Citrus Sinensis ID: 023162

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHccccccccccEEEEHHHHHHHHHHHHHHHHHccccccc
ccccHHHEEEcccccccccccccccccccccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHEccccccccccHHHHHHHHHHHHHHHHHHccccccccc
MEGKEEDVRLGankfaerqpigtaaqtqdgkdyvepppaplfepgelkswsFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTagisgghinpaVTLGLFLARKLSLTRALFYMVMQCLGAICgagvvkgfmgagqygrlagganvvahgytkgdglgaEIIGTFVLVYTVFSatdakrsardshvpilaplpIGFAVFLVHLAtipitgtginparslGAAIIynkdrgwddhwifwVGPFVGAGLAALYHQVVIRAIPFK
megkeedvrlgankfaerqpigtaaqtqdgkdyVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITgtginparSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK
MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK
********************************************GELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAI***
***************************************PLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPF*
********RLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK
*******V**********************KDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIP**
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRRooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query286 2.2.26 [Sep-21-2011]
Q7XSQ9288 Probable aquaporin PIP1-2 yes no 0.996 0.989 0.881 1e-145
Q6EU94289 Aquaporin PIP1-1 OS=Oryza no no 0.996 0.986 0.867 1e-143
Q9XF59289 Aquaporin PIP1-2 OS=Zea m N/A no 0.996 0.986 0.864 1e-143
Q39196287 Probable aquaporin PIP1-4 yes no 0.993 0.989 0.874 1e-143
P25794289 Probable aquaporin PIP-ty N/A no 1.0 0.989 0.860 1e-142
Q06611286 Aquaporin PIP1-2 OS=Arabi no no 0.989 0.989 0.853 1e-140
Q9AR14288 Aquaporin PIP1-5 OS=Zea m N/A no 0.996 0.989 0.846 1e-140
Q08451286 Probable aquaporin PIP-ty N/A no 0.982 0.982 0.845 1e-138
Q9AQU5292 Aquaporin PIP1-3/PIP1-4 O N/A no 0.996 0.976 0.855 1e-138
Q9SXF8288 Aquaporin PIP 1-3 OS=Oryz no no 0.996 0.989 0.835 1e-136
>sp|Q7XSQ9|PIP12_ORYSJ Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3 Back     alignment and function desciption
 Score =  513 bits (1322), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 252/286 (88%), Positives = 264/286 (92%), Gaps = 1/286 (0%)

Query: 1   MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEF 60
           MEGKEEDVRLGANKF+ERQPIGTAAQ  D KDY EPPPAPLFEPGELKSWSFYRAGIAEF
Sbjct: 1   MEGKEEDVRLGANKFSERQPIGTAAQGSDDKDYKEPPPAPLFEPGELKSWSFYRAGIAEF 60

Query: 61  IATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVT 120
           +ATFLFLYI+VLTVMGV  S +KC+TVGIQGIAW+FGGMIF LVYCTAGISGGHINPAVT
Sbjct: 61  MATFLFLYITVLTVMGVNNSTSKCATVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVT 120

Query: 121 LGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG 180
            GLFLARKLSLTRALFYMVMQCLGAICGAGVVKGF   G Y    GGANVVA GYTKGDG
Sbjct: 121 FGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFQ-KGLYETTGGGANVVAPGYTKGDG 179

Query: 181 LGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 240
           LGAEI+GTF+LVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA
Sbjct: 180 LGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 239

Query: 241 RSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 286
           RSLGAAIIYN+   WDDHWIFWVGPF+GA LAA+YHQVVIRAIPFK
Sbjct: 240 RSLGAAIIYNRGHAWDDHWIFWVGPFIGAALAAIYHQVVIRAIPFK 285
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q6EU94|PIP11_ORYSJ Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XF59|PIP12_MAIZE Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q39196|PIP14_ARATH Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1 Back     alignment and function description
>sp|P25794|PIP2_PEA Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2 Back     alignment and function description
>sp|Q06611|PIP12_ARATH Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1 Back     alignment and function description
>sp|Q9AR14|PIP15_MAIZE Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1 Back     alignment and function description
>sp|Q08451|PIP1_SOLLC Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|Q9AQU5|PIP13_MAIZE Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SXF8|PIP13_ORYSJ Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
256568419288 PIP protein [Gossypium hirsutum] gi|2565 1.0 0.993 0.898 1e-149
255571849288 Aquaporin PIP1.3, putative [Ricinus comm 1.0 0.993 0.912 1e-149
255571847287 Aquaporin PIP1.3, putative [Ricinus comm 1.0 0.996 0.909 1e-148
219523020287 plasma membrane intrinsic protein 1 [Pop 1.0 0.996 0.895 1e-147
335954641289 plasma membrane intrinsic protein 1 [Jat 1.0 0.989 0.905 1e-147
300793590288 TPA_inf: aquaporin PIP1;7 [Gossypium hir 1.0 0.993 0.895 1e-147
378408539290 plasma intrinsic protein PIP1.1 [Heliant 1.0 0.986 0.892 1e-147
224101113287 aquaporin, MIP family, PIP subfamily [Po 1.0 0.996 0.891 1e-146
224109360287 aquaporin, MIP family, PIP subfamily [Po 1.0 0.996 0.884 1e-146
238814670290 plasma intrinsic protein 1;2 [Juglans re 1.0 0.986 0.899 1e-146
>gi|256568419|gb|ACU87553.1| PIP protein [Gossypium hirsutum] gi|256568421|gb|ACU87554.1| PIP protein [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 257/286 (89%), Positives = 269/286 (94%)

Query: 1   MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEF 60
           MEGKEEDVRLGANKF+ERQPIGTAAQ+QD KDY EPPPAPLFEP EL SWSFYRAGIAEF
Sbjct: 1   MEGKEEDVRLGANKFSERQPIGTAAQSQDDKDYTEPPPAPLFEPSELTSWSFYRAGIAEF 60

Query: 61  IATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVT 120
           +ATFLFLYISVLTVMGV+K  TKC+TVGIQGIAWAFGGMIF LVYCTAGISGGHINPAVT
Sbjct: 61  VATFLFLYISVLTVMGVLKDKTKCTTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 120

Query: 121 LGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG 180
            GLFL RKLSLTRA++YMVMQCLGAICGAGVVKGFMG  +YG L GGAN V HGYTKGDG
Sbjct: 121 FGLFLGRKLSLTRAIYYMVMQCLGAICGAGVVKGFMGKTRYGALGGGANSVNHGYTKGDG 180

Query: 181 LGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 240
           LGAEI+GTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA
Sbjct: 181 LGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 240

Query: 241 RSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 286
           RSLGAAII+NKD+GWDDHWIFWVGPF+GA LAALYH VVIRAIPFK
Sbjct: 241 RSLGAAIIFNKDKGWDDHWIFWVGPFIGAALAALYHVVVIRAIPFK 286

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255571849|ref|XP_002526867.1| Aquaporin PIP1.3, putative [Ricinus communis] gi|38198152|emb|CAE53882.1| aquaporin [Ricinus communis] gi|223533766|gb|EEF35498.1| Aquaporin PIP1.3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255571847|ref|XP_002526866.1| Aquaporin PIP1.3, putative [Ricinus communis] gi|223533765|gb|EEF35497.1| Aquaporin PIP1.3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|219523020|gb|ACL14797.1| plasma membrane intrinsic protein 1 [Populus alba x Populus tremula var. glandulosa] Back     alignment and taxonomy information
>gi|335954641|gb|AEH76327.1| plasma membrane intrinsic protein 1 [Jatropha curcas] Back     alignment and taxonomy information
>gi|300793590|tpg|DAA33861.1| TPA_inf: aquaporin PIP1;7 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|378408539|gb|AFB83065.1| plasma intrinsic protein PIP1.1 [Helianthemum almeriense] Back     alignment and taxonomy information
>gi|224101113|ref|XP_002312147.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|118489357|gb|ABK96483.1| unknown [Populus trichocarpa x Populus deltoides] gi|222851967|gb|EEE89514.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224109360|ref|XP_002315171.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] gi|118486523|gb|ABK95101.1| unknown [Populus trichocarpa] gi|222864211|gb|EEF01342.1| aquaporin, MIP family, PIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|238814670|gb|ACR56611.1| plasma intrinsic protein 1;2 [Juglans regia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
TAIR|locus:2117939287 PIP1;5 "plasma membrane intrin 0.993 0.989 0.874 6.9e-134
TAIR|locus:2126026287 PIP1;4 "plasma membrane intrin 0.993 0.989 0.874 8.8e-134
TAIR|locus:2025391286 PIP1C "plasma membrane intrins 0.989 0.989 0.870 1.3e-132
TAIR|locus:2082822286 PIP1A "plasma membrane intrins 0.989 0.989 0.863 1.5e-131
TAIR|locus:2050649301 PIP1B "plasma membrane intrins 0.891 0.847 0.856 2.7e-116
TAIR|locus:2131601280 PIP3 "plasma membrane intrinsi 0.926 0.946 0.736 1.2e-104
TAIR|locus:2039385278 PIP2;8 "plasma membrane intrin 0.895 0.920 0.758 2.9e-103
TAIR|locus:2084031287 PIP2A "plasma membrane intrins 0.923 0.919 0.712 4.9e-101
TAIR|locus:2061773285 PIP2B "plasma membrane intrins 0.877 0.880 0.732 2.7e-100
TAIR|locus:2082642286 PIP2;5 "plasma membrane intrin 0.877 0.877 0.723 5e-99
TAIR|locus:2117939 PIP1;5 "plasma membrane intrinsic protein 1;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1312 (466.9 bits), Expect = 6.9e-134, P = 6.9e-134
 Identities = 250/286 (87%), Positives = 262/286 (91%)

Query:     1 MEGKEEDVRLGANKFAERQPIGTAAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEF 60
             MEGKEEDV +GANKF ERQPIGTAAQT+  KDY EPPPAP FEPGELKSWSFYRAGIAEF
Sbjct:     1 MEGKEEDVNVGANKFPERQPIGTAAQTES-KDYKEPPPAPFFEPGELKSWSFYRAGIAEF 59

Query:    61 IATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVT 120
             IATFLFLY++VLTVMGV ++   C++VGIQGIAWAFGGMIF LVYCTAGISGGHINPAVT
Sbjct:    60 IATFLFLYVTVLTVMGVKRAPNMCASVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVT 119

Query:   121 LGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDG 180
              GLFLARKLSLTRALFY+VMQCLGAICGAGVVKGF   G Y    GGANVVAHGYTKG G
Sbjct:   120 FGLFLARKLSLTRALFYIVMQCLGAICGAGVVKGFQ-PGLYQTNGGGANVVAHGYTKGSG 178

Query:   181 LGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 240
             LGAEI+GTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA
Sbjct:   179 LGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPA 238

Query:   241 RSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 286
             RSLGAAIIYNKD  WDDHWIFWVGPF+GA LAALYHQ+VIRAIPFK
Sbjct:   239 RSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFK 284
GO:0005215 "transporter activity" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA;RCA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006096 "glycolysis" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2126026 PIP1;4 "plasma membrane intrinsic protein 1;4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025391 PIP1C "plasma membrane intrinsic protein 1C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082822 PIP1A "plasma membrane intrinsic protein 1A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050649 PIP1B "plasma membrane intrinsic protein 1B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131601 PIP3 "plasma membrane intrinsic protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039385 PIP2;8 "plasma membrane intrinsic protein 2;8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084031 PIP2A "plasma membrane intrinsic protein 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061773 PIP2B "plasma membrane intrinsic protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082642 PIP2;5 "plasma membrane intrinsic protein 2;5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q7XSQ9PIP12_ORYSJNo assigned EC number0.88110.99650.9895yesno
Q8LAA6PIP15_ARATHNo assigned EC number0.87410.99300.9895nono
P93004PIP27_ARATHNo assigned EC number0.73130.93350.9535nono
Q9SV31PIP25_ARATHNo assigned EC number0.71210.89160.8916nono
P43287PIP22_ARATHNo assigned EC number0.73250.87760.8807nono
Q9SXF8PIP13_ORYSJNo assigned EC number0.83560.99650.9895nono
Q84RL7PIP21_MAIZENo assigned EC number0.73070.87760.8655N/Ano
P30302PIP23_ARATHNo assigned EC number0.72090.87760.8807nono
Q9AQU5PIP13_MAIZENo assigned EC number0.85510.99650.9760N/Ano
Q9AR14PIP15_MAIZENo assigned EC number0.84610.99650.9895N/Ano
Q9ATM5PIP26_MAIZENo assigned EC number0.71150.87760.8715N/Ano
P61837PIP11_ARATHNo assigned EC number0.86360.98950.9895nono
Q08451PIP1_SOLLCNo assigned EC number0.84500.98250.9825N/Ano
Q9FF53PIP24_ARATHNo assigned EC number0.70340.88810.8728nono
P61838PIP11_VICFANo assigned EC number0.86360.98950.9895N/Ano
P42767PIP1_ATRCANo assigned EC number0.76440.90200.9148N/Ano
Q06611PIP12_ARATHNo assigned EC number0.85310.98950.9895nono
Q9ATN0PIP16_MAIZENo assigned EC number0.79290.98950.9560N/Ano
Q6K215PIP22_ORYSJNo assigned EC number0.72300.87760.8715nono
Q39196PIP14_ARATHNo assigned EC number0.87410.99300.9895yesno
Q41870PIP11_MAIZENo assigned EC number0.82860.99300.9895N/Ano
P43286PIP21_ARATHNo assigned EC number0.73640.87760.8745nono
Q7XUA6PIP23_ORYSJNo assigned EC number0.71150.87760.8655nono
Q9XF59PIP12_MAIZENo assigned EC number0.86410.99650.9861N/Ano
Q9XF58PIP25_MAIZENo assigned EC number0.71530.90200.9052N/Ano
Q08733PIP13_ARATHNo assigned EC number0.87060.98950.9895yesno
Q9ATM8PIP22_MAIZENo assigned EC number0.70990.87760.8595N/Ano
P25794PIP2_PEANo assigned EC number0.86061.00.9896N/Ano
Q9ATM4PIP27_MAIZENo assigned EC number0.70340.89160.8885N/Ano
Q7XLR1PIP26_ORYSJNo assigned EC number0.72480.89160.9042nono
Q9ATM6PIP24_MAIZENo assigned EC number0.71370.90900.9027N/Ano
Q9ATM7PIP23_MAIZENo assigned EC number0.71370.90900.8996N/Ano
Q6EU94PIP11_ORYSJNo assigned EC number0.86750.99650.9861nono
Q9ZVX8PIP28_ARATHNo assigned EC number0.74710.90900.9352nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
pfam00230218 pfam00230, MIP, Major intrinsic protein 6e-96
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 3e-77
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 6e-69
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 2e-46
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 1e-34
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 2e-32
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 2e-31
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 2e-27
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 2e-23
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 3e-21
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 1e-18
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 2e-18
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 2e-15
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 2e-04
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 4e-04
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information 
 Score =  281 bits (721), Expect = 6e-96
 Identities = 119/231 (51%), Positives = 149/231 (64%), Gaps = 13/231 (5%)

Query: 46  ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVY 105
           EL+S SF+RA IAEF+AT LF++  V + +GV K        G+  +A AFG  +F LVY
Sbjct: 1   ELRSVSFWRAVIAEFLATLLFVFFGVGSALGVKKL-----YGGLLAVALAFGLALFTLVY 55

Query: 106 CTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 165
           CT  ISG H+NPAVT  L + R++SL RA++Y++ Q LGAICGA ++KG     Q  R  
Sbjct: 56  CTGHISGAHLNPAVTFALLVGRRISLLRAIYYIIAQLLGAICGAALLKGVTNGLQ--RAG 113

Query: 166 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLV 225
           G AN +A G   G     EII TF LVYTVF+ TD  R+    HV   APL IGFAVFL 
Sbjct: 114 GFANSLAPGVNAGQAFVVEIILTFQLVYTVFATTDDPRNGSLGHV---APLAIGFAVFLN 170

Query: 226 HLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYH 276
           HLA  P TG  +NPARS G A++  K   WDDHW++WVGP +GA LAAL +
Sbjct: 171 HLAGGPYTGASMNPARSFGPAVVLWK---WDDHWVYWVGPLIGAALAALVY 218

MIP (Major Intrinsic Protein) family proteins exhibit essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Length = 218
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 286
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00184296 aquaporin NIP1; Provisional 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.84
PLN00182283 putative aquaporin NIP4; Provisional 99.82
PLN00026298 aquaporin NIP; Provisional 99.81
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.78
PLN00183274 putative aquaporin NIP7; Provisional 99.78
PLN00184296 aquaporin NIP1; Provisional 99.77
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.76
PLN00166250 aquaporin TIP2; Provisional 99.73
PRK05420231 aquaporin Z; Provisional 99.73
PLN00027252 aquaporin TIP; Provisional 99.72
PLN00167256 aquaporin TIP5; Provisional 99.7
PTZ00016294 aquaglyceroporin; Provisional 99.69
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.67
COG0580241 GlpF Glycerol uptake facilitator and related perme 99.63
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.17
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7.3e-48  Score=335.54  Aligned_cols=224  Identities=54%  Similarity=0.805  Sum_probs=197.1

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccChHHHHHHHH
Q 023162           46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFL  125 (286)
Q Consensus        46 ~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~sGah~NPavtl~~~~  125 (286)
                      +....+.+|++++||++|++++|.+|+.......   .....+.+.+++++|+.++..+++++++||||+|||+|++.++
T Consensus         4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~---~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~   80 (238)
T KOG0223|consen    4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPK---YGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAV   80 (238)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHH
Confidence            3456788999999999999999999987765443   2233456788999999999999999999999999999999999


Q ss_pred             hcCCccchhHHHHHHHhHHHHHHHHHHHHHhccccccccCCccceecCCCCCcchhHHHHHHHHHHHHHHHH-hcccccc
Q 023162          126 ARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFS-ATDAKRS  204 (286)
Q Consensus       126 ~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~il~-~~~~~~~  204 (286)
                      .+++++.+...||++|++|+++|+.+.+.+.+. .....+...+...++.+.+++++.|++.||.|+++++. .+|++++
T Consensus        81 ~~~isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~  159 (238)
T KOG0223|consen   81 GGKISLFRAVAYIVAQLLGAIAGAALLKVVTPG-QYNRKGLGLTGLAPGLSTGQGLVIEIILTFILVFTVFATATDPRRS  159 (238)
T ss_pred             hCCCcHHHhHHHHHHHHHHHHHHHHHHheecCc-ccccCCcceeccCCCCCcchhHHHHHHHHHHHhheeEEEeecCCCc
Confidence            999999999999999999999999999999944 33333334556778889999999999999999999999 7666654


Q ss_pred             CCCCCCCchhhHHHHHHHHHHHHHhhCCCCCccchHhhHHHHHHhCCCCCCCcceecchhhHHHHHHHHHHHHHHhccc
Q 023162          205 ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAI  283 (286)
Q Consensus       205 ~~~~~~~~~~~~~igl~v~~~~~~~~~~sG~~lNPAr~~g~~~~~~~~~~w~~~wvy~v~P~~Ga~~aa~~~~~~~~~~  283 (286)
                             .+.|+.||+++.+.+++.++.||++|||||+|||+++++   .|+++|+||++|++|+++++++||+++...
T Consensus       160 -------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvgP~~Ga~~a~~~y~~v~~~~  228 (238)
T KOG0223|consen  160 -------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVGPLLGAILAALIYRLVFIPD  228 (238)
T ss_pred             -------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhhHHHHHHHHHHHHHHhccCc
Confidence                   478999999999999999999999999999999999975   499999999999999999999999988765

>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-112
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-112
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-112
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-111
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-111
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 2e-43
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 3e-42
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 2e-37
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 4e-37
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 4e-37
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 2e-35
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 2e-32
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 2e-30
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 3e-30
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 1e-28
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 6e-28
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 7e-20
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 1e-17
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 1e-17
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 1e-17
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 3e-17
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 4e-17
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 5e-17
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 1e-15
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 3e-15
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 5e-15
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 7e-12
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 1e-10
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 4e-09
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 7e-08
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure 
Iteration: 1

 Score =  401 bits (1031), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/263 (75%), Positives = 217/263 (82%), Gaps = 1/263 (0%)
Query: 24  AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
           A   Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G  K    
Sbjct: 9   AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 68
Query: 84  CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
           C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL YM+ QCL
Sbjct: 69  CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 128
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
           GAICG G+VK FM  G Y +  GGAN VA GY KG  LGAEIIGTFVLVYTVFSATD KR
Sbjct: 129 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 187
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWV 263
           SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD WIFWV
Sbjct: 188 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 247
Query: 264 GPFVGAGLAALYHQVVIRAIPFK 286
           GPF+GA +AA YHQ V+RA   K
Sbjct: 248 GPFIGAAVAAAYHQYVLRAAAIK 270
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-134
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 1e-113
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 1e-104
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 1e-102
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 1e-101
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-101
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-101
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 1e-100
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-97
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 4e-97
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 4e-77
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 4e-49
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 6e-04
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 1e-48
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 6e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
 Score =  382 bits (982), Expect = e-134
 Identities = 198/271 (73%), Positives = 219/271 (80%), Gaps = 2/271 (0%)

Query: 17  ERQPIGTAAQT-QDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVM 75
             + +   AQ  Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+
Sbjct: 24  MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVI 83

Query: 76  GVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRAL 135
           G  K    C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+ L RAL
Sbjct: 84  GHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRAL 143

Query: 136 FYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTV 195
            YM+ QCLGAICG G+VK FM  G Y +  GGAN VA GY KG  LGAEIIGTFVLVYTV
Sbjct: 144 VYMIAQCLGAICGVGLVKAFMK-GPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTV 202

Query: 196 FSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW 255
           FSATD KRSARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ W
Sbjct: 203 FSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVW 262

Query: 256 DDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 286
           DD WIFWVGPF+GA +AA YHQ V+RA   K
Sbjct: 263 DDQWIFWVGPFIGAAVAAAYHQYVLRAAAIK 293
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.84
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.79
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 99.79
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.78
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.77
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.77
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.77
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 99.77
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.77
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 99.76
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 99.75
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 99.69
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 99.69
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
Probab=100.00  E-value=2.2e-53  Score=383.73  Aligned_cols=254  Identities=76%  Similarity=1.325  Sum_probs=205.1

Q ss_pred             cccccCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCCchhHHHHHHHHHHHHHHHhhcC
Q 023162           30 GKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAG  109 (286)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~  109 (286)
                      .|++.+|++.+..+.++..+++++|++++||+||++|+++++++.++.....++....+.+.+++++|+.+++.++++++
T Consensus        38 ~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~  117 (304)
T 3cn5_A           38 GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAG  117 (304)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeec
Confidence            37777776666677788889999999999999999999999988776543333334556788899999999999999999


Q ss_pred             ccccccChHHHHHHHHhcCCccchhHHHHHHHhHHHHHHHHHHHHHhccccccccCCccceecCCCCCcchhHHHHHHHH
Q 023162          110 ISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTF  189 (286)
Q Consensus       110 ~sGah~NPavtl~~~~~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~T~  189 (286)
                      +||+|+|||||++.++.++++|.+.+.|+++|++|+++|+.+++.++ ++.++..+.+.+.+.++++..++++.|+++||
T Consensus       118 iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~-~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf  196 (304)
T 3cn5_A          118 ISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTF  196 (304)
T ss_dssp             TTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHTTTTCCCCCTTCCHHHHHHHHHHHHH
T ss_pred             cCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccCcccccCCCccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998 44454444444445667788999999999999


Q ss_pred             HHHHHHHHhccccccCCCCCCCchhhHHHHHHHHHHHHHhhCCCCCccchHhhHHHHHHhCCCCCCCcceecchhhHHHH
Q 023162          190 VLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGA  269 (286)
Q Consensus       190 ~Lv~~il~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~sG~~lNPAr~~g~~~~~~~~~~w~~~wvy~v~P~~Ga  269 (286)
                      +|+++++.++|+++..+.++.+.+.|+.||+.+.++.++.+++||++|||||||||+++++++..|+++|+||++|++|+
T Consensus       197 iLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiGa  276 (304)
T 3cn5_A          197 VLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGA  276 (304)
T ss_dssp             HHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHHH
Confidence            99999998888765543322345889999999999999999999999999999999999654458999999999999999


Q ss_pred             HHHHHHHHHHhcccC
Q 023162          270 GLAALYHQVVIRAIP  284 (286)
Q Consensus       270 ~~aa~~~~~~~~~~~  284 (286)
                      ++|+++|++++...+
T Consensus       277 ~laa~~y~~l~~~~~  291 (304)
T 3cn5_A          277 AVAAAYHQYVLRAAA  291 (304)
T ss_dssp             HHHHHHHHTTSCCCC
T ss_pred             HHHHHHHHHHhCCCC
Confidence            999999999887554
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 286
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 3e-53
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 0.003
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 3e-48
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 1e-40
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 0.003
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 8e-39
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-1
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  171 bits (435), Expect = 3e-53
 Identities = 99/239 (41%), Positives = 138/239 (57%), Gaps = 13/239 (5%)

Query: 46  ELKSWSFYRAGIAEFIATFLFLYISVLTVMG----VVKSNTKCSTVGIQGIAWAFGGMIF 101
           E K   F+RA +AEF+A  LF++IS+ + +G    +  + T  +      ++ AFG  I 
Sbjct: 4   EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63

Query: 102 VLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQY 161
            L      ISG H+NPAVTLGL L+ ++S+ RA+ Y++ QC+GAI    ++ G   +   
Sbjct: 64  TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD 123

Query: 162 GRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFA 221
             L  G N +A G   G GLG EIIGT  LV  V + TD +R      +    PL IGF+
Sbjct: 124 NSL--GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRD----LGGSGPLAIGFS 177

Query: 222 VFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 280
           V L HL  I  TG GINPARS G+++I +    + DHWIFWVGPF+GA LA L +  ++
Sbjct: 178 VALGHLLAIDYTGCGINPARSFGSSVITH---NFQDHWIFWVGPFIGAALAVLIYDFIL 233
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.74
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.72
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.7
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.69
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Glycerol uptake facilitator protein GlpF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.6e-47  Score=336.47  Aligned_cols=226  Identities=27%  Similarity=0.372  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCCchhHHHHHHHHHHHHHHHhhcCccccccChHHHHHHHHhcCCcc
Q 023162           52 FYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSL  131 (286)
Q Consensus        52 ~~~~~~~E~igT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~sGah~NPavtl~~~~~~~~~~  131 (286)
                      +.|++++||+||++|+|.++++.......+.   ..+.+.+++++|+.+++.+++++++||+|+|||||++.++.++++|
T Consensus         2 l~~~~lAEflGT~~lvf~g~g~~~~~~~~~~---~~~~~~ia~~~g~~v~~~i~~~g~vSGaH~NPAVTla~~i~g~~~~   78 (254)
T d1fx8a_           2 LKGQCIAEFLGTGLLIFFGVGCVAALKVAGA---SFGQWEISVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDK   78 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCG
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhccccCC---CcchHHHHHHHHHHHHHHHHHHhccccceEChhhHHHHHHcCCCcH
Confidence            5789999999999999999887665444332   3355677999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHhHHHHHHHHHHHHHhccccccc----------------cCCccceecCCCCCcchhHHHHHHHHHHHHHH
Q 023162          132 TRALFYMVMQCLGAICGAGVVKGFMGAGQYGR----------------LAGGANVVAHGYTKGDGLGAEIIGTFVLVYTV  195 (286)
Q Consensus       132 ~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~E~~~T~~Lv~~i  195 (286)
                      .+...|+++|++|+++|+++.+.++++...+.                .+...+.++++.+..++++.|+++|++|++++
T Consensus        79 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~s~~~~~~~E~v~Tf~lv~~i  158 (254)
T d1fx8a_          79 RKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLI  158 (254)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccCCccchhhcceeecCCCccccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998873321110                01123345567788999999999999999999


Q ss_pred             HHhccccccCCCCCCCchhhHHHHHHHHHHHHHhhCCCCCccchHhhHHHHHHh----------CCCCCCCcceecchhh
Q 023162          196 FSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIY----------NKDRGWDDHWIFWVGP  265 (286)
Q Consensus       196 l~~~~~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~sG~~lNPAr~~g~~~~~----------~~~~~w~~~wvy~v~P  265 (286)
                      +.+++++|+.++   +...|+.+|+.+...++..+++||++|||||||||+++.          .++.+|+++|+||++|
T Consensus       159 l~~~~~~~~~~~---~~~~~l~iG~~v~~~~~~~g~~TG~s~NPAR~lgpai~~~~~~~~~~~~~~~~~~~~~wvy~vgP  235 (254)
T d1fx8a_         159 LALTDDGNGVPR---GPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGP  235 (254)
T ss_dssp             HHHHCTTSSSCC---GGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHTT
T ss_pred             HHHhcCccCCCc---ccccchHHHHHHHHHHhhcccccccccChHHHHHHHHHHhhcccccccccCCCCCCeeehHhHHH
Confidence            999988765433   357899999999999999999999999999999999984          1346899999999999


Q ss_pred             HHHHHHHHHHHHHHhccc
Q 023162          266 FVGAGLAALYHQVVIRAI  283 (286)
Q Consensus       266 ~~Ga~~aa~~~~~~~~~~  283 (286)
                      ++|+++++++||+++..+
T Consensus       236 ~~Ga~ia~~~y~~l~~~~  253 (254)
T d1fx8a_         236 IVGAIVGAFAYRKLIGRH  253 (254)
T ss_dssp             HHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999999999998765
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure