~-Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~ 126 (273)
T PF02353_consen 49 RKLDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEE-QAEYARERIREAGLEDRVEVRLQDYRDLPG 126 (273)
T ss_dssp HHHHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HH-HHHHHHHHHHCSTSSSTEEEEES-GGG---
T ss_pred HHHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHH-HHHHHHHHHHhcCCCCceEEEEeeccccCC
Confidence 45555566665 6899999999999999999877655777766666543 2222221110 13
Q ss_pred CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 89 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 89 ~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
+||.|+|=++..--|..+ ...-+..+.++|+|||.|++..+...+
T Consensus 127 ~fD~IvSi~~~Ehvg~~~---------~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 127 KFDRIVSIEMFEHVGRKN---------YPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp S-SEEEEESEGGGTCGGG---------HHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred CCCEEEEEechhhcChhH---------HHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 567766655432222211 244578889999999999988775543
No 39
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.44 E-value=9e-07 Score=70.28 Aligned_cols=85 Identities=18% Similarity=0.186 Sum_probs=56.4
Q ss_pred cCCCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHHH---HhcC------------------CCCccEEEeC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVVI---RHFD------------------GCKADLVVCD 96 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i~---~~l~------------------~~~~DlVlsD 96 (286)
+.++.+|||+|||+|.++..++. .++..++..|+..... +... +.++ ..++|+|+++
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEAL-RLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG 95 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHH-HHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence 35678999999999999997654 3456778888875432 2211 1111 1346666665
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 97 GAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 97 gap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
+.+ ......+..+.++|+|||.|++-..
T Consensus 96 ~~~--------------~~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 96 GSG--------------GLLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred Ccc--------------hhHHHHHHHHHHHcCCCCEEEEEec
Confidence 422 1124778999999999999998653
No 40
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=98.43 E-value=2e-06 Score=88.40 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=107.8
Q ss_pred chhHHHHHHHHHHHHcCCcCCCCEEEEEccccccccc-----------------cc--------CC--------CCC--c
Q 023158 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ-----------------PM--------AP--------IEG--V 65 (286)
Q Consensus 21 ~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq-----------------~m--------ap--------~~g--v 65 (286)
+-.=|-|||..|...+++-- .-+|-.|=|.||.+. .+ .| +.+ -
T Consensus 304 ~ATGAHYKlRsIL~~~~i~~--~d~l~~GDGSGGita~lLR~~p~sr~iFNSLL~~~~~~l~Gs~P~PPsAi~~~g~~~~ 381 (675)
T PF14314_consen 304 LATGAHYKLRSILKNLNIKY--RDALCGGDGSGGITACLLRMNPTSRGIFNSLLELDGSDLRGSHPSPPSAIMALGNDKS 381 (675)
T ss_pred ccccchhhHHHHHHhcCCCc--ceeEEEecCchHHHHHHHHhCcccceeeeccccccCCCCCCCCCCCcHHHhccCcccc
Confidence 44557799999999998542 345666777888876 00 11 111 1
Q ss_pred EEE--------EeeCCChhhHHH---HHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEE
Q 023158 66 IQV--------QGDITNARTAEV---VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 134 (286)
Q Consensus 66 ~~i--------~gDIt~~~~~~~---i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV 134 (286)
+++ .-|+++++|=+. +.+.. +-.+|||++||.. .|......+-...-..+..+|.++|++|
T Consensus 382 Rcvn~~~~W~~pSDLs~~~TW~YF~~l~~~~-~~~idLiv~DmEV-------~d~~~~~kIe~~l~~~~~~ll~~~gtLI 453 (675)
T PF14314_consen 382 RCVNLDTCWEHPSDLSDPETWKYFVSLKKQH-NLSIDLIVMDMEV-------RDDSIIRKIEDNLRDYVHSLLEEPGTLI 453 (675)
T ss_pred eeecchhhhcCccccCCccHHHHHHHHHhhc-CCcccEEEEecee-------cChHHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 112 468888866443 33333 3579999999963 3444444444445566778999999999
Q ss_pred EEEccCC---ChHHHHHHHHhcCCeeEeeCCCCCCCCchhhhhhhcCCCCCC
Q 023158 135 AKIFRGK---DTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPE 183 (286)
Q Consensus 135 ~Kif~g~---~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~yvVc~gf~~~~ 183 (286)
.|+|... ....+...+..+|+.|..+.+..|=.-|+|.|+||++++...
T Consensus 454 fKTYlt~l~~~~~~il~~lg~~F~~V~l~qT~~SSs~TSEVYlv~~~~~~~~ 505 (675)
T PF14314_consen 454 FKTYLTRLLSPDYNILDLLGRYFKSVELVQTQFSSSFTSEVYLVFQKLKKFP 505 (675)
T ss_pred EehhHhhhhcchhhHHHHHHhhcCceEEEECCCCCCCceEEEEEEecccCCC
Confidence 9999642 333678889999999999999999999999999999998755
No 41
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.43 E-value=3.3e-06 Score=74.43 Aligned_cols=89 Identities=24% Similarity=0.260 Sum_probs=58.8
Q ss_pred CCcCCCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhH--HHHHHh---------------c-CCCCccEEEeCC
Q 023158 37 NIFEGVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTA--EVVIRH---------------F-DGCKADLVVCDG 97 (286)
Q Consensus 37 ~l~~~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~--~~i~~~---------------l-~~~~~DlVlsDg 97 (286)
+.++++.+|||+|||+|..+..++. .++.+++..|+...... ++..+. + ..++||+|+|+.
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~ 120 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRA 120 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEcc
Confidence 3456789999999999998886653 35667777787764321 111110 0 124688888864
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccC
Q 023158 98 APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 140 (286)
Q Consensus 98 ap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g 140 (286)
. .+ ....+..+.++|+|||.|++-.+..
T Consensus 121 ~------~~---------~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 121 V------AS---------LSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred c------cC---------HHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 1 11 2456788899999999999776543
No 42
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.41 E-value=2.3e-06 Score=78.46 Aligned_cols=88 Identities=17% Similarity=0.117 Sum_probs=56.0
Q ss_pred cCCCCEEEEEcccccccccccCCC--CCcEEEEeeCCChhhHHHHHHh--------------------cCCCCccEEEeC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPI--EGVIQVQGDITNARTAEVVIRH--------------------FDGCKADLVVCD 96 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~--~gv~~i~gDIt~~~~~~~i~~~--------------------l~~~~~DlVlsD 96 (286)
++++.+|||+|||+|.++..++.. +...++..|++.... +...+. +.++.||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l-~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEML-AKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHH-HHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence 468899999999999887633222 223566667765422 111110 123578999987
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 97 GAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 97 gap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
...+.. .+ ...++..+.++|||||.|++.-+
T Consensus 154 ~v~~~~----~d-------~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 154 CVINLS----PD-------KERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CcccCC----CC-------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 643221 12 14678899999999999998643
No 43
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.40 E-value=1.8e-06 Score=82.07 Aligned_cols=103 Identities=18% Similarity=0.162 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHH--HHHH----------------hc
Q 023158 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAE--VVIR----------------HF 85 (286)
Q Consensus 24 Rsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~--~i~~----------------~l 85 (286)
|+.+|...+...++.+ .+.+|||+|||+|.++..|+......++..|++.....+ .+.+ .+
T Consensus 106 ~s~~k~~~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l 184 (322)
T PRK15068 106 RSDWKWDRVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL 184 (322)
T ss_pred hHHhHHHHHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC
Confidence 5677776666666655 468999999999999998876433356777876643221 1111 11
Q ss_pred C-CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 86 D-GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 86 ~-~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
. .+.||+|+|-+... |..| ....+..+.++|+|||.||+..+
T Consensus 185 p~~~~FD~V~s~~vl~----H~~d-------p~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 185 PALKAFDTVFSMGVLY----HRRS-------PLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred CCcCCcCEEEECChhh----ccCC-------HHHHHHHHHHhcCCCcEEEEEEE
Confidence 1 35688888866421 2122 24578889999999999998764
No 44
>PLN02244 tocopherol O-methyltransferase
Probab=98.39 E-value=2e-06 Score=82.12 Aligned_cols=99 Identities=19% Similarity=0.128 Sum_probs=62.9
Q ss_pred HHHHHHcCC----cCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhH--HHHHH------------------hc
Q 023158 30 LQIDEEFNI----FEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTA--EVVIR------------------HF 85 (286)
Q Consensus 30 ~eId~~f~l----~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~--~~i~~------------------~l 85 (286)
.++.+...+ .+++.+|||+|||+|.++..++...|..++..|+...... ++..+ .+
T Consensus 103 ~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 182 (340)
T PLN02244 103 EESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF 182 (340)
T ss_pred HHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC
Confidence 344444444 2678899999999999998776544667777777654321 11111 01
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 86 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 86 ~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
..+.||+|+|..+. .|..| ...++..+.++|||||.|++-.+.
T Consensus 183 ~~~~FD~V~s~~~~----~h~~d-------~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 183 EDGQFDLVWSMESG----EHMPD-------KRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CCCCccEEEECCch----hccCC-------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 23467777775432 12222 246788899999999999987653
No 45
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.38 E-value=7.5e-07 Score=86.64 Aligned_cols=123 Identities=25% Similarity=0.375 Sum_probs=80.1
Q ss_pred CCCCEEEEEcccccccccccCCC---CCcEEEEeeCCChhhHHHHH---H--------------------hcCCCCccEE
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPI---EGVIQVQGDITNARTAEVVI---R--------------------HFDGCKADLV 93 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~---~gv~~i~gDIt~~~~~~~i~---~--------------------~l~~~~~DlV 93 (286)
++|.||||+||||||.+..|+.+ .|+ ++.-|.....+. .+. . .+.+ .||-|
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~-I~AnD~n~~r~~-~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGV-IFANDSNENRLK-SLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCce-EEecccchHHHH-HHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 57899999999999999966543 343 334454443221 111 1 1222 79999
Q ss_pred EeCCCCCCCCCCcccH-----------HHHHHHHHHHHHHHHhcccCCcEEE---EEEccCCChHHHHHHHHhcCCeeEe
Q 023158 94 VCDGAPDVTGLHDMDE-----------FVQSQLILAGLTVVTHVLKEGGKFI---AKIFRGKDTSLLYCQLKLFFPVVTF 159 (286)
Q Consensus 94 lsDgap~~tG~~~~D~-----------~~~~~L~~aaL~~a~~vLkpGG~fV---~Kif~g~~~~~l~~~l~~~F~~V~~ 159 (286)
|-|+.+..||+-..|. ..-..|++..|..|...+++||.+| |.|.-.++...+-+.|++ |..|++
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K-~p~~kL 395 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKK-RPEVKL 395 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHh-CCceEe
Confidence 9999877777644332 1235677778888899999999999 555556666677788877 444444
Q ss_pred eCCCCCCC
Q 023158 160 AKPKSSRN 167 (286)
Q Consensus 160 ~KP~sSR~ 167 (286)
. |..++.
T Consensus 396 ~-p~~~~i 402 (460)
T KOG1122|consen 396 V-PTGLDI 402 (460)
T ss_pred c-cccccC
Confidence 2 444433
No 46
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.38 E-value=5e-06 Score=71.68 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=72.1
Q ss_pred CCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhc-----------------CCCCccEEEeCCCCC-CC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHF-----------------DGCKADLVVCDGAPD-VT 102 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l-----------------~~~~~DlVlsDgap~-~t 102 (286)
++.+|||||||+|.++..++.. +.+++..|+.... ++...+.+ ..++||+|+++..-. ..
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~-~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFA-VKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHH-HHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 4578999999999999977654 3366677776543 21111110 124799999986321 11
Q ss_pred CCCcccHH---------HHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhc-CCeeEe
Q 023158 103 GLHDMDEF---------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVTF 159 (286)
Q Consensus 103 G~~~~D~~---------~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~-F~~V~~ 159 (286)
+....++. ....+....+..+.++|+|||.|++-.........+...|+.. |+...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEE
Confidence 10000111 1123467788999999999999998776665566777777553 544443
No 47
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.2e-06 Score=84.06 Aligned_cols=118 Identities=20% Similarity=0.207 Sum_probs=66.7
Q ss_pred CCCCEEEEEccccccccccc--------------------------------CCCCCcEEEEeeCCChhhHHHHHH--hc
Q 023158 40 EGVKRVVDLCAAPGSWSQPM--------------------------------APIEGVIQVQGDITNARTAEVVIR--HF 85 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~m--------------------------------ap~~gv~~i~gDIt~~~~~~~i~~--~l 85 (286)
+++.+|||+||||||.|..+ .|.+...+...|++...... +.+ ..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~-~~~~~~~ 232 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIY-LKDGNDK 232 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccc-cccCchh
Confidence 78999999999999999411 11123334444444432210 000 01
Q ss_pred CCCCccEEEeCCCCCCCCCCc--cc---H-------HHHHHHHHHHHHHHHhcccCCcEEEEEEccCC---ChHHHHHHH
Q 023158 86 DGCKADLVVCDGAPDVTGLHD--MD---E-------FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK---DTSLLYCQL 150 (286)
Q Consensus 86 ~~~~~DlVlsDgap~~tG~~~--~D---~-------~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~---~~~~l~~~l 150 (286)
....||-|+||..+..-|... .+ + ...-.|+...|..++++||+||++|-.+-... +..-+...|
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L 312 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEAL 312 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHH
Confidence 124699999998653323211 11 1 11223556677888999999999997665543 333344556
Q ss_pred HhcCCeeE
Q 023158 151 KLFFPVVT 158 (286)
Q Consensus 151 ~~~F~~V~ 158 (286)
+.....+.
T Consensus 313 ~~~~~~~~ 320 (375)
T KOG2198|consen 313 QKVGGAVE 320 (375)
T ss_pred HHhcCccc
Confidence 55554443
No 48
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.37 E-value=5.2e-06 Score=75.76 Aligned_cols=126 Identities=21% Similarity=0.158 Sum_probs=76.5
Q ss_pred CCCCEEEEEcccccccccccCCC-CCcEEEEeeCCChhhHHHHHHh-------------------cCCCCccEEEeCCCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPI-EGVIQVQGDITNARTAEVVIRH-------------------FDGCKADLVVCDGAP 99 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~-~gv~~i~gDIt~~~~~~~i~~~-------------------l~~~~~DlVlsDgap 99 (286)
.++.+|||+|||+|.++..++.. +...++..|+..... +...+. +..++||+|+|+..-
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l-~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEAL-AVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 45679999999999998865532 356677777765422 111111 112479999998531
Q ss_pred CCCCC-Cccc-H-------------HHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHh-cCCeeEeeCCC
Q 023158 100 DVTGL-HDMD-E-------------FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL-FFPVVTFAKPK 163 (286)
Q Consensus 100 ~~tG~-~~~D-~-------------~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~-~F~~V~~~KP~ 163 (286)
...+. +..+ + ..........+..+.++|+|||.+++.+- ......+...++. .|..|.+.|..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g-~~~~~~~~~~l~~~gf~~v~~~~d~ 264 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG-YDQGEAVRALLAAAGFADVETRKDL 264 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC-chHHHHHHHHHHhCCCceeEEecCC
Confidence 11110 0000 0 01345567788889999999999998652 2223445555544 58889888876
Q ss_pred CCCC
Q 023158 164 SSRN 167 (286)
Q Consensus 164 sSR~ 167 (286)
+.+.
T Consensus 265 ~~~~ 268 (275)
T PRK09328 265 AGRD 268 (275)
T ss_pred CCCc
Confidence 6543
No 49
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.35 E-value=4.5e-07 Score=75.15 Aligned_cols=92 Identities=22% Similarity=0.291 Sum_probs=66.8
Q ss_pred cCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHH---------HHHhcCCCCccEEEeCCCCCCCCCCcccH
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEV---------VIRHFDGCKADLVVCDGAPDVTGLHDMDE 109 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~---------i~~~l~~~~~DlVlsDgap~~tG~~~~D~ 109 (286)
..++.+|||+|||.|.|+..|++. |..+...|+........ .......++||+|+|-... +.+..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l-----~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEKRNVVFDNFDAQDPPFPDGSFDLIICNDVL-----EHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHHTTSEEEEEECHTHHCHSSSEEEEEEESSG-----GGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhhhhhhhhhhhhhhhhccccchhhHhhHHHH-----hhccc
Confidence 578899999999999999988653 67888889876432110 0011234689999998653 22322
Q ss_pred HHHHHHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 110 FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 110 ~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
...+|..+.++|||||.+++.+.....
T Consensus 94 ------~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 94 ------PEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp ------HHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred ------HHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 367889999999999999999887643
No 50
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.35 E-value=4.3e-07 Score=68.36 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=52.4
Q ss_pred EEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhc-----------------CCCCccEEEeCCCCCCCCCCccc
Q 023158 46 VDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHF-----------------DGCKADLVVCDGAPDVTGLHDMD 108 (286)
Q Consensus 46 LDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l-----------------~~~~~DlVlsDgap~~tG~~~~D 108 (286)
||+|||+|..+..++..++..++..|+... .++...+.. ..+.||+|++-.+... +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~-~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-----~- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEE-MLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHH-----L- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HH-HHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGG-----S-
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHH-HHHHHHhcccccCchheeehHHhCccccccccccccccceee-----c-
Confidence 899999999998777666778888888765 333333333 2356777776654321 1
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcEEEE
Q 023158 109 EFVQSQLILAGLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 109 ~~~~~~L~~aaL~~a~~vLkpGG~fV~ 135 (286)
.-...++..+.++|||||.+++
T Consensus 74 -----~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 -----EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp -----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred -----cCHHHHHHHHHHHcCcCeEEeC
Confidence 2247789999999999999985
No 51
>PRK14967 putative methyltransferase; Provisional
Probab=98.34 E-value=4.1e-06 Score=74.92 Aligned_cols=126 Identities=14% Similarity=0.057 Sum_probs=73.6
Q ss_pred HHHHHHHHHHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhH--H-HHH--------------HhcCCC
Q 023158 26 AFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTA--E-VVI--------------RHFDGC 88 (286)
Q Consensus 26 a~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~--~-~i~--------------~~l~~~ 88 (286)
...|.++..+.+ ++++.+|||+|||+|.++..++......++..|+...... + .+. +.+...
T Consensus 22 s~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~ 100 (223)
T PRK14967 22 TQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFR 100 (223)
T ss_pred HHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCC
Confidence 345556555554 4677899999999999998666542225666777654221 0 110 112345
Q ss_pred CccEEEeCCCCCCC-CC--CcccH-------HHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHh
Q 023158 89 KADLVVCDGAPDVT-GL--HDMDE-------FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 152 (286)
Q Consensus 89 ~~DlVlsDgap~~t-G~--~~~D~-------~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~ 152 (286)
+||+|+++..-..+ .. ..... .....++...+..+.++|||||.|++-.-.-.+...+...++.
T Consensus 101 ~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~ 174 (223)
T PRK14967 101 PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSE 174 (223)
T ss_pred CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHH
Confidence 79999999631111 10 00000 0122345677888999999999998643333345556666654
No 52
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.34 E-value=2.2e-06 Score=77.87 Aligned_cols=88 Identities=18% Similarity=0.185 Sum_probs=59.8
Q ss_pred cCCCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHHHHhc--------------CCCCccEEEeCCCCCCCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVVIRHF--------------DGCKADLVVCDGAPDVTG 103 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i~~~l--------------~~~~~DlVlsDgap~~tG 103 (286)
+.++.+|||||||+|.++..++. .++..++..|+.... ++...+.+ ...++|+|+|..+....
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~-i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~- 106 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAM-LAEARSRLPDCQFVEADIASWQPPQALDLIFANASLQWL- 106 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHH-HHHHHHhCCCCeEEECchhccCCCCCccEEEEccChhhC-
Confidence 35788999999999999986653 345677777877542 22222211 22478888887654321
Q ss_pred CCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 104 ~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
.| ...++..+.++|||||.|++.+.
T Consensus 107 ---~d-------~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 107 ---PD-------HLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred ---CC-------HHHHHHHHHHhcCCCcEEEEECC
Confidence 12 24678888999999999998754
No 53
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.32 E-value=4.5e-06 Score=72.46 Aligned_cols=105 Identities=16% Similarity=0.164 Sum_probs=68.0
Q ss_pred CCCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHHHH---hcC---------------CCCccEEEeCCCCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVVIR---HFD---------------GCKADLVVCDGAPD 100 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i~~---~l~---------------~~~~DlVlsDgap~ 100 (286)
.++.+|||+|||+|.++..++. .++..++..|+..... +.+.+ .+. ..++|+|++++..
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~-~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~- 107 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDAL-RLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSG- 107 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCc-
Confidence 4778999999999999986543 3456777778876432 11111 110 1357888876531
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHh-cCCeeEe
Q 023158 101 VTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL-FFPVVTF 159 (286)
Q Consensus 101 ~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~-~F~~V~~ 159 (286)
.. +...+..+.++|+|||.|++-.....+..++...++. .|+.+.+
T Consensus 108 ----~~---------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 108 ----GN---------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred ----cC---------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence 11 1345677889999999999876666666666666654 4655544
No 54
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.32 E-value=3.8e-06 Score=75.27 Aligned_cols=126 Identities=20% Similarity=0.161 Sum_probs=74.7
Q ss_pred CCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhH--HH-HH---------------HhcCCCCccEEEeCCCCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTA--EV-VI---------------RHFDGCKADLVVCDGAPDV 101 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~--~~-i~---------------~~l~~~~~DlVlsDgap~~ 101 (286)
.+.+|||+|||+|.++..++. .++..++..|+...... +. +. +.+..++||+|+|+.....
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 456999999999999885543 24556666666543221 00 00 1122457999999864322
Q ss_pred CCC-CcccHH--------------HHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHh-cCCeeEeeCCCCC
Q 023158 102 TGL-HDMDEF--------------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL-FFPVVTFAKPKSS 165 (286)
Q Consensus 102 tG~-~~~D~~--------------~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~-~F~~V~~~KP~sS 165 (286)
++. +..... .........+..+.++|+|||.+++.+- -.....+...++. -|+.|.+.+...+
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-~~~~~~~~~~l~~~gf~~v~~~~d~~~ 245 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-YDQGEAVRALFEAAGFADVETRKDLAG 245 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC-ccHHHHHHHHHHhCCCCceEEEeCCCC
Confidence 111 101000 1123345677889999999999998642 1234455555554 5999998887665
Q ss_pred CC
Q 023158 166 RN 167 (286)
Q Consensus 166 R~ 167 (286)
|.
T Consensus 246 ~~ 247 (251)
T TIGR03534 246 KD 247 (251)
T ss_pred Cc
Confidence 43
No 55
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.32 E-value=2.4e-06 Score=81.09 Aligned_cols=105 Identities=18% Similarity=0.080 Sum_probs=64.7
Q ss_pred cCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhH---HHHHH----------------hcCCCCccEEEeCCCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTA---EVVIR----------------HFDGCKADLVVCDGAP 99 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~---~~i~~----------------~l~~~~~DlVlsDgap 99 (286)
++++.+|||+|||+|+++..++. .|..++..|+...... ..+.. .+..+.+|+|++|.+.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~-~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPPy 258 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGL-MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPPY 258 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHH-hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCCC
Confidence 47899999999999999874432 2444555555443211 01100 0113579999999542
Q ss_pred CC-CCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHH
Q 023158 100 DV-TGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLY 147 (286)
Q Consensus 100 ~~-tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~ 147 (286)
.. ++... .....+....+..+.++|+|||.+++-+-...+...+.
T Consensus 259 g~~~~~~~---~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~~~~~ 304 (329)
T TIGR01177 259 GRSTTAAG---DGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDLESLA 304 (329)
T ss_pred cCcccccC---CchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCHHHHH
Confidence 11 11111 11235567889999999999999998776665655443
No 56
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.30 E-value=9.3e-06 Score=74.10 Aligned_cols=106 Identities=18% Similarity=0.160 Sum_probs=72.1
Q ss_pred cCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhc-----------CCC--CccEEEeCCCCCCCCCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHF-----------DGC--KADLVVCDGAPDVTGLH 105 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l-----------~~~--~~DlVlsDgap~~tG~~ 105 (286)
..++.+|||+|||+|..+..++......++..|+..... +...+.+ ..+ +||+|+++...
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l-~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~------ 189 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAV-EAARENAELNGVELNVYLPQGDLKADVIVANILA------ 189 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHH-HHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcH------
Confidence 468899999999999888766554223478889976532 2222111 111 58999887421
Q ss_pred cccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhc-CCeeEe
Q 023158 106 DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVTF 159 (286)
Q Consensus 106 ~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~-F~~V~~ 159 (286)
..+...+..+.++|||||.||+.-+.......+...++.. |+-+..
T Consensus 190 --------~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 190 --------NPLLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred --------HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCCCEEEEE
Confidence 1234567788999999999999877777777777777665 655543
No 57
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.28 E-value=7.1e-07 Score=83.35 Aligned_cols=118 Identities=24% Similarity=0.255 Sum_probs=76.5
Q ss_pred CCCCEEEEEcccccccccccCCCC--CcEEEEeeCCChhhHHHHHH---h-------------------cCCCCccEEEe
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIE--GVIQVQGDITNARTAEVVIR---H-------------------FDGCKADLVVC 95 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~--gv~~i~gDIt~~~~~~~i~~---~-------------------l~~~~~DlVls 95 (286)
.++.+|||+||||||.+..++.+- ...++..|+...... .+.+ + .....||.|+.
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~-~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLK-RLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHH-HHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHH-HHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 678999999999999997443321 235566676654321 2211 1 11346999999
Q ss_pred CCCCCCCCCCcc-----------cHHHHHHHHHHHHHHHHhcc----cCCcEEEE---EEccCCChHHHHHHHHhcCCee
Q 023158 96 DGAPDVTGLHDM-----------DEFVQSQLILAGLTVVTHVL----KEGGKFIA---KIFRGKDTSLLYCQLKLFFPVV 157 (286)
Q Consensus 96 Dgap~~tG~~~~-----------D~~~~~~L~~aaL~~a~~vL----kpGG~fV~---Kif~g~~~~~l~~~l~~~F~~V 157 (286)
|..+..+|.... +......++...|..+.+.| ||||.+|- .++..++...+...|+.+ ..+
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~-~~~ 241 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH-PDF 241 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS-TSE
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC-CCc
Confidence 997665554221 22235667788899999999 99999994 445566666666777764 334
Q ss_pred Ee
Q 023158 158 TF 159 (286)
Q Consensus 158 ~~ 159 (286)
.+
T Consensus 242 ~l 243 (283)
T PF01189_consen 242 EL 243 (283)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 58
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.28 E-value=5.3e-06 Score=78.75 Aligned_cols=103 Identities=18% Similarity=0.127 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHH--HHHHh----------------c
Q 023158 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAE--VVIRH----------------F 85 (286)
Q Consensus 24 Rsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~--~i~~~----------------l 85 (286)
||-.|...+..+...+ ++.+|||+|||+|..+..|+......++..|.+.....+ .+.+. +
T Consensus 105 ~s~~~~~~~l~~l~~~-~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l 183 (314)
T TIGR00452 105 RSDIKWDRVLPHLSPL-KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL 183 (314)
T ss_pred HHHHHHHHHHHhcCCC-CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC
Confidence 5666666666665544 468999999999999887765422357788887754321 11111 1
Q ss_pred -CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 86 -DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 86 -~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
....||+|+|-+... |..+ ...+|..+.++|||||.||+.++
T Consensus 184 p~~~~FD~V~s~gvL~----H~~d-------p~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 184 HELYAFDTVFSMGVLY----HRKS-------PLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CCCCCcCEEEEcchhh----ccCC-------HHHHHHHHHHhcCCCCEEEEEEE
Confidence 124689999877531 1112 24578899999999999998765
No 59
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.26 E-value=1.7e-06 Score=72.46 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=57.1
Q ss_pred CCCCEEEEEcccccccccccCC--CCCcEEEEeeCCChhhHHHHHH---h---------------cC---CCCccEEEeC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAP--IEGVIQVQGDITNARTAEVVIR---H---------------FD---GCKADLVVCD 96 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map--~~gv~~i~gDIt~~~~~~~i~~---~---------------l~---~~~~DlVlsD 96 (286)
+.+.+|||||||+|.++..+++ .++.+++..|+..... +.... . +. .+.||+|++.
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i-~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMI-EYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISN 80 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHH-HHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHH-HHhhcccccccccccceEEeehhccccccCCCeeEEEEc
Confidence 4678999999999999986652 2345555556655322 11111 0 01 0579999998
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 97 GAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 97 gap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
++. +.... ...++..+.++|++||.+++-.+.
T Consensus 81 ~~l-----~~~~~------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVL-----HHFPD------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STG-----GGTSH------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Cch-----hhccC------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 754 22221 246778899999999999988877
No 60
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.25 E-value=3.3e-06 Score=76.07 Aligned_cols=95 Identities=16% Similarity=0.070 Sum_probs=57.8
Q ss_pred cCCCCEEEEEcccccccccccCC---CCCcEEEEeeCCChhhHHHHHHhcC----CCCccEEEeCCCCCCC---------
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAP---IEGVIQVQGDITNARTAEVVIRHFD----GCKADLVVCDGAPDVT--------- 102 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map---~~gv~~i~gDIt~~~~~~~i~~~l~----~~~~DlVlsDgap~~t--------- 102 (286)
+.++.+|||||||+|.++..++. .++..++..|+... +++...+++. ...+.++..|..-...
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~-ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~ 129 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQP-MVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN 129 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHH-HHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeee
Confidence 46788999999999999986543 36788999999764 3333322221 1123444444320000
Q ss_pred -CCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 103 -GLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 103 -G~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
-+|.+. ..-...++..+.++|+|||.|++.-.
T Consensus 130 ~~l~~~~----~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 130 FTLQFLP----PEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred cchhhCC----HHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 011111 11135678899999999999998743
No 61
>PRK14968 putative methyltransferase; Provisional
Probab=98.24 E-value=8.7e-06 Score=69.59 Aligned_cols=117 Identities=21% Similarity=0.164 Sum_probs=71.5
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHh---------------------cCCCCccEEEeCCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRH---------------------FDGCKADLVVCDGA 98 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~---------------------l~~~~~DlVlsDga 98 (286)
.++.+|||+|||.|.++..++.. +..++..|+.... .+...+. +....+|+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~-~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYA-VECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHH-HHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 57789999999999999977765 6677777876532 2211111 11236888888753
Q ss_pred CCCCCC-Cccc---HH------HHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhc-CCeeE
Q 023158 99 PDVTGL-HDMD---EF------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVT 158 (286)
Q Consensus 99 p~~tG~-~~~D---~~------~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~-F~~V~ 158 (286)
-...+. .... .+ .....+...+..+.++|+|||.+++-+........+...+... |+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 170 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLGFEAEV 170 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCCCeeee
Confidence 211110 0000 00 0123456678889999999999988776555566677666553 54433
No 62
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.24 E-value=4.5e-06 Score=73.40 Aligned_cols=92 Identities=13% Similarity=0.042 Sum_probs=58.4
Q ss_pred HHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhcC------------------CCCccEEEe
Q 023158 34 EEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHFD------------------GCKADLVVC 95 (286)
Q Consensus 34 ~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l~------------------~~~~DlVls 95 (286)
+..+++. +.+|||+|||+|.++..++.. |..++..|+... .++.+.+... ..++|+|+|
T Consensus 24 ~~~~~~~-~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~-~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~ 100 (195)
T TIGR00477 24 EAVKTVA-PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPA-SIASVLDMKARENLPLRTDAYDINAAALNEDYDFIFS 100 (195)
T ss_pred HHhccCC-CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHH-HHHHHHHHHHHhCCCceeEeccchhccccCCCCEEEE
Confidence 3444444 469999999999999988763 678888899754 3322211110 135777776
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEE
Q 023158 96 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 96 Dgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 137 (286)
.+.. +.++ .......+..+.++|+|||.|++-.
T Consensus 101 ~~~~-----~~~~----~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 101 TVVF-----MFLQ----AGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred eccc-----ccCC----HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 5532 1111 1223567888999999999966543
No 63
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.22 E-value=3.6e-06 Score=77.56 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=62.2
Q ss_pred HHHHHHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhc------------------CCCCcc
Q 023158 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHF------------------DGCKAD 91 (286)
Q Consensus 30 ~eId~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l------------------~~~~~D 91 (286)
.++.+..+ ++++.+|||+|||+|.++..++...++.++..|++... ++...+.+ ..+.||
T Consensus 42 ~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~-~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD 119 (263)
T PTZ00098 42 TKILSDIE-LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKM-VNIAKLRNSDKNKIEFEANDILKKDFPENTFD 119 (263)
T ss_pred HHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHH-HHHHHHHcCcCCceEEEECCcccCCCCCCCeE
Confidence 34444443 46788999999999999987765457788888887543 22222222 123455
Q ss_pred EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 92 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 92 lVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
+|++-.+. .|. ..+-...++..+.++|||||.|++..+.
T Consensus 120 ~V~s~~~l----~h~-----~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 120 MIYSRDAI----LHL-----SYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred EEEEhhhH----HhC-----CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 55552211 000 0012356788999999999999987664
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.22 E-value=4.5e-06 Score=73.90 Aligned_cols=108 Identities=13% Similarity=0.080 Sum_probs=61.1
Q ss_pred CCCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhH----------------------HHHHHhcCCCCccEEEeC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTA----------------------EVVIRHFDGCKADLVVCD 96 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~----------------------~~i~~~l~~~~~DlVlsD 96 (286)
+++.+|||||||+|.++..++. .++..++..|+...... +.+...+..+.+|+|++.
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 3678999999999999985543 24445555565543211 001111334567888776
Q ss_pred CCCCCCC-CCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHH
Q 023158 97 GAPDVTG-LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK 151 (286)
Q Consensus 97 gap~~tG-~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~ 151 (286)
....+.. .+... .......+..+.++|+|||.|++.+-.......+...++
T Consensus 119 ~~~p~~~~~~~~~----~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~ 170 (202)
T PRK00121 119 FPDPWPKKRHHKR----RLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLS 170 (202)
T ss_pred CCCCCCCcccccc----ccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 5321100 01111 011255678889999999999987644333444444443
No 65
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.21 E-value=5.1e-06 Score=76.34 Aligned_cols=123 Identities=19% Similarity=0.277 Sum_probs=77.4
Q ss_pred CCCCEEEEEcccccccccccCCC-----------------------------CCcEEEEeeCCChhhHHHHHHhcCCCCc
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPI-----------------------------EGVIQVQGDITNARTAEVVIRHFDGCKA 90 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~-----------------------------~gv~~i~gDIt~~~~~~~i~~~l~~~~~ 90 (286)
....+|||||||.|..+..++.. ..+.++++|+.+.. +.....+|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~------~~~~~~~f 116 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL------KALVFASF 116 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh------hccccccc
Confidence 45789999999999987733221 12445555555432 22233469
Q ss_pred cEEEeCCCCCCCCCC-cccHH------HHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhc-C--CeeEee
Q 023158 91 DLVVCDGAPDVTGLH-DMDEF------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-F--PVVTFA 160 (286)
Q Consensus 91 DlVlsDgap~~tG~~-~~D~~------~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~-F--~~V~~~ 160 (286)
|+|+|+-.-.-.|.. +.++. ...-.+++.++.|.++||+||.|.+ +.+.+...++...|+.+ | .++..+
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~-V~r~erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF-VHRPERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE-EecHHHHHHHHHHHHhcCCCceEEEEe
Confidence 999999754434433 22221 1112246678889999999999876 55666667777777763 4 566666
Q ss_pred CCCCCCCCc
Q 023158 161 KPKSSRNSS 169 (286)
Q Consensus 161 KP~sSR~~S 169 (286)
-|+..++..
T Consensus 196 ~p~~~k~A~ 204 (248)
T COG4123 196 YPKIGKAAN 204 (248)
T ss_pred cCCCCCcce
Confidence 777776643
No 66
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.21 E-value=5.3e-06 Score=73.05 Aligned_cols=85 Identities=15% Similarity=0.060 Sum_probs=55.3
Q ss_pred CCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhc-------------------CCCCccEEEeCCCCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHF-------------------DGCKADLVVCDGAPDV 101 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l-------------------~~~~~DlVlsDgap~~ 101 (286)
++.+|||+|||+|.++..++.. |..++..|+.... ++...+.. -.+.||+|+|-+..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~-i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~-- 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMS-IANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVL-- 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHH-HHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecch--
Confidence 4579999999999999887753 6777888887642 22211100 02357777775532
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 102 TGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 102 tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
+.++ .......+..+.++|+|||.+++-
T Consensus 106 ---~~~~----~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 106 ---MFLE----AKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred ---hhCC----HHHHHHHHHHHHHHcCCCcEEEEE
Confidence 1111 122456788899999999997654
No 67
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.21 E-value=3.7e-06 Score=76.72 Aligned_cols=86 Identities=24% Similarity=0.299 Sum_probs=61.8
Q ss_pred CCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHH-----------------Hhc--CCCCccEEEeCCCCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVI-----------------RHF--DGCKADLVVCDGAPDV 101 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~-----------------~~l--~~~~~DlVlsDgap~~ 101 (286)
+|.+|||+|||=|..|++|+.. |..+...|+.+... +... +.+ .+++||+|+|-=-.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I-~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVl-- 134 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPI-EVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVL-- 134 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHH-HHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHH--
Confidence 7899999999999999999974 78888999988643 1111 111 23699999995210
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 102 TGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 102 tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
.|.-| ....+..+.+++||||.+++.+..
T Consensus 135 --EHv~d-------p~~~~~~c~~lvkP~G~lf~STin 163 (243)
T COG2227 135 --EHVPD-------PESFLRACAKLVKPGGILFLSTIN 163 (243)
T ss_pred --HccCC-------HHHHHHHHHHHcCCCcEEEEeccc
Confidence 11122 245677889999999999887765
No 68
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.20 E-value=5.1e-06 Score=75.70 Aligned_cols=88 Identities=16% Similarity=0.194 Sum_probs=57.8
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHh----------------------cCCCCccEEEeCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRH----------------------FDGCKADLVVCDG 97 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~----------------------l~~~~~DlVlsDg 97 (286)
.++.+|||+|||+|.++..++.. |..++..|+..... +...+. +..+.||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l-~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMI-QRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHH-HHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 45689999999999999977654 66777777775432 111111 1234677777754
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccC
Q 023158 98 APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 140 (286)
Q Consensus 98 ap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g 140 (286)
... .+.. ...++..+.++|||||.+++-.+..
T Consensus 121 vl~-----~~~~------~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 121 VLE-----WVAD------PKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred HHH-----hhCC------HHHHHHHHHHHcCCCeEEEEEEECc
Confidence 321 1111 1467888999999999998766654
No 69
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.20 E-value=2.6e-06 Score=74.92 Aligned_cols=107 Identities=14% Similarity=0.169 Sum_probs=66.5
Q ss_pred cCCCCEEEEEcccccccccccCCC--CCcEEEEeeCCChhhHHHHH---HhcC-C------------------CCccEEE
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPI--EGVIQVQGDITNARTAEVVI---RHFD-G------------------CKADLVV 94 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~--~gv~~i~gDIt~~~~~~~i~---~~l~-~------------------~~~DlVl 94 (286)
+.++.+|||+|||+|.++..++.. ++.+++..|+..... +.+. +.++ . ..+|+|+
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~-~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAI-NLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 457889999999999999865432 345677777765432 1111 1121 1 2355555
Q ss_pred eCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhc-CCeeEeeC
Q 023158 95 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVTFAK 161 (286)
Q Consensus 95 sDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~-F~~V~~~K 161 (286)
+.+. ..-+...+..+.++|+|||.+|+-...-+....+...|+.. | .+.+..
T Consensus 117 ~~~~--------------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~-~~~~~~ 169 (198)
T PRK00377 117 IGGG--------------SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF-NLEITE 169 (198)
T ss_pred ECCC--------------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC-CeEEEE
Confidence 4331 01135678888999999999997655555666777777543 5 455543
No 70
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.18 E-value=2.2e-05 Score=72.41 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=57.7
Q ss_pred CCCCEEEEEcccccccccccCCC----CCcEEEEeeCCChhhHHHHHHhc---------------CCCCccEEEeCCCCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPI----EGVIQVQGDITNARTAEVVIRHF---------------DGCKADLVVCDGAPD 100 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~----~gv~~i~gDIt~~~~~~~i~~~l---------------~~~~~DlVlsDgap~ 100 (286)
....+|||+|||+|.++..++.. .+..++..|+.... ++...+.. ..+.||+|++-.+|.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~-l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~~ 162 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVA-IKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAPC 162 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHH-HHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCCC
Confidence 45678999999999998855321 13466777887643 32222221 234577777644321
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHH
Q 023158 101 VTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQ 149 (286)
Q Consensus 101 ~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~ 149 (286)
.+....++|||||.|++-+....+..++...
T Consensus 163 ------------------~~~e~~rvLkpgG~li~~~p~~~~l~el~~~ 193 (272)
T PRK11088 163 ------------------KAEELARVVKPGGIVITVTPGPRHLFELKGL 193 (272)
T ss_pred ------------------CHHHHHhhccCCCEEEEEeCCCcchHHHHHH
Confidence 2356789999999999877666555555443
No 71
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.16 E-value=7.4e-06 Score=81.03 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=63.1
Q ss_pred HHHHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHh-------------------cCCCCccE
Q 023158 32 IDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRH-------------------FDGCKADL 92 (286)
Q Consensus 32 Id~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~-------------------l~~~~~Dl 92 (286)
+.+... ++++.+|||+|||+|.++..++...|..++..|+..... +...+. +..++||+
T Consensus 258 l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l-~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 335 (475)
T PLN02336 258 FVDKLD-LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMI-SFALERAIGRKCSVEFEVADCTKKTYPDNSFDV 335 (475)
T ss_pred HHHhcC-CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHH-HHHHHHhhcCCCceEEEEcCcccCCCCCCCEEE
Confidence 333443 467889999999999988866654477788888875432 211111 12346888
Q ss_pred EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 93 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 93 VlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
|+|.++.. |..| ...++..+.++|||||.|++..+.
T Consensus 336 I~s~~~l~----h~~d-------~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 336 IYSRDTIL----HIQD-------KPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred EEECCccc----ccCC-------HHHHHHHHHHHcCCCeEEEEEEec
Confidence 88865431 1122 246788999999999999988663
No 72
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.14 E-value=1.4e-05 Score=76.61 Aligned_cols=109 Identities=15% Similarity=0.101 Sum_probs=69.3
Q ss_pred CCEEEEEcccccccccccCCC-CCcEEEEeeCCChhhHHHHHHh-----c------------CCCCccEEEeCCCCCCCC
Q 023158 42 VKRVVDLCAAPGSWSQPMAPI-EGVIQVQGDITNARTAEVVIRH-----F------------DGCKADLVVCDGAPDVTG 103 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map~-~gv~~i~gDIt~~~~~~~i~~~-----l------------~~~~~DlVlsDgap~~tG 103 (286)
..+|||||||+|.++..++.. ++..++..|+..... +..... + ..++||+|+|+.... .|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al-~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH-~g 274 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL-ESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFH-DG 274 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCcc-CC
Confidence 348999999999999866543 556777778865322 111110 0 135799999986432 22
Q ss_pred CCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhcCCeeEee
Q 023158 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFA 160 (286)
Q Consensus 104 ~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~F~~V~~~ 160 (286)
... ........+..+.++|+|||.|++-..+.-....+ +...|..+.+.
T Consensus 275 ~~~-----~~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~---l~~~Fg~~~~l 323 (342)
T PRK09489 275 IQT-----SLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDL---LDETFGSHEVL 323 (342)
T ss_pred ccc-----cHHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHH---HHHHcCCeEEE
Confidence 211 12345677889999999999998766554444443 34468777664
No 73
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.12 E-value=2.3e-06 Score=81.01 Aligned_cols=134 Identities=22% Similarity=0.274 Sum_probs=86.0
Q ss_pred CCCchHHHHHHHhCchhHHHHHHHHHHHHcCCc---------CCCCEEEEEcccccccccccC--CC-------------
Q 023158 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF---------EGVKRVVDLCAAPGSWSQPMA--PI------------- 62 (286)
Q Consensus 7 ~~rD~y~r~Ak~~g~raRsa~KL~eId~~f~l~---------~~g~~VLDLgaaPGswSq~ma--p~------------- 62 (286)
-.+++| ..-.+.|+-.|...+++.|-.-.|++ +++..|+|||||-||=..... .+
T Consensus 75 ~Va~HY-N~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI 153 (389)
T KOG1975|consen 75 EVAEHY-NERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSI 153 (389)
T ss_pred HHHHHH-HHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccH
Confidence 345665 66677788888887777766655554 578999999999999665211 11
Q ss_pred ------------------CCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHH
Q 023158 63 ------------------EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVT 124 (286)
Q Consensus 63 ------------------~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~ 124 (286)
--+.++.||-+.....+.+ + +...+||+|-|--+.+.+ +.+.+-++.+|..+.
T Consensus 154 ~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~-e-~~dp~fDivScQF~~HYa-------Fetee~ar~~l~Nva 224 (389)
T KOG1975|consen 154 NQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLL-E-FKDPRFDIVSCQFAFHYA-------FETEESARIALRNVA 224 (389)
T ss_pred HHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhc-c-CCCCCcceeeeeeeEeee-------eccHHHHHHHHHHHH
Confidence 1234555555554322111 1 123348888887654321 122344577889999
Q ss_pred hcccCCcEEEEEEccCCChHHHHHHHHhc
Q 023158 125 HVLKEGGKFIAKIFRGKDTSLLYCQLKLF 153 (286)
Q Consensus 125 ~vLkpGG~fV~Kif~g~~~~~l~~~l~~~ 153 (286)
+.|+|||.||..+ ++...+++.|+..
T Consensus 225 ~~LkpGG~FIgTi---Pdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 225 KCLKPGGVFIGTI---PDSDVIIKRLRAG 250 (389)
T ss_pred hhcCCCcEEEEec---CcHHHHHHHHHhc
Confidence 9999999999865 5667778877764
No 74
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=2.5e-05 Score=73.65 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=75.4
Q ss_pred cCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhH---HHHHH----------------hcCCCCccEEEeCCCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTA---EVVIR----------------HFDGCKADLVVCDGAP 99 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~---~~i~~----------------~l~~~~~DlVlsDgap 99 (286)
.++|++|||+|||+|-.+..++.+....++..||-..... +.+.. ...+++||+|+|+-
T Consensus 160 ~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-- 237 (300)
T COG2264 160 LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-- 237 (300)
T ss_pred hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh--
Confidence 4699999999999999999887664455777888765432 11110 01235899999873
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHH-HhcCCeeEeeC
Q 023158 100 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL-KLFFPVVTFAK 161 (286)
Q Consensus 100 ~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l-~~~F~~V~~~K 161 (286)
.++.+......+.++|||||.+++.=.-......+.+.+ +.-|.-+.+..
T Consensus 238 ------------LA~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 238 ------------LAEVLVELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred ------------hHHHHHHHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEe
Confidence 234455667788999999999998855555566677666 44677776654
No 75
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.11 E-value=1.5e-05 Score=75.99 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=59.9
Q ss_pred CCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHh---------------------cCCCCccEEEeCCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRH---------------------FDGCKADLVVCDGAP 99 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~---------------------l~~~~~DlVlsDgap 99 (286)
++.+|||+|||+|.++..++. .|..++..|+..... +....+ +..++||+|+|-...
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~-~g~~V~GID~s~~~i-~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR-MGATVTGVDAVDKNV-KIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH-cCCEEEEEeCCHHHH-HHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 577999999999999998875 477788888886532 221111 123468888875421
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccC
Q 023158 100 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 140 (286)
Q Consensus 100 ~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g 140 (286)
. |..| ....+..+.++|||||.|++.++..
T Consensus 209 e----Hv~d-------~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 209 E----HVAN-------PAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred H----hcCC-------HHHHHHHHHHHcCCCcEEEEEECCc
Confidence 1 1112 2467788889999999999988754
No 76
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.10 E-value=9.6e-06 Score=70.94 Aligned_cols=91 Identities=21% Similarity=0.260 Sum_probs=57.8
Q ss_pred CCCCEEEEEcccccccccccCCCCC--cEEEEeeCCChhhHHHHHHh------------------cCCCCccEEEeCCCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEG--VIQVQGDITNARTAEVVIRH------------------FDGCKADLVVCDGAP 99 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~g--v~~i~gDIt~~~~~~~i~~~------------------l~~~~~DlVlsDgap 99 (286)
.++.+|||+|||+|.++..+....+ ..++..|+.... ++...+. +..+++|+|++...
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~-~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~- 115 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEM-LEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFG- 115 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHH-HHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeee-
Confidence 3788999999999999986543222 466677775432 2222111 12246788876542
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 100 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 100 ~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
++.... ...++..+.++|+|||.+++..+....
T Consensus 116 ----~~~~~~------~~~~l~~~~~~L~~gG~l~~~~~~~~~ 148 (223)
T TIGR01934 116 ----LRNVTD------IQKALREMYRVLKPGGRLVILEFSKPA 148 (223)
T ss_pred ----eCCccc------HHHHHHHHHHHcCCCcEEEEEEecCCC
Confidence 222222 246788899999999999987665443
No 77
>PRK05785 hypothetical protein; Provisional
Probab=98.10 E-value=8.5e-06 Score=73.50 Aligned_cols=79 Identities=23% Similarity=0.208 Sum_probs=54.7
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHH------------hcCCCCccEEEeCCCCCCCCCCcc
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIR------------HFDGCKADLVVCDGAPDVTGLHDM 107 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~------------~l~~~~~DlVlsDgap~~tG~~~~ 107 (286)
.++.+|||||||||..+..++...+..++..|++..+.. ...+ .+..+.||+|++-.+ +|++
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~-~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~-----l~~~ 123 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLK-MNLVADDKVVGSFEALPFRDKSFDVVMSSFA-----LHAS 123 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHH-HHHhccceEEechhhCCCCCCCEEEEEecCh-----hhcc
Confidence 357899999999999988776543567888898775432 2111 123467999998653 3443
Q ss_pred cHHHHHHHHHHHHHHHHhcccCC
Q 023158 108 DEFVQSQLILAGLTVVTHVLKEG 130 (286)
Q Consensus 108 D~~~~~~L~~aaL~~a~~vLkpG 130 (286)
+. ...++.++.++|||.
T Consensus 124 ~d------~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 124 DN------IEKVIAEFTRVSRKQ 140 (226)
T ss_pred CC------HHHHHHHHHHHhcCc
Confidence 32 367899999999993
No 78
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.10 E-value=6e-06 Score=79.19 Aligned_cols=92 Identities=21% Similarity=0.145 Sum_probs=58.8
Q ss_pred HHHcCCcCCCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHHHHh-----------------cCCCCccEEE
Q 023158 33 DEEFNIFEGVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVVIRH-----------------FDGCKADLVV 94 (286)
Q Consensus 33 d~~f~l~~~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i~~~-----------------l~~~~~DlVl 94 (286)
.+...+-+++.+|||||||+|.++..++. .++..++..|++... ++...+. +..+.||+|+
T Consensus 105 l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~m-L~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVI 183 (340)
T PLN02490 105 LEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ-LAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYV 183 (340)
T ss_pred HhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHH-HHHHHHhhhccCCeEEeccHHhCCCCCCceeEEE
Confidence 34444446788999999999998875543 244566677876542 2222211 1235688888
Q ss_pred eCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 95 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 95 sDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
+..+... ..|. ..++..+.++|+|||.+++-
T Consensus 184 s~~~L~~----~~d~-------~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 184 SAGSIEY----WPDP-------QRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EcChhhh----CCCH-------HHHHHHHHHhcCCCcEEEEE
Confidence 8654321 1121 35789999999999999764
No 79
>PRK08317 hypothetical protein; Provisional
Probab=98.09 E-value=8.7e-06 Score=71.52 Aligned_cols=87 Identities=22% Similarity=0.217 Sum_probs=56.0
Q ss_pred cCCCCEEEEEcccccccccccCCC--CCcEEEEeeCCChhhHHHHHHh-------------------cCCCCccEEEeCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPI--EGVIQVQGDITNARTAEVVIRH-------------------FDGCKADLVVCDG 97 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~--~gv~~i~gDIt~~~~~~~i~~~-------------------l~~~~~DlVlsDg 97 (286)
+.++.+|||+|||+|.|+..++.. ++..++..|+.... ++...+. +..+.||+|++..
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~-~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAM-LALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHH-HHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEec
Confidence 467889999999999999876543 34567777776532 2222111 1124577777654
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEE
Q 023158 98 APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 98 ap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 137 (286)
..... .| ....+..+.++|+|||.+++-.
T Consensus 96 ~~~~~----~~-------~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 96 VLQHL----ED-------PARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred hhhcc----CC-------HHHHHHHHHHHhcCCcEEEEEe
Confidence 32110 11 2456788899999999998754
No 80
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.08 E-value=9.2e-06 Score=71.32 Aligned_cols=110 Identities=14% Similarity=-0.016 Sum_probs=63.9
Q ss_pred CCCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHH---HHH-------------------HhcCCCCccEEEeC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAE---VVI-------------------RHFDGCKADLVVCD 96 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~---~i~-------------------~~l~~~~~DlVlsD 96 (286)
+...+|||||||+|.++..++. .++..++..|+....... .+. ..+..+.+|.|+++
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 3567999999999999985543 244555666665432210 000 11223457777776
Q ss_pred CCCCCCC-CCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhc
Q 023158 97 GAPDVTG-LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 153 (286)
Q Consensus 97 gap~~tG-~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~ 153 (286)
....+.. -|.... -+....+..+.++|||||.|++.+........+...+...
T Consensus 95 ~pdpw~k~~h~~~r----~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~ 148 (194)
T TIGR00091 95 FPDPWPKKRHNKRR----ITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN 148 (194)
T ss_pred CCCcCCCCCccccc----cCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence 5321111 111000 0124567889999999999998876655555566666554
No 81
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.08 E-value=1.8e-05 Score=73.64 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=76.9
Q ss_pred CEEEEEcccccccccccCC-CCCcEEEEeeCCChhhH---HHHH----------------HhcCCCCccEEEeCCCCCCC
Q 023158 43 KRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTA---EVVI----------------RHFDGCKADLVVCDGAPDVT 102 (286)
Q Consensus 43 ~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~---~~i~----------------~~l~~~~~DlVlsDgap~~t 102 (286)
.+|||||||+|.++..++. .++..++..|+...... +.+. +.+.+.+||+|+||-. ...
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPP-yi~ 194 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPP-YID 194 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCC-CCC
Confidence 6999999999999886553 34566677777654321 1111 0112237999999853 221
Q ss_pred CC--------CcccHH-------HHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHH--hcCCeeEeeCCCCC
Q 023158 103 GL--------HDMDEF-------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLK--LFFPVVTFAKPKSS 165 (286)
Q Consensus 103 G~--------~~~D~~-------~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~--~~F~~V~~~KP~sS 165 (286)
.. ...... .........+..+.++|+|||.|++.+-.. ....+...+. ..|..+.+.|..+.
T Consensus 195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~-q~~~~~~~~~~~~~~~~~~~~~D~~g 273 (284)
T TIGR00536 195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW-QQKSLKELLRIKFTWYDVENGRDLNG 273 (284)
T ss_pred cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc-HHHHHHHHHHhcCCCceeEEecCCCC
Confidence 10 000100 123456778889999999999999887532 2233444444 24888888887666
Q ss_pred CCCchhhhhhh
Q 023158 166 RNSSIEAFAVC 176 (286)
Q Consensus 166 R~~S~E~yvVc 176 (286)
+. +++++
T Consensus 274 ~~----R~~~~ 280 (284)
T TIGR00536 274 KE----RVVLG 280 (284)
T ss_pred Cc----eEEEE
Confidence 54 55544
No 82
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.08 E-value=3.1e-06 Score=67.10 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=52.4
Q ss_pred CCEEEEEcccccccccccCC---------------------------C-CCcEEEEeeCCChhhHHHHHHhcCCCCccEE
Q 023158 42 VKRVVDLCAAPGSWSQPMAP---------------------------I-EGVIQVQGDITNARTAEVVIRHFDGCKADLV 93 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map---------------------------~-~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlV 93 (286)
|.+|||+|||.|.++..+.. . ..+.++++|+++.. +.+..+++|+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP------EPLPDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH------HTCTTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch------hhccCceeEEE
Confidence 56999999999998872211 1 23566666664432 23456789999
Q ss_pred EeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEE
Q 023158 94 VCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 94 lsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 137 (286)
++|...... ..+.....++....+..+.++|+|||.+++-+
T Consensus 75 v~npP~~~~---~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 75 VTNPPYGPR---SGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp EE--STTSB---TT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCCccc---cccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 999743211 11111112244567888999999999998743
No 83
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.08 E-value=5.7e-06 Score=72.42 Aligned_cols=113 Identities=14% Similarity=0.085 Sum_probs=65.8
Q ss_pred cCCCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHHHHh---cCCCCccEEEeCCCC---CCCCCCcccHHH
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVVIRH---FDGCKADLVVCDGAP---DVTGLHDMDEFV 111 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i~~~---l~~~~~DlVlsDgap---~~tG~~~~D~~~ 111 (286)
++++.+|||+|||+|.++..++. .++..++..|+... .++.+.+. ++-..+.++..|... ......+.-...
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~-~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~ 116 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEE-VVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIE 116 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEE
Confidence 35788999999999999987653 24567888888754 33333322 222235566555421 111000000000
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHh
Q 023158 112 QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 152 (286)
Q Consensus 112 ~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~ 152 (286)
...-...++..+.++|+|||.|++....-.+...+...++.
T Consensus 117 ~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 157 (196)
T PRK07402 117 GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQ 157 (196)
T ss_pred CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHh
Confidence 00112567888899999999999987765444445555543
No 84
>PRK00811 spermidine synthase; Provisional
Probab=98.07 E-value=2.4e-05 Score=72.94 Aligned_cols=131 Identities=19% Similarity=0.215 Sum_probs=78.4
Q ss_pred CCCCEEEEEcccccccccccCCCCCc-EEEEeeCCChhhHHHHHHhc--------------------------CCCCccE
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGV-IQVQGDITNARTAEVVIRHF--------------------------DGCKADL 92 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv-~~i~gDIt~~~~~~~i~~~l--------------------------~~~~~Dl 92 (286)
....+||+||||.|+.+..+...+++ .+...||... +++...+++ ..+++|+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~-vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDER-VVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHH-HHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 35679999999999998865544332 3444555432 221111111 1357999
Q ss_pred EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEcc----CCChHHHHHHHHhcCCeeEeeCC-CCCCC
Q 023158 93 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR----GKDTSLLYCQLKLFFPVVTFAKP-KSSRN 167 (286)
Q Consensus 93 VlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~----g~~~~~l~~~l~~~F~~V~~~KP-~sSR~ 167 (286)
|++|..... +.. .+. .....+..+.+.|+|||.||+-.-. ......+...|+..|..|..+.- -.+.+
T Consensus 154 Ii~D~~dp~-~~~--~~l----~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~~~~vp~~~ 226 (283)
T PRK00811 154 IIVDSTDPV-GPA--EGL----FTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFPIVRPYQAAIPTYP 226 (283)
T ss_pred EEECCCCCC-Cch--hhh----hHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCCCEEEEEeECCccc
Confidence 999975322 111 010 1245567788999999999975321 22345667788889999988752 23333
Q ss_pred CchhhhhhhcC
Q 023158 168 SSIEAFAVCEN 178 (286)
Q Consensus 168 ~S~E~yvVc~g 178 (286)
+..-.|++|..
T Consensus 227 ~~~w~f~~as~ 237 (283)
T PRK00811 227 SGLWSFTFASK 237 (283)
T ss_pred CchheeEEeec
Confidence 44445677754
No 85
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.04 E-value=1.2e-05 Score=74.70 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=55.9
Q ss_pred CcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhcC------------------CCCccEEEeCCCC
Q 023158 38 IFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHFD------------------GCKADLVVCDGAP 99 (286)
Q Consensus 38 l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l~------------------~~~~DlVlsDgap 99 (286)
+++++ +|||+|||+|.++..++. .|..++..|+.... ++.+.+... .+.||+|++-+..
T Consensus 118 ~~~~~-~vLDlGcG~G~~~~~la~-~g~~V~avD~s~~a-i~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl 194 (287)
T PRK12335 118 TVKPG-KALDLGCGQGRNSLYLAL-LGFDVTAVDINQQS-LENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVL 194 (287)
T ss_pred ccCCC-CEEEeCCCCCHHHHHHHH-CCCEEEEEECCHHH-HHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchh
Confidence 34554 999999999999998775 37788888997643 222211110 2356666665432
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 100 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 100 ~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
+.++ .+.....+..+.++|+|||.+++-
T Consensus 195 -----~~l~----~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 195 -----MFLN----RERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred -----hhCC----HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1111 123456788889999999997653
No 86
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.04 E-value=3.9e-05 Score=67.81 Aligned_cols=91 Identities=21% Similarity=0.212 Sum_probs=56.6
Q ss_pred CCCCEEEEEcccccccccccCCCC--CcEEEEeeCCChhhHHHHHHhc---------------------CCCCccEEEeC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIE--GVIQVQGDITNARTAEVVIRHF---------------------DGCKADLVVCD 96 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~--gv~~i~gDIt~~~~~~~i~~~l---------------------~~~~~DlVlsD 96 (286)
.++.+|||+|||+|.++..++... ...++..|+.... ++...+.+ ..+.+|+|++.
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~-~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~ 128 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGM-LAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEe
Confidence 367899999999999988654432 3566777776532 22222211 12356777664
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 97 GAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 97 gap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
.. ++.... ....+..+.++|+|||.+++..+....
T Consensus 129 ~~-----l~~~~~------~~~~l~~~~~~L~~gG~li~~~~~~~~ 163 (239)
T PRK00216 129 FG-----LRNVPD------IDKALREMYRVLKPGGRLVILEFSKPT 163 (239)
T ss_pred cc-----cccCCC------HHHHHHHHHHhccCCcEEEEEEecCCC
Confidence 32 122221 245678888999999999887665443
No 87
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.03 E-value=2.3e-05 Score=71.36 Aligned_cols=98 Identities=18% Similarity=0.101 Sum_probs=60.2
Q ss_pred cCCCCEEEEEcccccccccccCC---CCCcEEEEeeCCChhhHHHHHHhcC----CCCccEEEeCCCCCCCCCCcccHH-
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAP---IEGVIQVQGDITNARTAEVVIRHFD----GCKADLVVCDGAPDVTGLHDMDEF- 110 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map---~~gv~~i~gDIt~~~~~~~i~~~l~----~~~~DlVlsDgap~~tG~~~~D~~- 110 (286)
+.++.+|||||||+|.++..++. .++.+++..|+...+ ++...+++. ...++++.+|..-...+..+..-.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~m-l~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~ 132 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAM-IERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLN 132 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHH-HHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehh
Confidence 46889999999999999876543 468899999998753 333333321 124666666642100010111000
Q ss_pred HHH-----HHHHHHHHHHHhcccCCcEEEEEE
Q 023158 111 VQS-----QLILAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 111 ~~~-----~L~~aaL~~a~~vLkpGG~fV~Ki 137 (286)
..+ .-...++..+.++|||||.|++-.
T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 001 112567889999999999998753
No 88
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.03 E-value=2.6e-05 Score=72.13 Aligned_cols=84 Identities=23% Similarity=0.311 Sum_probs=58.0
Q ss_pred CCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhc---------------------C--CCCccEEEeCCC
Q 023158 42 VKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHF---------------------D--GCKADLVVCDGA 98 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l---------------------~--~~~~DlVlsDga 98 (286)
|++|||+|||.|=.|++++++ |.++...|+++... +...++. + .++||.|+|-..
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V-~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMV-EVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHH-HHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 489999999999999999985 78888889998543 2222111 0 145888887532
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 99 PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 99 p~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
- .| .......+....++|||||.+++.+.
T Consensus 168 l--------eH---V~dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 168 L--------EH---VKDPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred H--------HH---HhCHHHHHHHHHHHhCCCCceEeeeh
Confidence 1 11 11234567778899999999887665
No 89
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.02 E-value=2e-05 Score=76.60 Aligned_cols=110 Identities=17% Similarity=0.138 Sum_probs=69.4
Q ss_pred CCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhH---HHHH------------------HhcCCCCccEEEeCCCC
Q 023158 42 VKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTA---EVVI------------------RHFDGCKADLVVCDGAP 99 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~---~~i~------------------~~l~~~~~DlVlsDgap 99 (286)
+.+|||||||+|.++..++. .|+..++..|+...... +.+. +.+.+.+||+|+|+-..
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF 308 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence 45999999999999986643 35677888888754321 1110 01123479999998543
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhcCCeeEee
Q 023158 100 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFA 160 (286)
Q Consensus 100 ~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~F~~V~~~ 160 (286)
. .|.. +.. .+....+..+.++|+|||.|.+-..+.-. ....|++.|..+...
T Consensus 309 h-~~~~-~~~----~ia~~l~~~a~~~LkpGG~L~iV~nr~l~---y~~~L~~~fg~~~~v 360 (378)
T PRK15001 309 H-QQHA-LTD----NVAWEMFHHARRCLKINGELYIVANRHLD---YFHKLKKIFGNCTTI 360 (378)
T ss_pred c-cCcc-CCH----HHHHHHHHHHHHhcccCCEEEEEEecCcC---HHHHHHHHcCCceEE
Confidence 2 2221 111 23456778889999999999887654433 234455578777654
No 90
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=97.98 E-value=7e-05 Score=73.71 Aligned_cols=134 Identities=15% Similarity=0.057 Sum_probs=78.9
Q ss_pred cCCCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhH---HHHHH---------------hc-CCCCccEEEeCCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTA---EVVIR---------------HF-DGCKADLVVCDGA 98 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~---~~i~~---------------~l-~~~~~DlVlsDga 98 (286)
+.++.+|||||||+|..+..++. .++..++..|+...... +.+.. .+ ...+||+|+||-.
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCC
Confidence 34567999999999998875432 24455555666543221 11100 00 1246999999963
Q ss_pred CCCCCCCcc-------cHH-------HHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHh-cCCeeEeeCCC
Q 023158 99 PDVTGLHDM-------DEF-------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL-FFPVVTFAKPK 163 (286)
Q Consensus 99 p~~tG~~~~-------D~~-------~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~-~F~~V~~~KP~ 163 (286)
--.++.... +.. ......+..+..+.++|+|||.+++.+-. ..-..+...++. -|..|.+.|..
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~Q~e~V~~ll~~~Gf~~v~v~kDl 407 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-DQGAAVRGVLAENGFSGVETLPDL 407 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-cHHHHHHHHHHHCCCcEEEEEEcC
Confidence 111111110 000 12344567778888999999999876532 234455555544 48889988887
Q ss_pred CCCCCchhhhhhhc
Q 023158 164 SSRNSSIEAFAVCE 177 (286)
Q Consensus 164 sSR~~S~E~yvVc~ 177 (286)
+.+. ++++++
T Consensus 408 ~G~d----R~v~~~ 417 (423)
T PRK14966 408 AGLD----RVTLGK 417 (423)
T ss_pred CCCc----EEEEEE
Confidence 7664 777654
No 91
>PRK06922 hypothetical protein; Provisional
Probab=97.98 E-value=2.1e-05 Score=80.98 Aligned_cols=91 Identities=22% Similarity=0.308 Sum_probs=57.2
Q ss_pred CCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHHHHh---------------------cCCCCccEEEeCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVVIRH---------------------FDGCKADLVVCDGA 98 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i~~~---------------------l~~~~~DlVlsDga 98 (286)
++.+|||+|||+|.++..++. .++..++..|+..... +...+. +..+.||+|++...
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML-e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI-DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH-HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 578999999999999876553 4677888888877532 222111 22345666665432
Q ss_pred CCCCCCCcccHH-------HHHHHHHHHHHHHHhcccCCcEEEEEE
Q 023158 99 PDVTGLHDMDEF-------VQSQLILAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 99 p~~tG~~~~D~~-------~~~~L~~aaL~~a~~vLkpGG~fV~Ki 137 (286)
. |++-.+ ....-...++..+.++|||||.|++-.
T Consensus 497 L-----H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 497 L-----HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred H-----HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 1 110000 001234678889999999999999854
No 92
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.98 E-value=2e-05 Score=70.15 Aligned_cols=101 Identities=17% Similarity=0.227 Sum_probs=65.7
Q ss_pred CCEEEEEcccccccccccC------------------------CCCCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCC
Q 023158 42 VKRVVDLCAAPGSWSQPMA------------------------PIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 97 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~ma------------------------p~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDg 97 (286)
-.++|++|||-|.+|..++ ..++|.++++|+.+.. ..++||||+.--
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~---------P~~~FDLIV~SE 114 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFW---------PEGRFDLIVLSE 114 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT------------SS-EEEEEEES
T ss_pred cceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCC---------CCCCeeEEEEeh
Confidence 3589999999999999433 3466777888876642 346899987653
Q ss_pred CCCCCCCCcccHHHH-HHHHHHHHHHHHhcccCCcEEEEEEccC---------CChHHHHHHHHhcCCeeEee
Q 023158 98 APDVTGLHDMDEFVQ-SQLILAGLTVVTHVLKEGGKFIAKIFRG---------KDTSLLYCQLKLFFPVVTFA 160 (286)
Q Consensus 98 ap~~tG~~~~D~~~~-~~L~~aaL~~a~~vLkpGG~fV~Kif~g---------~~~~~l~~~l~~~F~~V~~~ 160 (286)
.. .|.. ...+..++..+...|+|||.+|+-.++. ...+-+...|...|.+|...
T Consensus 115 Vl---------YYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~ 178 (201)
T PF05401_consen 115 VL---------YYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERV 178 (201)
T ss_dssp -G---------GGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEE
T ss_pred Hh---------HcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEE
Confidence 21 2221 2345677888889999999999988752 13566778888888888664
No 93
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.94 E-value=9.9e-06 Score=73.15 Aligned_cols=96 Identities=23% Similarity=0.283 Sum_probs=63.2
Q ss_pred CchhHHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccC-C----------------------CCCcEEEEeeCCChh
Q 023158 20 GWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMA-P----------------------IEGVIQVQGDITNAR 76 (286)
Q Consensus 20 g~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~ma-p----------------------~~gv~~i~gDIt~~~ 76 (286)
+=|+|-|..|+. +-. +....+|+|||||||.-+.-++ . +++++|.++||.+..
T Consensus 13 ~eRtRPa~dLla---~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~ 88 (257)
T COG4106 13 DERTRPARDLLA---RVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK 88 (257)
T ss_pred HhccCcHHHHHh---hCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC
Confidence 347888887764 222 2456799999999999877221 2 344555555555432
Q ss_pred hHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 77 TAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 77 ~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
...++|++.++.+.++-- || -..|.-....|.|||.+-+.|=.
T Consensus 89 ---------p~~~~dllfaNAvlqWlp----dH-------~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 89 ---------PEQPTDLLFANAVLQWLP----DH-------PELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred ---------CCCccchhhhhhhhhhcc----cc-------HHHHHHHHHhhCCCceEEEECCC
Confidence 235789999988765532 33 23455566789999999998854
No 94
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.92 E-value=3.7e-05 Score=72.42 Aligned_cols=112 Identities=21% Similarity=0.191 Sum_probs=73.3
Q ss_pred HHHHHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHH---HHH-Hhc------------CCCCccEEE
Q 023158 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAE---VVI-RHF------------DGCKADLVV 94 (286)
Q Consensus 31 eId~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~---~i~-~~l------------~~~~~DlVl 94 (286)
++.+++ ..+|.+|||+|||+|-.+...+.+..-.++..||-...... .+. +.+ ..++||+|+
T Consensus 153 ~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlvv 230 (295)
T PF06325_consen 153 ELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLVV 230 (295)
T ss_dssp HHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEEE
T ss_pred HHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEEE
Confidence 334444 57889999999999999886665533467788987764321 111 111 125678888
Q ss_pred eCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhcCCeeE
Q 023158 95 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVT 158 (286)
Q Consensus 95 sDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~F~~V~ 158 (286)
++.- ...+...+....++|+|||.||+.=+-......+...++.-|.-+.
T Consensus 231 ANI~--------------~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~g~~~~~ 280 (295)
T PF06325_consen 231 ANIL--------------ADVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQGFELVE 280 (295)
T ss_dssp EES---------------HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHTTEEEEE
T ss_pred ECCC--------------HHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHCCCEEEE
Confidence 7642 2334555666788999999999987777788888888766555443
No 95
>PRK04457 spermidine synthase; Provisional
Probab=97.92 E-value=0.00011 Score=67.84 Aligned_cols=113 Identities=17% Similarity=0.226 Sum_probs=66.8
Q ss_pred CCCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHHHHhc----------------------CCCCccEEEeC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVVIRHF----------------------DGCKADLVVCD 96 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i~~~l----------------------~~~~~DlVlsD 96 (286)
..+.+|||||||.|+.+..+.. .++..++..|+... .++...+.+ ..+++|+|++|
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~-vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQ-VIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHH-HHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 4568999999999998873321 22333333343321 111111111 12478999998
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCC-ChHHHHHHHHhcCCe-eEee
Q 023158 97 GAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK-DTSLLYCQLKLFFPV-VTFA 160 (286)
Q Consensus 97 gap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~-~~~~l~~~l~~~F~~-V~~~ 160 (286)
+- +..+... +. .....+..+.++|+|||.|++-++... ....++..++..|.. +.+.
T Consensus 144 ~~-~~~~~~~--~l----~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~F~~~~~~~ 202 (262)
T PRK04457 144 GF-DGEGIID--AL----CTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESSFEGRVLEL 202 (262)
T ss_pred CC-CCCCCcc--cc----CcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHhcCCcEEEE
Confidence 52 2222111 10 124667888999999999999776543 356677888888975 4444
No 96
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=0.00011 Score=69.30 Aligned_cols=109 Identities=19% Similarity=0.163 Sum_probs=66.0
Q ss_pred CCEEEEEcccccccccccCCC-CCcEEEEeeCCChhhH---HHHHH---------------hcCCCCccEEEeCCCCCCC
Q 023158 42 VKRVVDLCAAPGSWSQPMAPI-EGVIQVQGDITNARTA---EVVIR---------------HFDGCKADLVVCDGAPDVT 102 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map~-~gv~~i~gDIt~~~~~---~~i~~---------------~l~~~~~DlVlsDgap~~t 102 (286)
+.+|||||||.|-.+..++.. |.....-.|+...... +.+.. ... ++||+|+|+-... .
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~-~kfd~IisNPPfh-~ 236 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVE-GKFDLIISNPPFH-A 236 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccc-ccccEEEeCCCcc-C
Confidence 349999999999887744321 2233333343322110 00110 012 3799999996443 3
Q ss_pred CCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhcCCeeEee
Q 023158 103 GLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFA 160 (286)
Q Consensus 103 G~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~F~~V~~~ 160 (286)
|.. ....+..+.+..|.+.|++||.+-+=+-+...... .|+..|..|.+.
T Consensus 237 G~~-----v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~---~L~~~Fg~v~~l 286 (300)
T COG2813 237 GKA-----VVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEK---KLKELFGNVEVL 286 (300)
T ss_pred Ccc-----hhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHH---HHHHhcCCEEEE
Confidence 332 23345667888999999999998766666655554 455679888775
No 97
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.91 E-value=7.3e-05 Score=73.05 Aligned_cols=108 Identities=21% Similarity=0.240 Sum_probs=66.3
Q ss_pred CCEEEEEcccccccccccCCCCCc-EEEEeeCCChhhH---HHH--------------------HHhc--CCCCccEEEe
Q 023158 42 VKRVVDLCAAPGSWSQPMAPIEGV-IQVQGDITNARTA---EVV--------------------IRHF--DGCKADLVVC 95 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map~~gv-~~i~gDIt~~~~~---~~i--------------------~~~l--~~~~~DlVls 95 (286)
|++||||+|-||+||-..+- .|+ .++..|+.+.... +.+ .+.+ .+.+||+|+.
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~-gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAAL-GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHh-cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 89999999999999995542 344 5555555543210 000 0011 2468999999
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc-cCCChHHHHHHHHh
Q 023158 96 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF-RGKDTSLLYCQLKL 152 (286)
Q Consensus 96 Dgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif-~g~~~~~l~~~l~~ 152 (286)
|-+- .+..--++.....-....+..+.++|+|||++++.+- +......+...+..
T Consensus 297 DPPs--F~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~ 352 (393)
T COG1092 297 DPPS--FARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIAR 352 (393)
T ss_pred CCcc--cccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHH
Confidence 9632 1111112233334446667889999999999997654 45566666665544
No 98
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.88 E-value=7.1e-05 Score=75.34 Aligned_cols=125 Identities=14% Similarity=0.110 Sum_probs=77.0
Q ss_pred CCCEEEEEcccccccccccC-CCCCcEEEEeeCCChhhH---HHHH----------------HhcCCCCccEEEeCCCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMA-PIEGVIQVQGDITNARTA---EVVI----------------RHFDGCKADLVVCDGAPD 100 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~ma-p~~gv~~i~gDIt~~~~~---~~i~----------------~~l~~~~~DlVlsDgap~ 100 (286)
++.+|||+|||+|.++..++ ..++..++..|+...... +.+. +.+..++||+|+|+.. .
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPP-Y 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPP-Y 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCC-C
Confidence 34689999999999998654 346677788888753221 1111 1112347999999863 2
Q ss_pred CCCCC---------cccHH-------HHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHh-cCCeeEeeCCC
Q 023158 101 VTGLH---------DMDEF-------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL-FFPVVTFAKPK 163 (286)
Q Consensus 101 ~tG~~---------~~D~~-------~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~-~F~~V~~~KP~ 163 (286)
..-.. +.+.. ..+......+..+.++|+|||.|++.+- -.....+...+.. .|..+.+.|..
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig-~~q~~~v~~~~~~~g~~~~~~~~D~ 295 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG-FKQEEAVTQIFLDHGYNIESVYKDL 295 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC-CchHHHHHHHHHhcCCCceEEEecC
Confidence 21000 00111 1334556677888999999999998653 2233444444443 58888888888
Q ss_pred CCCC
Q 023158 164 SSRN 167 (286)
Q Consensus 164 sSR~ 167 (286)
+.+.
T Consensus 296 ~g~~ 299 (506)
T PRK01544 296 QGHS 299 (506)
T ss_pred CCCc
Confidence 7765
No 99
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.87 E-value=8.5e-05 Score=68.63 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=74.3
Q ss_pred CCCEEEEEcccccccccccCCCC-CcEEEEeeCCChhhHHHHHHhc-------------------------CCCCccEEE
Q 023158 41 GVKRVVDLCAAPGSWSQPMAPIE-GVIQVQGDITNARTAEVVIRHF-------------------------DGCKADLVV 94 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map~~-gv~~i~gDIt~~~~~~~i~~~l-------------------------~~~~~DlVl 94 (286)
...+||+||||.|+.+..+.... ...+...|+... .++...+.+ ..+++|+|+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~-vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEK-VIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHH-HHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 45699999999999887554333 234555566432 222221111 025799999
Q ss_pred eCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEcc----CCChHHHHHHHHhcCCeeEeeCCC-CCCCCc
Q 023158 95 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR----GKDTSLLYCQLKLFFPVVTFAKPK-SSRNSS 169 (286)
Q Consensus 95 sDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~----g~~~~~l~~~l~~~F~~V~~~KP~-sSR~~S 169 (286)
+|.... .+.. .. -.....+..+.+.|+|||.+++-.-. ......+...++..|..|..+... .|-.+.
T Consensus 151 ~D~~~~-~~~~--~~----l~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~F~~v~~~~~~vp~~~~g 223 (270)
T TIGR00417 151 VDSTDP-VGPA--ET----LFTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEAFPITEYYTANIPTYPSG 223 (270)
T ss_pred EeCCCC-CCcc--cc----hhHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHHCCCeEEEEEEcCccccc
Confidence 997421 1110 00 01245667888999999999976321 112344556688889988765322 222222
Q ss_pred hhhhhhhcC
Q 023158 170 IEAFAVCEN 178 (286)
Q Consensus 170 ~E~yvVc~g 178 (286)
.=.|++|..
T Consensus 224 ~~~~~~as~ 232 (270)
T TIGR00417 224 LWTFTIGSK 232 (270)
T ss_pred hhEEEEEEC
Confidence 235677754
No 100
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.87 E-value=8.8e-06 Score=63.51 Aligned_cols=78 Identities=28% Similarity=0.451 Sum_probs=42.8
Q ss_pred EEEEcccccccccccCCC----CCcEEEEeeCCChhhHHHHHHhc-------------------CCCCccEEEeCCCCCC
Q 023158 45 VVDLCAAPGSWSQPMAPI----EGVIQVQGDITNARTAEVVIRHF-------------------DGCKADLVVCDGAPDV 101 (286)
Q Consensus 45 VLDLgaaPGswSq~map~----~gv~~i~gDIt~~~~~~~i~~~l-------------------~~~~~DlVlsDgap~~ 101 (286)
|||||||+|.++..+.+. +..+++..|+.... ++...+.+ ..+++|+|+|-+..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~-l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~-- 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEM-LELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLS-- 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHH-HHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTG--
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHH-HHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCc--
Confidence 799999999988733221 12444445554432 21221111 23589999985431
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHhcccCCc
Q 023158 102 TGLHDMDEFVQSQLILAGLTVVTHVLKEGG 131 (286)
Q Consensus 102 tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG 131 (286)
++ + ..-+.+...+..+.++|||||
T Consensus 78 --~~---~-~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 --LH---H-LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp --GG---G-SSHHHHHHHHHHHHHTEEEEE
T ss_pred --cC---C-CCHHHHHHHHHHHHHHhCCCC
Confidence 11 1 222345778899999999998
No 101
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.86 E-value=9e-05 Score=72.49 Aligned_cols=107 Identities=16% Similarity=0.133 Sum_probs=60.8
Q ss_pred CCCCEEEEEcccccccccccC---------------------------CCC--CcEEEEeeCCChhhHHHHHHhcCCCCc
Q 023158 40 EGVKRVVDLCAAPGSWSQPMA---------------------------PIE--GVIQVQGDITNARTAEVVIRHFDGCKA 90 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~ma---------------------------p~~--gv~~i~gDIt~~~~~~~i~~~l~~~~~ 90 (286)
..+.+|||||||+|+|+..++ .+. .++++++|+.+.. +.+. ..+++|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l--~~~~--~~~~~f 294 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL--RTYR--DRGEKF 294 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH--HHHH--hcCCCC
Confidence 367899999999999987211 121 3456666665421 1111 124579
Q ss_pred cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCC-ChHHHHHHHHh
Q 023158 91 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK-DTSLLYCQLKL 152 (286)
Q Consensus 91 DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~-~~~~l~~~l~~ 152 (286)
|+|++|...-...-..+ .....-....+..+.++|+|||.|++-.-.+. +...+.+.+..
T Consensus 295 DlVilDPP~f~~~k~~l--~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 295 DVIVMDPPKFVENKSQL--MGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred CEEEECCCCCCCChHHH--HHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 99999974322111100 11111234445678899999999996554333 34555555543
No 102
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.85 E-value=4.7e-05 Score=67.25 Aligned_cols=114 Identities=24% Similarity=0.270 Sum_probs=72.6
Q ss_pred HcCCcCCCCEEEEEcccccccccc-------------------------cCC---CCC-cEEEEeeCCChhhHHHHHHhc
Q 023158 35 EFNIFEGVKRVVDLCAAPGSWSQP-------------------------MAP---IEG-VIQVQGDITNARTAEVVIRHF 85 (286)
Q Consensus 35 ~f~l~~~g~~VLDLgaaPGswSq~-------------------------map---~~g-v~~i~gDIt~~~~~~~i~~~l 85 (286)
.|++-+...+|||||||.|..... ++. .++ +.+-|.||+++. +
T Consensus 61 ~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~--------~ 132 (227)
T KOG1271|consen 61 ISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD--------F 132 (227)
T ss_pred hhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc--------c
Confidence 444445556999999999997651 111 223 678899999973 2
Q ss_pred CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhc-CCeeEee
Q 023158 86 DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVTFA 160 (286)
Q Consensus 86 ~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~-F~~V~~~ 160 (286)
..++||+|+--|..+.-+++-.... ..+ ..-+....++|+|||.||+.. +..+..+|...+... |+.+..+
T Consensus 133 ~~~qfdlvlDKGT~DAisLs~d~~~--~r~-~~Y~d~v~~ll~~~gifvItS-CN~T~dELv~~f~~~~f~~~~tv 204 (227)
T KOG1271|consen 133 LSGQFDLVLDKGTLDAISLSPDGPV--GRL-VVYLDSVEKLLSPGGIFVITS-CNFTKDELVEEFENFNFEYLSTV 204 (227)
T ss_pred cccceeEEeecCceeeeecCCCCcc--cce-eeehhhHhhccCCCcEEEEEe-cCccHHHHHHHHhcCCeEEEEee
Confidence 3468999998887665554421100 000 223456778999999999743 334567787777665 6665544
No 103
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.85 E-value=0.00022 Score=67.42 Aligned_cols=103 Identities=19% Similarity=0.176 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhH-----HHHH-------------Hhc
Q 023158 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTA-----EVVI-------------RHF 85 (286)
Q Consensus 24 Rsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~-----~~i~-------------~~l 85 (286)
||-+|...+.....=+ .|++|||+||+-|.++-.|..-..-.++..|-+..-.. +.+. +++
T Consensus 99 rSd~KW~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~L 177 (315)
T PF08003_consen 99 RSDWKWDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDL 177 (315)
T ss_pred cccchHHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhc
Confidence 5666766655555322 57899999999999999887642233455554433211 1111 111
Q ss_pred C-CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 86 D-GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 86 ~-~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
. .+.||+|+|-|-.. |-.+. ...|......|+|||.+|+.++
T Consensus 178 p~~~~FDtVF~MGVLY----Hrr~P-------l~~L~~Lk~~L~~gGeLvLETl 220 (315)
T PF08003_consen 178 PNLGAFDTVFSMGVLY----HRRSP-------LDHLKQLKDSLRPGGELVLETL 220 (315)
T ss_pred cccCCcCEEEEeeehh----ccCCH-------HHHHHHHHHhhCCCCEEEEEEe
Confidence 1 35799999988432 22232 4567788899999999998764
No 104
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.83 E-value=7.9e-05 Score=69.54 Aligned_cols=109 Identities=22% Similarity=0.215 Sum_probs=65.4
Q ss_pred CCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhH---HHHH----------------HhcCCCCccEEEeCCCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTA---EVVI----------------RHFDGCKADLVVCDGAPD 100 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~---~~i~----------------~~l~~~~~DlVlsDgap~ 100 (286)
++.+|||+|||+|.++..++. .++..++..|+...... +.+. +.+.+.+||+|+||.. .
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPP-y 199 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPP-Y 199 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCC-C
Confidence 457999999999999886653 34566677777644321 1110 1122347999999852 2
Q ss_pred CC-C-CCcc------cHH-------HHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHh
Q 023158 101 VT-G-LHDM------DEF-------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 152 (286)
Q Consensus 101 ~t-G-~~~~------D~~-------~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~ 152 (286)
.. + .... +.. ....+....+..+.++|+|||.+++.+-. +...+...+..
T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--~~~~v~~~~~~ 264 (284)
T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN--SMEALEEAYPD 264 (284)
T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--CHHHHHHHHHh
Confidence 11 1 0000 010 12345677788999999999999988753 22455555543
No 105
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=97.81 E-value=1e-05 Score=74.61 Aligned_cols=135 Identities=24% Similarity=0.227 Sum_probs=70.9
Q ss_pred CCCEEEEEccc------cccccc-ccCCCCCcEEEEeeCCChhh------HHHHHHhcCCCCccEEEeCCC-C---CCCC
Q 023158 41 GVKRVVDLCAA------PGSWSQ-PMAPIEGVIQVQGDITNART------AEVVIRHFDGCKADLVVCDGA-P---DVTG 103 (286)
Q Consensus 41 ~g~~VLDLgaa------PGswSq-~map~~gv~~i~gDIt~~~~------~~~i~~~l~~~~~DlVlsDga-p---~~tG 103 (286)
..+||++|||| ||+--. .+-| .|...+--||.+--. ...-.......++|+|+|||- + ++.|
T Consensus 61 ~nMrVlHlGAgSdkGvaPGt~VLrqwlP-~~ailvDnDi~d~vSDa~~~~~~Dc~t~~~~~k~DlIiSDmYd~~~k~~~~ 139 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPGTAVLRQWLP-EDAILVDNDIRDYVSDADQSIVGDCRTYMPPDKFDLIISDMYDGRTKNCDG 139 (299)
T ss_dssp TT-EEEEES---TTSB-HHHHHHHHHS--TT-EEEEEESS--B-SSSEEEES-GGGEEESS-EEEEEE----TTS-SS-S
T ss_pred cCcEEEEecccccCCcCCchHHHHHhCC-CCcEEEecchhhhccccCCceeccccccCCCCcccEEEEeccccccccccc
Confidence 46899999875 454221 2233 466666666655310 000000112468999999985 1 1111
Q ss_pred CCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhcCCeeEeeCCCCCCCCchhhhhhhcCCCCC
Q 023158 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPP 182 (286)
Q Consensus 104 ~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~yvVc~gf~~~ 182 (286)
..... ....--...++.+-|+-||++.+|+-...-..+|++.++. |+..+++.- +--.+|+|.|++|.+|.+.
T Consensus 140 ~n~~~----~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~~-F~~wt~FcT-~VNtSSSEaFLigiNYLg~ 212 (299)
T PF06460_consen 140 ENNSK----EGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMGY-FSWWTCFCT-AVNTSSSEAFLIGINYLGK 212 (299)
T ss_dssp ----------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHTT-EEEEEEEEE-GGGTTSS-EEEEEEEE-SS
T ss_pred ccCCc----cccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHhh-cccEEEEec-ccCccccceeEEeeeccCc
Confidence 11111 1112334577889999999999999877777788876654 766666543 3446789999999999987
No 106
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.81 E-value=2e-05 Score=69.87 Aligned_cols=100 Identities=10% Similarity=0.086 Sum_probs=50.4
Q ss_pred cCCCCEEEEEcccccccccccCCCC--CcEEEEeeCCChhhHHHHHHhcCC----CCccEEEeCCCCCCCCCCcccHHHH
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIE--GVIQVQGDITNARTAEVVIRHFDG----CKADLVVCDGAPDVTGLHDMDEFVQ 112 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~--gv~~i~gDIt~~~~~~~i~~~l~~----~~~DlVlsDgap~~tG~~~~D~~~~ 112 (286)
++++.+|||+|||+|..+..++... +..++..|+..... +...+.+.. ..+.++..|+..........|-...
T Consensus 70 ~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~-~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~ 148 (205)
T PRK13944 70 PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELA-IYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIV 148 (205)
T ss_pred CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEE
Confidence 3678999999999999987554321 34677778875432 222221110 1133344443211100001111000
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 113 SQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 113 ~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
............++|+|||.+++-+..
T Consensus 149 ~~~~~~~~~~l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 149 TAAASTIPSALVRQLKDGGVLVIPVEE 175 (205)
T ss_pred ccCcchhhHHHHHhcCcCcEEEEEEcC
Confidence 000011224567899999999886543
No 107
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.81 E-value=0.00037 Score=63.91 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=62.5
Q ss_pred CCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhH---HHH----------------HHhcCCCCccEEEeCCCCCC
Q 023158 42 VKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTA---EVV----------------IRHFDGCKADLVVCDGAPDV 101 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~---~~i----------------~~~l~~~~~DlVlsDgap~~ 101 (286)
..+|||||||+|.++..++. .++..++..|+...... +.+ ...+ .++||+|++|-.-..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~-~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTAL-RGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhc-CCCEeEEEECCCCCC
Confidence 45899999999998874431 23334444444432210 000 0011 246999999974322
Q ss_pred CCC-Ccc-------cHH-------HHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHh
Q 023158 102 TGL-HDM-------DEF-------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 152 (286)
Q Consensus 102 tG~-~~~-------D~~-------~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~ 152 (286)
++. ... +.. ...+.+...+..+.++|+|||.|++-+-. .....+...++.
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~-~~~~~v~~~l~~ 230 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE-RQAPLAVEAFAR 230 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-chHHHHHHHHHH
Confidence 221 000 000 12345677888899999999999987643 344566666654
No 108
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.79 E-value=1.2e-05 Score=76.79 Aligned_cols=47 Identities=30% Similarity=0.320 Sum_probs=31.6
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCC
Q 023158 88 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 141 (286)
Q Consensus 88 ~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~ 141 (286)
.+||+|-|-.+.+- .+.+.+-++..|..+...|+|||.||..+..+.
T Consensus 144 ~~FDvVScQFalHY-------~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 144 RKFDVVSCQFALHY-------AFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp S-EEEEEEES-GGG-------GGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred CCcceeehHHHHHH-------hcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 36788877665321 112335567789999999999999999887763
No 109
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.77 E-value=2e-05 Score=70.11 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=50.2
Q ss_pred cCCCCEEEEEcccccccccccCCCC--CcEEEEeeCCChhhHHHHHHhc--------------------CCCCccEEEeC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIE--GVIQVQGDITNARTAEVVIRHF--------------------DGCKADLVVCD 96 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~--gv~~i~gDIt~~~~~~~i~~~l--------------------~~~~~DlVlsD 96 (286)
++++.+|||+|||+|.++..++... ...++..|+.... ++...+.+ ...+||+|+++
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~-~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~ 153 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPEL-AEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT 153 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHH-HHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence 4688999999999999998665432 2345666665432 22211111 11357777777
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEE
Q 023158 97 GAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 97 gap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 137 (286)
+++. .......+.|+|||.||+-+
T Consensus 154 ~~~~-----------------~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 154 AAGP-----------------KIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcc-----------------cccHHHHHhcCcCcEEEEEE
Confidence 5421 11234568899999999854
No 110
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.76 E-value=9e-05 Score=65.66 Aligned_cols=93 Identities=22% Similarity=0.213 Sum_probs=54.1
Q ss_pred CEEEEEcccccccccccCCC-CCcEEEEeeCCChhhHHHHHHhcC----CCCccEEEeCCCCC-CCCCCcccHHHHHHH-
Q 023158 43 KRVVDLCAAPGSWSQPMAPI-EGVIQVQGDITNARTAEVVIRHFD----GCKADLVVCDGAPD-VTGLHDMDEFVQSQL- 115 (286)
Q Consensus 43 ~~VLDLgaaPGswSq~map~-~gv~~i~gDIt~~~~~~~i~~~l~----~~~~DlVlsDgap~-~tG~~~~D~~~~~~L- 115 (286)
.+|||+|||+|+++..++.. +++.++..|++.. .++...+.+. ...+.++..|.... ..+ ..|-.....+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~-~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~--~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPE-QAEVGRERIRALGLQGRIRIFYRDSAKDPFPD--TYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHH-HHHHHHHHHHhcCCCcceEEEecccccCCCCC--CCCEeehHHHH
Confidence 37999999999999876543 4677778888543 3333332221 11234455444211 011 1221111111
Q ss_pred -----HHHHHHHHHhcccCCcEEEEEEc
Q 023158 116 -----ILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 116 -----~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
....+..+.++|+|||.|++..+
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 24678889999999999998654
No 111
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.76 E-value=4.2e-05 Score=75.67 Aligned_cols=86 Identities=15% Similarity=0.097 Sum_probs=52.7
Q ss_pred CCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHh--------------------cCCCCccEEEeCCCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRH--------------------FDGCKADLVVCDGAPD 100 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~--------------------l~~~~~DlVlsDgap~ 100 (286)
++.+|||||||+|.++..++.. +..++..|+....... ..+. +..++||+|+|..+..
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~-a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKK-NESINGHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHH-HHHHhccCCceEEEEecccccccCCCCCCEEEEehhhhHH
Confidence 5679999999999999866543 3355666665543221 1111 1223456666554321
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEE
Q 023158 101 VTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 101 ~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 137 (286)
. + .-.....++..+.++|||||.|+++-
T Consensus 115 ~-----l----~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 115 Y-----L----SDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred h-----C----CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 1 1 11123577888999999999999874
No 112
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.75 E-value=2.4e-05 Score=69.80 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=48.4
Q ss_pred cCCCCEEEEEcccccccccccCCCC--CcEEEEeeCCChhhHHHHHHhc--------------------CCCCccEEEeC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIE--GVIQVQGDITNARTAEVVIRHF--------------------DGCKADLVVCD 96 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~--gv~~i~gDIt~~~~~~~i~~~l--------------------~~~~~DlVlsD 96 (286)
++++.+|||+|||+|..+..++... +.+++..|+.... .+...+.+ ...+||+|+++
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~-~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~ 152 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPEL-AEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT 152 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHH-HHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence 4688999999999999987554332 2456666665432 21111111 12356666665
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEE
Q 023158 97 GAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 97 gap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 137 (286)
++. + .......+.|||||.||+-+
T Consensus 153 ~~~-----~------------~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 153 AAG-----P------------DIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCc-----c------------cchHHHHHhhCCCcEEEEEE
Confidence 531 1 11123456899999999854
No 113
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.74 E-value=8.3e-05 Score=77.60 Aligned_cols=90 Identities=19% Similarity=0.081 Sum_probs=53.7
Q ss_pred CCCEEEEEcccccccccccCCC---------------------------C--CcEEEEeeCCChhhHHHHHHhcCCCCcc
Q 023158 41 GVKRVVDLCAAPGSWSQPMAPI---------------------------E--GVIQVQGDITNARTAEVVIRHFDGCKAD 91 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map~---------------------------~--gv~~i~gDIt~~~~~~~i~~~l~~~~~D 91 (286)
.+.+|||||||+|+++..++.- . .+.++++|+.+.. +.+ +++||
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l------~~~-~~~fD 610 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWL------KEA-REQFD 610 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHH------HHc-CCCcC
Confidence 5789999999999999844321 1 2344444443310 112 35899
Q ss_pred EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEE
Q 023158 92 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 92 lVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 137 (286)
+|++|...-..+....+......-....+..+.++|+|||.+++..
T Consensus 611 lIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 611 LIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred EEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 9999964222211100111122334556777899999999998654
No 114
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.73 E-value=9.6e-06 Score=62.78 Aligned_cols=77 Identities=21% Similarity=0.197 Sum_probs=43.4
Q ss_pred EEEcccccccccccCC-CCCcEEEEeeCCChhhH---HHHHH------------------hcCCCCccEEEeCCCCCCCC
Q 023158 46 VDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTA---EVVIR------------------HFDGCKADLVVCDGAPDVTG 103 (286)
Q Consensus 46 LDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~---~~i~~------------------~l~~~~~DlVlsDgap~~tG 103 (286)
||+|||+|.++..+.. .++.++...|++..... +++.+ ....++||+|++-.....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~-- 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH-- 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh--
Confidence 7999999999996643 25677778888765431 11111 001148999998764322
Q ss_pred CCcccHHHHHHHHHHHHHHHHhcccCCcEE
Q 023158 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKF 133 (286)
Q Consensus 104 ~~~~D~~~~~~L~~aaL~~a~~vLkpGG~f 133 (286)
+. -...++..+.++|+|||.|
T Consensus 79 ---l~------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 79 ---LE------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ----S-------HHHHHHHHTTT-TSS-EE
T ss_pred ---hh------hHHHHHHHHHHHcCCCCCC
Confidence 21 2357888999999999986
No 115
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.73 E-value=9.2e-05 Score=69.96 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=58.4
Q ss_pred CEEEEEcccccccccccCC-CCCcEEEEeeCCChhhH---HHHH----------------HhcCCCCccEEEeCCCCCCC
Q 023158 43 KRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTA---EVVI----------------RHFDGCKADLVVCDGAPDVT 102 (286)
Q Consensus 43 ~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~---~~i~----------------~~l~~~~~DlVlsDgap~~t 102 (286)
.+|||+|||+|.++..++. .++..++..|+...... +.+. +.+...+||+|+||.. ...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPP-yi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPP-YVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCC-CCC
Confidence 6899999999999886543 24556666666543221 0110 1122347999999842 111
Q ss_pred -C-CCccc------H-------HHHHHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 103 -G-LHDMD------E-------FVQSQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 103 -G-~~~~D------~-------~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
+ ..... . .....+....+..+.++|+|||.+++.+-.
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 0 00000 0 012355677888999999999999987654
No 116
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.72 E-value=0.00022 Score=52.66 Aligned_cols=82 Identities=20% Similarity=0.205 Sum_probs=53.1
Q ss_pred EEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHH---Hh------------------cCCCCccEEEeCCCCCCC
Q 023158 44 RVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVI---RH------------------FDGCKADLVVCDGAPDVT 102 (286)
Q Consensus 44 ~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~---~~------------------l~~~~~DlVlsDgap~~t 102 (286)
+|+|+|||+|..+..+....+..++..|+...... ... .. ....++|+|+++......
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALE-LARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHH-HHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 58999999999998666544556666676543221 111 00 023468888888753221
Q ss_pred CCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 103 GLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 103 G~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
.......+..+.++|+|||.+++.
T Consensus 80 ----------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 ----------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ----------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 233466778888899999999875
No 117
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=97.70 E-value=0.00019 Score=63.31 Aligned_cols=123 Identities=20% Similarity=0.139 Sum_probs=70.9
Q ss_pred chhHHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHH---HHhcCCCCccEEEeC
Q 023158 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVV---IRHFDGCKADLVVCD 96 (286)
Q Consensus 21 ~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i---~~~l~~~~~DlVlsD 96 (286)
-|+=+.-||. ++++++++|+|||+|+.+..++. .|..+++..|-.+. .++.+ .++|+-..+.+|-.|
T Consensus 22 IRal~ls~L~--------~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~-a~~~~~~N~~~fg~~n~~vv~g~ 92 (187)
T COG2242 22 IRALTLSKLR--------PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEE-ALELIERNAARFGVDNLEVVEGD 92 (187)
T ss_pred HHHHHHHhhC--------CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHH-HHHHHHHHHHHhCCCcEEEEecc
Confidence 4555555554 58899999999999998886552 23445555554432 22222 223332233344333
Q ss_pred CCCCC-CCCCcccHH-H-HHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhc
Q 023158 97 GAPDV-TGLHDMDEF-V-QSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF 153 (286)
Q Consensus 97 gap~~-tG~~~~D~~-~-~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~ 153 (286)
+. .. .+....|.. + ...-+...|+.+...|||||.+|+-.-+-++...+...++.+
T Consensus 93 Ap-~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~ 151 (187)
T COG2242 93 AP-EALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQL 151 (187)
T ss_pred ch-HhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHc
Confidence 31 11 011001100 0 001135678889999999999999999888877777777663
No 118
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.69 E-value=0.00024 Score=66.71 Aligned_cols=102 Identities=13% Similarity=0.132 Sum_probs=61.1
Q ss_pred cCCCCEEEEEcccccccccccCC-CC-CcEEEEeeCCChhhH---HHHHHhcCCCCccEEEeCCCC------CC------
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAP-IE-GVIQVQGDITNARTA---EVVIRHFDGCKADLVVCDGAP------DV------ 101 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map-~~-gv~~i~gDIt~~~~~---~~i~~~l~~~~~DlVlsDgap------~~------ 101 (286)
+.++.+|||||||+|.++..+.. ++ +..++..|+...+.. +++...+.+-++..|.+|+.- ..
T Consensus 61 ~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 61 TGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred hCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeE
Confidence 45778999999999999986543 22 577888898875422 222222222233445566521 00
Q ss_pred -----CCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChH
Q 023158 102 -----TGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTS 144 (286)
Q Consensus 102 -----tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~ 144 (286)
+-+++++. .-+...|..+.++|+|||.|++-+-...+..
T Consensus 141 ~~~~gs~~~~~~~----~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~ 184 (301)
T TIGR03438 141 GFFPGSTIGNFTP----EEAVAFLRRIRQLLGPGGGLLIGVDLVKDPA 184 (301)
T ss_pred EEEecccccCCCH----HHHHHHHHHHHHhcCCCCEEEEeccCCCCHH
Confidence 01122221 1235667888899999999998765544443
No 119
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.69 E-value=5.5e-05 Score=67.14 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=60.0
Q ss_pred HHHHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhH--HHHHHhc---------------CCCCccEEE
Q 023158 32 IDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTA--EVVIRHF---------------DGCKADLVV 94 (286)
Q Consensus 32 Id~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~--~~i~~~l---------------~~~~~DlVl 94 (286)
+.+..+++++ .++||||||.|--+..++. .|..+...|++..... +++.+.- -.+.+|+|+
T Consensus 22 v~~a~~~~~~-g~~LDlgcG~GRNalyLA~-~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~ 99 (192)
T PF03848_consen 22 VLEAVPLLKP-GKALDLGCGEGRNALYLAS-QGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIV 99 (192)
T ss_dssp HHHHCTTS-S-SEEEEES-TTSHHHHHHHH-TT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEE
T ss_pred HHHHHhhcCC-CcEEEcCCCCcHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEEE
Confidence 3344566665 4999999999999997775 4888888888875432 2222110 024577777
Q ss_pred eCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 95 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 95 sDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
|.... .+...++....+..+...++|||.+++-.|
T Consensus 100 st~v~---------~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 100 STVVF---------MFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp EESSG---------GGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEe---------ccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 65432 122334445667777899999999988655
No 120
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.69 E-value=0.00017 Score=64.25 Aligned_cols=93 Identities=13% Similarity=0.103 Sum_probs=57.4
Q ss_pred HHcCCcCCCCEEEEEcccccccccccCCC-CCcEEEEeeCCChhhHHHHHHh--------------cCCCCccEEEeCCC
Q 023158 34 EEFNIFEGVKRVVDLCAAPGSWSQPMAPI-EGVIQVQGDITNARTAEVVIRH--------------FDGCKADLVVCDGA 98 (286)
Q Consensus 34 ~~f~l~~~g~~VLDLgaaPGswSq~map~-~gv~~i~gDIt~~~~~~~i~~~--------------l~~~~~DlVlsDga 98 (286)
+....+.++.+|||+|||+|.++..+... ++..++..|+..... +...+. +..++||+|++.+.
T Consensus 36 ~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l-~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 36 RALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAV-EKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGV 114 (204)
T ss_pred HHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHH-HHHHhhCCCCcEEEeeccCCCCCCCEEEEEECCh
Confidence 33334567889999999999999877653 567777788876532 222221 12356888888764
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 99 PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 99 p~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
.. | ++. ..+..++..+.+++ ++.+++-.+
T Consensus 115 L~----h-l~p----~~~~~~l~el~r~~--~~~v~i~e~ 143 (204)
T TIGR03587 115 LI----H-INP----DNLPTAYRELYRCS--NRYILIAEY 143 (204)
T ss_pred hh----h-CCH----HHHHHHHHHHHhhc--CcEEEEEEe
Confidence 31 1 111 22456777777777 345554433
No 121
>PLN03075 nicotianamine synthase; Provisional
Probab=97.67 E-value=0.0002 Score=67.52 Aligned_cols=89 Identities=10% Similarity=0.032 Sum_probs=51.7
Q ss_pred CCCEEEEEcccccccccc--c-CCCCCcEEEEeeCCChhhH--HHHH-H-----------------hc-CCCCccEEEeC
Q 023158 41 GVKRVVDLCAAPGSWSQP--M-APIEGVIQVQGDITNARTA--EVVI-R-----------------HF-DGCKADLVVCD 96 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~--m-ap~~gv~~i~gDIt~~~~~--~~i~-~-----------------~l-~~~~~DlVlsD 96 (286)
+..+|+|+|||||..|.- + .-.++.+++..|+...... ++.. . .. ..++||+|+++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999999977651 1 1123444444444432110 0110 0 00 12579999998
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 97 GAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 97 gap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
... .+|. .--..++....++|+|||.|++-.-.
T Consensus 203 ALi------~~dk----~~k~~vL~~l~~~LkPGG~Lvlr~~~ 235 (296)
T PLN03075 203 ALV------GMDK----EEKVKVIEHLGKHMAPGALLMLRSAH 235 (296)
T ss_pred ccc------cccc----ccHHHHHHHHHHhcCCCcEEEEeccc
Confidence 322 1210 00256788889999999999998743
No 122
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.63 E-value=0.00015 Score=70.82 Aligned_cols=133 Identities=11% Similarity=-0.019 Sum_probs=72.7
Q ss_pred CCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHHH---------------------HhcCCCCccEEEeCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVVI---------------------RHFDGCKADLVVCDGA 98 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i~---------------------~~l~~~~~DlVlsDga 98 (286)
.+..+||||||+|.++..++. .|+..++..|+.......... +.+..+.+|.|++...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 467999999999999996653 355667777776554321111 1223345566655432
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhcC-CeeEeeCCCCCC-CCchhhhhhh
Q 023158 99 PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFF-PVVTFAKPKSSR-NSSIEAFAVC 176 (286)
Q Consensus 99 p~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~F-~~V~~~KP~sSR-~~S~E~yvVc 176 (286)
..|..- .+.+. .....+..+.++|+|||.+.+++-...-.......+.... -.+...+..--+ .+--|..+..
T Consensus 202 dPW~Kk---rHRRl--v~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~~~~~~~~i~TkyE~r~~~ 276 (390)
T PRK14121 202 VPWDKK---PHRRV--ISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEIKKNAQLEVSSKYEDRWKK 276 (390)
T ss_pred CCcccc---chhhc--cHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeecccCCCCCCCCHHHHHHHH
Confidence 111111 01111 1356788999999999999998765544444444443321 112222221111 2345666666
Q ss_pred cC
Q 023158 177 EN 178 (286)
Q Consensus 177 ~g 178 (286)
+|
T Consensus 277 ~G 278 (390)
T PRK14121 277 QN 278 (390)
T ss_pred CC
Confidence 66
No 123
>PLN02366 spermidine synthase
Probab=97.58 E-value=0.00039 Score=65.87 Aligned_cols=111 Identities=17% Similarity=0.183 Sum_probs=65.4
Q ss_pred CCCCEEEEEcccccccccccCCCCCc-EEEEeeCCChhhHHHH--------------------------HHhcCCCCccE
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGV-IQVQGDITNARTAEVV--------------------------IRHFDGCKADL 92 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv-~~i~gDIt~~~~~~~i--------------------------~~~l~~~~~Dl 92 (286)
....+||+||||.|+.+..+...+++ .+...||-.. .++.. .+...++++|+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~-Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKM-VIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHH-HHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 45789999999999988755444432 2333343321 11110 11112357999
Q ss_pred EEeCCCCCCCCCCcccHHHHHHH-HHHHHHHHHhcccCCcEEEEEE---c-cCCChHHHHHHHHhcC-CeeEe
Q 023158 93 VVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKI---F-RGKDTSLLYCQLKLFF-PVVTF 159 (286)
Q Consensus 93 VlsDgap~~tG~~~~D~~~~~~L-~~aaL~~a~~vLkpGG~fV~Ki---f-~g~~~~~l~~~l~~~F-~~V~~ 159 (286)
|++|..... |.. ..| ....+..+.+.|+|||.|+.-. | ..+....+...|+..| ..|..
T Consensus 169 Ii~D~~dp~-~~~-------~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F~~~v~~ 233 (308)
T PLN02366 169 IIVDSSDPV-GPA-------QELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETFKGSVNY 233 (308)
T ss_pred EEEcCCCCC-Cch-------hhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHCCCceeE
Confidence 999974221 210 111 2445677889999999998632 2 2334566778888888 45543
No 124
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.56 E-value=0.00076 Score=59.52 Aligned_cols=87 Identities=23% Similarity=0.236 Sum_probs=53.6
Q ss_pred CCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhc---------------------CCCCccEEEeCCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHF---------------------DGCKADLVVCDGAP 99 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l---------------------~~~~~DlVlsDgap 99 (286)
.+.+|||+|||+|.++..++.. +..++..|+... .++...+.+ ...++|+|++....
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~-~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEE-NIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHH-HHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 4789999999999998866542 445666676543 221111111 01457777765422
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccC
Q 023158 100 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 140 (286)
Q Consensus 100 ~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g 140 (286)
.. .. -....+..+.++|+|||.+++.....
T Consensus 123 ~~-----~~------~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 123 EH-----VP------DPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred Hh-----CC------CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 11 11 12456788889999999998876543
No 125
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.52 E-value=0.00027 Score=66.10 Aligned_cols=94 Identities=15% Similarity=0.181 Sum_probs=57.4
Q ss_pred cCCCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHHHHhcC----CCCccEEEeCCCCC-CC---------C
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVVIRHFD----GCKADLVVCDGAPD-VT---------G 103 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i~~~l~----~~~~DlVlsDgap~-~t---------G 103 (286)
++++.+|||+|||+|.++..+.. .|+++++..|+ +..++...+... ...+.++.+|.-.+ .. .
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~--~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~ 224 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL--PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRI 224 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec--HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhh
Confidence 46788999999999999986643 36667777776 334433322221 12355566664311 10 0
Q ss_pred CCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 104 ~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
+|+.+ -+.+..++..+.+.|+|||.+++--+
T Consensus 225 lh~~~----~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 225 LYSAN----EQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred hhcCC----hHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 12221 12345678899999999999987644
No 126
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.51 E-value=0.00049 Score=61.39 Aligned_cols=87 Identities=23% Similarity=0.218 Sum_probs=55.7
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHh--------------------cCCCCccEEEeCCCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRH--------------------FDGCKADLVVCDGAP 99 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~--------------------l~~~~~DlVlsDgap 99 (286)
.++.+|||||||+|.++..+... +..++..|+.... ++...+. ..++++|+|++....
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL-GADVTGIDASEEN-IEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHH-HHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 46789999999999998866543 5566666765432 1111110 023578888875432
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 100 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 100 ~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
...+ + ....+..+.++|+|||.|++..+.
T Consensus 125 ~~~~----~-------~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 125 EHVP----D-------PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred hccC----C-------HHHHHHHHHHHcCCCcEEEEEecC
Confidence 1111 1 135678889999999999987664
No 127
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.51 E-value=0.00027 Score=64.64 Aligned_cols=105 Identities=25% Similarity=0.360 Sum_probs=70.5
Q ss_pred CCCEEEEEccccccccc-----------------------ccCCC------CCcEEEEeeCCChhhHHHHHHhcCCCCcc
Q 023158 41 GVKRVVDLCAAPGSWSQ-----------------------PMAPI------EGVIQVQGDITNARTAEVVIRHFDGCKAD 91 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq-----------------------~map~------~gv~~i~gDIt~~~~~~~i~~~l~~~~~D 91 (286)
.|.+|||-|.|=|-.+. .++|+ .++.+|.||+.+ +++.|+++.||
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e------~V~~~~D~sfD 207 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYE------VVKDFDDESFD 207 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHH------HHhcCCccccc
Confidence 48999999999998876 12232 246777887765 34678888999
Q ss_pred EEEeCCCCCCCCCCcccHHHHHHH-HHHHHHHHHhcccCCcEEEE------EEccCCChH-HHHHHHHhc-CCeeEee
Q 023158 92 LVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIA------KIFRGKDTS-LLYCQLKLF-FPVVTFA 160 (286)
Q Consensus 92 lVlsDgap~~tG~~~~D~~~~~~L-~~aaL~~a~~vLkpGG~fV~------Kif~g~~~~-~l~~~l~~~-F~~V~~~ 160 (286)
.|++|-.- .+ . .-+| .+.-..+.+++|||||.+.- |-++|.+.. .+...|++. |+.|...
T Consensus 208 aIiHDPPR-fS------~--AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v~~~ 276 (287)
T COG2521 208 AIIHDPPR-FS------L--AGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVVKKV 276 (287)
T ss_pred eEeeCCCc-cc------h--hhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceeeeee
Confidence 99999632 11 0 0111 13445778999999999873 445666644 456667664 8877654
No 128
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.49 E-value=0.00028 Score=62.65 Aligned_cols=54 Identities=26% Similarity=0.374 Sum_probs=40.6
Q ss_pred CCcCCCCEEEEEcccccccccccCC--------------------CCCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeC
Q 023158 37 NIFEGVKRVVDLCAAPGSWSQPMAP--------------------IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCD 96 (286)
Q Consensus 37 ~l~~~g~~VLDLgaaPGswSq~map--------------------~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsD 96 (286)
.++++|.+|||||||.|.....+.. -.|+.++|+|+.+. ...+.++.||.|+..
T Consensus 9 ~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~g------L~~f~d~sFD~VIls 82 (193)
T PF07021_consen 9 EWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLDEG------LADFPDQSFDYVILS 82 (193)
T ss_pred HHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHHHh------HhhCCCCCccEEehH
Confidence 4678999999999999998773221 14677888888763 235677899999864
No 129
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.45 E-value=0.00018 Score=63.62 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=49.7
Q ss_pred cCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhc--------------------CCCCccEEEeCCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHF--------------------DGCKADLVVCDGA 98 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l--------------------~~~~~DlVlsDga 98 (286)
++++.+|||+|||+|.++..++...+ .++..|+... .++...+.+ ..++||+|+++++
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~-~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKT-LQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHH-HHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 36789999999999998875554322 4555566532 222222111 1145777777653
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 99 PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 99 p~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
.. .......+.|+|||.+++-+.
T Consensus 154 ~~-----------------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 AP-----------------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ch-----------------hhhHHHHHhcCCCcEEEEEEc
Confidence 21 112345689999999998765
No 130
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00042 Score=63.85 Aligned_cols=92 Identities=22% Similarity=0.190 Sum_probs=62.9
Q ss_pred cCCCCEEEEEcccccccccccCCC-----------------------------CC-cEEEEeeCCChhhHHHHHHhcCCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPI-----------------------------EG-VIQVQGDITNARTAEVVIRHFDGC 88 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~-----------------------------~g-v~~i~gDIt~~~~~~~i~~~l~~~ 88 (286)
+.+|.+|||.|.|.|+.|..++.. .+ |++..+|+++.. .+.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~---------~~~ 162 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI---------DEE 162 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc---------ccc
Confidence 468999999999999999844421 11 334444444431 234
Q ss_pred CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhc-CC
Q 023158 89 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FP 155 (286)
Q Consensus 89 ~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~-F~ 155 (286)
.+|.|+.|+. |+ ..++.-+..+|+|||.+++=.-.-+........|+.. |-
T Consensus 163 ~vDav~LDmp---------~P-------W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 163 DVDAVFLDLP---------DP-------WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred ccCEEEEcCC---------Ch-------HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 7999999983 11 4678888999999999997655555666666666665 53
No 131
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.43 E-value=0.00025 Score=65.48 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=26.5
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 88 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 88 ~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
++||+|+|-... +-++ ......++....++|+|||.|++-
T Consensus 202 ~~fD~I~crnvl-----~yf~----~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 202 GDFDLIFCRNVL-----IYFD----EPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred CCCCEEEechhH-----HhCC----HHHHHHHHHHHHHHhCCCeEEEEE
Confidence 457777774321 1111 233467889999999999999974
No 132
>PRK03612 spermidine synthase; Provisional
Probab=97.43 E-value=0.00074 Score=68.27 Aligned_cols=109 Identities=17% Similarity=0.172 Sum_probs=62.3
Q ss_pred CCCCEEEEEcccccccccccCCCCC-cEEEEeeCCChhhHHHH-----------------------------HHhcCCCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEG-VIQVQGDITNARTAEVV-----------------------------IRHFDGCK 89 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~g-v~~i~gDIt~~~~~~~i-----------------------------~~~l~~~~ 89 (286)
++..+|||+|||.|.++..+...++ .++...||... .++.. .+.. .++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~-vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPA-MTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-AEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHH-HHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-CCC
Confidence 4568999999999999874433333 23334444321 11111 1111 257
Q ss_pred ccEEEeCCCCCCCCCCcccHHHHHHH-HHHHHHHHHhcccCCcEEEEEE----ccCCChHHHHHHHHhc-CCeeE
Q 023158 90 ADLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKI----FRGKDTSLLYCQLKLF-FPVVT 158 (286)
Q Consensus 90 ~DlVlsDgap~~tG~~~~D~~~~~~L-~~aaL~~a~~vLkpGG~fV~Ki----f~g~~~~~l~~~l~~~-F~~V~ 158 (286)
+|+|++|.. +..+. .. ..| ....++.+.++|+|||.|++.. ++.+....+...++.. | .|.
T Consensus 374 fDvIi~D~~-~~~~~---~~---~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf-~v~ 440 (521)
T PRK03612 374 FDVIIVDLP-DPSNP---AL---GKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL-ATT 440 (521)
T ss_pred CCEEEEeCC-CCCCc---ch---hccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC-EEE
Confidence 999999963 22110 00 011 1345677889999999999854 2333345666777776 7 443
No 133
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.39 E-value=0.00018 Score=65.84 Aligned_cols=131 Identities=17% Similarity=0.160 Sum_probs=73.4
Q ss_pred CCCCCCCCCchHHHHHHHhCchhHHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHH
Q 023158 1 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEV 80 (286)
Q Consensus 1 m~~~~~~~rD~y~r~Ak~~g~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~ 80 (286)
|.++++-..|.| .- -+-.|-+ .+||-+ +.+-.....++|+|||+|--++-+++.+- .+|..|+... +++.
T Consensus 1 ~~~~~~~~a~~Y-~~-ARP~YPt-dw~~~i-----a~~~~~h~~a~DvG~G~Gqa~~~iae~~k-~VIatD~s~~-mL~~ 70 (261)
T KOG3010|consen 1 MAKLFDKQAADY-LN-ARPSYPT-DWFKKI-----ASRTEGHRLAWDVGTGNGQAARGIAEHYK-EVIATDVSEA-MLKV 70 (261)
T ss_pred CcccccccHHHH-hh-cCCCCcH-HHHHHH-----HhhCCCcceEEEeccCCCcchHHHHHhhh-hheeecCCHH-HHHH
Confidence 556666666666 21 2233442 223222 11113334899999999944445555432 4567777764 4444
Q ss_pred HHHhc---------------------CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCc-EEEEEEc
Q 023158 81 VIRHF---------------------DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGG-KFIAKIF 138 (286)
Q Consensus 81 i~~~l---------------------~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG-~fV~Kif 138 (286)
+.++. +.+++|||+|- +.+|..| +....+++.++||+.| ++.+=.+
T Consensus 71 a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A-----qa~HWFd-------le~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010|consen 71 AKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAA-----QAVHWFD-------LERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred hhcCCCcccccCCccccccccccccCCCcceeeehhh-----hhHHhhc-------hHHHHHHHHHHcCCCCCEEEEEEc
Confidence 43332 13568888873 3456666 3677899999999866 6655544
Q ss_pred cC--CChHHHHHHHHhc
Q 023158 139 RG--KDTSLLYCQLKLF 153 (286)
Q Consensus 139 ~g--~~~~~l~~~l~~~ 153 (286)
+. ....++-..+.++
T Consensus 139 ~dd~v~~pE~dsv~~r~ 155 (261)
T KOG3010|consen 139 NDDFVDWPEFDSVMLRL 155 (261)
T ss_pred cCCCcCCHHHHHHHHHH
Confidence 42 2344555555443
No 134
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.37 E-value=0.00078 Score=60.45 Aligned_cols=98 Identities=10% Similarity=0.031 Sum_probs=62.4
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHh---------------cCCCCccEEEeCCCC-C--C
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRH---------------FDGCKADLVVCDGAP-D--V 101 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~---------------l~~~~~DlVlsDgap-~--~ 101 (286)
.++.+|||+|||.|-.+..++. .|..++..|+...... .+... ..+..++++++|... + .
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~-~G~~V~gvD~S~~Ai~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAE-QGHRVLGVELSEIAVE-QFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHh-CCCeEEEEeCCHHHHH-HHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 5678999999999999998886 5888999999876443 22111 012357778888732 1 1
Q ss_pred CCCCc--ccHHHH----HHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 102 TGLHD--MDEFVQ----SQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 102 tG~~~--~D~~~~----~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
.+.-+ +|.... -.+-...+..+.++|||||++++-.|.
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 12111 222111 122345678889999999987766553
No 135
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=97.37 E-value=8e-05 Score=66.80 Aligned_cols=76 Identities=21% Similarity=0.327 Sum_probs=44.8
Q ss_pred cCCCCEEEEEcccccccccccCCC-----------------------------CCcEEEEeeCCChhhHHHHHHhcCCCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPI-----------------------------EGVIQVQGDITNARTAEVVIRHFDGCK 89 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~-----------------------------~gv~~i~gDIt~~~~~~~i~~~l~~~~ 89 (286)
+++|++|||+|||+|-.+.-++.+ .+|.++.+|...... ...+
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~--------~~ap 141 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP--------EEAP 141 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG--------GG-S
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc--------cCCC
Confidence 789999999999999988744332 234444444332210 1247
Q ss_pred ccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 90 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 90 ~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
||.|++.++.. .+ -....+.|++||.+|+=+-.
T Consensus 142 fD~I~v~~a~~-----~i------------p~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 142 FDRIIVTAAVP-----EI------------PEALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp EEEEEESSBBS-----S--------------HHHHHTEEEEEEEEEEESS
T ss_pred cCEEEEeeccc-----hH------------HHHHHHhcCCCcEEEEEEcc
Confidence 88888887532 11 12345789999999986554
No 136
>PRK06202 hypothetical protein; Provisional
Probab=97.31 E-value=0.00089 Score=60.00 Aligned_cols=90 Identities=13% Similarity=0.121 Sum_probs=55.3
Q ss_pred CCCCEEEEEcccccccccccCC-----CCCcEEEEeeCCChhhHHHHHHh-----------------cCCCCccEEEeCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAP-----IEGVIQVQGDITNARTAEVVIRH-----------------FDGCKADLVVCDG 97 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map-----~~gv~~i~gDIt~~~~~~~i~~~-----------------l~~~~~DlVlsDg 97 (286)
.++.+|||||||+|.++..++. -+++.++..|+..... +...+. +..+++|+|+|..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l-~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAV-AFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 4677999999999998876542 2346788888877543 221111 1235788888875
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccC
Q 023158 98 APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 140 (286)
Q Consensus 98 ap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g 140 (286)
. +|.+... ....++..+.++++ |+.++..+.++
T Consensus 138 ~-----lhh~~d~----~~~~~l~~~~r~~~-~~~~i~dl~~~ 170 (232)
T PRK06202 138 F-----LHHLDDA----EVVRLLADSAALAR-RLVLHNDLIRS 170 (232)
T ss_pred e-----eecCChH----HHHHHHHHHHHhcC-eeEEEeccccC
Confidence 4 3333321 13567788888888 44444433344
No 137
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.30 E-value=0.00028 Score=67.34 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=26.6
Q ss_pred cCCCCEEEEEcccccccccccCCCCC--cEEEEeeCCCh
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIEG--VIQVQGDITNA 75 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~g--v~~i~gDIt~~ 75 (286)
++++.+|||+|||+|.++..++...+ ..++..|+...
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~ 116 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRK 116 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHH
Confidence 46789999999999999986654322 24556677654
No 138
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0017 Score=60.68 Aligned_cols=121 Identities=24% Similarity=0.294 Sum_probs=74.2
Q ss_pred EEEEEcccccccccccCC-CCCcEEEEeeCCChhhH---HHHHHh------------cC--CCCccEEEeCCCCCCCCC-
Q 023158 44 RVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTA---EVVIRH------------FD--GCKADLVVCDGAPDVTGL- 104 (286)
Q Consensus 44 ~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~---~~i~~~------------l~--~~~~DlVlsDgap~~tG~- 104 (286)
+|||||||+|..+..++. .+...++..||+..... +.+..+ |. .++||+|+|+- |.....
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNP-PYip~~~ 191 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNP-PYIPAED 191 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCC-CCCCCcc
Confidence 799999999999986543 34467788888764321 111111 11 13799999996 333221
Q ss_pred -Cc------ccHH-------HHHHHHHHHHHHHHhcccCCcEEEEEEc--cCCChHHHHHHHHhcCCeeEeeCCCCCC
Q 023158 105 -HD------MDEF-------VQSQLILAGLTVVTHVLKEGGKFIAKIF--RGKDTSLLYCQLKLFFPVVTFAKPKSSR 166 (286)
Q Consensus 105 -~~------~D~~-------~~~~L~~aaL~~a~~vLkpGG~fV~Kif--~g~~~~~l~~~l~~~F~~V~~~KP~sSR 166 (286)
+. .+.. ..+......+..+..+|+|||.+++.+- ++..+..++..... |..|...|....+
T Consensus 192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~-~~~v~~~~d~~g~ 268 (280)
T COG2890 192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGF-FEIVETLKDLFGR 268 (280)
T ss_pred cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCC-ceEEEEEecCCCc
Confidence 11 1110 2456778888899999999999998875 23334444433322 6777777765543
No 139
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=97.17 E-value=0.0013 Score=59.64 Aligned_cols=83 Identities=13% Similarity=0.075 Sum_probs=47.9
Q ss_pred CCCCEEEEEcccccccccccCC--CCCcEEEEeeCCChhh--------------------------HHHHHHhcCCCCcc
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAP--IEGVIQVQGDITNART--------------------------AEVVIRHFDGCKAD 91 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map--~~gv~~i~gDIt~~~~--------------------------~~~i~~~l~~~~~D 91 (286)
.+..+|||+|||.|.-+..|+. .++..++..|+..... +..+......++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 4678999999999974442211 1122444444443211 11111111135799
Q ss_pred EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 92 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 92 lVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
+|+.|+.. +.| ...+..+.++|+|||.+|+-
T Consensus 147 ~VfiDa~k--------~~y------~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 147 FAFVDADK--------PNY------VHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEEECCCH--------HHH------HHHHHHHHHhcCCCeEEEEE
Confidence 99999742 122 24567778999999998863
No 140
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=97.17 E-value=0.00096 Score=62.70 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=57.0
Q ss_pred CCCEEEEEcccccccccccC---------------------------C--CCCcEEEEeeCCChhhHHHHHHhcCCCCcc
Q 023158 41 GVKRVVDLCAAPGSWSQPMA---------------------------P--IEGVIQVQGDITNARTAEVVIRHFDGCKAD 91 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~ma---------------------------p--~~gv~~i~gDIt~~~~~~~i~~~l~~~~~D 91 (286)
.|.+||||.|-+|+||...+ . ...+.++++|+.+. .+++.+ +++||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~--l~~~~~---~~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF--LKRLKK---GGRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH--HHHHHH---TT-EE
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH--HHHHhc---CCCCC
Confidence 57899999999999998221 1 12356666666553 122221 35899
Q ss_pred EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCC-ChHHHHHHHH
Q 023158 92 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK-DTSLLYCQLK 151 (286)
Q Consensus 92 lVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~-~~~~l~~~l~ 151 (286)
+|++|-..-..+-.+.. .-....+..+.++|+|||.+++..-... +...|.+.+.
T Consensus 198 ~IIlDPPsF~k~~~~~~-----~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~ 253 (286)
T PF10672_consen 198 LIILDPPSFAKSKFDLE-----RDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVA 253 (286)
T ss_dssp EEEE--SSEESSTCEHH-----HHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHH
T ss_pred EEEECCCCCCCCHHHHH-----HHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHH
Confidence 99999754333433221 2234556778899999999886554433 3444555443
No 141
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.09 E-value=0.002 Score=58.01 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=58.0
Q ss_pred CCCEEEEEcccccccccccCCC----------CCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHH
Q 023158 41 GVKRVVDLCAAPGSWSQPMAPI----------EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEF 110 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map~----------~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~ 110 (286)
+...|.|+|||-+-.++.+..- .+-.++.+||.+.+ |+.+.+|+|++-.+...|.
T Consensus 72 ~~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n~~Vtacdia~vP--------L~~~svDv~VfcLSLMGTn------- 136 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPNPRVTACDIANVP--------LEDESVDVAVFCLSLMGTN------- 136 (219)
T ss_dssp TTS-EEEES-TT-HHHHH--S---EEEEESS-SSTTEEES-TTS-S----------TT-EEEEEEES---SS--------
T ss_pred CCEEEEECCCchHHHHHhcccCceEEEeeccCCCCCEEEecCccCc--------CCCCceeEEEEEhhhhCCC-------
Confidence 4579999999999988743210 12346789998865 4567899998876654432
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEEcc--CCChHHHHHHHHhc-CCeeE
Q 023158 111 VQSQLILAGLTVVTHVLKEGGKFIAKIFR--GKDTSLLYCQLKLF-FPVVT 158 (286)
Q Consensus 111 ~~~~L~~aaL~~a~~vLkpGG~fV~Kif~--g~~~~~l~~~l~~~-F~~V~ 158 (286)
...-+.+|.|+|||||.+.+---. =.+...+...++.+ |+.+.
T Consensus 137 -----~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~ 182 (219)
T PF05148_consen 137 -----WPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKS 182 (219)
T ss_dssp -----HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEE
T ss_pred -----cHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEe
Confidence 134578999999999998765443 33677777777764 55443
No 142
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.06 E-value=0.0011 Score=57.93 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=36.5
Q ss_pred CcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHH-----------HHH---hcCCCCccEEEeCCC
Q 023158 38 IFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEV-----------VIR---HFDGCKADLVVCDGA 98 (286)
Q Consensus 38 l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~-----------i~~---~l~~~~~DlVlsDga 98 (286)
.+.++.+|||+|||+|.++..++...++..+..|+........ +.. .+..++||+|+|..+
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 3568889999999999998866433344444445543221100 000 123457899998764
No 143
>PHA03412 putative methyltransferase; Provisional
Probab=97.04 E-value=0.00094 Score=61.25 Aligned_cols=96 Identities=16% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCEEEEEcccccccccccCC----CCCcEEEEeeCCChhhHHHHHHhc--------------CCCCccEEEeCCCCCCCC
Q 023158 42 VKRVVDLCAAPGSWSQPMAP----IEGVIQVQGDITNARTAEVVIRHF--------------DGCKADLVVCDGAPDVTG 103 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map----~~gv~~i~gDIt~~~~~~~i~~~l--------------~~~~~DlVlsDgap~~tG 103 (286)
+.+|||+|||+|.++..++. .+...+...||...... ...+.+ ...+||+|+|+-.-....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~-~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYK-LGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIK 128 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHH-HHHhhccCCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence 67999999999999873321 11234444455443211 111000 124799999997432111
Q ss_pred CCccc-HHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 104 LHDMD-EFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 104 ~~~~D-~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
..+.. .+....+....+..|.+++++|+.++=|..
T Consensus 129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~ 164 (241)
T PHA03412 129 TSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMS 164 (241)
T ss_pred ccccCCcccccHHHHHHHHHHHHHcCCCEEEeCccc
Confidence 11110 011234456667777786666664333433
No 144
>PHA03411 putative methyltransferase; Provisional
Probab=97.03 E-value=0.0013 Score=61.45 Aligned_cols=95 Identities=18% Similarity=0.114 Sum_probs=54.1
Q ss_pred CCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHHHHh--------------cCCCCccEEEeCCCCCCCCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVVIRH--------------FDGCKADLVVCDGAPDVTGLH 105 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i~~~--------------l~~~~~DlVlsDgap~~tG~~ 105 (286)
.+.+|||+|||+|.++..+.. .++..++..|+.... ++...+. ....+||+|+++-+.......
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~a-l~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~ 142 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEF-ARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTT 142 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHH-HHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCch
Confidence 456999999999999875532 224566666776532 2222211 123579999999754322211
Q ss_pred cccHHHHH-------H-H-HHHHHHHHHhcccCCcEEEEE
Q 023158 106 DMDEFVQS-------Q-L-ILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 106 ~~D~~~~~-------~-L-~~aaL~~a~~vLkpGG~fV~K 136 (286)
+....... + | +..-+.-...+|+|+|.+.+-
T Consensus 143 d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 143 DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 11111001 0 1 245556667799999977654
No 145
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.99 E-value=0.0038 Score=58.04 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=64.6
Q ss_pred CCCEEEEEcccccccccc---------cCCCCCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHH
Q 023158 41 GVKRVVDLCAAPGSWSQP---------MAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFV 111 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~---------map~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~ 111 (286)
....|-|+|||-+-.++. +.+ .+-.++.+||++.. ++++.+|++++=.+...|.+
T Consensus 180 ~~~vIaD~GCGEakiA~~~~~kV~SfDL~a-~~~~V~~cDm~~vP--------l~d~svDvaV~CLSLMgtn~------- 243 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIASSERHKVHSFDLVA-VNERVIACDMRNVP--------LEDESVDVAVFCLSLMGTNL------- 243 (325)
T ss_pred CceEEEecccchhhhhhccccceeeeeeec-CCCceeeccccCCc--------CccCcccEEEeeHhhhcccH-------
Confidence 456899999999988861 121 35567889999964 46689999987665544432
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEEccC--CChHHHHHHHHhc-CCee
Q 023158 112 QSQLILAGLTVVTHVLKEGGKFIAKIFRG--KDTSLLYCQLKLF-FPVV 157 (286)
Q Consensus 112 ~~~L~~aaL~~a~~vLkpGG~fV~Kif~g--~~~~~l~~~l~~~-F~~V 157 (286)
..-+.+|.|+|++||.+-+--.++ .+...|...|..+ |...
T Consensus 244 -----~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 244 -----ADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK 287 (325)
T ss_pred -----HHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeee
Confidence 345688999999999986554433 2455555555443 5443
No 146
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.99 E-value=0.0016 Score=55.60 Aligned_cols=34 Identities=9% Similarity=0.109 Sum_probs=24.7
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITN 74 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~ 74 (286)
.++.+|||+|||+|..+..++.. +..++..|+..
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~ 45 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER-AARVTAIEIDP 45 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCH
Confidence 46789999999999999966543 34455555554
No 147
>PRK01581 speE spermidine synthase; Validated
Probab=96.98 E-value=0.0065 Score=59.06 Aligned_cols=113 Identities=17% Similarity=0.081 Sum_probs=63.4
Q ss_pred CCCCEEEEEcccccccccccCCCCC-cEEEEeeCCChhhHHHHHH--------------------------hc--CCCCc
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEG-VIQVQGDITNARTAEVVIR--------------------------HF--DGCKA 90 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~g-v~~i~gDIt~~~~~~~i~~--------------------------~l--~~~~~ 90 (286)
....+||+||||.|+....+...++ ..+...||... +++...+ .+ ..++|
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpe-VIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGS-MINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHH-HHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3457999999999997764443332 23444555432 2111110 00 13579
Q ss_pred cEEEeCCCCCCCCCCcccHHHHHHH-HHHHHHHHHhcccCCcEEEEEEccCCCh----HHHHHHHHhcCCeeEee
Q 023158 91 DLVVCDGAPDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGKDT----SLLYCQLKLFFPVVTFA 160 (286)
Q Consensus 91 DlVlsDgap~~tG~~~~D~~~~~~L-~~aaL~~a~~vLkpGG~fV~Kif~g~~~----~~l~~~l~~~F~~V~~~ 160 (286)
|+|++|. ++..+... ..| ....+..+.+.|+|||.||+-.-..... ..+...++..|-.|..+
T Consensus 228 DVIIvDl-~DP~~~~~------~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y 295 (374)
T PRK01581 228 DVIIIDF-PDPATELL------STLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSY 295 (374)
T ss_pred cEEEEcC-CCccccch------hhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEE
Confidence 9999996 33222111 111 2456678889999999999863222222 33455666666666544
No 148
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=96.96 E-value=0.00056 Score=63.00 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=60.4
Q ss_pred cCCCCEEEEEcccccccccccC----C-------------------------C-CCcEEEEeeCCChhhHHHHHHhcCCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMA----P-------------------------I-EGVIQVQGDITNARTAEVVIRHFDGC 88 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~ma----p-------------------------~-~gv~~i~gDIt~~~~~~~i~~~l~~~ 88 (286)
++||.+||+-|.|.|++|..++ | + ..|++...|+.+..-. +.+ ..
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~----~~~-~~ 112 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD----EEL-ES 112 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S----TT--TT
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc----ccc-cC
Confidence 4799999999999999998322 1 2 2466677777653210 011 24
Q ss_pred CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcc-cCCcEEEEEEccCCChHHHHHHHHh-cCCeeEe
Q 023158 89 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVL-KEGGKFIAKIFRGKDTSLLYCQLKL-FFPVVTF 159 (286)
Q Consensus 89 ~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vL-kpGG~fV~Kif~g~~~~~l~~~l~~-~F~~V~~ 159 (286)
.+|.|+.|+.-- ..++.-+.++| ++||.+++=.=.-+.+..+...|+. -|..+..
T Consensus 113 ~~DavfLDlp~P----------------w~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 113 DFDAVFLDLPDP----------------WEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIET 169 (247)
T ss_dssp SEEEEEEESSSG----------------GGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEE
T ss_pred cccEEEEeCCCH----------------HHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEE
Confidence 689999998421 24667788999 8999988754444455566666666 3765544
No 149
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.92 E-value=0.0049 Score=55.69 Aligned_cols=108 Identities=16% Similarity=0.127 Sum_probs=56.4
Q ss_pred CEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhc---CCCCcc-EEEeCCC--CCCCCCCcccHH------
Q 023158 43 KRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHF---DGCKAD-LVVCDGA--PDVTGLHDMDEF------ 110 (286)
Q Consensus 43 ~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l---~~~~~D-lVlsDga--p~~tG~~~~D~~------ 110 (286)
..||.+|||||.--+...-.|++++...|-.... .+-..+.+ ....+- +|+++|. |+. ....+|..
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~m-ee~~~ks~~E~k~~~~~~fvva~ge~l~~l-~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKM-EEIADKSAAEKKPLQVERFVVADGENLPQL-ADGSYDTVVCTLVL 155 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHH-HHHHHHHHhhccCcceEEEEeechhcCccc-ccCCeeeEEEEEEE
Confidence 3689999999987775444456666666655432 11111111 111233 5555553 100 00001110
Q ss_pred HHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHh
Q 023158 111 VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 152 (286)
Q Consensus 111 ~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~ 152 (286)
.+.+-...+|+...++|||||.+++--.-......+...++.
T Consensus 156 CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~ 197 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQ 197 (252)
T ss_pred eccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHH
Confidence 122334788999999999999998654433333333333333
No 150
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.85 E-value=0.0037 Score=53.21 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=46.0
Q ss_pred CCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 63 EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 63 ~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
.++.++++|+.+.. +..+.||+|++.. +++++.. ...++..+.++|||||.|++-.|..++
T Consensus 26 ~~i~~~~~d~~~lp--------~~~~~fD~v~~~~-----~l~~~~d------~~~~l~ei~rvLkpGG~l~i~d~~~~~ 86 (160)
T PLN02232 26 KCIEWIEGDAIDLP--------FDDCEFDAVTMGY-----GLRNVVD------RLRAMKEMYRVLKPGSRVSILDFNKSN 86 (160)
T ss_pred CceEEEEechhhCC--------CCCCCeeEEEecc-----hhhcCCC------HHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 35889999998753 3456899999854 3444332 257889999999999999988887554
No 151
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.81 E-value=0.0036 Score=57.37 Aligned_cols=108 Identities=20% Similarity=0.259 Sum_probs=67.8
Q ss_pred CCEEEEEcccccccccccCC----CCCcEEEEeeCCChhhHHH-------------H---HHhcCCCCccEEEeCCCCCC
Q 023158 42 VKRVVDLCAAPGSWSQPMAP----IEGVIQVQGDITNARTAEV-------------V---IRHFDGCKADLVVCDGAPDV 101 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map----~~gv~~i~gDIt~~~~~~~-------------i---~~~l~~~~~DlVlsDgap~~ 101 (286)
-.++||||||+|=.-.++.+ +.|| ||+..+..+. + .+....+++|||++-
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGv-----DiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~Aa----- 195 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGV-----DISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAA----- 195 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCC-----chhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhh-----
Confidence 36999999999977765433 4454 7766543211 1 111245789998862
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhcCCeeEeeCCCCCCCCchhhhhhhcC
Q 023158 102 TGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCEN 178 (286)
Q Consensus 102 tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~yvVc~g 178 (286)
|-..-+--+...+..+..+|+|||.|.+.+=+..+.. . .+..| +-|..-+|.||....
T Consensus 196 ------DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~-----------~-f~l~p-s~RyAH~~~YVr~~l 253 (287)
T COG4976 196 ------DVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG-----------G-FVLGP-SQRYAHSESYVRALL 253 (287)
T ss_pred ------hHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC-----------C-eecch-hhhhccchHHHHHHH
Confidence 1111122246677888999999999998876665542 1 12344 567888889977654
No 152
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.77 E-value=0.0039 Score=57.28 Aligned_cols=103 Identities=15% Similarity=0.218 Sum_probs=58.9
Q ss_pred EEEEEccccccccccc---CCCCCcEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCCCCC----CCCCcccH-----
Q 023158 44 RVVDLCAAPGSWSQPM---APIEGVIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGAPDV----TGLHDMDE----- 109 (286)
Q Consensus 44 ~VLDLgaaPGswSq~m---ap~~gv~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDgap~~----tG~~~~D~----- 109 (286)
++|.+|||-|.-.-++ .|-++..+..+|...- .++.+.++-. ..++..-++|.+-+. -....+|-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~-Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR-AIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChH-HHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 8999999999988765 2334578888888753 3333322210 112222223321000 00000110
Q ss_pred ---HHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHH
Q 023158 110 ---FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLY 147 (286)
Q Consensus 110 ---~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~ 147 (286)
++.-+-...++....++|||||.+++.-|...+...+.
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlR 193 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLR 193 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHh
Confidence 01112235678888999999999999999888877554
No 153
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.75 E-value=0.017 Score=52.73 Aligned_cols=129 Identities=19% Similarity=0.264 Sum_probs=75.1
Q ss_pred CCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCC------------------CCCCC
Q 023158 42 VKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA------------------PDVTG 103 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDga------------------p~~tG 103 (286)
..-|||+|||+|=-.+.+. -+|-.++-.||+-.+....+.+.++ -|++++||. .+|--
T Consensus 51 ~~~iLDIGCGsGLSg~vL~-~~Gh~wiGvDiSpsML~~a~~~e~e---gdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLS-DSGHQWIGVDISPSMLEQAVERELE---GDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CcEEEEeccCCCcchheec-cCCceEEeecCCHHHHHHHHHhhhh---cCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 5689999999996655554 3688889999997654333333332 567777763 22111
Q ss_pred CCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCC--hHHHHHH-HHhcC-CeeEeeCCCCCCCCchhhhhhh
Q 023158 104 LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD--TSLLYCQ-LKLFF-PVVTFAKPKSSRNSSIEAFAVC 176 (286)
Q Consensus 104 ~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~--~~~l~~~-l~~~F-~~V~~~KP~sSR~~S~E~yvVc 176 (286)
+.+..-..-..-+..-+...+.+|++|+..|+..+-..+ .+.|..+ ++.-| ..+.+--|.+.|+ .-.|+|-
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~GGlvVd~Pes~k~--kK~yLVL 201 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGGGLVVDWPESTKN--KKYYLVL 201 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCCceeeeccccccc--ceeEEEE
Confidence 111000011122344456677899999999998886543 3344433 44445 4455557887766 3345443
No 154
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=96.74 E-value=0.0087 Score=53.01 Aligned_cols=35 Identities=31% Similarity=0.280 Sum_probs=28.7
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCCh
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNA 75 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~ 75 (286)
.++.+|||+|||+|.++..++.. +..++..|+...
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~ 88 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQ 88 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHH
Confidence 46789999999999999987754 567788898764
No 155
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.73 E-value=0.0022 Score=59.80 Aligned_cols=36 Identities=33% Similarity=0.482 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHc-------CCcCCCCEEEEEccccccccc
Q 023158 22 RARSAFKLLQIDEEF-------NIFEGVKRVVDLCAAPGSWSQ 57 (286)
Q Consensus 22 raRsa~KL~eId~~f-------~l~~~g~~VLDLgaaPGswSq 57 (286)
-|||..||.|.--.| .-+.+|+..+||||+||||+-
T Consensus 185 PSRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTy 227 (358)
T COG2933 185 PSRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTY 227 (358)
T ss_pred CchhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccch
Confidence 689999997754444 235789999999999999996
No 156
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=96.64 E-value=0.0057 Score=54.48 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=49.4
Q ss_pred CCCCEEEEEcccccccccc-cCC--------------------------CCCcEEEEeeCCChhhHHHHHHhcCCCCccE
Q 023158 40 EGVKRVVDLCAAPGSWSQP-MAP--------------------------IEGVIQVQGDITNARTAEVVIRHFDGCKADL 92 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~-map--------------------------~~gv~~i~gDIt~~~~~~~i~~~l~~~~~Dl 92 (286)
..+.+|||||||.|.++.. ++. +.++.++++|+.+. + ... ...+|+
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~-----l-~~~-~~~fDl 124 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF-----L-AQP-GTPHNV 124 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH-----H-hhc-CCCceE
Confidence 3577999999999999872 221 12344555554321 1 111 246999
Q ss_pred EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 93 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 93 VlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
|++|-. .-.|.. ..+...|.. ..+|+|+|.+++......+
T Consensus 125 V~~DPP-y~~g~~--------~~~l~~l~~-~~~l~~~~iv~ve~~~~~~ 164 (199)
T PRK10909 125 VFVDPP-FRKGLL--------EETINLLED-NGWLADEALIYVESEVENG 164 (199)
T ss_pred EEECCC-CCCChH--------HHHHHHHHH-CCCcCCCcEEEEEecCCCC
Confidence 999964 333321 111222222 3468999999988665433
No 157
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.64 E-value=0.0084 Score=53.97 Aligned_cols=95 Identities=11% Similarity=0.034 Sum_probs=58.8
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHh-c-------------CCCCccEEEeCCCCC-CCCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRH-F-------------DGCKADLVVCDGAPD-VTGL 104 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~-l-------------~~~~~DlVlsDgap~-~tG~ 104 (286)
.++.+|||+|||.|--+..++. .|..++..|+..........+. + ....+++..+|...- ....
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~-~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAE-QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHh-CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 4677999999999998888875 5889999999876443222111 1 123466777776421 1111
Q ss_pred Cc----ccHHHH----HHHHHHHHHHHHhcccCCcEEEE
Q 023158 105 HD----MDEFVQ----SQLILAGLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 105 ~~----~D~~~~----~~L~~aaL~~a~~vLkpGG~fV~ 135 (286)
.. +|.... .++-...+..+.++|+|||+.++
T Consensus 115 ~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 115 ADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 11 222211 12335567888999999997554
No 158
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.63 E-value=0.0028 Score=57.59 Aligned_cols=81 Identities=26% Similarity=0.303 Sum_probs=51.5
Q ss_pred cCCCCEEEEEccccccccccc---------------CC------------CCCcEEEEeeCCChhhHHHHHHhcCCCCcc
Q 023158 39 FEGVKRVVDLCAAPGSWSQPM---------------AP------------IEGVIQVQGDITNARTAEVVIRHFDGCKAD 91 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~m---------------ap------------~~gv~~i~gDIt~~~~~~~i~~~l~~~~~D 91 (286)
+++|.+||-||||+|..-..+ +| .+|+.-|-+|.+.+..- .++- +.+|
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y----~~lv-~~VD 145 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKY----RMLV-EMVD 145 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGG----TTTS---EE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHh----hccc-cccc
Confidence 689999999999999866522 11 25666777888877532 1222 4799
Q ss_pred EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEE
Q 023158 92 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 92 lVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 137 (286)
+|.+|.|- .| | .+.++..+...||+||.|++.+
T Consensus 146 vI~~DVaQ-------p~---Q---a~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 146 VIFQDVAQ-------PD---Q---ARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEE-SS-------TT---H---HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEecCCC-------hH---H---HHHHHHHHHhhccCCcEEEEEE
Confidence 99999862 11 1 2445667788999999998655
No 159
>PLN02476 O-methyltransferase
Probab=96.62 E-value=0.0085 Score=56.17 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=49.5
Q ss_pred CCCCEEEEEcccccccccccCC-C-CCcEEEEeeCCChh--------------------------hHHHHHHhcCCCCcc
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAP-I-EGVIQVQGDITNAR--------------------------TAEVVIRHFDGCKAD 91 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map-~-~gv~~i~gDIt~~~--------------------------~~~~i~~~l~~~~~D 91 (286)
.+..+||++|++.|.-+..|+. + ++..++..|+.... .+.++...-..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 4678999999999998774432 1 12233344443321 111111110124799
Q ss_pred EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 92 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 92 lVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
+|+-|+.. ..| ...+..+.++|+|||.+|+-
T Consensus 197 ~VFIDa~K--------~~Y------~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDADK--------RMY------QDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECCCH--------HHH------HHHHHHHHHhcCCCcEEEEe
Confidence 99999752 122 44567778999999999974
No 160
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.61 E-value=0.0076 Score=53.24 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=27.3
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCCh
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNA 75 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~ 75 (286)
.++.+|||+|||+|.++..++.. +..+...|+...
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~ 96 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQ 96 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHH
Confidence 46789999999999999877653 556777788654
No 161
>PLN02672 methionine S-methyltransferase
Probab=96.61 E-value=0.0075 Score=65.77 Aligned_cols=50 Identities=20% Similarity=0.182 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhcccCCcEEEEEEcc--CCChH-HHHHHHHhcCCeeEeeCCC
Q 023158 112 QSQLILAGLTVVTHVLKEGGKFIAKIFR--GKDTS-LLYCQLKLFFPVVTFAKPK 163 (286)
Q Consensus 112 ~~~L~~aaL~~a~~vLkpGG~fV~Kif~--g~~~~-~l~~~l~~~F~~V~~~KP~ 163 (286)
.+.+.+..+..+.++|+|||.+++.+-. +..+. .++.. .-|..+.+++-+
T Consensus 253 GL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~--~gf~~~~~~~~~ 305 (1082)
T PLN02672 253 GLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFER--RGFRITKLWQTK 305 (1082)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHH--CCCCeeEEeeeh
Confidence 4567788899999999999999988753 22233 23332 348877777655
No 162
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0013 Score=59.08 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=46.7
Q ss_pred cCCCCEEEEEcccccccccccCCCC--------------------------CcEEEEeeCCChhhHHHHHHhcCCCCccE
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIE--------------------------GVIQVQGDITNARTAEVVIRHFDGCKADL 92 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~--------------------------gv~~i~gDIt~~~~~~~i~~~l~~~~~Dl 92 (286)
++++++||++|||.|--+.-|+.+- +|++++||-+.-.. +..+||.
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~--------~~aPyD~ 141 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP--------EEAPYDR 141 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC--------CCCCcCE
Confidence 4789999999999999887444433 34444444444211 1245666
Q ss_pred EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 93 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 93 VlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
|+..++.+. + -..-..-|++||.+|+=+-
T Consensus 142 I~Vtaaa~~-----v------------P~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 142 IIVTAAAPE-----V------------PEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred EEEeeccCC-----C------------CHHHHHhcccCCEEEEEEc
Confidence 665554321 1 1234578999999998665
No 163
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=96.52 E-value=0.014 Score=55.65 Aligned_cols=35 Identities=31% Similarity=0.339 Sum_probs=29.7
Q ss_pred CCCEEEEEcccccccccccCCCCCcEEEEeeCCChh
Q 023158 41 GVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNAR 76 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~ 76 (286)
++.+|||||||+|.++..++.. |..++..|+...+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~m 178 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAM 178 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHH
Confidence 5789999999999999988764 7788889998764
No 164
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.46 E-value=0.019 Score=56.83 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=18.3
Q ss_pred cCCCCEEEEEcccccccccccC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMA 60 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~ma 60 (286)
+.++.+|||||||+|.++..++
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la 316 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLA 316 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHH
Confidence 3578899999999999988443
No 165
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=96.42 E-value=0.015 Score=56.07 Aligned_cols=127 Identities=16% Similarity=0.106 Sum_probs=78.2
Q ss_pred cCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHH---------------------hcCCCCccEEEeCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIR---------------------HFDGCKADLVVCDG 97 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~---------------------~l~~~~~DlVlsDg 97 (286)
.++|..|||==|||||+..+.. +-|+..+..||...+.. .... .|.+..+|-|++|.
T Consensus 195 v~~G~~vlDPFcGTGgiLiEag-l~G~~viG~Did~~mv~-gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAG-LMGARVIGSDIDERMVR-GAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhh-hcCceEeecchHHHHHh-hhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 5789999999999999988543 23455555555443221 1111 13334599999997
Q ss_pred CCCCCCCCc-ccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhcCCeeEeeCCCCCCCCchhhhh
Q 023158 98 APDVTGLHD-MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFA 174 (286)
Q Consensus 98 ap~~tG~~~-~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~yv 174 (286)
.= |... .--....+|...+|+.+..+|++||.+|+-..... .-+.....|+-+..+.-...+.-+...|+
T Consensus 273 PY---Grst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~----~~~~~~~~f~v~~~~~~~~H~sLtR~i~v 343 (347)
T COG1041 273 PY---GRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDP----RHELEELGFKVLGRFTMRVHGSLTRVIYV 343 (347)
T ss_pred CC---CcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc----hhhHhhcCceEEEEEEEeecCceEEEEEE
Confidence 31 1111 00011457889999999999999999998777322 22333446777766655555555555553
No 166
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=96.30 E-value=0.016 Score=52.17 Aligned_cols=86 Identities=29% Similarity=0.443 Sum_probs=54.0
Q ss_pred HHHHHcCCcCCCCEEEEEcccccccccccC-C--------------------CCCcEEEEeeCCChhhHHHHHHhcCCCC
Q 023158 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQPMA-P--------------------IEGVIQVQGDITNARTAEVVIRHFDGCK 89 (286)
Q Consensus 31 eId~~f~l~~~g~~VLDLgaaPGswSq~ma-p--------------------~~gv~~i~gDIt~~~~~~~i~~~l~~~~ 89 (286)
.+.+.+. +.+..+|||||+|.|.|+..+. . ..++.++.||+.++ ++ .
T Consensus 91 ~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~---------~P-~- 158 (241)
T PF00891_consen 91 ILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDP---------LP-V- 158 (241)
T ss_dssp HHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTC---------CS-S-
T ss_pred hhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhh---------hc-c-
Confidence 3344444 5677899999999999998321 1 23566777777732 33 3
Q ss_pred ccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCC--cEEEEEE
Q 023158 90 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEG--GKFIAKI 137 (286)
Q Consensus 90 ~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpG--G~fV~Ki 137 (286)
+|+|+.-. + +|+... +-+...|..+.+.|+|| |.+++--
T Consensus 159 ~D~~~l~~---v--Lh~~~d----~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 159 ADVYLLRH---V--LHDWSD----EDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp ESEEEEES---S--GGGS-H----HHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred ccceeeeh---h--hhhcch----HHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 88887632 2 233332 33567788889999999 9987643
No 167
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.29 E-value=0.0017 Score=64.62 Aligned_cols=92 Identities=24% Similarity=0.294 Sum_probs=52.3
Q ss_pred CCCEEEEEcccccccccc------------------cCC--------------C-CCcEEEEeeCCChhhHHHHHHhcCC
Q 023158 41 GVKRVVDLCAAPGSWSQP------------------MAP--------------I-EGVIQVQGDITNARTAEVVIRHFDG 87 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~------------------map--------------~-~gv~~i~gDIt~~~~~~~i~~~l~~ 87 (286)
.+..|+|+|||+|-.+.. ..| + ..|+++++|+++... .
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l---------p 256 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL---------P 256 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH---------S
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC---------C
Confidence 357899999999998750 011 1 237777888877642 2
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEE---EEEc-cCCChHHHHHHH
Q 023158 88 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI---AKIF-RGKDTSLLYCQL 150 (286)
Q Consensus 88 ~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV---~Kif-~g~~~~~l~~~l 150 (286)
.++|+|||-.- ...|... |.-..|..+.+.|||||.++ ..+| ..-....++..+
T Consensus 257 ekvDIIVSElL-Gsfg~nE--------l~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~~~~ 314 (448)
T PF05185_consen 257 EKVDIIVSELL-GSFGDNE--------LSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLYQEV 314 (448)
T ss_dssp S-EEEEEE----BTTBTTT--------SHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHHHHH
T ss_pred CceeEEEEecc-CCccccc--------cCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHHHHH
Confidence 58999999742 1233322 22345677789999999998 4444 222344455444
No 168
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=96.27 E-value=0.034 Score=52.26 Aligned_cols=125 Identities=18% Similarity=0.149 Sum_probs=73.8
Q ss_pred CCEEEEEcccccccccccC-CCCCcEEEEeeCCChhhH---HHHHH---------------------h-cCCCCccEEEe
Q 023158 42 VKRVVDLCAAPGSWSQPMA-PIEGVIQVQGDITNARTA---EVVIR---------------------H-FDGCKADLVVC 95 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~ma-p~~gv~~i~gDIt~~~~~---~~i~~---------------------~-l~~~~~DlVls 95 (286)
+..++|+|||.|..|..|. .++.++++..|.+...+. +...+ + +..++.|+++|
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllvs 228 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLVS 228 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEec
Confidence 4589999999999999664 466788889998876432 11100 0 12368999999
Q ss_pred CCCCCCCCC--CcccHH--------------HHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHH-----HHHHhcC
Q 023158 96 DGAPDVTGL--HDMDEF--------------VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLY-----CQLKLFF 154 (286)
Q Consensus 96 Dgap~~tG~--~~~D~~--------------~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~-----~~l~~~F 154 (286)
+- |.+.-. ...+.. .....+...+..|.+.|+|||.+.+.+-.-+.-..+. .....+|
T Consensus 229 NP-PYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~ 307 (328)
T KOG2904|consen 229 NP-PYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSN 307 (328)
T ss_pred CC-CcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccCcHHHHHHHHhchhhcc
Confidence 85 322110 001000 1223345567789999999999998876333322222 2223345
Q ss_pred CeeEeeCCCCCCC
Q 023158 155 PVVTFAKPKSSRN 167 (286)
Q Consensus 155 ~~V~~~KP~sSR~ 167 (286)
..+.++..-+.|+
T Consensus 308 ~~~~v~~Df~~~~ 320 (328)
T KOG2904|consen 308 GKAAVVSDFAGRP 320 (328)
T ss_pred chhheeecccCCc
Confidence 6666655444443
No 169
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=96.21 E-value=0.0081 Score=57.68 Aligned_cols=119 Identities=18% Similarity=0.179 Sum_probs=66.8
Q ss_pred CCCCEEEEEcccccccccccCCC--------------------------CC-cEEEEeeCCChhhHHHHHHhcCCCCccE
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPI--------------------------EG-VIQVQGDITNARTAEVVIRHFDGCKADL 92 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~--------------------------~g-v~~i~gDIt~~~~~~~i~~~l~~~~~Dl 92 (286)
-.+..|||+|||+|-.|+..+.- .+ +++++|.+.+.. ++-+++|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~--------LP~eKVDi 130 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIE--------LPVEKVDI 130 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEe--------cCccceeE
Confidence 46789999999999999832221 11 344455444431 22368999
Q ss_pred EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEE---EEEcc-CCChHHHHHHHHhcCCeeEeeCCCCCCCC
Q 023158 93 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI---AKIFR-GKDTSLLYCQLKLFFPVVTFAKPKSSRNS 168 (286)
Q Consensus 93 VlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV---~Kif~-g~~~~~l~~~l~~~F~~V~~~KP~sSR~~ 168 (286)
|+|.-. |.. ..--.++.++|-.--+.|+|||.+. +.+|- +-........--.+|..|.-++-...+..
T Consensus 131 IvSEWM----Gy~----Ll~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d~~~~~~~i~fW~~Vygfdms~~~~~ 202 (346)
T KOG1499|consen 131 IVSEWM----GYF----LLYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIEDDSYKDDKIGFWDDVYGFDMSCIKKI 202 (346)
T ss_pred Eeehhh----hHH----HHHhhhhhhhhhhhhhccCCCceEccccceEEEEeccCchhhhhhcCccccccccchhhhhhh
Confidence 998621 211 1123456667777778999999875 33331 11112222222225677777666666554
Q ss_pred chhhhh
Q 023158 169 SIEAFA 174 (286)
Q Consensus 169 S~E~yv 174 (286)
..+..+
T Consensus 203 ~~~e~l 208 (346)
T KOG1499|consen 203 AIKEPL 208 (346)
T ss_pred hhcccc
Confidence 444333
No 170
>PRK00536 speE spermidine synthase; Provisional
Probab=96.11 E-value=0.033 Score=51.82 Aligned_cols=104 Identities=18% Similarity=0.201 Sum_probs=69.8
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhc---------------------CCCCccEEEeCCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHF---------------------DGCKADLVVCDGA 98 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l---------------------~~~~~DlVlsDga 98 (286)
....+||=+|.|-|+-..++...+. .+..+||-.. .++..++++ ..++||+|+.|..
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~-Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~ 148 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEK-ILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQE 148 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHH-HHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCC
Confidence 3458999999999999987766654 5666666543 322222211 1257999999975
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEE----ccCCChHHHHHHHHhcCCeeEeeC
Q 023158 99 PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI----FRGKDTSLLYCQLKLFFPVVTFAK 161 (286)
Q Consensus 99 p~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki----f~g~~~~~l~~~l~~~F~~V~~~K 161 (286)
++ ..-...+.+.|+|||.||+.. |.......++..++..|..|..+-
T Consensus 149 ~~----------------~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y~ 199 (262)
T PRK00536 149 PD----------------IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPFV 199 (262)
T ss_pred CC----------------hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEEE
Confidence 42 122356789999999999743 333345677788888998776653
No 171
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.05 E-value=0.019 Score=50.88 Aligned_cols=86 Identities=21% Similarity=0.214 Sum_probs=50.6
Q ss_pred CCCEEEEEcccccccccccCC----------------------------CCCcEEEEeeCCChhhHHHHHHhcCCC-Ccc
Q 023158 41 GVKRVVDLCAAPGSWSQPMAP----------------------------IEGVIQVQGDITNARTAEVVIRHFDGC-KAD 91 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map----------------------------~~gv~~i~gDIt~~~~~~~i~~~l~~~-~~D 91 (286)
.|.+||||.||+|+...+... -..+.++..|.+. . .+.+... .||
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~--~----L~~~~~~~~FD 116 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR--A----LKQLGTREPFD 116 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH--H----HHhcCCCCccc
Confidence 578999999999998762111 1234455555541 1 1222322 499
Q ss_pred EEEeCCCCCCCCCCcccHHHHHHHHHHHHHH--HHhcccCCcEEEEEEccCCC
Q 023158 92 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTV--VTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 92 lVlsDgap~~tG~~~~D~~~~~~L~~aaL~~--a~~vLkpGG~fV~Kif~g~~ 142 (286)
+|..|-.-. .|+.+. ..++.. ...+|+|||.+|+..-....
T Consensus 117 lVflDPPy~-~~l~~~---------~~~~~~~~~~~~L~~~~~iv~E~~~~~~ 159 (187)
T COG0742 117 LVFLDPPYA-KGLLDK---------ELALLLLEENGWLKPGALIVVEHDKDVE 159 (187)
T ss_pred EEEeCCCCc-cchhhH---------HHHHHHHHhcCCcCCCcEEEEEeCCCcC
Confidence 999996432 232211 112222 45789999999998765543
No 172
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=96.03 E-value=0.0067 Score=55.69 Aligned_cols=119 Identities=20% Similarity=0.248 Sum_probs=72.5
Q ss_pred cCCcCCCCEEEEEcccccccccccCCCCCcE-EEEeeCCChhhHHHHH------------------HhcCCCCccEEEeC
Q 023158 36 FNIFEGVKRVVDLCAAPGSWSQPMAPIEGVI-QVQGDITNARTAEVVI------------------RHFDGCKADLVVCD 96 (286)
Q Consensus 36 f~l~~~g~~VLDLgaaPGswSq~map~~gv~-~i~gDIt~~~~~~~i~------------------~~l~~~~~DlVlsD 96 (286)
|.+-+.-..++|+||+-|..+..+.. .||. .++.|.+-- +++.-. -.|.+..+|||++.
T Consensus 67 fD~kk~fp~a~diGcs~G~v~rhl~~-e~vekli~~DtS~~-M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisS 144 (325)
T KOG2940|consen 67 FDCKKSFPTAFDIGCSLGAVKRHLRG-EGVEKLIMMDTSYD-MIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISS 144 (325)
T ss_pred HHHhhhCcceeecccchhhhhHHHHh-cchhheeeeecchH-HHHHhhccCCCceEEEEEecchhcccccccchhhhhhh
Confidence 33334567999999999998874432 2221 223332221 111000 01445689999998
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHh-cCCeeEeeCCCCCCC
Q 023158 97 GAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL-FFPVVTFAKPKSSRN 167 (286)
Q Consensus 97 gap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~-~F~~V~~~KP~sSR~ 167 (286)
++..|+ .+ +-..+..+...|||.|.|+..+|.|.+.-+|...|+. ..++.--+-|+-|-.
T Consensus 145 lslHW~-----Nd------LPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf 205 (325)
T KOG2940|consen 145 LSLHWT-----ND------LPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPF 205 (325)
T ss_pred hhhhhh-----cc------CchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChh
Confidence 865443 21 1233456778999999999999999998888765543 244555555666543
No 173
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=96.01 E-value=0.024 Score=53.57 Aligned_cols=33 Identities=18% Similarity=0.221 Sum_probs=23.0
Q ss_pred CCCEEEEEcccccccccccCCCCCcEEEEeeCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITN 74 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~ 74 (286)
++.+|||||||+|.++..++. .+..++..|+..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~-~~~~V~gvD~s~ 205 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT-PGMQLTGIEISA 205 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh-cCCEEEEEeCCH
Confidence 468999999999999985554 234444555443
No 174
>PLN02823 spermine synthase
Probab=95.91 E-value=0.056 Score=51.97 Aligned_cols=67 Identities=27% Similarity=0.251 Sum_probs=42.1
Q ss_pred CCccEEEeCCC-CCCCCCCcccHHHHHHHH-HHHHH-HHHhcccCCcEEEEEEcc------CCChHHHHHHHHhcCCeeE
Q 023158 88 CKADLVVCDGA-PDVTGLHDMDEFVQSQLI-LAGLT-VVTHVLKEGGKFIAKIFR------GKDTSLLYCQLKLFFPVVT 158 (286)
Q Consensus 88 ~~~DlVlsDga-p~~tG~~~~D~~~~~~L~-~aaL~-~a~~vLkpGG~fV~Kif~------g~~~~~l~~~l~~~F~~V~ 158 (286)
+++|+|+.|.. |...|.. ..|. ...+. .+.+.|+|||.||+-.-. ......++..++..|..|.
T Consensus 175 ~~yDvIi~D~~dp~~~~~~-------~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~ 247 (336)
T PLN02823 175 EKFDVIIGDLADPVEGGPC-------YQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVV 247 (336)
T ss_pred CCccEEEecCCCccccCcc-------hhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCCCEE
Confidence 57999999963 1111111 0111 23345 677999999999875422 1124567778888999988
Q ss_pred eeC
Q 023158 159 FAK 161 (286)
Q Consensus 159 ~~K 161 (286)
.+.
T Consensus 248 ~y~ 250 (336)
T PLN02823 248 PYT 250 (336)
T ss_pred EEE
Confidence 775
No 175
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=95.91 E-value=0.035 Score=54.54 Aligned_cols=56 Identities=23% Similarity=0.394 Sum_probs=36.2
Q ss_pred cCCCCEEEEEcccccccccccCC--------------------------CCCcEEEEeeCCChhhHHHHHHhcCCCCccE
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAP--------------------------IEGVIQVQGDITNARTAEVVIRHFDGCKADL 92 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map--------------------------~~gv~~i~gDIt~~~~~~~i~~~l~~~~~Dl 92 (286)
+.++.+|||||||+|.++..++. +.+++++++|+.+. +..+ .+.+..+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~--l~~~--~~~~~~~D~ 365 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV--LPKQ--PWAGQIPDV 365 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH--HHHH--HhcCCCCCE
Confidence 35678999999999999884332 23566677766432 1111 122346999
Q ss_pred EEeCCC
Q 023158 93 VVCDGA 98 (286)
Q Consensus 93 VlsDga 98 (286)
|+.|.+
T Consensus 366 vi~dPP 371 (431)
T TIGR00479 366 LLLDPP 371 (431)
T ss_pred EEECcC
Confidence 999964
No 176
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.90 E-value=0.014 Score=51.74 Aligned_cols=107 Identities=15% Similarity=0.130 Sum_probs=52.7
Q ss_pred CCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHH----------------------HHhcCCCCccEEEeCCC
Q 023158 42 VKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVV----------------------IRHFDGCKADLVVCDGA 98 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i----------------------~~~l~~~~~DlVlsDga 98 (286)
...+||+|||-|.|...++. .|+..+|..|+......... ...+..+.+|-|.-.-.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 34899999999999985543 24455555555544322111 11122234444433321
Q ss_pred CCCCCCCcccHHHHHHH-HHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHh
Q 023158 99 PDVTGLHDMDEFVQSQL-ILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 152 (286)
Q Consensus 99 p~~tG~~~~D~~~~~~L-~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~ 152 (286)
--+.--+ + .--.| ...-+....++|+|||.+.+++=...-.......+..
T Consensus 98 DPWpK~r---H-~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~ 148 (195)
T PF02390_consen 98 DPWPKKR---H-HKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE 148 (195)
T ss_dssp ----SGG---G-GGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred CCCcccc---h-hhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 0000000 0 00011 1344677889999999998876554444445555544
No 177
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=95.83 E-value=0.014 Score=53.84 Aligned_cols=82 Identities=22% Similarity=0.242 Sum_probs=53.1
Q ss_pred cCCCCEEEEEcccccccccccCC---------------------------CCCcEEEEeeCCChhhHHHHHHhcCCCCcc
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAP---------------------------IEGVIQVQGDITNARTAEVVIRHFDGCKAD 91 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map---------------------------~~gv~~i~gDIt~~~~~~~i~~~l~~~~~D 91 (286)
+++|.+||=||||.|.--..+.- .++++-|--|.+++.-- ..+- .-+|
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KY----RmlV-gmVD 228 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKY----RMLV-GMVD 228 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchhe----eeee-eeEE
Confidence 68999999999999976553322 23444555555554211 1111 3699
Q ss_pred EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 92 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 92 lVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
+|++|.++. |. ++.....|...||+||.||+.+-
T Consensus 229 vIFaDvaqp-------dq------~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 229 VIFADVAQP-------DQ------ARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred EEeccCCCc-------hh------hhhhhhhhhhhhccCCeEEEEEe
Confidence 999998742 11 22333347889999999998764
No 178
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.82 E-value=0.011 Score=59.35 Aligned_cols=99 Identities=18% Similarity=0.189 Sum_probs=56.5
Q ss_pred HHHHHHHcCCc-CC--CCEEEEEcccccccccccCCCCCcEEEEeeCC--ChhhHHHHHH-------------h--cCCC
Q 023158 29 LLQIDEEFNIF-EG--VKRVVDLCAAPGSWSQPMAPIEGVIQVQGDIT--NARTAEVVIR-------------H--FDGC 88 (286)
Q Consensus 29 L~eId~~f~l~-~~--g~~VLDLgaaPGswSq~map~~gv~~i~gDIt--~~~~~~~i~~-------------~--l~~~ 88 (286)
+-+|++-..++ .+ ...+||+|||.|+|...|.+. ||+.+..-.. ++...+-+.+ + +...
T Consensus 102 id~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~ 180 (506)
T PF03141_consen 102 IDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSN 180 (506)
T ss_pred HHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCcc
Confidence 44666666653 22 357999999999999987753 5554432111 1111111111 1 2345
Q ss_pred CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 89 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 89 ~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
.||+|-|-..- +.....- .-.|-.+-|+|||||.||..-.
T Consensus 181 ~fDmvHcsrc~----i~W~~~~------g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 181 AFDMVHCSRCL----IPWHPND------GFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred chhhhhccccc----ccchhcc------cceeehhhhhhccCceEEecCC
Confidence 68988876532 1111110 1134567899999999998654
No 179
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.78 E-value=0.016 Score=51.60 Aligned_cols=33 Identities=27% Similarity=0.199 Sum_probs=21.7
Q ss_pred CCCEEEEEcccccccccccCCCCCcEEEEeeCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDIT 73 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt 73 (286)
.|..|+|||||+|.++...+-+..-.++..|+-
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD 77 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDID 77 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecC
Confidence 567999999999999984443222334444443
No 180
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=95.73 E-value=0.041 Score=53.38 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=22.9
Q ss_pred CCCEEEEEcccccccccccCCCCCcEEEEeeCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITN 74 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~ 74 (286)
++.+|||||||.|.++..++. .+..++..|+..
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~-~~~~v~~vE~~~ 265 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG-PDTQLTGIEIES 265 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh-cCCeEEEEECCH
Confidence 457999999999999986653 234444555443
No 181
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=95.71 E-value=0.043 Score=47.45 Aligned_cols=101 Identities=24% Similarity=0.267 Sum_probs=50.6
Q ss_pred cCCCCEEEEEcccccccccccCCC-CCcEEEEeeCCChhhHHHHH---------------------------HhcCCCCc
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPI-EGVIQVQGDITNARTAEVVI---------------------------RHFDGCKA 90 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~-~gv~~i~gDIt~~~~~~~i~---------------------------~~l~~~~~ 90 (286)
...+.+||+||||.|--+..++.. .+..++.-|..+ .++.+. +.+...+|
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~ 120 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSF 120 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSB
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhccccccccccCcEEEecCcccccccccccC
Confidence 457889999999999555432222 233344444333 111111 11233579
Q ss_pred cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEE-ccCCChHHHHHHHHh
Q 023158 91 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI-FRGKDTSLLYCQLKL 152 (286)
Q Consensus 91 DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki-f~g~~~~~l~~~l~~ 152 (286)
|+|++- |+. . ++ ++....+....++|+++|.+++-. .|......|+..+++
T Consensus 121 D~Ilas---Dv~--Y--~~----~~~~~L~~tl~~ll~~~~~vl~~~~~R~~~~~~F~~~~~k 172 (173)
T PF10294_consen 121 DVILAS---DVL--Y--DE----ELFEPLVRTLKRLLKPNGKVLLAYKRRRKSEQEFFDRLKK 172 (173)
T ss_dssp SEEEEE---S----S---G----GGHHHHHHHHHHHBTT-TTEEEEEE-S-TGGCHHHHHH--
T ss_pred CEEEEe---ccc--c--hH----HHHHHHHHHHHHHhCCCCEEEEEeCEecHHHHHHHHHhhh
Confidence 998862 221 1 11 234555666778999999866544 455556677776654
No 182
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.50 E-value=0.035 Score=48.65 Aligned_cols=88 Identities=20% Similarity=0.228 Sum_probs=61.7
Q ss_pred CCCCEEEEEccccccccccc------------------------CCCCCcEEEEeeCCChhhHHHHHHhcCCCCccEEEe
Q 023158 40 EGVKRVVDLCAAPGSWSQPM------------------------APIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVC 95 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~m------------------------ap~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVls 95 (286)
..|.-||+||.|+|-++..+ ...+|+.++.||..+..+. +.+ ..+..||.|+|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~--l~e-~~gq~~D~viS 123 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTT--LGE-HKGQFFDSVIS 123 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHH--Hhh-cCCCeeeeEEe
Confidence 45789999999999998721 2257899999999987642 222 34578999999
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 96 DGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 96 Dgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
-... .++.-... .+.|+.+...|++||.+|.=.+.
T Consensus 124 ~lPl-----l~~P~~~~----iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 124 GLPL-----LNFPMHRR----IAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred cccc-----ccCcHHHH----HHHHHHHHHhcCCCCeEEEEEec
Confidence 6532 12222222 45567778899999999976665
No 183
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=95.48 E-value=0.056 Score=47.52 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=48.1
Q ss_pred CCCEEEEEcccccccccccCC---------------------------CC-CcEEEEeeCCChhhHHHHHHhcC-CCCcc
Q 023158 41 GVKRVVDLCAAPGSWSQPMAP---------------------------IE-GVIQVQGDITNARTAEVVIRHFD-GCKAD 91 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map---------------------------~~-gv~~i~gDIt~~~~~~~i~~~l~-~~~~D 91 (286)
.+.+|||||||+|+++..... +. .+.++++|+.+. +..... ...+|
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~-----l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA-----LKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH-----HHHhhccCCCce
Confidence 578999999999999873221 11 244555555332 111111 22478
Q ss_pred EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCC
Q 023158 92 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 141 (286)
Q Consensus 92 lVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~ 141 (286)
+|+.|-.. ..+. . ..+ ...+.. ..+|+++|.+|+..-...
T Consensus 124 vv~~DPPy-~~~~--~-----~~~-l~~l~~-~~~l~~~~iiv~E~~~~~ 163 (189)
T TIGR00095 124 VIYLDPPF-FNGA--L-----QAL-LELCEN-NWILEDTVLIVVEEDREP 163 (189)
T ss_pred EEEECcCC-CCCc--H-----HHH-HHHHHH-CCCCCCCeEEEEEecCCC
Confidence 89888533 2211 1 112 222222 458999999998866543
No 184
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=95.47 E-value=0.039 Score=51.27 Aligned_cols=81 Identities=25% Similarity=0.341 Sum_probs=47.4
Q ss_pred CCEEEEEcccccccccccCCCCCcEEEEeeCCCh--hhHHHHHHh---------c--CCCCccEEEeCCCCCCCCCCccc
Q 023158 42 VKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNA--RTAEVVIRH---------F--DGCKADLVVCDGAPDVTGLHDMD 108 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~--~~~~~i~~~---------l--~~~~~DlVlsDgap~~tG~~~~D 108 (286)
..++||||||-|+-+..|+|.-. ..-.|+. .+...+.++ . .+.+||+|.|- |+ .|
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~----~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscL---Nv-----LD 162 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFK----EVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCL---NV-----LD 162 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcc----eEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeeh---hh-----hh
Confidence 46899999999999998887422 1222222 222222110 0 12457777662 11 11
Q ss_pred HHHHHHHHHHHHHHHHhcccCCcEEEEEE
Q 023158 109 EFVQSQLILAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 109 ~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 137 (286)
.. .-....|+.+.+.|+|+|.+|+-+
T Consensus 163 Rc---~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 163 RC---DRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred cc---CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 10 112556788888999999998765
No 185
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=95.46 E-value=0.031 Score=50.00 Aligned_cols=97 Identities=22% Similarity=0.230 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCC-C-CCcEEEEeeCCChhh--HHH------------------
Q 023158 23 ARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAP-I-EGVIQVQGDITNART--AEV------------------ 80 (286)
Q Consensus 23 aRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map-~-~gv~~i~gDIt~~~~--~~~------------------ 80 (286)
++..-+|+++.-+. ....+||++|++.|-=+..|+. + ++.+++..|+..... +++
T Consensus 30 ~~~~g~lL~~l~~~---~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda 106 (205)
T PF01596_consen 30 SPETGQLLQMLVRL---TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHHHHHH---HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred CHHHHHHHHHHHHh---cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence 34445555544443 4667999999999986664431 1 245666666644311 111
Q ss_pred ------HHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 81 ------VIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 81 ------i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
+...-..++||+|+-|+.. +.| ...+..+.++|+|||.+|+-
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~K--------~~y------~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDADK--------RNY------LEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEESTG--------GGH------HHHHHHHHHHEEEEEEEEEE
T ss_pred HhhHHHHHhccCCCceeEEEEcccc--------cch------hhHHHHHhhhccCCeEEEEc
Confidence 1111112479999999853 233 34566677999999999975
No 186
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=95.45 E-value=0.015 Score=53.79 Aligned_cols=57 Identities=12% Similarity=0.186 Sum_probs=38.7
Q ss_pred cCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 97 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDg 97 (286)
+.++.+|||+|||+|..+..++... ..++..|+... .++.+.+.+....+.++.+|+
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~avE~d~~-~~~~~~~~~~~~~v~~i~~D~ 96 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERA-AKVTAVEIDRD-LAPILAETFAEDNLTIIEGDA 96 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhC-CcEEEEECCHH-HHHHHHHhhccCceEEEEChh
Confidence 3577899999999999999776542 36667777753 444444444334566677665
No 187
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.43 E-value=0.013 Score=51.42 Aligned_cols=87 Identities=25% Similarity=0.351 Sum_probs=46.6
Q ss_pred CCCEEEEEccccccccccc-CC--------------------------CC-CcEEEEeeCCChhhHHHHHHhcCCCCccE
Q 023158 41 GVKRVVDLCAAPGSWSQPM-AP--------------------------IE-GVIQVQGDITNARTAEVVIRHFDGCKADL 92 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~m-ap--------------------------~~-gv~~i~gDIt~~~~~~~i~~~l~~~~~Dl 92 (286)
.|.+||||+||+|+...+. .. .. .+.++.+|.... ..+.. -.+.+||+
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~--l~~~~--~~~~~fDi 117 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF--LLKLA--KKGEKFDI 117 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH--HHHHH--HCTS-EEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH--HHhhc--ccCCCceE
Confidence 6789999999999877621 11 01 134445544332 11110 13578999
Q ss_pred EEeCCCCCCCCCCcccHHHHHHHHHHHHHHH--HhcccCCcEEEEEEccCCC
Q 023158 93 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVV--THVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 93 VlsDgap~~tG~~~~D~~~~~~L~~aaL~~a--~~vLkpGG~fV~Kif~g~~ 142 (286)
|..|- |...+. . ...++... ..+|+++|.+|+.+-...+
T Consensus 118 IflDP-PY~~~~-----~-----~~~~l~~l~~~~~l~~~~~ii~E~~~~~~ 158 (183)
T PF03602_consen 118 IFLDP-PYAKGL-----Y-----YEELLELLAENNLLNEDGLIIIEHSKKED 158 (183)
T ss_dssp EEE---STTSCH-----H-----HHHHHHHHHHTTSEEEEEEEEEEEETTSS
T ss_pred EEECC-Ccccch-----H-----HHHHHHHHHHCCCCCCCEEEEEEecCCCC
Confidence 99994 543221 1 11222222 4899999999998866543
No 188
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=95.43 E-value=0.052 Score=48.75 Aligned_cols=95 Identities=14% Similarity=0.219 Sum_probs=53.7
Q ss_pred HHHHHHHcCCcCCCC-EEEEEcccccccccccCC-CCCcEEEEeeCCChhhHHHHHHhc---------------------
Q 023158 29 LLQIDEEFNIFEGVK-RVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTAEVVIRHF--------------------- 85 (286)
Q Consensus 29 L~eId~~f~l~~~g~-~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~~~i~~~l--------------------- 85 (286)
++++..++ |.... +||+||+|+|-..-.+++ +|++++..-|..... ...|....
T Consensus 14 Il~vL~~~--l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~-~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w 90 (204)
T PF06080_consen 14 ILEVLKQY--LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNL-RPSIRAWIAEAGLPNVRPPLALDVSAPPW 90 (204)
T ss_pred HHHHHHHH--hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHH-HhhHHHHHHhcCCcccCCCeEeecCCCCC
Confidence 34444444 45444 599999999987664443 456666555555432 11111111
Q ss_pred --------CCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEE
Q 023158 86 --------DGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 86 --------~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~ 135 (286)
....+|.|+|- | +=|...-..+...+..+.++|++||.|++
T Consensus 91 ~~~~~~~~~~~~~D~i~~~---N------~lHI~p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCI---N------MLHISPWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred ccccccccCCCCcceeeeh---h------HHHhcCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 11234554441 1 11223334557778889999999999885
No 189
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.37 E-value=0.074 Score=47.95 Aligned_cols=99 Identities=22% Similarity=0.201 Sum_probs=60.8
Q ss_pred chhHHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCC--------------------------CCCcEEEEeeCCC
Q 023158 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAP--------------------------IEGVIQVQGDITN 74 (286)
Q Consensus 21 ~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map--------------------------~~gv~~i~gDIt~ 74 (286)
|||.-|--++.-.+.+. +++|.+||=|||+.|.-..+++- .+++.-|-+|.+.
T Consensus 57 ~RSKLaAaIl~Gl~~~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~ 135 (231)
T COG1889 57 RRSKLAAAILKGLKNFP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARK 135 (231)
T ss_pred chhHHHHHHHcCcccCC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCC
Confidence 35544444443333333 68999999999999987663322 1344556677776
Q ss_pred hhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcE--EEEEEc
Q 023158 75 ARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGK--FIAKIF 138 (286)
Q Consensus 75 ~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~--fV~Kif 138 (286)
+..-. ++- +.+|+|.+|-|-- .|+ .-+...|...||+||. +++|.-
T Consensus 136 P~~Y~----~~V-e~VDviy~DVAQp----------~Qa---~I~~~Na~~FLk~~G~~~i~iKAr 183 (231)
T COG1889 136 PEKYR----HLV-EKVDVIYQDVAQP----------NQA---EILADNAEFFLKKGGYVVIAIKAR 183 (231)
T ss_pred cHHhh----hhc-ccccEEEEecCCc----------hHH---HHHHHHHHHhcccCCeEEEEEEee
Confidence 65332 222 4699999998621 122 3345667889999995 445654
No 190
>PRK11524 putative methyltransferase; Provisional
Probab=95.23 E-value=0.13 Score=47.93 Aligned_cols=92 Identities=13% Similarity=0.190 Sum_probs=53.1
Q ss_pred cEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCC-C---C-CcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 65 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVT-G---L-HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~t-G---~-~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
..+++||..+.. +.+.++++|+|++|-.-... + . ...+.......+...+..+.++|||||.|++- ..
T Consensus 9 ~~i~~gD~~~~l------~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~-~~ 81 (284)
T PRK11524 9 KTIIHGDALTEL------KKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM-NS 81 (284)
T ss_pred CEEEeccHHHHH------HhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE-cC
Confidence 356788877642 34556789999999643220 0 0 01112223345678899999999999999873 33
Q ss_pred CCChHHHHHHHHhcC---CeeEeeCCC
Q 023158 140 GKDTSLLYCQLKLFF---PVVTFAKPK 163 (286)
Q Consensus 140 g~~~~~l~~~l~~~F---~~V~~~KP~ 163 (286)
......+...++..| ..+...|+.
T Consensus 82 ~~~~~~~~~~~~~~f~~~~~iiW~k~~ 108 (284)
T PRK11524 82 TENMPFIDLYCRKLFTIKSRIVWSYDS 108 (284)
T ss_pred chhhhHHHHHHhcCcceEEEEEEEeCC
Confidence 322333333344444 344445654
No 191
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=95.09 E-value=0.048 Score=49.72 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=32.8
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhcC-CCCccEEEeCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHFD-GCKADLVVCDG 97 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l~-~~~~DlVlsDg 97 (286)
.++.+|||+|||+|.++..+.... ..++..|+... ..+.+.+.+. ...+.++.+|.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~-~~~~l~~~~~~~~~v~v~~~D~ 84 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPR-LAEILRKLLSLYERLEVIEGDA 84 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHH-HHHHHHHHhCcCCcEEEEECch
Confidence 467899999999999999665432 23445555442 3333333332 12345555554
No 192
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.05 E-value=0.16 Score=47.66 Aligned_cols=125 Identities=22% Similarity=0.271 Sum_probs=68.6
Q ss_pred CEEEEEcccccccccccCCCCCc-EEEEeeCCChhhHHH--------------------------HHHhcCCCCccEEEe
Q 023158 43 KRVVDLCAAPGSWSQPMAPIEGV-IQVQGDITNARTAEV--------------------------VIRHFDGCKADLVVC 95 (286)
Q Consensus 43 ~~VLDLgaaPGswSq~map~~gv-~~i~gDIt~~~~~~~--------------------------i~~~l~~~~~DlVls 95 (286)
.+||=+|-|.|++++.+...+.+ ..+.+||-. ..++- .++... .+||+|+.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~-~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~-~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDP-AVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE-EKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCH-HHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC-CcCCEEEE
Confidence 59999999999999943322211 111222211 11111 112222 37999999
Q ss_pred CCCCCCCCC-CcccHHHHHHHHHHHHHHHHhcccCCcEEEEE---Ec-cCCChHHHHHHHHhcCCeeEee-CCCCCCCCc
Q 023158 96 DGAPDVTGL-HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK---IF-RGKDTSLLYCQLKLFFPVVTFA-KPKSSRNSS 169 (286)
Q Consensus 96 Dgap~~tG~-~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K---if-~g~~~~~l~~~l~~~F~~V~~~-KP~sSR~~S 169 (286)
|....+ |- ..+. ...-+..+.+.|+++|.||.- .| +.+.....+..++..|..+..+ .+.-+=.+.
T Consensus 156 D~tdp~-gp~~~Lf-------t~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g 227 (282)
T COG0421 156 DSTDPV-GPAEALF-------TEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSG 227 (282)
T ss_pred cCCCCC-CcccccC-------CHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccccceeccceecCC
Confidence 986432 32 1111 133457788999999999987 33 2233556666677777666543 222222333
Q ss_pred hhhhhhhc
Q 023158 170 IEAFAVCE 177 (286)
Q Consensus 170 ~E~yvVc~ 177 (286)
.+.|+++.
T Consensus 228 ~~~f~~~s 235 (282)
T COG0421 228 FWGFIVAS 235 (282)
T ss_pred ceEEEEee
Confidence 34555555
No 193
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=95.00 E-value=0.21 Score=47.71 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=23.2
Q ss_pred CCCEEEEEcccccccccccC-CCCCcEEEEeeCCCh
Q 023158 41 GVKRVVDLCAAPGSWSQPMA-PIEGVIQVQGDITNA 75 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~ma-p~~gv~~i~gDIt~~ 75 (286)
.+.+|||||||.|....-++ ..++..++..||...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~ 149 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQ 149 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHH
Confidence 45799999999997655322 234566666666543
No 194
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.98 E-value=0.062 Score=50.81 Aligned_cols=119 Identities=19% Similarity=0.267 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHHHHcCCcC---CCCEEEEEccccccccccc----------------C--------------CCCCc-EE
Q 023158 22 RARSAFKLLQIDEEFNIFE---GVKRVVDLCAAPGSWSQPM----------------A--------------PIEGV-IQ 67 (286)
Q Consensus 22 raRsa~KL~eId~~f~l~~---~g~~VLDLgaaPGswSq~m----------------a--------------p~~gv-~~ 67 (286)
|.|-..-...|.+...-++ ...+|||++||+|-..... . -+.++ +|
T Consensus 113 R~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f 192 (311)
T PF12147_consen 113 RQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARF 192 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEE
Confidence 5565555555555544332 3459999999999976611 0 12333 67
Q ss_pred EEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc-cCCChHHH
Q 023158 68 VQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF-RGKDTSLL 146 (286)
Q Consensus 68 i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif-~g~~~~~l 146 (286)
.++|..+..+...+ . -..+|++.-| +.+. +--..++...|.-....|.|||.+|-.-- -.+..+.+
T Consensus 193 ~~~dAfd~~~l~~l----~-p~P~l~iVsG------L~El--F~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~I 259 (311)
T PF12147_consen 193 EQGDAFDRDSLAAL----D-PAPTLAIVSG------LYEL--FPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMI 259 (311)
T ss_pred EecCCCCHhHhhcc----C-CCCCEEEEec------chhh--CCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHH
Confidence 77777776544222 1 2457777544 4321 12245677788888899999999986431 12234445
Q ss_pred HHHHHhc
Q 023158 147 YCQLKLF 153 (286)
Q Consensus 147 ~~~l~~~ 153 (286)
...|..+
T Consensus 260 Ar~LtsH 266 (311)
T PF12147_consen 260 ARVLTSH 266 (311)
T ss_pred HHHHhcc
Confidence 5556543
No 195
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=94.76 E-value=0.056 Score=50.11 Aligned_cols=41 Identities=29% Similarity=0.463 Sum_probs=27.6
Q ss_pred CccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 89 KADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 89 ~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
++|+|++-....+ --.+.++| ..|+.....+|||||.||+-
T Consensus 158 ~~D~v~s~fcLE~-a~~d~~~y------~~al~ni~~lLkpGG~Lil~ 198 (256)
T PF01234_consen 158 KFDCVISSFCLES-ACKDLDEY------RRALRNISSLLKPGGHLILA 198 (256)
T ss_dssp SEEEEEEESSHHH-H-SSHHHH------HHHHHHHHTTEEEEEEEEEE
T ss_pred chhhhhhhHHHHH-HcCCHHHH------HHHHHHHHHHcCCCcEEEEE
Confidence 4888887653111 01234454 77888999999999999964
No 196
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=94.43 E-value=0.083 Score=58.05 Aligned_cols=170 Identities=21% Similarity=0.225 Sum_probs=95.7
Q ss_pred HHHHHHhCchh---HHHHHHHHH-HHHcCCc---------CCCCEEEEEccccccccc--c--cC-----CCCCc-----
Q 023158 13 YRKAKEEGWRA---RSAFKLLQI-DEEFNIF---------EGVKRVVDLCAAPGSWSQ--P--MA-----PIEGV----- 65 (286)
Q Consensus 13 ~r~Ak~~g~ra---Rsa~KL~eI-d~~f~l~---------~~g~~VLDLgaaPGswSq--~--ma-----p~~gv----- 65 (286)
+++++=..||. ||.+|=... .-.+.++ +.|+.+.=|||.-+.=.. + ++ .++||
T Consensus 466 ~~R~~Fs~yR~~~DRSl~KD~avl~f~~~~i~~~~g~~~l~~g~SmaYlGAS~tH~~sdeP~Ii~~lr~G~ipGVp~Pss 545 (1289)
T PF06016_consen 466 ARRSLFSRYRKPSDRSLLKDTAVLTFASSVIDPVTGLPVLPDGFSMAYLGASGTHPDSDEPTIIEPLRSGKIPGVPQPSS 545 (1289)
T ss_dssp HHHHHHHHCB--S-HHHHHHHHHHHHHCTSBBCCCSSBCS-TTEEEEEECEE-TTTTTSS-CCHHHHHHT-STTS--ECE
T ss_pred HHHHHHHHhhcccchhhhhhhHHHHHHHHhcCCccCCccccCCceEEEeccccCCCCCCCCeeehHHhcCCCCCCCCCce
Confidence 45555455555 888885433 3344433 568899999998665441 1 11 13443
Q ss_pred -EEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc-cCCC-
Q 023158 66 -IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF-RGKD- 142 (286)
Q Consensus 66 -~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif-~g~~- 142 (286)
.++.=|+++-... .+...+..+.|.+|-||----..|-. |-..+.++..+.+..+.+..-+||.+|+|+- -...
T Consensus 546 I~QfGyDVt~G~I~-Dl~~p~pTGtf~fVYSDVDQV~dg~~--dl~As~r~~~~~l~~~l~~tt~GG~~v~KiNFPT~~v 622 (1289)
T PF06016_consen 546 IRQFGYDVTRGSIC-DLTRPFPTGTFTFVYSDVDQVQDGGD--DLVASNRAAISQLDVALQMTTAGGSTVVKINFPTRAV 622 (1289)
T ss_dssp EEEECCC-SSSEE---TTS--S---EEEEEEE-----SSTT--THHHHHHHHHHHHHHHHHHEEEEEEEEEEESS--CCH
T ss_pred eeeeceeeccceEE-eeccCCCCCceEEEEecchhhccCCc--chhhhhHHHHHHHHHHHHhhcCCceEEEEEcCCChHH
Confidence 3332333332211 11223556789999999743333333 3345677888899999999999999999995 3333
Q ss_pred hHHHHHHHHhcCCeeEeeCCCCCCCCchhhhhhhcCCCCCCCCCC
Q 023158 143 TSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCENYFPPEGFNP 187 (286)
Q Consensus 143 ~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~yvVc~gf~~~~~~~~ 187 (286)
...|+.++...|..+.+.||.-. .|.|.|+|-.+......+.|
T Consensus 623 W~~if~~~s~~~~~~~ivKPlI~--NNvEvflv~~~~~~~~~~~~ 665 (1289)
T PF06016_consen 623 WTQIFRQYSPRFTSYHIVKPLIV--NNVEVFLVFGGRTPSGNLTP 665 (1289)
T ss_dssp HHHHHHHCCCCECEEEEEEEESS--SS--EEEEECECSTT----B
T ss_pred HHHHHHHhccccceeeEecceee--cceEEEEEEEeecCCCCCCC
Confidence 55677888888999999999986 67999999433334444444
No 197
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=94.11 E-value=0.068 Score=49.04 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=25.5
Q ss_pred cCCCCEEEEEcccccccccccCCCCCcEEEEeeCCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITN 74 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~ 74 (286)
+.++.+|||+|||+|..+..+... +..++..|+..
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~ 61 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDP 61 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCH
Confidence 357889999999999999966554 33555555554
No 198
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=94.08 E-value=0.35 Score=44.27 Aligned_cols=111 Identities=17% Similarity=0.114 Sum_probs=65.9
Q ss_pred CCCEEEEEcccccccccccCCCCCc-EEEEeeCCChhhHHHHHHhc-------------------------CCC-CccEE
Q 023158 41 GVKRVVDLCAAPGSWSQPMAPIEGV-IQVQGDITNARTAEVVIRHF-------------------------DGC-KADLV 93 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map~~gv-~~i~gDIt~~~~~~~i~~~l-------------------------~~~-~~DlV 93 (286)
...+||=||-|-|+....+...+.+ .+...||-.. ..+...+.| ..+ ++|+|
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~-Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPE-VVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HH-HHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChH-HHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 5789999999999998866554432 3334455432 222211111 123 79999
Q ss_pred EeCCCC-CCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCC----ChHHHHHHHHhcCCeeEee
Q 023158 94 VCDGAP-DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK----DTSLLYCQLKLFFPVVTFA 160 (286)
Q Consensus 94 lsDgap-~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~----~~~~l~~~l~~~F~~V~~~ 160 (286)
+.|..- ...+..- ....-+..+.+.|+|||.|++..-... ....+...++..|..|..+
T Consensus 155 i~D~~dp~~~~~~l--------~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~ 218 (246)
T PF01564_consen 155 IVDLTDPDGPAPNL--------FTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFPQVKPY 218 (246)
T ss_dssp EEESSSTTSCGGGG--------SSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEEEEE
T ss_pred EEeCCCCCCCcccc--------cCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCCceEEE
Confidence 999742 2211110 124456788899999999998763222 2445567788889877654
No 199
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.92 E-value=0.047 Score=54.86 Aligned_cols=125 Identities=17% Similarity=0.186 Sum_probs=67.5
Q ss_pred CCEEEEEcccccccccccCCCCCcEEEEe-eCCChhhHHHHHH------------hcC--CCCccEEEeCCCCCCCCCCc
Q 023158 42 VKRVVDLCAAPGSWSQPMAPIEGVIQVQG-DITNARTAEVVIR------------HFD--GCKADLVVCDGAPDVTGLHD 106 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map~~gv~~i~g-DIt~~~~~~~i~~------------~l~--~~~~DlVlsDgap~~tG~~~ 106 (286)
-..|+|..||-|||+..|...+ |-+... -...+.|+.-|.+ .|. ...+|||-+++-...
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~~-VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~----- 439 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDDP-VWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSL----- 439 (506)
T ss_pred eeeeeeecccccHHHHHhccCC-ceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhhh-----
Confidence 3589999999999999776533 322211 1123333333321 121 257999999975321
Q ss_pred ccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhcCCeeEeeCCCCCCCCchhhhhhhc
Q 023158 107 MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVCE 177 (286)
Q Consensus 107 ~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~yvVc~ 177 (286)
+..-..+..+|-++-|+|||||.+|+.-.-. -...+...++.+=-++.+..- .+-+...|..++|+
T Consensus 440 ---~~~rC~~~~illEmDRILRP~G~~iiRD~~~-vl~~v~~i~~~lrW~~~~~d~-e~g~~~~EkiL~~~ 505 (506)
T PF03141_consen 440 ---YKDRCEMEDILLEMDRILRPGGWVIIRDTVD-VLEKVKKIAKSLRWEVRIHDT-EDGPDGPEKILICQ 505 (506)
T ss_pred ---hcccccHHHHHHHhHhhcCCCceEEEeccHH-HHHHHHHHHHhCcceEEEEec-CCCCCCCceEEEEE
Confidence 1111234667778899999999999752210 122233333333223333321 22233467777764
No 200
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=93.90 E-value=0.15 Score=47.20 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=29.1
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 88 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 88 ~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
..||+|+|=--..|-.+.+-|+- +..-+.-+.++|.|||.||+.
T Consensus 165 ~~fDiIlcLSiTkWIHLNwgD~G-----L~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 165 PEFDIILCLSITKWIHLNWGDDG-----LRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccEEEEEEeeeeEecccccHH-----HHHHHHHHHHhhCcCcEEEEc
Confidence 56788777543333334444532 355677788999999999974
No 201
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=93.70 E-value=0.067 Score=50.40 Aligned_cols=22 Identities=9% Similarity=0.327 Sum_probs=18.5
Q ss_pred cCCCCEEEEEcccccccccccC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMA 60 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~ma 60 (286)
+.++.+|||+|||+|.++..+.
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll 55 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLL 55 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHH
Confidence 3578899999999999998544
No 202
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=93.59 E-value=0.49 Score=43.58 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=47.5
Q ss_pred CCCCEEEEEcccccccccccCC--CCCcEEEEeeCCChh--hHHHHH--------------------Hhc-C----CCCc
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAP--IEGVIQVQGDITNAR--TAEVVI--------------------RHF-D----GCKA 90 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map--~~gv~~i~gDIt~~~--~~~~i~--------------------~~l-~----~~~~ 90 (286)
.+..+||+||++.|-=+..|+. .++..++..|+.... ..++.. ..+ . .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 3567999999999975553321 123344444443221 111111 111 0 1479
Q ss_pred cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 91 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 91 DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
|+|+-|+.. +.| ..-+..+.++|+|||.+|+-
T Consensus 158 D~iFiDadK--------~~Y------~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 158 DFIFVDADK--------DNY------INYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred cEEEecCCH--------HHh------HHHHHHHHHhcCCCeEEEEc
Confidence 999998752 122 34456678999999999873
No 203
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=93.56 E-value=0.062 Score=51.89 Aligned_cols=76 Identities=24% Similarity=0.313 Sum_probs=46.0
Q ss_pred CCCEEEEEcccccccccc----------------cCCC-----------CCcEEEEeeCCChhhHHHHHHhcCCCCccEE
Q 023158 41 GVKRVVDLCAAPGSWSQP----------------MAPI-----------EGVIQVQGDITNARTAEVVIRHFDGCKADLV 93 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~----------------map~-----------~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlV 93 (286)
.+..|||+|||.|-.|.. |+.. ..+++|.|-|.+.+ +. +++|++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--------LP-Ek~Dvi 247 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIE--------LP-EKVDVI 247 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCcccccc--------Cc-hhccEE
Confidence 367999999999988761 2110 12455566555543 22 689999
Q ss_pred EeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEE
Q 023158 94 VCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 134 (286)
Q Consensus 94 lsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV 134 (286)
+|.-. .+-+ +.| .+++. .-.|.+.|+|.|.+.
T Consensus 248 ISEPM--G~mL--~NE----RMLEs-Yl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 248 ISEPM--GYML--VNE----RMLES-YLHARKWLKPNGKMF 279 (517)
T ss_pred Eeccc--hhhh--hhH----HHHHH-HHHHHhhcCCCCccc
Confidence 99732 1111 122 23333 345679999999865
No 204
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=93.53 E-value=0.33 Score=43.48 Aligned_cols=87 Identities=22% Similarity=0.255 Sum_probs=46.0
Q ss_pred HHHHHHcCCcCCCCEEEEEccccccccc--------------c-------------------cC----CCCCcEEEEeeC
Q 023158 30 LQIDEEFNIFEGVKRVVDLCAAPGSWSQ--------------P-------------------MA----PIEGVIQVQGDI 72 (286)
Q Consensus 30 ~eId~~f~l~~~g~~VLDLgaaPGswSq--------------~-------------------ma----p~~gv~~i~gDI 72 (286)
..|.++.+ +.++..++|||||-|.-.. + |. ....+.+.+||+
T Consensus 32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 34445555 5788999999999998543 0 00 012256779999
Q ss_pred CChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEE
Q 023158 73 TNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 134 (286)
Q Consensus 73 t~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV 134 (286)
.+....+.+ + ..+|+|+++--. +++. +..+|...+.-||+|-.+|
T Consensus 111 l~~~~~~~~---~--s~AdvVf~Nn~~-------F~~~-----l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 111 LDPDFVKDI---W--SDADVVFVNNTC-------FDPD-----LNLALAELLLELKPGARII 155 (205)
T ss_dssp TTHHHHHHH---G--HC-SEEEE--TT-------T-HH-----HHHHHHHHHTTS-TT-EEE
T ss_pred cccHhHhhh---h--cCCCEEEEeccc-------cCHH-----HHHHHHHHHhcCCCCCEEE
Confidence 987654433 2 358999987521 3432 2344555667788886665
No 205
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=93.38 E-value=0.47 Score=43.08 Aligned_cols=82 Identities=23% Similarity=0.243 Sum_probs=52.5
Q ss_pred CCCCEEEEEcccccccccccCC-CC-CcEEEEeeCCChhh------------------------HHHHHHhcCCCCccEE
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAP-IE-GVIQVQGDITNART------------------------AEVVIRHFDGCKADLV 93 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map-~~-gv~~i~gDIt~~~~------------------------~~~i~~~l~~~~~DlV 93 (286)
.+..+||++|.+.|-=+..|+. ++ ..+.+..|+..... ++.+.+ +..++||+|
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~~~~~fDli 136 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-LLDGSFDLV 136 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-ccCCCccEE
Confidence 4788999999999976665432 12 23555555554322 111111 223679999
Q ss_pred EeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 94 VCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 94 lsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
+-|.+..- | ...+..+.++|+|||.+|+-
T Consensus 137 FIDadK~~--------y------p~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 137 FIDADKAD--------Y------PEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEeCChhh--------C------HHHHHHHHHHhCCCcEEEEe
Confidence 98886421 1 45678888999999999975
No 206
>PRK13699 putative methylase; Provisional
Probab=93.35 E-value=0.56 Score=42.48 Aligned_cols=91 Identities=20% Similarity=0.312 Sum_probs=53.1
Q ss_pred EEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCc-----ccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccC
Q 023158 66 IQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHD-----MDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 140 (286)
Q Consensus 66 ~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~-----~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g 140 (286)
+.+.||-.+ +.+.+.++.+|+|+.|- |...|..+ .......+.....+.++.++|||||.+++ |.+
T Consensus 3 ~l~~gD~le------~l~~lpd~SVDLIiTDP-PY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i--f~~ 73 (227)
T PRK13699 3 RFILGNCID------VMARFPDNAVDFILTDP-PYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS--FYG 73 (227)
T ss_pred eEEechHHH------HHHhCCccccceEEeCC-CcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE--Eec
Confidence 344555443 33457788999999995 32212111 11111235567889999999999999885 433
Q ss_pred CC-hHHHHHHHHh-cC---CeeEeeCCCCC
Q 023158 141 KD-TSLLYCQLKL-FF---PVVTFAKPKSS 165 (286)
Q Consensus 141 ~~-~~~l~~~l~~-~F---~~V~~~KP~sS 165 (286)
.. ...+...++. -| +.+...|+...
T Consensus 74 ~~~~~~~~~al~~~GF~l~~~IiW~K~~~~ 103 (227)
T PRK13699 74 WNRVDRFMAAWKNAGFSVVGHLVFTKNYTS 103 (227)
T ss_pred cccHHHHHHHHHHCCCEEeeEEEEECCCCC
Confidence 32 3444444443 34 44566687654
No 207
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=93.34 E-value=1.1 Score=39.89 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=70.7
Q ss_pred CCEEEEEcccccccccccCC--CCCcEEEEeeCCChhhHHHH-----------------HHhcCCCCccEEEeCCCC---
Q 023158 42 VKRVVDLCAAPGSWSQPMAP--IEGVIQVQGDITNARTAEVV-----------------IRHFDGCKADLVVCDGAP--- 99 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map--~~gv~~i~gDIt~~~~~~~i-----------------~~~l~~~~~DlVlsDgap--- 99 (286)
..-++++|||.|--|..++. .+++..+..||.......-+ ..-+..+++|+++-+-.-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 67899999999998874432 26788899999865432211 111223455655555321
Q ss_pred --CCCCCCcccHH-----HHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhc-CCeeEe
Q 023158 100 --DVTGLHDMDEF-----VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FPVVTF 159 (286)
Q Consensus 100 --~~tG~~~~D~~-----~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~-F~~V~~ 159 (286)
..-|.++++.. .........+...-.+|.|.|.|.+-..+.....++...++.. |.....
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g~~~~~~ 191 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKGYGVRIA 191 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcccceeEE
Confidence 11111111110 0112234445566788999999999999988888888877664 544443
No 208
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=93.15 E-value=0.66 Score=42.02 Aligned_cols=85 Identities=25% Similarity=0.306 Sum_probs=50.6
Q ss_pred CCEEEEEcccccccccccC-CCCCcEEEEeeCCChhh--HHHHHHhc---------------CC-CC-ccEEEeCCCCCC
Q 023158 42 VKRVVDLCAAPGSWSQPMA-PIEGVIQVQGDITNART--AEVVIRHF---------------DG-CK-ADLVVCDGAPDV 101 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~ma-p~~gv~~i~gDIt~~~~--~~~i~~~l---------------~~-~~-~DlVlsDgap~~ 101 (286)
+.+++|+|+|+|-=..+++ -.|...+.-.|-....+ ++.+...+ .. .. +|+|+|.+-..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 5899999999997666654 22444444445444432 22222222 11 13 99999976211
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEE-EEccCC
Q 023158 102 TGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA-KIFRGK 141 (286)
Q Consensus 102 tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~-Kif~g~ 141 (286)
+...+..+..+|++||.|++ |...+.
T Consensus 147 --------------L~~l~e~~~pllk~~g~~~~~k~~~~~ 173 (215)
T COG0357 147 --------------LNVLLELCLPLLKVGGGFLAYKGLAGK 173 (215)
T ss_pred --------------hHHHHHHHHHhcccCCcchhhhHHhhh
Confidence 13345778899999999874 433443
No 209
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=93.15 E-value=0.062 Score=48.08 Aligned_cols=79 Identities=24% Similarity=0.334 Sum_probs=53.0
Q ss_pred CEEEEEccccccccc------------ccCC-----------C---CCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeC
Q 023158 43 KRVVDLCAAPGSWSQ------------PMAP-----------I---EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCD 96 (286)
Q Consensus 43 ~~VLDLgaaPGswSq------------~map-----------~---~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsD 96 (286)
..+.|||+|+|-.|- ..+| + .++.++.||..+-. | +.+|+|+|.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~--------f--e~ADvvicE 103 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD--------F--ENADVVICE 103 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc--------c--cccceeHHH
Confidence 589999999998876 1111 1 23667778777753 3 478999988
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEE-EEEccC
Q 023158 97 GAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI-AKIFRG 140 (286)
Q Consensus 97 gap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV-~Kif~g 140 (286)
| +|.....+-+..+++.++..||-.|+.| .+++.+
T Consensus 104 m---------lDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~~~ 139 (252)
T COG4076 104 M---------LDTALIEEKQVPVINAVLEFLRYDPTIIPQEVRIG 139 (252)
T ss_pred H---------hhHHhhcccccHHHHHHHHHhhcCCccccHHHhhc
Confidence 7 3444433444566777888999999987 344433
No 210
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=93.11 E-value=0.31 Score=42.40 Aligned_cols=107 Identities=20% Similarity=0.169 Sum_probs=59.8
Q ss_pred chhHHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCCC-CC---------cEEEEeeCCChhhH---HHHH-----
Q 023158 21 WRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPI-EG---------VIQVQGDITNARTA---EVVI----- 82 (286)
Q Consensus 21 ~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map~-~g---------v~~i~gDIt~~~~~---~~i~----- 82 (286)
.+...|+-|+.+-. .+++..|||-.||.|++..+.+-+ .+ +.++..||...... +.+.
T Consensus 12 L~~~lA~~ll~la~----~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~ 87 (179)
T PF01170_consen 12 LRPTLAAALLNLAG----WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE 87 (179)
T ss_dssp S-HHHHHHHHHHTT------TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C
T ss_pred CCHHHHHHHHHHhC----CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC
Confidence 34455666665433 368899999999999998732110 11 22667777654321 1111
Q ss_pred ----------Hh--cCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEE
Q 023158 83 ----------RH--FDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFI 134 (286)
Q Consensus 83 ----------~~--l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV 134 (286)
.. +..+.+|.|++|.. .|.+.-+......|-...+..+.++|++...++
T Consensus 88 ~~i~~~~~D~~~l~~~~~~~d~IvtnPP---yG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 88 DYIDFIQWDARELPLPDGSVDAIVTNPP---YGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp GGEEEEE--GGGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred CceEEEecchhhcccccCCCCEEEECcc---hhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 01 12357899999974 244444444446777788899999999943333
No 211
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=93.10 E-value=0.51 Score=45.63 Aligned_cols=16 Identities=13% Similarity=0.414 Sum_probs=14.4
Q ss_pred CEEEEEcccccccccc
Q 023158 43 KRVVDLCAAPGSWSQP 58 (286)
Q Consensus 43 ~~VLDLgaaPGswSq~ 58 (286)
.+||||+||.|.++..
T Consensus 208 ~~vLDl~~G~G~~sl~ 223 (362)
T PRK05031 208 GDLLELYCGNGNFTLA 223 (362)
T ss_pred CeEEEEeccccHHHHH
Confidence 5799999999999983
No 212
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=92.93 E-value=0.16 Score=49.68 Aligned_cols=80 Identities=23% Similarity=0.169 Sum_probs=49.1
Q ss_pred CCCEEEEEcccccccccccCCCCC-cEEEEeeCCChhhHHHHH-------------------HhcC-CCCccEEEeCCCC
Q 023158 41 GVKRVVDLCAAPGSWSQPMAPIEG-VIQVQGDITNARTAEVVI-------------------RHFD-GCKADLVVCDGAP 99 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~map~~g-v~~i~gDIt~~~~~~~i~-------------------~~l~-~~~~DlVlsDgap 99 (286)
++.+|||++||.|..+..++.-.+ ..++..|+..... +.+. ..+. ...||+|+.|- |
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av-~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~ 134 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAV-ELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F 134 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHH-HHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C
Confidence 356999999999999996643222 2455566654321 1111 1111 35699999994 3
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 100 DVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 100 ~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
|.. ...+..+.+.+++||.+.+.
T Consensus 135 ---Gs~-----------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 ---GSP-----------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ---CCc-----------HHHHHHHHHHhcCCCEEEEE
Confidence 321 23445566778999998876
No 213
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.60 E-value=0.36 Score=41.67 Aligned_cols=73 Identities=22% Similarity=0.201 Sum_probs=46.1
Q ss_pred HhCchhH---HHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCCCC--------------------------CcEEE
Q 023158 18 EEGWRAR---SAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIE--------------------------GVIQV 68 (286)
Q Consensus 18 ~~g~raR---sa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map~~--------------------------gv~~i 68 (286)
-|.|-.| +|.=|.-|++.|+-| .|+.++|||||.|-.+...+-.. ...++
T Consensus 23 LEQY~T~p~iAasM~~~Ih~Tygdi-Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlL 101 (185)
T KOG3420|consen 23 LEQYPTRPHIAASMLYTIHNTYGDI-EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLL 101 (185)
T ss_pred hhhCCCcHHHHHHHHHHHHhhhccc-cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhhee
Confidence 3445444 355566777777644 47899999999999885222111 13455
Q ss_pred EeeCCChhhHHHHHHhcCCCCccEEEeCCCC
Q 023158 69 QGDITNARTAEVVIRHFDGCKADLVVCDGAP 99 (286)
Q Consensus 69 ~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap 99 (286)
|+||+++. +.++.||.++-|-..
T Consensus 102 qcdildle--------~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 102 QCDILDLE--------LKGGIFDTAVINPPF 124 (185)
T ss_pred eeeccchh--------ccCCeEeeEEecCCC
Confidence 66666653 234678888888644
No 214
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=92.26 E-value=0.15 Score=44.91 Aligned_cols=87 Identities=20% Similarity=0.283 Sum_probs=46.5
Q ss_pred cCCCC-EEEEEcccccccccccCC-CCCcEEEEeeCCChhh--HHHHHHh----------------cCCCCccEEEeCCC
Q 023158 39 FEGVK-RVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNART--AEVVIRH----------------FDGCKADLVVCDGA 98 (286)
Q Consensus 39 ~~~g~-~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~--~~~i~~~----------------l~~~~~DlVlsDga 98 (286)
+.... +++|+|+|.|.=..+++- .|...+.-.|-....+ ++.+... .....||+|+|-+-
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAV 124 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESS
T ss_pred hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehh
Confidence 33333 899999998863332210 1233333333333221 1111111 12367999999863
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 99 PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 99 p~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
-. +...+..+..+|++||.+++ +.|..
T Consensus 125 ~~---------------l~~l~~~~~~~l~~~G~~l~--~KG~~ 151 (184)
T PF02527_consen 125 AP---------------LDKLLELARPLLKPGGRLLA--YKGPD 151 (184)
T ss_dssp SS---------------HHHHHHHHGGGEEEEEEEEE--EESS-
T ss_pred cC---------------HHHHHHHHHHhcCCCCEEEE--EcCCC
Confidence 21 23456788999999999884 34554
No 215
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=92.24 E-value=0.48 Score=43.13 Aligned_cols=99 Identities=9% Similarity=0.036 Sum_probs=59.0
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHH--------------hcCCCCccEEEeCCC-CCC---
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIR--------------HFDGCKADLVVCDGA-PDV--- 101 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~--------------~l~~~~~DlVlsDga-p~~--- 101 (286)
.++.+||+.|||.|--...++. .|..++..|+......+...+ ...+..++++++|.- ...
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~-~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLS-KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHh-CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 4568999999999987766664 477788888887644332111 112345677777752 110
Q ss_pred -CCCCcc--cHHHH----HHHHHHHHHHHHhcccCCcEEEEEEcc
Q 023158 102 -TGLHDM--DEFVQ----SQLILAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 102 -tG~~~~--D~~~~----~~L~~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
.|.-+. |.... -++=......+.++|+|||.+++-+|.
T Consensus 121 ~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 121 NLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred ccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 111111 21111 122244456678899999999988874
No 216
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=92.15 E-value=0.47 Score=35.57 Aligned_cols=96 Identities=21% Similarity=0.269 Sum_probs=50.9
Q ss_pred EEEEcccccccc--cccCCCCCcEEEEeeCCChhhHHHHHHhc--CCCC-ccEEEeCCCCCCCCCC---cccHHHHHHH-
Q 023158 45 VVDLCAAPGSWS--QPMAPIEGVIQVQGDITNARTAEVVIRHF--DGCK-ADLVVCDGAPDVTGLH---DMDEFVQSQL- 115 (286)
Q Consensus 45 VLDLgaaPGswS--q~map~~gv~~i~gDIt~~~~~~~i~~~l--~~~~-~DlVlsDgap~~tG~~---~~D~~~~~~L- 115 (286)
++|+|||+|.++ ....+ .+...+..|+....... ..... .... ++.+..|.......+. ..|.......
T Consensus 52 ~ld~~~g~g~~~~~~~~~~-~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGG-RGAYVVGVDLSPEMLAL-ARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCC-CCceEEEEeCCHHHHHH-HHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeeh
Confidence 999999999865 22222 12344446877653322 11111 1111 4666666432111111 1221111111
Q ss_pred ----HHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 116 ----ILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 116 ----~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
....+..+.++|+|+|.+++.......
T Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 367788889999999999988775443
No 217
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=92.05 E-value=0.28 Score=44.65 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=27.8
Q ss_pred CEEEEEcccccccccccCC-CCCcEEEEeeCCChhhH
Q 023158 43 KRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTA 78 (286)
Q Consensus 43 ~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~ 78 (286)
..+|++|||-|.|...||. -|...+|..++......
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~ 86 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVA 86 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHH
Confidence 5899999999999998765 25667777777766443
No 218
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=91.78 E-value=0.94 Score=42.73 Aligned_cols=94 Identities=11% Similarity=0.068 Sum_probs=57.3
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhcCCCCc-cEEEeCCCCCCCCCCccc---------H
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA-DLVVCDGAPDVTGLHDMD---------E 109 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l~~~~~-DlVlsDgap~~tG~~~~D---------~ 109 (286)
..+..++|.|||-|-..- +-|.+.++.+|++..-. .+.+ ...- .+.++|+.-...-...+| +
T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~--~~ak---~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihh 115 (293)
T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLL--GGAK---RSGGDNVCRADALKLPFREESFDAALSIAVIHH 115 (293)
T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhc--cccc---cCCCceeehhhhhcCCCCCCccccchhhhhhhh
Confidence 458899999999885442 23567788888887521 1111 1224 377777741111111122 2
Q ss_pred HHHHHHHHHHHHHHHhcccCCcEEEEEEccCC
Q 023158 110 FVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 141 (286)
Q Consensus 110 ~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~ 141 (286)
......=..++....++|||||...+-++...
T Consensus 116 lsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 116 LSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred hhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 22333447788999999999999888777543
No 219
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=91.69 E-value=0.67 Score=44.74 Aligned_cols=86 Identities=27% Similarity=0.240 Sum_probs=51.2
Q ss_pred HHHcCCcCCCCEEEEEcccccccccccC-C--------------------C-CCcEEEEeeCCChhhHHHHHHhcCCCCc
Q 023158 33 DEEFNIFEGVKRVVDLCAAPGSWSQPMA-P--------------------I-EGVIQVQGDITNARTAEVVIRHFDGCKA 90 (286)
Q Consensus 33 d~~f~l~~~g~~VLDLgaaPGswSq~ma-p--------------------~-~gv~~i~gDIt~~~~~~~i~~~l~~~~~ 90 (286)
.+.++=|+.....||+|+|.|.-+-.+. . + +||..+.||.... + -+.
T Consensus 169 l~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~-~----------P~~ 237 (342)
T KOG3178|consen 169 LEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQD-T----------PKG 237 (342)
T ss_pred hhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceeccccccc-C----------CCc
Confidence 3334336667999999999999876221 1 2 3344444444432 1 123
Q ss_pred cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 91 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 91 DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
|+|+.- +.=.|..|+- +.+.|+.+.+-|+|||.+|++-.
T Consensus 238 daI~mk----WiLhdwtDed-----cvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 238 DAIWMK----WILHDWTDED-----CVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CeEEEE----eecccCChHH-----HHHHHHHHHHhCCCCCEEEEEec
Confidence 444321 1111223432 57788999999999999998865
No 220
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.65 E-value=0.38 Score=44.02 Aligned_cols=82 Identities=18% Similarity=0.228 Sum_probs=49.1
Q ss_pred CCCEEEEEcccccccccccC--CCCCcEEEEeeCCChh--------------------------hHHHHHHhcCCCCccE
Q 023158 41 GVKRVVDLCAAPGSWSQPMA--PIEGVIQVQGDITNAR--------------------------TAEVVIRHFDGCKADL 92 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq~ma--p~~gv~~i~gDIt~~~--------------------------~~~~i~~~l~~~~~Dl 92 (286)
...++||||.-+|-=+..++ -.++-+++..||-... .+.+++...+.+.||+
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 56899999999997554221 1123333333333221 2333444444567888
Q ss_pred EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 93 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 93 VlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
|+-|. +-+.|. .-+..+.++||+||.+++-
T Consensus 153 aFvDa--------dK~nY~------~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFVDA--------DKDNYS------NYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEcc--------chHHHH------HHHHHHHhhcccccEEEEe
Confidence 88774 334442 4456788999999999864
No 221
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=91.11 E-value=2.5 Score=40.49 Aligned_cols=38 Identities=11% Similarity=0.016 Sum_probs=27.3
Q ss_pred cCCCCEEEEEccccccccc----ccCC-CCCcEEEEeeCCChh
Q 023158 39 FEGVKRVVDLCAAPGSWSQ----PMAP-IEGVIQVQGDITNAR 76 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq----~map-~~gv~~i~gDIt~~~ 76 (286)
+.++..+||||||.|..+. .+.+ -..++++..||+...
T Consensus 74 i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~ 116 (319)
T TIGR03439 74 IPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSE 116 (319)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHH
Confidence 4577899999999999876 2222 124778888888753
No 222
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=90.85 E-value=0.78 Score=46.43 Aligned_cols=39 Identities=13% Similarity=0.020 Sum_probs=28.6
Q ss_pred CCCCEEEEEcccccccccccCC-CCCcEEEEeeCCChhhH
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNARTA 78 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~~~~ 78 (286)
..+..+||+|||-|.|...++. .|...++..++......
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~ 385 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVA 385 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHH
Confidence 3577999999999999986654 25566777777765443
No 223
>PRK04148 hypothetical protein; Provisional
Probab=90.82 E-value=1.4 Score=37.08 Aligned_cols=93 Identities=16% Similarity=0.103 Sum_probs=57.0
Q ss_pred CCCEEEEEcccccc-cccccCCCCCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCC-CCCCCCCcccHH----HHHH
Q 023158 41 GVKRVVDLCAAPGS-WSQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA-PDVTGLHDMDEF----VQSQ 114 (286)
Q Consensus 41 ~g~~VLDLgaaPGs-wSq~map~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDga-p~~tG~~~~D~~----~~~~ 114 (286)
.+++|||+|||.|. .+..++. .|..++..|+.... .+.+.+ ...+.|.+|.. |+..=-.+.|-. --.+
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~-~G~~ViaIDi~~~a-V~~a~~----~~~~~v~dDlf~p~~~~y~~a~liysirpp~e 89 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKE-SGFDVIVIDINEKA-VEKAKK----LGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRD 89 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHH-CCCEEEEEECCHHH-HHHHHH----hCCeEEECcCCCCCHHHHhcCCEEEEeCCCHH
Confidence 46899999999995 7777764 47888888888763 333322 23677777753 211000000000 0125
Q ss_pred HHHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 115 LILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 115 L~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
|+...+++|.+ -|..++++.+.++.
T Consensus 90 l~~~~~~la~~---~~~~~~i~~l~~e~ 114 (134)
T PRK04148 90 LQPFILELAKK---INVPLIIKPLSGEE 114 (134)
T ss_pred HHHHHHHHHHH---cCCCEEEEcCCCCC
Confidence 56666777664 47789999998876
No 224
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=90.63 E-value=0.14 Score=47.81 Aligned_cols=110 Identities=17% Similarity=0.206 Sum_probs=53.8
Q ss_pred cCCCCEEEEEcccccccccccCC--------CCCcEEEEeeCCChhhH-HH---HHH------------------hc-CC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAP--------IEGVIQVQGDITNARTA-EV---VIR------------------HF-DG 87 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map--------~~gv~~i~gDIt~~~~~-~~---i~~------------------~l-~~ 87 (286)
.+++.+|+|-|||+|++...+.. .....+...|+...... .. +.. .. ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 35677999999999999763321 13445555566443211 00 000 00 12
Q ss_pred CCccEEEeCCCCCCCCCCc--c--cH--------HHHHHHHHHHHHHHHhcccCCcEEEEEE-----ccCCChHHHHHHH
Q 023158 88 CKADLVVCDGAPDVTGLHD--M--DE--------FVQSQLILAGLTVVTHVLKEGGKFIAKI-----FRGKDTSLLYCQL 150 (286)
Q Consensus 88 ~~~DlVlsDgap~~tG~~~--~--D~--------~~~~~L~~aaL~~a~~vLkpGG~fV~Ki-----f~g~~~~~l~~~l 150 (286)
.+||+|+++-.....+... . +. ....+ .+-+..+.+.|++||.+++=+ |.+.....++..|
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~~~~iR~~l 201 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAE--YAFIEHALSLLKPGGRAAIILPNGFLFSSSSEKKIRKYL 201 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHH--HHHHHHHHHTEEEEEEEEEEEEHHHHHGSTHHHHHHHHH
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchh--hhhHHHHHhhcccccceeEEecchhhhccchHHHHHHHH
Confidence 5799999996443221100 0 00 00111 224566789999999866544 2333345666544
No 225
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=90.51 E-value=3 Score=42.07 Aligned_cols=31 Identities=10% Similarity=0.012 Sum_probs=21.0
Q ss_pred HHHHhcccCCcEEEEEE----ccCCChHHHHHHHH
Q 023158 121 TVVTHVLKEGGKFIAKI----FRGKDTSLLYCQLK 151 (286)
Q Consensus 121 ~~a~~vLkpGG~fV~Ki----f~g~~~~~l~~~l~ 151 (286)
..+.++|++||.+.+=+ +.+.....++..+-
T Consensus 180 ~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll 214 (524)
T TIGR02987 180 EISLEIANKNGYVSIISPASWLGDKTGENLREYIF 214 (524)
T ss_pred HHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHH
Confidence 56889999999987544 34555556665543
No 226
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=90.39 E-value=0.55 Score=42.25 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=48.5
Q ss_pred CCEEEEEccccccccc------------------cc--C----------CC-CCcEEEEeeCCChhhHHHHHHhcCCCCc
Q 023158 42 VKRVVDLCAAPGSWSQ------------------PM--A----------PI-EGVIQVQGDITNARTAEVVIRHFDGCKA 90 (286)
Q Consensus 42 g~~VLDLgaaPGswSq------------------~m--a----------p~-~gv~~i~gDIt~~~~~~~i~~~l~~~~~ 90 (286)
...|+.+|.+-||=.. .+ . |+ +.+++++||.++++++..+.........
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 3699999999998332 01 0 11 5789999999999887766544434456
Q ss_pred cEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEE
Q 023158 91 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 91 DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~ 135 (286)
.+|+-|+. |..++ +.+.|+.-..++.+|+.+|+
T Consensus 113 vlVilDs~------H~~~h------vl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 113 VLVILDSS------HTHEH------VLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp EEEEESS----------SS------HHHHHHHHHHT--TT-EEEE
T ss_pred eEEEECCC------ccHHH------HHHHHHHhCccCCCCCEEEE
Confidence 79998874 33333 36677777889999999986
No 227
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.88 E-value=0.056 Score=48.94 Aligned_cols=97 Identities=16% Similarity=0.168 Sum_probs=50.4
Q ss_pred CcCCCCEEEEEcccccccccccCCC---CCcEEE----------------EeeCCChhhHHHHHHhcCCCCccEEEeCCC
Q 023158 38 IFEGVKRVVDLCAAPGSWSQPMAPI---EGVIQV----------------QGDITNARTAEVVIRHFDGCKADLVVCDGA 98 (286)
Q Consensus 38 l~~~g~~VLDLgaaPGswSq~map~---~gv~~i----------------~gDIt~~~~~~~i~~~l~~~~~DlVlsDga 98 (286)
.+++|-+.||+|.|+|-.|.-++.+ +|.... .-||+..+. ...|..+..-+|+.||-
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~----~~~~~~~~l~ivvGDgr 154 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSES----SSKLKRGELSIVVGDGR 154 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchh----hhhhccCceEEEeCCcc
Confidence 4689999999999999999844422 232111 122222211 22344455677777774
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 99 PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 99 p~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
--..-.+-.|....-.-.-.........|++||.+|+=+-
T Consensus 155 ~g~~e~a~YDaIhvGAaa~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 155 KGYAEQAPYDAIHVGAAASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred ccCCccCCcceEEEccCccccHHHHHHhhccCCeEEEeec
Confidence 3222111122110000001123455678999999987554
No 228
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=89.56 E-value=0.39 Score=42.86 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=25.2
Q ss_pred CcCCCCEEEEEcccccccccccCC-CCCcEEEEeeCCCh
Q 023158 38 IFEGVKRVVDLCAAPGSWSQPMAP-IEGVIQVQGDITNA 75 (286)
Q Consensus 38 l~~~g~~VLDLgaaPGswSq~map-~~gv~~i~gDIt~~ 75 (286)
+++++..|+|+.||=|.|+.+++. -.+..++..|+...
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~ 136 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPD 136 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HH
T ss_pred cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHH
Confidence 467899999999999999997764 24556777777643
No 229
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=89.31 E-value=1.7 Score=41.84 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=14.2
Q ss_pred CEEEEEcccccccccc
Q 023158 43 KRVVDLCAAPGSWSQP 58 (286)
Q Consensus 43 ~~VLDLgaaPGswSq~ 58 (286)
.+|||||||+|.++..
T Consensus 199 ~~vlDl~~G~G~~sl~ 214 (353)
T TIGR02143 199 GDLLELYCGNGNFSLA 214 (353)
T ss_pred CcEEEEeccccHHHHH
Confidence 4799999999999983
No 230
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=88.97 E-value=1 Score=40.64 Aligned_cols=35 Identities=20% Similarity=0.047 Sum_probs=21.2
Q ss_pred cCCCCEEEEEcccccccccccCCCCCcEEEEeeCCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITN 74 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~ 74 (286)
..++.+||..|||.|--...++. .|..++..|+..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~-~G~~VvGvDls~ 69 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAE-QGHDVVGVDLSP 69 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHH-TTEEEEEEES-H
T ss_pred CCCCCeEEEeCCCChHHHHHHHH-CCCeEEEEecCH
Confidence 35677999999999975553332 244444444444
No 231
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.37 E-value=0.47 Score=41.30 Aligned_cols=93 Identities=15% Similarity=0.120 Sum_probs=52.2
Q ss_pred EEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHH
Q 023158 44 RVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVV 123 (286)
Q Consensus 44 ~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a 123 (286)
-.|-+|||+=-|+-...+..-..--..|+..-+.. ...|+..++|+|++. |...|. ...-..++++++
T Consensus 5 ~kv~ig~G~~r~npgWi~~d~ed~~~vdlvc~As~---e~~F~dns~d~iyae--------HvlEHl-t~~Eg~~alkec 72 (185)
T COG4627 5 EKVKIGAGGKRVNPGWIITDVEDRPEVDLVCRASN---ESMFEDNSVDAIYAE--------HVLEHL-TYDEGTSALKEC 72 (185)
T ss_pred eEEEEeccccccCCCceeeehhcccccchhhhhhh---hccCCCcchHHHHHH--------HHHHHH-hHHHHHHHHHHH
Confidence 35678888765542111100000001344432221 234666778888764 222222 223346789999
Q ss_pred HhcccCCcEEEEEEccCCChHHHHH
Q 023158 124 THVLKEGGKFIAKIFRGKDTSLLYC 148 (286)
Q Consensus 124 ~~vLkpGG~fV~Kif~g~~~~~l~~ 148 (286)
.++|||||.+-|.+-.+.-...++.
T Consensus 73 hr~Lrp~G~LriAvPdl~f~~~~Y~ 97 (185)
T COG4627 73 HRFLRPGGKLRIAVPDLKFLDWLYQ 97 (185)
T ss_pred HHHhCcCcEEEEEcCCcchhHHHHh
Confidence 9999999999998877766555443
No 232
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=87.14 E-value=1.1 Score=41.08 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=18.2
Q ss_pred CCCCEEEEEcccccccccccC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMA 60 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~ma 60 (286)
.++..|||+|+|+|.||..+.
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~ 49 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELL 49 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHH
T ss_pred CCCCEEEEeCCCCccchhhHh
Confidence 378999999999999999553
No 233
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=86.47 E-value=2.1 Score=38.63 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=21.4
Q ss_pred cCCCCEEEEEcccccccccccCCCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIE 63 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~ 63 (286)
+++|++|+||=-|-|.|+.-+++.-
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~v 70 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAV 70 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhc
Confidence 4899999999999999999666643
No 234
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=86.31 E-value=1.3 Score=41.88 Aligned_cols=43 Identities=12% Similarity=-0.025 Sum_probs=27.8
Q ss_pred HHHHHcCCcCCCCEEEEEcccccccccccCCCC--CcEEEEeeCCC
Q 023158 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIE--GVIQVQGDITN 74 (286)
Q Consensus 31 eId~~f~l~~~g~~VLDLgaaPGswSq~map~~--gv~~i~gDIt~ 74 (286)
|+.+.+. .+++..+||++||.|+.|..+.... +..++..|...
T Consensus 10 Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~ 54 (296)
T PRK00050 10 EVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDP 54 (296)
T ss_pred HHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCH
Confidence 4444443 3678899999999999999554321 24455555543
No 235
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=85.86 E-value=0.95 Score=40.21 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=32.6
Q ss_pred cEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 65 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
|.|-+.|+.+... ..+.+|+|+|-- + =-|...+....++....+.|+|||.|++-
T Consensus 120 V~F~~~NL~~~~~--------~~~~fD~I~CRN---V------lIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 120 VRFRRHNLLDPDP--------PFGRFDLIFCRN---V------LIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp EEEEE--TT-S--------------EEEEEE-S---S------GGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred eEEEecccCCCCc--------ccCCccEEEecC---E------EEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 5677777777211 125899999953 2 23344456678889999999999999863
No 236
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=85.49 E-value=1.9 Score=40.19 Aligned_cols=60 Identities=20% Similarity=0.309 Sum_probs=37.6
Q ss_pred HHHHHcCCcCCCCEEEEEcccccccccccC------------------------CCCCcEEEEeeCCChhhHHHHHHhcC
Q 023158 31 QIDEEFNIFEGVKRVVDLCAAPGSWSQPMA------------------------PIEGVIQVQGDITNARTAEVVIRHFD 86 (286)
Q Consensus 31 eId~~f~l~~~g~~VLDLgaaPGswSq~ma------------------------p~~gv~~i~gDIt~~~~~~~i~~~l~ 86 (286)
.|-+.-++. ++..||++|+|.|+.|..+. +..+++++++|+......+ +
T Consensus 21 kIv~~a~~~-~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~-----l- 93 (259)
T COG0030 21 KIVEAANIS-PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS-----L- 93 (259)
T ss_pred HHHHhcCCC-CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh-----h-
Confidence 344444433 48899999999999998332 2345677777777653211 0
Q ss_pred CCCccEEEeCCC
Q 023158 87 GCKADLVVCDGA 98 (286)
Q Consensus 87 ~~~~DlVlsDga 98 (286)
...+.|+++..
T Consensus 94 -~~~~~vVaNlP 104 (259)
T COG0030 94 -AQPYKVVANLP 104 (259)
T ss_pred -cCCCEEEEcCC
Confidence 04677777763
No 237
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=83.66 E-value=1.2 Score=38.70 Aligned_cols=95 Identities=18% Similarity=0.203 Sum_probs=44.4
Q ss_pred CEEEEEcccccccccccCC-----------------------CCC----cEEEEeeCCChhhHHHHHHhcCCCC-ccEEE
Q 023158 43 KRVVDLCAAPGSWSQPMAP-----------------------IEG----VIQVQGDITNARTAEVVIRHFDGCK-ADLVV 94 (286)
Q Consensus 43 ~~VLDLgaaPGswSq~map-----------------------~~g----v~~i~gDIt~~~~~~~i~~~l~~~~-~DlVl 94 (286)
..|+|++||-||-+..++. +.| +.++.||+.+.. ..+.... +|+|+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~------~~~~~~~~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELL------KRLKSNKIFDVVF 74 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHG------GGB------SEEE
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHH------hhccccccccEEE
Confidence 3699999999997763221 223 567777776632 2222222 79999
Q ss_pred eCC---CCCCCCCCcc------cHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHH
Q 023158 95 CDG---APDVTGLHDM------DEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 150 (286)
Q Consensus 95 sDg---ap~~tG~~~~------D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l 150 (286)
.+- .|+....... ......+|+..+..++ .++++..=+..+..+|....
T Consensus 75 lSPPWGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t-------~nv~l~LPRn~dl~ql~~~~ 132 (163)
T PF09445_consen 75 LSPPWGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT-------PNVVLFLPRNSDLNQLSQLT 132 (163)
T ss_dssp E---BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH--------S-EEEEEETTB-HHHHHHT-
T ss_pred ECCCCCCccccccCccCHHHccCCCCHHHHHHHHHhhC-------CCEEEEeCCCCCHHHHHHHh
Confidence 873 2322222111 2222333433333332 35666666777777776554
No 238
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=83.57 E-value=1.8 Score=41.68 Aligned_cols=34 Identities=29% Similarity=0.347 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCcCCCCEEEEEcccccccccccC
Q 023158 26 AFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMA 60 (286)
Q Consensus 26 a~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~ma 60 (286)
+-+|++.--++==..++ .||||.||.|.+|.+++
T Consensus 182 ~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la 215 (352)
T PF05958_consen 182 NEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLA 215 (352)
T ss_dssp HHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHH
T ss_pred HHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHH
Confidence 34555443333112233 89999999999999544
No 239
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.93 E-value=1.4 Score=43.21 Aligned_cols=62 Identities=32% Similarity=0.515 Sum_probs=40.1
Q ss_pred CCCCEEEEEcccccccccccCC--------------------------CCC---cEEEEeeCCChhhHHHHHHhcCCCCc
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAP--------------------------IEG---VIQVQGDITNARTAEVVIRHFDGCKA 90 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map--------------------------~~g---v~~i~gDIt~~~~~~~i~~~l~~~~~ 90 (286)
.+|.+|+|.||+||--+..++. ..| +..+.+|++...+- ..+ +.+
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~----~~~--~~v 285 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATP----EKF--RDV 285 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCc----ccc--cce
Confidence 4578999999999998873321 122 23335666653221 122 457
Q ss_pred cEEEeCCCCCCCCCCcc
Q 023158 91 DLVVCDGAPDVTGLHDM 107 (286)
Q Consensus 91 DlVlsDgap~~tG~~~~ 107 (286)
..+|+|-++.-+|++.-
T Consensus 286 ~~iL~DpscSgSgm~~r 302 (413)
T KOG2360|consen 286 TYILVDPSCSGSGMVSR 302 (413)
T ss_pred eEEEeCCCCCCCccccc
Confidence 88999988888888663
No 240
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=82.74 E-value=2 Score=43.64 Aligned_cols=36 Identities=19% Similarity=0.299 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCcCCCCEEEEEccccccccccc
Q 023158 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPM 59 (286)
Q Consensus 24 Rsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~m 59 (286)
-+|-+|..+-.++-.+..+..+||+|||+|-++..+
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglal 401 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLAL 401 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhh
Confidence 456677777777777788899999999999998833
No 241
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=82.70 E-value=5.3 Score=37.81 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.6
Q ss_pred cCCCCEEEEEccccccccccc
Q 023158 39 FEGVKRVVDLCAAPGSWSQPM 59 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~m 59 (286)
++||.+|+.-|.|.||.|-.+
T Consensus 103 i~PGsvV~EsGTGSGSlShai 123 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAI 123 (314)
T ss_pred CCCCCEEEecCCCcchHHHHH
Confidence 479999999999999999843
No 242
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=82.27 E-value=2 Score=40.16 Aligned_cols=98 Identities=20% Similarity=0.199 Sum_probs=60.7
Q ss_pred HHHHHHhCchhHHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhcCCCCccE
Q 023158 13 YRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADL 92 (286)
Q Consensus 13 ~r~Ak~~g~raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l~~~~~Dl 92 (286)
..+|+.--|.+|...+-+...-.-+.|..+ +.|+|.-.=.-...|.|-+.|+.+... + .+.+|+
T Consensus 142 L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~--------~~~~y~v~~~ir~~V~F~~~NLl~~~~-------~-~~~fD~ 205 (268)
T COG1352 142 LEKARAGIYPSRELLRGLPPELLRRYFERG--------GDGSYRVKEELRKMVRFRRHNLLDDSP-------F-LGKFDL 205 (268)
T ss_pred HHHHhcCCCChhHhhccCCHHHHhhhEeec--------CCCcEEEChHHhcccEEeecCCCCCcc-------c-cCCCCE
Confidence 356777778878776665544443334322 112454322222468899999998742 1 257999
Q ss_pred EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEE
Q 023158 93 VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 93 VlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~ 135 (286)
|+|- |+ =-|...+....+++.-...|+|||.+++
T Consensus 206 IfCR---NV------LIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 206 IFCR---NV------LIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEEc---ce------EEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 9995 22 1122234456677888899999999986
No 243
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=81.49 E-value=0.56 Score=45.68 Aligned_cols=98 Identities=20% Similarity=0.158 Sum_probs=51.4
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHH----HHHHhcCCCCccEEEeCCCCC------CCCCCcccH
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAE----VVIRHFDGCKADLVVCDGAPD------VTGLHDMDE 109 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~----~i~~~l~~~~~DlVlsDgap~------~tG~~~~D~ 109 (286)
+++..++|++||=|+-+..++-..+...+-.|........ .+...+ ..+.+.|++|-.-. ..|.+.+|.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l-~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYL-DNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHh-hhhcceehhhhhcCCCCccccCcEEEEee
Confidence 5677899999999988886654433322222332221110 001111 12344455553210 111222221
Q ss_pred HHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 110 FVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 110 ~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
-.-++-...++.++.++|+|||.++++.|
T Consensus 188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~ 216 (364)
T KOG1269|consen 188 VCHAPDLEKVYAEIYRVLKPGGLFIVKEW 216 (364)
T ss_pred cccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence 11122246788999999999999998755
No 244
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=81.17 E-value=2 Score=38.96 Aligned_cols=84 Identities=23% Similarity=0.171 Sum_probs=46.2
Q ss_pred CCEEEEEccccccccccc-CCCCCcEEEEeeCCChh--hHHHHHHhcC--------------------CCCccEEEeCCC
Q 023158 42 VKRVVDLCAAPGSWSQPM-APIEGVIQVQGDITNAR--TAEVVIRHFD--------------------GCKADLVVCDGA 98 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~m-ap~~gv~~i~gDIt~~~--~~~~i~~~l~--------------------~~~~DlVlsDga 98 (286)
..++||.|||=|-.|..+ .|. +-..|+-++. -++.+.+.+. ..++|+|.+-
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~----f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~Q-- 129 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV----FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQ-- 129 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-----SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEE--
T ss_pred cceEEecccccchhHHHHHHHh----cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEeh--
Confidence 469999999999998733 332 2233433321 1122222221 2467777763
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 99 PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 99 p~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
+.=.|-.|+- +.+-|.-+...|+|||.+|+|--
T Consensus 130 --W~lghLTD~d-----lv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 130 --WCLGHLTDED-----LVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp --S-GGGS-HHH-----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --HhhccCCHHH-----HHHHHHHHHHhCcCCcEEEEEec
Confidence 3222222321 35567788999999999999964
No 245
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=81.02 E-value=20 Score=34.73 Aligned_cols=103 Identities=19% Similarity=0.198 Sum_probs=58.7
Q ss_pred cCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhcCC----CCccEEEeCCCCCCCCCCcccHHHH--
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHFDG----CKADLVVCDGAPDVTGLHDMDEFVQ-- 112 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l~~----~~~DlVlsDgap~~tG~~~~D~~~~-- 112 (286)
...|.+|||+=||=|-||.+++......++..||.-. ..+.+.+.+.- ..+..|..|..--+.-....|..+.
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~-A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPD-AVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHH-HHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 3579999999999999999988754455788888754 44444433211 1233444443210000011111000
Q ss_pred HHHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 113 SQLILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 113 ~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
......-+..|...|++||.+..-.|..++
T Consensus 265 p~~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 265 PKSAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred CCcchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 001134567788889999999887775443
No 246
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=80.10 E-value=3.2 Score=35.78 Aligned_cols=48 Identities=25% Similarity=0.256 Sum_probs=29.6
Q ss_pred ccEEEeCCCCCCCCCC---------cccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 90 ADLVVCDGAPDVTGLH---------DMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 90 ~DlVlsDgap~~tG~~---------~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
+|+|+.|- |...+.. ..+...-...+...+.++.++|||||.+++-+-
T Consensus 1 VdliitDP-PY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~ 57 (231)
T PF01555_consen 1 VDLIITDP-PYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFID 57 (231)
T ss_dssp EEEEEE----TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCEEEECC-CCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEec
Confidence 58888886 3333332 111222345578889999999999999987553
No 247
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=79.23 E-value=2.3 Score=40.11 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=27.4
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 88 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 88 ~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
+.+|+|+|--.. .|...+....++....+.|+|||.|++-
T Consensus 222 ~~fD~I~cRNvl---------iyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 222 GPFDAIFCRNVM---------IYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred CCcceeeHhhHH---------hcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 579999985311 1112234577888899999999998753
No 248
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=79.11 E-value=2.6 Score=32.59 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=35.0
Q ss_pred CcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEE
Q 023158 64 GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~ 135 (286)
.++++++|..+ .+.. +..+++|+|+-||.. .. +-....+..+...|+|||.+|+
T Consensus 50 ~~~~~~g~s~~--~l~~----~~~~~~dli~iDg~H------~~------~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 50 RVEFIQGDSPD--FLPS----LPDGPIDLIFIDGDH------SY------EAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp TEEEEES-THH--HHHH----HHH--EEEEEEES---------H------HHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEEEEEcCcHH--HHHH----cCCCCEEEEEECCCC------CH------HHHHHHHHHHHHHcCCCeEEEE
Confidence 57888888744 2222 224689999999842 11 3346678889999999999886
No 249
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=78.00 E-value=7.8 Score=37.88 Aligned_cols=79 Identities=20% Similarity=0.187 Sum_probs=48.6
Q ss_pred CCEEEEEcccccccccccCC-CCCc-EEEEeeCCChhhHHHHHHhc---------------------CCCCccEEEeCCC
Q 023158 42 VKRVVDLCAAPGSWSQPMAP-IEGV-IQVQGDITNARTAEVVIRHF---------------------DGCKADLVVCDGA 98 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map-~~gv-~~i~gDIt~~~~~~~i~~~l---------------------~~~~~DlVlsDga 98 (286)
+.+|||+.||+|..+..++. .+|+ .++..|+.... .+.+.+.+ .+.+||+|..|.
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~A-v~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKA-VESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHH-HHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 35899999999999986643 2343 34455665432 22221111 124699999985
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 99 PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 99 p~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
+ |.. ..-+..+.+.+++||.+.+.
T Consensus 123 f---Gs~-----------~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 F---GTP-----------APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C---CCc-----------HHHHHHHHHhcccCCEEEEE
Confidence 3 221 13456677888999988766
No 250
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=77.30 E-value=3.5 Score=39.00 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=18.7
Q ss_pred cCCCCEEEEEccccccccccc
Q 023158 39 FEGVKRVVDLCAAPGSWSQPM 59 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~m 59 (286)
++++..||.+|.|||..++.|
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~l 76 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKL 76 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHH
Confidence 578999999999999999943
No 251
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=77.04 E-value=3.3 Score=40.54 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=13.9
Q ss_pred HHHHHHhcccCCcEEEEEE
Q 023158 119 GLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~Ki 137 (286)
-++-...++.|||.||+--
T Consensus 207 ~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 207 NIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred HHHHHHHhccCCCeEEEEe
Confidence 3455567889999998754
No 252
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=76.49 E-value=4.7 Score=33.36 Aligned_cols=38 Identities=21% Similarity=0.159 Sum_probs=30.7
Q ss_pred cCCCCEEEEEcccccccccccCC-----CCCcEEEEeeCCChh
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAP-----IEGVIQVQGDITNAR 76 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map-----~~gv~~i~gDIt~~~ 76 (286)
-.+..+|+|+|||-|..++.++- .++..++..|.....
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~ 65 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESL 65 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHH
Confidence 35678999999999999996654 478888888887653
No 253
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=75.45 E-value=5.9 Score=39.48 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=25.9
Q ss_pred HHHHHHHHHHcCCcCCCCEEEEEcccccccccccCC
Q 023158 26 AFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAP 61 (286)
Q Consensus 26 a~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map 61 (286)
+-||++.-.++--..++.+||||=||-|.|+++++.
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~ 313 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAK 313 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcc
Confidence 345655444443235778999999999999997763
No 254
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.62 E-value=8.3 Score=37.30 Aligned_cols=87 Identities=16% Similarity=0.212 Sum_probs=48.4
Q ss_pred cCCCCEEEEEcccccc-----cccccC-----------------CCCCcEEEEeeCCC--h-hhHHHHHHhcCCCCccEE
Q 023158 39 FEGVKRVVDLCAAPGS-----WSQPMA-----------------PIEGVIQVQGDITN--A-RTAEVVIRHFDGCKADLV 93 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGs-----wSq~ma-----------------p~~gv~~i~gDIt~--~-~~~~~i~~~l~~~~~DlV 93 (286)
++.|.+||=+||||=+ |++.|- .--|++.+.-+-.. . ...+.+...++...+|++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 4678999999999955 444221 11233322211111 1 112233334433445555
Q ss_pred EeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 94 VCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 94 lsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
+ ++||. ...++.+...||.||++|+-.+..+.
T Consensus 247 ~-----dCsG~------------~~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 247 F-----DCSGA------------EVTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred E-----EccCc------------hHHHHHHHHHhccCCEEEEeccCCCc
Confidence 5 46664 33456778899999997776666554
No 255
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=73.49 E-value=2.9 Score=38.82 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=18.9
Q ss_pred HHHHHHHcCCcCCCCEEEEEcccccccc
Q 023158 29 LLQIDEEFNIFEGVKRVVDLCAAPGSWS 56 (286)
Q Consensus 29 L~eId~~f~l~~~g~~VLDLgaaPGswS 56 (286)
|-||..+..-|+| .+|||+|||||.-+
T Consensus 22 l~El~~r~p~f~P-~~vLD~GsGpGta~ 48 (274)
T PF09243_consen 22 LSELRKRLPDFRP-RSVLDFGSGPGTAL 48 (274)
T ss_pred HHHHHHhCcCCCC-ceEEEecCChHHHH
Confidence 4566666554555 48999999999743
No 256
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=73.11 E-value=6 Score=31.28 Aligned_cols=54 Identities=22% Similarity=0.301 Sum_probs=36.5
Q ss_pred eeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccC
Q 023158 70 GDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 140 (286)
Q Consensus 70 gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g 140 (286)
.|..+....+++.+...+..+|+|+ +++|. ...++.+..+|++||++++--+.+
T Consensus 39 ~~~~~~~~~~~i~~~~~~~~~d~vi-----d~~g~------------~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 39 IDYSDDDFVEQIRELTGGRGVDVVI-----DCVGS------------GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp EETTTSSHHHHHHHHTTTSSEEEEE-----ESSSS------------HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ccccccccccccccccccccceEEE-----EecCc------------HHHHHHHHHHhccCCEEEEEEccC
Confidence 3444444556666666656788887 34442 346778889999999999765554
No 257
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=72.50 E-value=19 Score=32.93 Aligned_cols=19 Identities=16% Similarity=0.302 Sum_probs=15.3
Q ss_pred HHHHHHhcccCCcEEEEEE
Q 023158 119 GLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~Ki 137 (286)
.+..+.+.|++||+||.--
T Consensus 245 ~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 245 TFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred HHHHHHHHhhcCCEEEEEC
Confidence 4567789999999999643
No 258
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=70.66 E-value=40 Score=31.01 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=35.7
Q ss_pred cEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCC----CCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccC
Q 023158 65 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA----PDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 140 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDga----p~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g 140 (286)
..+.+.||+++...... ..+...|+|+.|.. .+|.|. .+.+=+...|+....+| |++..|+-+-++
T Consensus 147 ~~~~~aDvf~~~~~~~~---~~~~~~diViTDlPYG~~t~W~g~------~~~~p~~~ml~~l~~vL-p~~sVV~v~~k~ 216 (246)
T PF11599_consen 147 HAIFRADVFDPSPLAVL---DAGFTPDIVITDLPYGEMTSWQGE------GSGGPVAQMLNSLAPVL-PERSVVAVSDKG 216 (246)
T ss_dssp EEEEE--TT-HHHHHHH---HTT---SEEEEE--CCCSSSTTS---------HHHHHHHHHHHHCCS--TT-EEEEEESS
T ss_pred hhheeecccCCchhhhh---ccCCCCCEEEecCCCcccccccCC------CCCCcHHHHHHHHHhhC-CCCcEEEEecCC
Confidence 45678899998765444 22345799999974 233332 23334566778888899 666666556666
Q ss_pred CCh
Q 023158 141 KDT 143 (286)
Q Consensus 141 ~~~ 143 (286)
...
T Consensus 217 ~Ki 219 (246)
T PF11599_consen 217 RKI 219 (246)
T ss_dssp SS-
T ss_pred ccc
Confidence 543
No 259
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=69.79 E-value=14 Score=34.90 Aligned_cols=18 Identities=6% Similarity=-0.066 Sum_probs=14.0
Q ss_pred HHHHHHhcccCCcEEEEE
Q 023158 119 GLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~K 136 (286)
++..+...|++||++|+-
T Consensus 258 ~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 258 TYKQAFYARDLAGTVVLV 275 (358)
T ss_pred HHHHHHHHhccCCEEEEE
Confidence 455677899999999864
No 260
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=69.42 E-value=4.7 Score=34.14 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=33.4
Q ss_pred CCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 88 CKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 88 ~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
+++|+|+-+..---.|.+.+- ...+-...|+..++++|+|||.+++-++.|.+
T Consensus 45 ~~v~~~iFNLGYLPggDk~i~--T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 45 GPVDAAIFNLGYLPGGDKSIT--TKPETTLKALEAALELLKPGGIITIVVYPGHP 97 (140)
T ss_dssp --EEEEEEEESB-CTS-TTSB----HHHHHHHHHHHHHHEEEEEEEEEEE--STC
T ss_pred CCcCEEEEECCcCCCCCCCCC--cCcHHHHHHHHHHHHhhccCCEEEEEEeCCCC
Confidence 478888887542112444432 22344578999999999999999999998775
No 261
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=68.85 E-value=19 Score=35.28 Aligned_cols=92 Identities=22% Similarity=0.277 Sum_probs=61.3
Q ss_pred cCCCCEEEEEcccccccccccCCC------------------------------CC-----cEEEEeeCCChhhHHHHHH
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPI------------------------------EG-----VIQVQGDITNARTAEVVIR 83 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~------------------------------~g-----v~~i~gDIt~~~~~~~i~~ 83 (286)
.++|+-|.|==.|+||+.-..+.. .| +.++.+|.+++... +
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r----s 281 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR----S 281 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh----h
Confidence 478999999999999988733221 01 23456666665432 1
Q ss_pred hcCCCCccEEEeCCCCC--------------------CCCC--CcccHHHHHHHHHHHHHHHHhcccCCcEEEEEE
Q 023158 84 HFDGCKADLVVCDGAPD--------------------VTGL--HDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 84 ~l~~~~~DlVlsDgap~--------------------~tG~--~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki 137 (286)
...||.|+||-.=. .++. ....+|....++...|..+.++|.-||.+|+-+
T Consensus 282 ---n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 282 ---NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred ---cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 24799999996310 0111 112345666778888999999999999999744
No 262
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=67.95 E-value=0.91 Score=36.95 Aligned_cols=58 Identities=12% Similarity=0.295 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcccCCcEEEEEE-----ccCCChHHHHHHHHhcCCeeEeeCCCCCCCCchhhhhhh--cCCCC
Q 023158 116 ILAGLTVVTHVLKEGGKFIAKI-----FRGKDTSLLYCQLKLFFPVVTFAKPKSSRNSSIEAFAVC--ENYFP 181 (286)
Q Consensus 116 ~~aaL~~a~~vLkpGG~fV~Ki-----f~g~~~~~l~~~l~~~F~~V~~~KP~sSR~~S~E~yvVc--~gf~~ 181 (286)
+...+.-+...|+|||.||+.- ++... .+...+...|+.+.+ +| ..-+.|+.- .||..
T Consensus 23 l~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~--~~~~~~~~n~~~i~l-rP-----~~F~~~L~~~evGF~~ 87 (110)
T PF06859_consen 23 LKRFFRRIYSLLRPGGILILEPQPWKSYKKAK--RLSEEIRENYKSIKL-RP-----DQFEDYLLEPEVGFSS 87 (110)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE---HHHHHTTT--TS-HHHHHHHHH-----G-----GGHHHHHTSTTT---E
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHh--hhhHHHHhHHhceEE-Ch-----HHHHHHHHhcccceEE
Confidence 3556778889999999999864 21110 111223334555654 34 346666666 36653
No 263
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=67.36 E-value=18 Score=33.97 Aligned_cols=19 Identities=37% Similarity=0.732 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcccCCcEEE
Q 023158 116 ILAGLTVVTHVLKEGGKFI 134 (286)
Q Consensus 116 ~~aaL~~a~~vLkpGG~fV 134 (286)
+..-+..+.++|||||..|
T Consensus 181 i~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 181 IIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred HHHHHHHHHHHhccCCEEE
Confidence 3556778889999999877
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=65.31 E-value=19 Score=33.40 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=37.1
Q ss_pred HHcCCcCCCCEEEEEcccccccccc-cCCCCCcEEEEeeCCChhh--HHHHHHhcCCCCccEEEeCCC
Q 023158 34 EEFNIFEGVKRVVDLCAAPGSWSQP-MAPIEGVIQVQGDITNART--AEVVIRHFDGCKADLVVCDGA 98 (286)
Q Consensus 34 ~~f~l~~~g~~VLDLgaaPGswSq~-map~~gv~~i~gDIt~~~~--~~~i~~~l~~~~~DlVlsDga 98 (286)
+.|..+.+..+|+|||||-==++.+ |...++++++..||-.... +..+...++ -..+..++|-.
T Consensus 98 ~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~-~~~~~~v~Dl~ 164 (251)
T PF07091_consen 98 EIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG-VPHDARVRDLL 164 (251)
T ss_dssp HHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TT
T ss_pred HHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC-CCcceeEeeee
Confidence 3455556688999999996555553 3333578999999987532 233334443 46888888864
No 265
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=63.64 E-value=27 Score=33.41 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=15.3
Q ss_pred HHHHHHHhcccCCcEEEEE
Q 023158 118 AGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 118 aaL~~a~~vLkpGG~fV~K 136 (286)
.++..+.+.|++||++|.-
T Consensus 287 ~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 287 DALREAIQAVRKGGTVSII 305 (386)
T ss_pred HHHHHHHHHhccCCEEEEE
Confidence 3567778899999999864
No 266
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=62.73 E-value=22 Score=31.45 Aligned_cols=68 Identities=9% Similarity=0.140 Sum_probs=40.5
Q ss_pred cEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHH--HHHHHHHHhcccCCcEEEE
Q 023158 65 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLI--LAGLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~--~aaL~~a~~vLkpGG~fV~ 135 (286)
..++++|+++.+..+.+.+.+. +++|.|++..+.. +....+......+. ...+..+...++++|.+|.
T Consensus 25 ~~~~~~Dl~~~~~v~~~~~~~~-~~iD~li~nAG~~--~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~ 94 (241)
T PRK12428 25 DGFIQADLGDPASIDAAVAALP-GRIDALFNIAGVP--GTAPVELVARVNFLGLRHLTEALLPRMAPGGAIVN 94 (241)
T ss_pred hHhhcccCCCHHHHHHHHHHhc-CCCeEEEECCCCC--CCCCHHHhhhhchHHHHHHHHHHHHhccCCcEEEE
Confidence 3567899999887776666554 4799999987532 22233332222222 2233444556667788774
No 267
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=62.45 E-value=35 Score=29.34 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=45.6
Q ss_pred EeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCC-CCCcccHH--HHHHHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 69 QGDITNARTAEVVIRHFDGCKADLVVCDGAPDVT-GLHDMDEF--VQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 69 ~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~t-G~~~~D~~--~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
..|.|+..... .+...+||.|+=+- |.+. |..+.+.. ...+|+..-+..|.++|+++|.+.+.+.++..
T Consensus 59 ~VDat~l~~~~----~~~~~~FDrIiFNF-PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 59 GVDATKLHKHF----RLKNQRFDRIIFNF-PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred CCCCCcccccc----cccCCcCCEEEEeC-CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 34666653211 12457899999987 4332 22222221 33577888889999999999999999998754
No 268
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=62.37 E-value=44 Score=31.32 Aligned_cols=82 Identities=13% Similarity=0.071 Sum_probs=40.4
Q ss_pred cEEEEeeCCChhhHH---HHHHhcC-CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccC
Q 023158 65 VIQVQGDITNARTAE---VVIRHFD-GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 140 (286)
Q Consensus 65 v~~i~gDIt~~~~~~---~i~~~l~-~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g 140 (286)
..++++|++++..+= ++...++ ++++=+++...-.-+ .+.+. ...++..-...|.||..+++..+..
T Consensus 123 t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v---~D~~d------p~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 123 TAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFV---PDDDD------PAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp EEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS----CGCT------HHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred EEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccC---CCccC------HHHHHHHHHHhCCCCceEEEEecCC
Confidence 779999999987541 2222222 245555554432111 11111 2456667778999999999999987
Q ss_pred CChHHHHHHHHhcCC
Q 023158 141 KDTSLLYCQLKLFFP 155 (286)
Q Consensus 141 ~~~~~l~~~l~~~F~ 155 (286)
....+-...+...|.
T Consensus 194 d~~p~~~~~~~~~~~ 208 (267)
T PF04672_consen 194 DGAPERAEALEAVYA 208 (267)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 754444344444443
No 269
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=62.03 E-value=28 Score=35.54 Aligned_cols=48 Identities=21% Similarity=0.281 Sum_probs=34.7
Q ss_pred CCCCCchHHHHHHHhCchhHHHHHHHHHHHHcCC-c---------CCCCEEEEEccccccccc
Q 023158 5 SRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNI-F---------EGVKRVVDLCAAPGSWSQ 57 (286)
Q Consensus 5 ~~~~rD~y~r~Ak~~g~raRsa~KL~eId~~f~l-~---------~~g~~VLDLgaaPGswSq 57 (286)
..++-|.....|.-.|||+ .++.-+.|.- + .++.+|+=+||||=|...
T Consensus 123 raq~~d~lssma~IAGy~A-----v~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~A 180 (509)
T PRK09424 123 RAQSLDALSSMANIAGYRA-----VIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAA 180 (509)
T ss_pred cCCCcccccchhhhhHHHH-----HHHHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHH
Confidence 3477889989999999877 3444344432 1 368899999999977654
No 270
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=61.91 E-value=7.1 Score=36.82 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=19.7
Q ss_pred HHHHHHc--CCcCCCCEEEEEccccccccc
Q 023158 30 LQIDEEF--NIFEGVKRVVDLCAAPGSWSQ 57 (286)
Q Consensus 30 ~eId~~f--~l~~~g~~VLDLgaaPGswSq 57 (286)
-.|-+++ ++.-.+++|||||||+|=-..
T Consensus 103 ~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i 132 (282)
T KOG2920|consen 103 PYLKEEIGAQMSFSGKRVLELGCGAALPGI 132 (282)
T ss_pred HHHHHHhhhheEecCceeEecCCcccccch
Confidence 3444555 556789999999999884433
No 271
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=58.99 E-value=18 Score=34.55 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHH
Q 023158 114 QLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 148 (286)
Q Consensus 114 ~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~ 148 (286)
.-+..+|..|..+|+|||.+++=.|.+-+-..+.+
T Consensus 221 ~~L~~~L~~a~~~L~~gGRl~VIsFHSLEDRiVK~ 255 (314)
T COG0275 221 EELEEALEAALDLLKPGGRLAVISFHSLEDRIVKN 255 (314)
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEEecchHHHHHHH
Confidence 34577888999999999999999998866544434
No 272
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=58.50 E-value=62 Score=28.01 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=21.7
Q ss_pred HcCCcCCCCEEEEEcccc-cccccccCCCCCcEEEEeeC
Q 023158 35 EFNIFEGVKRVVDLCAAP-GSWSQPMAPIEGVIQVQGDI 72 (286)
Q Consensus 35 ~f~l~~~g~~VLDLgaaP-GswSq~map~~gv~~i~gDI 72 (286)
+...++++.+||-.|+|+ |.....++...|..++..+.
T Consensus 128 ~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~ 166 (271)
T cd05188 128 RAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDR 166 (271)
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcC
Confidence 445557899999999876 33332333334444444433
No 273
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=58.48 E-value=36 Score=31.40 Aligned_cols=17 Identities=12% Similarity=0.456 Sum_probs=13.6
Q ss_pred HHHHHHhcccCCcEEEE
Q 023158 119 GLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~ 135 (286)
.+..+.+.|+++|+++.
T Consensus 240 ~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 240 SMEEAVELVAHGGRVVL 256 (337)
T ss_pred HHHHHHHHHhcCCEEEE
Confidence 35667889999999985
No 274
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.37 E-value=28 Score=30.77 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=33.8
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEE-ccCCChHHHHHHHHhc
Q 023158 87 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKI-FRGKDTSLLYCQLKLF 153 (286)
Q Consensus 87 ~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Ki-f~g~~~~~l~~~l~~~ 153 (286)
..+||+|+|- |+. -+|++ -.+....+..+|+|-|..++-. -+|...+.+.......
T Consensus 101 q~tFDiIlaA---DCl---FfdE~-----h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~de~~~~ 157 (201)
T KOG3201|consen 101 QHTFDIILAA---DCL---FFDEH-----HESLVDTIKSLLRPSGRALLFSPRRGQSLQKFLDEVGTV 157 (201)
T ss_pred hCcccEEEec---cch---hHHHH-----HHHHHHHHHHHhCcccceeEecCcccchHHHHHHHHHhc
Confidence 3589999974 222 13444 2344566788999999854322 2566666666655543
No 275
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=57.41 E-value=51 Score=30.02 Aligned_cols=122 Identities=14% Similarity=0.067 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCcC----CCCEEEEEccccccccc-----------ccCCCCCcEEEEeeCCChhhHHHHHHhcCCCC
Q 023158 25 SAFKLLQIDEEFNIFE----GVKRVVDLCAAPGSWSQ-----------PMAPIEGVIQVQGDITNARTAEVVIRHFDGCK 89 (286)
Q Consensus 25 sa~KL~eId~~f~l~~----~g~~VLDLgaaPGswSq-----------~map~~gv~~i~gDIt~~~~~~~i~~~l~~~~ 89 (286)
|.=.|++-..+...-. ...++||+||=...-.. .+.+ ..-.+++.|+.+-... ..+.++
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns-~~~~I~qqDFm~rplp-----~~~~e~ 104 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNS-QHPGILQQDFMERPLP-----KNESEK 104 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCC-CCCCceeeccccCCCC-----CCcccc
Confidence 4444444444443222 23699999987332111 1111 1122467777764321 113468
Q ss_pred ccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcE-----EEEEEc-----cCC--ChHHHHHHHHhc-CCe
Q 023158 90 ADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGK-----FIAKIF-----RGK--DTSLLYCQLKLF-FPV 156 (286)
Q Consensus 90 ~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~-----fV~Kif-----~g~--~~~~l~~~l~~~-F~~ 156 (286)
||+|.+-.-.+.-+ +.. .=-..+.-+.++|+|+|. +.+-+= .+. +...+...|... |..
T Consensus 105 FdvIs~SLVLNfVP----~p~----~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~ 176 (219)
T PF11968_consen 105 FDVISLSLVLNFVP----DPK----QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGFTR 176 (219)
T ss_pred eeEEEEEEEEeeCC----CHH----HHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCcEE
Confidence 99998876433221 111 113456788999999998 432221 111 344555555553 877
Q ss_pred eEee
Q 023158 157 VTFA 160 (286)
Q Consensus 157 V~~~ 160 (286)
++..
T Consensus 177 ~~~~ 180 (219)
T PF11968_consen 177 VKYK 180 (219)
T ss_pred EEEE
Confidence 7763
No 276
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=56.90 E-value=48 Score=31.01 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=50.6
Q ss_pred hHHHHHHHhCc----hhHHHHHHHHHHHHcCCcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCChhhHHHHHHhcC
Q 023158 11 IYYRKAKEEGW----RARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITNARTAEVVIRHFD 86 (286)
Q Consensus 11 ~y~r~Ak~~g~----raRsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~~~~~~~i~~~l~ 86 (286)
.|.++-.++|+ .+|+.-||.+|.++.. .. . --.|.++..|+++++.+.++...+.
T Consensus 21 ~~A~~lA~~g~~liLvaR~~~kL~~la~~l~---~~-----------------~-~v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 21 ELAKQLARRGYNLILVARREDKLEALAKELE---DK-----------------T-GVEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred HHHHHHHHCCCEEEEEeCcHHHHHHHHHHHH---Hh-----------------h-CceEEEEECcCCChhHHHHHHHHHH
Confidence 34555555665 7899999999888763 10 0 0136789999999998888776654
Q ss_pred C--CCccEEEeCCCCCCCC
Q 023158 87 G--CKADLVVCDGAPDVTG 103 (286)
Q Consensus 87 ~--~~~DlVlsDgap~~tG 103 (286)
. ..+|+.+-+......|
T Consensus 80 ~~~~~IdvLVNNAG~g~~g 98 (265)
T COG0300 80 ERGGPIDVLVNNAGFGTFG 98 (265)
T ss_pred hcCCcccEEEECCCcCCcc
Confidence 4 3799999987665554
No 277
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=56.88 E-value=46 Score=35.16 Aligned_cols=31 Identities=13% Similarity=0.026 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCcCCCCEEEEEccccccccc
Q 023158 24 RSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ 57 (286)
Q Consensus 24 Rsa~KL~eId~~f~l~~~g~~VLDLgaaPGswSq 57 (286)
--|.-|+. .-++.+++..++|-+||.|.+..
T Consensus 176 tlAaa~l~---~a~w~~~~~~l~DP~CGSGTilI 206 (702)
T PRK11783 176 NLAAAILL---RSGWPQEGTPLLDPMCGSGTLLI 206 (702)
T ss_pred HHHHHHHH---HcCCCCCCCeEEccCCCccHHHH
Confidence 34455553 23344678899999999999887
No 278
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=56.44 E-value=66 Score=32.65 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=56.1
Q ss_pred cCCCC-EEEEEcccccccccccC--------------------------CCCCcEEEEeeCCChhhHHHHHHhcCCCCcc
Q 023158 39 FEGVK-RVVDLCAAPGSWSQPMA--------------------------PIEGVIQVQGDITNARTAEVVIRHFDGCKAD 91 (286)
Q Consensus 39 ~~~g~-~VLDLgaaPGswSq~ma--------------------------p~~gv~~i~gDIt~~~~~~~i~~~l~~~~~D 91 (286)
+++-. +++=||||-=-.+..+- ..+...+...|++.. .|+.+.||
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l--------~fedESFd 116 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQL--------VFEDESFD 116 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecchhc--------cCCCccee
Confidence 35555 99999999655544211 112234445555553 25668899
Q ss_pred EEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 92 LVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 92 lVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
+|+-=|..|.+=-...+.+ .......-+....++|++||+++.-++
T Consensus 117 iVIdkGtlDal~~de~a~~-~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 117 IVIDKGTLDALFEDEDALL-NTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred EEEecCccccccCCchhhh-hhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 9998887665422222222 124456667888999999999876555
No 279
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=54.65 E-value=8.6 Score=35.61 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=44.3
Q ss_pred CEEEEEcccccccccccCC----------------------CCCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCC
Q 023158 43 KRVVDLCAAPGSWSQPMAP----------------------IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPD 100 (286)
Q Consensus 43 ~~VLDLgaaPGswSq~map----------------------~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~ 100 (286)
.+|+||+||.|+.+..+.. .++ ..+.+||.+.... .+ ...+|+|+.+-.+
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~-----~~-~~~~D~l~~gpPC- 72 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-KLIEGDITKIDEK-----DF-IPDIDLLTGGFPC- 72 (275)
T ss_pred CcEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-CCccCccccCchh-----hc-CCCCCEEEeCCCC-
Confidence 3799999999999883221 122 2456677665321 11 2469999987543
Q ss_pred CCCCC------c-ccHHHHHHHHHHHHHHHHhcccCCcEEEE
Q 023158 101 VTGLH------D-MDEFVQSQLILAGLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 101 ~tG~~------~-~D~~~~~~L~~aaL~~a~~vLkpGG~fV~ 135 (286)
+|.. . .|. ...|....+.++. .++|- .||+
T Consensus 73 -q~fS~ag~~~~~~d~--r~~L~~~~~~~i~-~~~P~-~~v~ 109 (275)
T cd00315 73 -QPFSIAGKRKGFEDT--RGTLFFEIIRILK-EKKPK-YFLL 109 (275)
T ss_pred -hhhhHHhhcCCCCCc--hHHHHHHHHHHHH-hcCCC-EEEE
Confidence 2221 1 122 2346666665544 45776 4443
No 280
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=53.09 E-value=55 Score=30.07 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=13.8
Q ss_pred HHHHHHhcccCCcEEEE
Q 023158 119 GLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~ 135 (286)
.+..+.+.|+++|+|+.
T Consensus 249 ~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 249 TFEQAVKVVRPGGTIAN 265 (347)
T ss_pred HHHHHHHHhhcCCEEEE
Confidence 45667789999999884
No 281
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=52.74 E-value=41 Score=31.83 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=14.4
Q ss_pred HHHHHHhcccCCcEEEEE
Q 023158 119 GLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~K 136 (286)
.+..+.+.|++||++|+-
T Consensus 272 ~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 272 ALETAYEITRRGGTTVTA 289 (371)
T ss_pred HHHHHHHHHhcCCEEEEE
Confidence 456778899999999864
No 282
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=52.71 E-value=14 Score=34.42 Aligned_cols=48 Identities=19% Similarity=0.074 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCcCCCCEEEEEcccccccccccCC------CCCcEEEEeeCCCh
Q 023158 28 KLLQIDEEFNIFEGVKRVVDLCAAPGSWSQPMAP------IEGVIQVQGDITNA 75 (286)
Q Consensus 28 KL~eId~~f~l~~~g~~VLDLgaaPGswSq~map------~~gv~~i~gDIt~~ 75 (286)
.|++..++.+++.+...+|++|||-|..|..++- .+...++-.|-...
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 4888999999999999999999999998884321 13455666665543
No 283
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=52.59 E-value=8.5 Score=35.25 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.7
Q ss_pred CCEEEEEcccccccccccCCC
Q 023158 42 VKRVVDLCAAPGSWSQPMAPI 62 (286)
Q Consensus 42 g~~VLDLgaaPGswSq~map~ 62 (286)
..++||||||-|..+..|+|.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~ 133 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPT 133 (288)
T ss_pred CeeEEeccCCCcchhhhhcch
Confidence 369999999999999999873
No 284
>PRK08177 short chain dehydrogenase; Provisional
Probab=51.61 E-value=73 Score=27.53 Aligned_cols=37 Identities=16% Similarity=0.384 Sum_probs=29.3
Q ss_pred CCCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCC
Q 023158 62 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 98 (286)
Q Consensus 62 ~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDga 98 (286)
..++.++.+|+++.+..+.+.+.+.++++|.|++...
T Consensus 44 ~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag 80 (225)
T PRK08177 44 LPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG 80 (225)
T ss_pred ccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence 3467888999999888777777776568999998754
No 285
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=51.45 E-value=23 Score=33.74 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcccCCcEEEEEEccCCChHHHHH
Q 023158 116 ILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYC 148 (286)
Q Consensus 116 ~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~ 148 (286)
+..+|..+..+|+|||.+++=.|.+-+-..+..
T Consensus 219 L~~~L~~~~~~L~~gGrl~VISfHSLEDRiVK~ 251 (305)
T TIGR00006 219 LEEALQFAPNLLAPGGRLSIISFHSLEDRIVKN 251 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHH
Confidence 455677788999999999999998765444433
No 286
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=51.32 E-value=16 Score=29.84 Aligned_cols=34 Identities=21% Similarity=0.121 Sum_probs=20.2
Q ss_pred CCCCEEEEEcccccccccccCCCCCcEEEEeeCCC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITN 74 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~ 74 (286)
++-...+|||||.|=..--+. .+|..-.-.|+..
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~-~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILN-SEGYPGWGIDARR 90 (112)
T ss_pred CCCCceEEccCCchHHHHHHH-hCCCCcccccccc
Confidence 456789999999996554222 1233333445554
No 287
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=49.38 E-value=46 Score=29.52 Aligned_cols=57 Identities=26% Similarity=0.261 Sum_probs=32.4
Q ss_pred HHHHHhcCCCCccEEEeCCCCCCCCCCc-ccHHHHHHH------HHHH--HHHHHhcccCCcEEEE
Q 023158 79 EVVIRHFDGCKADLVVCDGAPDVTGLHD-MDEFVQSQL------ILAG--LTVVTHVLKEGGKFIA 135 (286)
Q Consensus 79 ~~i~~~l~~~~~DlVlsDgap~~tG~~~-~D~~~~~~L------~~aa--L~~a~~vLkpGG~fV~ 135 (286)
+++-+.+.++++|-|+|-..--.-|... .|-.....| .-++ -.+|..+|||||.+-+
T Consensus 62 ~~vg~sL~gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~L 127 (236)
T KOG4022|consen 62 EQVGSSLQGEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQL 127 (236)
T ss_pred HHHHHhhcccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeee
Confidence 4455677889999999965322222221 121111111 1222 3567899999998864
No 288
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.01 E-value=49 Score=30.64 Aligned_cols=90 Identities=20% Similarity=0.219 Sum_probs=56.6
Q ss_pred CCCEEEEEccccccccc---------------------ccCCC---CCcEEEEeeCCChhhHHHHHH---hcCCCCccEE
Q 023158 41 GVKRVVDLCAAPGSWSQ---------------------PMAPI---EGVIQVQGDITNARTAEVVIR---HFDGCKADLV 93 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq---------------------~map~---~gv~~i~gDIt~~~~~~~i~~---~l~~~~~DlV 93 (286)
....||=.||+.||.-- +|+.+ .|......|+++++....+.. .+..++.|+.
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L 85 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL 85 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence 34578889999999644 33333 377888999999876544432 2355789999
Q ss_pred EeCCCCCCCCCCcccH-------------HHHHHHHHHHHHHHHhcccCCcEEE
Q 023158 94 VCDGAPDVTGLHDMDE-------------FVQSQLILAGLTVVTHVLKEGGKFI 134 (286)
Q Consensus 94 lsDgap~~tG~~~~D~-------------~~~~~L~~aaL~~a~~vLkpGG~fV 134 (286)
+-++...|++- ..|. +..+.++.+. ...+.|..|++|
T Consensus 86 ~NNAG~~C~~P-a~d~~i~ave~~f~vNvfG~irM~~a~---~h~likaKGtIV 135 (289)
T KOG1209|consen 86 YNNAGQSCTFP-ALDATIAAVEQCFKVNVFGHIRMCRAL---SHFLIKAKGTIV 135 (289)
T ss_pred EcCCCCCcccc-cccCCHHHHHhhhccceeeeehHHHHH---HHHHHHccceEE
Confidence 99876656542 1111 1122333222 256778889887
No 289
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=47.63 E-value=29 Score=32.89 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHH
Q 023158 115 LILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQL 150 (286)
Q Consensus 115 L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l 150 (286)
-+...|..+..+|+|||.+++=.|.+-+...+...+
T Consensus 214 ~L~~~L~~~~~~L~~gGrl~visfHSlEDriVK~~f 249 (296)
T PRK00050 214 ELERALEAALDLLKPGGRLAVISFHSLEDRIVKRFF 249 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHH
Confidence 346677888999999999999999876544444433
No 290
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=46.51 E-value=17 Score=36.03 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=27.7
Q ss_pred CcCCCCEEEEEcccccccccccCCCCCcEEEEeeCCC
Q 023158 38 IFEGVKRVVDLCAAPGSWSQPMAPIEGVIQVQGDITN 74 (286)
Q Consensus 38 l~~~g~~VLDLgaaPGswSq~map~~gv~~i~gDIt~ 74 (286)
.+-+-..|+|+|+|+|..|+-|.--.|..+...|-.+
T Consensus 150 ~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq 186 (476)
T KOG2651|consen 150 DFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ 186 (476)
T ss_pred hhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence 3456789999999999999988765675555555444
No 291
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=45.41 E-value=91 Score=29.75 Aligned_cols=86 Identities=21% Similarity=0.264 Sum_probs=49.6
Q ss_pred CCCCEEEEEccccccccc-ccCCCCC-cEEEEeeCCChhhH--------------------HHHHHhcCCCCccEEEeCC
Q 023158 40 EGVKRVVDLCAAPGSWSQ-PMAPIEG-VIQVQGDITNARTA--------------------EVVIRHFDGCKADLVVCDG 97 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq-~map~~g-v~~i~gDIt~~~~~--------------------~~i~~~l~~~~~DlVlsDg 97 (286)
.++.+|+=+||||=|... .++...| ..++..|..+.... ..+.+...+..+|+|+
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vi--- 243 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVI--- 243 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEE---
Confidence 344599999999966553 3333334 34445566554321 1111111222455554
Q ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 98 APDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 98 ap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
+++|. ..++..+.+.+||||++++--..+..
T Consensus 244 --e~~G~------------~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 244 --EAVGS------------PPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred --ECCCC------------HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 44551 34788999999999999876554443
No 292
>PRK06128 oxidoreductase; Provisional
Probab=43.77 E-value=85 Score=28.70 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=38.2
Q ss_pred cEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCCCCC--CCCCcccH-----HHHHHHH--HHHHHHHHhcccCCcEE
Q 023158 65 VIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGAPDV--TGLHDMDE-----FVQSQLI--LAGLTVVTHVLKEGGKF 133 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDgap~~--tG~~~~D~-----~~~~~L~--~aaL~~a~~vLkpGG~f 133 (286)
+.++++|+++....+++.+... -+++|+|+...+... ..+.+.+. .....+. ...+..+...++++|.+
T Consensus 108 ~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~i 187 (300)
T PRK06128 108 AVALPGDLKDEAFCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASI 187 (300)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEE
Confidence 5678899999876554433221 146999999875321 11222211 1122221 22334455667788887
Q ss_pred EE
Q 023158 134 IA 135 (286)
Q Consensus 134 V~ 135 (286)
|.
T Consensus 188 v~ 189 (300)
T PRK06128 188 IN 189 (300)
T ss_pred EE
Confidence 74
No 293
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.51 E-value=1.2e+02 Score=26.75 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=24.5
Q ss_pred CcEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
.+.++++|+++.+..+++.+.+. .+++|+++....
T Consensus 56 ~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg 92 (252)
T PRK06079 56 EDLLVECDVASDESIERAFATIKERVGKIDGIVHAIA 92 (252)
T ss_pred ceeEEeCCCCCHHHHHHHHHHHHHHhCCCCEEEEccc
Confidence 46788999999877655443321 147999998864
No 294
>PRK05884 short chain dehydrogenase; Provisional
Probab=43.43 E-value=1e+02 Score=26.90 Aligned_cols=34 Identities=24% Similarity=0.126 Sum_probs=25.5
Q ss_pred CcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 98 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDga 98 (286)
++..+++|+++...++.+.+.+. +.+|+++....
T Consensus 45 ~~~~~~~D~~~~~~v~~~~~~~~-~~id~lv~~ag 78 (223)
T PRK05884 45 DVDAIVCDNTDPASLEEARGLFP-HHLDTIVNVPA 78 (223)
T ss_pred cCcEEecCCCCHHHHHHHHHHHh-hcCcEEEECCC
Confidence 46788999999887776666553 36899998754
No 295
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=43.31 E-value=77 Score=29.15 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=14.2
Q ss_pred HHHHHHhcccCCcEEEEE
Q 023158 119 GLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~K 136 (286)
.+..+.+.|+++|+++.-
T Consensus 240 ~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 240 TIEQALALARPGGKVVLV 257 (343)
T ss_pred HHHHHHHHhhcCCEEEEE
Confidence 456678899999998864
No 296
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=43.29 E-value=19 Score=34.43 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=26.9
Q ss_pred HHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHh
Q 023158 116 ILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKL 152 (286)
Q Consensus 116 ~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~ 152 (286)
+..+|..+..+|+|||.+++=+|.+-+..-+.+.++.
T Consensus 220 L~~~L~~a~~~L~~gGrl~VISFHSLEDRiVK~~f~~ 256 (310)
T PF01795_consen 220 LERGLEAAPDLLKPGGRLVVISFHSLEDRIVKQFFRE 256 (310)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcEEEEEEecchhhHHHHHHHHH
Confidence 3555677889999999999999987655544444443
No 297
>PRK07806 short chain dehydrogenase; Provisional
Probab=43.23 E-value=46 Score=29.05 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=23.3
Q ss_pred CcEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
.+.++++|+++......+.+... .+.+|.|+...+
T Consensus 57 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag 93 (248)
T PRK07806 57 RASAVGADLTDEESVAALMDTAREEFGGLDALVLNAS 93 (248)
T ss_pred ceEEEEcCCCCHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 36788999999876654443221 136899887764
No 298
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=42.81 E-value=15 Score=32.30 Aligned_cols=54 Identities=22% Similarity=0.235 Sum_probs=34.3
Q ss_pred CCccEEEeCCCCCCCCCCcc-cHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCC
Q 023158 88 CKADLVVCDGAPDVTGLHDM-DEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKD 142 (286)
Q Consensus 88 ~~~DlVlsDgap~~tG~~~~-D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~ 142 (286)
++||++.|-.+..-.|+.-. |...-..- ..++..+.++|||||.|.+-+--|.+
T Consensus 62 ~~fD~~as~~siEh~GLGRYGDPidp~Gd-l~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177)
T PF03269_consen 62 GSFDFAASFSSIEHFGLGRYGDPIDPIGD-LRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177)
T ss_pred ccchhhheechhccccccccCCCCCcccc-HHHHHHHHHhhccCCeEEEEeecCCc
Confidence 57999988777655554221 11000011 34566778999999999988876654
No 299
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=42.80 E-value=71 Score=29.86 Aligned_cols=36 Identities=22% Similarity=0.188 Sum_probs=21.0
Q ss_pred cCCCCEEEEEcccc-cccccccCCCCCcEEEEeeCCC
Q 023158 39 FEGVKRVVDLCAAP-GSWSQPMAPIEGVIQVQGDITN 74 (286)
Q Consensus 39 ~~~g~~VLDLgaaP-GswSq~map~~gv~~i~gDIt~ 74 (286)
++++.+||=+|||+ |..+..++...|+.++..|.+.
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~ 200 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP 200 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 57789999999844 3232233434466555555443
No 300
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=41.69 E-value=82 Score=29.84 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=14.6
Q ss_pred HHHHHHhcccCCcEEEEE
Q 023158 119 GLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~K 136 (286)
++..+.+.|++||++|.-
T Consensus 260 ~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 260 ALGPLLGLLKVNGKLITL 277 (360)
T ss_pred HHHHHHHHhcCCcEEEEe
Confidence 466788899999999854
No 301
>PRK07578 short chain dehydrogenase; Provisional
Probab=41.68 E-value=1.5e+02 Score=24.91 Aligned_cols=67 Identities=30% Similarity=0.430 Sum_probs=38.0
Q ss_pred EEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCC-CCCCcccH--H---HHHHH--HHHHHHHHHhcccCCcEEEE
Q 023158 67 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDV-TGLHDMDE--F---VQSQL--ILAGLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 67 ~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~-tG~~~~D~--~---~~~~L--~~aaL~~a~~vLkpGG~fV~ 135 (286)
.+++|+++.+..+.+.+.+ +++|+|++...... .-+.+.+. + ....+ ....++.+...++++|.++.
T Consensus 35 ~~~~D~~~~~~~~~~~~~~--~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~ 109 (199)
T PRK07578 35 DVQVDITDPASIRALFEKV--GKVDAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTL 109 (199)
T ss_pred ceEecCCChHHHHHHHHhc--CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 4688999998877776665 36999998865321 11112211 1 11111 12233445566677888775
No 302
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=40.85 E-value=14 Score=33.37 Aligned_cols=17 Identities=41% Similarity=0.392 Sum_probs=14.3
Q ss_pred CCCEEEEEccccccccc
Q 023158 41 GVKRVVDLCAAPGSWSQ 57 (286)
Q Consensus 41 ~g~~VLDLgaaPGswSq 57 (286)
.|.+|||+|+|+|=-+.
T Consensus 79 rgkrVLd~gagsgLvaI 95 (218)
T COG3897 79 RGKRVLDLGAGSGLVAI 95 (218)
T ss_pred ccceeeecccccChHHH
Confidence 37899999999996555
No 303
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=40.50 E-value=11 Score=30.28 Aligned_cols=32 Identities=19% Similarity=-0.019 Sum_probs=22.0
Q ss_pred EEEEEcccccccccccCCC-CCcEEEEeeCCCh
Q 023158 44 RVVDLCAAPGSWSQPMAPI-EGVIQVQGDITNA 75 (286)
Q Consensus 44 ~VLDLgaaPGswSq~map~-~gv~~i~gDIt~~ 75 (286)
.|||+||+.|.++..++.. ++.+++..+....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~ 33 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPD 33 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHH
Confidence 4899999999998865432 3445666666543
No 304
>PRK06940 short chain dehydrogenase; Provisional
Probab=40.37 E-value=1.1e+02 Score=27.63 Aligned_cols=35 Identities=9% Similarity=0.021 Sum_probs=25.2
Q ss_pred cEEEEeeCCChhhHHHHHHhcC-CCCccEEEeCCCC
Q 023158 65 VIQVQGDITNARTAEVVIRHFD-GCKADLVVCDGAP 99 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~l~-~~~~DlVlsDgap 99 (286)
+.++++|+++.+..+.+.+.+. .+++|+|+...+.
T Consensus 51 ~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li~nAG~ 86 (275)
T PRK06940 51 VSTQEVDVSSRESVKALAATAQTLGPVTGLVHTAGV 86 (275)
T ss_pred EEEEEeecCCHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 6778999999887666554431 1469999988753
No 305
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=40.15 E-value=1.6e+02 Score=26.19 Aligned_cols=35 Identities=11% Similarity=-0.025 Sum_probs=24.6
Q ss_pred CcEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
.+..+++|+++.+..+.+.+.+. -+++|+++....
T Consensus 60 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ld~lv~nag 96 (257)
T PRK08594 60 ESLLLPCDVTSDEEITACFETIKEEVGVIHGVAHCIA 96 (257)
T ss_pred ceEEEecCCCCHHHHHHHHHHHHHhCCCccEEEECcc
Confidence 46788999999987665544332 157999988754
No 306
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=39.64 E-value=1e+02 Score=28.82 Aligned_cols=18 Identities=17% Similarity=-0.069 Sum_probs=14.5
Q ss_pred HHHHHHhcccCCcEEEEE
Q 023158 119 GLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~K 136 (286)
.+..+.++|++||++++-
T Consensus 251 ~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 251 LAFEALPALAPNGVVILF 268 (355)
T ss_pred HHHHHHHHccCCcEEEEE
Confidence 466778899999998754
No 307
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=39.37 E-value=75 Score=29.41 Aligned_cols=83 Identities=23% Similarity=0.207 Sum_probs=45.2
Q ss_pred CCCCEEEEEccccccc---ccccCCC-----------------------CCcEEEEeeCCChhhHHHHHHhcCCCCccEE
Q 023158 40 EGVKRVVDLCAAPGSW---SQPMAPI-----------------------EGVIQVQGDITNARTAEVVIRHFDGCKADLV 93 (286)
Q Consensus 40 ~~g~~VLDLgaaPGsw---Sq~map~-----------------------~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlV 93 (286)
..|.+||.+|-|=|-. .|...|. .+|+.+.|--.+ +...+.++.||=|
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeD------vl~~L~d~~FDGI 173 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWED------VLNTLPDKHFDGI 173 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHh------hhccccccCccee
Confidence 5788999999998854 3432222 223333332211 2223344557766
Q ss_pred EeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCC
Q 023158 94 VCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGK 141 (286)
Q Consensus 94 lsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~ 141 (286)
.-|.- + -..+-++.-..-+.++|||+|.|- .|.|-
T Consensus 174 ~yDTy----~-------e~yEdl~~~hqh~~rLLkP~gv~S--yfNg~ 208 (271)
T KOG1709|consen 174 YYDTY----S-------ELYEDLRHFHQHVVRLLKPEGVFS--YFNGL 208 (271)
T ss_pred Eeech----h-------hHHHHHHHHHHHHhhhcCCCceEE--EecCc
Confidence 66531 0 111223444457889999999875 44443
No 308
>PRK12742 oxidoreductase; Provisional
Probab=38.92 E-value=2e+02 Score=24.60 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=24.4
Q ss_pred CcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 99 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap 99 (286)
++.++.+|+++.....++.+.+ +++|+|++....
T Consensus 52 ~~~~~~~D~~~~~~~~~~~~~~--~~id~li~~ag~ 85 (237)
T PRK12742 52 GATAVQTDSADRDAVIDVVRKS--GALDILVVNAGI 85 (237)
T ss_pred CCeEEecCCCCHHHHHHHHHHh--CCCcEEEECCCC
Confidence 5677889999987665555544 469999987643
No 309
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=38.78 E-value=1.2e+02 Score=28.30 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=45.4
Q ss_pred cEEEEeeCCChhhHHHH----HHhcCCCCccEEEeCCCC----CCCCCCc---ccHH-----HHHHHHHHHHHHHHhccc
Q 023158 65 VIQVQGDITNARTAEVV----IRHFDGCKADLVVCDGAP----DVTGLHD---MDEF-----VQSQLILAGLTVVTHVLK 128 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i----~~~l~~~~~DlVlsDgap----~~tG~~~---~D~~-----~~~~L~~aaL~~a~~vLk 128 (286)
..++++|+++.+.++.+ .+++ +++|.+++-.+. .-+|... .+.+ ++.--..+....+..++.
T Consensus 58 ~~v~~cDV~~d~~i~~~f~~i~~~~--g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~ 135 (259)
T COG0623 58 DLVLPCDVTNDESIDALFATIKKKW--GKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMN 135 (259)
T ss_pred CeEEecCCCCHHHHHHHHHHHHHhh--CcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcC
Confidence 45789999998876544 4454 479999887653 1122110 1111 111122334455667899
Q ss_pred CCcEEEEEEccCC
Q 023158 129 EGGKFIAKIFRGK 141 (286)
Q Consensus 129 pGG~fV~Kif~g~ 141 (286)
+||.+|.-++-|.
T Consensus 136 ~ggSiltLtYlgs 148 (259)
T COG0623 136 NGGSILTLTYLGS 148 (259)
T ss_pred CCCcEEEEEeccc
Confidence 9999998888664
No 310
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=38.75 E-value=47 Score=28.75 Aligned_cols=82 Identities=24% Similarity=0.270 Sum_probs=42.7
Q ss_pred CEEEEEccccccccc----------------ccCCC-----CCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCC
Q 023158 43 KRVVDLCAAPGSWSQ----------------PMAPI-----EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDV 101 (286)
Q Consensus 43 ~~VLDLgaaPGswSq----------------~map~-----~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~ 101 (286)
.-||+||=|-|--=. .++.. +--.+++|||.+ |+.. ...+ +.++-++-+|..
T Consensus 30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~P~~~~~ilGdi~~--tl~~-~~~~-g~~a~laHaD~G--- 102 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSSTPPEEDLILGDIRE--TLPA-LARF-GAGAALAHADIG--- 102 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG---GGGEEES-HHH--HHHH-HHHH--S-EEEEEE------
T ss_pred CceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCCCchHheeeccHHH--HhHH-HHhc-CCceEEEEeecC---
Confidence 479999999996322 11111 223588999976 4444 4455 468999999963
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEE
Q 023158 102 TGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 102 tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~ 135 (286)
+|..+.|.. .....-..+..+|.|||.+|.
T Consensus 103 ~g~~~~d~a----~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 103 TGDKEKDDA----TAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp -S-HHHHHH----HHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCcchhHH----HHHhhhHHHHHHhcCCcEEEe
Confidence 344433322 112223456789999999985
No 311
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=37.90 E-value=26 Score=33.91 Aligned_cols=132 Identities=18% Similarity=0.169 Sum_probs=63.7
Q ss_pred cCCCCEEEEEcccccccc--cccCCCCCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCc--ccHHHHHH
Q 023158 39 FEGVKRVVDLCAAPGSWS--QPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHD--MDEFVQSQ 114 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswS--q~map~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~--~D~~~~~~ 114 (286)
+++|.+|+=.|+| |-=. ..++.--|.+++..|+.+... +..+.| .+|.++..-.++...... .|-.+..-
T Consensus 164 ~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~--e~a~~l---GAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 164 VKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKL--ELAKKL---GADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CCCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHH--HHHHHh---CCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 4678899888888 5322 233433467888888887543 222333 144443311110000000 00000000
Q ss_pred HHHHHHHHHHhcccCCcEEEEEEccC-CChHHHHHHHHhcCCeeEee-CCCCCCCCchhhh-hhhcC
Q 023158 115 LILAGLTVVTHVLKEGGKFIAKIFRG-KDTSLLYCQLKLFFPVVTFA-KPKSSRNSSIEAF-AVCEN 178 (286)
Q Consensus 115 L~~aaL~~a~~vLkpGG~fV~Kif~g-~~~~~l~~~l~~~F~~V~~~-KP~sSR~~S~E~y-vVc~g 178 (286)
....++.+.+.||+||++|+-=..+ .....+ ......++.+.+. --.-+|....|.+ +.++|
T Consensus 238 -~~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~-~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g 302 (339)
T COG1064 238 -GPATLEPSLKALRRGGTLVLVGLPGGGPIPLL-PAFLLILKEISIVGSLVGTRADLEEALDFAAEG 302 (339)
T ss_pred -ChhhHHHHHHHHhcCCEEEEECCCCCcccCCC-CHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhC
Confidence 0345778899999999999754442 221111 1111234444443 3344566666766 44444
No 312
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=37.24 E-value=1.8e+02 Score=26.49 Aligned_cols=83 Identities=19% Similarity=0.336 Sum_probs=54.8
Q ss_pred CCEEEEEccccccccc--------------------ccCC-------CCCcEEEEeeCCChhhHHHHHHhcCCCCccEEE
Q 023158 42 VKRVVDLCAAPGSWSQ--------------------PMAP-------IEGVIQVQGDITNARTAEVVIRHFDGCKADLVV 94 (286)
Q Consensus 42 g~~VLDLgaaPGswSq--------------------~map-------~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVl 94 (286)
...|+..|.+-||-.. .+.| .|++.+++|+-+++...+.+...-.+.+-=+|+
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfvi 149 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFVI 149 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEEE
Confidence 4589999999998443 1112 478999999999998777765443333323344
Q ss_pred eCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEE
Q 023158 95 CDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 95 sDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~K 136 (286)
-|. .|. .+.+++.|+.-..+|..|-.+|+.
T Consensus 150 lDs------dHs------~~hvLAel~~~~pllsaG~Y~vVe 179 (237)
T COG3510 150 LDS------DHS------MEHVLAELKLLAPLLSAGDYLVVE 179 (237)
T ss_pred ecC------Cch------HHHHHHHHHHhhhHhhcCceEEEe
Confidence 443 122 233577788778888888888754
No 313
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=36.94 E-value=1.1e+02 Score=28.28 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=14.2
Q ss_pred HHHHHHhcccCCcEEEEE
Q 023158 119 GLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~K 136 (286)
.+..+.+.|+++|++|.-
T Consensus 247 ~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 247 CIQTAIYATRPGGTVVLV 264 (343)
T ss_pred HHHHHHHHhhcCCEEEEE
Confidence 456678899999999853
No 314
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=36.89 E-value=40 Score=32.40 Aligned_cols=19 Identities=32% Similarity=0.597 Sum_probs=16.7
Q ss_pred cCCCCEEEEEccccccccc
Q 023158 39 FEGVKRVVDLCAAPGSWSQ 57 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq 57 (286)
|++|++|+=+-++.|.|+.
T Consensus 99 fk~Gd~VIp~~a~lGtW~t 117 (354)
T KOG0025|consen 99 FKPGDWVIPLSANLGTWRT 117 (354)
T ss_pred cCCCCeEeecCCCCcccee
Confidence 6788899999999999987
No 315
>PRK12746 short chain dehydrogenase; Provisional
Probab=36.03 E-value=2.2e+02 Score=24.80 Aligned_cols=35 Identities=9% Similarity=0.293 Sum_probs=24.0
Q ss_pred cEEEEeeCCChhhHHHHHHh----c----CCCCccEEEeCCCC
Q 023158 65 VIQVQGDITNARTAEVVIRH----F----DGCKADLVVCDGAP 99 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~----l----~~~~~DlVlsDgap 99 (286)
+.++++|+++.+.+..+.+. + +...+|.|++..+.
T Consensus 58 ~~~~~~D~~d~~~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 58 AFLIEADLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGI 100 (254)
T ss_pred EEEEEcCcCCHHHHHHHHHHHHHHhccccCCCCccEEEECCCC
Confidence 67889999998776544332 2 12468999987653
No 316
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.59 E-value=1.4e+02 Score=26.61 Aligned_cols=35 Identities=17% Similarity=0.004 Sum_probs=24.8
Q ss_pred CcEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
.+.++++|+++.+..+.+.+... .+++|+++....
T Consensus 58 ~~~~~~~Dv~~~~~i~~~~~~~~~~~g~iD~li~nAG 94 (256)
T PRK07889 58 PAPVLELDVTNEEHLASLADRVREHVDGLDGVVHSIG 94 (256)
T ss_pred CCcEEeCCCCCHHHHHHHHHHHHHHcCCCcEEEEccc
Confidence 36688999999877665544321 147999999865
No 317
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.19 E-value=2e+02 Score=25.48 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=23.7
Q ss_pred cEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 65 VIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
+.++++|+++.+..+++.+.+. .+++|+++....
T Consensus 62 ~~~~~~D~~~~~~v~~~~~~~~~~~g~ld~lv~nAg 97 (258)
T PRK07533 62 PIFLPLDVREPGQLEAVFARIAEEWGRLDFLLHSIA 97 (258)
T ss_pred ceEEecCcCCHHHHHHHHHHHHHHcCCCCEEEEcCc
Confidence 5678999999877655543321 147999999865
No 318
>PRK08267 short chain dehydrogenase; Provisional
Probab=35.13 E-value=2e+02 Score=25.25 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=25.3
Q ss_pred CcEEEEeeCCChhhHHHHHHhcC---CCCccEEEeCCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFD---GCKADLVVCDGAP 99 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~---~~~~DlVlsDgap 99 (286)
.+.++++|+++.....++..... .+++|.|++....
T Consensus 49 ~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 49 NAWTGALDVTDRAAWDAALADFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEEECCCC
Confidence 47889999999876655443321 2579999987653
No 319
>PRK06196 oxidoreductase; Provisional
Probab=34.68 E-value=1.1e+02 Score=28.30 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=26.5
Q ss_pred CCcEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCCC
Q 023158 63 EGVIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGAP 99 (286)
Q Consensus 63 ~gv~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDgap 99 (286)
.++.++++|+++....+.+.+.+. .+++|+|++..+.
T Consensus 71 ~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 71 DGVEVVMLDLADLESVRAFAERFLDSGRRIDILINNAGV 109 (315)
T ss_pred hhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEEECCCC
Confidence 357889999999877665554332 1479999998753
No 320
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=33.92 E-value=1.3e+02 Score=30.06 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=52.2
Q ss_pred cCCCCEEEEEcccccccccccCCCCCcEEE-EeeCCChhhHHHHH-----Hhc-----------------------CCCC
Q 023158 39 FEGVKRVVDLCAAPGSWSQPMAPIEGVIQV-QGDITNARTAEVVI-----RHF-----------------------DGCK 89 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGswSq~map~~gv~~i-~gDIt~~~~~~~i~-----~~l-----------------------~~~~ 89 (286)
++...+||=||-|-|=-..++-..|++..| +.|+- +.+++-.. ..+ ....
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLD-P~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLD-PRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecC-HHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 356689999999998766666556654333 44443 22221111 000 1347
Q ss_pred ccEEEeCCC-CCCCCCCcccHHHHHHHH-HHHHHHHHhcccCCcEEEEEEc
Q 023158 90 ADLVVCDGA-PDVTGLHDMDEFVQSQLI-LAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 90 ~DlVlsDga-p~~tG~~~~D~~~~~~L~-~aaL~~a~~vLkpGG~fV~Kif 138 (286)
||.|+-|.. |+.. ....|- ..-...+.+.|+++|.||+..-
T Consensus 366 fD~vIVDl~DP~tp--------s~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508)
T COG4262 366 FDVVIVDLPDPSTP--------SIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508)
T ss_pred ccEEEEeCCCCCCc--------chhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence 899999873 2211 111111 2224567899999999998653
No 321
>PRK06953 short chain dehydrogenase; Provisional
Probab=33.82 E-value=3e+02 Score=23.50 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=27.4
Q ss_pred CcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 98 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDga 98 (286)
++.++++|+++.+.++.+...+.+.++|+|++...
T Consensus 45 ~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag 79 (222)
T PRK06953 45 GAEALALDVADPASVAGLAWKLDGEALDAAVYVAG 79 (222)
T ss_pred cceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCC
Confidence 56788999999988777665565567999998764
No 322
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=33.17 E-value=1.5e+02 Score=27.38 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=13.7
Q ss_pred HHHHHHhcccCCcEEEEE
Q 023158 119 GLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~K 136 (286)
+...+.+.|+++|+++.-
T Consensus 244 ~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 244 AIEQGLKALTPGGRVSIL 261 (341)
T ss_pred HHHHHHHHhccCCEEEEE
Confidence 345667889999999853
No 323
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=32.82 E-value=1e+02 Score=26.60 Aligned_cols=87 Identities=23% Similarity=0.206 Sum_probs=45.8
Q ss_pred EEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHH
Q 023158 67 QVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLL 146 (286)
Q Consensus 67 ~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l 146 (286)
+..=|..++. ++.+.+ .+++|+|++|-.. + ..+........+..++++++.+++. .|..+..+
T Consensus 68 F~fyD~~~p~---~~~~~l-~~~~d~vv~DPPF-------l----~~ec~~k~a~ti~~L~k~~~kii~~--Tg~~~~~~ 130 (162)
T PF10237_consen 68 FVFYDYNEPE---ELPEEL-KGKFDVVVIDPPF-------L----SEECLTKTAETIRLLLKPGGKIILC--TGEEMEEL 130 (162)
T ss_pred eEECCCCChh---hhhhhc-CCCceEEEECCCC-------C----CHHHHHHHHHHHHHHhCccceEEEe--cHHHHHHH
Confidence 5555666654 344556 3689999999754 1 1122233334444455777776643 44444444
Q ss_pred HHHHHhcCCeeEeeCCCCCCCCchhh
Q 023158 147 YCQLKLFFPVVTFAKPKSSRNSSIEA 172 (286)
Q Consensus 147 ~~~l~~~F~~V~~~KP~sSR~~S~E~ 172 (286)
+..+- -++. ..++|.-.++-+.|.
T Consensus 131 ~~~ll-~~~~-~~f~p~h~~~L~n~f 154 (162)
T PF10237_consen 131 IKKLL-GLRM-CDFQPEHPNNLSNEF 154 (162)
T ss_pred HHHHh-CeeE-EeEEeccccCCccee
Confidence 44332 2333 334777666555443
No 324
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=32.56 E-value=2.7e+02 Score=24.53 Aligned_cols=19 Identities=21% Similarity=0.136 Sum_probs=13.9
Q ss_pred CcCCCCEEEEEccccccccc
Q 023158 38 IFEGVKRVVDLCAAPGSWSQ 57 (286)
Q Consensus 38 l~~~g~~VLDLgaaPGswSq 57 (286)
-+.++.+||-.|| +|++.+
T Consensus 136 ~~~~~~~vli~g~-~~~~g~ 154 (323)
T cd08241 136 RLQPGETVLVLGA-AGGVGL 154 (323)
T ss_pred CCCCCCEEEEEcC-CchHHH
Confidence 3567889999988 465555
No 325
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=31.68 E-value=2e+02 Score=26.37 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=13.2
Q ss_pred HHHHHhcccCCcEEEE
Q 023158 120 LTVVTHVLKEGGKFIA 135 (286)
Q Consensus 120 L~~a~~vLkpGG~fV~ 135 (286)
+..+.+.|++||++|+
T Consensus 220 ~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 220 SNTVIGQMKKFGRIAI 235 (325)
T ss_pred HHHHHHHhCcCcEEEE
Confidence 4567889999999985
No 326
>PRK06182 short chain dehydrogenase; Validated
Probab=31.63 E-value=2.1e+02 Score=25.48 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=25.7
Q ss_pred CcEEEEeeCCChhhHHHHHHhc--CCCCccEEEeCCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHF--DGCKADLVVCDGAP 99 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l--~~~~~DlVlsDgap 99 (286)
++.++++|+++.+..+.+.+.+ ..+.+|+|++....
T Consensus 47 ~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 47 GVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 6889999999987765554432 11469999998654
No 327
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=31.53 E-value=1.1e+02 Score=29.69 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=12.3
Q ss_pred cEEEEeeCCChhhHHHHHHhcCCCCcc
Q 023158 65 VIQVQGDITNARTAEVVIRHFDGCKAD 91 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~l~~~~~D 91 (286)
|+.+..|+-..-.+++|.+.+...+.-
T Consensus 118 V~~v~~~~G~~~~le~i~~~lsqh~p~ 144 (385)
T KOG2862|consen 118 VDVVEADIGQAVPLEEITEKLSQHKPK 144 (385)
T ss_pred eeEEecCcccCccHHHHHHHHHhcCCc
Confidence 444444554444444554444433333
No 328
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.46 E-value=2.6e+02 Score=25.13 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=24.2
Q ss_pred cEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 65 VIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
+..+++|+++.+..+.+.+.+. -+++|+++....
T Consensus 62 ~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAG 97 (272)
T PRK08159 62 FVAGHCDVTDEASIDAVFETLEKKWGKLDFVVHAIG 97 (272)
T ss_pred ceEEecCCCCHHHHHHHHHHHHHhcCCCcEEEECCc
Confidence 5678999999887665544331 147999999865
No 329
>PRK06101 short chain dehydrogenase; Provisional
Probab=31.03 E-value=3.5e+02 Score=23.44 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=24.0
Q ss_pred CcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDG 97 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDg 97 (286)
.+.++++|+++....+++.+.+.. ..|.++...
T Consensus 47 ~~~~~~~D~~~~~~~~~~~~~~~~-~~d~~i~~a 79 (240)
T PRK06101 47 NIFTLAFDVTDHPGTKAALSQLPF-IPELWIFNA 79 (240)
T ss_pred CCeEEEeeCCCHHHHHHHHHhccc-CCCEEEEcC
Confidence 578899999999877777666543 357666654
No 330
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.90 E-value=2.5e+02 Score=24.94 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=22.6
Q ss_pred EEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 66 IQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 66 ~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
..+++|+++.+..+.+.+.+. -+++|+++....
T Consensus 61 ~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnag 95 (260)
T PRK06603 61 FVSELDVTNPKSISNLFDDIKEKWGSFDFLLHGMA 95 (260)
T ss_pred eEEEccCCCHHHHHHHHHHHHHHcCCccEEEEccc
Confidence 457899999877665544321 147999998764
No 331
>PRK05693 short chain dehydrogenase; Provisional
Probab=30.82 E-value=3.3e+02 Score=24.16 Aligned_cols=36 Identities=14% Similarity=0.242 Sum_probs=25.7
Q ss_pred CcEEEEeeCCChhhHHHHHHhc--CCCCccEEEeCCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHF--DGCKADLVVCDGAP 99 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l--~~~~~DlVlsDgap 99 (286)
++.++++|+++.+..+++.+.. ..+++|+|+.....
T Consensus 45 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 45 GFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 5778999999987665554433 12469999998754
No 332
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=30.69 E-value=1.9e+02 Score=25.67 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=24.0
Q ss_pred cEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 65 VIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
+..+++|+++.+.++.+.+.+. .+++|++++...
T Consensus 61 ~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nag 96 (258)
T PRK07370 61 SLFLPCDVQDDAQIEETFETIKQKWGKLDILVHCLA 96 (258)
T ss_pred ceEeecCcCCHHHHHHHHHHHHHHcCCCCEEEEccc
Confidence 5678999999877655443331 147999998865
No 333
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.26 E-value=1.3e+02 Score=27.06 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=24.7
Q ss_pred CcEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
.+.++++|+++.+..+.+.+... -+++|+++....
T Consensus 57 ~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~linnAg 93 (262)
T PRK07984 57 SDIVLPCDVAEDASIDAMFAELGKVWPKFDGFVHSIG 93 (262)
T ss_pred CceEeecCCCCHHHHHHHHHHHHhhcCCCCEEEECCc
Confidence 46678999999887665543321 146999999875
No 334
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=29.75 E-value=1e+02 Score=29.39 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=17.9
Q ss_pred CCCCEEEEEcccccccccccC
Q 023158 40 EGVKRVVDLCAAPGSWSQPMA 60 (286)
Q Consensus 40 ~~g~~VLDLgaaPGswSq~ma 60 (286)
+++..+||.-+|-||.|..|.
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL 39 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAIL 39 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHH
Confidence 577899999999999999543
No 335
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.28 E-value=3e+02 Score=24.92 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=23.3
Q ss_pred EEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 66 IQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 66 ~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
..+++|+++.+..+.+.+.+. .+++|+++....
T Consensus 58 ~~~~~Dv~d~~~v~~~~~~i~~~~g~iDilVnnAG 92 (274)
T PRK08415 58 YVYELDVSKPEHFKSLAESLKKDLGKIDFIVHSVA 92 (274)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 568899999877655544331 147999999865
No 336
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=29.25 E-value=1e+02 Score=29.85 Aligned_cols=16 Identities=19% Similarity=0.111 Sum_probs=13.3
Q ss_pred CCEEEEEccccccccc
Q 023158 42 VKRVVDLCAAPGSWSQ 57 (286)
Q Consensus 42 g~~VLDLgaaPGswSq 57 (286)
+..+||+||--..-.+
T Consensus 139 ~~~~LDvGANvd~~~~ 154 (338)
T COG0416 139 KTVVLDVGANVDCKPE 154 (338)
T ss_pred ceEEEeCCCCCCCCHH
Confidence 4789999999887666
No 337
>PRK08265 short chain dehydrogenase; Provisional
Probab=28.32 E-value=4.1e+02 Score=23.39 Aligned_cols=35 Identities=17% Similarity=0.124 Sum_probs=24.0
Q ss_pred CcEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
.+.++++|+++.+..+++.+... .+++|.|+....
T Consensus 53 ~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~~ag 89 (261)
T PRK08265 53 RARFIATDITDDAAIERAVATVVARFGRVDILVNLAC 89 (261)
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 37788999999876654433221 146999998865
No 338
>PRK07041 short chain dehydrogenase; Provisional
Probab=28.22 E-value=2.6e+02 Score=23.84 Aligned_cols=34 Identities=24% Similarity=0.162 Sum_probs=26.8
Q ss_pred CCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCC
Q 023158 63 EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 98 (286)
Q Consensus 63 ~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDga 98 (286)
.+++++.+|+++....+.+.+.+ +++|.++....
T Consensus 45 ~~~~~~~~Dl~~~~~~~~~~~~~--~~id~li~~ag 78 (230)
T PRK07041 45 APVRTAALDITDEAAVDAFFAEA--GPFDHVVITAA 78 (230)
T ss_pred CceEEEEccCCCHHHHHHHHHhc--CCCCEEEECCC
Confidence 35778899999998877777665 46999998764
No 339
>PLN02827 Alcohol dehydrogenase-like
Probab=28.07 E-value=1.8e+02 Score=27.74 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=13.7
Q ss_pred HHHHHHhcccCC-cEEEE
Q 023158 119 GLTVVTHVLKEG-GKFIA 135 (286)
Q Consensus 119 aL~~a~~vLkpG-G~fV~ 135 (286)
++..+.+.|++| |++|+
T Consensus 276 ~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 276 IATTALQSCSDGWGLTVT 293 (378)
T ss_pred HHHHHHHhhccCCCEEEE
Confidence 456778889998 99985
No 340
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=27.95 E-value=1.2e+02 Score=29.76 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=23.7
Q ss_pred CcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 99 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap 99 (286)
|-..+..|+.+++-.+.+.+.+ +.+|+||.+..|
T Consensus 65 gKrsi~LDLk~~~Gr~~l~~Li--~~ADVvien~rp 98 (405)
T PRK03525 65 NLHALSLNIFKDEGREAFLKLM--ETTDIFIEASKG 98 (405)
T ss_pred CCeeEEEeCCCHHHHHHHHHHH--HhCCEEEECCCc
Confidence 5677889999987665555554 357888777644
No 341
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=27.22 E-value=1e+02 Score=25.34 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=31.0
Q ss_pred CCccEEEeCC-CCCCCC-CCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccCCChHHHHHHHHhc-CC
Q 023158 88 CKADLVVCDG-APDVTG-LHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRGKDTSLLYCQLKLF-FP 155 (286)
Q Consensus 88 ~~~DlVlsDg-ap~~tG-~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g~~~~~l~~~l~~~-F~ 155 (286)
..+|+|.-|| +|.... +|+ ...+....++++|||+|+ +|... ..++..|... |.
T Consensus 49 ~~~Da~ylDgFsP~~nPelWs----------~e~~~~l~~~~~~~~~l~--Tys~a--~~Vr~~L~~aGF~ 105 (124)
T PF05430_consen 49 ARFDAWYLDGFSPAKNPELWS----------EELFKKLARLSKPGGTLA--TYSSA--GAVRRALQQAGFE 105 (124)
T ss_dssp T-EEEEEE-SS-TTTSGGGSS----------HHHHHHHHHHEEEEEEEE--ES--B--HHHHHHHHHCTEE
T ss_pred ccCCEEEecCCCCcCCcccCC----------HHHHHHHHHHhCCCcEEE--Eeech--HHHHHHHHHcCCE
Confidence 5899999998 554321 222 335677789999999876 44432 3455555543 54
No 342
>PRK07985 oxidoreductase; Provisional
Probab=27.12 E-value=1.8e+02 Score=26.59 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=22.4
Q ss_pred cEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 65 VIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
+.++++|+++.+.+.++.+... -+++|.++....
T Consensus 102 ~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~~Ag 137 (294)
T PRK07985 102 AVLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAG 137 (294)
T ss_pred EEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 5678999999876554433221 146899888754
No 343
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=27.02 E-value=4.4e+02 Score=23.71 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=14.3
Q ss_pred HHHHHHhcccCCcEEEEEE
Q 023158 119 GLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~Ki 137 (286)
.+..+.+.|+++|++|.--
T Consensus 225 ~~~~~~~~l~~~G~~i~~g 243 (326)
T cd08289 225 TLAYLLSTLQYGGSVAVSG 243 (326)
T ss_pred HHHHHHHHhhcCCEEEEEe
Confidence 3456778899999998643
No 344
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=26.99 E-value=2.7e+02 Score=25.82 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=25.1
Q ss_pred CCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCC
Q 023158 63 EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 99 (286)
Q Consensus 63 ~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap 99 (286)
.+++++++|+++...+.++.+. .++|.|++-++.
T Consensus 55 ~~~~~~~~Dl~d~~~l~~~~~~---~~~d~ViH~Aa~ 88 (343)
T TIGR01472 55 ARMKLHYGDLTDSSNLRRIIDE---IKPTEIYNLAAQ 88 (343)
T ss_pred cceeEEEeccCCHHHHHHHHHh---CCCCEEEECCcc
Confidence 3588999999998765554433 358999998874
No 345
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=26.96 E-value=3.7e+02 Score=24.75 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=14.1
Q ss_pred HHHHHHhcccCCcEEEE
Q 023158 119 GLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~ 135 (286)
.+..+.+.|+++|++|.
T Consensus 256 ~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 256 TASLAFDILAKGGKLVL 272 (350)
T ss_pred HHHHHHHHhhcCCeEEE
Confidence 46677889999999985
No 346
>PRK05993 short chain dehydrogenase; Provisional
Probab=26.94 E-value=4.4e+02 Score=23.53 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=25.6
Q ss_pred CcEEEEeeCCChhhHHHHHHhc---CCCCccEEEeCCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHF---DGCKADLVVCDGAP 99 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l---~~~~~DlVlsDgap 99 (286)
++.++.+|+++....+.+.+.. .++.+|+|++.++.
T Consensus 48 ~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~~Ag~ 86 (277)
T PRK05993 48 GLEAFQLDYAEPESIAALVAQVLELSGGRLDALFNNGAY 86 (277)
T ss_pred CceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEECCCc
Confidence 6788999999987665554432 12479999998653
No 347
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=26.89 E-value=3.1e+02 Score=21.93 Aligned_cols=37 Identities=8% Similarity=0.180 Sum_probs=26.6
Q ss_pred CCcEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCCC
Q 023158 63 EGVIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGAP 99 (286)
Q Consensus 63 ~gv~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDgap 99 (286)
..+.+++.|+++....+.+.+.+. ..++|.|++....
T Consensus 52 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 52 AKITFIECDLSDPESIRALIEEVIKRFGPLDILINNAGI 90 (167)
T ss_dssp SEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEEECSC
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 457889999999877666554442 2579999987543
No 348
>PRK11430 putative CoA-transferase; Provisional
Probab=26.82 E-value=1.5e+02 Score=28.84 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=24.6
Q ss_pred CcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 99 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap 99 (286)
|-..+..|+.+++-.+.+.+.+ ..+|+||.+..|
T Consensus 70 gKrsv~lDLk~~~Gr~~~~~L~--~~ADVvien~rp 103 (381)
T PRK11430 70 GKESVVLDLKNDHDKSIFINML--KQADVLAENFRP 103 (381)
T ss_pred CCeEEEecCCCHHHHHHHHHHH--hcCCEEEeCCCc
Confidence 4567889999887665555554 468888888765
No 349
>PRK12937 short chain dehydrogenase; Provisional
Probab=26.57 E-value=2.5e+02 Score=24.15 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=23.9
Q ss_pred CcEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
.+.++++|+++...++++.+... .+++|.|+....
T Consensus 56 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 92 (245)
T PRK12937 56 RAIAVQADVADAAAVTRLFDAAETAFGRIDVLVNNAG 92 (245)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 46788999999876654443221 146899998865
No 350
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.91 E-value=2.8e+02 Score=25.00 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=23.2
Q ss_pred cEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 65 VIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
...+++|+++.+..+.+.+... -+++|+++....
T Consensus 59 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG 94 (271)
T PRK06505 59 DFVLPCDVEDIASVDAVFEALEKKWGKLDFVVHAIG 94 (271)
T ss_pred ceEEeCCCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence 3568999999876655443321 147999999865
No 351
>PF15147 DUF4578: Domain of unknown function (DUF4578)
Probab=25.91 E-value=26 Score=28.78 Aligned_cols=9 Identities=67% Similarity=1.453 Sum_probs=7.9
Q ss_pred Eccccccccc
Q 023158 48 LCAAPGSWSQ 57 (286)
Q Consensus 48 LgaaPGswSq 57 (286)
|||| |+||-
T Consensus 5 lCCg-gSWSc 13 (127)
T PF15147_consen 5 LCCG-GSWSC 13 (127)
T ss_pred cccC-CCcCC
Confidence 7998 99997
No 352
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=25.75 E-value=2.9e+02 Score=25.61 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=23.5
Q ss_pred CCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCC
Q 023158 63 EGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAP 99 (286)
Q Consensus 63 ~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap 99 (286)
.++.++++|+++...+.++ +. .+|.|++-++.
T Consensus 53 ~~~~~v~~Dl~d~~~l~~~---~~--~iD~Vih~Ag~ 84 (324)
T TIGR03589 53 PCLRFFIGDVRDKERLTRA---LR--GVDYVVHAAAL 84 (324)
T ss_pred CcEEEEEccCCCHHHHHHH---Hh--cCCEEEECccc
Confidence 3578899999998765444 32 48999987654
No 353
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=25.55 E-value=2.3e+02 Score=25.04 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=13.4
Q ss_pred HHHHHHhcccCCcEEEE
Q 023158 119 GLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~ 135 (286)
.+..+.+.|+++|+++.
T Consensus 172 ~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 172 ALETALRLLRDRGRVVL 188 (277)
T ss_pred HHHHHHHHhcCCcEEEE
Confidence 44566788999999985
No 354
>PRK00431 RNase III inhibitor; Provisional
Probab=24.63 E-value=2.8e+02 Score=23.59 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=16.1
Q ss_pred cEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCC
Q 023158 65 VIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 98 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDga 98 (286)
+.+++|||++. ++|.|+.-..
T Consensus 5 i~i~~Gdi~~~-------------~~daIVn~aN 25 (177)
T PRK00431 5 IEVVQGDITEL-------------EVDAIVNAAN 25 (177)
T ss_pred EEEEeCCcccc-------------cCCEEEECCC
Confidence 56789999984 5899988553
No 355
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=24.51 E-value=42 Score=33.09 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.2
Q ss_pred HHHHHHhcccCCcEEEEEEcc
Q 023158 119 GLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~Kif~ 139 (286)
-|..-.+-|.|||.+|+.+..
T Consensus 219 FL~~Ra~ELvpGG~mvl~~~G 239 (386)
T PLN02668 219 FLRARAQEMKRGGAMFLVCLG 239 (386)
T ss_pred HHHHHHHHhccCcEEEEEEec
Confidence 355566789999999987664
No 356
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=24.50 E-value=1.6e+02 Score=27.43 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=14.4
Q ss_pred HHHHHHhcccCCcEEEEE
Q 023158 119 GLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~K 136 (286)
.+..+.+.|++||++|+-
T Consensus 248 ~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 248 SINTCLEVTRAKGVMVQV 265 (343)
T ss_pred HHHHHHHHhhcCCEEEEE
Confidence 456678899999999864
No 357
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=24.40 E-value=61 Score=24.08 Aligned_cols=20 Identities=20% Similarity=0.508 Sum_probs=17.1
Q ss_pred CCCCCChhHHHHHHHHHhcc
Q 023158 254 VQPPIAPPYKRALEMKKASS 273 (286)
Q Consensus 254 ~~~p~~~~y~~~~~~~~~~~ 273 (286)
.+.|..++|.+|++|-+.+.
T Consensus 26 ~~d~~~~~Y~~A~klv~~Ga 45 (70)
T PF10975_consen 26 QRDPDSPLYSQAIKLVRQGA 45 (70)
T ss_pred cCCCCcchHHHHHHHHHcCC
Confidence 47789999999999988764
No 358
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=24.38 E-value=56 Score=29.91 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=22.7
Q ss_pred CEEEEEcccccccccccCCC-CCcEEEEeeCCC
Q 023158 43 KRVVDLCAAPGSWSQPMAPI-EGVIQVQGDITN 74 (286)
Q Consensus 43 ~~VLDLgaaPGswSq~map~-~gv~~i~gDIt~ 74 (286)
--+.|+|||=||+...++|. |.--++...|..
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~ 94 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRD 94 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhH
Confidence 47899999999999988875 333334444443
No 359
>PRK06701 short chain dehydrogenase; Provisional
Probab=24.18 E-value=3.6e+02 Score=24.50 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=22.7
Q ss_pred cEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 65 VIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
+.++.+|+++...++.+.+... .+++|.|+....
T Consensus 98 ~~~~~~Dl~~~~~~~~~~~~i~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 98 CLLIPGDVSDEAFCKDAVEETVRELGRLDILVNNAA 133 (290)
T ss_pred EEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 5678999999876654433221 136899998764
No 360
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=24.08 E-value=1.6e+02 Score=28.85 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=32.0
Q ss_pred HhcCCCCccE-EEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccC
Q 023158 83 RHFDGCKADL-VVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 140 (286)
Q Consensus 83 ~~l~~~~~Dl-VlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g 140 (286)
+.++.+.+|. ||+|. .++ ++ -+.+.+.+....+.++|||.++...+..
T Consensus 289 ~~~~~~s~~~~vL~D~-~Dw-----m~----~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 289 RRLPPGSFDRFVLSDH-MDW-----MD----PEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred HhCCCCCeeEEEecch-hhh-----CC----HHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 3344567775 67775 222 22 2445667777889999999999877653
No 361
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=23.88 E-value=2.6e+02 Score=26.36 Aligned_cols=19 Identities=16% Similarity=0.127 Sum_probs=13.8
Q ss_pred HHHHHHhcccCC-cEEEEEE
Q 023158 119 GLTVVTHVLKEG-GKFIAKI 137 (286)
Q Consensus 119 aL~~a~~vLkpG-G~fV~Ki 137 (286)
++..+.+.|++| |++++--
T Consensus 268 ~~~~~~~~~~~~~G~~v~~g 287 (368)
T TIGR02818 268 VMRAALECCHKGWGESIIIG 287 (368)
T ss_pred HHHHHHHHhhcCCCeEEEEe
Confidence 456677889886 9987543
No 362
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=23.65 E-value=5.6e+02 Score=24.16 Aligned_cols=95 Identities=17% Similarity=0.041 Sum_probs=53.0
Q ss_pred HHHHHHHHcCCcCCCCEEEEEcccccc--cccccCCCCCcEEEE-------------------eeCCChhhHHHHHHhcC
Q 023158 28 KLLQIDEEFNIFEGVKRVVDLCAAPGS--WSQPMAPIEGVIQVQ-------------------GDITNARTAEVVIRHFD 86 (286)
Q Consensus 28 KL~eId~~f~l~~~g~~VLDLgaaPGs--wSq~map~~gv~~i~-------------------gDIt~~~~~~~i~~~l~ 86 (286)
-.+.+...+.-+++|.+||=.|++-|- +...|+...|...+. .|..+....+.+.+..+
T Consensus 129 TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~ 208 (326)
T COG0604 129 TAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTG 208 (326)
T ss_pred HHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcC
Confidence 334445555557889999999876542 333343333422111 11222223344545555
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEccC
Q 023158 87 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIFRG 140 (286)
Q Consensus 87 ~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif~g 140 (286)
++.+|+|+--. | ...+..+...|++||+++.=-..+
T Consensus 209 g~gvDvv~D~v-----G-------------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 209 GKGVDVVLDTV-----G-------------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCCceEEEECC-----C-------------HHHHHHHHHHhccCCEEEEEecCC
Confidence 55688887432 1 223455788999999999755543
No 363
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.09 E-value=3.7e+02 Score=22.96 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=23.4
Q ss_pred CcEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
+++++++|+++....+++.+... -+.+|.|+...+
T Consensus 54 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ii~~ag 90 (238)
T PRK05786 54 NIHYVVGDVSSTESARNVIEKAAKVLNAIDGLVVTVG 90 (238)
T ss_pred CeEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 57889999999876655443321 135788887654
No 364
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.70 E-value=3.6e+02 Score=25.42 Aligned_cols=38 Identities=26% Similarity=0.516 Sum_probs=27.8
Q ss_pred CcEEEEeeCCChhhHHH----HHHhcCCCCccEEEeCCCCCCCC
Q 023158 64 GVIQVQGDITNARTAEV----VIRHFDGCKADLVVCDGAPDVTG 103 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~----i~~~l~~~~~DlVlsDgap~~tG 103 (286)
.++.+++|+++.+..+. +..+| +.+|+.+.++.-...+
T Consensus 64 ~v~~~~~Dvs~~~~~~~~~~~~~~~f--g~vDvLVNNAG~~~~~ 105 (282)
T KOG1205|consen 64 KVLVLQLDVSDEESVKKFVEWAIRHF--GRVDVLVNNAGISLVG 105 (282)
T ss_pred ccEEEeCccCCHHHHHHHHHHHHHhc--CCCCEEEecCcccccc
Confidence 58999999999875543 34566 4799999998643333
No 365
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=22.70 E-value=86 Score=29.23 Aligned_cols=90 Identities=10% Similarity=-0.100 Sum_probs=45.5
Q ss_pred cCCCCEEEEEccccccc-ccccCCCCCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCCCCCCCCC-cccHHHHHHHH
Q 023158 39 FEGVKRVVDLCAAPGSW-SQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLH-DMDEFVQSQLI 116 (286)
Q Consensus 39 ~~~g~~VLDLgaaPGsw-Sq~map~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDgap~~tG~~-~~D~~~~~~L~ 116 (286)
+++|.+||=.|+|+-+- +..++...|+.++..+..+.. . ++.+.++ +|.|+..-.....+.. .++. .-.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~-~-~~a~~~G---a~~vi~~~~~~~~~~d~~i~~----~~~ 233 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAA-R-RLALALG---AASAGGAYDTPPEPLDAAILF----APA 233 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHH-H-HHHHHhC---CceeccccccCcccceEEEEC----CCc
Confidence 57899999999754331 123444457776666655433 2 2333332 4444321000000100 0000 001
Q ss_pred HHHHHHHHhcccCCcEEEEEE
Q 023158 117 LAGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 117 ~aaL~~a~~vLkpGG~fV~Ki 137 (286)
-..+..+.+.|++||++++-=
T Consensus 234 ~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 234 GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred HHHHHHHHHhhCCCcEEEEEe
Confidence 235677889999999998643
No 366
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=22.67 E-value=2.4e+02 Score=28.88 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=32.3
Q ss_pred CCCchHHHHHHHhCchhHHHHHHHHHHHHcCCc----------CCCCEEEEEccccccccc
Q 023158 7 DKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF----------EGVKRVVDLCAAPGSWSQ 57 (286)
Q Consensus 7 ~~rD~y~r~Ak~~g~raRsa~KL~eId~~f~l~----------~~g~~VLDLgaaPGswSq 57 (286)
++-|.+...+.-.|||+ .++.-..|.-+ .++.+|+=+|||+=|...
T Consensus 124 q~~d~lssma~iAGy~A-----vi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~A 179 (511)
T TIGR00561 124 QKLDALSSMANIAGYRA-----IIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAA 179 (511)
T ss_pred CccCcchhhHHHHHHHH-----HHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHH
Confidence 77888888999999987 33333333321 245799999999877655
No 367
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=22.51 E-value=5.3e+02 Score=22.82 Aligned_cols=16 Identities=25% Similarity=0.275 Sum_probs=12.8
Q ss_pred HHHHHhcccCCcEEEE
Q 023158 120 LTVVTHVLKEGGKFIA 135 (286)
Q Consensus 120 L~~a~~vLkpGG~fV~ 135 (286)
+..+.+.|+++|+|+.
T Consensus 221 ~~~~~~~l~~~g~~v~ 236 (320)
T cd08243 221 LKDSLRHLRPGGIVCM 236 (320)
T ss_pred HHHHHHHhccCCEEEE
Confidence 4566789999999874
No 368
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=21.39 E-value=1.8e+02 Score=28.19 Aligned_cols=34 Identities=26% Similarity=0.272 Sum_probs=26.4
Q ss_pred CCCcEEEEeeCCChhhHHHHHHhcCCCCccEEEeCCC
Q 023158 62 IEGVIQVQGDITNARTAEVVIRHFDGCKADLVVCDGA 98 (286)
Q Consensus 62 ~~gv~~i~gDIt~~~~~~~i~~~l~~~~~DlVlsDga 98 (286)
-|...|++|||.+...+.++... ...|.|+.-+|
T Consensus 50 ~~~~~fv~~DI~D~~~v~~~~~~---~~~D~VvhfAA 83 (340)
T COG1088 50 SPRYRFVQGDICDRELVDRLFKE---YQPDAVVHFAA 83 (340)
T ss_pred CCCceEEeccccCHHHHHHHHHh---cCCCeEEEech
Confidence 35789999999998776666544 36899998776
No 369
>PRK12744 short chain dehydrogenase; Provisional
Probab=21.12 E-value=3.4e+02 Score=23.77 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=24.5
Q ss_pred CcEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
.+.++++|+++.+.++++.+... .+++|+|++..+
T Consensus 62 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag 98 (257)
T PRK12744 62 KAVAFQADLTTAAAVEKLFDDAKAAFGRPDIAINTVG 98 (257)
T ss_pred cEEEEecCcCCHHHHHHHHHHHHHhhCCCCEEEECCc
Confidence 46788999999877655543321 146999998865
No 370
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=20.97 E-value=5.2e+02 Score=23.18 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=15.7
Q ss_pred HHHHHHHhcccCCcEEEEEE
Q 023158 118 AGLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 118 aaL~~a~~vLkpGG~fV~Ki 137 (286)
.++..+.+.|++||++++--
T Consensus 199 ~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 199 AAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred HHHHHHHHHhcCCCEEEEec
Confidence 35677889999999998643
No 371
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.92 E-value=2.4e+02 Score=25.13 Aligned_cols=34 Identities=9% Similarity=0.032 Sum_probs=23.4
Q ss_pred cEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 65 VIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 65 v~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
...+++|+++++..+.+.+... -+++|+++....
T Consensus 58 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG 93 (260)
T PRK06997 58 DLVFPCDVASDEQIDALFASLGQHWDGLDGLVHSIG 93 (260)
T ss_pred cceeeccCCCHHHHHHHHHHHHHHhCCCcEEEEccc
Confidence 3467899999877665544331 147999998864
No 372
>PRK06500 short chain dehydrogenase; Provisional
Probab=20.67 E-value=3.4e+02 Score=23.33 Aligned_cols=35 Identities=9% Similarity=0.192 Sum_probs=23.1
Q ss_pred CcEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCC
Q 023158 64 GVIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGA 98 (286)
Q Consensus 64 gv~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDga 98 (286)
.+.++++|+++......+.+.+. .+++|.|+...+
T Consensus 53 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag 89 (249)
T PRK06500 53 SALVIRADAGDVAAQKALAQALAEAFGRLDAVFINAG 89 (249)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence 36778999999866544433221 146999988764
No 373
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=20.66 E-value=2.1e+02 Score=27.38 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=14.8
Q ss_pred HHHHHHhcccCCcEEEEE
Q 023158 119 GLTVVTHVLKEGGKFIAK 136 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~K 136 (286)
++..+.+.|++||++|.-
T Consensus 255 ~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 255 ALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred HHHHHHHhhcCCCEEEEE
Confidence 567788899999999854
No 374
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=20.56 E-value=1.5e+02 Score=23.02 Aligned_cols=38 Identities=26% Similarity=0.454 Sum_probs=23.5
Q ss_pred CCCccEEEeCCCCCCCCCCcccHHHHHHHHHHHHHHHHhcccCCcEEEEEEc
Q 023158 87 GCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTVVTHVLKEGGKFIAKIF 138 (286)
Q Consensus 87 ~~~~DlVlsDgap~~tG~~~~D~~~~~~L~~aaL~~a~~vLkpGG~fV~Kif 138 (286)
|..+|+++.|..- |+ + -.+|..+...++-||.+|+-+-
T Consensus 9 G~e~~~~i~d~~~---g~---~--------pnal~a~~gtv~gGGllill~p 46 (92)
T PF08351_consen 9 GQEFDLLIFDAFE---GF---D--------PNALAALAGTVRGGGLLILLLP 46 (92)
T ss_dssp T--BSSEEEE-SS-----------------HHHHHHHHTTB-TT-EEEEEES
T ss_pred CCccCEEEEEccC---CC---C--------HHHHHHHhcceecCeEEEEEcC
Confidence 4679999999732 22 2 3577888899999999997653
No 375
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=20.49 E-value=50 Score=31.66 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=18.1
Q ss_pred HHHHHHHHhcccCCcEEEEEEcc
Q 023158 117 LAGLTVVTHVLKEGGKFIAKIFR 139 (286)
Q Consensus 117 ~aaL~~a~~vLkpGG~fV~Kif~ 139 (286)
..-|..-.+=|+|||.||+-++.
T Consensus 163 ~~FL~~Ra~ELv~GG~mvl~~~g 185 (334)
T PF03492_consen 163 SSFLKARAEELVPGGRMVLTFLG 185 (334)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHhhheeccCcEEEEEEee
Confidence 44466667889999999998874
No 376
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=20.46 E-value=4.9e+02 Score=23.26 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.4
Q ss_pred HHHhcccCCcEEEE
Q 023158 122 VVTHVLKEGGKFIA 135 (286)
Q Consensus 122 ~a~~vLkpGG~fV~ 135 (286)
.+.+.|+++|+++.
T Consensus 222 ~~~~~l~~~g~~v~ 235 (323)
T cd05282 222 RLARSLRPGGTLVN 235 (323)
T ss_pred HHHHhhCCCCEEEE
Confidence 45678999999985
No 377
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=20.44 E-value=3.5e+02 Score=25.42 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=13.7
Q ss_pred HHHHHHhcccCCcEEEE
Q 023158 119 GLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~ 135 (286)
.+..+.+.|+++|++|.
T Consensus 267 ~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 267 VIEQAVDALAPRGTLAL 283 (365)
T ss_pred HHHHHHHHhccCCEEEE
Confidence 35677889999999885
No 378
>PRK07326 short chain dehydrogenase; Provisional
Probab=20.20 E-value=3.9e+02 Score=22.81 Aligned_cols=37 Identities=8% Similarity=0.181 Sum_probs=24.8
Q ss_pred CCcEEEEeeCCChhhHHHHHHhcC--CCCccEEEeCCCC
Q 023158 63 EGVIQVQGDITNARTAEVVIRHFD--GCKADLVVCDGAP 99 (286)
Q Consensus 63 ~gv~~i~gDIt~~~~~~~i~~~l~--~~~~DlVlsDgap 99 (286)
.+++++++|+++........+.+. .+.+|.|+...++
T Consensus 54 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 54 GNVLGLAADVRDEADVQRAVDAIVAAFGGLDVLIANAGV 92 (237)
T ss_pred CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 457889999999876554433221 1369999987654
No 379
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=20.12 E-value=3.5e+02 Score=24.64 Aligned_cols=17 Identities=12% Similarity=0.434 Sum_probs=13.4
Q ss_pred HHHHHHhcccCCcEEEE
Q 023158 119 GLTVVTHVLKEGGKFIA 135 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~ 135 (286)
.+..+.+.|+++|+||.
T Consensus 247 ~~~~~~~~l~~~g~~v~ 263 (343)
T cd08235 247 AQAQALELVRKGGRILF 263 (343)
T ss_pred HHHHHHHHhhcCCEEEE
Confidence 45566788999999985
No 380
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=20.03 E-value=4.9e+02 Score=24.24 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=14.5
Q ss_pred HHHHHHhcccCCcEEEEEE
Q 023158 119 GLTVVTHVLKEGGKFIAKI 137 (286)
Q Consensus 119 aL~~a~~vLkpGG~fV~Ki 137 (286)
.+..+.+.|+++|+||.--
T Consensus 269 ~~~~~~~~l~~~G~~v~~g 287 (367)
T cd08263 269 TFKLALDVVRDGGRAVVVG 287 (367)
T ss_pred HHHHHHHHHhcCCEEEEEc
Confidence 3456778999999998653
Done!