Your job contains 1 sequence.
>023166
MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN
TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA
APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQM
PPPVYPGQGPPMARGPPPQGPPQGFGVRPPQQFPMPPQQFGQRPMVPPPPGPMMRGPPSG
PPRPGMPNAPPPRPGMPPPPGAPVFRPGMPPPPPNAQQQQQNQQQQ
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023166
(286 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2128610 - symbol:smB "small nuclear ribonucleo... 534 1.9e-51 1
TAIR|locus:2163416 - symbol:AT5G44500 "AT5G44500" species... 522 3.6e-50 1
UNIPROTKB|Q9PV94 - symbol:SNRPB "Small nuclear ribonucleo... 305 2.0e-32 3
ZFIN|ZDB-GENE-040426-1819 - symbol:snrpb "small nuclear r... 304 2.5e-32 3
UNIPROTKB|P14678 - symbol:SNRPB "Small nuclear ribonucleo... 304 2.5e-32 3
UNIPROTKB|Q9TU67 - symbol:SNRPB "Small nuclear ribonucleo... 304 2.5e-32 3
UNIPROTKB|Q58DW4 - symbol:SNRPB "Small nuclear ribonucleo... 304 2.5e-32 3
UNIPROTKB|Q9N1Q0 - symbol:SNRPB "Small nuclear ribonucleo... 304 5.1e-32 3
UNIPROTKB|Q9TU66 - symbol:SNRPB "Small nuclear ribonucleo... 295 2.2e-31 3
FB|FBgn0262601 - symbol:SmB "Small ribonucleoprotein part... 308 2.6e-30 2
UNIPROTKB|E2R1C4 - symbol:SNRPB "Small nuclear ribonucleo... 304 5.3e-30 2
MGI|MGI:98342 - symbol:Snrpb "small nuclear ribonucleopro... 304 5.3e-30 2
UNIPROTKB|Q17QN3 - symbol:SNRPN "Small nuclear ribonucleo... 301 1.4e-29 2
UNIPROTKB|I3LBT8 - symbol:SNRPN "Small nuclear ribonucleo... 301 1.8e-29 2
UNIPROTKB|E2RPQ0 - symbol:SNRPN "Small nuclear ribonucleo... 301 1.8e-29 2
UNIPROTKB|P63162 - symbol:SNRPN "Small nuclear ribonucleo... 301 1.8e-29 2
MGI|MGI:98347 - symbol:Snrpn "small nuclear ribonucleopro... 301 1.8e-29 2
RGD|621306 - symbol:Snrpn "small nuclear ribonucleoprotei... 301 1.8e-29 2
UNIPROTKB|G1K134 - symbol:Bt.57435 "Small nuclear ribonuc... 304 2.3e-29 2
UNIPROTKB|F1S891 - symbol:SNRPN "Small nuclear ribonucleo... 304 2.3e-29 2
DICTYBASE|DDB_G0272320 - symbol:snrpb "putative small nuc... 303 2.9e-29 2
UNIPROTKB|B3KVR1 - symbol:SNRPN "Small nuclear ribonucleo... 296 5.9e-29 2
UNIPROTKB|J3QLE5 - symbol:SNRPN "Small nuclear ribonucleo... 301 9.4e-27 1
UNIPROTKB|G4N0M9 - symbol:MGG_16920 "Uncharacterized prot... 265 2.7e-25 2
WB|WBGene00004915 - symbol:snr-2 species:6239 "Caenorhabd... 275 5.3e-24 1
UNIPROTKB|J9NT78 - symbol:SNRPB "Small nuclear ribonucleo... 239 2.6e-23 2
RGD|621301 - symbol:Snrpb "small nuclear ribonucleoprotei... 237 5.4e-23 2
GENEDB_PFALCIPARUM|PF14_0146 - symbol:PF14_0146 "ribonucl... 209 1.5e-19 2
UNIPROTKB|Q8ILU8 - symbol:PF14_0146 "Ribonucleoprotein, p... 209 1.5e-19 2
ASPGD|ASPL0000075585 - symbol:AN10561 species:162425 "Eme... 219 4.6e-18 1
POMBASE|SPAC26A3.08 - symbol:smb1 "Sm snRNP core protein ... 219 4.6e-18 1
SGD|S000000831 - symbol:SMB1 "Core Sm protein Sm B" speci... 198 7.7e-16 1
UNIPROTKB|J3KRY3 - symbol:SNRPN "Small nuclear ribonucleo... 193 2.6e-15 1
UNIPROTKB|Q9BRA0 - symbol:LSMD1 "LSM domain-containing pr... 112 1.0e-06 1
MGI|MGI:1925554 - symbol:Lsmd1 "LSM domain containing 1" ... 110 1.6e-06 1
DICTYBASE|DDB_G0285395 - symbol:snrpD2 "putative small nu... 109 2.1e-06 1
SGD|S000005091 - symbol:LSM7 "Lsm (Like Sm) protein" spec... 107 3.4e-06 1
WB|WBGene00004917 - symbol:snr-4 species:6239 "Caenorhabd... 107 3.4e-06 1
UNIPROTKB|Q18786 - symbol:snr-4 "Probable small nuclear r... 107 3.4e-06 1
DICTYBASE|DDB_G0277107 - symbol:lsm3 "putative U6 small n... 106 4.3e-06 1
TAIR|locus:2036257 - symbol:LSM3B "AT1G76860" species:370... 106 4.3e-06 1
WB|WBGene00003081 - symbol:lsm-7 species:6239 "Caenorhabd... 106 4.3e-06 1
UNIPROTKB|Q23543 - symbol:lsm-7 "Protein LSM-7" species:6... 106 4.3e-06 1
TAIR|locus:2014922 - symbol:LSM3A "AT1G21190" species:370... 105 5.5e-06 1
FB|FBgn0051950 - symbol:CG31950 species:7227 "Drosophila ... 104 7.0e-06 1
GENEDB_PFALCIPARUM|PFL0460w - symbol:PFL0460w "u6 snRNA-a... 103 9.0e-06 1
UNIPROTKB|Q8I5V6 - symbol:PFL0460w "Lsm7 homologue, putat... 103 9.0e-06 1
TAIR|locus:2043323 - symbol:AT2G47640 "AT2G47640" species... 101 1.5e-05 1
TAIR|locus:2081685 - symbol:AT3G62840 "AT3G62840" species... 101 1.5e-05 1
FB|FBgn0261789 - symbol:SmD2 "Small ribonucleoprotein par... 100 1.9e-05 1
UNIPROTKB|G3X6Z3 - symbol:SNRPD2 "Small nuclear ribonucle... 100 1.9e-05 1
UNIPROTKB|Q3SZF8 - symbol:SNRPD2 "Small nuclear ribonucle... 100 1.9e-05 1
UNIPROTKB|F1PSI7 - symbol:SNRPD2 "Uncharacterized protein... 100 1.9e-05 1
UNIPROTKB|P62316 - symbol:SNRPD2 "Small nuclear ribonucle... 100 1.9e-05 1
MGI|MGI:98345 - symbol:Snrpd2 "small nuclear ribonucleopr... 100 1.9e-05 1
RGD|1593018 - symbol:Snrpd2 "small nuclear ribonucleoprot... 100 1.9e-05 1
ZFIN|ZDB-GENE-040914-10 - symbol:snrpd2 "small nuclear ri... 100 1.9e-05 1
FB|FBgn0051184 - symbol:LSm3 species:7227 "Drosophila mel... 97 3.9e-05 1
WB|WBGene00003077 - symbol:lsm-3 species:6239 "Caenorhabd... 95 6.3e-05 1
ZFIN|ZDB-GENE-030131-8284 - symbol:lsm7 "LSM7 homolog, U6... 94 8.1e-05 1
GENEDB_PFALCIPARUM|PF08_0049 - symbol:PF08_0049 "ribonucl... 93 0.00010 1
GENEDB_PFALCIPARUM|PFB0865w - symbol:PFB0865w "small nucl... 93 0.00010 1
UNIPROTKB|O96265 - symbol:PFB0865w "Small nuclear ribonuc... 93 0.00010 1
POMBASE|SPCC285.12 - symbol:lsm7 "U6 snRNP-associated pro... 93 0.00010 1
UNIPROTKB|Q9UK45 - symbol:LSM7 "U6 snRNA-associated Sm-li... 92 0.00013 1
UNIPROTKB|G4MSI0 - symbol:MGG_01450 "Sm snRNP core protei... 92 0.00013 1
UNIPROTKB|G4N3U5 - symbol:MGG_16841 "Uncharacterized prot... 91 0.00017 1
UNIPROTKB|G4NGW0 - symbol:MGG_04013 "Small nuclear ribonu... 91 0.00017 1
UNIPROTKB|F1P280 - symbol:LSM3 "Uncharacterized protein" ... 90 0.00021 1
UNIPROTKB|Q32PE9 - symbol:LSM3 "U6 snRNA-associated Sm-li... 90 0.00021 1
UNIPROTKB|P62310 - symbol:LSM3 "U6 snRNA-associated Sm-li... 90 0.00021 1
UNIPROTKB|F2Z5S4 - symbol:LSM3 "Uncharacterized protein" ... 90 0.00021 1
MGI|MGI:1914928 - symbol:Lsm3 "LSM3 homolog, U6 small nuc... 90 0.00021 1
RGD|1305971 - symbol:Lsm3 "LSM3 homolog, U6 small nuclear... 90 0.00021 1
UNIPROTKB|G4MST0 - symbol:MGG_04539 "Uncharacterized prot... 88 0.00035 1
ASPGD|ASPL0000050456 - symbol:AN1802 species:162425 "Emer... 87 0.00045 1
ASPGD|ASPL0000060673 - symbol:AN10007 species:162425 "Eme... 86 0.00057 1
UNIPROTKB|Q3ZBL0 - symbol:SNRPG "Small nuclear ribonucleo... 86 0.00057 1
UNIPROTKB|P62308 - symbol:SNRPG "Small nuclear ribonucleo... 86 0.00057 1
UNIPROTKB|F2Z5V2 - symbol:LOC100525867 "Uncharacterized p... 86 0.00057 1
RGD|1584713 - symbol:Snrpg "small nuclear ribonucleoprote... 86 0.00057 1
SGD|S000003660 - symbol:LSM1 "Lsm (Like Sm) protein" spec... 93 0.00083 1
>TAIR|locus:2128610 [details] [associations]
symbol:smB "small nuclear ribonucleoprotein associated
protein B" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0015030 "Cajal body" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0001510 "RNA methylation" evidence=RCA]
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CP002687 GO:GO:0003723
GO:GO:0030529 GO:GO:0015030 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AL161553 EMBL:AL080253 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:P14678 KO:K11086
HOGENOM:HOG000188899 InterPro:IPR017131 PIRSF:PIRSF037187
OMA:PIIRPPG ProtClustDB:CLSN2916196 EMBL:BT004219 EMBL:BT005057
EMBL:AK317021 IPI:IPI00542207 PIR:T10586 RefSeq:NP_001031682.1
RefSeq:NP_001154258.1 RefSeq:NP_193777.1 RefSeq:NP_849414.1
UniGene:At.3551 ProteinModelPortal:Q9SUN5 SMR:Q9SUN5 IntAct:Q9SUN5
STRING:Q9SUN5 EnsemblPlants:AT4G20440.1 EnsemblPlants:AT4G20440.2
EnsemblPlants:AT4G20440.3 EnsemblPlants:AT4G20440.4 GeneID:827792
KEGG:ath:AT4G20440 TAIR:At4g20440 InParanoid:Q9SUN5
PhylomeDB:Q9SUN5 Genevestigator:Q9SUN5 Uniprot:Q9SUN5
Length = 257
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 117/172 (68%), Positives = 118/172 (68%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-- 58
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRXXXXXXXXXXXXXXXXXXXXXXXX 120
NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESR
Sbjct: 59 INEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPT 118
Query: 121 XXLVQAQXXXXXXXXXXXXXXXXMMQPQISRPPIPQLSAPPMTYPATSGGPP 172
LVQAQ MMQPQISRPP QLSAPP+ P PP
Sbjct: 119 GPLVQAQPGLSGPVRGVGGPAPGMMQPQISRPP--QLSAPPIIRPPGQMLPP 168
>TAIR|locus:2163416 [details] [associations]
symbol:AT5G44500 "AT5G44500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
INTERPRO:IPR001163 EMBL:CP002688 GO:GO:0005730 GO:GO:0003723
GO:GO:0030529 EMBL:AB017065 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P14678 KO:K11086
InterPro:IPR017131 PIRSF:PIRSF037187 OMA:KNNKMIQ EMBL:AY042856
EMBL:AY072470 EMBL:AK176849 EMBL:AK221574 IPI:IPI00525357
RefSeq:NP_001032011.1 RefSeq:NP_199263.1 UniGene:At.7776
ProteinModelPortal:Q9FI15 SMR:Q9FI15 IntAct:Q9FI15 STRING:Q9FI15
EnsemblPlants:AT5G44500.1 EnsemblPlants:AT5G44500.2 GeneID:834477
KEGG:ath:AT5G44500 TAIR:At5g44500 InParanoid:Q9FI15
PhylomeDB:Q9FI15 ProtClustDB:CLSN2916196 Genevestigator:Q9FI15
Uniprot:Q9FI15
Length = 254
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 115/177 (64%), Positives = 118/177 (66%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQFINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKK- 59
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRXXXXXXXXXXXXXXXXXXXXXXXX 120
TNEERE+RRTLGLVLLRGEEVISMTVEGPPPPEESR
Sbjct: 60 TNEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPT 119
Query: 121 XXLVQAQXXXXXXXXXXXXXXXXMMQPQISRPPIPQLSAPPMTYP-----ATSGGPP 172
LVQAQ MMQPQISRPP Q+ PP P A GGPP
Sbjct: 120 GPLVQAQPGLSGPVRGIGGPAPGMMQPQISRPP--QIIRPPGQMPPQPPFAGQGGPP 174
>UNIPROTKB|Q9PV94 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein B'" species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11086 CTD:6628 HOGENOM:HOG000188899 HOVERGEN:HBG001019
OrthoDB:EOG44MXTD InterPro:IPR017131 PIRSF:PIRSF037187
GeneTree:ENSGT00670000098029 EMBL:AF134830 IPI:IPI00603436
RefSeq:NP_989930.1 UniGene:Gga.3086 ProteinModelPortal:Q9PV94
SMR:Q9PV94 STRING:Q9PV94 PRIDE:Q9PV94 Ensembl:ENSGALT00000011732
GeneID:395298 KEGG:gga:395298 InParanoid:Q9PV94 OMA:KNNKMIQ
NextBio:20815383 ArrayExpress:Q9PV94 Uniprot:Q9PV94
Length = 240
Score = 305 (112.4 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 58/93 (62%), Positives = 73/93 (78%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 41 (19.5 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 145 MQPQISRPPIPQLSAPP 161
M P RPP P + PP
Sbjct: 215 MPPPGMRPPPPGMRGPP 231
Score = 39 (18.8 bits), Expect = 3.2e-32, Sum P(3) = 3.2e-32
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 144 MMQPQISRPPIPQLSAPPMTYPATSGGP 171
M P RPP+ PPM P G P
Sbjct: 189 MGPPPGMRPPM----GPPMGMPPGRGAP 212
Score = 35 (17.4 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 86 VEGPPPP 92
+ GPPPP
Sbjct: 227 MRGPPPP 233
Score = 35 (17.4 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P Y GGPP
Sbjct: 161 IAGAPTQYTPGRGGPP 176
Score = 34 (17.0 bits), Expect = 2.0e-32, Sum P(3) = 2.0e-32
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 88 GPPPP 92
GPPPP
Sbjct: 174 GPPPP 178
>ZFIN|ZDB-GENE-040426-1819 [details] [associations]
symbol:snrpb "small nuclear ribonucleoprotein
polypeptides B and B1" species:7955 "Danio rerio" [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040426-1819 GO:GO:0005634 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HSSP:P14678 KO:K11086 CTD:6628
HOGENOM:HOG000188899 HOVERGEN:HBG001019 OrthoDB:EOG44MXTD
InterPro:IPR017131 PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029
EMBL:CU929339 EMBL:AF259079 EMBL:BC065601 IPI:IPI00498167
RefSeq:NP_991230.1 UniGene:Dr.30320 SMR:Q9I9E5 STRING:Q9I9E5
Ensembl:ENSDART00000011663 GeneID:402966 KEGG:dre:402966
InParanoid:Q9I9E5 NextBio:20816775 Uniprot:Q9I9E5
Length = 239
Score = 304 (112.1 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 58/93 (62%), Positives = 73/93 (78%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 43 (20.2 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP GGPP
Sbjct: 159 IAGAPTQYPPGRGGPP 174
Score = 41 (19.5 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 145 MQPQISRPPIPQLSAPP 161
M P RPP P + PP
Sbjct: 213 MPPPGMRPPPPGMRGPP 229
Score = 39 (18.8 bits), Expect = 4.0e-32, Sum P(3) = 4.0e-32
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 144 MMQPQISRPPIPQLSAPPMTYPATSGGP 171
M P RPP+ PPM P G P
Sbjct: 187 MGPPPGMRPPM----GPPMGMPPGRGAP 210
Score = 35 (17.4 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 147 PQISRPPIPQLSAPP 161
P + PP P L PP
Sbjct: 223 PGMRGPPPPGLRPPP 237
Score = 35 (17.4 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 86 VEGPPPP 92
+ GPPPP
Sbjct: 225 MRGPPPP 231
Score = 34 (17.0 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 88 GPPPP 92
GPPPP
Sbjct: 172 GPPPP 176
>UNIPROTKB|P14678 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
proteins B and B'" species:9606 "Homo sapiens" [GO:0071204 "histone
pre-mRNA 3'end processing complex" evidence=IEA] [GO:0071208
"histone pre-mRNA DCP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005683 "U7 snRNP" evidence=IDA] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=TAS] [GO:0005681
"spliceosomal complex" evidence=TAS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;TAS] [GO:0000387 "spliceosomal snRNP
assembly" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=TAS] [GO:0006369 "termination
of RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0034660 "ncRNA metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
EMBL:CH471133 GO:GO:0000387 GO:GO:0034660 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 Reactome:REACT_1788
GO:GO:0006369 Reactome:REACT_78 GO:GO:0005689 GO:GO:0071204
Pfam:PF01423 GO:GO:0008334 GO:GO:0005683 GO:GO:0071208
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K11086 CTD:6628
HOGENOM:HOG000188899 HOVERGEN:HBG001019 OrthoDB:EOG44MXTD
InterPro:IPR017131 PIRSF:PIRSF037187 EMBL:X17567 EMBL:X17568
EMBL:X15893 EMBL:AF134825 EMBL:AF134822 EMBL:AF134823 EMBL:AF134824
EMBL:AL049650 EMBL:CR456969 EMBL:M34081 EMBL:M34082 EMBL:X52979
IPI:IPI00027285 IPI:IPI00329512 IPI:IPI00395674 PIR:S09377
RefSeq:NP_003082.1 RefSeq:NP_937859.1 UniGene:Hs.83753 PDB:1D3B
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:1D3B
PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1
PDBsum:3PGW ProteinModelPortal:P14678 SMR:P14678 DIP:DIP-31239N
IntAct:P14678 MINT:MINT-124876 STRING:P14678 PhosphoSite:P14678
DMDM:134037 PaxDb:P14678 PRIDE:P14678 DNASU:6628
Ensembl:ENST00000381342 Ensembl:ENST00000438552 GeneID:6628
KEGG:hsa:6628 UCSC:uc002wfz.1 GeneCards:GC20M002442 HGNC:HGNC:11153
HPA:CAB009610 HPA:HPA003482 MIM:182282 neXtProt:NX_P14678
PharmGKB:PA35995 ChiTaRS:SNRPB EvolutionaryTrace:P14678
GenomeRNAi:6628 NextBio:25817 ArrayExpress:P14678 Bgee:P14678
CleanEx:HS_SNRPB Genevestigator:P14678 GermOnline:ENSG00000125835
Uniprot:P14678
Length = 240
Score = 304 (112.1 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 58/93 (62%), Positives = 73/93 (78%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 43 (20.2 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP GGPP
Sbjct: 161 IAGAPTQYPPGRGGPP 176
Score = 41 (19.5 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 145 MQPQISRPPIPQLSAPP 161
M P RPP P + PP
Sbjct: 215 MPPPGMRPPPPGMRGPP 231
Score = 35 (17.4 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 86 VEGPPPP 92
+ GPPPP
Sbjct: 227 MRGPPPP 233
Score = 34 (17.0 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 88 GPPPP 92
GPPPP
Sbjct: 174 GPPPP 178
>UNIPROTKB|Q9TU67 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein B'" species:9365 "Erinaceus europaeus" [GO:0005683 "U7
snRNP" evidence=ISS] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000188899 HOVERGEN:HBG001019 OrthoDB:EOG44MXTD
InterPro:IPR017131 PIRSF:PIRSF037187 EMBL:AF134826 EMBL:AF134829
ProteinModelPortal:Q9TU67 SMR:Q9TU67 PRIDE:Q9TU67 Uniprot:Q9TU67
Length = 240
Score = 304 (112.1 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 58/93 (62%), Positives = 73/93 (78%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 43 (20.2 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP GGPP
Sbjct: 161 IAGAPTQYPPGRGGPP 176
Score = 41 (19.5 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 145 MQPQISRPPIPQLSAPP 161
M P RPP P + PP
Sbjct: 215 MPPPGMRPPPPGMRGPP 231
Score = 35 (17.4 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 86 VEGPPPP 92
+ GPPPP
Sbjct: 227 MRGPPPP 233
Score = 34 (17.0 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 88 GPPPP 92
GPPPP
Sbjct: 174 GPPPP 178
>UNIPROTKB|Q58DW4 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein B'" species:9913 "Bos taurus" [GO:0042802 "identical
protein binding" evidence=ISS] [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0042802 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HSSP:P14678 KO:K11086 EMBL:BT021483 IPI:IPI00702381
RefSeq:NP_001029903.1 UniGene:Bt.57435 ProteinModelPortal:Q58DW4
SMR:Q58DW4 STRING:Q58DW4 PRIDE:Q58DW4 GeneID:613304 KEGG:bta:613304
CTD:6628 HOGENOM:HOG000188899 HOVERGEN:HBG001019 InParanoid:Q58DW4
OrthoDB:EOG44MXTD NextBio:20898510 InterPro:IPR017131
PIRSF:PIRSF037187 Uniprot:Q58DW4
Length = 240
Score = 304 (112.1 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 58/93 (62%), Positives = 73/93 (78%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 41 (19.5 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 145 MQPQISRPPIPQLSAPP 161
M P RPP P + PP
Sbjct: 215 MPPPGMRPPPPGMRGPP 231
Score = 37 (18.1 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP GPP
Sbjct: 161 IAGAPTQYPPGRAGPP 176
Score = 35 (17.4 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 86 VEGPPPP 92
+ GPPPP
Sbjct: 227 MRGPPPP 233
Score = 34 (17.0 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 88 GPPPP 92
GPPPP
Sbjct: 174 GPPPP 178
>UNIPROTKB|Q9N1Q0 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein B'" species:9315 "Macropus eugenii" [GO:0005683 "U7 snRNP"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
HSSP:P14678 HOGENOM:HOG000188899 HOVERGEN:HBG001019
OrthoDB:EOG44MXTD InterPro:IPR017131 PIRSF:PIRSF037187
GeneTree:ENSGT00670000098029 EMBL:AF176323
ProteinModelPortal:Q9N1Q0 SMR:Q9N1Q0 PRIDE:Q9N1Q0
Ensembl:ENSMEUT00000015669 Uniprot:Q9N1Q0
Length = 240
Score = 304 (112.1 bits), Expect = 5.1e-32, Sum P(3) = 5.1e-32
Identities = 58/93 (62%), Positives = 73/93 (78%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 38 (18.4 bits), Expect = 5.1e-32, Sum P(3) = 5.1e-32
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 151 RPPIPQLSAPPMTYPATSGGPP 172
RPP ++ PP P GPP
Sbjct: 183 RPPPGMMAPPPGMRPPM--GPP 202
Score = 38 (18.4 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P +P GGPP
Sbjct: 161 IAGAPTQHPPGRGGPP 176
Score = 37 (18.1 bits), Expect = 6.5e-32, Sum P(3) = 6.5e-32
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 147 PQISRPPIPQLSAPP 161
P RPP P + PP
Sbjct: 217 PPGMRPPPPGMRGPP 231
Score = 36 (17.7 bits), Expect = 8.3e-32, Sum P(3) = 8.3e-32
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 144 MMQPQISRPPI-PQLSAPPMTYPATSGGPP 172
M P RPP+ P PP A G PP
Sbjct: 189 MAPPPGMRPPMGPPTGMPPGR-GAPMGIPP 217
Score = 35 (17.4 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 86 VEGPPPP 92
+ GPPPP
Sbjct: 227 MRGPPPP 233
Score = 34 (17.0 bits), Expect = 5.1e-32, Sum P(3) = 5.1e-32
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 88 GPPPP 92
GPPPP
Sbjct: 174 GPPPP 178
>UNIPROTKB|Q9TU66 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein B'" species:13616 "Monodelphis domestica" [GO:0005683 "U7
snRNP" evidence=ISS] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 CTD:6628 HOGENOM:HOG000188899 HOVERGEN:HBG001019
OrthoDB:EOG44MXTD InterPro:IPR017131 PIRSF:PIRSF037187
EMBL:AF134827 RefSeq:NP_001029144.1 UniGene:Mdm.222
ProteinModelPortal:Q9TU66 SMR:Q9TU66 STRING:Q9TU66 PRIDE:Q9TU66
GeneID:554245 KEGG:mdo:554245 InParanoid:Q9TU66 Uniprot:Q9TU66
Length = 240
Score = 295 (108.9 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 57/93 (61%), Positives = 72/93 (77%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+ RMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 45 (20.9 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP+ GGPP
Sbjct: 161 IAGAPTQYPSGRGGPP 176
Score = 41 (19.5 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 145 MQPQISRPPIPQLSAPP 161
M P RPP P + PP
Sbjct: 215 MPPPGMRPPPPGMRGPP 231
Score = 41 (19.5 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 144 MMQPQISRPPIPQLSAPPMTYPATSGGP 171
M P RPP+ PPM P G P
Sbjct: 189 MAPPPGMRPPM----GPPMGMPPGRGAP 212
Score = 35 (17.4 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 86 VEGPPPP 92
+ GPPPP
Sbjct: 227 MRGPPPP 233
Score = 34 (17.0 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 88 GPPPP 92
GPPPP
Sbjct: 174 GPPPP 178
>FB|FBgn0262601 [details] [associations]
symbol:SmB "Small ribonucleoprotein particle protein SmB"
species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0016070 "RNA metabolic process" evidence=NAS]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0045495
"pole plasm" evidence=IDA] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0015030 "Cajal body" evidence=IDA] INTERPRO:IPR001163
GO:GO:0008406 GO:GO:0007052 EMBL:AE014134 GO:GO:0003723
GO:GO:0007281 GO:GO:0015030 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532
GO:GO:0045495 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11086 InterPro:IPR017131 PIRSF:PIRSF037187
GeneTree:ENSGT00670000098029 OMA:KNNKMIQ EMBL:L02919 EMBL:AY061171
PIR:JN0574 RefSeq:NP_001188780.1 RefSeq:NP_476921.1 UniGene:Dm.3699
ProteinModelPortal:Q05856 SMR:Q05856 DIP:DIP-18712N IntAct:Q05856
MINT:MINT-283074 STRING:Q05856 PaxDb:Q05856 PRIDE:Q05856
EnsemblMetazoa:FBtr0304118 GeneID:34426 KEGG:dme:Dmel_CG5352
CTD:34426 FlyBase:FBgn0262601 InParanoid:Q05856 OrthoDB:EOG4F7M2H
PhylomeDB:Q05856 GenomeRNAi:34426 NextBio:788434 Bgee:Q05856
GermOnline:CG5352 Uniprot:Q05856
Length = 199
Score = 308 (113.5 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 55/94 (58%), Positives = 74/94 (78%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KM+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ KN+
Sbjct: 1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIR----SKNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEE 94
ERE++R LG VLLRGE ++S+TVEGPPPPEE
Sbjct: 57 KVPEREEKRVLGFVLLRGENIVSLTVEGPPPPEE 90
Score = 42 (19.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 149 ISRPPIPQLSAPPMTYPATSGGPPVIR 175
+ PP P+ P + P + GP + R
Sbjct: 82 VEGPPPPEEGLPRVPIPGAAPGPGIGR 108
>UNIPROTKB|E2R1C4 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein" species:9615 "Canis lupus familiaris" [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11086 CTD:6628 InterPro:IPR017131
PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029 OMA:KNNKMIQ
EMBL:AAEX03013840 RefSeq:XP_542930.2 ProteinModelPortal:E2R1C4
Ensembl:ENSCAFT00000030343 GeneID:485806 KEGG:cfa:485806
Uniprot:E2R1C4
Length = 231
Score = 304 (112.1 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 58/93 (62%), Positives = 73/93 (78%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 43 (20.2 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP GGPP
Sbjct: 161 IAGAPTQYPPGRGGPP 176
Score = 34 (17.0 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 88 GPPPP 92
GPPPP
Sbjct: 174 GPPPP 178
>MGI|MGI:98342 [details] [associations]
symbol:Snrpb "small nuclear ribonucleoprotein B" species:10090
"Mus musculus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005683 "U7
snRNP" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0071204 "histone pre-mRNA 3'end processing complex"
evidence=IDA] [GO:0071208 "histone pre-mRNA DCP binding"
evidence=IDA] MGI:MGI:98342 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 GO:GO:0071204 Pfam:PF01423
GO:GO:0005683 GO:GO:0071208 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11086 CTD:6628 HOGENOM:HOG000188899
HOVERGEN:HBG001019 OrthoDB:EOG44MXTD InterPro:IPR017131
PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029 OMA:KNNKMIQ
ChiTaRS:SNRPB EMBL:M58761 EMBL:AK146319 IPI:IPI00114052 PIR:I53659
RefSeq:NP_033251.1 UniGene:Mm.88216 ProteinModelPortal:P27048
SMR:P27048 IntAct:P27048 STRING:P27048 PhosphoSite:P27048
PaxDb:P27048 PRIDE:P27048 DNASU:20638 Ensembl:ENSMUST00000103199
GeneID:20638 KEGG:mmu:20638 InParanoid:P27048 NextBio:299039
PMAP-CutDB:P27048 Bgee:P27048 CleanEx:MM_SNRPB
Genevestigator:P27048 GermOnline:ENSMUSG00000027404 Uniprot:P27048
Length = 231
Score = 304 (112.1 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 58/93 (62%), Positives = 73/93 (78%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 43 (20.2 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP GGPP
Sbjct: 161 IAGAPTQYPPGRGGPP 176
Score = 34 (17.0 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 88 GPPPP 92
GPPPP
Sbjct: 174 GPPPP 178
>UNIPROTKB|Q17QN3 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein N" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG001019 InterPro:IPR017131
PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029 EMBL:BC118260
EMBL:BC147854 IPI:IPI00703939 RefSeq:NP_001073265.1 UniGene:Bt.4887
ProteinModelPortal:Q17QN3 SMR:Q17QN3 STRING:Q17QN3 PRIDE:Q17QN3
Ensembl:ENSBTAT00000010856 GeneID:780877 KEGG:bta:780877 CTD:6638
InParanoid:Q17QN3 KO:K11100 OMA:PIIRPPG NextBio:20924520
Uniprot:Q17QN3
Length = 240
Score = 301 (111.0 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 58/93 (62%), Positives = 72/93 (77%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNA 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 42 (19.8 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 144 MMQPQISRPPIPQLSAPPMTYPATSGGP 171
M P RPP+ PP+ P T G P
Sbjct: 189 MAPPPGMRPPM----GPPIGLPPTRGTP 212
Score = 41 (19.5 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 145 MQPQISRPPIPQLSAPP 161
M P RPP P + PP
Sbjct: 215 MPPPGMRPPPPGIRGPP 231
Score = 37 (18.1 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 86 VEGPPPP 92
+ GPPPP
Sbjct: 227 IRGPPPP 233
>UNIPROTKB|I3LBT8 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR017131 PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029
OMA:HHTFICS Ensembl:ENSSSCT00000029603 Uniprot:I3LBT8
Length = 240
Score = 301 (111.0 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 58/93 (62%), Positives = 72/93 (77%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNA 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 41 (19.5 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 145 MQPQISRPPIPQLSAPP 161
M P RPP P + PP
Sbjct: 215 MPPPGMRPPPPGIRGPP 231
Score = 37 (18.1 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 86 VEGPPPP 92
+ GPPPP
Sbjct: 227 IRGPPPP 233
Score = 36 (17.7 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 147 PQISRPPIPQLSAPPMTYPATSGGPP 172
P +S P P + PP T G PP
Sbjct: 193 PGMSPPMGPPIGLPP-TRGTPIGMPP 217
Score = 35 (17.4 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP G PP
Sbjct: 161 IAGAPTQYPPGRGTPP 176
>UNIPROTKB|E2RPQ0 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein" species:9615 "Canis lupus familiaris" [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 InterPro:IPR017131 PIRSF:PIRSF037187
GeneTree:ENSGT00670000098029 CTD:6638 KO:K11100 OMA:HHTFICS
EMBL:AAEX03002194 RefSeq:XP_536165.1 Ensembl:ENSCAFT00000016088
GeneID:479012 KEGG:cfa:479012 NextBio:20854263 Uniprot:E2RPQ0
Length = 240
Score = 301 (111.0 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 58/93 (62%), Positives = 72/93 (77%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNA 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 41 (19.5 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 145 MQPQISRPPIPQLSAPP 161
M P RPP P + PP
Sbjct: 215 MPPPGMRPPPPGIRGPP 231
Score = 37 (18.1 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 86 VEGPPPP 92
+ GPPPP
Sbjct: 227 IRGPPPP 233
Score = 35 (17.4 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP G PP
Sbjct: 161 IAGAPTQYPPGRGTPP 176
>UNIPROTKB|P63162 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein N" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IEA] [GO:0005686 "U2
snRNP" evidence=IEA] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 Orphanet:739 HOGENOM:HOG000188899 HOVERGEN:HBG001019
OrthoDB:EOG44MXTD InterPro:IPR017131 PIRSF:PIRSF037187
HPA:HPA003482 CTD:6638 KO:K11100 EMBL:X15892 EMBL:J04615
EMBL:U41303 EMBL:AF400432 EMBL:CR450350 EMBL:BC000611 EMBL:BC003180
EMBL:BC024777 EMBL:BC025178 IPI:IPI00220360 PIR:A33270
RefSeq:NP_003088.1 RefSeq:NP_073716.1 RefSeq:NP_073717.1
RefSeq:NP_073718.1 RefSeq:NP_073719.1 UniGene:Hs.555970
UniGene:Hs.564847 UniGene:Hs.578619 UniGene:Hs.585703
UniGene:Hs.592473 UniGene:Hs.621316 UniGene:Hs.632166
UniGene:Hs.728856 UniGene:Hs.731866 UniGene:Hs.733072
UniGene:Hs.737651 ProteinModelPortal:P63162 SMR:P63162
IntAct:P63162 MINT:MINT-1365854 STRING:P63162 PhosphoSite:P63162
DMDM:52783794 PaxDb:P63162 PRIDE:P63162 DNASU:6638
Ensembl:ENST00000346403 Ensembl:ENST00000390687
Ensembl:ENST00000400097 Ensembl:ENST00000400098
Ensembl:ENST00000400100 Ensembl:ENST00000577565 GeneID:6638
KEGG:hsa:6638 UCSC:uc001ywp.1 GeneCards:GC15P025068 HGNC:HGNC:11164
MIM:182279 neXtProt:NX_P63162 PharmGKB:PA36005 InParanoid:P63162
PhylomeDB:P63162 ChiTaRS:SNRPN GenomeRNAi:6638 NextBio:25861
ArrayExpress:P63162 Bgee:P63162 CleanEx:HS_SNRPN
Genevestigator:P63162 GermOnline:ENSG00000128739 Uniprot:P63162
Length = 240
Score = 301 (111.0 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 58/93 (62%), Positives = 72/93 (77%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNA 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 41 (19.5 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 145 MQPQISRPPIPQLSAPP 161
M P RPP P + PP
Sbjct: 215 MPPPGMRPPPPGIRGPP 231
Score = 37 (18.1 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 86 VEGPPPP 92
+ GPPPP
Sbjct: 227 IRGPPPP 233
Score = 35 (17.4 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP G PP
Sbjct: 161 IAGAPTQYPPGRGTPP 176
>MGI|MGI:98347 [details] [associations]
symbol:Snrpn "small nuclear ribonucleoprotein N" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=TAS] [GO:0005685 "U1 snRNP" evidence=ISO]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] MGI:MGI:98347 INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOGENOM:HOG000188899 HOVERGEN:HBG001019
OrthoDB:EOG44MXTD InterPro:IPR017131 PIRSF:PIRSF037187 CTD:6638
KO:K11100 ChiTaRS:SNRPN EMBL:X62648 EMBL:X63730 EMBL:S62288
EMBL:AK013607 EMBL:BC019589 EMBL:BC024880 IPI:IPI00128699
PIR:S20068 RefSeq:NP_001076430.1 RefSeq:NP_001076431.1
RefSeq:NP_038698.1 UniGene:Mm.274995 ProteinModelPortal:P63163
SMR:P63163 STRING:P63163 PhosphoSite:P63163 PaxDb:P63163
PRIDE:P63163 Ensembl:ENSMUST00000059305 Ensembl:ENSMUST00000098402
GeneID:20646 KEGG:mmu:20646 InParanoid:P63163 OMA:HHTFICS
NextBio:299055 Bgee:P63163 CleanEx:MM_SNRPN Genevestigator:P63163
GermOnline:ENSMUSG00000000948 Uniprot:P63163
Length = 240
Score = 301 (111.0 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 58/93 (62%), Positives = 72/93 (77%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNA 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 41 (19.5 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 145 MQPQISRPPIPQLSAPP 161
M P RPP P + PP
Sbjct: 215 MPPPGMRPPPPGIRGPP 231
Score = 37 (18.1 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 86 VEGPPPP 92
+ GPPPP
Sbjct: 227 IRGPPPP 233
Score = 35 (17.4 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP G PP
Sbjct: 161 IAGAPTQYPPGRGTPP 176
>RGD|621306 [details] [associations]
symbol:Snrpn "small nuclear ribonucleoprotein polypeptide N"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005685
"U1 snRNP" evidence=IDA] [GO:0005686 "U2 snRNP" evidence=IDA]
[GO:0009725 "response to hormone stimulus" evidence=IEP] RGD:621306
INTERPRO:IPR001163 GO:GO:0003723 GO:GO:0009725 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005686 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GO:GO:0005685 HOGENOM:HOG000188899
HOVERGEN:HBG001019 OrthoDB:EOG44MXTD InterPro:IPR017131
PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029 CTD:6638 KO:K11100
EMBL:M29293 EMBL:M29294 EMBL:BC087671 IPI:IPI00327582 PIR:A34503
RefSeq:NP_112379.1 UniGene:Rn.11169 ProteinModelPortal:P63164
SMR:P63164 STRING:P63164 PhosphoSite:P63164 PRIDE:P63164
Ensembl:ENSRNOT00000014641 Ensembl:ENSRNOT00000021763 GeneID:81781
KEGG:rno:81781 UCSC:RGD:621306 InParanoid:P63164 NextBio:615627
Genevestigator:P63164 GermOnline:ENSRNOG00000015976 Uniprot:P63164
Length = 240
Score = 301 (111.0 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 58/93 (62%), Positives = 72/93 (77%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNA 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 41 (19.5 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 145 MQPQISRPPIPQLSAPP 161
M P RPP P + PP
Sbjct: 215 MPPPGMRPPPPGIRGPP 231
Score = 37 (18.1 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 86 VEGPPPP 92
+ GPPPP
Sbjct: 227 IRGPPPP 233
Score = 35 (17.4 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP G PP
Sbjct: 161 IAGAPTQYPPGRGTPP 176
>UNIPROTKB|G1K134 [details] [associations]
symbol:Bt.57435 "Small nuclear ribonucleoprotein-associated
protein" species:9913 "Bos taurus" [GO:0071208 "histone pre-mRNA
DCP binding" evidence=IEA] [GO:0071204 "histone pre-mRNA 3'end
processing complex" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0005683 "U7 snRNP" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005737 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005689 GO:GO:0071204 Pfam:PF01423 GO:GO:0005683
GO:GO:0071208 InterPro:IPR006649 SMART:SM00651 InterPro:IPR017131
PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029 EMBL:DAAA02036194
Ensembl:ENSBTAT00000001379 OMA:PGIAFFD Uniprot:G1K134
Length = 239
Score = 304 (112.1 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 58/93 (62%), Positives = 73/93 (78%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 37 (18.1 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP GPP
Sbjct: 161 IAGAPTQYPPGRAGPP 176
Score = 34 (17.0 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 88 GPPPP 92
GPPPP
Sbjct: 174 GPPPP 178
>UNIPROTKB|F1S891 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein" species:9823 "Sus scrofa" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
InterPro:IPR017131 PIRSF:PIRSF037187 GeneTree:ENSGT00670000098029
EMBL:CU633588 Ensembl:ENSSSCT00000007852 OMA:PGHAPPR Uniprot:F1S891
Length = 238
Score = 304 (112.1 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 58/93 (62%), Positives = 73/93 (78%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
Score = 37 (18.1 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 152 PPIPQLSAPPMTYPATSGGPP 172
PP P A P A G PP
Sbjct: 201 PPRPPPPAAPRGLAAGPGHPP 221
>DICTYBASE|DDB_G0272320 [details] [associations]
symbol:snrpb "putative small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] dictyBase:DDB_G0272320 INTERPRO:IPR001163
GO:GO:0005634 GenomeReviews:CM000151_GR GO:GO:0003723
EMBL:AAFI02000008 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HSSP:P14678 KO:K11086 InterPro:IPR017131 PIRSF:PIRSF037187
RefSeq:XP_645139.1 ProteinModelPortal:Q55A45 SMR:Q55A45
STRING:Q55A45 EnsemblProtists:DDB0233178 GeneID:8618309
KEGG:ddi:DDB_G0272320 OMA:NMPPQGF Uniprot:Q55A45
Length = 274
Score = 303 (111.7 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 59/91 (64%), Positives = 76/91 (83%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
M KSSKMLQ+INYRMRVTIQDGR +VG+F+AFD+HMN+V+ D EEFR++ KGK
Sbjct: 4 MPKSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQ-KGK----- 57
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
E+RE++RTLG++L+RGE V+SM+VE PPP E
Sbjct: 58 EDREEKRTLGMILIRGETVVSMSVEAPPPEE 88
Score = 37 (18.1 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 152 PPIPQLSAPPMTYPATSGGP 171
PP+ + PP +P GGP
Sbjct: 154 PPMGRGGFPPQGFPP--GGP 171
>UNIPROTKB|B3KVR1 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000188899 HOVERGEN:HBG001019 InterPro:IPR017131
PIRSF:PIRSF037187 UniGene:Hs.555970 UniGene:Hs.564847
UniGene:Hs.578619 UniGene:Hs.585703 UniGene:Hs.592473
UniGene:Hs.621316 UniGene:Hs.632166 UniGene:Hs.728856
UniGene:Hs.731866 UniGene:Hs.733072 UniGene:Hs.737651
HGNC:HGNC:11164 ChiTaRS:SNRPN OMA:HHTFICS EMBL:AC124312
EMBL:AC090602 EMBL:AC090983 EMBL:AK123119 IPI:IPI00785142
SMR:B3KVR1 STRING:B3KVR1 Ensembl:ENST00000444203
Ensembl:ENST00000554227 UCSC:uc021sgb.1 Uniprot:B3KVR1
Length = 244
Score = 296 (109.3 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 57/92 (61%), Positives = 71/92 (77%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 6 TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNAK 61
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 62 QPEREEKRVLGLVLLRGENLVSMTVEGPPPKD 93
Score = 41 (19.5 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 145 MQPQISRPPIPQLSAPP 161
M P RPP P + PP
Sbjct: 219 MPPPGMRPPPPGIRGPP 235
Score = 37 (18.1 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 5/7 (71%), Positives = 6/7 (85%)
Query: 86 VEGPPPP 92
+ GPPPP
Sbjct: 231 IRGPPPP 237
Score = 35 (17.4 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP G PP
Sbjct: 165 IAGAPTQYPPGRGTPP 180
>UNIPROTKB|J3QLE5 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein N" species:9606 "Homo sapiens" [GO:0005685 "U1 snRNP"
evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HGNC:HGNC:11164 ChiTaRS:SNRPN EMBL:AC124312
EMBL:AC090602 EMBL:AC090983 Ensembl:ENST00000579070 Uniprot:J3QLE5
Length = 169
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 58/93 (62%), Positives = 72/93 (77%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNA 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
>UNIPROTKB|G4N0M9 [details] [associations]
symbol:MGG_16920 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
INTERPRO:IPR001163 EMBL:CM001233 GO:GO:0043581 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
RefSeq:XP_003712967.1 ProteinModelPortal:G4N0M9 SMR:G4N0M9
EnsemblFungi:MGG_16920T0 GeneID:12985877 KEGG:mgr:MGG_16920
Uniprot:G4N0M9
Length = 205
Score = 265 (98.3 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 52/100 (52%), Positives = 72/100 (72%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL------PPAKGK 57
+K KM +INYRMRVT+ DGRQ+VG+ MAFD+HMNLVL D EEFRK+ P A G
Sbjct: 5 NKQGKMAGYINYRMRVTLNDGRQMVGQMMAFDKHMNLVLADTEEFRKIKRKQAKPAAPGA 64
Query: 58 K--NNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEES 95
+++ E E++RTLGL ++RG +++S++VE PPP + S
Sbjct: 65 SGASSSTVESEEKRTLGLTIVRGAQIVSLSVESPPPADPS 104
Score = 37 (18.1 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 8/21 (38%), Positives = 8/21 (38%)
Query: 152 PPIPQLSAPPMTYPATSGGPP 172
P P AP P G PP
Sbjct: 155 PGFPGAGAPGFPPPGAPGFPP 175
>WB|WBGene00004915 [details] [associations]
symbol:snr-2 species:6239 "Caenorhabditis elegans"
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0002119 GO:GO:0000003 GO:GO:0003723 GO:GO:0030529
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K11086
HOGENOM:HOG000188899 EMBL:Z92773 PIR:T26289 RefSeq:NP_493348.1
ProteinModelPortal:P91918 SMR:P91918 IntAct:P91918 STRING:P91918
PaxDb:P91918 EnsemblMetazoa:W08E3.1.1 EnsemblMetazoa:W08E3.1.2
GeneID:173204 KEGG:cel:CELE_W08E3.1 UCSC:W08E3.1 CTD:173204
WormBase:W08E3.1 GeneTree:ENSGT00670000098029 InParanoid:P91918
OMA:AECEEHR NextBio:878703 Uniprot:P91918
Length = 160
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 48/94 (51%), Positives = 73/94 (77%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++SK++KM+ +NYRM++ +QDGR +G F AFD+HMN++L +CEE R++ P GKK
Sbjct: 1 MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKT- 59
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEE 94
+ E++R LGLVL+RGE ++SMTV+GPPP ++
Sbjct: 60 ---DGEEKRILGLVLVRGEHIVSMTVDGPPPRDD 90
>UNIPROTKB|J9NT78 [details] [associations]
symbol:SNRPB "Small nuclear ribonucleoprotein-associated
protein" species:9615 "Canis lupus familiaris" [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 InterPro:IPR017131 PIRSF:PIRSF037187
GeneTree:ENSGT00670000098029 OMA:PGHAPPR EMBL:AAEX03012558
Ensembl:ENSCAFT00000043350 Uniprot:J9NT78
Length = 238
Score = 239 (89.2 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 51/92 (55%), Positives = 67/92 (72%)
Query: 2 SMSKSSKML--QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKN 59
++ KSSKML Q I+YRMR + + + +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 6 TVGKSSKMLMLQHIDYRMRSSYKT-QIFIGTFKAFDKHMNLILCDCDEFRKMKP----KN 60
Query: 60 NTNEEREDRRTLGLVLLRGEEVISMTVEGPPP 91
+ ERE++R LGLVLL GE ++SMTVE PPP
Sbjct: 61 SKQAEREEKRVLGLVLLWGENLVSMTVEEPPP 92
Score = 44 (20.5 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP GGPP
Sbjct: 165 IAGAPTQYPPRRGGPP 180
Score = 34 (17.0 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 88 GPPPP 92
GPPPP
Sbjct: 227 GPPPP 231
>RGD|621301 [details] [associations]
symbol:Snrpb "small nuclear ribonucleoprotein polypeptides B and
B1" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;TAS] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005683 "U7 snRNP"
evidence=ISO;ISS] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0071204 "histone pre-mRNA 3'end processing
complex" evidence=ISO] [GO:0071208 "histone pre-mRNA DCP binding"
evidence=ISO] RGD:621301 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0008380 GO:GO:0006397 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0005689 GO:GO:0071204 Pfam:PF01423
GO:GO:0005683 GO:GO:0071208 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG001019 InterPro:IPR017131
PIRSF:PIRSF037187 EMBL:M29295 IPI:IPI00565726 PIR:B34503
UniGene:Rn.3437 ProteinModelPortal:P17136 SMR:P17136 STRING:P17136
PhosphoSite:P17136 PRIDE:P17136 UCSC:RGD:621301 InParanoid:P17136
ArrayExpress:P17136 Genevestigator:P17136
GermOnline:ENSRNOG00000006961 Uniprot:P17136
Length = 214
Score = 237 (88.5 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 44/74 (59%), Positives = 58/74 (78%)
Query: 20 TIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGE 79
++Q+GR +G F AFD+HMNL+L DC+EFRK+ P KN+ ERE++R LGLVLLRGE
Sbjct: 3 SLQNGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSKQAEREEKRVLGLVLLRGE 58
Query: 80 EVISMTVEGPPPPE 93
++SMTVEGPPP +
Sbjct: 59 NLVSMTVEGPPPKD 72
Score = 43 (20.2 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 157 LSAPPMTYPATSGGPP 172
++ P YP GGPP
Sbjct: 144 IAGAPTQYPPGRGGPP 159
Score = 34 (17.0 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 5/5 (100%), Positives = 5/5 (100%)
Query: 88 GPPPP 92
GPPPP
Sbjct: 157 GPPPP 161
>GENEDB_PFALCIPARUM|PF14_0146 [details] [associations]
symbol:PF14_0146 "ribonucleoprotein, putative"
species:5833 "Plasmodium falciparum" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:P14678 KO:K11086 HOGENOM:HOG000188899
RefSeq:XP_001348319.1 ProteinModelPortal:Q8ILU8
EnsemblProtists:PF14_0146:mRNA GeneID:811727 KEGG:pfa:PF14_0146
EuPathDB:PlasmoDB:PF3D7_1414800 ProtClustDB:CLSZ2431968
Uniprot:Q8ILU8
Length = 201
Score = 209 (78.6 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 42/93 (45%), Positives = 63/93 (67%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
M K+S++ ++ YR+RVTI D R VG F+++DRHMN+VL D EEFRK+ K+ N
Sbjct: 1 MGKNSRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKV------KSQEN 54
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEES 95
+E +R +GL+L+RGE ++S T E P ++S
Sbjct: 55 SLKEIKRVVGLILIRGENIVSFTAEQAPINKKS 87
Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 152 PPIPQLSAPPMTYP 165
P +PQL PP P
Sbjct: 185 PGVPQLPFPPNVNP 198
>UNIPROTKB|Q8ILU8 [details] [associations]
symbol:PF14_0146 "Ribonucleoprotein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0005681 GO:GO:0003676
EMBL:AE014187 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:P14678 KO:K11086
HOGENOM:HOG000188899 RefSeq:XP_001348319.1
ProteinModelPortal:Q8ILU8 EnsemblProtists:PF14_0146:mRNA
GeneID:811727 KEGG:pfa:PF14_0146 EuPathDB:PlasmoDB:PF3D7_1414800
ProtClustDB:CLSZ2431968 Uniprot:Q8ILU8
Length = 201
Score = 209 (78.6 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 42/93 (45%), Positives = 63/93 (67%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
M K+S++ ++ YR+RVTI D R VG F+++DRHMN+VL D EEFRK+ K+ N
Sbjct: 1 MGKNSRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKV------KSQEN 54
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEES 95
+E +R +GL+L+RGE ++S T E P ++S
Sbjct: 55 SLKEIKRVVGLILIRGENIVSFTAEQAPINKKS 87
Score = 38 (18.4 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 152 PPIPQLSAPPMTYP 165
P +PQL PP P
Sbjct: 185 PGVPQLPFPPNVNP 198
>ASPGD|ASPL0000075585 [details] [associations]
symbol:AN10561 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005685 "U1
snRNP" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] INTERPRO:IPR001163
GO:GO:0003676 GO:GO:0030529 EMBL:BN001303 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
OMA:PIIRPPG EnsemblFungi:CADANIAT00005970 Uniprot:C8V8F9
Length = 196
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 43/81 (53%), Positives = 58/81 (71%)
Query: 17 MRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLP-PAKGKKNNTN-EEREDRRTLGLV 74
MRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ AK N E E++RTLGL
Sbjct: 1 MRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKAKSAPGNAPLVEAEEKRTLGLT 60
Query: 75 LLRGEEVISMTVEGPPPPEES 95
++RG V+S +V+GPPP + S
Sbjct: 61 IVRGTHVVSCSVDGPPPADPS 81
>POMBASE|SPAC26A3.08 [details] [associations]
symbol:smb1 "Sm snRNP core protein Smb1" species:4896
"Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IC] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=ISO] PomBase:SPAC26A3.08
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
GO:GO:0000395 KO:K11086 HOGENOM:HOG000188899 PIR:T38396
RefSeq:NP_594151.1 ProteinModelPortal:Q10163 IntAct:Q10163
STRING:Q10163 EnsemblFungi:SPAC26A3.08.1 GeneID:2542684
KEGG:spo:SPAC26A3.08 OMA:QEYRHIK OrthoDB:EOG4JMC0B NextBio:20803732
Uniprot:Q10163
Length = 147
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 43/92 (46%), Positives = 65/92 (70%)
Query: 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN--TNE 63
++KM+ +N+ + VT +DGR VG+ +AFD MNLVL DC+E+R + KK N +N
Sbjct: 3 TTKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHI-----KKQNVPSNS 57
Query: 64 EREDRRTLGLVLLRGEEVISMTVEGPPPPEES 95
E++R LGLV+LRGE ++S++V+GPPP + S
Sbjct: 58 VYEEKRMLGLVILRGEFIVSLSVQGPPPMDPS 89
>SGD|S000000831 [details] [associations]
symbol:SMB1 "Core Sm protein Sm B" species:4932
"Saccharomyces cerevisiae" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IPI] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA] [GO:0071004
"U2-type prespliceosome" evidence=IDA] SGD:S000000831
INTERPRO:IPR001163 GO:GO:0005682 GO:GO:0003723 EMBL:BK006939
EMBL:U18778 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0046540 GO:GO:0071004 RefSeq:NP_010949.4 GeneID:856754
KEGG:sce:YER032W Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 GO:GO:0005685 RefSeq:NP_010946.3 GeneID:856751
KEGG:sce:YER029C KO:K11086 HOGENOM:HOG000188899
GeneTree:ENSGT00670000098029 OrthoDB:EOG4JMC0B EMBL:AY558450
PIR:S50487 ProteinModelPortal:P40018 SMR:P40018 DIP:DIP-843N
IntAct:P40018 MINT:MINT-515980 STRING:P40018 PaxDb:P40018
PeptideAtlas:P40018 EnsemblFungi:YER029C CYGD:YER029c OMA:RGEQILS
NextBio:982902 Genevestigator:P40018 GermOnline:YER029C
Uniprot:P40018
Length = 196
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 42/98 (42%), Positives = 62/98 (63%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR-------KLPP 53
+ ++ SS++ I+Y++RV QDGR +G+ MAFD+HMNLVL +C E R KL P
Sbjct: 4 IQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRP 63
Query: 54 AKGKKNNTNEE-REDRRTLGLVLLRGEEVISMTVEGPP 90
K K+ T + ++R LGL +LRGE+++S VE P
Sbjct: 64 RKDSKDGTTLNIKVEKRVLGLTILRGEQILSTVVEDKP 101
>UNIPROTKB|J3KRY3 [details] [associations]
symbol:SNRPN "Small nuclear ribonucleoprotein-associated
protein N" species:9606 "Homo sapiens" [GO:0005685 "U1 snRNP"
evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HGNC:HGNC:11164 ChiTaRS:SNRPN EMBL:AC124312
EMBL:AC090602 EMBL:AC090983 Ensembl:ENST00000584968 Uniprot:J3KRY3
Length = 59
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK 58
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P K+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ 58
>UNIPROTKB|Q9BRA0 [details] [associations]
symbol:LSMD1 "LSM domain-containing protein 1" species:9606
"Homo sapiens" [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0005737 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 EMBL:AF530060 EMBL:BC006407
EMBL:BC033861 EMBL:BC051846 EMBL:BC059944 IPI:IPI00304922
IPI:IPI00384274 RefSeq:NP_115732.2 UniGene:Hs.565094 HSSP:P14678
ProteinModelPortal:Q9BRA0 SMR:Q9BRA0 STRING:Q9BRA0
PhosphoSite:Q9BRA0 DMDM:74732854 PaxDb:Q9BRA0 PRIDE:Q9BRA0
DNASU:84316 Ensembl:ENST00000333775 Ensembl:ENST00000335155
GeneID:84316 KEGG:hsa:84316 UCSC:uc002giz.3 UCSC:uc002gja.3
CTD:84316 GeneCards:GC17M007761 H-InvDB:HIX0013513 HGNC:HGNC:28212
neXtProt:NX_Q9BRA0 PharmGKB:PA142671503 eggNOG:NOG295890
HOGENOM:HOG000048009 HOVERGEN:HBG107368 OMA:ENGPSTH
OrthoDB:EOG4DFPPW ChiTaRS:LSMD1 GenomeRNAi:84316 NextBio:74028
Bgee:Q9BRA0 CleanEx:HS_LSMD1 Genevestigator:Q9BRA0 Uniprot:Q9BRA0
Length = 125
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLG 72
+N MR+ + DGR LVG F+ DR N++LG +EF K P + + + R LG
Sbjct: 49 LNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLK-P-------SDSFSAGEPRVLG 100
Query: 73 LVLLRGEEVISMTVE-----GPP 90
L ++ G ++S+ V+ GPP
Sbjct: 101 LAMVPGHHIVSIEVQRESLTGPP 123
>MGI|MGI:1925554 [details] [associations]
symbol:Lsmd1 "LSM domain containing 1" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] MGI:MGI:1925554
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0005737 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AL596125 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:P14678 CTD:84316 eggNOG:NOG295890
HOGENOM:HOG000048009 HOVERGEN:HBG107368 OMA:ENGPSTH
OrthoDB:EOG4DFPPW EMBL:AK018782 EMBL:BC048499 EMBL:BC062267
IPI:IPI00458812 IPI:IPI00857947 RefSeq:NP_084359.1 UniGene:Mm.45683
ProteinModelPortal:Q9D2U5 SMR:Q9D2U5 STRING:Q9D2U5
PhosphoSite:Q9D2U5 PaxDb:Q9D2U5 PRIDE:Q9D2U5
Ensembl:ENSMUST00000144531 GeneID:78304 KEGG:mmu:78304
UCSC:uc007jqa.1 GeneTree:ENSGT00390000018418 InParanoid:Q9D2U5
NextBio:348653 Bgee:Q9D2U5 CleanEx:MM_LSMD1 Genevestigator:Q9D2U5
Uniprot:Q9D2U5
Length = 125
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 4 SKSSKMLQ-FINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
+++ + L+ +N MR+ + DGR LVG F+ DR N++LG +EF K P + +
Sbjct: 39 TRARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLK-P-------SDS 90
Query: 63 EEREDRRTLGLVLLRGEEVISMTVE 87
+ R LGL ++ G ++S+ V+
Sbjct: 91 FSAGEPRVLGLAMVPGHHIVSIEVQ 115
>DICTYBASE|DDB_G0285395 [details] [associations]
symbol:snrpD2 "putative small nuclear
ribonucleoprotein D2" species:44689 "Dictyostelium discoideum"
[GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=IEA;ISS] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR027248 dictyBase:DDB_G0285395 INTERPRO:IPR001163
GenomeReviews:CM000153_GR EMBL:AAFI02000079 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K11096
PANTHER:PTHR12777 OMA:VKELWTE RefSeq:XP_638255.1 HSSP:P62316
ProteinModelPortal:Q54NC5 SMR:Q54NC5 STRING:Q54NC5
EnsemblProtists:DDB0233193 GeneID:8625063 KEGG:ddi:DDB_G0285395
Uniprot:Q54NC5
Length = 112
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 27/84 (32%), Positives = 52/84 (61%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPP-AKGKKNNTNEEREDRRTL 71
N ++ + +++ ++L+G+ AFDRH N+VL + +E + ++P AKGKK ++ R +
Sbjct: 30 NTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKD--RFI 87
Query: 72 GLVLLRGEEVISMTVEGP--PPPE 93
+ LRG+ VI + ++ P PP+
Sbjct: 88 SKMFLRGDSVI-LVLKNPLGAPPQ 110
>SGD|S000005091 [details] [associations]
symbol:LSM7 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP;IPI]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=NAS;IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=IMP] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005688 "U6 snRNP" evidence=IDA] SGD:S000005091
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005730 EMBL:BK006947
GO:GO:0003723 GO:GO:0008033 EMBL:Z46843 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG276686 KO:K12626 InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 OrthoDB:EOG4BGD5N
EMBL:Z71423 PIR:S55137 RefSeq:NP_014252.2 ProteinModelPortal:P53905
SMR:P53905 DIP:DIP-1419N IntAct:P53905 MINT:MINT-398907
STRING:P53905 PaxDb:P53905 PeptideAtlas:P53905 EnsemblFungi:YNL147W
GeneID:855575 KEGG:sce:YNL147W CYGD:YNL147w
GeneTree:ENSGT00510000047872 OMA:ENNTELI NextBio:979694
Genevestigator:P53905 GermOnline:YNL147W Uniprot:P53905
Length = 115
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/81 (30%), Positives = 47/81 (58%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
+ ++ + ++RV + G+ ++G +D+ MNLVL D E+ P +NNT ++
Sbjct: 30 LAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPD---DENNTELISKNA 86
Query: 69 RTLGLVLLRGEEVISMT-VEG 88
R LGL ++RG ++S++ EG
Sbjct: 87 RKLGLTVIRGTILVSLSSAEG 107
>WB|WBGene00004917 [details] [associations]
symbol:snr-4 species:6239 "Caenorhabditis elegans"
[GO:0000003 "reproduction" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0032940 "secretion by cell" evidence=IMP] [GO:0040027 "negative
regulation of vulval development" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] InterPro:IPR027248
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0006915 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0032940 GO:GO:0008380 GO:GO:0006397
GO:GO:0030529 GO:GO:0007281 GO:GO:0040027 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:Z78012 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOGENOM:HOG000223545 KO:K11096
PANTHER:PTHR12777 PIR:T20151 RefSeq:NP_506004.1
ProteinModelPortal:Q18786 SMR:Q18786 DIP:DIP-27008N IntAct:Q18786
MINT:MINT-1076870 STRING:Q18786 PaxDb:Q18786
EnsemblMetazoa:C52E4.3.1 EnsemblMetazoa:C52E4.3.2
EnsemblMetazoa:C52E4.3.3 GeneID:179639 KEGG:cel:CELE_C52E4.3
UCSC:C52E4.3.2 CTD:179639 WormBase:C52E4.3
GeneTree:ENSGT00390000017608 InParanoid:Q18786 OMA:VKELWTE
NextBio:906258 Uniprot:Q18786
Length = 118
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNTNEEREDRRTL 71
N+++ + ++ ++L+G+ AFDRH N+VL + +E + ++P KGKK + ++ R +
Sbjct: 39 NHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKD--RFI 96
Query: 72 GLVLLRGEEVISMTVEGP 89
+ LRG+ VI + V+ P
Sbjct: 97 SKMFLRGDSVI-LVVKNP 113
>UNIPROTKB|Q18786 [details] [associations]
symbol:snr-4 "Probable small nuclear ribonucleoprotein Sm
D2" species:6239 "Caenorhabditis elegans" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR027248 INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0032940 GO:GO:0008380 GO:GO:0006397 GO:GO:0030529
GO:GO:0007281 GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:Z78012 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
PIR:T20151 RefSeq:NP_506004.1 ProteinModelPortal:Q18786 SMR:Q18786
DIP:DIP-27008N IntAct:Q18786 MINT:MINT-1076870 STRING:Q18786
PaxDb:Q18786 EnsemblMetazoa:C52E4.3.1 EnsemblMetazoa:C52E4.3.2
EnsemblMetazoa:C52E4.3.3 GeneID:179639 KEGG:cel:CELE_C52E4.3
UCSC:C52E4.3.2 CTD:179639 WormBase:C52E4.3
GeneTree:ENSGT00390000017608 InParanoid:Q18786 OMA:VKELWTE
NextBio:906258 Uniprot:Q18786
Length = 118
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/78 (32%), Positives = 49/78 (62%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNTNEEREDRRTL 71
N+++ + ++ ++L+G+ AFDRH N+VL + +E + ++P KGKK + ++ R +
Sbjct: 39 NHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKD--RFI 96
Query: 72 GLVLLRGEEVISMTVEGP 89
+ LRG+ VI + V+ P
Sbjct: 97 SKMFLRGDSVI-LVVKNP 113
>DICTYBASE|DDB_G0277107 [details] [associations]
symbol:lsm3 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0277107
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000151_GR
GO:GO:0003723 GO:GO:0006402 EMBL:AAFI02000019 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 KO:K12622
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG236203 OMA:MVFVRGD RefSeq:XP_001134590.1
ProteinModelPortal:Q1ZXK3 STRING:Q1ZXK3 EnsemblProtists:DDB0233377
GeneID:8620835 KEGG:ddi:DDB_G0277107 ProtClustDB:CLSZ2445184
Uniprot:Q1ZXK3
Length = 97
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE--REDRRT 70
++ R+ V ++ R+L GK A+D+H+N++L D EE K+ K T+EE R +R
Sbjct: 20 LDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVE---KDEETDEEIIRNIKRN 76
Query: 71 LGLVLLRGEEVISMTVEGPP 90
+ ++ +RG+ VI ++ PP
Sbjct: 77 IKMLFVRGDGVILIS---PP 93
>TAIR|locus:2036257 [details] [associations]
symbol:LSM3B "AT1G76860" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] INTERPRO:IPR001163 EMBL:CP002684
GenomeReviews:CT485782_GR InterPro:IPR010920 SUPFAM:SSF50182
KO:K12622 EMBL:AC079283 UniGene:At.26946 UniGene:At.64098
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
HOGENOM:HOG000223550 OMA:MVFVRGD HSSP:Q8ZYG5 EMBL:AY086266
EMBL:BT025575 IPI:IPI00540699 PIR:D96797 RefSeq:NP_177812.1
ProteinModelPortal:Q9C6K5 SMR:Q9C6K5 STRING:Q9C6K5 PaxDb:Q9C6K5
PRIDE:Q9C6K5 EnsemblPlants:AT1G76860.1 GeneID:844021
KEGG:ath:AT1G76860 TAIR:At1g76860 InParanoid:Q9C6K5
PhylomeDB:Q9C6K5 ProtClustDB:CLSN2679472 Genevestigator:Q9C6K5
Uniprot:Q9C6K5
Length = 98
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 28/80 (35%), Positives = 48/80 (60%)
Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE--REDRRT 70
++ R+ V ++ R+L GK AFD+H+N++LGD EE + + + T EE R +RT
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEE--TITTVE-IDDETYEEIVRTTKRT 76
Query: 71 LGLVLLRGEEVISMTVEGPP 90
+ + +RG+ VI ++ PP
Sbjct: 77 IEFLFVRGDGVILVS---PP 93
>WB|WBGene00003081 [details] [associations]
symbol:lsm-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
+ +F++ +RV Q GR+ G FD+ +N+VL DC E+ + P N + ++
Sbjct: 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDP------QNPSVVGDET 69
Query: 69 RTLGLVLLRGEEVISMTVEGP 89
R LGL++ RG + TV P
Sbjct: 70 RQLGLIVARGTAI---TVVSP 87
>UNIPROTKB|Q23543 [details] [associations]
symbol:lsm-7 "Protein LSM-7" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
+ +F++ +RV Q GR+ G FD+ +N+VL DC E+ + P N + ++
Sbjct: 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDP------QNPSVVGDET 69
Query: 69 RTLGLVLLRGEEVISMTVEGP 89
R LGL++ RG + TV P
Sbjct: 70 RQLGLIVARGTAI---TVVSP 87
>TAIR|locus:2014922 [details] [associations]
symbol:LSM3A "AT1G21190" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] INTERPRO:IPR001163 EMBL:CP002684
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622 EMBL:AC036104
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223550
HSSP:Q8ZYG5 ProtClustDB:CLSN2679472 EMBL:AF334722 IPI:IPI00535788
PIR:B86345 RefSeq:NP_173542.1 UniGene:At.15544
ProteinModelPortal:Q9LMN4 SMR:Q9LMN4 STRING:Q9LMN4 PRIDE:Q9LMN4
EnsemblPlants:AT1G21190.1 GeneID:838714 KEGG:ath:AT1G21190
TAIR:At1g21190 InParanoid:Q9LMN4 OMA:IEERIYV PhylomeDB:Q9LMN4
ArrayExpress:Q9LMN4 Genevestigator:Q9LMN4 Uniprot:Q9LMN4
Length = 97
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE--REDRRT 70
I R+ V ++ R+L GK AFD+H+N++LGD EE + T EE R +RT
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEID---DETYEEIVRTTKRT 76
Query: 71 LGLVLLRGEEVISMTVEGPP 90
+ + +RG+ VI ++ PP
Sbjct: 77 VPFLFVRGDGVILVS---PP 93
>FB|FBgn0051950 [details] [associations]
symbol:CG31950 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
INTERPRO:IPR001163 EMBL:AE014134 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:P14678
GeneTree:ENSGT00390000018418 EMBL:BT044300 RefSeq:NP_722859.1
UniGene:Dm.23802 SMR:Q8IPZ7 EnsemblMetazoa:FBtr0077630
EnsemblMetazoa:FBtr0332457 GeneID:319043 KEGG:dme:Dmel_CG31950
UCSC:CG31950-RA FlyBase:FBgn0051950 InParanoid:Q8IPZ7 OMA:TDRDANI
OrthoDB:EOG4CRJGH GenomeRNAi:319043 NextBio:847056 Uniprot:Q8IPZ7
Length = 121
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 8 KMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEERED 67
K+ +++ +R+ I DGR LVG F DR N+VL C E+ E ++
Sbjct: 44 KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEYLV-------------EGQE 90
Query: 68 RRTLGLVLLRGEEVISMTVEGPPP 91
R LG V++ G+ ++S++++ P P
Sbjct: 91 PRLLGNVMVPGQHIVSLSIDEPDP 114
>GENEDB_PFALCIPARUM|PFL0460w [details] [associations]
symbol:PFL0460w "u6 snRNA-associated Sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005634
"nucleus" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] INTERPRO:IPR001163 GO:GO:0005681
EMBL:AE014188 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 RefSeq:XP_001350501.1 HSSP:O29885
ProteinModelPortal:Q8I5V6 PRIDE:Q8I5V6
EnsemblProtists:PFL0460w:mRNA GeneID:811145 KEGG:pfa:PFL0460w
EuPathDB:PlasmoDB:PF3D7_1209200 ProtClustDB:CLSZ2431821
Uniprot:Q8I5V6
Length = 108
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 11 QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRT 70
+F+N ++RV GR++VG + D NLVL EE+ + P N++ + R+
Sbjct: 23 KFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDP------NDSFVVTDKTRS 76
Query: 71 LGLVLLRGEEVISMT-VEG 88
+GL++ RG V +T VEG
Sbjct: 77 IGLIVARGTSVALITPVEG 95
>UNIPROTKB|Q8I5V6 [details] [associations]
symbol:PFL0460w "Lsm7 homologue, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=ISS]
INTERPRO:IPR001163 GO:GO:0005681 EMBL:AE014188 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 HOGENOM:HOG000223548
RefSeq:XP_001350501.1 HSSP:O29885 ProteinModelPortal:Q8I5V6
PRIDE:Q8I5V6 EnsemblProtists:PFL0460w:mRNA GeneID:811145
KEGG:pfa:PFL0460w EuPathDB:PlasmoDB:PF3D7_1209200
ProtClustDB:CLSZ2431821 Uniprot:Q8I5V6
Length = 108
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 11 QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRT 70
+F+N ++RV GR++VG + D NLVL EE+ + P N++ + R+
Sbjct: 23 KFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDP------NDSFVVTDKTRS 76
Query: 71 LGLVLLRGEEVISMT-VEG 88
+GL++ RG V +T VEG
Sbjct: 77 IGLIVARGTSVALITPVEG 95
>TAIR|locus:2043323 [details] [associations]
symbol:AT2G47640 "AT2G47640" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510 "RNA
methylation" evidence=RCA] InterPro:IPR027248 INTERPRO:IPR001163
GO:GO:0005829 EMBL:CP002686 EMBL:CP002685 GO:GO:0005730
GO:GO:0003676 EMBL:AC005309 GO:GO:0030529 EMBL:AC002535
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
OMA:VKELWTE HSSP:P62316 IPI:IPI00543985 RefSeq:NP_001078076.1
RefSeq:NP_566107.1 RefSeq:NP_567134.3 UniGene:At.23561
UniGene:At.27002 UniGene:At.36335 UniGene:At.63633
ProteinModelPortal:Q8RUH0 SMR:Q8RUH0 IntAct:Q8RUH0 STRING:Q8RUH0
PRIDE:Q8RUH0 EnsemblPlants:AT2G47640.1 EnsemblPlants:AT2G47640.4
EnsemblPlants:AT3G62840.1 GeneID:819377 GeneID:825459
KEGG:ath:AT2G47640 KEGG:ath:AT3G62840 TAIR:At2g47640 TAIR:At3g62840
InParanoid:Q8RUH0 PhylomeDB:Q8RUH0 ProtClustDB:CLSN2688988
ArrayExpress:Q8RUH0 Genevestigator:Q8RUH0 Uniprot:Q8RUH0
Length = 109
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNTNEEREDRRTL 71
N ++ + ++ R+L+G+ AFDRH N+VL + E + ++P KGKK R+ R +
Sbjct: 34 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRD--RFI 91
Query: 72 GLVLLRGEEVI 82
+ LRG+ VI
Sbjct: 92 SKMFLRGDSVI 102
>TAIR|locus:2081685 [details] [associations]
symbol:AT3G62840 "AT3G62840" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR027248 INTERPRO:IPR001163 GO:GO:0005829
EMBL:CP002686 EMBL:CP002685 GO:GO:0005730 GO:GO:0003676
EMBL:AC005309 GO:GO:0030529 EMBL:AC002535 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777 OMA:VKELWTE
HSSP:P62316 IPI:IPI00543985 RefSeq:NP_001078076.1
RefSeq:NP_566107.1 RefSeq:NP_567134.3 UniGene:At.23561
UniGene:At.27002 UniGene:At.36335 UniGene:At.63633
ProteinModelPortal:Q8RUH0 SMR:Q8RUH0 IntAct:Q8RUH0 STRING:Q8RUH0
PRIDE:Q8RUH0 EnsemblPlants:AT2G47640.1 EnsemblPlants:AT2G47640.4
EnsemblPlants:AT3G62840.1 GeneID:819377 GeneID:825459
KEGG:ath:AT2G47640 KEGG:ath:AT3G62840 TAIR:At2g47640 TAIR:At3g62840
InParanoid:Q8RUH0 PhylomeDB:Q8RUH0 ProtClustDB:CLSN2688988
ArrayExpress:Q8RUH0 Genevestigator:Q8RUH0 Uniprot:Q8RUH0
Length = 109
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNTNEEREDRRTL 71
N ++ + ++ R+L+G+ AFDRH N+VL + E + ++P KGKK R+ R +
Sbjct: 34 NTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNRD--RFI 91
Query: 72 GLVLLRGEEVI 82
+ LRG+ VI
Sbjct: 92 SKMFLRGDSVI 102
>FB|FBgn0261789 [details] [associations]
symbol:SmD2 "Small ribonucleoprotein particle protein SmD2"
species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0007052 "mitotic spindle
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR027248 INTERPRO:IPR001163
EMBL:AE014297 GO:GO:0007067 GO:GO:0007052 GO:GO:0022008
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11096 PANTHER:PTHR12777
GeneTree:ENSGT00390000017608 OMA:VKELWTE EMBL:AY069315
RefSeq:NP_649645.1 UniGene:Dm.9898 ProteinModelPortal:Q9VI10
SMR:Q9VI10 DIP:DIP-20721N IntAct:Q9VI10 MINT:MINT-768757
STRING:Q9VI10 PaxDb:Q9VI10 PRIDE:Q9VI10 EnsemblMetazoa:FBtr0081737
GeneID:40781 KEGG:dme:Dmel_CG1249 UCSC:CG1249-RA CTD:40781
FlyBase:FBgn0261789 InParanoid:Q9VI10 OrthoDB:EOG4K98VQ
PhylomeDB:Q9VI10 GenomeRNAi:40781 NextBio:820557 Bgee:Q9VI10
GermOnline:CG1249 Uniprot:Q9VI10
Length = 119
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLP-PAKGKKNNTNEEREDRRTL 71
N ++ + ++ ++L+G+ AFDRH N+VL + +E + +LP KGKK +DR +
Sbjct: 38 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKK-VKPVNKDR-FI 95
Query: 72 GLVLLRGEEVISMTVEGP 89
+ LRG+ VI + + P
Sbjct: 96 SKMFLRGDSVI-LVLRNP 112
>UNIPROTKB|G3X6Z3 [details] [associations]
symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR027248 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 UniGene:Bt.46839 NextBio:20871576
PANTHER:PTHR12777 GeneTree:ENSGT00390000017608 OMA:VKELWTE
EMBL:DAAA02047376 Ensembl:ENSBTAT00000016153 Uniprot:G3X6Z3
Length = 117
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNTNEEREDRRTL 71
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + KGKK + ++ R +
Sbjct: 38 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKD--RYI 95
Query: 72 GLVLLRGEEVI 82
+ LRG+ VI
Sbjct: 96 SKMFLRGDSVI 106
>UNIPROTKB|Q3SZF8 [details] [associations]
symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=IEA] InterPro:IPR027248
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 EMBL:BC102877
IPI:IPI00687015 RefSeq:NP_001029648.1 UniGene:Bt.46839
ProteinModelPortal:Q3SZF8 SMR:Q3SZF8 STRING:Q3SZF8 PRIDE:Q3SZF8
GeneID:514932 KEGG:bta:514932 CTD:6633 HOGENOM:HOG000223545
HOVERGEN:HBG054415 InParanoid:Q3SZF8 KO:K11096 OrthoDB:EOG4PC9TN
NextBio:20871576 PANTHER:PTHR12777 Uniprot:Q3SZF8
Length = 118
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNTNEEREDRRTL 71
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + KGKK + ++ R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKD--RYI 96
Query: 72 GLVLLRGEEVI 82
+ LRG+ VI
Sbjct: 97 SKMFLRGDSVI 107
>UNIPROTKB|F1PSI7 [details] [associations]
symbol:SNRPD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030532 "small nuclear ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR027248 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
CTD:6633 KO:K11096 PANTHER:PTHR12777 GeneTree:ENSGT00390000017608
OMA:VKELWTE EMBL:AAEX03000871 RefSeq:NP_001239341.1
ProteinModelPortal:F1PSI7 Ensembl:ENSCAFT00000007082
GeneID:100685983 KEGG:cfa:100685983 Uniprot:F1PSI7
Length = 118
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNTNEEREDRRTL 71
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + KGKK + ++ R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKD--RYI 96
Query: 72 GLVLLRGEEVI 82
+ LRG+ VI
Sbjct: 97 SKMFLRGDSVI 107
>UNIPROTKB|P62316 [details] [associations]
symbol:SNRPD2 "Small nuclear ribonucleoprotein Sm D2"
species:9606 "Homo sapiens" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0000245 "spliceosomal complex assembly"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS]
[GO:0000387 "spliceosomal snRNP assembly" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR027248
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
EMBL:CH471126 GO:GO:0003676 GO:GO:0030529 GO:GO:0000387
GO:GO:0034660 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0030532 GO:GO:0000245 GO:GO:0005689 EMBL:AC007191 PDB:3S6N
PDBsum:3S6N Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1
PDB:3PGW PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D
PDBsum:3CW1 PDBsum:3PGW PDB:1B34 PDBsum:1B34 CleanEx:HS_SNRPD1
CTD:6633 HOGENOM:HOG000223545 HOVERGEN:HBG054415 KO:K11096
OrthoDB:EOG4PC9TN PANTHER:PTHR12777 OMA:VKELWTE EMBL:U15008
EMBL:AK291912 EMBL:BC000486 EMBL:BC001930 EMBL:BU531743
IPI:IPI00017963 PIR:I38861 RefSeq:NP_004588.1 RefSeq:NP_808210.2
UniGene:Hs.515472 ProteinModelPortal:P62316 SMR:P62316
DIP:DIP-31219N IntAct:P62316 MINT:MINT-5002672 STRING:P62316
PhosphoSite:P62316 DMDM:51338666 PaxDb:P62316 PeptideAtlas:P62316
PRIDE:P62316 DNASU:6633 Ensembl:ENST00000342669
Ensembl:ENST00000391932 GeneID:6633 KEGG:hsa:6633 UCSC:uc002pcv.3
GeneCards:GC19M046190 HGNC:HGNC:11159 HPA:HPA041437 MIM:601061
neXtProt:NX_P62316 PharmGKB:PA36000 InParanoid:P62316
PhylomeDB:P62316 EvolutionaryTrace:P62316 GenomeRNAi:6633
NextBio:25839 Bgee:P62316 CleanEx:HS_SNRPD2 Genevestigator:P62316
GermOnline:ENSG00000125743 Uniprot:P62316
Length = 118
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNTNEEREDRRTL 71
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + KGKK + ++ R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKD--RYI 96
Query: 72 GLVLLRGEEVI 82
+ LRG+ VI
Sbjct: 97 SKMFLRGDSVI 107
>MGI|MGI:98345 [details] [associations]
symbol:Snrpd2 "small nuclear ribonucleoprotein D2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR027248 MGI:MGI:98345
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 CTD:6633
HOGENOM:HOG000223545 HOVERGEN:HBG054415 KO:K11096 OrthoDB:EOG4PC9TN
PANTHER:PTHR12777 OMA:VKELWTE EMBL:AK007389 EMBL:AK045968
EMBL:AK088105 EMBL:BC043014 EMBL:BC051208 IPI:IPI00119220
RefSeq:NP_081219.1 UniGene:Mm.29135 ProteinModelPortal:P62317
SMR:P62317 MINT:MINT-124854 STRING:P62317 PhosphoSite:P62317
PaxDb:P62317 PRIDE:P62317 Ensembl:ENSMUST00000049294 GeneID:107686
KEGG:mmu:107686 InParanoid:P62317 NextBio:359250 Bgee:P62317
CleanEx:MM_SNRPD2 Genevestigator:P62317
GermOnline:ENSMUSG00000040824 Uniprot:P62317
Length = 118
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNTNEEREDRRTL 71
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + KGKK + ++ R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKD--RYI 96
Query: 72 GLVLLRGEEVI 82
+ LRG+ VI
Sbjct: 97 SKMFLRGDSVI 107
>RGD|1593018 [details] [associations]
symbol:Snrpd2 "small nuclear ribonucleoprotein D2 polypeptide"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR027248
RGD:1593018 INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:CH473979 GO:GO:0005689
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
CTD:6633 HOGENOM:HOG000223545 HOVERGEN:HBG054415 KO:K11096
OrthoDB:EOG4PC9TN PANTHER:PTHR12777 GeneTree:ENSGT00390000017608
OMA:VKELWTE EMBL:BC168781 IPI:IPI00364045 RefSeq:NP_001102869.1
RefSeq:XP_214847.2 UniGene:Rn.110465 UniGene:Rn.145735 SMR:B5DES0
STRING:B5DES0 Ensembl:ENSRNOT00000021221 GeneID:292688
GeneID:680309 KEGG:rno:292688 KEGG:rno:680309 UCSC:RGD:1593018
CTD:292688 NextBio:718422 Genevestigator:B5DES0 Uniprot:B5DES0
Length = 118
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNTNEEREDRRTL 71
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + KGKK + ++ R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKD--RYI 96
Query: 72 GLVLLRGEEVI 82
+ LRG+ VI
Sbjct: 97 SKMFLRGDSVI 107
>ZFIN|ZDB-GENE-040914-10 [details] [associations]
symbol:snrpd2 "small nuclear ribonucleoprotein D2
polypeptide" species:7955 "Danio rerio" [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR027248 INTERPRO:IPR001163 ZFIN:ZDB-GENE-040914-10
GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
CTD:6633 HOGENOM:HOG000223545 HOVERGEN:HBG054415 KO:K11096
OrthoDB:EOG4PC9TN PANTHER:PTHR12777 GeneTree:ENSGT00390000017608
OMA:VKELWTE EMBL:BX663502 EMBL:BC093003 EMBL:AL928979
IPI:IPI00493498 RefSeq:NP_001017582.1 UniGene:Dr.129790 SMR:Q567V5
STRING:Q567V5 Ensembl:ENSDART00000059194 GeneID:550244
KEGG:dre:550244 InParanoid:Q567V5 NextBio:20879507 Uniprot:Q567V5
Length = 118
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 23/71 (32%), Positives = 45/71 (63%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPA-KGKKNNTNEEREDRRTL 71
N ++ + ++ ++L+G+ AFDRH N+VL + +E + ++P + KGKK + ++ R +
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKD--RYI 96
Query: 72 GLVLLRGEEVI 82
+ LRG+ VI
Sbjct: 97 SKMFLRGDSVI 107
>FB|FBgn0051184 [details] [associations]
symbol:LSm3 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
INTERPRO:IPR001163 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0033962 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
HSSP:O29386 OrthoDB:EOG45X6CK EMBL:BT001552
ProteinModelPortal:Q8IGW7 SMR:Q8IGW7 STRING:Q8IGW7 PaxDb:Q8IGW7
PRIDE:Q8IGW7 FlyBase:FBgn0051184 InParanoid:Q8IGW7
ArrayExpress:Q8IGW7 Bgee:Q8IGW7 Uniprot:Q8IGW7
Length = 103
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 26/80 (32%), Positives = 47/80 (58%)
Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE--REDRRT 70
++ ++ V +++ R+L G+ AFD+H+N+VLGD EE T EE + +RT
Sbjct: 26 LDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEID---EETYEEVYKTAKRT 82
Query: 71 LGLVLLRGEEVISMTVEGPP 90
+ ++ +RG+ VI ++ PP
Sbjct: 83 IPMLFVRGDGVILVS---PP 99
>WB|WBGene00003077 [details] [associations]
symbol:lsm-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0000932
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550 OMA:MVFVRGD
EMBL:AL132865 HSSP:Q8ZYG5 RefSeq:NP_502579.1
ProteinModelPortal:Q9U1W8 SMR:Q9U1W8 DIP:DIP-26669N
MINT:MINT-1050579 STRING:Q9U1W8 PaxDb:Q9U1W8
EnsemblMetazoa:Y62E10A.12.1 EnsemblMetazoa:Y62E10A.12.2
GeneID:178303 KEGG:cel:CELE_Y62E10A.12 UCSC:Y62E10A.12.1 CTD:178303
WormBase:Y62E10A.12 InParanoid:Q9U1W8 NextBio:900574 Uniprot:Q9U1W8
Length = 102
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 24/80 (30%), Positives = 48/80 (60%)
Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE--REDRRT 70
++ R+ V +++ R+L G+ AFD+H+N+VL + EE + +T EE ++ +R
Sbjct: 25 LDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEE---TITTREVDEDTFEEIYKQTKRV 81
Query: 71 LGLVLLRGEEVISMTVEGPP 90
+ ++ +RG+ VI ++ PP
Sbjct: 82 VPMLFVRGDSVILVS---PP 98
>ZFIN|ZDB-GENE-030131-8284 [details] [associations]
symbol:lsm7 "LSM7 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-030131-8284 EMBL:BX908398 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG276686 KO:K12626 InterPro:IPR017132 PIRSF:PIRSF037188
CTD:51690 HOVERGEN:HBG000513 OrthoDB:EOG4GB77F
GeneTree:ENSGT00510000047872 EMBL:BC133957 IPI:IPI00610946
RefSeq:NP_001041471.1 UniGene:Dr.10033 STRING:A4FVI7
Ensembl:ENSDART00000081188 GeneID:573047 KEGG:dre:573047
InParanoid:A4FVI7 NextBio:20891033 Uniprot:A4FVI7
Length = 103
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 11 QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRT 70
++I+ +RV Q GR+ G FD +NLVL E+ + P + K ED R
Sbjct: 17 KYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLT------EDTRQ 70
Query: 71 LGLVLLRGEEVI 82
LGLV+ RG V+
Sbjct: 71 LGLVVCRGTSVV 82
>GENEDB_PFALCIPARUM|PF08_0049 [details] [associations]
symbol:PF08_0049 "ribonucleoprotein, putative"
species:5833 "Plasmodium falciparum" [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12622 EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223550 RefSeq:XP_002808862.1
ProteinModelPortal:C0H4W2 PRIDE:C0H4W2
EnsemblProtists:PF08_0049:mRNA GeneID:2655500 KEGG:pfa:PF08_0049
EuPathDB:PlasmoDB:PF3D7_0819900 ProtClustDB:CLSZ2444967
Uniprot:C0H4W2
Length = 91
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 25 RQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVI 82
R+L+GK A+D H+N++L + E K K+N+ ++ R L +V +RG+ +I
Sbjct: 30 RELIGKLDAYDNHLNMILSNVRETYKYSV---KENDEETVKKMERNLDMVFVRGDSII 84
>GENEDB_PFALCIPARUM|PFB0865w [details] [associations]
symbol:PFB0865w "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR027248 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AE001362 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
HSSP:P62316 PIR:D71604 RefSeq:XP_001349689.1
ProteinModelPortal:O96265 SMR:O96265 PRIDE:O96265
EnsemblProtists:PFB0865w:mRNA GeneID:812771 KEGG:pfa:PFB0865w
EuPathDB:PlasmoDB:PF3D7_0218500 OMA:NRKILGR ProtClustDB:CLSZ2432677
Uniprot:O96265
Length = 101
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVL-GDCEEFRKLPPAKGKKNNTNEEREDRRTLG 72
N ++ + ++ R+++G+ AFDRH NL+L G E + ++ K KK N++R +
Sbjct: 29 NAQVLINCRNNRKILGRVKAFDRHCNLLLTGVREIWVEVVKDKKKKKKINKDRY----IS 84
Query: 73 LVLLRGEEVI 82
++ LRG+ VI
Sbjct: 85 ILFLRGDSVI 94
>UNIPROTKB|O96265 [details] [associations]
symbol:PFB0865w "Small nuclear ribonucleoprotein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR027248 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AE001362 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
HSSP:P62316 PIR:D71604 RefSeq:XP_001349689.1
ProteinModelPortal:O96265 SMR:O96265 PRIDE:O96265
EnsemblProtists:PFB0865w:mRNA GeneID:812771 KEGG:pfa:PFB0865w
EuPathDB:PlasmoDB:PF3D7_0218500 OMA:NRKILGR ProtClustDB:CLSZ2432677
Uniprot:O96265
Length = 101
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVL-GDCEEFRKLPPAKGKKNNTNEEREDRRTLG 72
N ++ + ++ R+++G+ AFDRH NL+L G E + ++ K KK N++R +
Sbjct: 29 NAQVLINCRNNRKILGRVKAFDRHCNLLLTGVREIWVEVVKDKKKKKKINKDRY----IS 84
Query: 73 LVLLRGEEVI 82
++ LRG+ VI
Sbjct: 85 ILFLRGDSVI 94
>POMBASE|SPCC285.12 [details] [associations]
symbol:lsm7 "U6 snRNP-associated protein Lsm7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0030490 "maturation of
SSU-rRNA" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] PomBase:SPCC285.12 INTERPRO:IPR001163
GO:GO:0005829 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0008033 GO:GO:0006402 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490 GO:GO:0045292
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PDB:3SWN PDB:4EMK PDBsum:3SWN PDBsum:4EMK eggNOG:NOG276686
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 PIR:T41258 RefSeq:NP_588340.1
ProteinModelPortal:O74499 STRING:O74499 EnsemblFungi:SPCC285.12.1
GeneID:2538964 KEGG:spo:SPCC285.12 OrthoDB:EOG4BGD5N
EvolutionaryTrace:O74499 NextBio:20800139 Uniprot:O74499
Length = 113
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 11 QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRT 70
++ + R++ T GRQ+ G FD+ MNLVL D EE + P GK R
Sbjct: 30 RYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLR-NPEDGKLTGAI------RK 82
Query: 71 LGLVLLRGEEVI 82
LGLV++RG ++
Sbjct: 83 LGLVVVRGTTLV 94
>UNIPROTKB|Q9UK45 [details] [associations]
symbol:LSM7 "U6 snRNA-associated Sm-like protein LSm7"
species:9606 "Homo sapiens" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AF182293 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
GO:GO:0030529 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 EMBL:AC005258 EMBL:BC018621
IPI:IPI00007163 RefSeq:NP_057283.1 UniGene:Hs.512610
ProteinModelPortal:Q9UK45 SMR:Q9UK45 DIP:DIP-31129N IntAct:Q9UK45
MINT:MINT-1036641 STRING:Q9UK45 PhosphoSite:Q9UK45 DMDM:10720075
PaxDb:Q9UK45 PRIDE:Q9UK45 DNASU:51690 Ensembl:ENST00000252622
GeneID:51690 KEGG:hsa:51690 UCSC:uc002lvp.4 CTD:51690
GeneCards:GC19M002321 HGNC:HGNC:20470 HPA:HPA041850 MIM:607287
neXtProt:NX_Q9UK45 PharmGKB:PA134888612 HOGENOM:HOG000223548
HOVERGEN:HBG000513 OrthoDB:EOG4GB77F GenomeRNAi:51690 NextBio:55694
Bgee:Q9UK45 CleanEx:HS_LSM7 Genevestigator:Q9UK45
GermOnline:ENSG00000130332 Uniprot:Q9UK45
Length = 103
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 26/72 (36%), Positives = 37/72 (51%)
Query: 11 QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRT 70
++I+ +RV Q GR+ G FD +NLVL E+ + P + K ED R
Sbjct: 17 KYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLT------EDTRQ 70
Query: 71 LGLVLLRGEEVI 82
LGLV+ RG V+
Sbjct: 71 LGLVVCRGTSVV 82
>UNIPROTKB|G4MSI0 [details] [associations]
symbol:MGG_01450 "Sm snRNP core protein Sme1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR027078
INTERPRO:IPR001163 EMBL:CM001232 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K11097
PANTHER:PTHR11193 RefSeq:XP_003714403.1 ProteinModelPortal:G4MSI0
EnsemblFungi:MGG_01450T0 GeneID:2679702 KEGG:mgr:MGG_01450
Uniprot:G4MSI0
Length = 95
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 22 QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEV 81
Q G ++ GK FD MNLV+ D E +++ K+NT E+R R LG +LL+G+ V
Sbjct: 37 QLGIRIEGKIRGFDEFMNLVIDDAIEVKQIT-----KDNTEEKR---RPLGQILLKGDNV 88
>UNIPROTKB|G4N3U5 [details] [associations]
symbol:MGG_16841 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 GO:GO:0005730 EMBL:CM001233
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 RefSeq:XP_003712525.1
ProteinModelPortal:G4N3U5 EnsemblFungi:MGG_16841T0 GeneID:12985068
KEGG:mgr:MGG_16841 Uniprot:G4N3U5
Length = 95
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRG 78
V ++ R+L G+ A+D H NLVLGD EE + +++ +E + R L ++ +RG
Sbjct: 26 VKLRGDRELKGRLHAYDSHCNLVLGDVEETHYIQD----EDDESELKTVSRKLEMLFVRG 81
Query: 79 EEVISMT 85
+ V+ ++
Sbjct: 82 DSVVMIS 88
>UNIPROTKB|G4NGW0 [details] [associations]
symbol:MGG_04013 "Small nuclear ribonucleoprotein Sm D2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR027248
INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529 EMBL:CM001236
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11096 PANTHER:PTHR12777 RefSeq:XP_003719837.1
ProteinModelPortal:G4NGW0 SMR:G4NGW0 EnsemblFungi:MGG_04013T0
GeneID:2677446 KEGG:mgr:MGG_04013 Uniprot:G4NGW0
Length = 117
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKNN-TNEEREDRRTLGLVL 75
++I++ R+L+ + AFDRH N+VL + +E P A GKK N++R + +
Sbjct: 50 ISIRNNRKLLARVKAFDRHCNMVLENVKEMWTETPRLASGKKGRPVNKDR----FISKMF 105
Query: 76 LRGEEVI 82
LRG+ VI
Sbjct: 106 LRGDSVI 112
>UNIPROTKB|F1P280 [details] [associations]
symbol:LSM3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00390000013951 OMA:MVFVRGD EMBL:AADN02014130
IPI:IPI00596206 Ensembl:ENSGALT00000033548 Uniprot:F1P280
Length = 96
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE--REDRRT 70
++ R+ V +++ R+L G+ A+D+H+N++LGD EE T EE + +R
Sbjct: 19 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEID---EETYEEIYKSTKRN 75
Query: 71 LGLVLLRGEEVI 82
+ ++ +RG+ V+
Sbjct: 76 IPMLFVRGDGVV 87
>UNIPROTKB|Q32PE9 [details] [associations]
symbol:LSM3 "U6 snRNA-associated Sm-like protein LSm3"
species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 EMBL:BC108142 IPI:IPI00715218 RefSeq:NP_001032564.1
UniGene:Bt.53058 HSSP:Q5CXX3 ProteinModelPortal:Q32PE9 SMR:Q32PE9
STRING:Q32PE9 PRIDE:Q32PE9 Ensembl:ENSBTAT00000009684 GeneID:614759
KEGG:bta:614759 CTD:27258 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
HOVERGEN:HBG052368 InParanoid:Q32PE9 OMA:MVFVRGD OrthoDB:EOG42NJ20
NextBio:20899271 Uniprot:Q32PE9
Length = 102
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE--REDRRT 70
++ R+ V +++ R+L G+ A+D+H+N++LGD EE T EE + +R
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEID---EETYEEIYKSTKRN 81
Query: 71 LGLVLLRGEEVI 82
+ ++ +RG+ V+
Sbjct: 82 IPMLFVRGDGVV 93
>UNIPROTKB|P62310 [details] [associations]
symbol:LSM3 "U6 snRNA-associated Sm-like protein LSm3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AF182289 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471055
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0043928 KO:K12622 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 CTD:27258 eggNOG:NOG236203
HOGENOM:HOG000223550 HOVERGEN:HBG052368 OMA:MVFVRGD
OrthoDB:EOG42NJ20 EMBL:AJ238095 EMBL:AF182418 EMBL:CR457185
EMBL:BC007055 IPI:IPI00219229 RefSeq:NP_055278.1 UniGene:Hs.111632
ProteinModelPortal:P62310 SMR:P62310 DIP:DIP-31218N IntAct:P62310
MINT:MINT-1036960 STRING:P62310 PhosphoSite:P62310 DMDM:61227725
PaxDb:P62310 PeptideAtlas:P62310 PRIDE:P62310
Ensembl:ENST00000306024 GeneID:27258 KEGG:hsa:27258 UCSC:uc003byn.3
GeneCards:GC03P014219 HGNC:HGNC:17874 HPA:HPA044966 MIM:607283
neXtProt:NX_P62310 PharmGKB:PA134881991 InParanoid:P62310
PhylomeDB:P62310 ChiTaRS:LSM3 GenomeRNAi:27258 NextBio:50206
ArrayExpress:P62310 Bgee:P62310 CleanEx:HS_LSM3
Genevestigator:P62310 GermOnline:ENSG00000170860 Uniprot:P62310
Length = 102
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE--REDRRT 70
++ R+ V +++ R+L G+ A+D+H+N++LGD EE T EE + +R
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEID---EETYEEIYKSTKRN 81
Query: 71 LGLVLLRGEEVI 82
+ ++ +RG+ V+
Sbjct: 82 IPMLFVRGDGVV 93
>UNIPROTKB|F2Z5S4 [details] [associations]
symbol:LSM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 CTD:27258
GeneTree:ENSGT00390000013951 OMA:MVFVRGD EMBL:CU633560
RefSeq:NP_001231857.1 UniGene:Ssc.1234 ProteinModelPortal:F2Z5S4
SMR:F2Z5S4 PRIDE:F2Z5S4 Ensembl:ENSSSCT00000012698 GeneID:100514071
KEGG:ssc:100514071 Uniprot:F2Z5S4
Length = 102
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE--REDRRT 70
++ R+ V +++ R+L G+ A+D+H+N++LGD EE T EE + +R
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEID---EETYEEIYKSTKRN 81
Query: 71 LGLVLLRGEEVI 82
+ ++ +RG+ V+
Sbjct: 82 IPMLFVRGDGVV 93
>MGI|MGI:1914928 [details] [associations]
symbol:Lsm3 "LSM3 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0030629 "U6 snRNA
3'-end binding" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] MGI:MGI:1914928 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27258 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
HOVERGEN:HBG052368 OMA:MVFVRGD OrthoDB:EOG42NJ20 EMBL:AK003125
EMBL:AK007849 EMBL:AK021251 EMBL:BC054368 EMBL:BC062875
IPI:IPI00230388 RefSeq:NP_080585.1 UniGene:Mm.246693
UniGene:Mm.410956 ProteinModelPortal:P62311 SMR:P62311
STRING:P62311 PhosphoSite:P62311 REPRODUCTION-2DPAGE:IPI00230388
REPRODUCTION-2DPAGE:P62311 PaxDb:P62311 PRIDE:P62311
Ensembl:ENSMUST00000040607 GeneID:67678 KEGG:mmu:67678
UCSC:uc009cye.1 InParanoid:P62311 NextBio:325233 Bgee:P62311
Genevestigator:P62311 GermOnline:ENSMUSG00000034192 Uniprot:P62311
Length = 102
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE--REDRRT 70
++ R+ V +++ R+L G+ A+D+H+N++LGD EE T EE + +R
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEID---EETYEEIYKSTKRN 81
Query: 71 LGLVLLRGEEVI 82
+ ++ +RG+ V+
Sbjct: 82 IPMLFVRGDGVV 93
>RGD|1305971 [details] [associations]
symbol:Lsm3 "LSM3 homolog, U6 small nuclear RNA associated (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] RGD:1305971
INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:CH473957 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27258 GeneTree:ENSGT00390000013951 OMA:MVFVRGD
OrthoDB:EOG42NJ20 IPI:IPI00364533 RefSeq:NP_001100081.1
UniGene:Rn.203046 SMR:D4A7U6 Ensembl:ENSRNOT00000011557
GeneID:297455 KEGG:rno:297455 UCSC:RGD:1305971 NextBio:642291
Uniprot:D4A7U6
Length = 102
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 21/72 (29%), Positives = 42/72 (58%)
Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE--REDRRT 70
++ R+ V +++ R+L G+ A+D+H+N++LGD EE T EE + +R
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEID---EETYEEIYKSTKRN 81
Query: 71 LGLVLLRGEEVI 82
+ ++ +RG+ V+
Sbjct: 82 IPMLFVRGDGVV 93
>UNIPROTKB|G4MST0 [details] [associations]
symbol:MGG_04539 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:CM001232 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12627 RefSeq:XP_003713591.1 ProteinModelPortal:G4MST0
EnsemblFungi:MGG_04539T0 GeneID:2678209 KEGG:mgr:MGG_04539
Uniprot:G4MST0
Length = 101
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 12 FINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTL 71
+++ R+ + DGR L+G + D N++L + E R + PA G +E+ DR ++
Sbjct: 8 YVDKRVVIMTTDGRMLIGTLINSDNQANIILYNVTE-RHIAPADG-----DEDSVDRPSV 61
Query: 72 GLVLLRGEEVI 82
G ++RG ++
Sbjct: 62 GTEIIRGSTIL 72
>ASPGD|ASPL0000050456 [details] [associations]
symbol:AN1802 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] InterPro:IPR027248
INTERPRO:IPR001163 EMBL:BN001307 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223545 PANTHER:PTHR12777 OMA:VKELWTE
EnsemblFungi:CADANIAT00008450 Uniprot:C8VPG1
Length = 113
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEER 65
N ++ ++++ R+L+ + AFDRH N+VL + +E P GK N++R
Sbjct: 45 NTQVLISLRSNRKLLARVKAFDRHSNMVLENVKEMWTEPQKGGKGRPVNKDR 96
>ASPGD|ASPL0000060673 [details] [associations]
symbol:AN10007 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005730
EMBL:BN001308 GO:GO:0003676 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223550 OMA:MVFVRGD EnsemblFungi:CADANIAT00002707
Uniprot:C8VRD4
Length = 96
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRG 78
V ++ R+L G+ A+D H NLVLGD EE + + +N R ++ ++ +RG
Sbjct: 29 VKLRGDRELKGRLHAYDSHCNLVLGDVEE--TIYVVEEDENEQEHIRTIKKQEEMLFVRG 86
Query: 79 EEVI 82
+ V+
Sbjct: 87 DSVV 90
>UNIPROTKB|Q3ZBL0 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOVERGEN:HBG000513 OrthoDB:EOG4BRWND KO:K11099 EMBL:BC103236
IPI:IPI00688337 RefSeq:NP_001035633.1 UniGene:Bt.70615
ProteinModelPortal:Q3ZBL0 SMR:Q3ZBL0 STRING:Q3ZBL0 PRIDE:Q3ZBL0
Ensembl:ENSBTAT00000007241 GeneID:522621 KEGG:bta:522621 CTD:6637
GeneTree:ENSGT00510000046985 InParanoid:Q3ZBL0 OMA:ESVEMAP
NextBio:20873564 Uniprot:Q3ZBL0
Length = 76
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MS + ++ +F++ ++ + + GR + G FD MNLV+ +C E G++NN
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMA----TSGQQNN 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISM 84
+G+V++RG +I +
Sbjct: 57 ----------IGMVVIRGNSIIML 70
>UNIPROTKB|P62308 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0005681 "spliceosomal complex" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=NAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0005683 "U7 snRNP"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0000387 "spliceosomal snRNP assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471053 GO:GO:0005654
Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0000245 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005689 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 HOVERGEN:HBG000513
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A
PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW
UniGene:Hs.631639 KO:K11099 CTD:6637 OMA:ESVEMAP EMBL:X85373
EMBL:CR456918 EMBL:AC079338 EMBL:BC000070 EMBL:BC022432
EMBL:BC066302 EMBL:BC070166 EMBL:BC071880 EMBL:BC106055
IPI:IPI00016572 PIR:S55054 RefSeq:NP_003087.1 UniGene:Hs.465167
UniGene:Hs.516076 UniGene:Hs.654528 ProteinModelPortal:P62308
SMR:P62308 DIP:DIP-34627N IntAct:P62308 MINT:MINT-1527983
STRING:P62308 PhosphoSite:P62308 DMDM:59800216 PeptideAtlas:P62308
PRIDE:P62308 DNASU:6637 Ensembl:ENST00000272348 GeneID:6637
KEGG:hsa:6637 UCSC:uc002sgp.3 GeneCards:GC02M070508 HGNC:HGNC:11163
MIM:603542 neXtProt:NX_P62308 PharmGKB:PA36004 InParanoid:P62308
PhylomeDB:P62308 ChiTaRS:SNRPG EvolutionaryTrace:P62308
GenomeRNAi:6637 NextBio:25857 ArrayExpress:P62308 Bgee:P62308
CleanEx:HS_SNRPG Genevestigator:P62308 GermOnline:ENSG00000143977
Uniprot:P62308
Length = 76
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MS + ++ +F++ ++ + + GR + G FD MNLV+ +C E G++NN
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMA----TSGQQNN 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISM 84
+G+V++RG +I +
Sbjct: 57 ----------IGMVVIRGNSIIML 70
>UNIPROTKB|F2Z5V2 [details] [associations]
symbol:LOC100525867 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K11099
GeneTree:ENSGT00510000046985 OMA:ESVEMAP EMBL:FP476045
RefSeq:XP_003125100.1 UniGene:Ssc.27001 ProteinModelPortal:F2Z5V2
SMR:F2Z5V2 PRIDE:F2Z5V2 Ensembl:ENSSSCT00000031595 GeneID:100525867
KEGG:ssc:100525867 Uniprot:F2Z5V2
Length = 76
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MS + ++ +F++ ++ + + GR + G FD MNLV+ +C E G++NN
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMA----TSGQQNN 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISM 84
+G+V++RG +I +
Sbjct: 57 ----------IGMVVIRGNSIIML 70
>RGD|1584713 [details] [associations]
symbol:Snrpg "small nuclear ribonucleoprotein polypeptide G"
species:10116 "Rattus norvegicus" [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] RGD:1584713 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:CH473957 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
KO:K11099 CTD:6637 GeneTree:ENSGT00510000046985 OMA:ESVEMAP
EMBL:BC168750 IPI:IPI00211261 RefSeq:NP_001128557.1
RefSeq:XP_001079708.1 RefSeq:XP_003748887.1 UniGene:Rn.2397
SMR:B5DEP7 STRING:B5DEP7 Ensembl:ENSRNOT00000022367 GeneID:681031
GeneID:687679 KEGG:rno:681031 KEGG:rno:687679 UCSC:RGD:1584713
RGD:2321722 NextBio:720014 Genevestigator:B5DEP7 Uniprot:B5DEP7
Length = 76
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MS + ++ +F++ ++ + + GR + G FD MNLV+ +C E G++NN
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMA----TSGQQNN 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISM 84
+G+V++RG +I +
Sbjct: 57 ----------IGMVVIRGNSIIML 70
>SGD|S000003660 [details] [associations]
symbol:LSM1 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000339 "RNA cap binding"
evidence=IGI;IMP;IPI] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA;IMP;IDA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI;IMP]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IGI;IMP;IPI] [GO:0005845 "mRNA
cap binding complex" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] SGD:S000003660 INTERPRO:IPR001163 GO:GO:0005634
EMBL:BK006943 GO:GO:0006397 GO:GO:0000932 GO:GO:0005845
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000290 Pfam:PF01423
GO:GO:0000339 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 HOGENOM:HOG000223544 KO:K12620
eggNOG:COG1958 OrthoDB:EOG4GQTF9 EMBL:Z49399 EMBL:AY558307
PIR:S56905 RefSeq:NP_012411.1 ProteinModelPortal:P47017 SMR:P47017
DIP:DIP-1330N IntAct:P47017 MINT:MINT-390497 STRING:P47017
PaxDb:P47017 PeptideAtlas:P47017 EnsemblFungi:YJL124C GeneID:853318
KEGG:sce:YJL124C CYGD:YJL124c OMA:FMVRGEN NextBio:973666
Genevestigator:P47017 GermOnline:YJL124C Uniprot:P47017
Length = 172
Score = 93 (37.8 bits), Expect = 0.00083, P = 0.00083
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
+ + ++ ++ ++ ++ V ++DGR L G FD++ NL+L DC E ++N
Sbjct: 39 NFTTTAAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYF----SEENKY 94
Query: 62 NEEREDRRTLGLVLLRGEEVISM 84
EE DR G+ ++RGE V+ +
Sbjct: 95 AEE--DR---GIFMIRGENVVML 112
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 286 133 0.00091 102 3 11 22 0.43 31
30 0.43 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 82
No. of states in DFA: 540 (57 KB)
Total size of DFA: 114 KB (2076 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 15.85u 0.13s 15.98t Elapsed: 00:00:00
Total cpu time: 15.86u 0.13s 15.99t Elapsed: 00:00:00
Start: Sat May 11 13:57:58 2013 End: Sat May 11 13:57:58 2013