BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023166
(286 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255578055|ref|XP_002529898.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530625|gb|EEF32501.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 319 bits (818), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 183/227 (80%), Positives = 188/227 (82%), Gaps = 17/227 (7%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQ INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN
Sbjct: 1 MSMSKSSKMLQHINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
EEREDRRTLGLVLLRGEEVISMTVEGPPP EESRAKAVSA+AVAGPGIGRAAGRG+P
Sbjct: 61 --EEREDRRTLGLVLLRGEEVISMTVEGPPPQEESRAKAVSATAVAGPGIGRAAGRGIPT 118
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQM 180
APL+QAQPGLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPM+YP PPVIRPPGQM
Sbjct: 119 APLIQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYP-----PPVIRPPGQM 173
Query: 181 PPPVYPGQGPPMARGPPPQGPPQGFGVRPP---QQFPM-PPQQFGQR 223
PP FG RPP Q FPM PP QFGQR
Sbjct: 174 ------AFPGQGPPPMGRGPPPPQFGARPPPPGQGFPMPPPPQFGQR 214
>gi|255578051|ref|XP_002529896.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530623|gb|EEF32499.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 317 bits (813), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 182/227 (80%), Positives = 187/227 (82%), Gaps = 17/227 (7%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQ INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN
Sbjct: 1 MSMSKSSKMLQHINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
EEREDRRTLGLVLLRGEEVISMTVEGPPP EESRAKAVSA+AVAGPGIGRAAGRG+P
Sbjct: 61 --EEREDRRTLGLVLLRGEEVISMTVEGPPPQEESRAKAVSATAVAGPGIGRAAGRGIPT 118
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQM 180
APL+QAQPGLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPM+YP PPVIRPPGQM
Sbjct: 119 APLIQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMSYP-----PPVIRPPGQM 173
Query: 181 PPPVYPGQGPPMARGPPPQGPPQGFGVRPP---QQFPM-PPQQFGQR 223
PP FG RPP Q FPM PP FGQR
Sbjct: 174 ------AFPGQGPPPMGRGPPPPQFGARPPPPGQGFPMPPPPHFGQR 214
>gi|357494377|ref|XP_003617477.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355518812|gb|AET00436.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
Length = 394
Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/209 (80%), Positives = 184/209 (88%), Gaps = 13/209 (6%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MS+SKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK
Sbjct: 1 MSLSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKT- 59
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
T+ +REDRRTLGLVLLRGEEVISM VEGPPPPEESR+KAV+A+A+AGPGIGRAAGRG+P
Sbjct: 60 TDGDREDRRTLGLVLLRGEEVISMAVEGPPPPEESRSKAVNAAAMAGPGIGRAAGRGIPP 119
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQM 180
AP++QAQPGLAGPVRGVGGPAPGMMQPQISRPP+ +YP GGPPV+RPPGQM
Sbjct: 120 APVIQAQPGLAGPVRGVGGPAPGMMQPQISRPPV--------SYP---GGPPVMRPPGQM 168
Query: 181 PPPVYPGQGPP-MARGPPPQGPPQGFGVR 208
P P +PGQGPP M RGPPP PP FG R
Sbjct: 169 PYPGHPGQGPPQMVRGPPPPMPPGQFGQR 197
>gi|224115254|ref|XP_002332199.1| predicted protein [Populus trichocarpa]
gi|222875306|gb|EEF12437.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 306 bits (784), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 199/235 (84%), Positives = 209/235 (88%), Gaps = 8/235 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN
Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSA+A +GPG+GRAAGRG+P
Sbjct: 61 --EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSAAAASGPGLGRAAGRGIPT 118
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATS----GGPPVIRP 176
APL+QAQPGLAGPVRGVGGP+PGMMQPQ RPP+PQ SAPPMTYPA+S GG PV+RP
Sbjct: 119 APLIQAQPGLAGPVRGVGGPSPGMMQPQFMRPPVPQHSAPPMTYPASSAPPPGGAPVVRP 178
Query: 177 PGQMPPPVYPGQGPPMARGPPPQGPPQGFGVRPPQQFPMPPQQFGQRPMVPPPPG 231
PGQMPP YPGQGPPM RGPPP GP Q F RPPQ FPMPP QF QRPM PP G
Sbjct: 179 PGQMPPGPYPGQGPPMGRGPPPPGPLQ-FSARPPQGFPMPP-QFAQRPMGMPPQG 231
>gi|449433521|ref|XP_004134546.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
gi|449490639|ref|XP_004158663.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
Length = 284
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 168/191 (87%), Positives = 179/191 (93%), Gaps = 8/191 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK
Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-- 58
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
TNEER++RRTLGLVLLRGEEVISMTVEGPPP EESRAKAV+A+A+AGPGIGRAAGRG+P
Sbjct: 59 TNEERDERRTLGLVLLRGEEVISMTVEGPPPAEESRAKAVNAAAMAGPGIGRAAGRGIPT 118
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQM 180
APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPMTYPA P+IRPPGQM
Sbjct: 119 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAA----PIIRPPGQM 174
Query: 181 PPPVYPGQGPP 191
P++PGQ PP
Sbjct: 175 --PMFPGQAPP 183
>gi|356501499|ref|XP_003519562.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 282
Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 158/181 (87%), Positives = 169/181 (93%), Gaps = 4/181 (2%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK
Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPA 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
+REDRRTLGLVLLRGEEVISMTVEGPPPPEESR+KAV A+A+AGPGIGRAAGRG+P
Sbjct: 61 EGADREDRRTLGLVLLRGEEVISMTVEGPPPPEESRSKAVGAAALAGPGIGRAAGRGIPP 120
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQM 180
AP+VQAQPGLAGPVRGVGGPAPGMMQPQISRP PQL+APP++YP GGPPV+RPPGQM
Sbjct: 121 APVVQAQPGLAGPVRGVGGPAPGMMQPQISRP--PQLNAPPVSYPG--GGPPVMRPPGQM 176
Query: 181 P 181
P
Sbjct: 177 P 177
>gi|225463717|ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
[Vitis vinifera]
gi|147774905|emb|CAN61706.1| hypothetical protein VITISV_001610 [Vitis vinifera]
Length = 276
Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 181/210 (86%), Positives = 189/210 (90%), Gaps = 11/210 (5%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK
Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-- 58
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
NEERE+RRTLGLVLLRGEEVISMTVEGPPPPEESRAKAV A+A+AGPGIGRAAGRG+P
Sbjct: 59 -NEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVGAAAMAGPGIGRAAGRGIPT 117
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQM 180
APL+QAQPGLAGPVRGVGGPAPGMMQPQISRPP+PQLSAPPMTYPA PVIRPPGQM
Sbjct: 118 APLIQAQPGLAGPVRGVGGPAPGMMQPQISRPPVPQLSAPPMTYPAA----PVIRPPGQM 173
Query: 181 PPPVYPGQGPP-MARGPPPQGPPQGFGVRP 209
P YPGQ PP +ARGPPP P Q F RP
Sbjct: 174 PG--YPGQAPPQIARGPPPPVPAQ-FAARP 200
>gi|118482995|gb|ABK93409.1| unknown [Populus trichocarpa]
Length = 286
Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 222/272 (81%), Positives = 230/272 (84%), Gaps = 14/272 (5%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN
Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSA+AVAGPG+GRAAGRG+P
Sbjct: 61 --EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSAAAVAGPGLGRAAGRGIPT 118
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSG----GPPVIRP 176
APLVQAQPGLAGPVRGVGGP+PGMMQPQ+SRP QLSAPPMTYPA SG G P++RP
Sbjct: 119 APLVQAQPGLAGPVRGVGGPSPGMMQPQLSRP---QLSAPPMTYPAGSGLPTGGAPILRP 175
Query: 177 PGQMPPPVYPGQGPPMARGPPPQGPPQGFGVRPPQQFPMPPQQFGQRPMV-PPPPGPMMR 235
PGQMPP Y GQG PM RGPPP GPPQ F RPPQ FPMPPQ F QRPM PP P M
Sbjct: 176 PGQMPPMPYSGQGQPMGRGPPPPGPPQ-FAARPPQGFPMPPQ-FAQRPMGGPPQPQVQMM 233
Query: 236 GPPSGPPRPGMPNAPPPRPGMPPPP--GAPVF 265
P PPRPGMP PPPRPGMP PP PVF
Sbjct: 234 RGPPAPPRPGMPAPPPPRPGMPLPPGGHVPVF 265
>gi|356553373|ref|XP_003545031.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 281
Score = 299 bits (766), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 157/181 (86%), Positives = 169/181 (93%), Gaps = 4/181 (2%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK
Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPA 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
+REDRRTLGLVLLRGEEVISMTVEGPPPPEESR+KAV A+A+AGPGIGRAAGRG+P
Sbjct: 61 EGGDREDRRTLGLVLLRGEEVISMTVEGPPPPEESRSKAVGAAALAGPGIGRAAGRGIPP 120
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQM 180
AP+VQAQPGLAGPVRG+GGPAPGMMQPQISRP PQL+APP++YP GGPPV+RPPGQM
Sbjct: 121 APVVQAQPGLAGPVRGMGGPAPGMMQPQISRP--PQLNAPPVSYPG--GGPPVMRPPGQM 176
Query: 181 P 181
P
Sbjct: 177 P 177
>gi|224117856|ref|XP_002317685.1| predicted protein [Populus trichocarpa]
gi|222860750|gb|EEE98297.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 166/186 (89%), Positives = 174/186 (93%), Gaps = 9/186 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN
Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSA+AVAGPG+GRAAGRG+P
Sbjct: 61 --EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSAAAVAGPGLGRAAGRGIPT 118
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATS----GGPPVIRP 176
APLVQAQPGLAGPVRGVGGP+PGMMQPQ+SR PQLSAPPMTYPA S GG P++RP
Sbjct: 119 APLVQAQPGLAGPVRGVGGPSPGMMQPQLSR---PQLSAPPMTYPAGSGLPTGGAPILRP 175
Query: 177 PGQMPP 182
PGQMPP
Sbjct: 176 PGQMPP 181
>gi|51970288|dbj|BAD43836.1| unknown protein [Arabidopsis thaliana]
Length = 254
Score = 279 bits (714), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 178/240 (74%), Positives = 190/240 (79%), Gaps = 31/240 (12%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQFINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKK- 59
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
TNEERE+RRTLGLVLLRGEEVISMTVEGPPPPEESRAK+ S +AVAGPGIGRAAGRGVP
Sbjct: 60 TNEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPT 119
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQM 180
PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP+ +IRPPGQM
Sbjct: 120 GPLVQAQPGLSGPVRGIGGPAPGMMQPQISRPPL------------------IIRPPGQM 161
Query: 181 PPPV-YPGQGPPMARGPPPQGPPQGFGVRPPQQFPMPPQQFGQ-RPMVPPPPGPMMRGPP 238
PP + GQG PPP +G+RPP P PPQ GQ RPM+ PPPG MMRGPP
Sbjct: 162 PPQPPFAGQGGS----PPP------YGMRPPYPGPPPPQYGGQQRPMMIPPPGGMMRGPP 211
>gi|15241519|ref|NP_199263.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|79329893|ref|NP_001032011.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|9758703|dbj|BAB09157.1| unnamed protein product [Arabidopsis thaliana]
gi|14596137|gb|AAK68796.1| Unknown protein [Arabidopsis thaliana]
gi|18377438|gb|AAL66885.1| unknown protein [Arabidopsis thaliana]
gi|51971895|dbj|BAD44612.1| unknown protein [Arabidopsis thaliana]
gi|62320496|dbj|BAD95039.1| hypothetical protein [Arabidopsis thaliana]
gi|332007733|gb|AED95116.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|332007734|gb|AED95117.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
Length = 254
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 140/153 (91%), Positives = 146/153 (95%), Gaps = 1/153 (0%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQFINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNK-K 59
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
TNEERE+RRTLGLVLLRGEEVISMTVEGPPPPEESRAK+ S +AVAGPGIGRAAGRGVP
Sbjct: 60 TNEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPT 119
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 153
PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP
Sbjct: 120 GPLVQAQPGLSGPVRGIGGPAPGMMQPQISRPP 152
>gi|21536707|gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 277 bits (708), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 139/153 (90%), Positives = 146/153 (95%), Gaps = 1/153 (0%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQFINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNK-K 59
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
T+EERE+RRTLGLVLLRGEEVISMTVEGPPPPEESRAK+ S +AVAGPGIGRAAGRGVP
Sbjct: 60 TSEEREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPT 119
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 153
PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP
Sbjct: 120 GPLVQAQPGLSGPVRGIGGPAPGMMQPQISRPP 152
>gi|297794953|ref|XP_002865361.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
gi|297311196|gb|EFH41620.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 138/153 (90%), Positives = 145/153 (94%), Gaps = 1/153 (0%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQFINYRMRVTIQDGRQL+GKFMAFDRHMNLVLGDCEEFRKLPPAKG K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGSK-K 59
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
T E+RE+RRTLGLVLLRGEEVISMTVEGPPPPEESRAK+ S +AVAGPGIGRAAGRGVP
Sbjct: 60 TKEDREERRTLGLVLLRGEEVISMTVEGPPPPEESRAKSGSVTAVAGPGIGRAAGRGVPT 119
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 153
PLVQAQPGL+GPVRG+GGPAPGMMQPQISRPP
Sbjct: 120 GPLVQAQPGLSGPVRGIGGPAPGMMQPQISRPP 152
>gi|297799992|ref|XP_002867880.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
gi|297313716|gb|EFH44139.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 151/163 (92%), Positives = 154/163 (94%), Gaps = 4/163 (2%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-- 58
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKA SA+AVAGPGIGRAAGRGVP
Sbjct: 59 INEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPT 118
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMT 163
PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP PQLSAPP+
Sbjct: 119 GPLVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAPPII 159
>gi|15237095|ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|30685110|ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|79325195|ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|238480869|ref|NP_001154258.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|5262167|emb|CAB45810.1| putative snRNP protein [Arabidopsis thaliana]
gi|7268840|emb|CAB79044.1| putative snRNP protein [Arabidopsis thaliana]
gi|28393634|gb|AAO42236.1| putative snRNP protein [Arabidopsis thaliana]
gi|28827492|gb|AAO50590.1| putative snRNP protein [Arabidopsis thaliana]
gi|222423490|dbj|BAH19715.1| AT4G20440 [Arabidopsis thaliana]
gi|332658930|gb|AEE84330.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658931|gb|AEE84331.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658932|gb|AEE84332.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658933|gb|AEE84333.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
Length = 257
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 151/163 (92%), Positives = 154/163 (94%), Gaps = 4/163 (2%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-- 58
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKA SA+AVAGPGIGRAAGRGVP
Sbjct: 59 INEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPT 118
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMT 163
PLVQAQPGL+GPVRGVGGPAPGMMQPQISRP PQLSAPP+
Sbjct: 119 GPLVQAQPGLSGPVRGVGGPAPGMMQPQISRP--PQLSAPPII 159
>gi|326521412|dbj|BAJ96909.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 264
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/193 (74%), Positives = 159/193 (82%), Gaps = 9/193 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MS K SKMLQF+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP+K K
Sbjct: 1 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSK-- 58
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVS-ASAVAGPGIGRAAGRGVP 119
T ERE+RRTLGL+LLRGEEV+SMTVEGPPPP+ESRAKA + A++G G+GRAAGRGV
Sbjct: 59 TTGEREERRTLGLLLLRGEEVVSMTVEGPPPPDESRAKASAGGGALSGTGVGRAAGRGVA 118
Query: 120 AAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQ 179
PL+QAQPGL+GPVRGVGGPAPGMMQPQISRPP+P LSAPP+ YP V+RPP
Sbjct: 119 TGPLLQAQPGLSGPVRGVGGPAPGMMQPQISRPPMPNLSAPPVAYPQ------VVRPPPM 172
Query: 180 MPPPVYPGQGPPM 192
P + PG PPM
Sbjct: 173 GMPSMRPGGPPPM 185
>gi|242043028|ref|XP_002459385.1| hypothetical protein SORBIDRAFT_02g003850 [Sorghum bicolor]
gi|241922762|gb|EER95906.1| hypothetical protein SORBIDRAFT_02g003850 [Sorghum bicolor]
Length = 262
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 152/225 (67%), Positives = 168/225 (74%), Gaps = 30/225 (13%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MS K SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR+LPP+K K
Sbjct: 1 MSNPKGSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRRLPPSKSSK-- 58
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESR-AKAVSASAVAGPGIGRAAGRGVP 119
T +RE+RRTLGL+LLRGEEV+SMTVEGPPPP+ESR A + A+AGPG+GRAAGRGVP
Sbjct: 59 TTGDREERRTLGLLLLRGEEVVSMTVEGPPPPDESRAKAAAAGGALAGPGVGRAAGRGVP 118
Query: 120 AAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQ 179
PL+QA PGLAGPVRGVGGPAPGMMQPQISRPP+P LSA P++YP V+RPP
Sbjct: 119 TGPLLQAAPGLAGPVRGVGGPAPGMMQPQISRPPMPNLSAQPVSYPQ------VVRPPQG 172
Query: 180 MPPPVYPGQGPPM---------------------ARGPPPQGPPQ 203
MPPP+ PG P M RGP P GPPQ
Sbjct: 173 MPPPMRPGMQPQMPMPFRPPGVPPAPFPGAPQQFMRGPTPMGPPQ 217
>gi|297725409|ref|NP_001175068.1| Os07g0166600 [Oryza sativa Japonica Group]
gi|255677541|dbj|BAH93796.1| Os07g0166600 [Oryza sativa Japonica Group]
Length = 261
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 134/166 (80%), Positives = 148/166 (89%), Gaps = 3/166 (1%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MS K SKMLQF+NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP+K K
Sbjct: 1 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSK-- 58
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESR-AKAVSASAVAGPGIGRAAGRGVP 119
T ERE+RRTLGL+LLRGEEV+SMTVEGPPPP+ESR A + +A+AGPG+GRAAGRGVP
Sbjct: 59 TTGEREERRTLGLLLLRGEEVVSMTVEGPPPPDESRAKAAGAGAAMAGPGVGRAAGRGVP 118
Query: 120 AAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYP 165
A ++QAQPGLAGPVRGVGGPAPGMMQPQISRPP+P LSAPP+ YP
Sbjct: 119 AGQMLQAQPGLAGPVRGVGGPAPGMMQPQISRPPMPNLSAPPVAYP 164
>gi|414883666|tpg|DAA59680.1| TPA: small nuclear ribonucleoprotein-associated protein B [Zea
mays]
Length = 263
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 138/178 (77%), Positives = 151/178 (84%), Gaps = 9/178 (5%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MS K SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR+LPP+K K
Sbjct: 1 MSNPKGSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRRLPPSKSSK-- 58
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESR-AKAVSASAVAGPGIGRAAGRGVP 119
T ERE+RRTLGL+LLRGEEV+SMTVEGPPPP+ESR A + A+AGPGIGRAAGRGVP
Sbjct: 59 TTGEREERRTLGLLLLRGEEVVSMTVEGPPPPDESRAKAAAAGGALAGPGIGRAAGRGVP 118
Query: 120 AAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPP 177
PL+QA PGLAGPVRGVGGPAPGMMQPQISRPP+P LSA P++YP V+RPP
Sbjct: 119 TGPLLQAAPGLAGPVRGVGGPAPGMMQPQISRPPMPNLSAQPVSYPQ------VVRPP 170
>gi|226492272|ref|NP_001148524.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
gi|195620004|gb|ACG31832.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
Length = 263
Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 137/178 (76%), Positives = 149/178 (83%), Gaps = 9/178 (5%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MS K SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR+LPP+K K
Sbjct: 1 MSNPKGSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRRLPPSKSSK-- 58
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESR-AKAVSASAVAGPGIGRAAGRGVP 119
T ERE+RRTLGL+LLRGEEV+SMTVEGPPPP+ESR A + A AGPGIGRAAGRGVP
Sbjct: 59 TTGEREERRTLGLLLLRGEEVVSMTVEGPPPPDESRAKAAAAGGAXAGPGIGRAAGRGVP 118
Query: 120 AAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPP 177
PL+QA PGLAGPVRGVGGPAPGMMQPQI RPP+P LSA P++YP V+RPP
Sbjct: 119 TGPLLQAAPGLAGPVRGVGGPAPGMMQPQIXRPPMPNLSAQPVSYPQ------VVRPP 170
>gi|226496711|ref|NP_001140478.1| uncharacterized protein LOC100272538 [Zea mays]
gi|194699658|gb|ACF83913.1| unknown [Zea mays]
gi|195606200|gb|ACG24930.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
gi|414592013|tpg|DAA42584.1| TPA: Small nuclear ribonucleoprotein-associated protein B [Zea
mays]
Length = 263
Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 133/178 (74%), Positives = 145/178 (81%), Gaps = 9/178 (5%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MS K SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR+LPP+K K
Sbjct: 1 MSNPKGSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRRLPPSKSSK-- 58
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIG-RAAGRGVP 119
ERE+RRTLGL+LLRGEEV+SMTVEGPPPP+ESRAKA +A RAAGRGVP
Sbjct: 59 ATGEREERRTLGLLLLRGEEVVSMTVEGPPPPDESRAKAAAAGGALAGPGVGRAAGRGVP 118
Query: 120 AAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPP 177
PL+QA PGLAGPVRGVGGPAPGMMQPQISRPP+P LSA P++YP V+RPP
Sbjct: 119 TGPLLQAAPGLAGPVRGVGGPAPGMMQPQISRPPMPNLSAQPVSYPQ------VVRPP 170
>gi|384247810|gb|EIE21296.1| hypothetical protein COCSUDRAFT_83520 [Coccomyxa subellipsoidea
C-169]
Length = 270
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/175 (62%), Positives = 128/175 (73%), Gaps = 14/175 (8%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MS+SK+SK+L +INYRMRVT+ D R +VG+FMAFDRHMNLVLGD EEFRKLPP KG+
Sbjct: 1 MSVSKTSKLLNYINYRMRVTLIDSRHIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGR--- 57
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
T EER+ RR LGLVLLRG+EVIS+TVEGPPP + SR A A GPG+GRAAGRG+P
Sbjct: 58 TEEERDQRRVLGLVLLRGDEVISLTVEGPPPADASRLSKTQA-APGGPGMGRAAGRGMPT 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIR 175
A QA GL P RGVGGPAPGMM P+ PQ+SA P+ P G P +R
Sbjct: 117 AAPGQAPAGLGAPARGVGGPAPGMMLPR------PQVSAAPIIRP----GEPAVR 161
>gi|298714462|emb|CBJ27484.1| Small nuclear ribonucleoprotein-associated protein B [Ectocarpus
siliculosus]
Length = 217
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 96/147 (65%), Positives = 113/147 (76%), Gaps = 7/147 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-- 58
MSMS+SSKMLQ++NYRMR+TI DGR LVG MAFDRH+NLVLGDCEE+R+ P KG +
Sbjct: 1 MSMSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRRFKPKKGSEAA 60
Query: 59 NNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGV 118
+EERE++R LGLVLLRGE V S+TVEGPPP E++ KA GPG+GRAAGRGV
Sbjct: 61 AGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDT-GKATP----GGPGVGRAAGRGV 115
Query: 119 PAAPLVQAQPGLAGPVRGVGGPAPGMM 145
P P+ A GLAGPVRG+GGPA MM
Sbjct: 116 PTMPVQGAPRGLAGPVRGIGGPASSMM 142
>gi|255087740|ref|XP_002505793.1| predicted protein [Micromonas sp. RCC299]
gi|226521063|gb|ACO67051.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 99/155 (63%), Positives = 120/155 (77%), Gaps = 8/155 (5%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M ++++SKML +INYRMR+TI DGRQ+VG+FMAFDRHMNLVL D EEFRKLPP KK
Sbjct: 1 MVVNRTSKMLAYINYRMRITIVDGRQIVGRFMAFDRHMNLVLSDAEEFRKLPP---KKGL 57
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
T E+R RR LG +LLRGEEV+SMTVEGPPP E+ RA+A +A AGPG GRAAGRG+P
Sbjct: 58 TEEDRAVRRVLGFILLRGEEVVSMTVEGPPPQEDKRARAQAAP--AGPGSGRAAGRGMPG 115
Query: 121 APLVQA-QPGLAGPVRGVGGPAPGMMQPQISRPPI 154
+V A PGL GP+ G+GGP+ M+PQ S PP+
Sbjct: 116 --MVGAPAPGLMGPIAGLGGPSAASMRPQFSAPPV 148
>gi|168011312|ref|XP_001758347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690382|gb|EDQ76749.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 152
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 120/162 (74%), Positives = 137/162 (84%), Gaps = 10/162 (6%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSMSK+SK+L +IN+R+RVTIQDGRQLVGKFMAFDRHMNLVLGDCEE R++PP KGK
Sbjct: 1 MSMSKTSKLLLYINWRIRVTIQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGK--- 57
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
+ EE+E+RRTLGL+LLRGEEVISMTVEGPPPP+ESRAKA +A A GRAAGRG+P
Sbjct: 58 SQEEKEERRTLGLLLLRGEEVISMTVEGPPPPDESRAKAAAAVAGGPGV-GRAAGRGIPT 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPM 162
APL QAQPGLAGP RGVGGPAPGMMQP+ PQ+SA P+
Sbjct: 117 APLNQAQPGLAGPARGVGGPAPGMMQPR------PQVSAAPI 152
>gi|156350483|ref|XP_001622302.1| predicted protein [Nematostella vectensis]
gi|156208807|gb|EDO30202.1| predicted protein [Nematostella vectensis]
Length = 243
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/160 (58%), Positives = 123/160 (76%), Gaps = 7/160 (4%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ KSSKML INYRMR T+QDGR +G F+AFD+HMN++LGDC+EFRK+ KGK +
Sbjct: 3 TIGKSSKMLLHINYRMRCTLQDGRVFIGTFLAFDKHMNVILGDCDEFRKI---KGKSSKA 59
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA- 120
+ERE++R LGLVLLRGE ++SMTV+GPP ++ ++K++ A+AV G G+GRAAGRGVPA
Sbjct: 60 -QEREEKRVLGLVLLRGEHLVSMTVDGPPVADD-KSKSLGANAVPGTGMGRAAGRGVPAP 117
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSA 159
AP +QA PGL+GPVRGVGGPA +M PQ I S+
Sbjct: 118 IAPTIQAPPGLSGPVRGVGGPAQQLMTPQAQVNMIVCFSS 157
>gi|75057373|sp|Q9N1Q0.1|RSMB_MACEU RecName: Full=Small nuclear ribonucleoprotein-associated protein
B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm
protein B'; Short=Sm-B'; Short=SmB'
gi|7208221|gb|AAF40115.1|AF176323_1 small nuclear ribonucleoprotein B' [Macropus eugenii]
Length = 240
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ + A GPGIGRAAGRGVPA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLSGAAGGPGIGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|206694|gb|AAA42059.1| snRNP-associated polypeptide N [Rattus norvegicus]
Length = 240
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRFFIGTFKAFDKHMNLILCDCDEFRKIKP----KNA 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ ASA GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLASAAGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPIPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|348669540|gb|EGZ09362.1| hypothetical protein PHYSODRAFT_304932 [Phytophthora sojae]
Length = 217
Score = 180 bits (457), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 93/148 (62%), Positives = 112/148 (75%), Gaps = 9/148 (6%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK-KN 59
M M+KSSKML +INYRM+VT+QD R L+G FMAFD+HMNLVLGDCEEFR L K K K+
Sbjct: 1 MVMTKSSKMLNYINYRMKVTLQDSRVLIGYFMAFDKHMNLVLGDCEEFRTL---KAKVKS 57
Query: 60 NTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVP 119
+EER ++R LGLVLLRGE V+S+TVEGPP +E+ S GPG+ RAAGRG+P
Sbjct: 58 AVSEERVEKRHLGLVLLRGESVVSLTVEGPPLAKENETVGPS-----GPGVARAAGRGIP 112
Query: 120 AAPLVQAQPGLAGPVRGVGGPAPGMMQP 147
AAP+ GL P+RG+GGPAPGMMQP
Sbjct: 113 AAPVGAPPMGLMAPMRGIGGPAPGMMQP 140
>gi|301093096|ref|XP_002997397.1| small nuclear ribonucleoprotein-associated protein, putative
[Phytophthora infestans T30-4]
gi|262110795|gb|EEY68847.1| small nuclear ribonucleoprotein-associated protein, putative
[Phytophthora infestans T30-4]
Length = 216
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 112/148 (75%), Gaps = 9/148 (6%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK-KN 59
M M+KSSKML +INYRM+VT+QD R L+G FMAFD+HMNLVLGDCEEFR L K K K+
Sbjct: 1 MVMTKSSKMLNYINYRMKVTLQDSRVLIGYFMAFDKHMNLVLGDCEEFRTL---KAKVKS 57
Query: 60 NTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVP 119
+EER ++R LGLVLLRGE V+S+TVEGPP +E+ S GPG+ RAAGRG+P
Sbjct: 58 AVSEERVEKRHLGLVLLRGESVVSLTVEGPPLAKENETVGPS-----GPGVARAAGRGIP 112
Query: 120 AAPLVQAQPGLAGPVRGVGGPAPGMMQP 147
AAP+ GL P+RG+GGP+PGMMQP
Sbjct: 113 AAPIGAPPIGLMAPMRGIGGPSPGMMQP 140
>gi|303289090|ref|XP_003063833.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454901|gb|EEH52206.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 204
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 101/158 (63%), Positives = 115/158 (72%), Gaps = 17/158 (10%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M +S++SKML +INYRMRVTI DGRQ+VG+FMAFDRHMN+VLGD EEFRKLPP KK
Sbjct: 1 MVVSRTSKMLAYINYRMRVTIVDGRQIVGRFMAFDRHMNIVLGDAEEFRKLPP---KKGL 57
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRG--- 117
T EER+ RR LG +LLRGEEV+S+TVEGPPP E+ RA+A A G GIG+AAGRG
Sbjct: 58 TEEERQVRRVLGFLLLRGEEVVSLTVEGPPPQEDKRAQAQQAP--PGVGIGKAAGRGMPG 115
Query: 118 -----VPAAPLVQAQPGLAGPVRGVGGPAPGMMQPQIS 150
VP AP PGLAGPVRGVGG M PQ S
Sbjct: 116 VVPGTVPGAP----PPGLAGPVRGVGGAMGAHMMPQFS 149
>gi|109505083|ref|XP_001067879.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Rattus norvegicus]
gi|293342849|ref|XP_002725336.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Rattus norvegicus]
Length = 240
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 111/149 (74%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+H NL+L DC+EFRK+ P KN
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRFFIGTFKAFDKHRNLILCDCDEFRKIKP----KNA 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ ASA GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLASAAGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPIPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|118197470|gb|ABK78698.1| small nuclear ribonucleoprotein N [Macropus eugenii]
Length = 239
Score = 177 bits (448), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 110/148 (74%), Gaps = 5/148 (3%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 1 TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNAK 56
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA- 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRGVPA
Sbjct: 57 QPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGASGGPGIGRAAGRGVPAG 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 VPMPQAPSGLAGPVRGVGGPSQQVMTPQ 144
>gi|291239259|ref|XP_002739539.1| PREDICTED: small nuclear ribonucleoprotein polypeptide N-like
[Saccoglossus kowalevskii]
Length = 228
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 91/148 (61%), Positives = 110/148 (74%), Gaps = 5/148 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ IN+RMR+ IQDGR +G F+AFD+HMNL+LGDCEEFRK+ P KN
Sbjct: 1 MTVGKSSKMLQHINFRMRIAIQDGRIFIGTFLAFDKHMNLILGDCEEFRKIKP----KNT 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP E + A GPG+GRAAGRGVP
Sbjct: 57 KQPEREEKRVLGLVLLRGEHLVSMTVEGPPPAVEGLPRVPIPGAAPGPGMGRAAGRGVP- 115
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
AP A GL+GPVRG+GGP+ +M PQ
Sbjct: 116 APSSHAPAGLSGPVRGIGGPSQQIMTPQ 143
>gi|168061084|ref|XP_001782521.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168061116|ref|XP_001782537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066445|ref|XP_001785148.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663270|gb|EDQ50044.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666006|gb|EDQ52673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666022|gb|EDQ52689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 145
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/148 (79%), Positives = 131/148 (88%), Gaps = 4/148 (2%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MS+SK+SK+L +IN+RMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE R++PP KGK
Sbjct: 1 MSISKTSKLLLYINWRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEELRRVPPKKGK--- 57
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
T EERE+RRTLGL+LLRGEEVISMTVEGPPPP+ESRAKA +A+A GRAAGRG+P
Sbjct: 58 TQEEREERRTLGLLLLRGEEVISMTVEGPPPPDESRAKAAAAAAGGPGV-GRAAGRGIPT 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
APL QAQPGLAGP RGVGGPAPGMMQP+
Sbjct: 117 APLNQAQPGLAGPARGVGGPAPGMMQPR 144
>gi|325190755|emb|CCA25247.1| small nuclear ribonucleoproteinassociated protein pu [Albugo
laibachii Nc14]
Length = 218
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/146 (61%), Positives = 107/146 (73%), Gaps = 7/146 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M MSKSSKML +INYRM+VT+QD R LVG FMAFD+HMN+VLGDCEEFR L K N
Sbjct: 1 MVMSKSSKMLNYINYRMKVTLQDSRALVGYFMAFDKHMNIVLGDCEEFRTLKSK--LKTN 58
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
+EER ++R LGLVLLRGE V+S+TV+GPP E + GPGI RAAGRG+PA
Sbjct: 59 VSEERVEKRYLGLVLLRGESVVSLTVDGPPLAPEKETIGPN-----GPGIARAAGRGLPA 113
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQ 146
APL GL P+RG+GGPAPG++Q
Sbjct: 114 APLGAPPLGLVAPMRGIGGPAPGVLQ 139
>gi|302849879|ref|XP_002956468.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
gi|300258166|gb|EFJ42405.1| hypothetical protein VOLCADRAFT_107252 [Volvox carteri f.
nagariensis]
Length = 297
Score = 173 bits (439), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 102/159 (64%), Positives = 120/159 (75%), Gaps = 10/159 (6%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++S++SK+LQ+IN+RMRVT+ D RQ+VG+FMAFDRHMNLVLGD EEFR+LPP KGK
Sbjct: 1 MALSRTSKLLQYINFRMRVTLVDSRQIVGRFMAFDRHMNLVLGDSEEFRRLPPKKGKSEE 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
EER LGLVLLRGEE+IS+T+EGPPP EE R S A GPG+ RA GRG+PA
Sbjct: 61 EREERR---VLGLVLLRGEEIISLTIEGPPPNEEMRTDR-SQVAPGGPGVARAVGRGMPA 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSA 159
A QA GLAGP RGVGGPAPGMM P+ PQ+SA
Sbjct: 117 AAPGQAPAGLAGPARGVGGPAPGMMMPR------PQVSA 149
>gi|443734551|gb|ELU18483.1| hypothetical protein CAPTEDRAFT_165566 [Capitella teleta]
Length = 183
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 89/147 (60%), Positives = 111/147 (75%), Gaps = 6/147 (4%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ +SSKMLQ IN+RMR T+ DGR +G F+AFD+HMNL+LGDC+EFR++ P KGK
Sbjct: 3 NVGRSSKMLQHINFRMRCTLLDGRTFIGTFLAFDKHMNLILGDCDEFRRVKP-KGK---- 57
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAA 121
++E++R LGLVLLRGE ++SMTVEGPPP EE A+ A GPG+GRAAGRGVP
Sbjct: 58 GADKEEKRVLGLVLLRGENLVSMTVEGPPPAEEGIARVPIPGATGGPGMGRAAGRGVPMG 117
Query: 122 PL-VQAQPGLAGPVRGVGGPAPGMMQP 147
+ + A PGLAGPVRGVGGPA MQP
Sbjct: 118 GVPMGAAPGLAGPVRGVGGPAQSHMQP 144
>gi|391329361|ref|XP_003739143.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Metaseiulus occidentalis]
Length = 209
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/163 (57%), Positives = 117/163 (71%), Gaps = 11/163 (6%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++SK++KMLQ INYRMRVT+QD R +G F AFD+HMNL+L +CEEFRK+ +G
Sbjct: 1 MTISKNNKMLQHINYRMRVTLQDSRSFIGTFKAFDKHMNLILTECEEFRKIKAKQG---- 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
+ERE++R LGLVLLRGE ++SMTVEGPPPPEE+ V + + G+GRAAGRG+PA
Sbjct: 57 -GQEREEKRVLGLVLLRGENIVSMTVEGPPPPEETGLPRVPGA--SSQGMGRAAGRGMPA 113
Query: 121 APLVQAQP-GLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPM 162
PL + P GL GPVRGVGGP+ M PQ I SAPPM
Sbjct: 114 GPLGTSAPAGLQGPVRGVGGPSTPQMTPQARGASI---SAPPM 153
>gi|196004222|ref|XP_002111978.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190585877|gb|EDV25945.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 247
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 109/151 (72%), Gaps = 7/151 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M +SK SKM INYRMR T+QD R +G +A+D+HMN+VLGDC+EFRK+ K++
Sbjct: 1 MPVSKKSKMAMHINYRMRATLQDTRMFIGTLLAYDKHMNIVLGDCDEFRKIK----SKSS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEES---RAKAVSASAVAGPGIGRAAGRG 117
N+ERE++R+LGLV+LRGE ++S+TVEGPPP E S RA+ SA GPGIGRAAGRG
Sbjct: 57 KNQEREEKRSLGLVILRGENLVSLTVEGPPPAEVSLLERARVPGFSATPGPGIGRAAGRG 116
Query: 118 VPAAPLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
VP A Q GL+GP +GVGGP +M PQ
Sbjct: 117 VPIAISSVYQTGLSGPAKGVGGPGQQVMTPQ 147
>gi|321466061|gb|EFX77059.1| hypothetical protein DAPPUDRAFT_305959 [Daphnia pulex]
Length = 234
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/165 (57%), Positives = 115/165 (69%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++SK++KM+Q +NYR+RVT+QD R +G F AFD+HMNL+LGDCEEFRK+ K
Sbjct: 1 MTISKNNKMVQHLNYRVRVTLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKAKINKSGV 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP EES + V GPG+GRAAGRGVP
Sbjct: 61 GATEREEKRVLGLVLLRGENIVSMTVEGPPPTEESMPRVPMPGVVPGPGVGRAAGRGVPV 120
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYP 165
+ A GL GPVRGVGGPAP MM P P +SAPP P
Sbjct: 121 NAPMGAPAGLQGPVRGVGGPAPQMMVPGGRGAGGPAVSAPPQMRP 165
>gi|384483289|gb|EIE75469.1| hypothetical protein RO3G_00173 [Rhizopus delemar RA 99-880]
Length = 202
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/150 (58%), Positives = 110/150 (73%), Gaps = 4/150 (2%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M+ + SSKM +NYR+RVT+ D R L G+ +AFD+HMNLVL DCEEFRK+ +K K NN
Sbjct: 1 MTKTSSSKMANLVNYRLRVTMSDSRVLTGQMLAFDKHMNLVLADCEEFRKVK-SKAKSNN 59
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGV-- 118
E+ E +RTLGLV+LRGE +IS++++GPPPP A+A AS +AG GIGR GRG+
Sbjct: 60 PTEQ-EMKRTLGLVILRGETIISISIDGPPPPSIDDARARGASLLAGTGIGRPMGRGMPA 118
Query: 119 PAAPLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
PL GLAGPVRGVGGPAPGMMQP+
Sbjct: 119 APPPLGGPMTGLAGPVRGVGGPAPGMMQPR 148
>gi|405960791|gb|EKC26669.1| Small nuclear ribonucleoprotein-associated protein B' [Crassostrea
gigas]
Length = 145
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 104/147 (70%), Gaps = 5/147 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ +SSKMLQ INYRMR +QDGR +G F AFD+HMNL+LGDC+EFRK+ P K++
Sbjct: 1 MTVGRSSKMLQHINYRMRCALQDGRTFIGTFKAFDKHMNLILGDCDEFRKIKP----KSS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP EE A+ A A G G+GRAAGRG+
Sbjct: 57 KQGEREEKRVLGLVLLRGEHLVSMTVEGPPPAEEGVARVPLAGAAPGQGMGRAAGRGISG 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQP 147
L GP RGVGGP+P MM P
Sbjct: 117 PGASGGPG-LQGPARGVGGPSPQMMAP 142
>gi|50540540|ref|NP_991230.1| small nuclear ribonucleoprotein polypeptides B and B1 [Danio rerio]
gi|8099650|gb|AAF72188.1| snRNP-associated protein [Danio rerio]
gi|41351028|gb|AAH65601.1| Small nuclear ribonucleoprotein polypeptides B and B1 [Danio rerio]
Length = 239
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGVAGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
AP+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GAPMAQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|440586625|emb|CCK33034.1| RNA-binding protein SmB [Platynereis dumerilii]
Length = 204
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 107/147 (72%), Gaps = 6/147 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ INYRMR T+QDGR +G F AFD+HMNL+LGDC+EFRK+ P K K+
Sbjct: 1 MTVGKSSKMLQHINYRMRCTLQDGRIFIGTFKAFDKHMNLILGDCDEFRKIKPKKAKEER 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
+ LGLVLLRGE ++SMTVEGPPP +E A+ V AGPG+GRAAGRGVP+
Sbjct: 61 EEKR-----VLGLVLLRGENLVSMTVEGPPPADEGMAR-VPLPGSAGPGMGRAAGRGVPS 114
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQP 147
A PGL GPVRGVGGP+ MMQP
Sbjct: 115 GGAAGAMPGLQGPVRGVGGPSSQMMQP 141
>gi|405957470|gb|EKC23678.1| Small nuclear ribonucleoprotein-associated protein B' [Crassostrea
gigas]
Length = 175
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 84/145 (57%), Positives = 103/145 (71%), Gaps = 5/145 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ +SSKMLQ INYRMR +QDGR +G F AFD+HMNL+LGDC+EFRK+ P K++
Sbjct: 1 MTVGRSSKMLQHINYRMRCALQDGRTFIGTFKAFDKHMNLILGDCDEFRKIKP----KSS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP EE A+ A A G G+GRAAGRG+
Sbjct: 57 KQGEREEKRVLGLVLLRGEHLVSMTVEGPPPAEEGVARVPLAGAAPGQGMGRAAGRGISG 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMM 145
L GP RGVGGP+P MM
Sbjct: 117 PGASGGPG-LQGPARGVGGPSPQMM 140
>gi|384492952|gb|EIE83443.1| hypothetical protein RO3G_08148 [Rhizopus delemar RA 99-880]
Length = 174
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 107/150 (71%), Gaps = 4/150 (2%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M+ + SSKM +NYR+RVT+ D R L G+ +AFD+HMNLVL DCEEFRK+ +K K NN
Sbjct: 1 MTKTSSSKMANLVNYRLRVTMSDSRVLTGQMLAFDKHMNLVLADCEEFRKV-KSKAKSNN 59
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGV-- 118
T E+ E +RTLGL++LRGE +IS++V+GPPPP + +AG GIGR GRG+
Sbjct: 60 TTEQ-EMKRTLGLIILRGETIISISVDGPPPPSMDDVRTRGTGMLAGTGIGRPMGRGMPA 118
Query: 119 PAAPLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
PL GLAGP+RG+GGPAPGMMQP+
Sbjct: 119 APPPLGGPMAGLAGPIRGIGGPAPGMMQPR 148
>gi|351715057|gb|EHB17976.1| Small nuclear ribonucleoprotein-associated protein N
[Heterocephalus glaber]
Length = 237
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/149 (59%), Positives = 106/149 (71%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ +YRMR +QDGR +G F AFD+HMNL+L DC EFRK+ P KN
Sbjct: 1 MTVGKSSKMLQHNDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKP----KNP 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLL GE ++SM VEGPPP + A+ A A GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLCGENLVSMPVEGPPPKDTGIARVPLAGATGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP +M PQ
Sbjct: 117 GVPIPQAPAGLAGPVRGVGGPFQQIMTPQ 145
>gi|302755206|ref|XP_002961027.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
gi|302767128|ref|XP_002966984.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300164975|gb|EFJ31583.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300171966|gb|EFJ38566.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
Length = 94
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 78/94 (82%), Positives = 83/94 (88%), Gaps = 1/94 (1%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK-KN 59
MS+SKSSKML +INYRMRVTIQDGRQLVGKFMAFDRHMN VLGD EEFR+LPP KG K
Sbjct: 1 MSLSKSSKMLNYINYRMRVTIQDGRQLVGKFMAFDRHMNFVLGDTEEFRRLPPKKGAGKQ 60
Query: 60 NTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
EEREDRRTLGL+LLRGEEV+SMTVEGPPP E
Sbjct: 61 QGGEEREDRRTLGLILLRGEEVVSMTVEGPPPQE 94
>gi|326428499|gb|EGD74069.1| hypothetical protein PTSG_12357 [Salpingoeca sp. ATCC 50818]
Length = 212
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/147 (58%), Positives = 105/147 (71%), Gaps = 11/147 (7%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
KS+K+L+++NYRMRVT +DGR LVG FMA+D+HMN+VL DCEEFR + KG +E
Sbjct: 5 KSNKILKYMNYRMRVTTEDGRMLVGTFMAYDKHMNMVLSDCEEFRTVKAKKG-----TDE 59
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLV 124
+ +R LG +LLRGE V+SM VEGPPP EE R V+A GPG+GRAAGRG+ +
Sbjct: 60 QTQKRALGFILLRGENVVSMAVEGPPPQEEKRTVKVAAP---GPGVGRAAGRGI--VTQI 114
Query: 125 QAQP-GLAGPVRGVGGPAPGMMQPQIS 150
A P GLAGP RGVGGPAP M PQ S
Sbjct: 115 NAPPVGLAGPARGVGGPAPSNMMPQQS 141
>gi|432858790|ref|XP_004068940.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Oryzias latipes]
Length = 240
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I++RMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGVAGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
AP+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GAPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|410932467|ref|XP_003979615.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like, partial [Takifugu rubripes]
Length = 225
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I++RMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGVAGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
AP+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GAPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|213512296|ref|NP_001134522.1| Small nuclear ribonucleoprotein-associated protein B [Salmo salar]
gi|209734002|gb|ACI67870.1| Small nuclear ribonucleoprotein-associated protein B [Salmo salar]
gi|223647212|gb|ACN10364.1| Small nuclear ribonucleoprotein-associated protein B [Salmo salar]
gi|223673087|gb|ACN12725.1| Small nuclear ribonucleoprotein-associated protein B [Salmo salar]
Length = 237
Score = 163 bits (412), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I++RMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGVAGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
AP+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GAPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|300176167|emb|CBK23478.2| unnamed protein product [Blastocystis hominis]
Length = 234
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 108/162 (66%), Gaps = 9/162 (5%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK--NNTNEERE 66
ML ++NYRMRV I++ R LVG MAFD+HMNL+LGDCEEFRK+ G N EERE
Sbjct: 1 MLNYVNYRMRVVIRENRVLVGTLMAFDKHMNLILGDCEEFRKIRSKSGVAVVNGVIEERE 60
Query: 67 DRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQA 126
++ TLGLVLLRGE ++S+ +EGPPP + + A AGPG R AGRG+PAAPL A
Sbjct: 61 EKNTLGLVLLRGENIVSLQIEGPPPQDLP-----TQIAAAGPGTVRVAGRGMPAAPLTAA 115
Query: 127 QPGLAGPVRGVGGPAPGMMQPQI--SRPPIPQLSAPPMTYPA 166
GLAGPVRG+GGP+ +M Q+ S P A PM PA
Sbjct: 116 PQGLAGPVRGLGGPSASIMSGQVIASAPATNARPAMPMGVPA 157
>gi|260819010|ref|XP_002604675.1| hypothetical protein BRAFLDRAFT_94837 [Branchiostoma floridae]
gi|229290003|gb|EEN60686.1| hypothetical protein BRAFLDRAFT_94837 [Branchiostoma floridae]
Length = 219
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/164 (56%), Positives = 112/164 (68%), Gaps = 8/164 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M + KSSKM +NYRMRVT+QD R +G F AFD+HMNL+L DC+EFRK+ P K+
Sbjct: 1 MVVGKSSKMQAHLNYRMRVTLQDSRVFIGTFKAFDKHMNLILVDCDEFRKIRP----KSQ 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
EERE++R LGLVLLRGE ++SMTVEGPPP +E A+ A GPG+GRAAGRGV
Sbjct: 57 KQEEREEKRVLGLVLLRGENIVSMTVEGPPPADEGVARVPIPGAGPGPGMGRAAGRGVAN 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTY 164
A GLAGPVRGVGGP+ +M PQ R + SAPP Y
Sbjct: 117 VAGPSAPAGLAGPVRGVGGPSQQVMTPQ-GRAAV---SAPPQQY 156
>gi|348540539|ref|XP_003457745.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Oreochromis niloticus]
Length = 256
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 90/148 (60%), Positives = 111/148 (75%), Gaps = 5/148 (3%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ KSSKMLQ I++RMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 18 TVGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSK 73
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA- 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A GPG+GRAAGRGVPA
Sbjct: 74 QPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGVAGGPGVGRAAGRGVPAG 133
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
AP+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 134 APMPQAPAGLAGPVRGVGGPSQQVMTPQ 161
>gi|281200299|gb|EFA74520.1| putative small nuclear ribonucleoparticle-associated protein
[Polysphondylium pallidum PN500]
Length = 250
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/154 (57%), Positives = 109/154 (70%), Gaps = 14/154 (9%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MSM KSSKMLQFIN+R+RVTIQDGR +VG+F+AFD+HMN+V+ D EEFR++ K
Sbjct: 1 MSMPKSSKMLQFINWRIRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRI------KQK 54
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
E+RE++RTLG+VL+RGE V+S++ E PPPEE +AK V+ GPGIGRA GRG+
Sbjct: 55 GKEDREEKRTLGMVLIRGETVVSLSAE-SPPPEEVKAK-VAPQVPGGPGIGRAVGRGMMM 112
Query: 121 APLVQAQP------GLAGPVRGVGGPAPGMMQPQ 148
A P GL GPVRGVG APG M PQ
Sbjct: 113 TSGGGAPPGANNPVGLTGPVRGVGSAAPGSMMPQ 146
>gi|340375810|ref|XP_003386427.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Amphimedon queenslandica]
Length = 223
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 83/139 (59%), Positives = 103/139 (74%), Gaps = 6/139 (4%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
+ KSSK+LQ +++R+RVT+ DGR VG FMAFD+H+NLVL DCEEFRK+ P KN
Sbjct: 2 LGKSSKLLQHMHHRIRVTLLDGRMFVGTFMAFDQHLNLVLADCEEFRKIRP----KNQKL 57
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASA-VAGPGIGRAAGRGVPAA 121
ERE++RTLGLVLLRG ++S+T+EGPPP + +A A AGPG+GRAAGRG+P A
Sbjct: 58 PEREEKRTLGLVLLRGMNLVSLTIEGPPPSRDRFKQAHPQQAPQAGPGMGRAAGRGLPMA 117
Query: 122 PLVQAQP-GLAGPVRGVGG 139
P A P GL GPVRGVGG
Sbjct: 118 PTAVAAPAGLTGPVRGVGG 136
>gi|294885961|ref|XP_002771488.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239875192|gb|EER03304.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 171
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/141 (58%), Positives = 106/141 (75%), Gaps = 7/141 (4%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ +++KM Q++NYR+RVT+ DGR ++G+FMAFD+HMNLVL D EEFRK+ +KG ++
Sbjct: 3 AVGRNTKMQQWLNYRVRVTLHDGRIMIGQFMAFDKHMNLVLADTEEFRKV-RSKG-ESGL 60
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAA 121
EERE +R LGL++LRGE +ISMT E PPP + S +AGPG G AAGRGVP A
Sbjct: 61 GEEREVKRMLGLLILRGENIISMTAEAPPPNVKK-----SEGPLAGPGRGHAAGRGVPIA 115
Query: 122 PLVQAQPGLAGPVRGVGGPAP 142
PL QA GL GP+RGVGGPAP
Sbjct: 116 PLGQAPQGLTGPIRGVGGPAP 136
>gi|294872496|ref|XP_002766300.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239867057|gb|EEQ99017.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 172
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/141 (58%), Positives = 106/141 (75%), Gaps = 7/141 (4%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ +++KM Q++NYR+RVT+ DGR ++G+FMAFD+HMNLVL D EEFRK+ +KG ++
Sbjct: 3 AVGRNTKMQQWLNYRVRVTLHDGRIMIGQFMAFDKHMNLVLADTEEFRKV-RSKG-ESGL 60
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAA 121
EERE +R LGL++LRGE +ISMT E PPP + S +AGPG G AAGRGVP A
Sbjct: 61 GEEREVKRMLGLLILRGENIISMTAEAPPPNVKK-----SEGPMAGPGRGHAAGRGVPIA 115
Query: 122 PLVQAQPGLAGPVRGVGGPAP 142
PL QA GL GP+RGVGGPAP
Sbjct: 116 PLGQAPQGLTGPIRGVGGPAP 136
>gi|294901095|ref|XP_002777232.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239884763|gb|EER09048.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 171
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 82/141 (58%), Positives = 106/141 (75%), Gaps = 7/141 (4%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ +++KM Q++NYR+RVT+ DGR ++G+FMAFD+HMNLVL D EEFRK+ +KG ++
Sbjct: 3 AVGRNTKMQQWLNYRVRVTLHDGRIMIGQFMAFDKHMNLVLADTEEFRKV-RSKG-ESGL 60
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAA 121
EERE +R LGL++LRGE +ISMT E PPP + S +AGPG G AAGRGVP A
Sbjct: 61 GEEREVKRMLGLLILRGENIISMTAEAPPPNVKK-----SEGPLAGPGRGHAAGRGVPIA 115
Query: 122 PLVQAQPGLAGPVRGVGGPAP 142
PL QA GL GP+RGVGGPAP
Sbjct: 116 PLGQAPQGLTGPIRGVGGPAP 136
>gi|86438323|gb|AAI12635.1| SNRPB protein [Bos taurus]
Length = 239
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|45382973|ref|NP_989930.1| small nuclear ribonucleoprotein-associated protein B' [Gallus
gallus]
gi|10720263|sp|Q9PV94.1|RSMB_CHICK RecName: Full=Small nuclear ribonucleoprotein-associated protein
B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm
protein B'; Short=Sm-B'; Short=SmB'
gi|5870119|gb|AAD54485.1|AF134830_1 small nuclear ribonucleoprotein B' [Gallus gallus]
Length = 240
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 113/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
AP+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GAPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|427782609|gb|JAA56756.1| Putative small nuclear ribonucleoprotein-associated protein b and
b' [Rhipicephalus pulchellus]
Length = 239
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/171 (57%), Positives = 121/171 (70%), Gaps = 9/171 (5%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++SK++KMLQ INYRMRV +QD R +G F AFD+HMNL+LGDCEEFRK+ KGK
Sbjct: 1 MTISKNNKMLQHINYRMRVILQDSRIFIGTFKAFDKHMNLILGDCEEFRKV---KGKSQA 57
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
+ +RE++R LGLVLLRGE ++S+TVEGPPPPEE + A GPGIGRAAGRG+PA
Sbjct: 58 RHGDREEKRVLGLVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRAAGRGIPA 117
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQ------LSAPPMTYP 165
AP+ A GL GPVRGVGGP+ +M PQ R P +SAPP P
Sbjct: 118 APVGAAPAGLQGPVRGVGGPSAQVMAPQAGRGGTPLPPGAVGVSAPPQVRP 168
>gi|119631003|gb|EAX10598.1| small nuclear ribonucleoprotein polypeptides B and B1, isoform
CRA_c [Homo sapiens]
gi|194375339|dbj|BAG62782.1| unnamed protein product [Homo sapiens]
Length = 234
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|395506057|ref|XP_003757352.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Sarcophilus harrisii]
Length = 240
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRGVPA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|190247|gb|AAA60151.1| snRNP polypeptide B [Homo sapiens]
Length = 285
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|432111113|gb|ELK34499.1| Small nuclear ribonucleoprotein-associated protein B' [Myotis
davidii]
Length = 240
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|417397681|gb|JAA45874.1| Putative u1 snrnp component [Desmodus rotundus]
Length = 240
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|380791233|gb|AFE67492.1| small nuclear ribonucleoprotein-associated protein N, partial
[Macaca mulatta]
Length = 228
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|12643865|sp|Q9TU67.1|RSMB_ERIEU RecName: Full=Small nuclear ribonucleoprotein-associated protein
B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm
protein B'; Short=Sm-B'; Short=SmB'
gi|5870111|gb|AAD54481.1|AF134826_1 small nuclear ribonucleoprotein B' [Erinaceus europaeus]
Length = 240
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|38150007|ref|NP_937859.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B' [Homo sapiens]
gi|73991487|ref|XP_861671.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 4 [Canis lupus familiaris]
gi|114680541|ref|XP_525398.2| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Pan troglodytes]
gi|149733145|ref|XP_001497533.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B'-like isoform 2 [Equus caballus]
gi|297706683|ref|XP_002830161.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Pongo abelii]
gi|332248649|ref|XP_003273477.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Nomascus leucogenys]
gi|348581828|ref|XP_003476679.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B'-like [Cavia porcellus]
gi|395829987|ref|XP_003788118.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Otolemur garnettii]
gi|397501309|ref|XP_003821332.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Pan paniscus]
gi|402883007|ref|XP_003905022.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Papio anubis]
gi|403300779|ref|XP_003941094.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Saimiri boliviensis boliviensis]
gi|410954251|ref|XP_003983779.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Felis catus]
gi|426390714|ref|XP_004061744.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Gorilla gorilla gorilla]
gi|426390722|ref|XP_004061748.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 6 [Gorilla gorilla gorilla]
gi|441639076|ref|XP_004090181.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Nomascus leucogenys]
gi|134037|sp|P14678.2|RSMB_HUMAN RecName: Full=Small nuclear ribonucleoprotein-associated proteins B
and B'; Short=snRNP-B; AltName: Full=Sm protein B/B';
Short=Sm-B/B'; Short=SmB/B'
gi|6018504|emb|CAB57868.1| snRNP B' protein [Homo sapiens]
gi|48146055|emb|CAG33250.1| SNRPB [Homo sapiens]
gi|119631001|gb|EAX10596.1| small nuclear ribonucleoprotein polypeptides B and B1, isoform
CRA_a [Homo sapiens]
gi|383408773|gb|AFH27600.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B' [Macaca mulatta]
gi|410215074|gb|JAA04756.1| small nuclear ribonucleoprotein polypeptide N [Pan troglodytes]
gi|410265024|gb|JAA20478.1| small nuclear ribonucleoprotein polypeptides B and B1 [Pan
troglodytes]
gi|410303130|gb|JAA30165.1| small nuclear ribonucleoprotein polypeptides B and B1 [Pan
troglodytes]
Length = 240
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|147901727|ref|NP_001089822.1| small nuclear ribonucleoprotein polypeptides B and B1 [Xenopus
laevis]
gi|83318209|gb|AAI08498.1| MGC130840 protein [Xenopus laevis]
Length = 234
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 114/149 (76%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I++RMR T+QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDFRMRCTLQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
AP+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GAPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|6678053|ref|NP_033251.1| small nuclear ribonucleoprotein-associated protein B [Mus musculus]
gi|134038|sp|P27048.1|RSMB_MOUSE RecName: Full=Small nuclear ribonucleoprotein-associated protein B;
Short=snRNP-B; Short=snRPB; AltName: Full=Sm protein B;
Short=Sm-B; Short=SmB
gi|200992|gb|AAA40119.1| Sm-B protein [Mus musculus]
gi|74226859|dbj|BAE27074.1| unnamed protein product [Mus musculus]
gi|146327314|gb|AAI41605.1| Small nuclear ribonucleoprotein B [synthetic construct]
gi|147898161|gb|AAI40305.1| Small nuclear ribonucleoprotein B [synthetic construct]
gi|148696304|gb|EDL28251.1| mCG9909 [Mus musculus]
Length = 231
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|47575712|ref|NP_001001198.1| small nuclear ribonucleoprotein polypeptides B and B1 [Xenopus
(Silurana) tropicalis]
gi|45501101|gb|AAH67325.1| SNRPN upstream reading frame [Xenopus (Silurana) tropicalis]
gi|49898984|gb|AAH76700.1| SNRPN upstream reading frame [Xenopus (Silurana) tropicalis]
Length = 237
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 113/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
AP+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GAPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|4507125|ref|NP_003082.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B [Homo sapiens]
gi|189339196|ref|NP_599185.1| small nuclear ribonucleoprotein-associated protein B [Rattus
norvegicus]
gi|383872951|ref|NP_001244645.1| small nuclear ribonucleoprotein polypeptides B and B1 [Macaca
mulatta]
gi|73991485|ref|XP_542930.2| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Canis lupus familiaris]
gi|114680543|ref|XP_001156133.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Pan troglodytes]
gi|149733143|ref|XP_001497520.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B'-like isoform 1 [Equus caballus]
gi|297706685|ref|XP_002830162.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Pongo abelii]
gi|301766854|ref|XP_002918830.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Ailuropoda melanoleuca]
gi|332248647|ref|XP_003273476.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Nomascus leucogenys]
gi|332248651|ref|XP_003273478.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Nomascus leucogenys]
gi|332857915|ref|XP_003316862.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Pan troglodytes]
gi|395752104|ref|XP_003779360.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Pongo abelii]
gi|395752106|ref|XP_003779361.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Pongo abelii]
gi|395752108|ref|XP_003779362.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Pongo abelii]
gi|395829985|ref|XP_003788117.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Otolemur garnettii]
gi|397501307|ref|XP_003821331.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Pan paniscus]
gi|397501311|ref|XP_003821333.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Pan paniscus]
gi|397501313|ref|XP_003821334.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 4 [Pan paniscus]
gi|402883005|ref|XP_003905021.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Papio anubis]
gi|402883009|ref|XP_003905023.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Papio anubis]
gi|403300777|ref|XP_003941093.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Saimiri boliviensis boliviensis]
gi|403300781|ref|XP_003941095.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Saimiri boliviensis boliviensis]
gi|410954253|ref|XP_003983780.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Felis catus]
gi|426390712|ref|XP_004061743.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Gorilla gorilla gorilla]
gi|426390716|ref|XP_004061745.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Gorilla gorilla gorilla]
gi|426390718|ref|XP_004061746.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 4 [Gorilla gorilla gorilla]
gi|426390720|ref|XP_004061747.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 5 [Gorilla gorilla gorilla]
gi|441639072|ref|XP_004090180.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Nomascus leucogenys]
gi|315583601|pdb|3PGW|B Chain B, Crystal Structure Of Human U1 Snrnp
gi|315583610|pdb|3PGW|Q Chain Q, Crystal Structure Of Human U1 Snrnp
gi|29410|emb|CAA33902.1| unnamed protein product [Homo sapiens]
gi|6018503|emb|CAB57867.1| snRNP B protein [Homo sapiens]
gi|51593415|gb|AAH80516.1| Small nuclear ribonucleoprotein polypeptides B and B1 [Homo
sapiens]
gi|119631002|gb|EAX10597.1| small nuclear ribonucleoprotein polypeptides B and B1, isoform
CRA_b [Homo sapiens]
gi|149023280|gb|EDL80174.1| rCG26118, isoform CRA_a [Rattus norvegicus]
gi|165971421|gb|AAI58687.1| Snrpb protein [Rattus norvegicus]
gi|189069168|dbj|BAG35506.1| unnamed protein product [Homo sapiens]
gi|208967442|dbj|BAG73735.1| small nuclear ribonucleoprotein polypeptides B and B1 [synthetic
construct]
gi|312151034|gb|ADQ32029.1| small nuclear ribonucleoprotein polypeptides B and B1 [synthetic
construct]
gi|380785189|gb|AFE64470.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B [Macaca mulatta]
gi|383420993|gb|AFH33710.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B' [Macaca mulatta]
gi|410215070|gb|JAA04754.1| small nuclear ribonucleoprotein polypeptides B and B1 [Pan
troglodytes]
gi|410265026|gb|JAA20479.1| small nuclear ribonucleoprotein polypeptides B and B1 [Pan
troglodytes]
gi|410303132|gb|JAA30166.1| small nuclear ribonucleoprotein polypeptides B and B1 [Pan
troglodytes]
Length = 231
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|291396337|ref|XP_002714532.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B/B' isoform
2 [Oryctolagus cuniculus]
Length = 240
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 108/149 (72%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR + F FD+H+NL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIATFKVFDKHVNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
+RE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGR AGRG+PA
Sbjct: 57 KQAKREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRDAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPTQQVMTPQ 145
>gi|77736407|ref|NP_001029903.1| small nuclear ribonucleoprotein-associated protein B' [Bos taurus]
gi|426241116|ref|XP_004014438.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
isoform 1 [Ovis aries]
gi|75056662|sp|Q58DW4.1|RSMB_BOVIN RecName: Full=Small nuclear ribonucleoprotein-associated protein
B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm
protein B'; Short=Sm-B'; Short=SmB'
gi|61552980|gb|AAX46330.1| small nuclear ribonucleoprotein polypeptide B/B' isoform B' [Bos
taurus]
gi|296481179|tpg|DAA23294.1| TPA: small nuclear ribonucleoprotein-associated protein B' [Bos
taurus]
Length = 240
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|426241118|ref|XP_004014439.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
isoform 2 [Ovis aries]
Length = 231
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|291388823|ref|XP_002710954.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B/B-like
[Oryctolagus cuniculus]
Length = 196
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|431894230|gb|ELK04030.1| Small nuclear ribonucleoprotein-associated proteins B and B'
[Pteropus alecto]
Length = 356
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/148 (61%), Positives = 111/148 (75%), Gaps = 5/148 (3%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 118 TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSK 173
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA- 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 174 QAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAG 233
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 234 VPMPQAPAGLAGPVRGVGGPSQQVMTPQ 261
>gi|53690154|gb|AAU89981.1| small nuclear ribonucleoprotein polypeptide B [Homo sapiens]
Length = 231
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 EQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|291396335|ref|XP_002714531.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B/B' isoform
1 [Oryctolagus cuniculus]
Length = 231
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 108/149 (72%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR + F FD+H+NL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIATFKVFDKHVNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
+RE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGR AGRG+PA
Sbjct: 57 KQAKREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRDAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPTQQVMTPQ 145
>gi|225734041|pdb|3CW1|A Chain A, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734050|pdb|3CW1|H Chain H, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734059|pdb|3CW1|I Chain I, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734068|pdb|3CW1|J Chain J, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 174
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|354473769|ref|XP_003499105.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Cricetulus griseus]
Length = 339
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/148 (61%), Positives = 111/148 (75%), Gaps = 5/148 (3%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 110 TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSK 165
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA- 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 166 QAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAG 225
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 226 VPMPQAPAGLAGPVRGVGGPSQQVMTPQ 253
>gi|350536589|ref|NP_001232486.1| small nuclear ribonucleoprotein-associated protein N [Taeniopygia
guttata]
gi|197129675|gb|ACH46173.1| putative small nuclear ribonucleoprotein polypeptide B variant 1
[Taeniopygia guttata]
Length = 240
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GTPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|334311663|ref|XP_001374371.2| PREDICTED: hypothetical protein LOC100022567 [Monodelphis
domestica]
Length = 465
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 111/149 (74%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 226 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNA 281
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRGVPA
Sbjct: 282 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGVPA 341
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 342 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 370
>gi|327288953|ref|XP_003229189.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Anolis carolinensis]
Length = 318
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 112/148 (75%), Gaps = 5/148 (3%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 80 TVGKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSK 135
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA- 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPG+GRAAGRGVPA
Sbjct: 136 QPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAG 195
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
AP+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 196 APMPQAPAGLAGPVRGVGGPSQQVMTPQ 223
>gi|3142634|gb|AAC78612.1| small nuclear ribonucleoprotein N [Mus musculus]
Length = 240
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 111/149 (74%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKP----KNA 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPIPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|351701359|gb|EHB04278.1| Small nuclear ribonucleoprotein-associated protein B, partial
[Heterocephalus glaber]
Length = 229
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/148 (61%), Positives = 111/148 (75%), Gaps = 5/148 (3%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 2 TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSK 57
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA- 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 58 QAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAG 117
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 118 VPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|27371057|gb|AAH41275.1| Snrpn-prov protein [Xenopus laevis]
Length = 236
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 113/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I++RMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
AP+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GAPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|395506055|ref|XP_003757351.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Sarcophilus harrisii]
Length = 240
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 111/149 (74%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNA 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|381352839|gb|AFG25597.1| SNRPN [Sus scrofa]
Length = 240
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 111/149 (74%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNA 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPIPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|339249835|ref|XP_003373905.1| small nuclear ribonucleoprotein-associated protein B [Trichinella
spiralis]
gi|316969881|gb|EFV53916.1| small nuclear ribonucleoprotein-associated protein B [Trichinella
spiralis]
Length = 199
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/183 (46%), Positives = 114/183 (62%), Gaps = 7/183 (3%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
K+ KM+ +NYRM++ +QD R LVG AFD+++N+VL +CEEFR+ P G+ +
Sbjct: 15 KNHKMIGHLNYRMKIVLQDSRILVGYLKAFDKYLNIVLSECEEFRRYRPKAGR----TVD 70
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLV 124
RE++RTLG VLLRGE ++SM+VEGPP E+ + + GPG+ + GRG+P P+
Sbjct: 71 REEKRTLGFVLLRGEHIVSMSVEGPPLKEDDVPQIPKCGGIPGPGMAKPVGRGMPFVPMP 130
Query: 125 QAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQMPPPV 184
PGL GP+RGVGGPAP MMQPQ P P P M P G P +R PG + PV
Sbjct: 131 GMAPGLQGPIRGVGGPAPAMMQPQYGMPGTP---VPGMAPPRLPGTPMPVRQPGFVSTPV 187
Query: 185 YPG 187
G
Sbjct: 188 VRG 190
>gi|148235975|ref|NP_001080161.1| small nuclear ribonucleoparticle-associated protein (snRNP) mRNA,
clone Sm51 [Xenopus laevis]
gi|114107804|gb|AAI23124.1| Snrpn protein [Xenopus laevis]
Length = 236
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 113/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I++RMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
+P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GSPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|294910891|ref|XP_002777961.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Perkinsus marinus ATCC 50983]
gi|239886025|gb|EER09756.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Perkinsus marinus ATCC 50983]
Length = 167
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/141 (56%), Positives = 100/141 (70%), Gaps = 11/141 (7%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ +++KM Q++NYR+RVT+ D R ++G+FMAFD+HMNLVL D EEFRK+ T
Sbjct: 3 AVGRNTKMQQWLNYRVRVTLHDERIMIGQFMAFDKHMNLVLADTEEFRKVALI------T 56
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAA 121
ERE +R LGL++LRGE +ISMT E PPP + S +AGPG G AAGRGVP A
Sbjct: 57 TTEREVKRMLGLLILRGENIISMTAEAPPPNVKK-----SEGPMAGPGRGHAAGRGVPIA 111
Query: 122 PLVQAQPGLAGPVRGVGGPAP 142
PL QA GL GP+RGVGGPAP
Sbjct: 112 PLGQAPQGLTGPIRGVGGPAP 132
>gi|77020260|ref|NP_001029144.1| small nuclear ribonucleoprotein-associated protein B' isoform 2
[Monodelphis domestica]
gi|10720265|sp|Q9TU66.1|RSMB_MONDO RecName: Full=Small nuclear ribonucleoprotein-associated protein
B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm
protein B'; Short=Sm-B'; Short=SmB'
gi|5870113|gb|AAD54482.1|AF134827_1 small nuclear ribonucleoprotein B' [Monodelphis domestica]
Length = 240
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 111/149 (74%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+ RMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRGVPA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGP+RGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPIRGVGGPSQQVMTPQ 145
>gi|239787841|ref|NP_001155181.1| small ribonucleoprotein particle protein B [Apis mellifera]
Length = 217
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 111/157 (70%), Gaps = 9/157 (5%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KMLQ INYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ P KN
Sbjct: 1 MTIGKNNKMLQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP----KNT 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERED+R LG VLLRGE ++S+TVEGPPPPEE + A GPG+GRAAGRG+P
Sbjct: 57 KQPEREDKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGMGRAAGRGMP- 115
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQP----QISRPP 153
A + GL GPVRGVGGP+ +M P Q+S PP
Sbjct: 116 ANVAGVPAGLQGPVRGVGGPSQQIMTPGGRGQVSAPP 152
>gi|347543711|tpg|DAA05809.1| TPA_inf: small nuclear ribonucleoprotein polypeptide N [Monodelphis
domestica]
Length = 240
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/148 (62%), Positives = 110/148 (74%), Gaps = 5/148 (3%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 2 TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNAK 57
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA- 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRGVPA
Sbjct: 58 QPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGVPAG 117
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 118 VPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|340712457|ref|XP_003394776.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 1 [Bombus terrestris]
gi|340712459|ref|XP_003394777.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 2 [Bombus terrestris]
gi|350399783|ref|XP_003485637.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 1 [Bombus impatiens]
gi|350399786|ref|XP_003485638.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 2 [Bombus impatiens]
Length = 217
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 111/157 (70%), Gaps = 9/157 (5%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KMLQ INYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ P KN
Sbjct: 1 MTIGKNNKMLQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP----KNT 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERED+R LG VLLRGE ++S+TVEGPPPPEE + A GPG+GRAAGRG+P
Sbjct: 57 KQPEREDKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGMGRAAGRGMP- 115
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQP----QISRPP 153
A + GL GPVRGVGGP+ +M P Q+S PP
Sbjct: 116 ANVAGVPAGLQGPVRGVGGPSQQIMTPGGRGQVSAPP 152
>gi|241562203|ref|XP_002401328.1| flagelliform silk protein, putative [Ixodes scapularis]
gi|215499857|gb|EEC09351.1| flagelliform silk protein, putative [Ixodes scapularis]
Length = 241
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 94/148 (63%), Positives = 113/148 (76%), Gaps = 3/148 (2%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++SK++KMLQ INYRMRV +QD R +G F AFD+HMNL+LGDCEEFRK+ KGK
Sbjct: 1 MTISKNNKMLQHINYRMRVILQDSRIFIGTFKAFDKHMNLILGDCEEFRKV---KGKNQA 57
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
+RE++R LGLVLLRGE ++S+TVEGPPPPEE + A GPGIGRAAGRGVPA
Sbjct: 58 KQGDREEKRVLGLVLLRGENIVSLTVEGPPPPEEGLPRVPIPGATPGPGIGRAAGRGVPA 117
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
AP+ A GL GPVRGVGGP+P +M PQ
Sbjct: 118 APVGAAPAGLQGPVRGVGGPSPQVMAPQ 145
>gi|390462470|ref|XP_002747491.2| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B'-like isoform 1 [Callithrix jacchus]
Length = 373
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/148 (60%), Positives = 110/148 (74%), Gaps = 5/148 (3%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ SSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 135 TVGLSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSK 190
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA- 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 191 QAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAG 250
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 251 VPMPQAPAGLAGPVRGVGGPSQQVMTPQ 278
>gi|281338409|gb|EFB13993.1| hypothetical protein PANDA_020738 [Ailuropoda melanoleuca]
Length = 162
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/148 (61%), Positives = 110/148 (74%), Gaps = 5/148 (3%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 4 TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNAK 59
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA- 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPG+GRAAGRGVPA
Sbjct: 60 QPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAG 119
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 120 VPIPQAPAGLAGPVRGVGGPSQQVMTPQ 147
>gi|328773803|gb|EGF83840.1| hypothetical protein BATDEDRAFT_8283, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 213
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 121/160 (75%), Gaps = 13/160 (8%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
S+SK+S++LQ +N+R+++TIQDGR +G+ +AFD+HMNLVL +CEEFRK+ P K +
Sbjct: 1 SLSKNSRILQLLNHRLKITIQDGRTFIGQMLAFDKHMNLVLSECEEFRKIRP----KTKS 56
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVP-A 120
+ERE++R+LGLV+LRGE +IS++VE PPP E K S++A+ GPG+ R AGRG+P A
Sbjct: 57 QQEREEKRSLGLVILRGETIISLSVEAPPPTAEDPKK--SSAALGGPGVARGAGRGLPIA 114
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQI------SRPPI 154
APL A GL GP+RG+GGPAP MQPQ+ SRPPI
Sbjct: 115 APLTAAPAGLGGPIRGIGGPAPQSMQPQMGPGMGFSRPPI 154
>gi|311274576|ref|XP_003134384.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Sus scrofa]
Length = 143
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/142 (62%), Positives = 108/142 (76%), Gaps = 5/142 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPA 141
P+ QA GLAGPVRGVGGP+
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPS 138
>gi|156540632|ref|XP_001599264.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B
[Nasonia vitripennis]
Length = 217
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 87/164 (53%), Positives = 112/164 (68%), Gaps = 9/164 (5%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KMLQ INYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ P KN
Sbjct: 1 MTIGKNNKMLQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP----KNT 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LG VLLRGE ++S+TVEGPPPPEE + GPG+GRA GRG+PA
Sbjct: 57 KQPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGTNTGPGVGRATGRGMPA 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTY 164
+ GL GPVRG+GGP+ +M P I Q+SAPP +
Sbjct: 117 N-ISGIPAGLQGPVRGIGGPSQQIMTPGIR----GQVSAPPQMH 155
>gi|66823569|ref|XP_645139.1| hypothetical protein DDB_G0272320 [Dictyostelium discoideum AX4]
gi|74857874|sp|Q55A45.1|RSMB_DICDI RecName: Full=Small nuclear ribonucleoprotein-associated protein B;
Short=snRNP-B; AltName: Full=Sm protein B; Short=Sm-B;
Short=SmB
gi|60473366|gb|EAL71312.1| hypothetical protein DDB_G0272320 [Dictyostelium discoideum AX4]
Length = 274
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 84/147 (57%), Positives = 103/147 (70%), Gaps = 18/147 (12%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
KSSKMLQ+INYRMRVTIQDGR +VG+F+AFD+HMN+V+ D EEFR++ KGK E+
Sbjct: 6 KSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQ-KGK-----ED 59
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAV-----AGPGIGRAAGR--- 116
RE++RTLG++L+RGE V+SM+VE PPP E AK + S + GPGIGRA GR
Sbjct: 60 REEKRTLGMILIRGETVVSMSVEAPPPEE---AKLAATSKMPPQIPGGPGIGRAVGRGMP 116
Query: 117 -GVPAAPLVQAQPGLAGPVRGVGGPAP 142
G GL GPVRGVGGPAP
Sbjct: 117 MGGMGMGGSGPMSGLTGPVRGVGGPAP 143
>gi|270008314|gb|EFA04762.1| hypothetical protein TcasGA2_TC030631 [Tribolium castaneum]
Length = 214
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/147 (57%), Positives = 107/147 (72%), Gaps = 6/147 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M+M K++KMLQ INYR+R+T+QD R +G F AFD+HMN++LGDCEEFRK+ P N
Sbjct: 1 MTMGKNNKMLQHINYRVRITLQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKP-----KN 55
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
+ ERE++R LG VLLRGE ++S+TVEGPPPPEE + A GPGIGRAAGRG+PA
Sbjct: 56 SKVEREEKRVLGFVLLRGESIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRAAGRGMPA 115
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQP 147
+ GL GPVRGVGGP+ +M P
Sbjct: 116 G-MGGVPVGLQGPVRGVGGPSQQVMTP 141
>gi|383852431|ref|XP_003701731.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Megachile rotundata]
Length = 219
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 110/156 (70%), Gaps = 9/156 (5%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ K++KMLQ INYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ P KN
Sbjct: 4 TIGKNNKMLQHINYRIRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP----KNTK 59
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAA 121
ERED+R LG VLLRGE ++S+TVEGPPPPEE + A GPG+GRAAGRG+P A
Sbjct: 60 QPEREDKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGMGRAAGRGMP-A 118
Query: 122 PLVQAQPGLAGPVRGVGGPAPGMMQP----QISRPP 153
+ GL GPVRGVGGP+ +M P Q+S PP
Sbjct: 119 NVAGVPAGLQGPVRGVGGPSQQIMTPGGRGQVSAPP 154
>gi|330802101|ref|XP_003289059.1| hypothetical protein DICPUDRAFT_88331 [Dictyostelium purpureum]
gi|325080893|gb|EGC34430.1| hypothetical protein DICPUDRAFT_88331 [Dictyostelium purpureum]
Length = 250
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 80/145 (55%), Positives = 102/145 (70%), Gaps = 15/145 (10%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
M KSSKMLQ+INYRM+VTIQDGR +VG+F+AFD+HMN+V+ D EEFR++ K
Sbjct: 4 MPKSSKMLQYINYRMKVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRI------KQKGK 57
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAV-----AGPGIGRAAGRG 117
E+RE++RTLG++L+RGE V+SM+VE PPP E AK + S + GPGIGRAA
Sbjct: 58 EDREEKRTLGMLLIRGETVVSMSVEAPPPEE---AKLAATSKMPPQIPGGPGIGRAA-GR 113
Query: 118 VPAAPLVQAQPGLAGPVRGVGGPAP 142
+ + GL GPVRGVGGPAP
Sbjct: 114 GIGLGVGGSSAGLTGPVRGVGGPAP 138
>gi|226468892|emb|CAX76474.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 231
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 105/155 (67%), Gaps = 12/155 (7%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
+SK++K+ Q +NYR+R T+QDGRQLVG F AFDRHMN++L DC+EFR++ K K +
Sbjct: 3 VSKNAKISQHVNYRIRCTMQDGRQLVGTFKAFDRHMNIILCDCDEFRQV---KSKTAKQD 59
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRA----KAVSASAVAGPGIGRAAGRGV 118
++R+++R+LGLVLLRGE V++M V+GPPPPE++ A + S P G A GRG+
Sbjct: 60 KDRQEKRSLGLVLLRGEHVVTMNVDGPPPPEDAARVPLPTAGAWSTGVKPLAGIAVGRGM 119
Query: 119 -----PAAPLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
AA GL GPV GVG PAP +MQP+
Sbjct: 120 PLATPAAAIAPVPPAGLGGPVWGVGAPAPSLMQPR 154
>gi|324510990|gb|ADY44587.1| Small nuclear ribonucleoprotein-associated protein B [Ascaris suum]
Length = 165
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 100/149 (67%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++SK++KM+ +NYRMRV +QD R VG F AFD+HMN++L +CEEFR + P GKK+
Sbjct: 1 MTISKNNKMMAHLNYRMRVALQDSRTFVGYFRAFDKHMNILLSECEEFRAIKPKPGKKSA 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRG--V 118
EE RTLGLVLLRGE ++SMTV+GPP ++ K A +AGPG+ + AGRG +
Sbjct: 61 PEEE---MRTLGLVLLRGEHIVSMTVDGPPAKDDDSVKLPKAGGLAGPGVAKPAGRGVPM 117
Query: 119 PAAPLVQAQPGLAGPVRGVGGPAPGMMQP 147
PGL G VRG+GGP +MQP
Sbjct: 118 VPPVAAAPPPGLQGAVRGIGGPGMSIMQP 146
>gi|91082993|ref|XP_974329.1| PREDICTED: similar to Small nuclear ribonucleoprotein-associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
[Tribolium castaneum]
Length = 212
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 84/145 (57%), Positives = 105/145 (72%), Gaps = 6/145 (4%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
M K++KMLQ INYR+R+T+QD R +G F AFD+HMN++LGDCEEFRK+ P N+
Sbjct: 1 MGKNNKMLQHINYRVRITLQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKP-----KNSK 55
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAP 122
ERE++R LG VLLRGE ++S+TVEGPPPPEE + A GPGIGRAAGRG+PA
Sbjct: 56 VEREEKRVLGFVLLRGESIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRAAGRGMPAG- 114
Query: 123 LVQAQPGLAGPVRGVGGPAPGMMQP 147
+ GL GPVRGVGGP+ +M P
Sbjct: 115 MGGVPVGLQGPVRGVGGPSQQVMTP 139
>gi|337461|gb|AAA36579.1| small nuclear ribonucleoprotein particle (SmB'), partial [Homo
sapiens]
Length = 233
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 106/142 (74%), Gaps = 5/142 (3%)
Query: 8 KMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEERED 67
KMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+ ERE+
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSKQAEREE 56
Query: 68 RRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA-APLVQA 126
+R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA P+ QA
Sbjct: 57 KRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQA 116
Query: 127 QPGLAGPVRGVGGPAPGMMQPQ 148
GLAGPVRGVGGP+ +M PQ
Sbjct: 117 PAGLAGPVRGVGGPSQQVMTPQ 138
>gi|194761826|ref|XP_001963124.1| GF14098 [Drosophila ananassae]
gi|190616821|gb|EDV32345.1| GF14098 [Drosophila ananassae]
Length = 199
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 110/162 (67%), Gaps = 6/162 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KM+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ KN+
Sbjct: 1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIR----SKNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LG VLLRGE ++S+TVEGPPPPEE + A GPGIGR AGRGVP
Sbjct: 57 KVPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGVPL 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ-ISRPPIPQLSAPP 161
+ GL GPVRGVGGPAP M P P P + APP
Sbjct: 117 N-MSSVPAGLQGPVRGVGGPAPSHMAPMGRGVPRAPMMGAPP 157
>gi|337459|gb|AAA36578.1| small nuclear ribonucleoprotein particle (SmB), partial [Homo
sapiens]
Length = 224
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/142 (61%), Positives = 106/142 (74%), Gaps = 5/142 (3%)
Query: 8 KMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEERED 67
KMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+ ERE+
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSKQAEREE 56
Query: 68 RRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA-APLVQA 126
+R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA P+ QA
Sbjct: 57 KRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQA 116
Query: 127 QPGLAGPVRGVGGPAPGMMQPQ 148
GLAGPVRGVGGP+ +M PQ
Sbjct: 117 PAGLAGPVRGVGGPSQQVMTPQ 138
>gi|343960905|dbj|BAK62042.1| zinc finger protein 343 [Pan troglodytes]
Length = 319
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/141 (61%), Positives = 105/141 (74%), Gaps = 5/141 (3%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
MLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+ ERE++
Sbjct: 1 MLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSKQAEREEK 56
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA-APLVQAQ 127
R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA P+ QA
Sbjct: 57 RVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAP 116
Query: 128 PGLAGPVRGVGGPAPGMMQPQ 148
GLAGPVRGVGGP+ +M PQ
Sbjct: 117 AGLAGPVRGVGGPSQQVMTPQ 137
>gi|444729301|gb|ELW69726.1| Small nuclear ribonucleoprotein-associated protein N [Tupaia
chinensis]
Length = 234
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 78/149 (52%), Positives = 97/149 (65%), Gaps = 10/149 (6%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QD R +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDSRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAK-AVSASAVAGPGIGRAAGRGVP 119
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ AG +P
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARXXXXXXXXXXXXXXXXAGFPMP 116
Query: 120 AAPLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
AP GLAGPVRGVGGP+ +M PQ
Sbjct: 117 QAP-----AGLAGPVRGVGGPSQQVMTPQ 140
>gi|256075617|ref|XP_002574114.1| small nuclear ribonucleoprotein-associated protein [Schistosoma
mansoni]
gi|353233403|emb|CCD80758.1| putative small nuclear ribonucleoprotein-associated protein
[Schistosoma mansoni]
Length = 199
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 106/157 (67%), Gaps = 12/157 (7%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M +SK++K+ Q +NYR+R T+QDGRQLVG F AFDRHMN++L DC+EFR++ K K
Sbjct: 1 MPVSKNAKISQHVNYRIRCTMQDGRQLVGTFKAFDRHMNIILCDCDEFRQV---KNKAAK 57
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRA----KAVSASAVAGPGIGRAAGR 116
+++R+++R LGLVLLRGE V++M V+GPPPPE++ A + S P G A GR
Sbjct: 58 QDKDRQEKRALGLVLLRGEHVVTMNVDGPPPPEDAARVPLPTAGAWSTGVKPLTGIAVGR 117
Query: 117 GV-----PAAPLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
G+ AA GL GPV GVG PAPG+MQP+
Sbjct: 118 GMPLATPAAAIAPAPPAGLGGPVWGVGAPAPGLMQPR 154
>gi|328875018|gb|EGG23383.1| hypothetical protein DFA_05515 [Dictyostelium fasciculatum]
Length = 897
Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats.
Identities = 77/138 (55%), Positives = 100/138 (72%), Gaps = 10/138 (7%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
KSSKMLQ+INYRM++TI DGR +VG+F+AFD+HMN+V+ D EEFR++ K E+
Sbjct: 684 KSSKMLQYINYRMKITINDGRIIVGRFLAFDKHMNIVVCDAEEFRRI------KQKGKED 737
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLV 124
RE++RTLG++++RGE VIS++ E PPPEE +AKA GPGIGRA GRG+
Sbjct: 738 REEKRTLGMLVIRGETVISLSAES-PPPEEIKAKA-PPQIPGGPGIGRAIGRGMGMN--A 793
Query: 125 QAQPGLAGPVRGVGGPAP 142
A GL GPVRG+GG AP
Sbjct: 794 AATAGLTGPVRGIGGVAP 811
>gi|332022693|gb|EGI62970.1| Small nuclear ribonucleoprotein-associated protein B [Acromyrmex
echinatior]
Length = 207
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 110/157 (70%), Gaps = 11/157 (7%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ K++KMLQ INYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ P KN
Sbjct: 2 TIGKNNKMLQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP----KNTK 57
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAA 121
ERE++R LG VLLRGE ++S+TVEGPPPPEE + A GPG+ RAAGRG+PA
Sbjct: 58 QPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGMARAAGRGMPAN 117
Query: 122 PLVQAQP-GLAGPVRGVGGPAPGMMQP----QISRPP 153
V P GL GPVRGVGGP+ +M P Q+S PP
Sbjct: 118 --VAGVPAGLQGPVRGVGGPSQQIMTPGSRGQVSAPP 152
>gi|322779204|gb|EFZ09540.1| hypothetical protein SINV_80286 [Solenopsis invicta]
Length = 344
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/164 (55%), Positives = 114/164 (69%), Gaps = 11/164 (6%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ K++KMLQ INYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ P KN
Sbjct: 130 TIGKNNKMLQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP----KNTK 185
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAA 121
ERE++R LG VLLRGE ++S+TVEGPPPPEE + A GPG+ RAAGRG+PA
Sbjct: 186 QPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGMARAAGRGMPAN 245
Query: 122 PLVQAQP-GLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTY 164
V P GL GPVRGVGGP+ +M P SR Q+SAPP +
Sbjct: 246 --VAGVPAGLQGPVRGVGGPSQQIMTPG-SR---GQVSAPPQIH 283
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/119 (57%), Positives = 88/119 (73%), Gaps = 4/119 (3%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ K++KMLQ INYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ P KN
Sbjct: 1 TIGKNNKMLQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP----KNTK 56
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LG VLLRGE ++S+TVEGPPPPEE + A GPG+ RAAGRG+PA
Sbjct: 57 QPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGMARAAGRGMPA 115
>gi|307105891|gb|EFN54138.1| hypothetical protein CHLNCDRAFT_135527 [Chlorella variabilis]
Length = 159
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/93 (70%), Positives = 77/93 (82%), Gaps = 3/93 (3%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
SKS K+L INYRMRVT+ DGRQ+VG+FMAFDRHMNLVLGD EEFRKLPP KG E
Sbjct: 3 SKSGKLLALINYRMRVTVVDGRQIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGV---AEE 59
Query: 64 EREDRRTLGLVLLRGEEVISMTVEGPPPPEESR 96
+RE RR LGLV+LRG+EV+ +T+EGPPP +ESR
Sbjct: 60 DREQRRVLGLVILRGDEVVDLTIEGPPPADESR 92
>gi|344236342|gb|EGV92445.1| Small nuclear ribonucleoprotein-associated protein B [Cricetulus
griseus]
Length = 223
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/141 (61%), Positives = 105/141 (74%), Gaps = 5/141 (3%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
MLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+ ERE++
Sbjct: 1 MLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSKQAEREEK 56
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA-APLVQAQ 127
R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA P+ QA
Sbjct: 57 RVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAP 116
Query: 128 PGLAGPVRGVGGPAPGMMQPQ 148
GLAGPVRGVGGP+ +M PQ
Sbjct: 117 AGLAGPVRGVGGPSQQVMTPQ 137
>gi|226468890|emb|CAX76473.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468902|emb|CAX76479.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 198
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 106/157 (67%), Gaps = 12/157 (7%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M +SK++K+ Q +NYR+R T+QDGRQLVG F AFDRHMN++L DC+EFR++ K K
Sbjct: 1 MPVSKNAKISQHVNYRIRCTMQDGRQLVGTFKAFDRHMNIILCDCDEFRQV---KSKTAK 57
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRA----KAVSASAVAGPGIGRAAGR 116
+++R+++R+LGLVLLRGE V++M V+GPPPPE++ A + S P G A GR
Sbjct: 58 QDKDRQEKRSLGLVLLRGEHVVTMNVDGPPPPEDAARVPLPTAGAWSTGVKPLAGIAVGR 117
Query: 117 GV-----PAAPLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
G+ AA GL GPV GVG PAP +MQP+
Sbjct: 118 GMPLATPAAAIAPVPPAGLGGPVWGVGAPAPSLMQPR 154
>gi|195339821|ref|XP_002036515.1| GM11667 [Drosophila sechellia]
gi|195578207|ref|XP_002078957.1| GD22258 [Drosophila simulans]
gi|194130395|gb|EDW52438.1| GM11667 [Drosophila sechellia]
gi|194190966|gb|EDX04542.1| GD22258 [Drosophila simulans]
Length = 199
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/162 (54%), Positives = 109/162 (67%), Gaps = 6/162 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KM+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ KN+
Sbjct: 1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIR----SKNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LG VLLRGE ++S+TVEGPPPPEE + A GPGIGR AGRGVP
Sbjct: 57 KVPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGVPI 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ-ISRPPIPQLSAPP 161
L GL GPVRGVGGPA M P P P + APP
Sbjct: 117 N-LSAVPAGLQGPVRGVGGPAQQHMAPMGRGVPRAPMMGAPP 157
>gi|296222281|ref|XP_002757118.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Callithrix jacchus]
Length = 240
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/149 (58%), Positives = 109/149 (73%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDG+ +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGQIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
E+E++R LGL LLRGE ++SMT EGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEKEEKRVLGLALLRGENLVSMTGEGPPPKDTGIAQVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGP RGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPGRGVGGPSQQVMTPQ 145
>gi|56759110|gb|AAW27695.1| SJCHGC06652 protein [Schistosoma japonicum]
gi|226468894|emb|CAX76475.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468896|emb|CAX76476.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468898|emb|CAX76477.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468900|emb|CAX76478.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468904|emb|CAX76480.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468906|emb|CAX76481.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226472872|emb|CAX71122.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 198
Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 105/157 (66%), Gaps = 12/157 (7%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M +SK++K+ Q +NYR+R T+QDGRQLVG F AFDRHMN++L DC+EFR++ K K
Sbjct: 1 MPVSKNAKISQHVNYRIRCTMQDGRQLVGTFKAFDRHMNIILCDCDEFRQV---KSKTAK 57
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRA----KAVSASAVAGPGIGRAAGR 116
+++R+++R LGLVLLRGE V++M V+GPPPPE++ A + S P G A GR
Sbjct: 58 QDKDRQEKRALGLVLLRGEHVVTMNVDGPPPPEDAARVPLPTAGAWSTGVKPLAGIAVGR 117
Query: 117 GV-----PAAPLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
G+ AA GL GPV GVG PAP +MQP+
Sbjct: 118 GMPLATPAAAIAPVPPAGLGGPVWGVGAPAPSLMQPR 154
>gi|195118784|ref|XP_002003916.1| GI18165 [Drosophila mojavensis]
gi|195384904|ref|XP_002051152.1| GJ14598 [Drosophila virilis]
gi|193914491|gb|EDW13358.1| GI18165 [Drosophila mojavensis]
gi|194147609|gb|EDW63307.1| GJ14598 [Drosophila virilis]
Length = 198
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 109/162 (67%), Gaps = 6/162 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KM+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ KN+
Sbjct: 1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIR----SKNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LG VLLRGE ++S+TVEGPPPPEE + A GPGIGR AGRGVP
Sbjct: 57 KVPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGVPM 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ-ISRPPIPQLSAPP 161
+ GL GPVRGVGGPA M P P P + APP
Sbjct: 117 N-ISSVPAGLQGPVRGVGGPAQQHMAPMGRGVPRAPMMGAPP 157
>gi|195051180|ref|XP_001993048.1| GH13302 [Drosophila grimshawi]
gi|193900107|gb|EDV98973.1| GH13302 [Drosophila grimshawi]
Length = 198
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 109/162 (67%), Gaps = 6/162 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KM+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ KN+
Sbjct: 1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIR----SKNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LG VLLRGE ++S+TVEGPPPPEE + A GPGIGR AGRGVP
Sbjct: 57 KVPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGVPM 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ-ISRPPIPQLSAPP 161
+ GL GPVRGVGGPA M P P P + APP
Sbjct: 117 N-ISSVPAGLQGPVRGVGGPAQQHMAPMGRGVPRAPMMGAPP 157
>gi|194859949|ref|XP_001969485.1| GG23931 [Drosophila erecta]
gi|195473671|ref|XP_002089116.1| SmB [Drosophila yakuba]
gi|38048415|gb|AAR10110.1| similar to Drosophila melanogaster SmB, partial [Drosophila yakuba]
gi|190661352|gb|EDV58544.1| GG23931 [Drosophila erecta]
gi|194175217|gb|EDW88828.1| SmB [Drosophila yakuba]
Length = 199
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/163 (54%), Positives = 111/163 (68%), Gaps = 8/163 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KM+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ KN+
Sbjct: 1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIR----SKNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LG VLLRGE ++S+TVEGPPPPEE + A GPGIGR AGRGVP
Sbjct: 57 KVPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGVPI 116
Query: 121 APLVQAQP-GLAGPVRGVGGPAPGMMQPQ-ISRPPIPQLSAPP 161
+ A P GL GPVRGVGGPA M P P P + APP
Sbjct: 117 N--MSAVPAGLQGPVRGVGGPAQQHMAPMGRGVPRAPMMGAPP 157
>gi|344252129|gb|EGW08233.1| Small nuclear ribonucleoprotein-associated protein N [Cricetulus
griseus]
Length = 232
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 87/141 (61%), Positives = 104/141 (73%), Gaps = 5/141 (3%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
MLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN ERE++
Sbjct: 1 MLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNAKQPEREEK 56
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA-APLVQAQ 127
R LGLVLLRGE ++SMTVEGPPP + A+ A A GPG+GRAAGRGVPA P+ QA
Sbjct: 57 RVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAP 116
Query: 128 PGLAGPVRGVGGPAPGMMQPQ 148
GLAGPVRGVGGP+ +M PQ
Sbjct: 117 AGLAGPVRGVGGPSQQVMTPQ 137
>gi|320544917|ref|NP_001188780.1| small ribonucleoprotein particle protein SmB [Drosophila
melanogaster]
gi|10720262|sp|Q05856.1|RSMB_DROME RecName: Full=Small nuclear ribonucleoprotein-associated protein B;
Short=snRNP-B; AltName: Full=Sm protein B; Short=Sm-B;
Short=SmB
gi|290272|gb|AAA28858.1| ribonucleoprotein [Drosophila melanogaster]
gi|16769000|gb|AAL28719.1| LD14049p [Drosophila melanogaster]
gi|220952928|gb|ACL89007.1| SmB-PA [synthetic construct]
gi|318068414|gb|ADV37030.1| small ribonucleoprotein particle protein SmB [Drosophila
melanogaster]
Length = 199
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 109/162 (67%), Gaps = 6/162 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KM+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ KN+
Sbjct: 1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIR----SKNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LG VLLRGE ++S+TVEGPPPPEE + A GPGIGR AGRG+P
Sbjct: 57 KVPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGMPI 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ-ISRPPIPQLSAPP 161
L GL GPVRGVGGPA M P P P + APP
Sbjct: 117 N-LSAVPAGLQGPVRGVGGPAQQHMAPMGRGVPRAPMMGAPP 157
>gi|72169980|ref|XP_786252.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Strongylocentrotus purpuratus]
Length = 204
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/146 (54%), Positives = 103/146 (70%), Gaps = 7/146 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M + ++SKM+Q+INYRMRV +QDGR +G F+AFD+HMN+VLGDCEEFRKL K
Sbjct: 1 MVVGRTSKMVQYINYRMRVNLQDGRTFIGTFLAFDKHMNIVLGDCEEFRKLRAKSAKA-- 58
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGV-P 119
+E++R LGLVLLRGE ++SMTVEG P ++S + +GPG+ RAAGRG+
Sbjct: 59 --PAKEEKRVLGLVLLRGEHLVSMTVEG--PAKDSGPRVPMPGGGSGPGMARAAGRGIPA 114
Query: 120 AAPLVQAQPGLAGPVRGVGGPAPGMM 145
A+ + A GLAGPVRGVGGP+ M
Sbjct: 115 ASASMSAPAGLAGPVRGVGGPSQSHM 140
>gi|289742143|gb|ADD19819.1| small ribonucleoprotein particle protein B [Glossina morsitans
morsitans]
Length = 200
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/162 (52%), Positives = 108/162 (66%), Gaps = 6/162 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KM+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ KN
Sbjct: 1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIR----SKNA 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LG VLLRGE ++S+TVEGPPPPEE + A GPG+ RAAGRGVP
Sbjct: 57 KVPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAATGPGMSRAAGRGVP- 115
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ-ISRPPIPQLSAPP 161
+ GL GPVRG+GGPA M P S P P + PP
Sbjct: 116 VNISSVPAGLQGPVRGIGGPAQQHMTPMGRSVPRAPMMGGPP 157
>gi|195146742|ref|XP_002014343.1| GL19145 [Drosophila persimilis]
gi|194106296|gb|EDW28339.1| GL19145 [Drosophila persimilis]
Length = 205
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 111/162 (68%), Gaps = 8/162 (4%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ K++KM+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ KN+
Sbjct: 8 TIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIR----SKNSK 63
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAA 121
ERE++R LG VLLRGE ++S+TVEGPPPPEE + A +GPGIGR AGRGVP
Sbjct: 64 VPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAASGPGIGRIAGRGVPLN 123
Query: 122 PLVQAQP-GLAGPVRGVGGPAPGMMQPQ-ISRPPIPQLSAPP 161
+ A P GL GPVRG+GGPA M P P P + APP
Sbjct: 124 --MSAVPAGLQGPVRGIGGPAQQHMAPMGRGVPRAPMMGAPP 163
>gi|339249593|ref|XP_003373784.1| putative LSM domain protein [Trichinella spiralis]
gi|316970025|gb|EFV54033.1| putative LSM domain protein [Trichinella spiralis]
Length = 229
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 116/204 (56%), Gaps = 24/204 (11%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKF-----------------MAFDRHMNLVLG 43
+++ KS KM+ +NYR+++ +QD R L+G FD++MN+VL
Sbjct: 24 VTVGKSHKMIGHLNYRVKIVLQDSRILIGYLKGIFRIFIFDDRTDFLRTTFDKYMNVVLS 83
Query: 44 DCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSAS 103
DCEEFR+ P +G+ ERE++RTLG +LLRGE ++SM+V+GPP ++ +
Sbjct: 84 DCEEFRRYRPKEGR----TAEREEKRTLGFILLRGEHIVSMSVDGPPLKDDDVPQIPKCG 139
Query: 104 AVAGPGIGRAAGRGVPAAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMT 163
+ GPG+ + GRG+P P+ PGL GP+RGVGGPA MMQPQ P P P M
Sbjct: 140 GIPGPGMAKPVGRGMPFVPMPGMAPGLQGPIRGVGGPATAMMQPQYGMPGTPM---PGMV 196
Query: 164 YPATSGGPPVIRPPGQMPPPVYPG 187
P G P +R PG P P+ G
Sbjct: 197 PPRLPGTPMPVRQPGFTPAPLMRG 220
>gi|431917322|gb|ELK16855.1| Small nuclear ribonucleoprotein-associated protein N [Pteropus
alecto]
Length = 225
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 131/243 (53%), Gaps = 21/243 (8%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
MLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN ERE++
Sbjct: 1 MLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNAKQPEREEK 56
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA-APLVQAQ 127
R LGLVLLRGE ++SMTVEGPPP + A+ A A GPG+GRAAGRGVPA P+ QA
Sbjct: 57 RVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPIPQAP 116
Query: 128 PGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYP-ATSGGPPVIRPPGQMPPPVYP 186
GLAGPVRGVGGP+ +R S PP S I+ G++ V
Sbjct: 117 AGLAGPVRGVGGPSQQTRFAAAARCA----SRPPWARSHVNSAELKCIKYLGRLVISVLV 172
Query: 187 GQGPPMARGPPPQGPPQGFGVRPPQQFPMPPQQFGQRPMVPPPPGPMMRGPPSGPPRPGM 246
+R G+ P F P +R V PPGP + PS G
Sbjct: 173 VAVSRYSR----------LGL-TPSLFAHPGDDRRKRAFVTGPPGPSVWLAPSSVAAEGR 221
Query: 247 PNA 249
N
Sbjct: 222 RNC 224
>gi|307193681|gb|EFN76364.1| Small nuclear ribonucleoprotein-associated protein B [Harpegnathos
saltator]
Length = 208
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 108/156 (69%), Gaps = 9/156 (5%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
MLQ INYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ P KN ERE++
Sbjct: 1 MLQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP----KNTKQPEREEK 56
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQAQP 128
R LG VLLRGE ++S+TVEGPPPPEE + A GPG+ RAAGRG+PA+ +
Sbjct: 57 RVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGMARAAGRGMPAS-VAGVPA 115
Query: 129 GLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTY 164
GL GPVRGVGGP+ +M P SR Q+SAPP +
Sbjct: 116 GLQGPVRGVGGPSQQIMTPG-SR---GQVSAPPQIH 147
>gi|355721040|gb|AES07133.1| Small nuclear ribonucleoprotein associated protein B [Mustela
putorius furo]
Length = 132
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 102/136 (75%), Gaps = 5/136 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVR 135
P+ QA GLAGPVR
Sbjct: 117 GVPMPQAPAGLAGPVR 132
>gi|307188198|gb|EFN73030.1| Small nuclear ribonucleoprotein-associated protein B [Camponotus
floridanus]
Length = 209
Score = 140 bits (352), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 107/156 (68%), Gaps = 9/156 (5%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
MLQ INYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ P KN ERE++
Sbjct: 1 MLQHINYRVRIILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP----KNTKQPEREEK 56
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQAQP 128
R LG VLLRGE ++S+TVEGPPPPEE + A GPG+ RAAGRG+PA +
Sbjct: 57 RVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGMARAAGRGMPAN-VAGVPA 115
Query: 129 GLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTY 164
GL GPVRGVGGP+ +M P SR Q+SAPP +
Sbjct: 116 GLQGPVRGVGGPSQQIMTPG-SR---GQVSAPPQIH 147
>gi|145345876|ref|XP_001417425.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577652|gb|ABO95718.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 145
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/119 (57%), Positives = 84/119 (70%), Gaps = 7/119 (5%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M +S++SKML FIN+R+RVT+ DGR LVG F AFDRH+N+VL DCEE RKLPP KG +
Sbjct: 1 MGVSRTSKMLAFINHRVRVTLVDGRALVGTFTAFDRHVNVVLSDCEEHRKLPPKKGVDED 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVP 119
ER RR LG VL+RGEEV+S+TVEGPP +A+ S AG G AGRG+P
Sbjct: 61 ---ERHVRRVLGFVLVRGEEVVSLTVEGPPVGSGKKARIAS----AGTGTASGAGRGMP 112
>gi|5870130|gb|AAD54489.1| small nuclear ribonucleoprotein B' [Homo sapiens]
Length = 243
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 78/105 (74%), Gaps = 4/105 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAV 105
ERE++R LGLVLLRGE ++SMTVEGPPP + S+ S+S
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDVSQNWYCSSSTC 101
>gi|5870129|gb|AAD54488.1| small nuclear ribonucleoprotein B [Homo sapiens]
Length = 234
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/105 (58%), Positives = 78/105 (74%), Gaps = 4/105 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAV 105
ERE++R LGLVLLRGE ++SMTVEGPPP + S+ S+S
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDVSQNWYCSSSTC 101
>gi|221113173|ref|XP_002160894.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Hydra magnipapillata]
Length = 179
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 91/151 (60%), Positives = 113/151 (74%), Gaps = 4/151 (2%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
+ KS+KMLQ INYRMR +QDGR +G F+AFD+HMNL+LGDC+EFRK+ P K
Sbjct: 4 LGKSAKMLQHINYRMRCQLQDGRTFIGTFLAFDKHMNLILGDCDEFRKIKPKTNK--GVE 61
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAP 122
+E+E++R LGLVLLRGE ++SMTVE PP E+ R K +ASA AG G GRAAGRG+P AP
Sbjct: 62 KEKEEKRALGLVLLRGEHLVSMTVEAPPSKED-RNKTPAASASAGTGAGRAAGRGIP-AP 119
Query: 123 LVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 153
+ A GLAGPVRGVGGP+ +M PQ+ PP
Sbjct: 120 SMGAPVGLAGPVRGVGGPSQQVMTPQMGAPP 150
>gi|198475808|ref|XP_001357165.2| GA18820 [Drosophila pseudoobscura pseudoobscura]
gi|198137969|gb|EAL34232.2| GA18820 [Drosophila pseudoobscura pseudoobscura]
Length = 191
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 105/155 (67%), Gaps = 8/155 (5%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
M+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ KN+ ERE++
Sbjct: 1 MIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIR----SKNSKVPEREEK 56
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQAQP 128
R LG VLLRGE ++S+TVEGPPPPEE + A +GPGIGR AGRGVP + A P
Sbjct: 57 RVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAASGPGIGRIAGRGVPLN--MSAVP 114
Query: 129 -GLAGPVRGVGGPAPGMMQPQ-ISRPPIPQLSAPP 161
GL GPVRG+GGPA M P P P + APP
Sbjct: 115 AGLQGPVRGIGGPAQQHMAPMGRGVPRAPMMGAPP 149
>gi|195434134|ref|XP_002065058.1| GK14876 [Drosophila willistoni]
gi|194161143|gb|EDW76044.1| GK14876 [Drosophila willistoni]
Length = 191
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/155 (55%), Positives = 104/155 (67%), Gaps = 8/155 (5%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
M+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ KN+ ERE++
Sbjct: 1 MIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIR----SKNSKVPEREEK 56
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQAQP 128
R LG VLLRGE ++S+TVEGPPPPEE + A GPGIGR AGRGVP + A P
Sbjct: 57 RVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGVPMN--ISAVP 114
Query: 129 -GLAGPVRGVGGPAPGMMQPQ-ISRPPIPQLSAPP 161
GL GPVRGVGGPA M P P P + APP
Sbjct: 115 AGLQGPVRGVGGPAQQHMAPMGRGVPRAPMMGAPP 149
>gi|157128615|ref|XP_001655156.1| small nuclear ribonucleoprotein-associated protein [Aedes aegypti]
gi|94469378|gb|ABF18538.1| U1 snRNP component [Aedes aegypti]
gi|108882220|gb|EAT46445.1| AAEL002377-PA [Aedes aegypti]
Length = 205
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 107/158 (67%), Gaps = 10/158 (6%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KM+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ P KN
Sbjct: 1 MTIGKNNKMIQLLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP----KNT 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LG VLLRG ++S+TVEGPPPPEE + GPG+GR AGRG+P
Sbjct: 57 KLPEREEKRVLGFVLLRGGNIVSLTVEGPPPPEEGLPRVPIPGGAPGPGMGRVAGRGMP- 115
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQP-----QISRPP 153
A + GL GPVRGVGGP+ M P Q+S PP
Sbjct: 116 ANITSVPAGLQGPVRGVGGPSQQHMAPVGRGGQVSAPP 153
>gi|290891746|gb|ADD69960.1| small ribonucleoprotein SmB [Schmidtea mediterranea]
Length = 177
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/147 (48%), Positives = 96/147 (65%), Gaps = 7/147 (4%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
M KS+K+ Q + YRMR T+QDGRQLVG F AFD+HMN++L DC+EFRK+ K +
Sbjct: 1 MPKSAKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFRKV-----KSKGSR 55
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAP 122
EE+E++R+LG VL+RGE+++S+ V+GPPP E+S K GIG+A GRG+PA
Sbjct: 56 EEKEEKRSLGFVLIRGEQLVSLNVDGPPPTEDS-TKTPVLPGTGATGIGQAVGRGMPAFT 114
Query: 123 LVQAQPGLAGPVRGVGGPAPG-MMQPQ 148
V A P G PG MMQP+
Sbjct: 115 TVAAPPPGLTGPPTWGAGPPGSMMQPR 141
>gi|328699352|ref|XP_001945843.2| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Acyrthosiphon pisum]
Length = 235
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 105/157 (66%), Gaps = 4/157 (2%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
++ +K++KM+Q INYR+RVT+QD R +G F AFD+HMNL+L DCEEFR+L
Sbjct: 34 LTFTKNNKMMQHINYRVRVTLQDFRMFIGTFKAFDKHMNLILADCEEFRRLKRKAKGPTI 93
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
E R ++R LG +LLRG+ ++S+T+EGPPPPEE + GPG RAAGRG+P
Sbjct: 94 PAEPRVEKRVLGFILLRGQNIVSITIEGPPPPEEGFPRIPLHGGAGGPGSSRAAGRGMPP 153
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQL 157
A A PGL GPVRGVGGP+P M ++PPI L
Sbjct: 154 AIPSPATPGLQGPVRGVGGPSPAAM----AQPPIRDL 186
>gi|242019279|ref|XP_002430089.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
gi|212515170|gb|EEB17351.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
Length = 187
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/139 (56%), Positives = 102/139 (73%), Gaps = 6/139 (4%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
MLQ INYR+R+T+QD R +G F AFD+HMNL+LGDCEEFR+ P KN+ ER+++
Sbjct: 1 MLQHINYRIRITLQDSRTFIGTFKAFDKHMNLILGDCEEFRRTKP----KNSKEAERDEK 56
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQAQP 128
R+LG VLLRG+ ++S+TVEGPPPPEE + A GPGIG+AAGRG+P ++ A
Sbjct: 57 RSLGFVLLRGQNIVSLTVEGPPPPEEGLPRVPIPGAGPGPGIGKAAGRGLPMGQIIPA-- 114
Query: 129 GLAGPVRGVGGPAPGMMQP 147
GL GPVRGVGGP+ +M P
Sbjct: 115 GLQGPVRGVGGPSQQVMTP 133
>gi|119580346|gb|EAW59942.1| hCG2041320 [Homo sapiens]
Length = 167
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 94/143 (65%), Gaps = 5/143 (3%)
Query: 7 SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEERE 66
+++ Q I+YRM+ +Q+G G F AFD+H+NL+L DC+EFRK+ P KN E E
Sbjct: 1 ARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKP----KNVKQPELE 56
Query: 67 DRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA-APLVQ 125
++ GLVLL GE ++SMTVEG PP A+ A A GPG+ RAAGRGV A P+ Q
Sbjct: 57 EKHFWGLVLLHGENLVSMTVEGLPPKYTGIARVPLAGAAGGPGVVRAAGRGVSAGVPIPQ 116
Query: 126 AQPGLAGPVRGVGGPAPGMMQPQ 148
A GLAGPV GVGGP+ +M PQ
Sbjct: 117 APGGLAGPVPGVGGPSQQVMTPQ 139
>gi|255573046|ref|XP_002527453.1| conserved hypothetical protein [Ricinus communis]
gi|223533188|gb|EEF34945.1| conserved hypothetical protein [Ricinus communis]
Length = 1712
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 112/188 (59%), Gaps = 33/188 (17%)
Query: 80 EVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQAQPGLAGPVRGVGG 139
E+ M+++G P EES AKAVSA++VAG IG+ G G+P APLVQ QPGLA P+RG+GG
Sbjct: 579 ELAYMSIKGQPAEEESHAKAVSATSVAGLSIGQTTGYGMPTAPLVQDQPGLAPPIRGIGG 638
Query: 140 PAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQMPPPVYPGQGPPMARGPPP- 198
A GM+Q QI P + QLSAP +YP PVIRPPGQ P MA PPP
Sbjct: 639 FALGMVQSQIWCPRVSQLSAP--SYPL-----PVIRPPGQ--------GCPLMAWDPPPP 683
Query: 199 ---QGPPQGFGVRPPQQFPMPP--QQFGQRP--MVPPPPGPMMRGPPSGPPRPGMPNAPP 251
P G G FPMPP QQFG+RP M+ ++RG P PPRPGM
Sbjct: 684 HFVARPAYGLG------FPMPPLLQQFGRRPVGMLLQSQVGLLRGLP-APPRPGM---LL 733
Query: 252 PRPGMPPP 259
PR GMPPP
Sbjct: 734 PRLGMPPP 741
>gi|313238876|emb|CBY13872.1| unnamed protein product [Oikopleura dioica]
gi|313241111|emb|CBY33408.1| unnamed protein product [Oikopleura dioica]
Length = 155
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 86/116 (74%), Gaps = 6/116 (5%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
K SK+ ++NYRMRVT+QDGR +G F AFD+HMNL+L DC+EFR++ P KG+
Sbjct: 4 KGSKLNNYLNYRMRVTLQDGRNFIGTFKAFDKHMNLILVDCDEFRRIKPKKGE----TAV 59
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAG--PGIGRAAGRGV 118
RE++RTLGLVLLRGE ++S++V+GPPP E + A+ + + G PG+ RAAGRG+
Sbjct: 60 REEKRTLGLVLLRGEHLVSLSVDGPPPQEHATARVPNMPNMGGRAPGMARAAGRGM 115
>gi|193704556|ref|XP_001950622.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Acyrthosiphon pisum]
Length = 209
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 100/147 (68%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M ++K++KM+Q INYR+RV +QD R +G F AFD+HMNL+L DCEEFR+L
Sbjct: 1 MPVTKNNKMMQHINYRVRVILQDSRMFIGTFKAFDKHMNLILADCEEFRRLKSKAKVPTI 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
E RE++R LG VLLRG+ ++S+T+EGPPPPEE + GPG RAAGRG+P+
Sbjct: 61 PAEPREEKRVLGFVLLRGQNIVSITIEGPPPPEEGLPRVPLPGGGGGPGSSRAAGRGMPS 120
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQP 147
A PGL GPVRGVGGP+P M P
Sbjct: 121 VIPSAATPGLQGPVRGVGGPSPAAMAP 147
>gi|401412392|ref|XP_003885643.1| hypothetical protein NCLIV_060400 [Neospora caninum Liverpool]
gi|325120063|emb|CBZ55615.1| hypothetical protein NCLIV_060400 [Neospora caninum Liverpool]
Length = 169
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 108/173 (62%), Gaps = 26/173 (15%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP----AKGKKN 59
S+++++ Q+INYR+RV +QD R LVG +AFDRHMN+VL D EEFRKL A GK
Sbjct: 3 SRNARLQQWINYRVRVCLQDSRMLVGSLLAFDRHMNIVLADAEEFRKLKIRHKLADGK-- 60
Query: 60 NTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAV--AGPGIGRAAGRG 117
+ EE+E +R++GL+++RGE ++++T E PPP ++ K VS A PG G GRG
Sbjct: 61 HQTEEKEVKRSVGLMMIRGENILTLTAEAPPP---AKPKTVSGPVAPGAIPGRGVPVGRG 117
Query: 118 VPAAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGG 170
V AP+ A GLAGPVRGVGGPA PQL A P+ A GG
Sbjct: 118 VSLAPV--APVGLAGPVRGVGGPA-------------PQLVAAPLGRGAVLGG 155
>gi|158294309|ref|XP_315523.4| AGAP005523-PA [Anopheles gambiae str. PEST]
gi|157015505|gb|EAA11463.4| AGAP005523-PA [Anopheles gambiae str. PEST]
Length = 202
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/161 (51%), Positives = 109/161 (67%), Gaps = 8/161 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KM+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ P KN
Sbjct: 1 MTIGKNNKMIQLLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP----KNT 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LG VLLRG ++S+T+EGPPPPEE + GPG+GR GRG+P
Sbjct: 57 KLPEREEKRVLGFVLLRGGNIVSLTIEGPPPPEEGLPRVPIPGGAGGPGMGRVTGRGMP- 115
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPP 161
A + GL GPVRGVGGP+ M P + R Q+SAPP
Sbjct: 116 ANIAGVPAGLQGPVRGVGGPSQQHMAP-VGRG--QQVSAPP 153
>gi|47211209|emb|CAF90166.1| unnamed protein product [Tetraodon nigroviridis]
Length = 268
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 76/100 (76%), Gaps = 4/100 (4%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ KSSKMLQ I++RMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 9 TVGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSK 64
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVS 101
ERE++R LGLVLLRGE ++SMTVEGPPP + A +V+
Sbjct: 65 QPEREEKRVLGLVLLRGENLVSMTVEGPPPKDACIAVSVN 104
>gi|326932120|ref|XP_003212168.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Meleagris gallopavo]
Length = 224
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/133 (61%), Positives = 99/133 (74%), Gaps = 5/133 (3%)
Query: 17 MRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLL 76
MR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+ ERE++R LGLVLL
Sbjct: 1 MRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSKQPEREEKRVLGLVLL 56
Query: 77 RGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA-APLVQAQPGLAGPVR 135
RGE ++SMTVEGPPP + A+ A A GPG+GRAAGRGVPA AP+ QA GLAGPVR
Sbjct: 57 RGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGAPMPQAPAGLAGPVR 116
Query: 136 GVGGPAPGMMQPQ 148
GVGGP+ +M PQ
Sbjct: 117 GVGGPSQQVMTPQ 129
>gi|239790777|dbj|BAH71926.1| ACYPI006936 [Acyrthosiphon pisum]
Length = 209
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/147 (52%), Positives = 99/147 (67%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M ++K++KM+Q INYR+RV +QD R +G F AFD+HMNL+L DCEEFR+L
Sbjct: 1 MPVTKNNKMMQHINYRVRVILQDSRMFIGTFKAFDKHMNLILADCEEFRRLKSKAKVPTI 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
E RE++R LG VLLRG+ ++S+T+EGPPPPEE + GPG RAAGRG+P+
Sbjct: 61 PAEPREEKRVLGFVLLRGQNIVSITIEGPPPPEEGLPRVPLPGGGGGPGSSRAAGRGMPS 120
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQP 147
A GL GPVRGVGGP+P M P
Sbjct: 121 VIPSAATSGLQGPVRGVGGPSPAAMAP 147
>gi|441617090|ref|XP_003277213.2| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Nomascus leucogenys]
Length = 248
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 85/148 (57%), Gaps = 35/148 (23%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 41 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNA 96
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 97 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDXXXXXX--------------------- 135
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
PVRGVGGP+ +M PQ
Sbjct: 136 ----------XXPVRGVGGPSQQVMTPQ 153
>gi|291396691|ref|XP_002714848.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B/B-like
[Oryctolagus cuniculus]
Length = 240
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/149 (59%), Positives = 109/149 (73%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +Q GR +G F AFD+H+NL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQHGRIFIGTFKAFDKHVNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLL GE ++SMTVEGPPP A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLLGENLVSMTVEGPPPKNTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>gi|124487908|gb|ABN12037.1| small nuclear ribonucleoprotein B'-like protein [Maconellicoccus
hirsutus]
Length = 135
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 90/133 (67%), Gaps = 5/133 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M ++K++K+LQ INYR+R +QDGR +G F AFD+HMNL+L +C+E+RK +
Sbjct: 1 MPVTKNNKLLQIINYRIRCILQDGRTFIGTFKAFDKHMNLILSECDEYRKY-----RTKG 55
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
RE++RTLG VLLRG+ V+++T EGPPPP+E+ + ++ GPG G AGRG+PA
Sbjct: 56 DAPPREEKRTLGFVLLRGDSVVTVTTEGPPPPDENLPRLPLPGSLPGPGTGHPAGRGIPA 115
Query: 121 APLVQAQPGLAGP 133
+ A PGL P
Sbjct: 116 PTMPMAYPGLGAP 128
>gi|344279453|ref|XP_003411502.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Loxodonta africana]
Length = 341
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/138 (57%), Positives = 98/138 (71%), Gaps = 5/138 (3%)
Query: 12 FINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTL 71
+ R +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+ ERE++R L
Sbjct: 113 YRRLHFRXILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSKQAEREEKRVL 168
Query: 72 GLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA-APLVQAQPGL 130
GLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA P+ QA GL
Sbjct: 169 GLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGL 228
Query: 131 AGPVRGVGGPAPGMMQPQ 148
AGPVRGVGGP+ +M PQ
Sbjct: 229 AGPVRGVGGPSQQVMTPQ 246
>gi|213405435|ref|XP_002173489.1| Sm snRNP core protein Smb1 [Schizosaccharomyces japonicus yFS275]
gi|212001536|gb|EEB07196.1| Sm snRNP core protein Smb1 [Schizosaccharomyces japonicus yFS275]
Length = 148
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEER 65
SSKM+ IN+ + VT +DGR G MAFD HMNLVL DC+EFR + K + +N
Sbjct: 3 SSKMVSLINHSLNVTTKDGRTFSGYLMAFDAHMNLVLSDCQEFRHIK--KRNASTSNSVF 60
Query: 66 EDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQ 125
E++R LGLV+LRGE ++S++V+GPPP + S + ++GPGI R AGRG+ P+ Q
Sbjct: 61 EEKRMLGLVILRGEFIVSLSVQGPPPMDPS----MRGGLLSGPGIARPAGRGM---PITQ 113
Query: 126 AQPGLAGPVRGVGGPAP 142
GL GPVRGVG AP
Sbjct: 114 LPAGLTGPVRGVGFAAP 130
>gi|409081623|gb|EKM81982.1| hypothetical protein AGABI1DRAFT_112159 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196857|gb|EKV46785.1| hypothetical protein AGABI2DRAFT_136942 [Agaricus bisporus var.
bisporus H97]
Length = 178
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 65/115 (56%), Positives = 81/115 (70%), Gaps = 2/115 (1%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
SK KML IN+R++VTI DGR L G+ +AFDRHMNLVL DCEEFR++ P K T
Sbjct: 6 SKGGKMLALINWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAP 65
Query: 64 EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGV 118
E+E +RTLGLV+LRGE V+S++VEGPPP + KA + GPG G AGRG+
Sbjct: 66 EQEMKRTLGLVILRGETVVSISVEGPPPVVDEDKKANNLP--GGPGRGMPAGRGM 118
>gi|302686860|ref|XP_003033110.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune H4-8]
gi|300106804|gb|EFI98207.1| hypothetical protein SCHCODRAFT_67091 [Schizophyllum commune H4-8]
Length = 179
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/116 (56%), Positives = 83/116 (71%), Gaps = 5/116 (4%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
SK KML IN+R++VTI DGRQLVG+ +AFDRHMNLVL +CEEFR++ P K T
Sbjct: 6 SKGGKMLALINWRIKVTINDGRQLVGQMLAFDRHMNLVLAECEEFRRIRPKKKPGQETQP 65
Query: 64 EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAV-AGPGIGRAAGRGV 118
E+E +R LGLV+LRGE V+S++VE PPP +E K SA+ GPG G AGRG+
Sbjct: 66 EQEVKRALGLVILRGETVVSLSVESPPPVQEDDKK----SALPVGPGRGMPAGRGM 117
>gi|393243225|gb|EJD50740.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 183
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 87/125 (69%), Gaps = 8/125 (6%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
SK KML IN+R++VT+ DGR LVG +AFDRHMNLVL DCEEFR++ P K K ++E
Sbjct: 6 SKGGKMLALINWRLKVTLNDGRALVGHMLAFDRHMNLVLADCEEFRRVRPKK-KAGESSE 64
Query: 64 ----EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVP 119
E+E +RTLGLV+LRGE V+S++VEGPPP ++ K + GPG G AGRG+
Sbjct: 65 GPAPEQEIKRTLGLVILRGETVVSLSVEGPPPVQDEEKK---NAMFPGPGRGMPAGRGIG 121
Query: 120 AAPLV 124
A +V
Sbjct: 122 LAGMV 126
>gi|351713280|gb|EHB16199.1| Small nuclear ribonucleoprotein-associated protein B'
[Heterocephalus glaber]
Length = 195
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/149 (55%), Positives = 102/149 (68%), Gaps = 8/149 (5%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M + KSSKMLQ +YRMR +QDG +G F AFD+HMNL+L DC+E+RK+ P KN
Sbjct: 1 MMVGKSSKMLQHTDYRMRCILQDGWIFIGTFKAFDKHMNLILCDCDEYRKIKP----KNF 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRG+ ++ M VEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGKNLVLMIVEGPPPKDIGIARVPVAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA AGPV GVGGP+ +M Q
Sbjct: 117 GVPMPQAP---AGPVHGVGGPSQQVMTSQ 142
>gi|432107554|gb|ELK32804.1| Small nuclear ribonucleoprotein-associated protein N [Myotis
davidii]
Length = 220
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 57/92 (61%), Positives = 71/92 (77%), Gaps = 4/92 (4%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 33 TVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNAK 88
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 89 QPEREEKRVLGLVLLRGENLVSMTVEGPPPKD 120
>gi|19115063|ref|NP_594151.1| Sm snRNP core protein Smb1 [Schizosaccharomyces pombe 972h-]
gi|1723236|sp|Q10163.1|RSMB_SCHPO RecName: Full=Small nuclear ribonucleoprotein-associated protein B;
Short=snRNP-B; AltName: Full=Sm protein B; Short=Sm-B;
Short=SmB
gi|1177355|emb|CAA93231.1| Sm snRNP core protein Smb1 [Schizosaccharomyces pombe]
Length = 147
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 95/139 (68%), Gaps = 14/139 (10%)
Query: 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN--TNE 63
++KM+ +N+ + VT +DGR VG+ +AFD MNLVL DC+E+R + KK N +N
Sbjct: 3 TTKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHI-----KKQNVPSNS 57
Query: 64 EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPL 123
E++R LGLV+LRGE ++S++V+GPPP + S + S ++GPG+ R AGRG+ PL
Sbjct: 58 VYEEKRMLGLVILRGEFIVSLSVQGPPPMDPS----MRGSLLSGPGVARPAGRGI---PL 110
Query: 124 VQAQPGLAGPVRGVGGPAP 142
QA GLAGPVRGVG AP
Sbjct: 111 GQAPVGLAGPVRGVGYTAP 129
>gi|312374503|gb|EFR22046.1| hypothetical protein AND_15819 [Anopheles darlingi]
Length = 196
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/192 (51%), Positives = 121/192 (63%), Gaps = 10/192 (5%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
M+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ P KNN ERE++
Sbjct: 1 MIQLLNYRVRIVLQDSRIFIGTFKAFDKHMNLILGDCEEFRKIKP----KNNKLPEREEK 56
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQAQP 128
R LG VLLRG ++S+TVEGPPPPEE + GPG+GR GRG+PA +
Sbjct: 57 RVLGFVLLRGGNIVSLTVEGPPPPEEGLPRVPIPGGAGGPGMGRVTGRGMPAN-IAGVPA 115
Query: 129 GLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPP-MTYPATSGGPPVIRPPGQMPPPVYPG 187
GL GPVRGVGGP+ M P + R Q+SAPP M G PP + P M P G
Sbjct: 116 GLQGPVRGVGGPSQQHMAP-VGRG--QQVSAPPQMRPMIPGGPPPGLMPAAGMNPMAGLG 172
Query: 188 QG-PPMARGPPP 198
+G PP RGPPP
Sbjct: 173 RGAPPAMRGPPP 184
>gi|412989962|emb|CCO20604.1| predicted protein [Bathycoccus prasinos]
Length = 167
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 86/126 (68%), Gaps = 9/126 (7%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
+++++++KML FIN+R+R TI DGRQ+VG+F+AFDRHMNLVL D EEFRKLP K
Sbjct: 2 VAVNRTTKMLSFINHRIRATIVDGRQIVGRFVAFDRHMNLVLADSEEFRKLPKKKKTNTT 61
Query: 61 TNEERED------RRTLGLVLLRGEEVISMTVEGPP---PPEESRAKAVSASAVAGPGIG 111
T EE ++ RR LG VLLRGEEV+S+ VEGPP S+ + A + G G+
Sbjct: 62 TKEEDDEDAGGDVRRVLGFVLLRGEEVVSVAVEGPPIRVKKISSQKQGADAGGIPGGGVA 121
Query: 112 RAAGRG 117
R AGRG
Sbjct: 122 RPAGRG 127
>gi|290992103|ref|XP_002678674.1| predicted protein [Naegleria gruberi]
gi|284092287|gb|EFC45930.1| predicted protein [Naegleria gruberi]
Length = 83
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/87 (65%), Positives = 72/87 (82%), Gaps = 4/87 (4%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
K+SK+ QF+NYRMR+T+QDGRQ+VGKFMAFD+ MNLV+ DCEEFRK+ P KG K EE
Sbjct: 1 KNSKLYQFLNYRMRITLQDGRQIVGKFMAFDKFMNLVVADCEEFRKIIP-KGSK---GEE 56
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPP 91
E +R+LG +L+RGE +IS+ VEGPPP
Sbjct: 57 VEQKRSLGFLLIRGENIISIVVEGPPP 83
>gi|134545|sp|P17136.1|RSMB_RAT RecName: Full=Small nuclear ribonucleoprotein-associated protein B;
Short=snRNP-B; Short=snRPB; AltName: Full=SM11; AltName:
Full=Sm protein B; Short=Sm-B; Short=SmB
gi|207010|gb|AAA42159.1| small nuclear ribonucleoparticle-associated protein, partial
[Rattus norvegicus]
Length = 214
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/131 (59%), Positives = 97/131 (74%), Gaps = 5/131 (3%)
Query: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRG 78
++Q+GR +G F AFD+HMNL+L DC+EFRK+ P KN+ ERE++R LGLVLLRG
Sbjct: 2 CSLQNGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSKQAEREEKRVLGLVLLRG 57
Query: 79 EEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA-APLVQAQPGLAGPVRGV 137
E ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA P+ QA GLAGPVRGV
Sbjct: 58 ENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGV 117
Query: 138 GGPAPGMMQPQ 148
GGP+ +M PQ
Sbjct: 118 GGPSQQVMTPQ 128
>gi|170040621|ref|XP_001848091.1| small nuclear ribonucleoprotein-associated protein B [Culex
quinquefasciatus]
gi|167864230|gb|EDS27613.1| small nuclear ribonucleoprotein-associated protein B [Culex
quinquefasciatus]
Length = 196
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 80/150 (53%), Positives = 100/150 (66%), Gaps = 10/150 (6%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
M+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ P KN ERE++
Sbjct: 1 MIQLLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP----KNTKLPEREEK 56
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQAQP 128
R LG VLLRG ++S+TVEGPPPPEE + GPG+GR AGRG+P A +
Sbjct: 57 RVLGFVLLRGGNIVSLTVEGPPPPEEGLPRVPIPGGAPGPGMGRVAGRGMP-ANIAGVPA 115
Query: 129 GLAGPVRGVGGPAPGMMQP-----QISRPP 153
GL GPVRGVGGP+ M P Q+S PP
Sbjct: 116 GLQGPVRGVGGPSQQHMAPVGRGGQVSAPP 145
>gi|169849793|ref|XP_001831595.1| SMB [Coprinopsis cinerea okayama7#130]
gi|116507233|gb|EAU90128.1| SMB [Coprinopsis cinerea okayama7#130]
Length = 168
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/125 (53%), Positives = 87/125 (69%), Gaps = 4/125 (3%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
ML IN+R++VTIQDGR L G+ +AFDRHMNLVL DCEEFR++ P K E+E +
Sbjct: 1 MLSLINWRLKVTIQDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEEVAPEQELK 60
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQAQP 128
RTLGLV+LRGE V+S++VEGPPP ++ +K + GPG G AGRG+ P + A P
Sbjct: 61 RTLGLVILRGEAVVSISVEGPPPVQDDDSK---TTLPLGPGRGMPAGRGMGMVPPIGA-P 116
Query: 129 GLAGP 133
G+A P
Sbjct: 117 GVARP 121
>gi|332639433|pdb|2Y9A|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639440|pdb|2Y9A|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639447|pdb|2Y9A|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639457|pdb|2Y9B|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639464|pdb|2Y9B|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639471|pdb|2Y9B|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639481|pdb|2Y9C|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639488|pdb|2Y9C|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639495|pdb|2Y9C|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639505|pdb|2Y9D|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639512|pdb|2Y9D|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639519|pdb|2Y9D|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
Length = 95
Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats.
Identities = 59/98 (60%), Positives = 75/98 (76%), Gaps = 4/98 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAK 98
ERE++R LGLVLLRGE ++SMTVEGPPP + A+
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIAR 94
>gi|315045376|ref|XP_003172063.1| SMB [Arthroderma gypseum CBS 118893]
gi|311342449|gb|EFR01652.1| SMB [Arthroderma gypseum CBS 118893]
Length = 207
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 87/136 (63%), Gaps = 17/136 (12%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK--- 57
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ GK
Sbjct: 1 MASNKQGKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQ 60
Query: 58 ----KNNTNE--EREDRRTLGLVLLRGEEVISMTVEGPPPPE--------ESRAKAVSAS 103
++T + E E++RTLGL ++RG V+S +V+GPPP E + VSA+
Sbjct: 61 AAPGSSSTTQLVEAEEKRTLGLTIVRGTHVVSCSVDGPPPAEPAARLGTTAAGLAGVSAT 120
Query: 104 AVAGPGIGRAAGRGVP 119
AGPGI + AGRG+P
Sbjct: 121 LAAGPGISKPAGRGLP 136
>gi|148298654|ref|NP_001091757.1| small nuclear ribonucleoprotein polypeptide [Bombyx mori]
gi|87248407|gb|ABD36256.1| small nuclear ribonucleoprotein polypeptide [Bombyx mori]
Length = 187
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 104/161 (64%), Gaps = 11/161 (6%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KM Q INYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ KN+
Sbjct: 1 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKS----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
+RE++RTLG VLLRGE ++S+T+EGPPPPEE + A+ GPG RAAGRG
Sbjct: 57 KTADREEKRTLGFVLLRGENIVSLTIEGPPPPEEGLPRVPLPGAMGGPGSARAAGRGTGP 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPP 161
+ G A RGVGGP+ M P QLSAPP
Sbjct: 117 GGVPPGLQGPA---RGVGGPSQQHMAP----GNRGQLSAPP 150
>gi|326482088|gb|EGE06098.1| hypothetical protein TEQG_05211 [Trichophyton equinum CBS 127.97]
Length = 240
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 86/136 (63%), Gaps = 17/136 (12%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK--- 57
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ GK
Sbjct: 1 MASNKQGKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQ 60
Query: 58 ----KNNTN--EEREDRRTLGLVLLRGEEVISMTVEGPPPPE--------ESRAKAVSAS 103
++T E E++RTLGL ++RG V+S +V+GPPP E + VSA+
Sbjct: 61 AAPGSSSTTPLVEAEEKRTLGLTIVRGTHVVSCSVDGPPPAEPAARLGTTAAGLAGVSAT 120
Query: 104 AVAGPGIGRAAGRGVP 119
AGPGI + AGRG+P
Sbjct: 121 LAAGPGISKPAGRGLP 136
>gi|327304287|ref|XP_003236835.1| small nuclear ribonucleoprotein SmB [Trichophyton rubrum CBS
118892]
gi|326459833|gb|EGD85286.1| small nuclear ribonucleoprotein SmB [Trichophyton rubrum CBS
118892]
Length = 226
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 87/136 (63%), Gaps = 17/136 (12%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK--- 57
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ GK
Sbjct: 1 MASNKQGKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQ 60
Query: 58 ----KNNTNE--EREDRRTLGLVLLRGEEVISMTVEGPPPPE--------ESRAKAVSAS 103
++T + E E++RTLGL ++RG V+S +V+GPPP E + VSA+
Sbjct: 61 AAPGSSSTAQLVEAEEKRTLGLTIVRGTHVVSCSVDGPPPAEPAARLGTTAAGLAGVSAT 120
Query: 104 AVAGPGIGRAAGRGVP 119
AGPGI + AGRG+P
Sbjct: 121 LAAGPGISKPAGRGLP 136
>gi|308505924|ref|XP_003115145.1| CRE-SNR-2 protein [Caenorhabditis remanei]
gi|308259327|gb|EFP03280.1| CRE-SNR-2 protein [Caenorhabditis remanei]
Length = 178
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 101/173 (58%), Gaps = 20/173 (11%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK-- 58
M++SK++KM+ +NYRM++ +QDGR VG F AFD+HMN++L +CEE R++ P GKK
Sbjct: 1 MTISKNNKMMAHLNYRMKIILQDGRTFVGFFKAFDKHMNILLAECEEHRQIKPKAGKKVC 60
Query: 59 -------------NNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAV 105
+ + E++R LGLVLLRGE ++SMTV+GPPP ++ + A
Sbjct: 61 CYFFIVQGSILIIDCFQADGEEKRILGLVLLRGEHIVSMTVDGPPPRDDDSVRLAKAGGA 120
Query: 106 AGPGIGRAAGRGVPA-----APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPP 153
GPG + GRG+PA GL+G +RG GGP MQP PP
Sbjct: 121 GGPGQAKPGGRGMPAMPGMQGMPPGPPGGLSGAMRGHGGPGMASMQPGYGAPP 173
>gi|296807120|ref|XP_002844176.1| SMB [Arthroderma otae CBS 113480]
gi|238843659|gb|EEQ33321.1| SMB [Arthroderma otae CBS 113480]
Length = 226
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 83/136 (61%), Gaps = 17/136 (12%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ GK
Sbjct: 1 MASNKQGKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQ 60
Query: 61 TNE---------EREDRRTLGLVLLRGEEVISMTVEGPPPPE--------ESRAKAVSAS 103
E E++RTLGL ++RG V+S +V+GPPP E + VSA+
Sbjct: 61 AAAGSSSTPQLVEAEEKRTLGLTIVRGTHVVSCSVDGPPPAEPAARLGTTAAGIAGVSAT 120
Query: 104 AVAGPGIGRAAGRGVP 119
AGPGI + AGRG+P
Sbjct: 121 LAAGPGISKPAGRGLP 136
>gi|6730226|pdb|1D3B|B Chain B, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730228|pdb|1D3B|D Chain D, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730230|pdb|1D3B|F Chain F, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730232|pdb|1D3B|H Chain H, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730234|pdb|1D3B|J Chain J, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730236|pdb|1D3B|L Chain L, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
Length = 91
Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats.
Identities = 58/93 (62%), Positives = 73/93 (78%), Gaps = 4/93 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
ERE++R LGLVLLRGE ++SMTVEGPPP +
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89
>gi|219117519|ref|XP_002179554.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409445|gb|EEC49377.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 165
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 80/116 (68%), Gaps = 7/116 (6%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
K SK+L+++ +R+RVT+ DGR +VG F+AFD+H+NLVL + EEFR L G EE
Sbjct: 5 KGSKLLRYVEHRLRVTLHDGRSIVGTFLAFDKHLNLVLSEAEEFRTLKSKGGAA--LLEE 62
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
R ++R+LGLVL+RGE V+S+ VEGPPPP + GPG+ R AGRGVP+
Sbjct: 63 RTEKRSLGLVLIRGENVVSLAVEGPPPPS-----TMGKLTPGGPGMARGAGRGVPS 113
>gi|326472667|gb|EGD96676.1| small nuclear ribonucleoprotein-associated protein B [Trichophyton
tonsurans CBS 112818]
Length = 187
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 86/136 (63%), Gaps = 17/136 (12%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK--- 57
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ GK
Sbjct: 1 MASNKQGKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQ 60
Query: 58 ----KNNTN--EEREDRRTLGLVLLRGEEVISMTVEGPPPPE--------ESRAKAVSAS 103
++T E E++RTLGL ++RG V+S +V+GPPP E + VSA+
Sbjct: 61 AAPGSSSTTPLVEAEEKRTLGLTIVRGTHVVSCSVDGPPPAEPAARLGTTAAGLAGVSAT 120
Query: 104 AVAGPGIGRAAGRGVP 119
AGPGI + AGRG+P
Sbjct: 121 LAAGPGISKPAGRGLP 136
>gi|323450318|gb|EGB06200.1| hypothetical protein AURANDRAFT_16819, partial [Aureococcus
anophagefferens]
Length = 81
Score = 122 bits (307), Expect = 1e-25, Method: Composition-based stats.
Identities = 56/82 (68%), Positives = 67/82 (81%), Gaps = 1/82 (1%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
ML +INYRMRVTI D R LVG F+AFD+HMNLVL DCEE+RK+ KG +EERE++
Sbjct: 1 MLSYINYRMRVTIADSRTLVGTFLAFDKHMNLVLADCEEYRKIKAKKGTV-GISEEREEK 59
Query: 69 RTLGLVLLRGEEVISMTVEGPP 90
RTLGLVLLRGE V+S++VEGPP
Sbjct: 60 RTLGLVLLRGEMVVSLSVEGPP 81
>gi|351700863|gb|EHB03782.1| Small nuclear ribonucleoprotein-associated protein B'
[Heterocephalus glaber]
Length = 126
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 73/99 (73%), Gaps = 4/99 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRM+ +QDG+ +G F AFD+HMNL+L DC+EFRK+ P KN
Sbjct: 1 MTVGKSSKMLQHIDYRMQCILQDGQIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNA 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKA 99
ERE++R GLVLLRGE ++SMTVEGPPP + A+
Sbjct: 57 KQPEREEKRVWGLVLLRGENLVSMTVEGPPPKDTGIARV 95
>gi|452824595|gb|EME31597.1| small nuclear ribonucleoprotein B and B' [Galdieria sulphuraria]
Length = 214
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 74/96 (77%), Gaps = 9/96 (9%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ ++SK+LQ+INYR+RV++ D R +VG+ +AFD+H+NLVL DCEEFRKL
Sbjct: 1 MAVPRNSKLLQYINYRLRVSLDDQRVIVGQLLAFDKHLNLVLNDCEEFRKLK-------- 52
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESR 96
+++E++R LGLVLLRGE VI+MTVE PPP + +R
Sbjct: 53 -KQDKEEKRALGLVLLRGESVITMTVESPPPEQTTR 87
>gi|397641777|gb|EJK74845.1| hypothetical protein THAOC_03454 [Thalassiosira oceanica]
Length = 1567
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 80/113 (70%), Gaps = 9/113 (7%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
K SK+L+++ +R+R+++ DGR +VG F+AFD+H+NLVL D EEFR L K + EE
Sbjct: 1261 KGSKLLRYVEHRLRISLADGRTIVGTFLAFDKHLNLVLVDAEEFRTL---KSSRAAILEE 1317
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRG 117
R ++R+LGL++LRGE V+SM VEGPPPP+ V A + GPG+ R GRG
Sbjct: 1318 RVEKRSLGLIILRGENVVSMAVEGPPPPK------VGAQSKGGPGMARGVGRG 1364
>gi|406866267|gb|EKD19307.1| small nuclear ribonucleoprotein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 191
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 85/146 (58%), Gaps = 20/146 (13%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
+K KM INYRMRVT+ DGRQ+VG+ +AFD+HMNLVL D EEFR++ K
Sbjct: 3 NKQGKMAGLINYRMRVTMNDGRQMVGQMLAFDKHMNLVLADTEEFRRVKRKANKSAAPGA 62
Query: 64 ------EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSA------SAVAGPGIG 111
E E++RTLGL ++RG +IS++VE PPP + S SA + AG GI
Sbjct: 63 SAAAVVENEEKRTLGLTIVRGAHIISLSVESPPPADASARLGASAPGGITTTLAAGAGIA 122
Query: 112 RAAGRGVPAAPLVQAQPGLAGPVRGV 137
R AGRG P GLAGP GV
Sbjct: 123 RPAGRGAPV--------GLAGPAAGV 140
>gi|341902435|gb|EGT58370.1| hypothetical protein CAEBREN_14673 [Caenorhabditis brenneri]
Length = 159
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 92/151 (60%), Gaps = 9/151 (5%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++SK++KM+ +NYRM++ +QDGR VG F AFD+HMN++L +CEE R++ P GKK +
Sbjct: 1 MTISKNNKMMAHLNYRMKIILQDGRTFVGFFKAFDKHMNILLAECEEHRQIKPKAGKKAD 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAV-----AGPGIGRAAG 115
E++R LGLVLLRGE ++SMTV+GPPP ++ + A V A PG
Sbjct: 61 G----EEKRILGLVLLRGEHIVSMTVDGPPPRDDDSVRLAKAGGVGGVGQAKPGGRGMPA 116
Query: 116 RGVPAAPLVQAQPGLAGPVRGVGGPAPGMMQ 146
A GL+G +RG GGP MQ
Sbjct: 117 MPGMPGMPPGAPGGLSGAMRGHGGPGMAAMQ 147
>gi|393222057|gb|EJD07541.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 183
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 82/119 (68%), Gaps = 9/119 (7%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
SK KML IN+R+++T+ DGR L G+ +AFDRHMNLVL DCEEFR++ + KK E
Sbjct: 6 SKGGKMLSLINWRLKITLNDGRALTGQMLAFDRHMNLVLADCEEFRRV---RAKKKAGEE 62
Query: 64 ----EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGV 118
E+E +R+LGLV+LRGE V+S++VEGPPP + K A + GPG G AGRG+
Sbjct: 63 GPAPEQEIKRSLGLVILRGESVVSLSVEGPPPVVDEDKKV--AGILPGPGRGMPAGRGM 119
>gi|240281222|gb|EER44725.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
gi|325092282|gb|EGC45592.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 228
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/135 (46%), Positives = 86/135 (63%), Gaps = 16/135 (11%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMN+VL D EEFR++ K
Sbjct: 1 MAANKQGKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNIVLADTEEFRRVKRKSTKSTQ 60
Query: 61 -------TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE-ESR--------AKAVSASA 104
T E E++RTLGL +LRG +V+S +V+GPPP + +R + A +A+
Sbjct: 61 APGSNTPTLVEAEEKRTLGLTILRGTQVVSCSVDGPPPADPAARLGTTVPGASGASAATL 120
Query: 105 VAGPGIGRAAGRGVP 119
AGPGI R AGRG+P
Sbjct: 121 AAGPGISRPAGRGLP 135
>gi|449295488|gb|EMC91510.1| hypothetical protein BAUCODRAFT_330833 [Baudoinia compniacensis
UAMH 10762]
Length = 175
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 89/149 (59%), Gaps = 22/149 (14%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL------PPAKGK 57
+K KM F+NYRMR T+ DGRQLVG+ +AFD+HMNLVL DC+EFRK+ A G
Sbjct: 5 NKQGKMQGFVNYRMRATLNDGRQLVGQMLAFDKHMNLVLADCDEFRKVRRKTKGAGAPGS 64
Query: 58 KNNTNE-EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVS-------ASAVAGPG 109
T E E++R+LGL ++RG V+S +VEGPPP + + S A+ AGPG
Sbjct: 65 SGATQTVETEEKRSLGLAIVRGATVVSCSVEGPPPSDPAARLGTSAPGGVAPATMQAGPG 124
Query: 110 IGRAAGRGVPAAPLVQAQPGLAGPVRGVG 138
I R AGRG A GL GP GVG
Sbjct: 125 ISRPAGRG--------AGIGLQGPAAGVG 145
>gi|392565532|gb|EIW58709.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 178
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 83/121 (68%), Gaps = 6/121 (4%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL-PPAKGKKNNTN 62
SK KML IN+R++VTI DGR VG+ +AFDRHMNLVL +CEEFR++ P K +
Sbjct: 6 SKGGKMLSLINWRLKVTINDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKAGETEAG 65
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPP-PEESRAKAVSASAVAGPGIGRAAGRGVPAA 121
+E +RTLGLV+LRGE V+S++VEGPPP +E + A+ GPG G AGRG+P
Sbjct: 66 PMQEMKRTLGLVILRGETVVSLSVEGPPPVTDEDKKNAMP----FGPGRGAPAGRGMPMM 121
Query: 122 P 122
P
Sbjct: 122 P 122
>gi|392589852|gb|EIW79182.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 178
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 85/122 (69%), Gaps = 8/122 (6%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
SK KML IN+R++VTI DGR +G+ +AFDRHMNLV+ +CEEFR++ P K K T
Sbjct: 6 SKGGKMLGLINWRLKVTINDGRAFIGQMLAFDRHMNLVIAECEEFRRVRPKK-KAGETET 64
Query: 64 --EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAV-AGPGIGRAAGRGVPA 120
E+E +RTLGLV+LRGE V+S++VEGPPP + K +A+ AGPG G AGRG+
Sbjct: 65 PPEQEMKRTLGLVILRGETVVSISVEGPPPVVDDDKK----NALPAGPGRGMPAGRGMGM 120
Query: 121 AP 122
P
Sbjct: 121 MP 122
>gi|378725358|gb|EHY51817.1| small nuclear ribonucleoprotein B and B' [Exophiala dermatitidis
NIH/UT8656]
Length = 227
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 83/130 (63%), Gaps = 13/130 (10%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
+K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFRK+ + K +
Sbjct: 3 NKQGKMQHLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRKVKRKQNKPSAPAA 62
Query: 64 -------EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSA-----SAV-AGPGI 110
E E++RTLGLV+LRG ++S +VEGPPP + S SA SA+ AG GI
Sbjct: 63 PGSAALVETEEKRTLGLVILRGTNIVSCSVEGPPPSDPSARLGTSAPGGAPSALQAGTGI 122
Query: 111 GRAAGRGVPA 120
R AGRG+P
Sbjct: 123 ARPAGRGLPV 132
>gi|443924956|gb|ELU43898.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 183
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 83/116 (71%), Gaps = 6/116 (5%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
+K KML +N+R+++T+ DGR L G+ +AFD+HMNLVL DCEEFR++ K +
Sbjct: 7 TKGGKMLSLVNWRLKITLNDGRALTGQMLAFDKHMNLVLADCEEFRRVKSKKSDQGGV-- 64
Query: 64 EREDRRTLGLVLLRGEEVISMTVEGPPPP-EESRAKAVSASAVAGPGIGRAAGRGV 118
E+E +RTLGL++LRGE V+S++VEGPPP +E + K ++ AGPG G AGRG+
Sbjct: 65 EQELKRTLGLIILRGETVVSISVEGPPPAGDEDKNK---STLPAGPGRGMPAGRGI 117
>gi|425777864|gb|EKV16020.1| Small nuclear ribonucleoprotein-associated protein B [Penicillium
digitatum PHI26]
gi|425782633|gb|EKV20532.1| Small nuclear ribonucleoprotein-associated protein B [Penicillium
digitatum Pd1]
Length = 211
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 9/123 (7%)
Query: 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL----PPAKGKKNNT 61
S KM INYRMRVT+ DGRQ+ G +AFD+HMNLVL D EEFR++ PA G N
Sbjct: 3 SHKMQNLINYRMRVTLNDGRQMTGSMLAFDKHMNLVLADTEEFRRIKRKSKPAAGPTNAP 62
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAV-----SASAVAGPGIGRAAGR 116
E E++R+LGL ++RG +V+S +VEGPPP + S +A+ AGPGI + AGR
Sbjct: 63 LVEAEEKRSLGLTIVRGTQVVSCSVEGPPPADPSARLGTAGPGAAATLAAGPGISKPAGR 122
Query: 117 GVP 119
G+P
Sbjct: 123 GLP 125
>gi|320587516|gb|EFW99996.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 203
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/154 (45%), Positives = 95/154 (61%), Gaps = 24/154 (15%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL-------PP 53
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++
Sbjct: 1 MATNKQGKM---INYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRIRRRQAKPAA 57
Query: 54 AKGKKNNTNE-EREDRRTLGLVLLRGEEVISMTVEGPPPPEESR------AKAVSASAVA 106
A G + T E+E++RTLGL ++RG +++S++VE PPP + S V++ A
Sbjct: 58 ASGTASTTQTIEQEEKRTLGLTIVRGAQIVSLSVESPPPADPSARLGKAPTGGVASGLTA 117
Query: 107 GPGIGRAAGRGVPAAPLVQAQPGLAGPVRGVGGP 140
GPG+ R AGRG A P+ LAGP GVG P
Sbjct: 118 GPGVARPAGRG--AVPIS-----LAGPAPGVGVP 144
>gi|389739317|gb|EIM80511.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 179
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 82/118 (69%), Gaps = 10/118 (8%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL-PPAKGKKNNTN 62
SK KML IN+R++VTI DGR L G+ +AFDRHMNLVL +CEEFR++ P K +
Sbjct: 6 SKGGKMLSLINWRLKVTINDGRALTGQMLAFDRHMNLVLAECEEFRRVRPKKKAGEAEAG 65
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
E+E +RTLGLV+LRGE V+S++VEGPPP ++ K +S AGP GRG+PA
Sbjct: 66 PEQEMKRTLGLVILRGETVVSISVEGPPPVQDDDKK---SSLPAGP------GRGMPA 114
>gi|255936245|ref|XP_002559149.1| Pc13g07180 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583769|emb|CAP91787.1| Pc13g07180 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 212
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 9/123 (7%)
Query: 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL----PPAKGKKNNT 61
S KM INYRMRVT+ DGRQ+ G +AFD+HMNLVL D EEFR++ PA G N
Sbjct: 3 SHKMQNLINYRMRVTLNDGRQMTGSMLAFDKHMNLVLADTEEFRRIKRKSKPAAGPTNAP 62
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAV-----SASAVAGPGIGRAAGR 116
E E++R+LGL ++RG +V+S +VEGPPP + S +A+ AGPGI + AGR
Sbjct: 63 LVEAEEKRSLGLTIVRGTQVVSCSVEGPPPADPSARLGTAGPGAAATLAAGPGISKPAGR 122
Query: 117 GVP 119
G+P
Sbjct: 123 GLP 125
>gi|347826641|emb|CCD42338.1| hypothetical protein [Botryotinia fuckeliana]
Length = 188
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 92/159 (57%), Gaps = 30/159 (18%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
+K KM INYRMRVT+ DGRQ+VG+ +AFD+HMNLVL D EEFR++ K
Sbjct: 3 NKQGKMAGLINYRMRVTMNDGRQMVGQMLAFDKHMNLVLADTEEFRRVKRKAPKTTAAPG 62
Query: 64 ---------EREDRRTLGLVLLRGEEVISMTVEGPPPPE-ESRAKAV-------SASAVA 106
E E++RTLGL ++RG VIS++VE PPP + SR A SA+ A
Sbjct: 63 ASSAAPPLVETEEKRTLGLTIIRGTHVISLSVESPPPADPSSRLGASVPGGAVPSAAMAA 122
Query: 107 GPGIGR-AAGRGVPAAPLVQAQPGLAGPVRGVGGPAPGM 144
G GI R AAGRG GLAGP G+GG PGM
Sbjct: 123 GTGIARPAAGRG-----------GLAGPAVGIGG-FPGM 149
>gi|453081814|gb|EMF09862.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 207
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/145 (47%), Positives = 88/145 (60%), Gaps = 20/145 (13%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLP-PAK----- 55
S K KM FINYRMR T DGRQLVG+ +AFD+HMNLVL DCEEFRK+ AK
Sbjct: 3 SQQKQGKMQGFINYRMRATTNDGRQLVGQMLAFDKHMNLVLADCEEFRKVKRKAKQGGAP 62
Query: 56 -GKKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAA 114
+ E E++R+LGL ++RG ++S +V+GPPP + S +G++A
Sbjct: 63 GATTSGQTVETEEKRSLGLAIVRGANIVSCSVDGPPPADPS------------ARLGQSA 110
Query: 115 GRGVPAAPLVQAQPGLAGPV-RGVG 138
G PAA +VQA PGLA P RG G
Sbjct: 111 PGGGPAAGVVQAGPGLAKPAGRGAG 135
>gi|451848828|gb|EMD62133.1| hypothetical protein COCSADRAFT_183255 [Cochliobolus sativus
ND90Pr]
gi|451998649|gb|EMD91113.1| hypothetical protein COCHEDRAFT_1102896 [Cochliobolus
heterostrophus C5]
Length = 210
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 84/126 (66%), Gaps = 11/126 (8%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK----KN 59
++ KM INYRM+VT+QDGRQ+VG+ +AFD+HMNLVL D EEFR+ KGK
Sbjct: 6 NRQGKMQNLINYRMKVTLQDGRQMVGQMLAFDKHMNLVLADTEEFRR-TRRKGKAAPGAT 64
Query: 60 NTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE-ESRAKA-----VSASAVAGPGIGRA 113
E E+RR +GL ++RG VIS++V+GPPP + +R A +A+ AGPG+ R
Sbjct: 65 QQVTETEERRAIGLTIIRGAHVISLSVDGPPPADPAARLGANSGPSTTAALAAGPGVARP 124
Query: 114 AGRGVP 119
AGRG+P
Sbjct: 125 AGRGLP 130
>gi|388579060|gb|EIM19389.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 179
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 82/115 (71%), Gaps = 9/115 (7%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
K+S+ML INYR+RVT+ D RQLVG+ +AFDRHMNLVL D EFR+L KG + +
Sbjct: 7 KNSRMLTLINYRLRVTLNDTRQLVGQMLAFDRHMNLVLVDTIEFRRL---KGPSSQGDIP 63
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVP 119
+E +R LGL++LRGE +IS++VEGPPP +E + +GPG+G AGRG+P
Sbjct: 64 KEMKRALGLIVLRGETIISISVEGPPPVKEEDPIS------SGPGVGAPAGRGMP 112
>gi|223995851|ref|XP_002287599.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976715|gb|EED95042.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 113
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 9/114 (7%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN---- 60
K SK+L++I +R+RV++ DGR ++G F+AFD+H+NLVL D EEFR L + K N
Sbjct: 2 KGSKLLRYIEHRLRVSLSDGRTIIGTFLAFDKHLNLVLVDTEEFRTLRSSNSKSNGGAGR 61
Query: 61 --TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGR 112
EER+++R+LGL++LRGE V+S+ VEGPPPP + A V+A GPG+ R
Sbjct: 62 AAIVEERQEKRSLGLIILRGENVVSIAVEGPPPPGVNAAGRVNA---GGPGVAR 112
>gi|268561770|ref|XP_002646524.1| C. briggsae CBR-SNR-2 protein [Caenorhabditis briggsae]
Length = 160
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 74/98 (75%), Gaps = 4/98 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++SK++KM+ +NYRM++ +QDGR VG F AFD+HMN++L +CEE R++ P GKK +
Sbjct: 1 MTISKNNKMMAHLNYRMKIILQDGRTFVGFFKAFDKHMNILLAECEEHRQIKPKAGKKAD 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAK 98
E++R LGLVLLRGE ++SMTV+GPPP ++ +
Sbjct: 61 G----EEKRILGLVLLRGEHIVSMTVDGPPPRDDDSVR 94
>gi|170105048|ref|XP_001883737.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164641372|gb|EDR05633.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 103
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
ML IN+R++VTI DGR L G+ +AFDRHMNLVL DCEEFR++ P K T E+E +
Sbjct: 1 MLSLINWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMK 60
Query: 69 RTLGLVLLRGEEVISMTVEGPPP-PEESRAKAVSAS 103
RTLGLV+LRGE V+S++VEGPPP +E + AV S
Sbjct: 61 RTLGLVILRGETVVSLSVEGPPPIVDEDKKNAVRDS 96
>gi|310795842|gb|EFQ31303.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 227
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 84/133 (63%), Gaps = 14/133 (10%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL--------PPAK 55
+K KM +INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ P
Sbjct: 3 NKQGKMAGYINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKVRQNKPAAPGA 62
Query: 56 GKKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAGPG 109
G + E+E++RTLGL ++RG ++S++VE PP + +S ++++ AGPG
Sbjct: 63 GSSSGQTIEKEEKRTLGLTIVRGAHIVSLSVESEPPADPSARLGKSAPGGIASTLTAGPG 122
Query: 110 IGRAAGRGVPAAP 122
+ R AGRG AP
Sbjct: 123 VARPAGRGAAPAP 135
>gi|395331807|gb|EJF64187.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 181
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/116 (53%), Positives = 79/116 (68%), Gaps = 4/116 (3%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKNNTN 62
SK KML IN+R++VTI DGR VG+ +AFDRHMNLVL +CEEFR++ P K +
Sbjct: 6 SKGGKMLSLINWRLKVTINDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKPGETEAG 65
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGV 118
+E +RTLGLV+LRGE V+S++VEGPPP + K V GPG G AGRG+
Sbjct: 66 PMQEMKRTLGLVILRGETVVSLSVEGPPPVTDDDKKNVLP---FGPGRGAPAGRGM 118
>gi|242808554|ref|XP_002485189.1| small nuclear ribonucleoprotein SmB, putative [Talaromyces
stipitatus ATCC 10500]
gi|218715814|gb|EED15236.1| small nuclear ribonucleoprotein SmB, putative [Talaromyces
stipitatus ATCC 10500]
Length = 218
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 84/137 (61%), Gaps = 23/137 (16%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ K+
Sbjct: 1 MAANKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRV-----KRKA 55
Query: 61 TNE----------EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVS--------A 102
T + E E++RTLGL ++RG V+S +V+GPPP + S S A
Sbjct: 56 TKQAPGAAPAPLVEAEEKRTLGLTIVRGTNVVSCSVDGPPPADPSARLGTSVPNVPSGAA 115
Query: 103 SAVAGPGIGRAAGRGVP 119
+ AGPGI R AGRG+P
Sbjct: 116 TLSAGPGISRPAGRGLP 132
>gi|17509627|ref|NP_493348.1| Protein SNR-2 [Caenorhabditis elegans]
gi|29427664|sp|P91918.1|RSMB_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein-associated
protein B; Short=snRNP-B; AltName: Full=Sm protein B;
Short=Sm-B; Short=SmB
gi|3880616|emb|CAB07132.1| Protein SNR-2 [Caenorhabditis elegans]
Length = 160
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 74/98 (75%), Gaps = 4/98 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++SK++KM+ +NYRM++ +QDGR +G F AFD+HMN++L +CEE R++ P GKK +
Sbjct: 1 MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTD 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAK 98
E++R LGLVL+RGE ++SMTV+GPPP ++ +
Sbjct: 61 G----EEKRILGLVLVRGEHIVSMTVDGPPPRDDDSVR 94
>gi|303314917|ref|XP_003067467.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240107135|gb|EER25322.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320037834|gb|EFW19771.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 223
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 82/133 (61%), Gaps = 13/133 (9%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK--- 57
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFRK+ + K
Sbjct: 1 MATNKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRKVKRRQAKGPQ 60
Query: 58 -KNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSA---------SAVAG 107
N E E++RTLGL ++RG V+S +V+GPPP + S + + AG
Sbjct: 61 GGNGPLVETEEKRTLGLTIVRGTHVVSCSVDGPPPADPSARLGTTVPGVPGAAPPTLAAG 120
Query: 108 PGIGRAAGRGVPA 120
PGI + AGRG+P
Sbjct: 121 PGISKPAGRGLPV 133
>gi|156088647|ref|XP_001611730.1| Sm domain containing protein [Babesia bovis]
gi|154798984|gb|EDO08162.1| Sm domain containing protein [Babesia bovis]
Length = 159
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 93/154 (60%), Gaps = 20/154 (12%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
K+++M Q++ YR+RV I+DGR+ VG F+AFD+HMNLVL DCEEFR KGK + ++
Sbjct: 4 KNTRMQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFR---ITKGKGPD-KQK 59
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLV 124
E +RTLG ++LRGE ++S T E PP A + ++ GPG AGRG+P
Sbjct: 60 VELKRTLGFIMLRGENIVSFTAEAPP------AAPMVPYSMGGPGKATPAGRGIPIGMAR 113
Query: 125 QAQPG----------LAGPVRGVGGPAPGMMQPQ 148
AQPG L P+RG+ G AP M PQ
Sbjct: 114 PAQPGMPHLPQGAMPLQAPMRGLVGAAPMNMAPQ 147
>gi|367019576|ref|XP_003659073.1| hypothetical protein MYCTH_2295675 [Myceliophthora thermophila ATCC
42464]
gi|347006340|gb|AEO53828.1| hypothetical protein MYCTH_2295675 [Myceliophthora thermophila ATCC
42464]
Length = 214
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 85/130 (65%), Gaps = 14/130 (10%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK---- 57
+ +K KM +INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR+ + K
Sbjct: 3 ATNKQGKMAGYINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRTKRKQNKPAAP 62
Query: 58 -KNNTNE---EREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAG 107
++T E+E++RTLGL ++RG ++S++VE PPP + ++ ++++ AG
Sbjct: 63 GSSSTAAAIIEQEEKRTLGLTIVRGAHIVSLSVESPPPADPSARLGKTTGTGIASALTAG 122
Query: 108 PGIGRAAGRG 117
PG+ R AGRG
Sbjct: 123 PGVARPAGRG 132
>gi|119175495|ref|XP_001239965.1| hypothetical protein CIMG_09586 [Coccidioides immitis RS]
gi|392870163|gb|EAS27328.2| hypothetical protein CIMG_09586 [Coccidioides immitis RS]
Length = 223
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 82/133 (61%), Gaps = 13/133 (9%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK--- 57
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFRK+ + K
Sbjct: 1 MAANKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRKVKRRQAKGPQ 60
Query: 58 -KNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSA---------SAVAG 107
N E E++RTLGL ++RG V+S +V+GPPP + S + + AG
Sbjct: 61 GGNGPLVETEEKRTLGLTIVRGTHVVSCSVDGPPPADPSARLGTTVPGVPGAAPPTLAAG 120
Query: 108 PGIGRAAGRGVPA 120
PGI + AGRG+P
Sbjct: 121 PGISKPAGRGLPV 133
>gi|449547896|gb|EMD38863.1| hypothetical protein CERSUDRAFT_112585 [Ceriporiopsis subvermispora
B]
Length = 184
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/115 (54%), Positives = 80/115 (69%), Gaps = 6/115 (5%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKNNTN 62
SK KML IN+R++VTI DGR VG+ +AFDRHMNLVL +CEEFR++ P K +
Sbjct: 6 SKGGKMLSLINWRLKVTINDGRAFVGQMLAFDRHMNLVLAECEEFRRIRPKKKPGETEAG 65
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAV-AGPGIGRAAGR 116
+E +RTLGLV+LRGE V+S++VEGPPP + K SA+ AGPG G AGR
Sbjct: 66 PVQEMKRTLGLVILRGETVVSLSVEGPPPVVDDDKK----SALPAGPGRGMPAGR 116
>gi|297260889|ref|XP_002798382.1| PREDICTED: hypothetical protein LOC100428923 [Macaca mulatta]
Length = 295
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 92/154 (59%), Gaps = 5/154 (3%)
Query: 7 SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEERE 66
S++ Q I+ RM+ +Q+GR G F AFD+H+NL+L DC+E RK+ P KN E +
Sbjct: 120 SRLQQHIDSRMKCILQEGRIFFGAFKAFDKHVNLILCDCDELRKIKP----KNVKQPELK 175
Query: 67 DRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA-APLVQ 125
++ GLVLL GE ++S+TVEG P + A+ A A GPG+ RAAGRGV A + Q
Sbjct: 176 EKHFWGLVLLHGENLVSVTVEGLPHQDTGIARVPLAGAAGGPGVIRAAGRGVSAGVSISQ 235
Query: 126 AQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSA 159
A LAGPV V P+ +M PQ + PQ S
Sbjct: 236 APARLAGPVPEVEEPSQQVMTPQRTALLEPQHST 269
>gi|317146114|ref|XP_001821302.2| small nuclear ribonucleoprotein SmB [Aspergillus oryzae RIB40]
gi|391869223|gb|EIT78425.1| U1 snRNP component [Aspergillus oryzae 3.042]
Length = 219
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 83/132 (62%), Gaps = 12/132 (9%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL----PPAKG 56
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ PA G
Sbjct: 1 MAANKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAG 60
Query: 57 KKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSA--------SAVAGP 108
N E E++RTLGL ++RG V+S +V+GPPP + S S + AGP
Sbjct: 61 PANAPLVESEEKRTLGLTIVRGTHVVSCSVDGPPPADPSARLGTSVPGAAAAAATLAAGP 120
Query: 109 GIGRAAGRGVPA 120
GI + AGRG+P
Sbjct: 121 GISKPAGRGLPV 132
>gi|429862517|gb|ELA37163.1| small nuclear ribonucleoprotein [Colletotrichum gloeosporioides
Nara gc5]
Length = 208
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 87/133 (65%), Gaps = 15/133 (11%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK------ 57
+K KM +INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ + K
Sbjct: 3 NKQGKMAGYINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKIRQNKPAAPGS 62
Query: 58 -KNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAGPGI 110
++ E+E++RTLGL ++RG ++S++VE PP + +S +S++ AGPG+
Sbjct: 63 SGSSQTIEKEEKRTLGLTIVRGAHIVSLSVESEPPADPSARLGKSAPGGISSTLAAGPGV 122
Query: 111 GRAAGRGVPAAPL 123
R AGRG AAP+
Sbjct: 123 ARPAGRG--AAPV 133
>gi|399217788|emb|CCF74675.1| unnamed protein product [Babesia microti strain RI]
Length = 138
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 93/151 (61%), Gaps = 18/151 (11%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
M ++++M Q++NYR+RV I+D R+ +G F+AFDRHMNLVL DCEE+R + KK ++
Sbjct: 1 MGRNTRMQQWLNYRVRVIIKDNRRFIGVFIAFDRHMNLVLADCEEYRMI-----KKQPSD 55
Query: 63 EE-REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAA 121
+E E +RTLG VLLRGE V+S T E P + + + GPG AGRG+P
Sbjct: 56 KEPVEIKRTLGFVLLRGENVVSFTAESAPA-------STAPTGQTGPGKAVVAGRGMPYV 108
Query: 122 ----PLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ A GL P+RG+ GP P M P+
Sbjct: 109 MPVNPMAGAM-GLTAPLRGMVGPGPIQMTPR 138
>gi|331214923|ref|XP_003320142.1| hypothetical protein PGTG_01054 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309299132|gb|EFP75723.1| hypothetical protein PGTG_01054 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 197
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/121 (52%), Positives = 78/121 (64%), Gaps = 10/121 (8%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK-----KN 59
K SKML INYR+RVT+ D R L G+ +AFDRH+NLVL DCEEFR + K K +
Sbjct: 4 KQSKMLALINYRLRVTLNDSRTLTGQMLAFDRHLNLVLADCEEFRFIKQKKKKGGLAANS 63
Query: 60 NT--NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRG 117
N NEE E +R LGLV+LRGE ++S++VEGPPP + A + G G G AGRG
Sbjct: 64 NVEENEELEMKRALGLVILRGETIVSLSVEGPPP---AVADDKGPTIAPGRGTGVPAGRG 120
Query: 118 V 118
V
Sbjct: 121 V 121
>gi|402223834|gb|EJU03898.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 120
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/101 (54%), Positives = 74/101 (73%), Gaps = 5/101 (4%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL-PPAKGKKNN-- 60
+K KML INYR+RVT+ DGR+L G+ +AFDRHMNLVL DCEEFRK KG+ +
Sbjct: 6 AKGGKMLALINYRLRVTLNDGRELTGQMLAFDRHMNLVLADCEEFRKTRSKTKGESDGPA 65
Query: 61 -TNEEREDRRTLGLVLLRGEEVISMTVEGPPPP-EESRAKA 99
+ +E +RTLGLV+LRGE ++S++VEGPPP +E + K+
Sbjct: 66 AVSMAQEIKRTLGLVILRGETIVSISVEGPPPTSDEDKMKS 106
>gi|67531296|ref|XP_662080.1| hypothetical protein AN4476.2 [Aspergillus nidulans FGSC A4]
gi|40741629|gb|EAA60819.1| hypothetical protein AN4476.2 [Aspergillus nidulans FGSC A4]
Length = 395
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 83/127 (65%), Gaps = 8/127 (6%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLP-PAKGKKN 59
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ AK
Sbjct: 1 MAANKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKAKSAPG 60
Query: 60 NT-NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKA------VSASAVAGPGIGR 112
N E E++RTLGL ++RG V+S +V+GPPP + S +A+ AGPGI +
Sbjct: 61 NAPLVEAEEKRTLGLTIVRGTHVVSCSVDGPPPADPSARLGGGPSVPAAATLAAGPGISK 120
Query: 113 AAGRGVP 119
AGRG+P
Sbjct: 121 PAGRGLP 127
>gi|46108400|ref|XP_381258.1| hypothetical protein FG01082.1 [Gibberella zeae PH-1]
gi|408390024|gb|EKJ69440.1| hypothetical protein FPSE_10373 [Fusarium pseudograminearum CS3096]
Length = 210
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 90/144 (62%), Gaps = 20/144 (13%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK------ 57
+K KM +IN+RMRVT+ DGR + G+ +AFD+HMNLVL D EEFR++ + K
Sbjct: 3 NKQGKMAGYINWRMRVTLNDGRAMTGQMLAFDKHMNLVLADTEEFRRVKRKQNKPAAPGA 62
Query: 58 -KNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAGPGI 110
+ + E E++RTLGL ++RG +IS++VE PPP + +S +S++ AGPG+
Sbjct: 63 SGSGSLVESEEKRTLGLTIVRGAHIISLSVESPPPADPSARLGKSAPGGISSALAAGPGV 122
Query: 111 GRAAGRGVPAAPLVQAQPGLAGPV 134
R AGRG AAP P LAGP
Sbjct: 123 ARPAGRG--AAP-----PSLAGPA 139
>gi|154308568|ref|XP_001553620.1| hypothetical protein BC1G_08344 [Botryotinia fuckeliana B05.10]
Length = 240
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 92/157 (58%), Gaps = 30/157 (19%)
Query: 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE-- 63
++K + INYRMRVT+ DGRQ+VG+ +AFD+HMNLVL D EEFR++ K
Sbjct: 2 ANKQGKMINYRMRVTMNDGRQMVGQMLAFDKHMNLVLADTEEFRRVKRKAPKTTAAPGAS 61
Query: 64 -------EREDRRTLGLVLLRGEEVISMTVEGPPPPE-ESRAKAV-------SASAVAGP 108
E E++RTLGL ++RG VIS++VE PPP + SR A SA+ AG
Sbjct: 62 SAAPPLVETEEKRTLGLTIIRGTHVISLSVESPPPADPSSRLGASVPGGAVPSAAMAAGT 121
Query: 109 GIGR-AAGRGVPAAPLVQAQPGLAGPVRGVGGPAPGM 144
GI R AAGRG GLAGP G+GG PGM
Sbjct: 122 GIARPAAGRG-----------GLAGPAVGIGG-FPGM 146
>gi|398395353|ref|XP_003851135.1| hypothetical protein MYCGRDRAFT_74038 [Zymoseptoria tritici IPO323]
gi|339471014|gb|EGP86111.1| hypothetical protein MYCGRDRAFT_74038 [Zymoseptoria tritici IPO323]
Length = 207
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 79/130 (60%), Gaps = 13/130 (10%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M+ +K KM FINYRMR T+ DGRQLVG+ +AFD+HMNLVL DCEEFRK+
Sbjct: 1 MASNKQGKMQGFINYRMRATLNDGRQLVGQMLAFDKHMNLVLADCEEFRKVKRKAKGGAP 60
Query: 61 TNE------EREDRRTLGLVLLRGEEVISMTVEGPPPPE-------ESRAKAVSASAVAG 107
E E++R+LGL ++RG ++S +V+GPPP + + S S AG
Sbjct: 61 GASAGGQMVETEEKRSLGLAIVRGATIVSASVDGPPPADPAARLGQNAAGAGASPSVSAG 120
Query: 108 PGIGRAAGRG 117
PGI + AGRG
Sbjct: 121 PGIAKPAGRG 130
>gi|198419526|ref|XP_002123184.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptides
B and B1 isoform 1 [Ciona intestinalis]
Length = 167
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/142 (50%), Positives = 88/142 (61%), Gaps = 9/142 (6%)
Query: 7 SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEERE 66
SK+ INYRMR +QDGR +G F AFD+HMNL+L DC+EFR++ P KG +RE
Sbjct: 7 SKLNNHINYRMRCILQDGRVFIGTFKAFDKHMNLILVDCDEFRRVRPKKGA-----TDRE 61
Query: 67 DRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQA 126
++RTLGLVLLRGE ++SM+VEGPPP + V GP G+ G
Sbjct: 62 EKRTLGLVLLRGEHLVSMSVEGPPP--SGKGMGVPGGITRGP--GQGRAAGRGMGGPGGP 117
Query: 127 QPGLAGPVRGVGGPAPGMMQPQ 148
PGL GP+ GVGGP PG M PQ
Sbjct: 118 APGLHGPMHGVGGPPPGSMAPQ 139
>gi|389608761|dbj|BAM17992.1| small ribonucleoprotein particle protein SmB [Papilio xuthus]
Length = 188
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 69/89 (77%), Gaps = 4/89 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KM Q INYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ KN+
Sbjct: 1 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKS----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGP 89
+RE++RTLG VLLRGE ++S+T+EGP
Sbjct: 57 KTADREEKRTLGFVLLRGENIVSLTIEGP 85
>gi|428183707|gb|EKX52564.1| hypothetical protein GUITHDRAFT_48153, partial [Guillardia theta
CCMP2712]
Length = 75
Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/79 (67%), Positives = 65/79 (82%), Gaps = 4/79 (5%)
Query: 12 FINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTL 71
F +RMRVTI+DGRQLVGKFMAFD+HMN+VLGDC+EFR+L GK EERE++R+L
Sbjct: 1 FKFFRMRVTIEDGRQLVGKFMAFDKHMNIVLGDCDEFRRLSVKGGK----GEEREEKRSL 56
Query: 72 GLVLLRGEEVISMTVEGPP 90
GLV+LRGE V+S+TVE P
Sbjct: 57 GLVILRGESVVSLTVESKP 75
>gi|226292603|gb|EEH48023.1| hypothetical protein PADG_04107 [Paracoccidioides brasiliensis
Pb18]
Length = 227
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/139 (44%), Positives = 83/139 (59%), Gaps = 22/139 (15%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M+ K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ K K
Sbjct: 1 MASIKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRV---KRKSTK 57
Query: 61 TNE----------EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAV----- 105
T + E E++RTLGL ++RG V+S +V+GPPP + + + +V
Sbjct: 58 TTQAPGSSTPSLVEVEEKRTLGLTIVRGTHVVSCSVDGPPPADPAARLGTTVPSVSGAGP 117
Query: 106 ----AGPGIGRAAGRGVPA 120
AGPGI R AGRG+P
Sbjct: 118 TTLAAGPGISRPAGRGLPV 136
>gi|357622892|gb|EHJ74252.1| small nuclear ribonucleoprotein polypeptide [Danaus plexippus]
Length = 180
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/153 (51%), Positives = 96/153 (62%), Gaps = 11/153 (7%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
M Q INYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ KN +RE++
Sbjct: 1 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKS----KNTKTVDREEK 56
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQAQP 128
RTLG VLLRGE ++S+T+EGPPPPEE + A+ GP A + A P
Sbjct: 57 RTLGFVLLRGENIVSLTIEGPPPPEEGLPRVPLPGAMGGP---GVGRAAGRGAGIGGAPP 113
Query: 129 GLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPP 161
GL GPVRGVGGP+ M P P QLSAPP
Sbjct: 114 GLQGPVRGVGGPSQQHMAP----GPRGQLSAPP 142
>gi|302922530|ref|XP_003053485.1| hypothetical protein NECHADRAFT_98762 [Nectria haematococca mpVI
77-13-4]
gi|256734426|gb|EEU47772.1| hypothetical protein NECHADRAFT_98762 [Nectria haematococca mpVI
77-13-4]
Length = 209
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 82/129 (63%), Gaps = 16/129 (12%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL---------PPA 54
+K KM +IN+RMRVT+ DGR + G+ +AFD+HMNLVL D EEFR++ P A
Sbjct: 3 NKQGKMAGYINWRMRVTLNDGRAMTGQMLAFDKHMNLVLADTEEFRRVKRKQNKPAAPGA 62
Query: 55 KGKKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAGP 108
G T E E++RTLGL ++RG +IS++VE PPP + +S +S++ AGP
Sbjct: 63 SGSATQTIES-EEKRTLGLTIVRGAHIISLSVESPPPADPSARLGKSAPGGISSALAAGP 121
Query: 109 GIGRAAGRG 117
G+ R AGRG
Sbjct: 122 GVARPAGRG 130
>gi|154279158|ref|XP_001540392.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150412335|gb|EDN07722.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 244
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 81/125 (64%), Gaps = 16/125 (12%)
Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN-------TNEER 65
INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ K T E
Sbjct: 29 INYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSTKSTQAPGSSTPTLVEA 88
Query: 66 EDRRTLGLVLLRGEEVISMTVEGPPPPE-ESR--------AKAVSASAVAGPGIGRAAGR 116
E++RTLGL +LRG +V+S +V+GPPP + +R + A +A+ AGPGI R AGR
Sbjct: 89 EEKRTLGLTILRGTQVVSCSVDGPPPADPAARLGSTVPGASGASAATLAAGPGISRPAGR 148
Query: 117 GVPAA 121
G+P +
Sbjct: 149 GLPVS 153
>gi|156036372|ref|XP_001586297.1| hypothetical protein SS1G_12875 [Sclerotinia sclerotiorum 1980]
gi|154698280|gb|EDN98018.1| hypothetical protein SS1G_12875 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 216
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 94/158 (59%), Gaps = 32/158 (20%)
Query: 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN--- 62
++K + INYRMRVT+ DGRQ+VG+ +AFD+HMNLVL D EEFR++ K K T
Sbjct: 2 ANKQGKMINYRMRVTMNDGRQMVGQMLAFDKHMNLVLADTEEFRRVKR-KAPKATTAPGA 60
Query: 63 -------EEREDRRTLGLVLLRGEEVISMTVEGPPPPE-ESRAKAV-------SASAVAG 107
E E++RTLGL ++RG VIS++VE PPP + +R A SA+ AG
Sbjct: 61 SSAAPLLVETEEKRTLGLTIIRGTHVISLSVESPPPADPSARLGASVPGGAVPSAAMAAG 120
Query: 108 PGIGR-AAGRGVPAAPLVQAQPGLAGPVRGVGGPAPGM 144
GI R AAGRG GLAGP G+GG PGM
Sbjct: 121 TGIARPAAGRG-----------GLAGPAVGIGG-FPGM 146
>gi|149621318|ref|XP_001518812.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Ornithorhynchus anatinus]
Length = 155
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 96/160 (60%), Gaps = 23/160 (14%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
++++M Q+++YR+RV+I+DGR+ VG F+AFDRHMNLVL DCEEFR L KG K E
Sbjct: 4 RNNRMQQWLHYRVRVSIKDGRKFVGTFIAFDRHMNLVLADCEEFR-LTLNKGLK----EP 58
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASA---VAGPGIGRAAGRGVPAA 121
E +RTLG +LLRGE ++S T E PP V+ + V GPG AGRG+P
Sbjct: 59 IEVKRTLGFILLRGENIVSFTAEAPP---------VNTNLPGHVGGPGKATPAGRGMPLV 109
Query: 122 PLVQA------QPGLAGPVRGVGGPAPGMMQPQISRPPIP 155
+ GL P+RG+ G AP + PQ++ +P
Sbjct: 110 MPMGMPPMPPQSIGLKAPLRGLVGAAPVQITPQVNVGSMP 149
>gi|336363832|gb|EGN92203.1| hypothetical protein SERLA73DRAFT_147568 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380958|gb|EGO22110.1| hypothetical protein SERLADRAFT_394784 [Serpula lacrymans var.
lacrymans S7.9]
Length = 100
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 68/90 (75%), Gaps = 3/90 (3%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
SK KML IN+R++VTI DGR L G+ +AFDRHMNLVL DCEEFR++ P K K T
Sbjct: 6 SKGGKMLSLINWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKK-KAGETET 64
Query: 64 --EREDRRTLGLVLLRGEEVISMTVEGPPP 91
E+E +R LGLV+LRGE V+S++VEGPPP
Sbjct: 65 PPEQEMKRALGLVILRGETVVSLSVEGPPP 94
>gi|358382440|gb|EHK20112.1| hypothetical protein TRIVIDRAFT_213486 [Trichoderma virens Gv29-8]
Length = 215
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 81/123 (65%), Gaps = 13/123 (10%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAK----- 55
M+ +K KM +INYRMRVT+QD RQLVG+ +A+DRHMNLVL D EEFR++ +
Sbjct: 1 MASNKLGKMAGYINYRMRVTLQDSRQLVGQMLAYDRHMNLVLADTEEFRRIKRKQNKPAA 60
Query: 56 --GKKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAG 107
G + +E++RTLGLV++RG +IS+TVE PPP + ++ ++++ AG
Sbjct: 61 PGGSSSGQTVVQEEKRTLGLVIVRGAHIISLTVESPPPADPSARLGKTTTGGIASTLQAG 120
Query: 108 PGI 110
PG+
Sbjct: 121 PGV 123
>gi|261204882|ref|XP_002627178.1| small nuclear ribonucleoprotein SmB [Ajellomyces dermatitidis
SLH14081]
gi|239592237|gb|EEQ74818.1| small nuclear ribonucleoprotein SmB [Ajellomyces dermatitidis
SLH14081]
gi|239611606|gb|EEQ88593.1| small nuclear ribonucleoprotein SmB [Ajellomyces dermatitidis ER-3]
gi|327348380|gb|EGE77237.1| small nuclear ribonucleoprotein SmB [Ajellomyces dermatitidis ATCC
18188]
Length = 226
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/136 (46%), Positives = 83/136 (61%), Gaps = 16/136 (11%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL--PPAK--- 55
MS +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ P K
Sbjct: 1 MSANKQGKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKPTKSTQ 60
Query: 56 --GKKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVA------- 106
G T E E++RTLGL ++RG V+S +V+GPPP + + + V+
Sbjct: 61 APGSSTPTLVEAEEKRTLGLTIVRGTHVVSCSVDGPPPADPAARLGTTVPGVSGAAAATL 120
Query: 107 --GPGIGRAAGRGVPA 120
GPGI R AGRG+P
Sbjct: 121 AAGPGISRPAGRGLPV 136
>gi|393911566|gb|EFO26903.2| hypothetical protein LOAG_01578 [Loa loa]
Length = 168
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 79/116 (68%), Gaps = 4/116 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++SK++KM+ +N +M+V + D R VG F AFD+HMN++L DCEE R++ P GKK
Sbjct: 1 MTISKNNKMMSHLNRKMKVVLLDSRTFVGYFKAFDKHMNILLCDCEELRRIKPKPGKK-- 58
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGR 116
E E++RTLGLVLLRGE ++SMTV+ E+S+ + A + GPG + AGR
Sbjct: 59 -IAEGEEKRTLGLVLLRGEHIVSMTVQSNEQDEDSKQQG-KAGNIGGPGAAKPAGR 112
>gi|170593211|ref|XP_001901358.1| small nuclear ribonucleoprotein-associated protein homolog F9F13.90
- Arabidopsis thaliana [Brugia malayi]
gi|158591425|gb|EDP30038.1| small nuclear ribonucleoprotein-associated protein homolog F9F13.90
- Arabidopsis thaliana, putative [Brugia malayi]
Length = 168
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 79/116 (68%), Gaps = 4/116 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++SK++KM+ +N +M+V + D R VG F AFD+HMN++L DCEE R++ P GKK
Sbjct: 1 MTISKNNKMMSHLNRKMKVVLLDSRTFVGYFKAFDKHMNILLCDCEELRRIKPKPGKK-- 58
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGR 116
E E++RTLGLVLLRGE ++SMTV+ E+S+ + A + GPG + AGR
Sbjct: 59 -IAEGEEKRTLGLVLLRGEHIVSMTVQSNEQDEDSKQQG-KAGNIGGPGAAKPAGR 112
>gi|295672636|ref|XP_002796864.1| hypothetical protein PAAG_00723 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226282236|gb|EEH37802.1| hypothetical protein PAAG_00723 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 227
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 84/139 (60%), Gaps = 22/139 (15%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M+ K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ K K
Sbjct: 1 MASIKQGKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRV---KRKSTK 57
Query: 61 TNE----------EREDRRTLGLVLLRGEEVISMTVEGPPPPE-----ESRAKAVS---- 101
T + E E++RTLGL ++RG V+S +V+GPPP + + +VS
Sbjct: 58 TTQAPGSSTPSLVEVEEKRTLGLTIVRGTHVVSCSVDGPPPADPAARLGTTVPSVSGAGP 117
Query: 102 ASAVAGPGIGRAAGRGVPA 120
+ AGPGI R AGRG+P
Sbjct: 118 TTLAAGPGISRPAGRGLPV 136
>gi|345567932|gb|EGX50834.1| hypothetical protein AOL_s00054g920 [Arthrobotrys oligospora ATCC
24927]
Length = 215
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 79/125 (63%), Gaps = 11/125 (8%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN-- 62
K KM INYRMRVT+ D RQL G +AFD+HMN+VL D EEFR+ K K+N N
Sbjct: 4 KQGKMANLINYRMRVTLNDSRQLTGTLLAFDKHMNVVLADTEEFRR-TKRKATKSNPNAP 62
Query: 63 -EEREDRRTLGLVLLRGEEVISMTVEGPPPPE-ESRAKAVSASAVA------GPGIGRAA 114
E E++RTLGL++LRG ++S++VEGPP SR S + + GPGI R A
Sbjct: 63 TTEVEEKRTLGLIILRGMTIVSLSVEGPPTETPASRLPVGSGAGTSQTPIQPGPGIARPA 122
Query: 115 GRGVP 119
GRG+P
Sbjct: 123 GRGLP 127
>gi|330929454|ref|XP_003302642.1| hypothetical protein PTT_14550 [Pyrenophora teres f. teres 0-1]
gi|311321831|gb|EFQ89242.1| hypothetical protein PTT_14550 [Pyrenophora teres f. teres 0-1]
Length = 212
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 84/129 (65%), Gaps = 16/129 (12%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR------KLPPAKGK 57
++ KM INYRM+VT+QDGRQ+VG+ +AFD+HMNLVL D EEFR K P +
Sbjct: 6 NRQGKMQNLINYRMKVTLQDGRQMVGQMLAFDKHMNLVLADTEEFRRTRRRGKAAPGAAQ 65
Query: 58 KNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE-ESRAKA------VSASAVAGPGI 110
+ E E+RR +GL ++RG VIS++V+GPPP + +R A +A+ AGPG+
Sbjct: 66 QVT---ETEERRAIGLTIIRGAHVISLSVDGPPPADPAARLGASGAGPSTTAALAAGPGV 122
Query: 111 GRAAGRGVP 119
R AGRG+P
Sbjct: 123 ARPAGRGLP 131
>gi|212537667|ref|XP_002148989.1| small nuclear ribonucleoprotein SmB, putative [Talaromyces
marneffei ATCC 18224]
gi|210068731|gb|EEA22822.1| small nuclear ribonucleoprotein SmB, putative [Talaromyces
marneffei ATCC 18224]
Length = 202
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 82/133 (61%), Gaps = 13/133 (9%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ K+
Sbjct: 1 MAANKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKAAKQAP 60
Query: 61 TNE-----EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVS--------ASAVAG 107
E E++RTLGL ++RG V+S +V+GPPP + S S A+ AG
Sbjct: 61 GAAAAPLVEAEEKRTLGLTIVRGTNVVSCSVDGPPPADPSARLGTSVPNVPSGAATLSAG 120
Query: 108 PGIGRAAGRGVPA 120
PGI R AGRG+P
Sbjct: 121 PGISRPAGRGLPV 133
>gi|121706898|ref|XP_001271668.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus clavatus
NRRL 1]
gi|119399816|gb|EAW10242.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus clavatus
NRRL 1]
Length = 219
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 83/132 (62%), Gaps = 12/132 (9%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL----PPAKG 56
M+ +K KM INYRMR+T+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ PA G
Sbjct: 1 MAANKQGKMQNLINYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAG 60
Query: 57 KKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSA--------SAVAGP 108
N E E++RTLGL ++RG V+S +V+GPPP + S + + AGP
Sbjct: 61 PSNAPLVEAEEKRTLGLTIVRGTHVVSCSVDGPPPADPSARLGTNVPGAAAAAATLAAGP 120
Query: 109 GIGRAAGRGVPA 120
GI + AGRG+P
Sbjct: 121 GISKPAGRGLPV 132
>gi|358392771|gb|EHK42175.1| hypothetical protein TRIATDRAFT_312688 [Trichoderma atroviride IMI
206040]
Length = 216
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 80/123 (65%), Gaps = 13/123 (10%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAK----- 55
M+ +K KM +INYRMRVT+QD RQLVG+ +A+DRHMNLVL D EEFR++ +
Sbjct: 1 MASNKLGKMAGYINYRMRVTLQDSRQLVGQMLAYDRHMNLVLADTEEFRRIKRKQTKAAA 60
Query: 56 --GKKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAG 107
G +E++RTLGLV++RG +IS+TVE PPP + ++ ++++ AG
Sbjct: 61 PSGSSAGQTVVQEEKRTLGLVIVRGAHIISLTVESPPPADPSARLGKTTTGGIASTLQAG 120
Query: 108 PGI 110
PG+
Sbjct: 121 PGV 123
>gi|58260056|ref|XP_567438.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134116264|ref|XP_773086.1| hypothetical protein CNBJ0810 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255707|gb|EAL18439.1| hypothetical protein CNBJ0810 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229488|gb|AAW45921.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 195
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 9/114 (7%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE---ER 65
M+ ++YR++VT+ DGR LVG+ +A+D+HMN VL +CEEFR + K K ++NE
Sbjct: 1 MVTLLHYRLKVTLNDGRSLVGQMLAYDKHMNFVLAECEEFRTV-KGKKAKASSNEPAPTT 59
Query: 66 EDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVP 119
+ +RTLGLV+LRGE ++S++VEGPPP ++ S + GPG G AAGRG+P
Sbjct: 60 QQKRTLGLVILRGETIVSVSVEGPPPVQKE-----EPSLIPGPGKGMAAGRGMP 108
>gi|321262987|ref|XP_003196212.1| hypothetical Protein CGB_I3560W [Cryptococcus gattii WM276]
gi|317462687|gb|ADV24425.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 197
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 81/114 (71%), Gaps = 9/114 (7%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE---ER 65
M+ ++YR++VT+ DGR LVG+ +A+D+HMN VL +CEEFR + AK K +++E
Sbjct: 1 MVTLLHYRLKVTLNDGRSLVGQMLAYDKHMNFVLAECEEFRTV-KAKKAKGSSSEPAPTT 59
Query: 66 EDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVP 119
+ +RTLGLV+LRGE ++S++VEGPPP ++ S + GPG G AAGRG+P
Sbjct: 60 QQKRTLGLVILRGETIVSVSVEGPPPVQKE-----EPSLIPGPGKGMAAGRGMP 108
>gi|389630628|ref|XP_003712967.1| hypothetical protein MGG_16920 [Magnaporthe oryzae 70-15]
gi|351645299|gb|EHA53160.1| hypothetical protein MGG_16920 [Magnaporthe oryzae 70-15]
gi|440475687|gb|ELQ44352.1| hypothetical protein OOU_Y34scaffold00090g17 [Magnaporthe oryzae
Y34]
gi|440479842|gb|ELQ60581.1| hypothetical protein OOW_P131scaffold01278g17 [Magnaporthe oryzae
P131]
Length = 205
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 70/98 (71%), Gaps = 8/98 (8%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK------ 57
+K KM +INYRMRVT+ DGRQ+VG+ MAFD+HMNLVL D EEFRK+ + K
Sbjct: 5 NKQGKMAGYINYRMRVTLNDGRQMVGQMMAFDKHMNLVLADTEEFRKIKRKQAKPAAPGA 64
Query: 58 --KNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
+++ E E++RTLGL ++RG +++S++VE PPP +
Sbjct: 65 SGASSSTVESEEKRTLGLTIVRGAQIVSLSVESPPPAD 102
>gi|340519199|gb|EGR49438.1| predicted protein [Trichoderma reesei QM6a]
Length = 217
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 81/125 (64%), Gaps = 19/125 (15%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MS +K KM +INYRMRVT+QD RQLVG+ +A+DRHMNLVL D EEFR++ +KN
Sbjct: 1 MSSNKLGKMAGYINYRMRVTLQDSRQLVGQMLAYDRHMNLVLADTEEFRRVK----RKNK 56
Query: 61 T---------NEEREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAV 105
+ +E++RTLGLV+ RG +IS+TVE PPP + ++ ++++
Sbjct: 57 SAAPGGSAGQTVVQEEKRTLGLVIARGAHIISLTVESPPPADPSARLGKTTTGGIASTLQ 116
Query: 106 AGPGI 110
AGPG+
Sbjct: 117 AGPGV 121
>gi|429327489|gb|AFZ79249.1| small nuclear ribonucleoprotein-associated protein B, putative
[Babesia equi]
Length = 153
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 89/153 (58%), Gaps = 23/153 (15%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
K+++M Q++ Y +RVT++DGR+ VG +AFD+HMNLVL DCEEFR KGK E
Sbjct: 4 KNTRMQQWLQYTVRVTVKDGRKFVGTLIAFDKHMNLVLADCEEFRM---TKGK-----EG 55
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLV 124
+E +RTLG +LLRGE ++S T + PP A ++ AGPG AGRG P P +
Sbjct: 56 KEIKRTLGFILLRGENIVSFTAKAPP------AASLMPFGAAGPGKAIPAGRGTPIMPGM 109
Query: 125 QAQ---------PGLAGPVRGVGGPAPGMMQPQ 148
Q L P+RG+ G AP + PQ
Sbjct: 110 TQQGMPHMQPNAAALQAPMRGLIGAAPLQLAPQ 142
>gi|342879533|gb|EGU80778.1| hypothetical protein FOXB_08645 [Fusarium oxysporum Fo5176]
Length = 224
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 80/130 (61%), Gaps = 16/130 (12%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL---------PPA 54
+K KM +IN+RMRVT+ DGR + G+ +AFD+HMNLVL D EEFR++ P A
Sbjct: 3 NKQGKMAGYINWRMRVTLNDGRAMTGQMLAFDKHMNLVLADTEEFRRVKRKQNKPSAPGA 62
Query: 55 KGKKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSA------SAVAGP 108
G T E E++RTLGL ++RG +IS++VE PPP + S SA + AGP
Sbjct: 63 SGSATQTIES-EEKRTLGLTIVRGAHIISLSVESPPPADPSARLGKSAPGGIPSALAAGP 121
Query: 109 GIGRAAGRGV 118
G+ R AGRG
Sbjct: 122 GVARPAGRGA 131
>gi|440636332|gb|ELR06251.1| hypothetical protein GMDG_02046 [Geomyces destructans 20631-21]
Length = 205
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 92/156 (58%), Gaps = 23/156 (14%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
+K KM INYRMRVT+ DGRQ++G+ +AFD+HMNLVL D EEFR++ K +
Sbjct: 3 NKQGKMAGLINYRMRVTMNDGRQMIGQMLAFDKHMNLVLADTEEFRRVKRKATKPSAAPG 62
Query: 64 ---------EREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAGP 108
E E++RTLGL ++RG +IS++VE PPP + S SA+ AGP
Sbjct: 63 AAGSSAPLVENEEKRTLGLTIVRGAHIISLSVESPPPADPSARLGTSAPGGASAAMAAGP 122
Query: 109 GIGRAAGRGVPAAPLVQAQPGLAGPVRGVGGPAPGM 144
GI R AGRG+P GL GP GVGG PG+
Sbjct: 123 GIARPAGRGLPV--------GLTGPAAGVGGAPPGL 150
>gi|340897383|gb|EGS16973.1| putative RNA splicing factor [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 211
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 80/118 (67%), Gaps = 9/118 (7%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
S ++ KM +IN+RMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFRK + K N++
Sbjct: 4 SQNRQGKMAGYINWRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRKTKRMQAKPNSS 63
Query: 62 NEE---REDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAGPGI 110
+ +E++RTLGL ++RG +I+++VE PPP + ++ ++++ AGPG+
Sbjct: 64 TTQTLIQEEKRTLGLTIVRGANIIALSVESPPPADPSARLGKTTGAGIASTLTAGPGV 121
>gi|358366072|dbj|GAA82693.1| hypothetical protein AKAW_00808 [Aspergillus kawachii IFO 4308]
Length = 220
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 68/97 (70%), Gaps = 4/97 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL----PPAKG 56
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ PA G
Sbjct: 1 MAANKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAG 60
Query: 57 KKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
N E E++RTLGL ++RG V+S +V+GPPP +
Sbjct: 61 STNAPLVEAEEKRTLGLTIVRGTHVVSCSVDGPPPAD 97
>gi|145256987|ref|XP_001401581.1| small nuclear ribonucleoprotein SmB [Aspergillus niger CBS
513.88]
gi|134058491|emb|CAL00700.1| unnamed protein product [Aspergillus niger]
Length = 220
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 68/97 (70%), Gaps = 4/97 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL----PPAKG 56
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ PA G
Sbjct: 1 MAANKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAG 60
Query: 57 KKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
N E E++RTLGL ++RG V+S +V+GPPP +
Sbjct: 61 STNAPLVEAEEKRTLGLTIVRGTHVVSCSVDGPPPAD 97
>gi|380488863|emb|CCF37089.1| SMB [Colletotrichum higginsianum]
Length = 220
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 82/128 (64%), Gaps = 14/128 (10%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL------PPAKGKK--NN 60
M +INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ P A G +
Sbjct: 1 MAGYINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKIRQNKPAAPGASAPSG 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAGPGIGRAA 114
E+E++RTLGL ++RG ++S++VE PP + +S +S++ AGPG+ R A
Sbjct: 61 QTIEKEEKRTLGLTIVRGAHIVSLSVESEPPADPSARLGKSAPGGISSTLTAGPGVARPA 120
Query: 115 GRGVPAAP 122
GRG AP
Sbjct: 121 GRGAAPAP 128
>gi|407921641|gb|EKG14782.1| hypothetical protein MPH_08057 [Macrophomina phaseolina MS6]
Length = 218
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/130 (46%), Positives = 80/130 (61%), Gaps = 14/130 (10%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
+K KM INYRMR T+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ K
Sbjct: 5 NKQGKMQNLINYRMRATLNDGRQMAGQMLAFDKHMNLVLADTEEFRRVKRKSTKSQAPGA 64
Query: 64 -------EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSA---SAV----AGPG 109
E E++RTLGL ++RG ++S++VEGPPP + S SA +A AGPG
Sbjct: 65 AAAAPIVEAEEKRTLGLTIVRGCHIVSLSVEGPPPADPSARLGTSAPGGAAAPTLPAGPG 124
Query: 110 IGRAAGRGVP 119
I + AGRG+P
Sbjct: 125 ISKPAGRGLP 134
>gi|302415168|ref|XP_003005416.1| SMB [Verticillium albo-atrum VaMs.102]
gi|261356485|gb|EEY18913.1| SMB [Verticillium albo-atrum VaMs.102]
Length = 184
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 78/119 (65%), Gaps = 13/119 (10%)
Query: 12 FINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK-------KNNTNEE 64
+INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ + K + E
Sbjct: 21 YINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKQNKPSAPGASGSGQTVE 80
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAGPGIGRAAGRG 117
E++RTLGL ++RG +++S++VE PP + +S ++++ AGPG+ R AGRG
Sbjct: 81 SEEKRTLGLTIVRGAQIVSLSVESEPPADPSARLGKSATGGIASTLSAGPGVARPAGRG 139
>gi|452980360|gb|EME80121.1| hypothetical protein MYCFIDRAFT_86773 [Pseudocercospora fijiensis
CIRAD86]
Length = 204
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 82/129 (63%), Gaps = 13/129 (10%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL---PPAKG--- 56
M+ S K + +NYRMR T+ DGRQLVG+ +AFD+HMNLVL DCEEFRK+ A G
Sbjct: 1 MASSQKQGKMVNYRMRATMNDGRQLVGQMLAFDKHMNLVLADCEEFRKVKRKAKASGAPG 60
Query: 57 -KKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSA--SAV----AGPG 109
+ E E++R+LGL ++RG ++S +V+GPPP + + SA AV AGPG
Sbjct: 61 AQTGGQMIEAEEKRSLGLAIVRGAHIVSCSVDGPPPADPAARLGQSAPGGAVPAMQAGPG 120
Query: 110 IGRAAGRGV 118
I + AGRG
Sbjct: 121 IAKPAGRGA 129
>gi|83769163|dbj|BAE59300.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 216
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 83/132 (62%), Gaps = 15/132 (11%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL----PPAKG 56
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ PA G
Sbjct: 1 MAANKQGKM---INYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAG 57
Query: 57 KKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSA--------SAVAGP 108
N E E++RTLGL ++RG V+S +V+GPPP + S S + AGP
Sbjct: 58 PANAPLVESEEKRTLGLTIVRGTHVVSCSVDGPPPADPSARLGTSVPGAAAAAATLAAGP 117
Query: 109 GIGRAAGRGVPA 120
GI + AGRG+P
Sbjct: 118 GISKPAGRGLPV 129
>gi|116181000|ref|XP_001220349.1| hypothetical protein CHGG_01128 [Chaetomium globosum CBS 148.51]
gi|88185425|gb|EAQ92893.1| hypothetical protein CHGG_01128 [Chaetomium globosum CBS 148.51]
Length = 381
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 77/120 (64%), Gaps = 13/120 (10%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK------ 57
+K KM +INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR+ + K
Sbjct: 5 NKQGKMAGYINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRSKRKQNKPAAPGA 64
Query: 58 -KNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAGPGI 110
+ T E+E++RTLGL ++RG ++S++VE PPP + +S ++ + AGPG+
Sbjct: 65 SSSTTVLEQEEKRTLGLTIVRGAHIVSLSVESPPPADPSARLGKSTGAGITTALAAGPGV 124
>gi|402077124|gb|EJT72473.1| hypothetical protein GGTG_09339 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 207
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/123 (42%), Positives = 80/123 (65%), Gaps = 15/123 (12%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK---- 57
S++K KM +INYRMR T+ DGRQ+VG+ +AFD+HMNLVL D EEFR++ + K
Sbjct: 3 SLNKQGKMAGYINYRMRTTLNDGRQMVGQMLAFDKHMNLVLADTEEFRRVKRKQAKPAAP 62
Query: 58 -----KNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVA 106
+++ E E++RTLGL ++RG +++S++VE PPP + ++ +S + A
Sbjct: 63 GAASGSSSSTVETEEKRTLGLTIVRGAQIVSLSVESPPPADPSTRLGKTTTGGISTTLTA 122
Query: 107 GPG 109
GPG
Sbjct: 123 GPG 125
>gi|346977199|gb|EGY20651.1| SMB protein [Verticillium dahliae VdLs.17]
Length = 220
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/119 (43%), Positives = 77/119 (64%), Gaps = 13/119 (10%)
Query: 12 FINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK-------KNNTNEE 64
+INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ + K + E
Sbjct: 21 YINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKQNKPSAPGASGSGQTVE 80
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAGPGIGRAAGRG 117
E++RTLGL ++RG +++S++VE PP + S ++++ AGPG+ R AGRG
Sbjct: 81 SEEKRTLGLTIVRGAQIVSLSVESEPPADPSARLGRSATGGIASTLSAGPGVARPAGRG 139
>gi|400602928|gb|EJP70526.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 205
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 83/127 (65%), Gaps = 10/127 (7%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKK----N 59
+K KM +IN+RMRVT+ DGR + G+ +AFD+HMNLVL D EEFR++ + +
Sbjct: 3 NKQGKMAGYINWRMRVTLNDGRAMTGQMLAFDKHMNLVLADTEEFRRVKRRQERSAPGAG 62
Query: 60 NTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAGPGIGRA 113
+ E E++RTLGL ++RG ++S++VE PPP + +S ++++ AGPG+ +
Sbjct: 63 GSVVESEEKRTLGLTIVRGAYIVSLSVESPPPADPSARLGKSAPGGIASALSAGPGVAKP 122
Query: 114 AGRGVPA 120
AGRG PA
Sbjct: 123 AGRGAPA 129
>gi|189205535|ref|XP_001939102.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975195|gb|EDU41821.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 221
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 16/120 (13%)
Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR------KLPPAKGKKNNTNEERE 66
INYRM+VT+QDGRQ+VG+ +AFD+HMNLVL D EEFR K P ++ E E
Sbjct: 24 INYRMKVTLQDGRQMVGQMLAFDKHMNLVLADTEEFRRTRRRGKAAPGAAQQVT---ETE 80
Query: 67 DRRTLGLVLLRGEEVISMTVEGPPPPE-ESRAKA------VSASAVAGPGIGRAAGRGVP 119
+RR +GL ++RG VIS++V+GPPP + +R A +A+ AGPG+ R AGRG+P
Sbjct: 81 ERRAIGLTIIRGAHVISLSVDGPPPADPAARLGASGTGPSTTAALAAGPGVARPAGRGLP 140
>gi|118398961|ref|XP_001031807.1| Sm protein [Tetrahymena thermophila]
gi|89286141|gb|EAR84144.1| Sm protein [Tetrahymena thermophila SB210]
Length = 159
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 75/114 (65%), Gaps = 8/114 (7%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
M+ SK +Q+I+YR+RVTIQDGR LVG F+AFD+H+NLVL + EEFR + P K
Sbjct: 1 MANRSKFMQWIDYRVRVTIQDGRMLVGTFLAFDKHLNLVLSETEEFRPIKP----KTKGE 56
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGR 116
ER+ +R LGLV++RGE ++S+ E PP + AK + SA GPG + R
Sbjct: 57 PERQTKRILGLVIIRGENIVSINAEAPPSQQ---AKKIDTSA-TGPGTAQPINR 106
>gi|392577898|gb|EIW71026.1| hypothetical protein TREMEDRAFT_27133 [Tremella mesenterica DSM
1558]
Length = 113
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 76/113 (67%), Gaps = 8/113 (7%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK-KNNTNEERED 67
M+ INYR++V + DGR LVG+ +A+D+HMN VL +CEEFR + K N +
Sbjct: 1 MVTLINYRLKVVLNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKVTKDAPPNEPTPTVQQ 60
Query: 68 RRTLGLVLLRGEEVISMTVEGPPP-PEESRAKAVSASAVAGPGIGRAAGRGVP 119
+RTLGLV+LRGE ++S+TVEGPPP P+E + A AGPG G AGRG+P
Sbjct: 61 KRTLGLVILRGETIVSVTVEGPPPAPQEDKTVA------AGPGRGMPAGRGMP 107
>gi|225680898|gb|EEH19182.1| hypothetical protein PABG_01501 [Paracoccidioides brasiliensis
Pb03]
Length = 221
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 78/127 (61%), Gaps = 22/127 (17%)
Query: 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE--------- 63
INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ K K T +
Sbjct: 7 INYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRV---KRKSTKTTQAPGSSTPSL 63
Query: 64 -EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAV---------AGPGIGRA 113
E E++RTLGL ++RG V+S +V+GPPP + + + +V AGPGI R
Sbjct: 64 VEVEEKRTLGLTIVRGTHVVSCSVDGPPPADPAARLGTTVPSVSGAGPTTLAAGPGISRP 123
Query: 114 AGRGVPA 120
AGRG+P
Sbjct: 124 AGRGLPV 130
>gi|328858459|gb|EGG07571.1| hypothetical protein MELLADRAFT_71607 [Melampsora larici-populina
98AG31]
Length = 114
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/89 (56%), Positives = 64/89 (71%), Gaps = 6/89 (6%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT------N 62
ML INYR+RVT+ D R L G+ +AFDRH+NLVL DCEEFR + K K +T +
Sbjct: 1 MLALINYRLRVTLNDSRTLTGQMLAFDRHLNLVLADCEEFRFIKQKKRKGLSTGPTPDES 60
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPP 91
EE E +R LGLV+LRGE ++S++VEGPPP
Sbjct: 61 EELEMKRALGLVILRGETIVSLSVEGPPP 89
>gi|353242927|emb|CCA74526.1| related to small nuclear ribonucleoprotein associated protein b
[Piriformospora indica DSM 11827]
Length = 163
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 69/95 (72%), Gaps = 7/95 (7%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE---- 64
ML + +R+RVT+ D RQLVG+ +AFDRHMNLVL DCEEFR+ K KK + ++E
Sbjct: 1 MLSLVLWRIRVTLNDNRQLVGQMLAFDRHMNLVLADCEEFRR---VKQKKKSADDEAVPS 57
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKA 99
+E +R+LGLV+LRGE ++S++VEGPPP + K
Sbjct: 58 QELKRSLGLVILRGEMIVSLSVEGPPPQVDEDKKT 92
>gi|85119473|ref|XP_965639.1| hypothetical protein NCU02508 [Neurospora crassa OR74A]
gi|28927451|gb|EAA36403.1| predicted protein [Neurospora crassa OR74A]
gi|336464924|gb|EGO53164.1| hypothetical protein NEUTE1DRAFT_126545 [Neurospora tetrasperma
FGSC 2508]
gi|350297029|gb|EGZ78006.1| Sm-like ribonucleoprotein [Neurospora tetrasperma FGSC 2509]
Length = 213
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 80/126 (63%), Gaps = 20/126 (15%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN- 60
S +K KM +INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ K ++N
Sbjct: 3 STNKQGKMAGYINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADAEEFRRI---KRRQNKP 59
Query: 61 ----------TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASA 104
E+E++RTLGL ++RG ++S++VE PPP + +S ++++
Sbjct: 60 AAPGSSAPAVQTVEQEEKRTLGLTIIRGAHIVSLSVESPPPADPSARLGKSTGGGLASTL 119
Query: 105 VAGPGI 110
AGPG+
Sbjct: 120 QAGPGV 125
>gi|409040887|gb|EKM50373.1| hypothetical protein PHACADRAFT_104351 [Phanerochaete carnosa
HHB-10118-sp]
Length = 105
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 73/105 (69%), Gaps = 9/105 (8%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE---ER 65
ML IN+R++VT+ DGR VG+ +AFDRHMNLVL +CEEFR++ P KK+ E +
Sbjct: 1 MLSLINWRLKVTVNDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPK--KKSGETEAGPAQ 58
Query: 66 EDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGI 110
E +RTLGLV+LRGE V+S++VEGPPP + K +AV P +
Sbjct: 59 EMKRTLGLVILRGETVVSLSVEGPPPAGDDEKK----NAVRNPSL 99
>gi|358341144|dbj|GAA48892.1| small nuclear ribonucleoprotein B and B' [Clonorchis sinensis]
Length = 178
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 89/140 (63%), Gaps = 14/140 (10%)
Query: 21 IQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEE 80
+QDGRQLVG F AFDRHMNLVL DC+EFR + K K + +E++++R LGLVLLRGE
Sbjct: 1 MQDGRQLVGTFKAFDRHMNLVLCDCDEFRHV---KVKGSKQEKEKQEKRALGLVLLRGEH 57
Query: 81 VISMTVEGPPPPEESR-----AKAVSASAVAGPGIGRAAGRGV------PAAPLVQAQPG 129
V+S+ V+GPPPPE++ A A P G A GRG+ A P G
Sbjct: 58 VVSVNVDGPPPPEDTARVPLPGAGAWAGAGIKPMAGVAVGRGMPLATPAAAIPPPAPPAG 117
Query: 130 LAGPVRGVGGPAPGMMQPQI 149
LA PV GVG PAPG+MQP++
Sbjct: 118 LAAPVWGVGAPAPGLMQPRV 137
>gi|367044292|ref|XP_003652526.1| hypothetical protein THITE_2114118 [Thielavia terrestris NRRL 8126]
gi|346999788|gb|AEO66190.1| hypothetical protein THITE_2114118 [Thielavia terrestris NRRL 8126]
Length = 211
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 76/121 (62%), Gaps = 14/121 (11%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
+K KM +INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR+ + K
Sbjct: 5 NKQGKMAGYINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRTKRKQSKPAAPGA 64
Query: 64 --------EREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAGPG 109
E+E++RTLGL ++RG ++S++VE PPP + ++ + ++ + AGPG
Sbjct: 65 SSAAAQVIEQEEKRTLGLTIVRGAHIVSLSVESPPPADPSARLGKTTSAGIATTLTAGPG 124
Query: 110 I 110
+
Sbjct: 125 V 125
>gi|389585815|dbj|GAB68545.1| small nuclear ribonucleoprotein associated protein B', partial
[Plasmodium cynomolgi strain B]
Length = 235
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 79/136 (58%), Gaps = 18/136 (13%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
M K+S++ ++ YR+RVT+ D R VG F+++DRHMN+VL D EEFRK+ K+ N
Sbjct: 35 MGKNSRLENWLQYRVRVTVSDTRYFVGTFLSYDRHMNVVLVDAEEFRKV------KSKEN 88
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAP 122
+E +R +GL+L+RGE ++S T E P ++S A++ G A GRG+P
Sbjct: 89 SSKEIKRVIGLILIRGENIVSFTAERAPVNKKSMTNALNK--------GMATGRGIPMNN 140
Query: 123 LV----QAQPGLAGPV 134
V P +A P+
Sbjct: 141 YVPLQNNFNPNMANPI 156
>gi|390596776|gb|EIN06177.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 158
Score = 107 bits (268), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 74/109 (67%), Gaps = 4/109 (3%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG-KKNNTNEERED 67
ML IN+R++VTI DGR L G+ +AFDRHMNLVL +CEEFR++ P K + +E
Sbjct: 1 MLSLINWRLKVTINDGRALTGQMLAFDRHMNLVLAECEEFRRVRPKKKPGETEAGPVQEM 60
Query: 68 RRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGR 116
+R+LGLV+LRGE V+S++VEGPPP + K V GPG G AGR
Sbjct: 61 KRSLGLVILRGETVVSLSVEGPPPVTDEDKKNVLP---VGPGRGAPAGR 106
>gi|350632124|gb|EHA20492.1| hypothetical protein ASPNIDRAFT_44190 [Aspergillus niger ATCC 1015]
Length = 310
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 68/97 (70%), Gaps = 7/97 (7%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL----PPAKG 56
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ PA G
Sbjct: 83 MAANKQGKM---INYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAG 139
Query: 57 KKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
N E E++RTLGL ++RG V+S +V+GPPP +
Sbjct: 140 STNAPLVEAEEKRTLGLTIVRGTHVVSCSVDGPPPAD 176
>gi|123474847|ref|XP_001320604.1| Sm protein [Trichomonas vaginalis G3]
gi|121903413|gb|EAY08381.1| Sm protein [Trichomonas vaginalis G3]
Length = 158
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 85/144 (59%), Gaps = 9/144 (6%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
+ SK+ +FIN R++V I D R VG+ +AFD H N+VL DCEE+R+L + E
Sbjct: 5 RGSKLSKFINSRVKVVISDHRYFVGQMLAFDTHSNIVLKDCEEYRRL-----NRRKAGEL 59
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPG----IGRAAGRGVPA 120
+E +R +GL++LRGE V+ + + GPPPP +R A +AS+V PG +A+G G+
Sbjct: 60 QEAKRNIGLMILRGETVLHIDIVGPPPPNGNRMSASTASSVLQPGGTPEKAKASGSGLGN 119
Query: 121 APLVQAQPGLAGPVRGVGGPAPGM 144
L LA P GVG P+ +
Sbjct: 120 LELPGQMGSLAKPAMGVGLPSSSL 143
>gi|322708628|gb|EFZ00205.1| LSM domain containing protein [Metarhizium anisopliae ARSEF 23]
Length = 205
Score = 107 bits (266), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 78/125 (62%), Gaps = 11/125 (8%)
Query: 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK-----KNN 60
S+K + IN+RMRV + DGR + G+ +AFD+HMNLVL D EEFR++ K ++
Sbjct: 2 SNKQGKMINWRMRVILNDGRAMTGQMLAFDKHMNLVLADTEEFRRVKRKASKPSAPGSSS 61
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSA------SAVAGPGIGRAA 114
E E++RTLGL ++RG ++S++VE PPP + S SA + AGPG+ + A
Sbjct: 62 QVVETEEKRTLGLTIVRGAHIVSLSVESPPPADPSARLGKSAPGGIPSTLTAGPGVAKPA 121
Query: 115 GRGVP 119
GRG P
Sbjct: 122 GRGAP 126
>gi|405122609|gb|AFR97375.1| smb [Cryptococcus neoformans var. grubii H99]
Length = 160
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 81/114 (71%), Gaps = 9/114 (7%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE---ER 65
M+ ++YR++VT+ DGR LVG+ +A+D+HMN VL +CEEFR + K K+++NE
Sbjct: 1 MVTLLHYRLKVTLNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKGKK-SKSSSNEPAPTT 59
Query: 66 EDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVP 119
+ +RTLGLV+LRGE ++S++VEGPPP ++ S + GPG G AAGRG+P
Sbjct: 60 QQKRTLGLVILRGETIVSVSVEGPPPVQKE-----EPSLIPGPGKGMAAGRGMP 108
>gi|50550683|ref|XP_502814.1| YALI0D14102p [Yarrowia lipolytica]
gi|49648682|emb|CAG81002.1| YALI0D14102p [Yarrowia lipolytica CLIB122]
Length = 164
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 66/97 (68%), Gaps = 10/97 (10%)
Query: 7 SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR--KLPPAKGKKNNTNEE 64
+KM +NYR+RVT DG+Q+VG+ +AFDR+MNLVL DCEEFR K + KK E
Sbjct: 7 TKMADLVNYRLRVTTVDGKQMVGQMLAFDRYMNLVLSDCEEFRATKKSLLEAKKTIQIEN 66
Query: 65 --------REDRRTLGLVLLRGEEVISMTVEGPPPPE 93
E++RTLGLV+LRGE V+S++VE PPP +
Sbjct: 67 GDASSVSITEEKRTLGLVILRGETVVSVSVEAPPPTD 103
>gi|115398031|ref|XP_001214607.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192798|gb|EAU34498.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 215
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 68/97 (70%), Gaps = 7/97 (7%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL----PPAKG 56
M+ +K KM INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ PA G
Sbjct: 1 MAANKQGKM---INYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAG 57
Query: 57 KKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
N E E++RTLGL ++RG V+S +V+GPPP +
Sbjct: 58 AANAPLVESEEKRTLGLAIVRGTHVVSCSVDGPPPAD 94
>gi|302501682|ref|XP_003012833.1| hypothetical protein ARB_01084 [Arthroderma benhamiae CBS 112371]
gi|291176393|gb|EFE32193.1| hypothetical protein ARB_01084 [Arthroderma benhamiae CBS 112371]
Length = 192
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 76/120 (63%), Gaps = 17/120 (14%)
Query: 17 MRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK-------KNNTN--EERED 67
MRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ GK ++T E E+
Sbjct: 1 MRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQAAPGSSSTTPLVEAEE 60
Query: 68 RRTLGLVLLRGEEVISMTVEGPPPPE--------ESRAKAVSASAVAGPGIGRAAGRGVP 119
+RTLGL ++RG V+S +V+GPPP E + VSA+ AGPGI + AGRG+P
Sbjct: 61 KRTLGLTIVRGTHVVSCSVDGPPPAEPAARLGTTAAGLAGVSATLAAGPGISKPAGRGLP 120
>gi|124808462|ref|XP_001348319.1| ribonucleoprotein, putative [Plasmodium falciparum 3D7]
gi|23497211|gb|AAN36758.1|AE014818_23 ribonucleoprotein, putative [Plasmodium falciparum 3D7]
Length = 201
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 76/132 (57%), Gaps = 14/132 (10%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
M K+S++ ++ YR+RVTI D R VG F+++DRHMN+VL D EEFRK+ K+ N
Sbjct: 1 MGKNSRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKV------KSQEN 54
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAP 122
+E +R +GL+L+RGE ++S T E P ++S ++ G A GRG+P
Sbjct: 55 SLKEIKRVVGLILIRGENIVSFTAEQAPINKKSMGTVINK--------GIATGRGIPLNN 106
Query: 123 LVQAQPGLAGPV 134
V Q P+
Sbjct: 107 YVPMQNNFNNPL 118
>gi|403221959|dbj|BAM40091.1| small nuclear ribonucleoprotein associated protein b [Theileria
orientalis strain Shintoku]
Length = 153
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 81/151 (53%), Gaps = 21/151 (13%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
K+++M ++ Y +RVT++D R+ VG +AFDRHMNLVL DCEEFR GK N
Sbjct: 4 KNTRMQHWLQYNVRVTLKDNRKFVGTLVAFDRHMNLVLSDCEEFRM---TLGKDKN---R 57
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAA--- 121
E +RTLG VLLRGE ++S T + P P + GPG AGRG P
Sbjct: 58 TEIKRTLGFVLLRGENIVSFTAKSPANP-------LHMGYGVGPGKAAPAGRGAPLMVGV 110
Query: 122 -----PLVQAQPGLAGPVRGVGGPAPGMMQP 147
P+ L P+RG+ G AP +QP
Sbjct: 111 GPGMPPIAPNASALQAPMRGLIGSAPAQLQP 141
>gi|167520394|ref|XP_001744536.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776867|gb|EDQ90485.1| predicted protein [Monosiga brevicollis MX1]
Length = 73
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/80 (58%), Positives = 63/80 (78%), Gaps = 7/80 (8%)
Query: 11 QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRT 70
QF+NYRMR+T DGR L+G FMA+D+HMN++L DCEE RK P KG +E+E++RT
Sbjct: 1 QFLNYRMRITTDDGRYLIGTFMAYDKHMNIILADCEEHRK--PKKGA-----DEKEEKRT 53
Query: 71 LGLVLLRGEEVISMTVEGPP 90
LGL+LLRGE V+ +++EGPP
Sbjct: 54 LGLILLRGENVLGLSIEGPP 73
>gi|402581979|gb|EJW75926.1| hypothetical protein WUBG_13167 [Wuchereria bancrofti]
Length = 160
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 70/108 (64%), Gaps = 4/108 (3%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
M+ +N +M+V + D R VG F AFD+HMN++L DCEE R++ P GKK EE +
Sbjct: 1 MMSHLNRKMKVVLLDSRTFVGYFKAFDKHMNILLCDCEELRRIKPKPGKKITEGEE---K 57
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGR 116
RTLGLVLLRGE ++SMTV+ E+S+ + A + GPG + AGR
Sbjct: 58 RTLGLVLLRGEHIVSMTVQSNEQDEDSKQQG-KAGNIGGPGAAKPAGR 104
>gi|340508672|gb|EGR34332.1| hypothetical protein IMG5_016230 [Ichthyophthirius multifiliis]
Length = 1010
Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats.
Identities = 55/133 (41%), Positives = 80/133 (60%), Gaps = 18/133 (13%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
S+ SK +Q+I+YR+RVTI DGR LVG F+AFD+H+NLV+ + EEFR + P K +
Sbjct: 833 SRRSKFIQWIDYRVRVTILDGRMLVGTFLAFDKHLNLVISETEEFRPIKP----KKKGDP 888
Query: 64 EREDRRTLGLVLLRGEEVISMTVEGPPPPEES-------------RAKAVSASAVAGPGI 110
ER+ +R LGLV++RGE +IS+ E PP + + +++ V S V GPG
Sbjct: 889 ERQTKRILGLVIIRGENIISINAEAPPNQQVNIVNFFYLFIYLFQQSRKVDTSTV-GPGQ 947
Query: 111 GRAAGRGVPAAPL 123
+ R V P+
Sbjct: 948 AQPIQRMVQIPPM 960
>gi|119500980|ref|XP_001267247.1| small nuclear ribonucleoprotein SmB, putative [Neosartorya
fischeri NRRL 181]
gi|119415412|gb|EAW25350.1| small nuclear ribonucleoprotein SmB, putative [Neosartorya
fischeri NRRL 181]
Length = 215
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 68/97 (70%), Gaps = 7/97 (7%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL----PPAKG 56
M+ +K KM INYRMR+T+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ PA G
Sbjct: 1 MAANKQGKM---INYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAG 57
Query: 57 KKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
N E E++RTLGL ++RG V+S +V+GPPP E
Sbjct: 58 PSNAPLVEAEEKRTLGLTIVRGTHVVSCSVDGPPPAE 94
>gi|221060398|ref|XP_002260844.1| ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193810918|emb|CAQ42816.1| ribonucleoprotein, putative [Plasmodium knowlesi strain H]
Length = 201
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 74/122 (60%), Gaps = 14/122 (11%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
M K+S++ ++ YR+RVT+ D R VG F+++DRHMN+VL D EEFR++ K+ N
Sbjct: 1 MGKNSRLENWLQYRVRVTVSDTRYFVGTFLSYDRHMNIVLVDAEEFRRV------KSQEN 54
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAP 122
+E +R +GL+L+RGE ++S T E P ++S A ++ G A GRG+P
Sbjct: 55 SSKEIKRVIGLILIRGENIVSFTAERAPVNKKSTANVLNK--------GMATGRGIPMNN 106
Query: 123 LV 124
V
Sbjct: 107 YV 108
>gi|156102224|ref|XP_001616805.1| small nuclear ribonucleoprotein associated protein B' [Plasmodium
vivax Sal-1]
gi|148805679|gb|EDL47078.1| small nuclear ribonucleoprotein associated protein B', putative
[Plasmodium vivax]
Length = 201
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 73/122 (59%), Gaps = 14/122 (11%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
M K+S++ ++ YR+RVT+ D R VG F+++DRHMN+VL D EEFRK+ K+ N
Sbjct: 1 MGKNSRLENWLQYRVRVTVSDTRYFVGTFLSYDRHMNIVLVDAEEFRKV------KSQEN 54
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAP 122
+E +R +GL+L+RGE ++S T E P ++S ++ G A GRG+P
Sbjct: 55 SSKEIKRVIGLILIRGENIVSFTAERAPVNKKSMTNVLNK--------GMATGRGIPMNN 106
Query: 123 LV 124
V
Sbjct: 107 YV 108
>gi|222423458|dbj|BAH19699.1| AT4G20440 [Arabidopsis thaliana]
Length = 178
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/82 (89%), Positives = 76/82 (92%), Gaps = 2/82 (2%)
Query: 82 ISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQAQPGLAGPVRGVGGPA 141
ISMTVEGPPPPEESRAKA SA+AVAGPGIGRAAGRGVP PLVQAQPGL+GPVRGVGGPA
Sbjct: 1 ISMTVEGPPPPEESRAKAGSAAAVAGPGIGRAAGRGVPTGPLVQAQPGLSGPVRGVGGPA 60
Query: 142 PGMMQPQISRPPIPQLSAPPMT 163
PGMMQPQISRP PQLSAPP+
Sbjct: 61 PGMMQPQISRP--PQLSAPPII 80
>gi|169601382|ref|XP_001794113.1| hypothetical protein SNOG_03555 [Phaeosphaeria nodorum SN15]
gi|160705922|gb|EAT88760.2| hypothetical protein SNOG_03555 [Phaeosphaeria nodorum SN15]
Length = 214
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 87/128 (67%), Gaps = 13/128 (10%)
Query: 4 SKSSKML-QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK----K 58
++ KM+ + INYRM+VT+QDGRQ+VG+ +AFD+HMNLVL D EEFR+ +GK
Sbjct: 6 NRQGKMVSKSINYRMKVTLQDGRQMVGQMLAFDKHMNLVLADTEEFRR-TRRRGKAAPGA 64
Query: 59 NNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE-ESRAKA------VSASAVAGPGIG 111
+ E E+RR +GL ++RG VIS++V+GPPP + +R A +A+ AGPG+
Sbjct: 65 TQSVTETEERRAIGLTIIRGAHVISLSVDGPPPADPAARLGAQPSGTATAATLAAGPGVA 124
Query: 112 RAAGRGVP 119
R AGRG+P
Sbjct: 125 RPAGRGLP 132
>gi|336272660|ref|XP_003351086.1| hypothetical protein SMAC_05965 [Sordaria macrospora k-hell]
Length = 189
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 72/115 (62%), Gaps = 22/115 (19%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
S +K KM +INYRMRVT+ DGRQ+ G+ +AFD+HMNLVL D EEF
Sbjct: 3 STNKQGKMAGYINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADAEEF------------- 49
Query: 62 NEEREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAGPGI 110
R+++RTLGL ++RG +IS++VE PPP + +S ++++ AGPG+
Sbjct: 50 ---RQEKRTLGLTIIRGAHIISLSVESPPPADPSARLGKSTGGGLASALQAGPGV 101
>gi|159125035|gb|EDP50152.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus
fumigatus A1163]
Length = 357
Score = 103 bits (257), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 62/86 (72%), Gaps = 4/86 (4%)
Query: 12 FINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL----PPAKGKKNNTNEERED 67
INYRMR+T+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ PA G N E E+
Sbjct: 130 LINYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGPSNAPLVEAEE 189
Query: 68 RRTLGLVLLRGEEVISMTVEGPPPPE 93
+RTLGL ++RG V+S +V+GPPP E
Sbjct: 190 KRTLGLTIVRGTHVVSCSVDGPPPAE 215
>gi|358058929|dbj|GAA95327.1| hypothetical protein E5Q_01984 [Mixia osmundae IAM 14324]
Length = 187
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 65/99 (65%), Gaps = 8/99 (8%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
MS K KM INYR++VT+ DGR + G +AFD+HMNLVL D EEFR++ K K
Sbjct: 1 MSAKKGGKMTSLINYRLKVTLTDGRSMTGHMLAFDKHMNLVLADTEEFRQIKKKKAAKLA 60
Query: 61 TNEERED--------RRTLGLVLLRGEEVISMTVEGPPP 91
++ ED +RTLGLV+LRGE ++S++VEG PP
Sbjct: 61 AAQDEEDAPEPPQEIKRTLGLVILRGEMIVSISVEGGPP 99
>gi|70994546|ref|XP_752051.1| small nuclear ribonucleoprotein SmB [Aspergillus fumigatus Af293]
gi|66849685|gb|EAL90013.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus
fumigatus Af293]
Length = 357
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 62/86 (72%), Gaps = 4/86 (4%)
Query: 12 FINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL----PPAKGKKNNTNEERED 67
INYRMR+T+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ PA G N E E+
Sbjct: 130 LINYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGPSNAPLVEAEE 189
Query: 68 RRTLGLVLLRGEEVISMTVEGPPPPE 93
+RTLGL ++RG V+S +V+GPPP E
Sbjct: 190 KRTLGLTIVRGTHVVSCSVDGPPPAE 215
>gi|209881614|ref|XP_002142245.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557851|gb|EEA07896.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 155
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 61/89 (68%), Gaps = 6/89 (6%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
M ++INYR+RVT+QD R LVG MAFD+HMN+VL DC+E+R + K + +E +
Sbjct: 1 MQKYINYRVRVTVQDDRMLVGNLMAFDKHMNVVLSDCQEYRSI------KKKGEDLKEVK 54
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESRA 97
R+LG ++LRGE ++++T E PP + R
Sbjct: 55 RSLGFIVLRGENIVTITAEAPPKSQSKRV 83
>gi|452837597|gb|EME39539.1| hypothetical protein DOTSEDRAFT_75264 [Dothistroma septosporum
NZE10]
Length = 206
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 76/126 (60%), Gaps = 15/126 (11%)
Query: 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE-- 63
S K + INYRMR T+ DGRQLVG+ +AFD+HMNLVL +CEEFRK+ K K
Sbjct: 3 SQKQGKMINYRMRATMTDGRQLVGQMLAFDKHMNLVLSECEEFRKVKR-KSKAGGAPGAA 61
Query: 64 ------EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVS------ASAVAGPGIG 111
E E++R LGL ++RG ++S V+GPPP + + S A+ AGPG+
Sbjct: 62 SAAQVIETEEKRMLGLAIVRGATIVSCAVDGPPPADPAARLGQSAPGGPPAALAAGPGMA 121
Query: 112 RAAGRG 117
+ AGRG
Sbjct: 122 KPAGRG 127
>gi|406608027|emb|CCH40654.1| Small nuclear ribonucleoprotein-associated protein [Wickerhamomyces
ciferrii]
Length = 163
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 84/147 (57%), Gaps = 15/147 (10%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR----KLPPAKG 56
+++SK +++ INY ++V D RQ +G+ ++FD+H NLVL D EE+R + K
Sbjct: 4 INVSKKTRLSDLINYTVKVITLDSRQFIGELLSFDKHYNLVLADTEEYRLTKKSVLSLKD 63
Query: 57 KKNNTNEE------REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGP-- 108
+ N +EE +E +RT+GL++LRGE VIS+T+E PP +++R A S V P
Sbjct: 64 RARNKSEESESNLIQEQKRTIGLIILRGEHVISVTIEAPPTNQKARVAAKQGSGVIKPLK 123
Query: 109 ---GIGRAAGRGVPAAPLVQAQPGLAG 132
+ +G+ + A Q PG AG
Sbjct: 124 TNNTTTKPSGQSLTAPVRTQNNPGFAG 150
>gi|396457884|ref|XP_003833555.1| hypothetical protein LEMA_P063160.1 [Leptosphaeria maculans JN3]
gi|312210103|emb|CBX90190.1| hypothetical protein LEMA_P063160.1 [Leptosphaeria maculans JN3]
Length = 210
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 66/94 (70%), Gaps = 5/94 (5%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK----KN 59
++ KM INYRM+VT+QDGRQ+VG+ +AFD+HMNLVL D EEFR+ +GK
Sbjct: 6 NRQGKMQNLINYRMKVTLQDGRQMVGQMLAFDKHMNLVLADTEEFRR-TRRRGKAAPGAT 64
Query: 60 NTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
E E+RR +GL ++RG VIS++V+GPPP +
Sbjct: 65 QQVTETEERRAIGLTIIRGAHVISLSVDGPPPAD 98
>gi|126644035|ref|XP_001388176.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117253|gb|EAZ51353.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 139
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 64/88 (72%), Gaps = 7/88 (7%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
M ++INYR+RVT+QD R +VG MAFDRHMNLVL DC+E+R++ KG+ E +E +
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVK--KGE-----ESKELK 53
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESR 96
R+LGL++LRGE +++ E PP + ++
Sbjct: 54 RSLGLIMLRGENIVTFVAEAPPKNQSTK 81
>gi|294655044|ref|XP_002770075.1| DEHA2B03674p [Debaryomyces hansenii CBS767]
gi|199429645|emb|CAR65445.1| DEHA2B03674p [Debaryomyces hansenii CBS767]
Length = 163
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 83/141 (58%), Gaps = 19/141 (13%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR---KLPPAKGK 57
+S+SK +KM ++YR+R+T D R +G+ +A+D+H+NLVL + EE R K K
Sbjct: 24 LSVSKKTKMSDLVHYRLRITTIDNRNFIGQLLAYDKHLNLVLSETEESRITKKSYQELKK 83
Query: 58 KNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRG 117
N+N E++R+LGL++LRGE+++S+++E PPP + + IG G+G
Sbjct: 84 TQNSNSIVEEKRSLGLIILRGEQIVSLSIESPPPIDTKKR------------IGLEKGKG 131
Query: 118 VPAAPL---VQAQPGLAGPVR 135
+ PL V + L GPV+
Sbjct: 132 I-TKPLKTPVSVKSKLQGPVK 151
>gi|407043715|gb|EKE42107.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 205
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 105/204 (51%), Gaps = 43/204 (21%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
KSSK+ ++INY ++VT +GR VGKF+AFD++MN++L + E R + K T E
Sbjct: 3 CKSSKISKYINYTIKVTTIEGRNFVGKFLAFDKYMNMILSETIEKRTVINKK-----TRE 57
Query: 64 EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRA---KAVSASAV-AGPGIGRAAGRGVP 119
E+E R+LG++LLRG+ + TV PPP + + V+ S + AGP
Sbjct: 58 EKEIERSLGMMLLRGDCIQGYTVLSPPPKRKQQTFVPNVVNTSVITAGP----------- 106
Query: 120 AAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQ 179
QA P L P RGVG P QP + PIP L YP + PPGQ
Sbjct: 107 -----QANPSLVAPTRGVGIP-----QPLMGGIPIPSL------YPQMG-----VVPPGQ 145
Query: 180 MPPP-VYPGQGPPMARGPPPQGPP 202
+P P V PG PPM G P G P
Sbjct: 146 IPVPGVIPGV-PPMIPGAIPPGIP 168
>gi|67475017|ref|XP_653239.1| small nuclear ribonucleoprotein F [Entamoeba histolytica HM-1:IMSS]
gi|56470172|gb|EAL47852.1| small nuclear ribonucleoprotein F, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449707860|gb|EMD47439.1| LSM domain containing protein [Entamoeba histolytica KU27]
Length = 205
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 105/204 (51%), Gaps = 43/204 (21%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
KSSK+ ++INY ++VT +GR VGKF+AFD++MN++L + E R + K T E
Sbjct: 3 CKSSKISKYINYTIKVTTIEGRNFVGKFLAFDKYMNMILSETIEKRTVINKK-----TRE 57
Query: 64 EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRA---KAVSASAV-AGPGIGRAAGRGVP 119
E+E R+LG++LLRG+ + TV PPP + + V+ S + AGP
Sbjct: 58 EKEIERSLGMMLLRGDCIQGYTVLSPPPKRKQQTFVPNVVNTSVITAGP----------- 106
Query: 120 AAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQ 179
QA P L P RGV G+ QP + PIP L YP + PPGQ
Sbjct: 107 -----QANPSLVAPTRGV-----GITQPLMGGIPIPSL------YPQMG-----VVPPGQ 145
Query: 180 MPPP-VYPGQGPPMARGPPPQGPP 202
+P P V PG PPM G P G P
Sbjct: 146 IPVPGVIPGV-PPMIPGAIPPGIP 168
>gi|167395842|ref|XP_001741779.1| small nuclear ribonucleoprotein-associated protein B [Entamoeba
dispar SAW760]
gi|165893541|gb|EDR21755.1| small nuclear ribonucleoprotein-associated protein B, putative
[Entamoeba dispar SAW760]
Length = 205
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 104/202 (51%), Gaps = 43/202 (21%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNE 63
KSSK+ ++INY ++VT +GR VGKF+AFD++MN++L + E R + K T E
Sbjct: 3 CKSSKISKYINYTIKVTTIEGRNFVGKFLAFDKYMNMILSETIEKRTVMNKK-----TRE 57
Query: 64 EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRA---KAVSASAV-AGPGIGRAAGRGVP 119
E+E R+LGL+LLRG+ + TV PPP + + V+ S + AGP
Sbjct: 58 EKEIERSLGLMLLRGDCIQGYTVLSPPPKRKQQNFVPNVVNTSVITAGP----------- 106
Query: 120 AAPLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQ 179
QA P L P RGVG P QP + PIP L YP + PPGQ
Sbjct: 107 -----QANPSLVAPTRGVGIP-----QPMMGGIPIPSL------YPQMG-----VVPPGQ 145
Query: 180 MPPP-VYPGQGPPMARGPPPQG 200
+P P V PG PPM G P G
Sbjct: 146 IPVPGVIPGV-PPMIPGAIPPG 166
>gi|70937084|ref|XP_739397.1| ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|56516366|emb|CAH81154.1| ribonucleoprotein, putative [Plasmodium chabaudi chabaudi]
Length = 141
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 78/129 (60%), Gaps = 14/129 (10%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
M K+ ++ ++ YR+RVTI D R VG F+++DRHMN+VL D EEFR++ K K+NN+
Sbjct: 1 MGKNYRLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRV---KCKENNS- 56
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAP 122
+E +R +GL+L+RG+ ++S T E P ++ + S + GI A GRG+
Sbjct: 57 --KEIKRVVGLILIRGDNIVSFTAERAPVNKK------TTSNITNKGI--ATGRGISLNN 106
Query: 123 LVQAQPGLA 131
V Q +A
Sbjct: 107 YVPMQNNMA 115
>gi|145499845|ref|XP_001435907.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403043|emb|CAK68510.1| unnamed protein product [Paramecium tetraurelia]
Length = 138
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 63/88 (71%), Gaps = 7/88 (7%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
MS+ SK Q+I+YR+R+T+ DGR LVG F+AFD+H+N++L +CEE+R +
Sbjct: 1 MSQKSKFFQWIDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYR-------IRKQGI 53
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPP 90
E E +RTLG++++RG+ +IS++ E PP
Sbjct: 54 HEIETKRTLGMIIVRGDNIISLSAEAPP 81
>gi|84995270|ref|XP_952357.1| small nuclear ribonucleoprotein associated protein b [Theileria
annulata strain Ankara]
gi|65302518|emb|CAI74625.1| small nuclear ribonucleoprotein associated protein b, putative
[Theileria annulata]
Length = 155
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 86/165 (52%), Gaps = 26/165 (15%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
K+++M ++ Y +RVT++D R+ VG +AFD++MNLVL DCEEFR GK N
Sbjct: 4 KNTRMQHWLQYNVRVTLKDNRKFVGTLVAFDKYMNLVLSDCEEFRM---TLGKDKN---R 57
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLV 124
E +RTLG VLLRGE ++S T + P GPG AGRG P
Sbjct: 58 TEVKRTLGFVLLRGENIVSFTAKSP-------VNVPQFGYPMGPGKATPAGRGAPLMVPG 110
Query: 125 QAQPG----------LAGPVRGVGGPAPGMMQPQI---SRPPIPQ 156
QPG L P+RG+ G AP +QPQ + PPIP
Sbjct: 111 MMQPGMPQMPAGGVALQAPMRGLVGSAPAQLQPQNVPGTMPPIPN 155
>gi|145491875|ref|XP_001431936.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399043|emb|CAK64538.1| unnamed protein product [Paramecium tetraurelia]
Length = 126
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 40/88 (45%), Positives = 63/88 (71%), Gaps = 7/88 (7%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
MS+ SK Q+I+YR+R+T+ DGR LVG F+AFD+H+N++L +CEE+R +
Sbjct: 1 MSQKSKFFQWIDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYR-------IRKQGI 53
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPP 90
E E +RTLG++++RG+ +IS++ E PP
Sbjct: 54 HEIETKRTLGMIIVRGDNIISLSAEAPP 81
>gi|259482702|tpe|CBF77432.1| TPA: small nuclear ribonucleoprotein SmB, putative (AFU_orthologue;
AFUA_4G07740) [Aspergillus nidulans FGSC A4]
Length = 196
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 73/111 (65%), Gaps = 8/111 (7%)
Query: 17 MRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLP-PAKGKKNNT-NEEREDRRTLGLV 74
MRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ AK N E E++RTLGL
Sbjct: 1 MRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKAKSAPGNAPLVEAEEKRTLGLT 60
Query: 75 LLRGEEVISMTVEGPPPPEESRAKA------VSASAVAGPGIGRAAGRGVP 119
++RG V+S +V+GPPP + S +A+ AGPGI + AGRG+P
Sbjct: 61 IVRGTHVVSCSVDGPPPADPSARLGGGPSVPAAATLAAGPGISKPAGRGLP 111
>gi|67623475|ref|XP_668020.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|54659204|gb|EAL37793.1| similar to small nuclear ribonucleoprotein [Cryptosporidium
hominis]
Length = 139
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 64/88 (72%), Gaps = 7/88 (7%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDR 68
M ++INYR+RVT+QD R +VG MAFDRHMNLVL DC+E+R++ KG+ E +E +
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVK--KGE-----EPKELK 53
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPEESR 96
R+LGL++LRGE +++ E PP + ++
Sbjct: 54 RSLGLIMLRGENIVTFVAEAPPKNQSTK 81
>gi|71030572|ref|XP_764928.1| small nuclear ribonucleoprotein B [Theileria parva strain Muguga]
gi|68351884|gb|EAN32645.1| small nuclear ribonucleoprotein B, putative [Theileria parva]
Length = 155
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 86/165 (52%), Gaps = 26/165 (15%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
K+++M ++ Y +RVT++D R+ VG +A+D++MNLVL DCEEFR GK N
Sbjct: 4 KNTRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRM---TLGKDKN---R 57
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLV 124
E +RTLG VLLRGE ++S T + P GPG AGRG P
Sbjct: 58 TEVKRTLGFVLLRGENIVSFTAKSP-------VNVPQLGYPMGPGKATPAGRGAPLMVPG 110
Query: 125 QAQPG----------LAGPVRGVGGPAPGMMQPQ---ISRPPIPQ 156
QPG L P+RG+ G AP +QPQ + PP+P
Sbjct: 111 MMQPGMPQMPAGGVALQAPMRGLVGSAPAQLQPQNVPATMPPMPN 155
>gi|238491680|ref|XP_002377077.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus flavus
NRRL3357]
gi|220697490|gb|EED53831.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus flavus
NRRL3357]
Length = 203
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/116 (47%), Positives = 73/116 (62%), Gaps = 12/116 (10%)
Query: 17 MRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLP----PAKGKKNNTNEEREDRRTLG 72
MRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ PA G N E E++RTLG
Sbjct: 1 MRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGPANAPLVESEEKRTLG 60
Query: 73 LVLLRGEEVISMTVEGPPPPEESRAKAVSA--------SAVAGPGIGRAAGRGVPA 120
L ++RG V+S +V+GPPP + S S + AGPGI + AGRG+P
Sbjct: 61 LTIVRGTHVVSCSVDGPPPADPSARLGTSVPGAAAAAATLAAGPGISKPAGRGLPV 116
>gi|403360308|gb|EJY79824.1| Small nuclear ribonucleoprotein B' [Oxytricha trifallax]
gi|403374056|gb|EJY86961.1| Small nuclear ribonucleoprotein B' [Oxytricha trifallax]
Length = 198
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/112 (51%), Positives = 72/112 (64%), Gaps = 7/112 (6%)
Query: 27 LVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMTV 86
LVG F+AFD+HMNLVL D EE+RK+ P K ++ERE +R LGLVLLRGE +++M+
Sbjct: 2 LVGTFIAFDKHMNLVLADTEEYRKIKP----KRPEDKERELKRALGLVLLRGENIVTMSA 57
Query: 87 EGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQA-QPGLAGPVRGV 137
E PP R +A+ GPG + GR V APL Q PGLAGP RGV
Sbjct: 58 EAPPSQPARRIG--EGAAIGGPGKAQPMGRAVQIAPLGQQPAPGLAGPGRGV 107
>gi|68064661|ref|XP_674314.1| ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56492799|emb|CAH97912.1| ribonucleoprotein, putative [Plasmodium berghei]
Length = 194
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 74/129 (57%), Gaps = 14/129 (10%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
M K+ ++ ++ YR+RVTI D R VG F+++DRHMN+VL D EEFR++ KN N
Sbjct: 1 MGKNYRLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRV------KNKEN 54
Query: 63 EEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAP 122
+E +R +GL+L+RG+ ++S T E P ++ + + + GI A GRG+
Sbjct: 55 NFKEIKRVVGLILIRGDNIVSFTAERAPINKK------TMNNITNKGI--ATGRGIALNN 106
Query: 123 LVQAQPGLA 131
V Q +
Sbjct: 107 YVPMQNNMT 115
>gi|312068333|ref|XP_003137165.1| hypothetical protein LOAG_01578 [Loa loa]
Length = 152
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 65/100 (65%), Gaps = 4/100 (4%)
Query: 17 MRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLL 76
M+V + D R VG F AFD+HMN++L DCEE R++ P GKK EE +RTLGLVLL
Sbjct: 1 MKVVLLDSRTFVGYFKAFDKHMNILLCDCEELRRIKPKPGKKIAEGEE---KRTLGLVLL 57
Query: 77 RGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGR 116
RGE ++SMTV+ E+S+ + A + GPG + AGR
Sbjct: 58 RGEHIVSMTVQSNEQDEDSKQQG-KAGNIGGPGAAKPAGR 96
>gi|361131697|gb|EHL03349.1| putative Small nuclear ribonucleoprotein-associated protein B
[Glarea lozoyensis 74030]
Length = 163
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 80/129 (62%), Gaps = 17/129 (13%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN- 62
+K KM INYRMRVT+ DGRQ+VG+ +AFD+HMNLVL D EEFR++ K K++T
Sbjct: 3 NKQGKMAGLINYRMRVTMNDGRQMVGQMLAFDKHMNLVLADTEEFRRVKR-KAPKSSTAP 61
Query: 63 ---------EEREDRRTLGLVLLRGEEVISMTVEGPPPPE------ESRAKAVSASAVAG 107
E E++RTLGL ++RG +IS++VE PPP + S +++ AG
Sbjct: 62 GASSTSAPLVESEEKRTLGLTIVRGAHIISLSVESPPPADPAARLGASAPGGAASALSAG 121
Query: 108 PGIGRAAGR 116
GI R AGR
Sbjct: 122 AGIARPAGR 130
>gi|388858132|emb|CCF48200.1| related to small nuclear ribonucleoprotein associated protein b
[Ustilago hordei]
Length = 228
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 68/118 (57%), Gaps = 26/118 (22%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAK--------- 55
K KM+ INYR+R+T+ D RQ+VG+ +AFD HMNLVL D +E+RK+ K
Sbjct: 7 KGGKMMSLINYRLRITLNDSRQIVGQLLAFDAHMNLVLADSQEYRKIKSRKAKARAAAAS 66
Query: 56 ----------------GKKNNT-NEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESR 96
G ++ + +E +RTLGL++LRGE ++SM +E PPP ++ R
Sbjct: 67 TAGNAAVQDEDDEDDVGASSSAPDAIQEQKRTLGLLILRGENIVSMAIEAPPPADDRR 124
>gi|343424946|emb|CBQ68483.1| related to small nuclear ribonucleoprotein associated protein b
[Sporisorium reilianum SRZ2]
Length = 228
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 76/144 (52%), Gaps = 31/144 (21%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
K KM+ INYR+R+T+ D RQ+VG+ +AFD HMNLVL D +E+RK+ K K
Sbjct: 7 KGGKMMSLINYRLRITLNDSRQIVGQLLAFDAHMNLVLADSQEYRKIKSRKAKAKAAAAA 66
Query: 65 R---------------------------EDRRTLGLVLLRGEEVISMTVEGPPPPEESRA 97
+ E +RTLGL++LRGE ++SM +E PPP ++ +
Sbjct: 67 KAGKAAVEEDDDDDQDAAASAGAPDAILEQKRTLGLLILRGENIVSMAIEAPPPADDRK- 125
Query: 98 KAVSASAVAGPGIGRAAGRGVPAA 121
A+ GPG G GRG+ A
Sbjct: 126 ---QATMQPGPGKGAPMGRGMGLA 146
>gi|71019611|ref|XP_760036.1| hypothetical protein UM03889.1 [Ustilago maydis 521]
gi|46099829|gb|EAK85062.1| hypothetical protein UM03889.1 [Ustilago maydis 521]
Length = 232
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 76/144 (52%), Gaps = 31/144 (21%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
K KM+ INYR+R+T+ D RQ+VG+ +AFD HMNLVL D +E+RK+ K K
Sbjct: 7 KGGKMMSLINYRLRITLNDSRQIVGQLLAFDAHMNLVLADSQEYRKVKSRKAKARAAAAS 66
Query: 65 R---------------------------EDRRTLGLVLLRGEEVISMTVEGPPPPEESRA 97
+ E +RTLGL++LRGE ++SM +E PPP ++ +
Sbjct: 67 KSAKSGVQDEDEDDDDAAAASGAPDAVLEQKRTLGLLILRGENIVSMAIEAPPPTDDRK- 125
Query: 98 KAVSASAVAGPGIGRAAGRGVPAA 121
A+ GPG G GRG+ A
Sbjct: 126 ---QATMQPGPGKGAPMGRGMGLA 146
>gi|198419524|ref|XP_002123396.1| PREDICTED: similar to small nuclear ribonucleoprotein polypeptides
B and B1 isoform 2 [Ciona intestinalis]
Length = 146
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 77/126 (61%), Gaps = 9/126 (7%)
Query: 23 DGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVI 82
DGR +G F AFD+HMNL+L DC+EFR++ P KG + RE++RTLGLVLLRGE ++
Sbjct: 2 DGRVFIGTFKAFDKHMNLILVDCDEFRRVRPKKGATD-----REEKRTLGLVLLRGEHLV 56
Query: 83 SMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPLVQAQPGLAGPVRGVGGPAP 142
SM+VEGPPP + V GP G+ G PGL GP+ GVGGP P
Sbjct: 57 SMSVEGPPP--SGKGMGVPGGITRGP--GQGRAAGRGMGGPGGPAPGLHGPMHGVGGPPP 112
Query: 143 GMMQPQ 148
G M PQ
Sbjct: 113 GSMAPQ 118
>gi|367001350|ref|XP_003685410.1| hypothetical protein TPHA_0D03410 [Tetrapisispora phaffii CBS 4417]
gi|357523708|emb|CCE62976.1| hypothetical protein TPHA_0D03410 [Tetrapisispora phaffii CBS 4417]
Length = 179
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 67/100 (67%), Gaps = 10/100 (10%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR-------KLPP 53
+S+ ++SK+ INYR+RV +DG+ +G+ MAFD+HMN+VLGDC E R K+
Sbjct: 8 VSVKQNSKLRNLINYRIRVVTKDGKLYLGELMAFDKHMNVVLGDCVEERISKQQLQKIIQ 67
Query: 54 AKGKKNNTNEE---REDRRTLGLVLLRGEEVISMTVEGPP 90
+GK++ + E + ++R LGLV+LRGE+++S VE P
Sbjct: 68 NRGKQDTSKENNVIKTEKRVLGLVILRGEQILSTVVEDKP 107
>gi|448122802|ref|XP_004204535.1| Piso0_000386 [Millerozyma farinosa CBS 7064]
gi|448125081|ref|XP_004205093.1| Piso0_000386 [Millerozyma farinosa CBS 7064]
gi|358249726|emb|CCE72792.1| Piso0_000386 [Millerozyma farinosa CBS 7064]
gi|358350074|emb|CCE73353.1| Piso0_000386 [Millerozyma farinosa CBS 7064]
Length = 122
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 59/86 (68%), Gaps = 3/86 (3%)
Query: 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR---KLPPAKGKKNNTNEER 65
M I+YR+RV D R VG+F+AFD+HMNLVL D EE R K + +NTN
Sbjct: 1 MSDLIHYRLRVNTIDNRDFVGQFLAFDKHMNLVLSDTEESRITKKSYQELKRTHNTNSIV 60
Query: 66 EDRRTLGLVLLRGEEVISMTVEGPPP 91
E++R+LGLV+LRGE+++++++E PP
Sbjct: 61 EEKRSLGLVILRGEQIVNISIESAPP 86
>gi|443897464|dbj|GAC74804.1| hypothetical protein PANT_13d00005 [Pseudozyma antarctica T-34]
Length = 192
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 63/114 (55%), Gaps = 24/114 (21%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
K KM+ INYR+R+T+ D RQ+VG+ +AFD HMNLVL D +E+RK+ K K
Sbjct: 7 KGGKMMSLINYRLRITLNDSRQIVGQLLAFDAHMNLVLADSQEYRKIKSRKAKARAAAAA 66
Query: 65 R------------------------EDRRTLGLVLLRGEEVISMTVEGPPPPEE 94
E +RTLGL++LRGE ++SM +E PPP ++
Sbjct: 67 EAGKATAEDDEDDDAAMAGAADAVLEQKRTLGLLILRGEHIVSMAIEAPPPADD 120
>gi|254567097|ref|XP_002490659.1| Small nuclear ribonucleoprotein-associated protein [Komagataella
pastoris GS115]
gi|238030455|emb|CAY68379.1| Small nuclear ribonucleoprotein-associated protein [Komagataella
pastoris GS115]
gi|328351045|emb|CCA37445.1| Small nuclear ribonucleoprotein-associated protein B [Komagataella
pastoris CBS 7435]
Length = 153
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 82/149 (55%), Gaps = 27/149 (18%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR--KLPPAKGKKN 59
S+SK +K+ + Y +RV D RQLVG+ ++FD+HMNLV+ + EEFR K A+ KK
Sbjct: 3 SLSKRTKLASLVGYHIRVYTVDSRQLVGELISFDKHMNLVISETEEFRVTKKSYAQLKKQ 62
Query: 60 ---------NTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGI 110
+ + +E +R+LGL++LRGE ++S+++EG P + G I
Sbjct: 63 AQQKAGQPLDESNIQETKRSLGLIILRGEHIVSVSIEGKPNTHQ------------GSRI 110
Query: 111 GRAAGRGVPAAPLV----QAQPGLAGPVR 135
+ G+P A V +A+P L P++
Sbjct: 111 NISNSGGIPEAKGVIRPLKAEPALTKPIK 139
>gi|171696276|ref|XP_001913062.1| hypothetical protein [Podospora anserina S mat+]
gi|170948380|emb|CAP60544.1| unnamed protein product [Podospora anserina S mat+]
Length = 197
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%), Gaps = 14/108 (12%)
Query: 17 MRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGK--------KNNTNEEREDR 68
MRVT+ DGRQ+ G+ +AFD+HMNLVL D EEFR++ + K E+E++
Sbjct: 1 MRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRIKRKQNKPSAPGASSSGAQTIEQEEK 60
Query: 69 RTLGLVLLRGEEVISMTVEGPPPPE-ESRAK-----AVSASAVAGPGI 110
RTLGL ++RG ++S++VE PPP + +R +V+++ AGPG+
Sbjct: 61 RTLGLTIVRGAHIVSLSVESPPPADPSARLGKTGGPSVASALAAGPGV 108
>gi|344233517|gb|EGV65389.1| Sm-like ribonucleo protein [Candida tenuis ATCC 10573]
Length = 131
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR--KLPPAKGKKNN 60
++K +KM + ++YR++V+ DGR +G +AFD+HMNLVL DCEE R K KK
Sbjct: 6 ITKKTKMSELLHYRLKVSSIDGRSFIGNLLAFDKHMNLVLSDCEEVRIPKKSLQDLKKGV 65
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPP 90
E RE + LGL++LRG++++++T++ PP
Sbjct: 66 ATEPRELKTNLGLIILRGDQIVNLTIQSPP 95
>gi|164658189|ref|XP_001730220.1| hypothetical protein MGL_2602 [Malassezia globosa CBS 7966]
gi|159104115|gb|EDP43006.1| hypothetical protein MGL_2602 [Malassezia globosa CBS 7966]
Length = 194
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 35/153 (22%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKL------------ 51
+K +M+ I+YR+RVT+ DGRQ+ G+ +AFD HMNLVL + EEFR++
Sbjct: 6 AKGGRMMALIDYRLRVTLNDGRQMTGQLLAFDTHMNLVLSNAEEFRRIKPKKKKTQKANK 65
Query: 52 -------PPAKGKKNNTNEE----------REDRRTLGLVLLRGEEVISMTVEGPPPPEE 94
A G+ + EE +E +RTLGL++LRGE +IS++V+ PPPE
Sbjct: 66 KQKVSHGDTAAGQAHIDEEEDDDDEPLPPVQEQKRTLGLIILRGETIISISVDA-PPPES 124
Query: 95 SRAKAVSASAVAGPGIGRAAGRGVP--AAPLVQ 125
R V A GPG G GRG A P+V+
Sbjct: 125 KRDMPVMAP---GPGRGVPTGRGAAMGAVPMVR 154
>gi|146414842|ref|XP_001483391.1| hypothetical protein PGUG_04120 [Meyerozyma guilliermondii ATCC
6260]
gi|146391864|gb|EDK40022.1| hypothetical protein PGUG_04120 [Meyerozyma guilliermondii ATCC
6260]
Length = 122
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 71/116 (61%), Gaps = 8/116 (6%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE--FRKLPPAKGKK 58
M++SK +KM ++YR+RV+ DGR G+ +AFD H+NLVL + EE F K + KK
Sbjct: 1 MNVSKKTKMSDLLHYRLRVSSIDGRSFTGELLAFDGHLNLVLANAEEGRFTKKAVQELKK 60
Query: 59 NNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAA 114
N+ E +R+LGLV+LRGE+++ +++E PPP +V+ G G +A
Sbjct: 61 NSAERPTEQKRSLGLVILRGEQIVGLSIESPPPT------SVTERLEKGTGTTKAV 110
>gi|260949819|ref|XP_002619206.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC 42720]
gi|238846778|gb|EEQ36242.1| hypothetical protein CLUG_00365 [Clavispora lusitaniae ATCC 42720]
Length = 164
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 63/98 (64%), Gaps = 5/98 (5%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP-----AK 55
+S++K +KM IN+R++++ DGR G+ +AFD+HMNLVL D EE R AK
Sbjct: 36 VSVTKKTKMADLINFRLQISTLDGRSFTGQLLAFDKHMNLVLADTEEARTTKKSYQELAK 95
Query: 56 GKKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPE 93
K + + ED+R LGL++LRGE+V+S+ ++ P +
Sbjct: 96 AKVGSQVKVNEDKRFLGLIILRGEQVVSVVIKSGPTAD 133
>gi|296084434|emb|CBI24993.3| unnamed protein product [Vitis vinifera]
Length = 208
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/40 (97%), Positives = 40/40 (100%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNL 40
MSMSKSSKMLQ+INYRMRVTIQDGRQLVGKFMAFDRHMNL
Sbjct: 1 MSMSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNL 40
>gi|221501686|gb|EEE27450.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii VEG]
Length = 150
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 58/78 (74%), Gaps = 6/78 (7%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP----AKGKKN 59
SK++++ Q+INYR+RV +QD R LVG +AFDRHMN+VL D EEFRKL A GK
Sbjct: 44 SKNARLQQWINYRIRVCLQDSRMLVGSLLAFDRHMNIVLADAEEFRKLKIRHKLADGK-- 101
Query: 60 NTNEEREDRRTLGLVLLR 77
+ EE+E +R++GL+++R
Sbjct: 102 HQTEEKEVKRSVGLMMIR 119
>gi|403215910|emb|CCK70408.1| hypothetical protein KNAG_0E01440 [Kazachstania naganishii CBS
8797]
Length = 165
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 64/92 (69%), Gaps = 2/92 (2%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR--KLPPAKGKK 58
+S+ ++S++ INY++RV QDGR +G+ +AFD+HMNLVL +C E R K K ++
Sbjct: 4 VSVKQNSQLPDLINYKLRVLTQDGRSYIGEMLAFDKHMNLVLNECVEERIPKSQQMKIRQ 63
Query: 59 NNTNEEREDRRTLGLVLLRGEEVISMTVEGPP 90
NT + + ++R LGL +LRGE+++S TVE P
Sbjct: 64 GNTKDVKIEKRVLGLTILRGEQILSTTVEDTP 95
>gi|221480965|gb|EEE19379.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii GT1]
Length = 236
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 58/78 (74%), Gaps = 6/78 (7%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP----AKGKKN 59
SK++++ Q+INYR+RV +QD R LVG +AFDRHMN+VL D EEFRKL A GK
Sbjct: 44 SKNARLQQWINYRIRVCLQDSRMLVGSLLAFDRHMNIVLADAEEFRKLKIRHKLADGK-- 101
Query: 60 NTNEEREDRRTLGLVLLR 77
+ EE+E +R++GL+++R
Sbjct: 102 HQTEEKEVKRSVGLMMIR 119
>gi|126138766|ref|XP_001385906.1| hypothetical protein PICST_32971 [Scheffersomyces stipitis CBS
6054]
gi|126093184|gb|ABN67877.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 142
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 66/97 (68%), Gaps = 6/97 (6%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR--KLPPAKGKKNN 60
++K++KM I+YR++++ D R +G +AFD+H+NLVL D EE R K KK+
Sbjct: 6 ITKTTKMSDLIHYRLKISTIDNRFFIGSLLAFDKHLNLVLSDTEETRITKKSIVSMKKSA 65
Query: 61 TNEERE----DRRTLGLVLLRGEEVISMTVEGPPPPE 93
++ + D+R+LGL++LRGE+++S+++E PPP +
Sbjct: 66 GSDGKHDPTFDKRSLGLIILRGEQIVSLSIESPPPLD 102
>gi|237844907|ref|XP_002371751.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii ME49]
gi|211969415|gb|EEB04611.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii ME49]
Length = 236
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/78 (52%), Positives = 58/78 (74%), Gaps = 6/78 (7%)
Query: 4 SKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP----AKGKKN 59
SK++++ Q+INYR+RV +QD R LVG +AFDRHMN+VL D EEFRKL A GK
Sbjct: 44 SKNARLQQWINYRIRVCLQDSRMLVGSLLAFDRHMNIVLADAEEFRKLKIRHKLADGK-- 101
Query: 60 NTNEEREDRRTLGLVLLR 77
+ EE+E +R++GL+++R
Sbjct: 102 HQTEEKEVKRSVGLMMIR 119
>gi|410083152|ref|XP_003959154.1| hypothetical protein KAFR_0I02400 [Kazachstania africana CBS 2517]
gi|372465744|emb|CCF60019.1| hypothetical protein KAFR_0I02400 [Kazachstania africana CBS 2517]
Length = 171
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 7/95 (7%)
Query: 3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTN 62
+ ++S++ INYR+RV QDGR +G+ +AFD+HMNL+L DC E R + K T+
Sbjct: 7 VKQNSRLSDLINYRLRVIAQDGRVYIGELLAFDKHMNLILNDCVEERIPKTQQNKIRKTS 66
Query: 63 EERE-------DRRTLGLVLLRGEEVISMTVEGPP 90
+++ ++RTLGL++LRGE V+S +E P
Sbjct: 67 DDKMLKEAVKIEKRTLGLIILRGEHVLSTVIEDKP 101
>gi|398364369|ref|NP_010946.3| Smb1p [Saccharomyces cerevisiae S288c]
gi|731447|sp|P40018.1|RSMB_YEAST RecName: Full=Small nuclear ribonucleoprotein-associated protein B;
Short=snRNP-B; AltName: Full=Sm protein B; Short=Sm-B;
Short=SmB
gi|603621|gb|AAB64562.1| Yer029cp [Saccharomyces cerevisiae]
gi|45270790|gb|AAS56776.1| YER029C [Saccharomyces cerevisiae]
gi|151944739|gb|EDN62998.1| Sm B [Saccharomyces cerevisiae YJM789]
gi|190405591|gb|EDV08858.1| small nuclear ribonucleoprotein associated protein B [Saccharomyces
cerevisiae RM11-1a]
gi|207346002|gb|EDZ72630.1| YER029Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259145937|emb|CAY79197.1| Smb1p [Saccharomyces cerevisiae EC1118]
gi|285811654|tpg|DAA07682.1| TPA: Smb1p [Saccharomyces cerevisiae S288c]
gi|349577687|dbj|GAA22855.1| K7_Smb1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299719|gb|EIW10811.1| Smb1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 196
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 8/98 (8%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR-------KLPP 53
+ ++ SS++ I+Y++RV QDGR +G+ MAFD+HMNLVL +C E R KL P
Sbjct: 4 IQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRP 63
Query: 54 AKGKKNNTNEE-REDRRTLGLVLLRGEEVISMTVEGPP 90
K K+ T + ++R LGL +LRGE+++S VE P
Sbjct: 64 RKDSKDGTTLNIKVEKRVLGLTILRGEQILSTVVEDKP 101
>gi|256271132|gb|EEU06225.1| Smb1p [Saccharomyces cerevisiae JAY291]
Length = 196
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 8/98 (8%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR-------KLPP 53
+ ++ SS++ I+Y++RV QDGR +G+ MAFD+HMNLVL +C E R KL P
Sbjct: 4 IQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRP 63
Query: 54 AKGKKNNTNEE-REDRRTLGLVLLRGEEVISMTVEGPP 90
K K+ T + ++R LGL +LRGE+++S VE P
Sbjct: 64 RKDSKDGTTLNIKVEKRVLGLTILRGEQILSTVVEDKP 101
>gi|401839459|gb|EJT42681.1| SMB1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 196
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 59/92 (64%), Gaps = 8/92 (8%)
Query: 7 SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR-------KLPPAKGKKN 59
S++ I+Y++RV QDGR +G+ MAFD+HMNLVL +C E R KL P K KN
Sbjct: 10 SRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRPKKDSKN 69
Query: 60 NTNEE-REDRRTLGLVLLRGEEVISMTVEGPP 90
T+ + ++R LGL +LRGE+++S VE P
Sbjct: 70 GTSLNIKVEKRVLGLTILRGEQILSTLVEDKP 101
>gi|50303233|ref|XP_451558.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640690|emb|CAH01951.1| KLLA0B00627p [Kluyveromyces lactis]
Length = 191
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 5/91 (5%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRK-----LPPAKGKKN 59
K +K+ I+YR+RV DGR +G+ MAFD +MNLV+GDC E R + K N
Sbjct: 9 KETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEERMPHKQIIEVLKSGGN 68
Query: 60 NTNEEREDRRTLGLVLLRGEEVISMTVEGPP 90
++ + +RRT GL++LRGE V+S +VE PP
Sbjct: 69 LSSNVQVERRTFGLIILRGEHVLSTSVESPP 99
>gi|323333917|gb|EGA75306.1| Smb1p [Saccharomyces cerevisiae AWRI796]
Length = 112
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 8/98 (8%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR-------KLPP 53
+ ++ SS++ I+Y++RV QDGR +G+ MAFD+HMNLVL +C E R KL P
Sbjct: 4 IQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRP 63
Query: 54 AKGKKNNTNEE-REDRRTLGLVLLRGEEVISMTVEGPP 90
K K+ T + ++R LGL +LRGE+++S VE P
Sbjct: 64 RKDSKDGTTLNIKVEKRVLGLTILRGEQILSTVVEDKP 101
>gi|363748110|ref|XP_003644273.1| hypothetical protein Ecym_1209 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887905|gb|AET37456.1| hypothetical protein Ecym_1209 [Eremothecium cymbalariae
DBVPG#7215]
Length = 161
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++S S + INYR+RV QDGR +G +AFD HMNLVL DC E R LP + K
Sbjct: 5 TVSDKSTLKDLINYRLRVLAQDGRVYIGLLLAFDAHMNLVLADCIEER-LPEQQLKTLQH 63
Query: 62 NEERE---DRRTLGLVLLRGEEVISMTVEGPPP-PEESRAKA 99
+ + +RTLGL +LRGE V+S VE PP + RA A
Sbjct: 64 DPKHLPKPQKRTLGLAILRGEHVLSTLVESPPTLTKRERAHA 105
>gi|302308391|ref|NP_985287.2| AER432Cp [Ashbya gossypii ATCC 10895]
gi|299789433|gb|AAS53111.2| AER432Cp [Ashbya gossypii ATCC 10895]
gi|374108513|gb|AEY97420.1| FAER432Cp [Ashbya gossypii FDAG1]
Length = 148
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT 61
++S S + I+Y++RV QDGR VG +AFD HMNLVL DC E R L +
Sbjct: 4 TVSHRSTLKDLIDYKLRVLSQDGRVYVGTLLAFDAHMNLVLADCVEER-LSDHHVRNLQK 62
Query: 62 NEERE---DRRTLGLVLLRGEEVISMTVEGPP 90
+ + +RR LGL +LRGE V++ VE PP
Sbjct: 63 DHAQRPQPERRVLGLTILRGEHVLTTLVESPP 94
>gi|225562378|gb|EEH10657.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 201
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 59/99 (59%), Gaps = 16/99 (16%)
Query: 37 HMNLVLGDCEEFRKLPPAKGKKNN-------TNEEREDRRTLGLVLLRGEEVISMTVEGP 89
HMNLVL D EEFR++ K T E E++RTLGL +LRG +V+S +V+GP
Sbjct: 10 HMNLVLADTEEFRRVKKKSTKSTQAPGSSTPTLVEAEEKRTLGLTILRGTQVVSCSVDGP 69
Query: 90 PPPE-ESR--------AKAVSASAVAGPGIGRAAGRGVP 119
PP + +R + A +A+ AGPGI R AGRG+P
Sbjct: 70 PPADPAARLGTTVPGASGASAATLAAGPGISRPAGRGLP 108
>gi|355737405|gb|AES12306.1| small nuclear ribonucleoparticle-associated protein [Mustela
putorius furo]
Length = 89
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/93 (61%), Positives = 67/93 (72%), Gaps = 5/93 (5%)
Query: 44 DCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSAS 103
DC+EFRK+ P KN ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A
Sbjct: 1 DCDEFRKIKP----KNAKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAG 56
Query: 104 AVAGPGIGRAAGRGVPA-APLVQAQPGLAGPVR 135
A GPG+GRAAGRGVPA P+ QA GLAGPVR
Sbjct: 57 AAGGPGVGRAAGRGVPAGVPIPQAPAGLAGPVR 89
>gi|346322411|gb|EGX92010.1| small nuclear ribonucleoprotein SmB, putative [Cordyceps militaris
CM01]
Length = 201
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 66/111 (59%), Gaps = 13/111 (11%)
Query: 29 GKFMAFDRHMNLVLGDCEEFRKLPPAKGKK----NNTNEEREDRRTLGLVLLRGEEVISM 84
GK + HMNLVL D EEFR++ + + + E E++RTLGL ++RG ++S+
Sbjct: 6 GKMAGY--HMNLVLADTEEFRRVKRRQDRSAPGAGGSLVESEEKRTLGLTIVRGAYIVSL 63
Query: 85 TVEGPPPPE------ESRAKAVSASAVAGPGIGRAAGRGVPAAPL-VQAQP 128
+VE PPP + +S ++++ AGPG+ + AGRG PA L V+ QP
Sbjct: 64 SVESPPPADPSARLGKSAPGGIASALSAGPGVAKPAGRGAPAPSLAVRNQP 114
>gi|302662762|ref|XP_003023032.1| hypothetical protein TRV_02854 [Trichophyton verrucosum HKI 0517]
gi|291187008|gb|EFE42414.1| hypothetical protein TRV_02854 [Trichophyton verrucosum HKI 0517]
Length = 171
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 58/99 (58%), Gaps = 17/99 (17%)
Query: 38 MNLVLGDCEEFRKLPPAKGK-------KNNTN--EEREDRRTLGLVLLRGEEVISMTVEG 88
MNLVL D EEFR++ GK ++T E E++RTLGL ++RG V+S +V+G
Sbjct: 1 MNLVLADTEEFRRVKKKSGKGGQAAPGSSSTTPLVEAEEKRTLGLTIVRGTHVVSCSVDG 60
Query: 89 PPPPE-ESRAKAV-------SASAVAGPGIGRAAGRGVP 119
PPP E +R SA+ AGPGI + AGRG+P
Sbjct: 61 PPPAEPAARLGTTAAGLAGGSATLAAGPGISKPAGRGLP 99
>gi|322696843|gb|EFY88629.1| eukaryotic Sm and Sm-like (LSm) protein [Metarhizium acridum CQMa
102]
Length = 172
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 11/93 (11%)
Query: 38 MNLVLGDCEEFRKLPPAKGK-----KNNTNEEREDRRTLGLVLLRGEEVISMTVEGPPPP 92
MNLVL D EEFR++ K ++ E E++RTLGL ++RG ++S++VE PPP
Sbjct: 1 MNLVLADTEEFRRVKRKANKPSAPGSSSQVVETEEKRTLGLTIVRGAHIVSLSVESPPPA 60
Query: 93 EESRAKAVSA------SAVAGPGIGRAAGRGVP 119
+ S SA + AGPG+ + AGRG P
Sbjct: 61 DPSARLGKSAPSGIPSTLTAGPGVAKPAGRGAP 93
>gi|147856959|emb|CAN79648.1| hypothetical protein VITISV_010851 [Vitis vinifera]
Length = 295
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/63 (63%), Positives = 45/63 (71%), Gaps = 6/63 (9%)
Query: 129 GLAGPVRGVGGPAPGMMQPQISRPPIPQLSAPPMTYPATSGGPPVIRPPGQMPPPVYPGQ 188
GL GP+RGVGG A G+MQP+IS P +PQLS PPMT+PA PV RPPGQ YPGQ
Sbjct: 152 GLVGPIRGVGGLALGVMQPRISHPLMPQLSIPPMTHPAA----PVTRPPGQTLG--YPGQ 205
Query: 189 GPP 191
PP
Sbjct: 206 VPP 208
>gi|222636495|gb|EEE66627.1| hypothetical protein OsJ_23216 [Oryza sativa Japonica Group]
Length = 190
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/35 (80%), Positives = 29/35 (82%), Gaps = 2/35 (5%)
Query: 32 MAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEERE 66
MAFDRHMNLVLGDCEEFRKLPP+K K T ERE
Sbjct: 1 MAFDRHMNLVLGDCEEFRKLPPSKSSK--TTGERE 33
>gi|380016910|ref|XP_003692411.1| PREDICTED: rho-related protein racA-like [Apis florea]
Length = 272
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 36/52 (69%), Gaps = 7/52 (13%)
Query: 107 GPGIGRAAGRGVPAAPLVQAQP-GLAGPVRGVGGPAPGMMQP----QISRPP 153
GPG+GRAAGRG+PA V P GL GPVRGVGGP+ +M P Q+S PP
Sbjct: 158 GPGMGRAAGRGMPAN--VAGVPAGLQGPVRGVGGPSQQIMTPGGRGQVSAPP 207
>gi|119631004|gb|EAX10599.1| small nuclear ribonucleoprotein polypeptides B and B1, isoform
CRA_d [Homo sapiens]
Length = 152
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 84 MTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA-APLVQAQPGLAGPVRGVGGPAP 142
MTVEGPPP + A+ A A GPGIGRAAGRG+PA P+ QA GLAGPVRGVGGP+
Sbjct: 1 MTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQ 60
Query: 143 GMMQPQ 148
+M PQ
Sbjct: 61 QVMTPQ 66
>gi|194375071|dbj|BAG62648.1| unnamed protein product [Homo sapiens]
Length = 155
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 84 MTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA-APLVQAQPGLAGPVRGVGGPAP 142
MTVEGPPP + A+ A A GPGIGRAAGRG+PA P QA GLAGPVRGVGGP+
Sbjct: 1 MTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPTPQAPAGLAGPVRGVGGPSQ 60
Query: 143 GMMQPQ 148
+M PQ
Sbjct: 61 QVMTPQ 66
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,436,954,995
Number of Sequences: 23463169
Number of extensions: 418800888
Number of successful extensions: 6431349
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 24157
Number of HSP's successfully gapped in prelim test: 95410
Number of HSP's that attempted gapping in prelim test: 3038494
Number of HSP's gapped (non-prelim): 1184083
length of query: 286
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 145
effective length of database: 9,050,888,538
effective search space: 1312378838010
effective search space used: 1312378838010
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 76 (33.9 bits)