BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023166
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B' OS=Macropus
eugenii GN=SNRPB PE=2 SV=1
Length = 240
Score = 181 bits (458), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ + A GPGIGRAAGRGVPA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLSGAAGGPGIGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' OS=Gallus
gallus GN=SNRPB PE=2 SV=1
Length = 240
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/149 (62%), Positives = 113/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPG+GRAAGRGVPA
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
AP+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GAPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B'
OS=Homo sapiens GN=SNRPB PE=1 SV=2
Length = 240
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus
europaeus GN=SNRPB PE=2 SV=1
Length = 240
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B OS=Mus
musculus GN=Snrpb PE=1 SV=1
Length = 231
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>sp|Q58DW4|RSMB_BOVIN Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus
GN=SNRPB PE=2 SV=1
Length = 240
Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/149 (61%), Positives = 112/149 (75%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+YRMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGPVRGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPVRGVGGPSQQVMTPQ 145
>sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B'
OS=Monodelphis domestica GN=SNRPB PE=2 SV=1
Length = 240
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 91/149 (61%), Positives = 111/149 (74%), Gaps = 5/149 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ KSSKMLQ I+ RMR +QDGR +G F AFD+HMNL+L DC+EFRK+ P KN+
Sbjct: 1 MTVGKSSKMLQHIDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LGLVLLRGE ++SMTVEGPPP + A+ A A GPGIGRAAGRGVPA
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGVPA 116
Query: 121 -APLVQAQPGLAGPVRGVGGPAPGMMQPQ 148
P+ QA GLAGP+RGVGGP+ +M PQ
Sbjct: 117 GVPMPQAPAGLAGPIRGVGGPSQQVMTPQ 145
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/147 (57%), Positives = 103/147 (70%), Gaps = 18/147 (12%)
Query: 5 KSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEE 64
KSSKMLQ+INYRMRVTIQDGR +VG+F+AFD+HMN+V+ D EEFR++ KGK E+
Sbjct: 6 KSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQ-KGK-----ED 59
Query: 65 REDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAV-----AGPGIGRAAGR--- 116
RE++RTLG++L+RGE V+SM+VE PPP E AK + S + GPGIGRA GR
Sbjct: 60 REEKRTLGMILIRGETVVSMSVEAPPPEE---AKLAATSKMPPQIPGGPGIGRAVGRGMP 116
Query: 117 -GVPAAPLVQAQPGLAGPVRGVGGPAP 142
G GL GPVRGVGGPAP
Sbjct: 117 MGGMGMGGSGPMSGLTGPVRGVGGPAP 143
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B OS=Drosophila
melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/162 (53%), Positives = 109/162 (67%), Gaps = 6/162 (3%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++ K++KM+Q +NYR+R+ +QD R +G F AFD+HMNL+LGDCEEFRK+ KN+
Sbjct: 1 MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIR----SKNS 56
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA 120
ERE++R LG VLLRGE ++S+TVEGPPPPEE + A GPGIGR AGRG+P
Sbjct: 57 KVPEREEKRVLGFVLLRGENIVSLTVEGPPPPEEGLPRVPIPGAAPGPGIGRVAGRGMPI 116
Query: 121 APLVQAQPGLAGPVRGVGGPAPGMMQPQ-ISRPPIPQLSAPP 161
L GL GPVRGVGGPA M P P P + APP
Sbjct: 117 N-LSAVPAGLQGPVRGVGGPAQQHMAPMGRGVPRAPMMGAPP 157
>sp|Q10163|RSMB_SCHPO Small nuclear ribonucleoprotein-associated protein B
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smb1 PE=1 SV=1
Length = 147
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/139 (48%), Positives = 95/139 (68%), Gaps = 14/139 (10%)
Query: 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN--TNE 63
++KM+ +N+ + VT +DGR VG+ +AFD MNLVL DC+E+R + KK N +N
Sbjct: 3 TTKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHI-----KKQNVPSNS 57
Query: 64 EREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPAAPL 123
E++R LGLV+LRGE ++S++V+GPPP + S + S ++GPG+ R AGRG+ PL
Sbjct: 58 VYEEKRMLGLVILRGEFIVSLSVQGPPPMDPS----MRGSLLSGPGVARPAGRGI---PL 110
Query: 124 VQAQPGLAGPVRGVGGPAP 142
QA GLAGPVRGVG AP
Sbjct: 111 GQAPVGLAGPVRGVGYTAP 129
>sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein-associated protein B (Fragment)
OS=Rattus norvegicus GN=Snrpb PE=2 SV=1
Length = 214
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/131 (59%), Positives = 97/131 (74%), Gaps = 5/131 (3%)
Query: 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRG 78
++Q+GR +G F AFD+HMNL+L DC+EFRK+ P KN+ ERE++R LGLVLLRG
Sbjct: 2 CSLQNGRIFIGTFKAFDKHMNLILCDCDEFRKIKP----KNSKQAEREEKRVLGLVLLRG 57
Query: 79 EEVISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA-APLVQAQPGLAGPVRGV 137
E ++SMTVEGPPP + A+ A A GPGIGRAAGRG+PA P+ QA GLAGPVRGV
Sbjct: 58 ENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGV 117
Query: 138 GGPAPGMMQPQ 148
GGP+ +M PQ
Sbjct: 118 GGPSQQVMTPQ 128
>sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B
OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1
Length = 160
Score = 117 bits (293), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 74/98 (75%), Gaps = 4/98 (4%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN 60
M++SK++KM+ +NYRM++ +QDGR +G F AFD+HMN++L +CEE R++ P GKK +
Sbjct: 1 MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTD 60
Query: 61 TNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAK 98
E++R LGLVL+RGE ++SMTV+GPPP ++ +
Sbjct: 61 G----EEKRILGLVLVRGEHIVSMTVDGPPPRDDDSVR 94
>sp|P40018|RSMB_YEAST Small nuclear ribonucleoprotein-associated protein B
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SMB1 PE=1 SV=1
Length = 196
Score = 88.2 bits (217), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 8/98 (8%)
Query: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR-------KLPP 53
+ ++ SS++ I+Y++RV QDGR +G+ MAFD+HMNLVL +C E R KL P
Sbjct: 4 IQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRP 63
Query: 54 AKGKKNNTNEE-REDRRTLGLVLLRGEEVISMTVEGPP 90
K K+ T + ++R LGL +LRGE+++S VE P
Sbjct: 64 RKDSKDGTTLNIKVEKRVLGLTILRGEQILSTVVEDKP 101
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.139 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,973,338
Number of Sequences: 539616
Number of extensions: 9540507
Number of successful extensions: 176898
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1942
Number of HSP's successfully gapped in prelim test: 3374
Number of HSP's that attempted gapping in prelim test: 50547
Number of HSP's gapped (non-prelim): 42337
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)