Query 023166
Match_columns 286
No_of_seqs 221 out of 1092
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 17:26:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_B SM B; protein-RNA compl 100.0 4.1E-49 1.4E-53 357.1 22.9 189 1-203 1-190 (231)
2 1d3b_B Protein (small nuclear 99.9 2.2E-27 7.4E-32 185.2 8.3 90 1-94 1-90 (91)
3 3s6n_G Small nuclear ribonucle 99.9 3.8E-23 1.3E-27 157.2 7.1 74 1-88 1-74 (76)
4 1h64_1 SnRNP SM-like protein; 99.9 5.3E-22 1.8E-26 149.7 9.4 73 1-87 1-73 (75)
5 4emg_A Probable U6 snRNA-assoc 99.9 4.4E-22 1.5E-26 157.3 9.1 83 3-86 7-90 (93)
6 1i4k_A Putative snRNP SM-like 99.9 8E-22 2.7E-26 149.2 9.5 74 1-88 1-74 (77)
7 1th7_A SnRNP-2, small nuclear 99.9 8.3E-22 2.8E-26 151.0 9.7 73 2-88 7-79 (81)
8 3bw1_A SMX4 protein, U6 snRNA- 99.9 9.8E-22 3.4E-26 155.8 9.8 76 6-88 12-87 (96)
9 4emk_C U6 snRNA-associated SM- 99.9 8E-22 2.7E-26 161.2 9.0 75 7-88 26-100 (113)
10 4emk_B U6 snRNA-associated SM- 99.9 1.4E-21 4.9E-26 147.9 8.4 73 1-87 1-73 (75)
11 4emk_A U6 snRNA-associated SM- 99.8 3.1E-21 1.1E-25 153.4 10.1 71 7-90 23-93 (94)
12 2fwk_A U6 snRNA-associated SM- 99.8 1.1E-21 3.9E-26 161.3 6.3 85 7-91 31-116 (121)
13 1i8f_A Putative snRNP SM-like 99.8 5.4E-21 1.9E-25 146.7 9.2 67 6-87 13-79 (81)
14 1ljo_A Archaeal SM-like protei 99.8 6.9E-21 2.4E-25 144.4 9.7 70 4-87 5-75 (77)
15 1mgq_A SM-like protein; LSM, R 99.8 6.9E-21 2.4E-25 146.8 9.1 66 6-85 17-82 (83)
16 1b34_A Protein (small nuclear 99.8 1.7E-20 5.9E-25 154.0 9.5 71 7-91 5-75 (119)
17 1b34_B Protein (small nuclear 99.8 1.8E-20 6.1E-25 153.5 8.9 83 6-88 29-113 (118)
18 3s6n_F Small nuclear ribonucle 99.8 3.5E-20 1.2E-24 144.4 9.2 69 6-88 8-76 (86)
19 3s6n_E Small nuclear ribonucle 99.8 2.8E-20 9.5E-25 147.2 6.7 69 6-87 18-90 (92)
20 1d3b_A Protein (small nuclear 99.8 1.8E-19 6.1E-24 136.9 9.7 73 1-87 1-74 (75)
21 1n9r_A SMF, small nuclear ribo 99.8 7.8E-20 2.7E-24 144.7 7.9 68 6-87 23-91 (93)
22 4emh_A Probable U6 snRNA-assoc 99.8 5.5E-19 1.9E-23 143.0 8.6 68 8-88 20-87 (105)
23 2y9a_D Small nuclear ribonucle 99.8 1.5E-18 5.2E-23 144.5 9.0 76 1-90 1-77 (126)
24 1m5q_A SMAP3, small nuclear ri 99.7 1.2E-17 4E-22 139.8 8.5 70 7-95 3-72 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.8 1.6E-08 5.5E-13 79.6 7.4 66 6-91 9-75 (86)
26 2vxe_A CG10686-PA; EDC3, CAR-1 97.4 0.00072 2.5E-08 53.4 8.8 77 10-91 9-86 (88)
27 2fb7_A SM-like protein, LSM-14 97.3 0.00064 2.2E-08 54.4 7.0 81 6-91 11-92 (95)
28 4a53_A EDC3; RNA binding prote 96.4 0.0029 1E-07 52.7 4.4 36 9-45 7-44 (125)
29 1y96_B Gemin7, SIP3, GEM-assoc 96.1 0.014 4.9E-07 45.7 6.8 61 8-87 23-84 (85)
30 2vc8_A Enhancer of mRNA-decapp 94.8 0.055 1.9E-06 42.3 5.9 65 10-91 5-71 (84)
31 2qtx_A Uncharacterized protein 94.5 0.051 1.7E-06 41.3 4.9 31 14-44 25-55 (71)
32 1ycy_A Conserved hypothetical 94.0 0.06 2E-06 40.5 4.3 42 7-49 9-50 (71)
33 1kq1_A HFQ, HOST factor for Q 94.0 0.071 2.4E-06 40.9 4.9 34 9-42 12-47 (77)
34 2ylb_A Protein HFQ; RNA-bindin 93.9 0.072 2.5E-06 40.5 4.8 33 9-41 14-48 (74)
35 3ahu_A Protein HFQ; SM-like mo 93.8 0.08 2.7E-06 40.8 4.8 29 14-42 23-51 (78)
36 3sb2_A Protein HFQ; SM-like, R 93.0 0.07 2.4E-06 41.2 3.3 33 9-41 13-47 (79)
37 2y90_A Protein HFQ; RNA-bindin 93.0 0.089 3.1E-06 42.6 4.1 34 9-42 14-49 (104)
38 1u1s_A HFQ protein; SM-like ba 92.5 0.14 4.9E-06 39.8 4.5 28 14-41 19-46 (82)
39 3rux_A BIRA bifunctional prote 90.4 0.17 5.9E-06 45.8 3.5 38 11-48 221-258 (270)
40 1ib8_A Conserved protein SP14. 90.4 0.27 9.3E-06 41.8 4.5 38 4-42 94-135 (164)
41 2rm4_A CG6311-PB, DM EDC3; enh 88.4 1.4 4.8E-05 35.4 6.9 68 10-93 8-76 (103)
42 3hfn_A ASL2047 protein; HFQ, S 87.7 0.94 3.2E-05 34.4 5.3 35 7-41 14-50 (72)
43 3pgw_B SM B; protein-RNA compl 87.1 2.6 8.8E-05 38.3 8.8 17 12-28 33-49 (231)
44 3hfo_A SSR3341 protein; HFQ, S 84.3 1.4 4.9E-05 33.2 4.8 35 7-41 12-48 (70)
45 2xk0_A Polycomb protein PCL; t 84.0 2.1 7.2E-05 32.3 5.5 39 13-51 18-57 (69)
46 1bia_A BIRA bifunctional prote 83.9 1.2 4.1E-05 40.8 5.1 35 10-45 269-303 (321)
47 2e12_A SM-like motif, hypothet 70.7 4.6 0.00016 32.1 4.1 23 9-31 21-45 (101)
48 1sg5_A ORF, hypothetical prote 66.5 4.9 0.00017 31.0 3.5 55 8-84 19-73 (86)
49 2dxu_A Biotin--[acetyl-COA-car 66.0 3.5 0.00012 36.4 2.9 31 13-45 188-218 (235)
50 2eqj_A Metal-response element- 56.9 19 0.00066 26.8 5.1 39 13-51 16-57 (66)
51 4hcz_A PHD finger protein 1; p 56.1 19 0.00065 26.3 4.8 38 13-50 6-46 (58)
52 2m0o_A PHD finger protein 1; t 53.6 7.7 0.00026 29.9 2.5 40 12-51 28-70 (79)
53 4a8c_A Periplasmic PH-dependen 50.4 16 0.00054 34.7 4.7 32 15-46 88-119 (436)
54 1ky9_A Protease DO, DEGP, HTRA 49.6 16 0.00054 35.0 4.5 32 15-46 111-142 (448)
55 2eay_A Biotin [acetyl-COA-carb 48.8 16 0.00053 32.0 4.1 30 16-45 188-217 (233)
56 2v8f_C MDIA1, profilin IIA; al 47.3 12 0.00042 23.1 2.2 7 242-248 6-12 (26)
57 2e5q_A PHD finger protein 19; 44.8 22 0.00074 26.4 3.6 39 13-51 10-51 (63)
58 2e5p_A Protein PHF1, PHD finge 44.7 40 0.0014 25.3 5.1 39 13-51 12-53 (68)
59 1x4r_A PARP14 protein; WWE dom 44.4 1.7 5.8E-05 34.8 -2.6 32 11-46 21-52 (99)
60 3stj_A Protease DEGQ; serine p 42.0 22 0.00075 32.7 4.1 31 15-45 88-118 (345)
61 3sti_A Protease DEGQ; serine p 41.1 21 0.00071 31.4 3.7 32 15-46 88-119 (245)
62 3fb9_A Uncharacterized protein 39.4 20 0.00068 28.2 2.9 29 6-34 17-49 (90)
63 3lgi_A Protease DEGS; stress-s 38.4 30 0.001 29.5 4.2 32 15-46 77-108 (237)
64 1y8t_A Hypothetical protein RV 38.0 27 0.00091 31.3 3.9 32 15-46 64-95 (324)
65 3tjo_A Serine protease HTRA1; 37.7 33 0.0011 29.4 4.3 33 14-46 86-118 (231)
66 3pv2_A DEGQ; trypsin fold, PDZ 37.6 22 0.00076 34.0 3.5 32 15-46 102-133 (451)
67 1te0_A Protease DEGS; two doma 37.3 30 0.001 31.0 4.2 33 15-47 66-98 (318)
68 1lcy_A HTRA2 serine protease; 35.0 35 0.0012 30.8 4.2 32 15-46 71-102 (325)
69 4e0q_A COP9 signalosome comple 33.9 9 0.00031 31.4 0.1 27 24-50 32-58 (141)
70 1x50_A Galectin-4; GAL-BIND le 32.6 76 0.0026 26.4 5.7 59 20-90 102-162 (164)
71 2pi2_E Replication protein A 1 30.8 66 0.0023 26.7 4.9 16 6-21 35-50 (142)
72 3qo6_A Protease DO-like 1, chl 29.6 48 0.0016 30.2 4.2 32 15-46 77-108 (348)
73 2w5e_A Putative serine proteas 28.7 70 0.0024 26.4 4.7 30 14-45 42-71 (163)
74 3num_A Serine protease HTRA1; 28.1 61 0.0021 29.1 4.6 32 15-46 70-101 (332)
75 3q72_A GTP-binding protein RAD 27.5 75 0.0026 23.9 4.4 44 3-46 13-57 (166)
76 3qx1_A FAS-associated factor 1 27.3 33 0.0011 25.1 2.3 23 15-37 8-30 (84)
77 3by7_A Uncharacterized protein 26.7 1.9E+02 0.0063 23.0 6.6 65 19-88 8-76 (100)
78 1zq1_A Glutamyl-tRNA(Gln) amid 25.9 58 0.002 31.7 4.3 21 13-33 14-37 (438)
79 2yro_A Galectin-8; GAL-BIND le 24.6 1.6E+02 0.0053 24.2 6.1 59 20-90 92-152 (155)
80 4fln_A Protease DO-like 2, chl 23.4 53 0.0018 32.7 3.5 31 15-45 97-128 (539)
81 1v6z_A Hypothetical protein TT 22.7 1.5E+02 0.0053 25.7 6.1 26 14-42 32-57 (228)
82 3doa_A Fibrinogen binding prot 22.0 60 0.002 29.4 3.3 19 28-46 116-134 (288)
83 2dir_A Thump domain-containing 22.0 66 0.0023 24.1 3.1 23 14-36 74-96 (98)
84 3ap9_A Galectin-8; beta-sandwi 21.3 1.7E+02 0.0059 23.8 5.7 55 22-88 98-153 (154)
85 2qqr_A JMJC domain-containing 20.6 1.1E+02 0.0036 24.9 4.2 24 13-36 8-31 (118)
86 1l1j_A Heat shock protease HTR 20.5 29 0.00098 30.2 0.8 32 15-46 80-111 (239)
87 1vhy_A Hypothetical protein HI 20.2 1.8E+02 0.0063 25.7 6.1 32 14-45 39-71 (257)
No 1
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=100.00 E-value=4.1e-49 Score=357.10 Aligned_cols=189 Identities=57% Similarity=0.998 Sum_probs=167.4
Q ss_pred CCchhhhHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCce
Q 023166 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEE 80 (286)
Q Consensus 1 m~~~k~skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGen 80 (286)
|+|+|+++|++||||+|+|+|+|||+|+|+|++||+||||||+||+||++++.|+++ +.+.+++|+||+|||||||
T Consensus 1 ~~v~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k----~~~~~~~R~LGlV~IRGdn 76 (231)
T 3pgw_B 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSK----QAEREEKRVLGLVLLRGEN 76 (231)
T ss_pred CCcCchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccc----cccccceeEeceEEECCCc
Confidence 899999999999999999999999999999999999999999999999976554332 2356789999999999999
Q ss_pred eEEeeecCCCCChhhhhhhccccCCCCCCccccCCCCCCC-CCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023166 81 VISMTVEGPPPPEESRAKAVSASAVAGPGIGRAAGRGVPA-APLVQAQPGLAGPVRGVGGPAPGMMQPQISRPPIPQLSA 159 (286)
Q Consensus 81 IVSIsVe~PPp~d~~~~~~~~~~~~~Gpg~~r~aGRG~p~-~~~~~~~~gL~gp~~gvggp~~~~m~p~~~~~~~~~~~a 159 (286)
|++|++|+++++|+++.+++++++++|||++|+||||+++ .++++++.||+||++|||+|++++|+||++ ..+.+
T Consensus 77 IV~Isve~pPp~d~~~~~~~~~~~~~gpg~~~~agrg~~~~~~~~~~~~gl~gp~~g~g~p~~~~~~p~~~----~~~~~ 152 (231)
T 3pgw_B 77 LVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGR----GTVAA 152 (231)
T ss_pred EEEEEecCCCCCCcccccccccccCCCCcccccccCCCCccCCCCCCccccccccccccCCCcccccCCCc----ccccc
Confidence 9999999999999999888888899999999999999997 567889999999999999999999999985 46666
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023166 160 PPMTYPATSGGPPVIRPPGQMPPPVYPGQGPPMARGPPPQGPPQ 203 (286)
Q Consensus 160 ~~~~~~~~~~~~p~~~ppg~~~~~~~~~~~p~~~~g~ppp~~~~ 203 (286)
......++.-+++..++++....+ ++++++++|++.|.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~~~ 190 (231)
T 3pgw_B 153 AAAAATASIAGAPTQYPPGRGGPP------PPMGRGAPPPGMMG 190 (231)
T ss_pred cccccccccccCCcccCccccCCC------CccccCCCCCcccC
Confidence 666666666677888888877543 78999999999887
No 2
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.94 E-value=2.2e-27 Score=185.17 Aligned_cols=90 Identities=63% Similarity=1.116 Sum_probs=72.0
Q ss_pred CCchhhhHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCce
Q 023166 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEE 80 (286)
Q Consensus 1 m~~~k~skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGen 80 (286)
|+++++++|.+|+|++|+|+|+|||+|+|+|+|||+||||||+||+|++++..++.+ ..+.+++|.||++||||+|
T Consensus 1 m~~~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~----~~~~~~~~~lg~v~iRG~~ 76 (91)
T 1d3b_B 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSK----QAEREEKRVLGLVLLRGEN 76 (91)
T ss_dssp ------CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTT----SCCEEEEEEEEEEEECGGG
T ss_pred CCCChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccc----cccCccEeECCEEEECCCe
Confidence 889999999999999999999999999999999999999999999999865443221 1235678999999999999
Q ss_pred eEEeeecCCCCChh
Q 023166 81 VISMTVEGPPPPEE 94 (286)
Q Consensus 81 IVSIsVe~PPp~d~ 94 (286)
|++|+++++++.|+
T Consensus 77 I~~i~~~~~~~~~~ 90 (91)
T 1d3b_B 77 LVSMTVEGPPPKDT 90 (91)
T ss_dssp EEEEEEEECCC---
T ss_pred EEEEEcCCCCCCCC
Confidence 99999999998764
No 3
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.88 E-value=3.8e-23 Score=157.15 Aligned_cols=74 Identities=26% Similarity=0.601 Sum_probs=52.3
Q ss_pred CCchhhhHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCce
Q 023166 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEE 80 (286)
Q Consensus 1 m~~~k~skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGen 80 (286)
||..+.++|.+|+|++|+|+|+|||+|+|+|++||+||||+|+||+|+++. .+++.||+++|||+|
T Consensus 1 ms~~~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~--------------~~~~~lg~v~iRG~~ 66 (76)
T 3s6n_G 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS--------------GQQNNIGMVVIRGNS 66 (76)
T ss_dssp -------------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC------------------CBSSEEECSSS
T ss_pred CCCcchHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccC--------------CcEeEcCEEEECCCe
Confidence 788888999999999999999999999999999999999999999998641 246899999999999
Q ss_pred eEEeeecC
Q 023166 81 VISMTVEG 88 (286)
Q Consensus 81 IVSIsVe~ 88 (286)
|++|+..+
T Consensus 67 I~~i~~~d 74 (76)
T 3s6n_G 67 IIMLEALE 74 (76)
T ss_dssp EEEEEC--
T ss_pred EEEEEecc
Confidence 99998543
No 4
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.86 E-value=5.3e-22 Score=149.71 Aligned_cols=73 Identities=22% Similarity=0.475 Sum_probs=64.8
Q ss_pred CCchhhhHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCce
Q 023166 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEE 80 (286)
Q Consensus 1 m~~~k~skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGen 80 (286)
|+..-.+.|.+|+|++|+|+|+|||+|+|+|++||+||||+|+||+|++. .++++.||+++|||+|
T Consensus 1 m~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~--------------~~~~~~lg~v~iRG~~ 66 (75)
T 1h64_1 1 MAERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQD--------------GEVVKRYGKIVIRGDN 66 (75)
T ss_dssp --CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEET--------------TEEEEEEEEEEECGGG
T ss_pred CCchHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEee--------------CCceeECCEEEECCCE
Confidence 56666778999999999999999999999999999999999999999974 1468899999999999
Q ss_pred eEEeeec
Q 023166 81 VISMTVE 87 (286)
Q Consensus 81 IVSIsVe 87 (286)
|++|+..
T Consensus 67 I~~i~~~ 73 (75)
T 1h64_1 67 VLAISPT 73 (75)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999764
No 5
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.86 E-value=4.4e-22 Score=157.32 Aligned_cols=83 Identities=23% Similarity=0.492 Sum_probs=61.7
Q ss_pred chhhhHHHHh-cCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCcee
Q 023166 3 MSKSSKMLQF-INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEV 81 (286)
Q Consensus 3 ~~k~skL~ql-IgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenI 81 (286)
+....+|+++ +|++|+|+|+|||+|+|+|++||+||||||+||+|+++.+.++++.. +..+++++|.||++||||+||
T Consensus 7 ~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~-~~~~~~~~r~lG~v~iRG~nV 85 (93)
T 4emg_A 7 VAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDK-DKALKTIRKHYEMLFVRGDSV 85 (93)
T ss_dssp --CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC---------------CEEEEEEEEEECGGGE
T ss_pred cCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccc-cccccccEeEeceEEECCCeE
Confidence 3455677665 99999999999999999999999999999999999997644322100 002346789999999999999
Q ss_pred EEeee
Q 023166 82 ISMTV 86 (286)
Q Consensus 82 VSIsV 86 (286)
++|+.
T Consensus 86 v~I~p 90 (93)
T 4emg_A 86 ILIAP 90 (93)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99974
No 6
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.86 E-value=8e-22 Score=149.19 Aligned_cols=74 Identities=30% Similarity=0.460 Sum_probs=65.1
Q ss_pred CCchhhhHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCce
Q 023166 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEE 80 (286)
Q Consensus 1 m~~~k~skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGen 80 (286)
|+..-.+.|.+|+|++|+|+|+|||+|+|+|++||+||||+|+||+|++. .++++.||+++|||+|
T Consensus 1 m~~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~--------------~~~~~~lg~v~iRG~~ 66 (77)
T 1i4k_A 1 MPPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQN--------------GEVVRKVGSVVIRGDT 66 (77)
T ss_dssp --CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEET--------------TEEEEEEEEEEECGGG
T ss_pred CCccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEec--------------CCcEeECCEEEECCCE
Confidence 55566678999999999999999999999999999999999999999974 1467899999999999
Q ss_pred eEEeeecC
Q 023166 81 VISMTVEG 88 (286)
Q Consensus 81 IVSIsVe~ 88 (286)
|++|+..+
T Consensus 67 I~~i~~~d 74 (77)
T 1i4k_A 67 VVFVSPAP 74 (77)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99998643
No 7
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.86 E-value=8.3e-22 Score=151.00 Aligned_cols=73 Identities=26% Similarity=0.499 Sum_probs=64.4
Q ss_pred CchhhhHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCcee
Q 023166 2 SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEV 81 (286)
Q Consensus 2 ~~~k~skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenI 81 (286)
+..-.+.|.+|+|++|+|+|+|||+|+|+|++||+||||||+||+|++. .++++.||+++|||+||
T Consensus 7 ~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~--------------~~~~~~lg~v~iRG~~I 72 (81)
T 1th7_A 7 AETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQS--------------DGSGKKLGTIVIRGDNV 72 (81)
T ss_dssp CHHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECS--------------SSCEEEEEEEEECGGGE
T ss_pred ccchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEec--------------CCceeECCEEEECCCEE
Confidence 3445578999999999999999999999999999999999999999874 13578999999999999
Q ss_pred EEeeecC
Q 023166 82 ISMTVEG 88 (286)
Q Consensus 82 VSIsVe~ 88 (286)
++|+..+
T Consensus 73 ~~i~~~~ 79 (81)
T 1th7_A 73 ILISPLQ 79 (81)
T ss_dssp EEEEEC-
T ss_pred EEEEecC
Confidence 9998654
No 8
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=9.8e-22 Score=155.79 Aligned_cols=76 Identities=28% Similarity=0.411 Sum_probs=65.3
Q ss_pred hhHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEee
Q 023166 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMT 85 (286)
Q Consensus 6 ~skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSIs 85 (286)
...|.+|+|++|+|+|+|||+|+|+|+|||+||||||+||+|++....+. ...+.+|.||++||||+||++|+
T Consensus 12 ~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~-------~~~~~~r~lG~v~IRG~nVv~I~ 84 (96)
T 3bw1_A 12 LDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNE-------ELSESERRCEMVFIRGDTVTLIS 84 (96)
T ss_dssp HHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTT-------CCCEEEEEEEEEEECGGGEEEEE
T ss_pred HHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEecccccc-------ccCcceeEcCEEEECCCEEEEEE
Confidence 45788999999999999999999999999999999999999998743221 12457899999999999999997
Q ss_pred ecC
Q 023166 86 VEG 88 (286)
Q Consensus 86 Ve~ 88 (286)
...
T Consensus 85 ~~d 87 (96)
T 3bw1_A 85 TPS 87 (96)
T ss_dssp CCC
T ss_pred ecC
Confidence 543
No 9
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.86 E-value=8e-22 Score=161.22 Aligned_cols=75 Identities=32% Similarity=0.529 Sum_probs=57.2
Q ss_pred hHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEeee
Q 023166 7 SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMTV 86 (286)
Q Consensus 7 skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSIsV 86 (286)
.+|.+|||++|+|+|+|||+|+|+|+|||+||||||+||+|++.... + ....+++|.||+|||||+||++|+.
T Consensus 26 ~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~--~-----~~~~~~~r~lG~v~IRG~nIv~I~~ 98 (113)
T 4emk_C 26 LDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPE--D-----GKLTGAIRKLGLVVVRGTTLVLIAP 98 (113)
T ss_dssp ------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC----------------CCEEEEEEEEECTTTEEEEEE
T ss_pred HHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCC--C-----cccccceeEccEEEECCCeEEEEEe
Confidence 57889999999999999999999999999999999999999986311 0 0224678999999999999999986
Q ss_pred cC
Q 023166 87 EG 88 (286)
Q Consensus 87 e~ 88 (286)
.+
T Consensus 99 ~d 100 (113)
T 4emk_C 99 MD 100 (113)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 10
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.85 E-value=1.4e-21 Score=147.91 Aligned_cols=73 Identities=22% Similarity=0.365 Sum_probs=65.6
Q ss_pred CCchhhhHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCce
Q 023166 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEE 80 (286)
Q Consensus 1 m~~~k~skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGen 80 (286)
|+..-.+.|.+|+|++|+|+|+|||+|+|+|++||+||||+|+||+|++. .++++.||+++|||+|
T Consensus 1 m~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~--------------~~~~~~lg~v~iRG~~ 66 (75)
T 4emk_B 1 MDSSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVN--------------GKKTNVYGDAFIRGNN 66 (75)
T ss_dssp CCSHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEET--------------TEEEEEEEEEEEEGGG
T ss_pred CCCchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEec--------------CCcccEecEEEEcCCe
Confidence 66667788999999999999999999999999999999999999999863 1357899999999999
Q ss_pred eEEeeec
Q 023166 81 VISMTVE 87 (286)
Q Consensus 81 IVSIsVe 87 (286)
|++|+..
T Consensus 67 I~~i~~~ 73 (75)
T 4emk_B 67 VLYVSAL 73 (75)
T ss_dssp SSEEEEC
T ss_pred EEEEEec
Confidence 9999753
No 11
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.85 E-value=3.1e-21 Score=153.43 Aligned_cols=71 Identities=23% Similarity=0.391 Sum_probs=62.5
Q ss_pred hHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEeee
Q 023166 7 SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMTV 86 (286)
Q Consensus 7 skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSIsV 86 (286)
.-|.+|+|++|+|+|+|||+|+|+|++||+||||||+||+|++. + .++++.||+++|||+||++|+.
T Consensus 23 ~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~-~------------~~~~~~lg~v~IRG~nI~~i~p 89 (94)
T 4emk_A 23 ELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDT-V------------TGVTEKHSEMLLNGNGMCMLIP 89 (94)
T ss_dssp HHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEET-T------------TCCEEEEEEEEECSTTEEEEEE
T ss_pred HHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEec-C------------CCcEeEcCEEEEcCCEEEEEEe
Confidence 45779999999999999999999999999999999999999973 1 2358899999999999999998
Q ss_pred cCCC
Q 023166 87 EGPP 90 (286)
Q Consensus 87 e~PP 90 (286)
.+.|
T Consensus 90 ~~~p 93 (94)
T 4emk_A 90 GGKP 93 (94)
T ss_dssp CC--
T ss_pred CCCC
Confidence 8754
No 12
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.84 E-value=1.1e-21 Score=161.32 Aligned_cols=85 Identities=22% Similarity=0.363 Sum_probs=64.1
Q ss_pred hHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCC-cccccceeEeceEEecCceeEEee
Q 023166 7 SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNT-NEEREDRRTLGLVLLRGEEVISMT 85 (286)
Q Consensus 7 skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~-~~e~eekR~LGlVLIRGenIVSIs 85 (286)
..|.+|+|++|+|+|+|||+|+|+|++||+||||||+||+|+++...++.+.... ....+++|.||++||||+||++|+
T Consensus 31 ~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv~I~ 110 (121)
T 2fwk_A 31 ALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAMLV 110 (121)
T ss_dssp HHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEEEEE
T ss_pred HHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEEEEE
Confidence 4567999999999999999999999999999999999999998642111000000 001223899999999999999999
Q ss_pred ecCCCC
Q 023166 86 VEGPPP 91 (286)
Q Consensus 86 Ve~PPp 91 (286)
..+.++
T Consensus 111 ~~~~~~ 116 (121)
T 2fwk_A 111 PGGDPD 116 (121)
T ss_dssp SSSCC-
T ss_pred ecCCCC
Confidence 888765
No 13
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.84 E-value=5.4e-21 Score=146.66 Aligned_cols=67 Identities=27% Similarity=0.479 Sum_probs=61.0
Q ss_pred hhHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEee
Q 023166 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMT 85 (286)
Q Consensus 6 ~skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSIs 85 (286)
.+.|.+|++++|+|+|+|||+|+|+|++||+||||||+||+|+ . .++++.||+++|||+||++|+
T Consensus 13 ~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~--------------~~~~~~lg~v~iRG~~I~~i~ 77 (81)
T 1i8f_A 13 GATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-I--------------DGNVYKRGTMVVRGENVLFIS 77 (81)
T ss_dssp HHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-E--------------TTEEEEEEEEEECGGGEEEEE
T ss_pred HHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-c--------------CCcccCCCEEEECCCEEEEEE
Confidence 4578899999999999999999999999999999999999998 2 135789999999999999998
Q ss_pred ec
Q 023166 86 VE 87 (286)
Q Consensus 86 Ve 87 (286)
..
T Consensus 78 ~~ 79 (81)
T 1i8f_A 78 PV 79 (81)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 14
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.84 E-value=6.9e-21 Score=144.43 Aligned_cols=70 Identities=30% Similarity=0.470 Sum_probs=63.2
Q ss_pred hhhhHHHHhcCCEEEEEEeCC-cEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeE
Q 023166 4 SKSSKMLQFINYRMRVTIQDG-RQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVI 82 (286)
Q Consensus 4 ~k~skL~qlIgkRVRVtLqDG-R~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIV 82 (286)
.-.+.|.+|++++|+|+|+|| |+|+|+|++||+||||+|+||+|+++ .++++.||+++|||+||+
T Consensus 5 ~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~--------------~~~~~~lg~v~iRG~nI~ 70 (77)
T 1ljo_A 5 LPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKG--------------EEKVRSLGEIVLRGNNVV 70 (77)
T ss_dssp CHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEET--------------TEEEEEEEEEEECGGGEE
T ss_pred chHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEec--------------CCcEeECCeEEEeCCeEE
Confidence 445688999999999999999 99999999999999999999999874 135789999999999999
Q ss_pred Eeeec
Q 023166 83 SMTVE 87 (286)
Q Consensus 83 SIsVe 87 (286)
+|+..
T Consensus 71 ~i~~~ 75 (77)
T 1ljo_A 71 LIQPQ 75 (77)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99864
No 15
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.84 E-value=6.9e-21 Score=146.84 Aligned_cols=66 Identities=33% Similarity=0.583 Sum_probs=60.7
Q ss_pred hhHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEee
Q 023166 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMT 85 (286)
Q Consensus 6 ~skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSIs 85 (286)
...|.+|+|++|+|+|+|||+|+|+|++||+||||+|+||+|++. .++++.||+++|||+||++|+
T Consensus 17 ~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~--------------~~~~~~lg~v~IRG~~I~~i~ 82 (83)
T 1mgq_A 17 LDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELED--------------GEVTRRLGTVLIRGDNIVYIS 82 (83)
T ss_dssp THHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEET--------------TEEEEEEEEEEECGGGEEEEE
T ss_pred HHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEec--------------CCcccCCCEEEECCCEEEEEE
Confidence 357889999999999999999999999999999999999999974 146889999999999999986
No 16
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.82 E-value=1.7e-20 Score=154.05 Aligned_cols=71 Identities=17% Similarity=0.294 Sum_probs=62.8
Q ss_pred hHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEeee
Q 023166 7 SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMTV 86 (286)
Q Consensus 7 skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSIsV 86 (286)
..|.+++|++|.|+|+||++|+|+|++||+||||||+||+|+.. ..+++.|+++||||+||++|++
T Consensus 5 ~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~--------------~~~~~~lg~v~IRG~nI~~I~~ 70 (119)
T 1b34_A 5 RFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLK--------------NREPVQLETLSIRGNNIRYFIL 70 (119)
T ss_dssp HHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECT--------------TSCCEEEEEEEECGGGEEEEEC
T ss_pred HHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecC--------------CCceeEcceEEEcCCeEEEEEe
Confidence 56889999999999999999999999999999999999999853 1245899999999999999998
Q ss_pred cCCCC
Q 023166 87 EGPPP 91 (286)
Q Consensus 87 e~PPp 91 (286)
.+.-.
T Consensus 71 pd~l~ 75 (119)
T 1b34_A 71 PDSLP 75 (119)
T ss_dssp CTTCC
T ss_pred ccccc
Confidence 76533
No 17
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.82 E-value=1.8e-20 Score=153.47 Aligned_cols=83 Identities=28% Similarity=0.475 Sum_probs=58.7
Q ss_pred hhHHHHhc--CCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEE
Q 023166 6 SSKMLQFI--NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVIS 83 (286)
Q Consensus 6 ~skL~qlI--gkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVS 83 (286)
.+.|.+++ |++|+|+|+|||+|+|+|++||+||||||+||+|++....+.++........+.+|.||++||||+||++
T Consensus 29 l~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nVv~ 108 (118)
T 1b34_B 29 LSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIV 108 (118)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGGEEE
T ss_pred HHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEEEE
Confidence 34577888 5999999999999999999999999999999999986543321110000123457899999999999999
Q ss_pred eeecC
Q 023166 84 MTVEG 88 (286)
Q Consensus 84 IsVe~ 88 (286)
|+...
T Consensus 109 I~~~~ 113 (118)
T 1b34_B 109 VLRNP 113 (118)
T ss_dssp EEECC
T ss_pred EEeCc
Confidence 98653
No 18
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.82 E-value=3.5e-20 Score=144.36 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=61.8
Q ss_pred hhHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEee
Q 023166 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMT 85 (286)
Q Consensus 6 ~skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSIs 85 (286)
...|.+|+|++|+|+|+|||+|+|+|++||+||||+|+||+|++. .++++.||+++|||+||++|+
T Consensus 8 ~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~--------------g~~~~~lg~v~IRG~nI~~i~ 73 (86)
T 3s6n_F 8 KPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYID--------------GALSGHLGEVLIRCNNVLYIR 73 (86)
T ss_dssp HHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEET--------------TEEEEEESSEEECGGGEEEEE
T ss_pred HHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcC--------------CceeeEccEEEEeCCeEEEEE
Confidence 456889999999999999999999999999999999999999863 135789999999999999998
Q ss_pred ecC
Q 023166 86 VEG 88 (286)
Q Consensus 86 Ve~ 88 (286)
..+
T Consensus 74 ~~d 76 (86)
T 3s6n_F 74 GVE 76 (86)
T ss_dssp ECC
T ss_pred eCC
Confidence 754
No 19
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.81 E-value=2.8e-20 Score=147.23 Aligned_cols=69 Identities=28% Similarity=0.556 Sum_probs=61.2
Q ss_pred hhHHHHhcCCEEEEEE----eCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCcee
Q 023166 6 SSKMLQFINYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEV 81 (286)
Q Consensus 6 ~skL~qlIgkRVRVtL----qDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenI 81 (286)
.+-|.+|++++|+|+| +|||+|+|+|++||+||||||+||+|++.. .++++.||++||||+||
T Consensus 18 l~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~-------------~~~~~~lg~v~iRG~nV 84 (92)
T 3s6n_E 18 INLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSK-------------TKSRKQLGRIMLKGDNI 84 (92)
T ss_dssp HHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSS-------------SCCEEEEEEEEECGGGE
T ss_pred HHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecC-------------CCceeEcCeEEEeCCEE
Confidence 3557799999999999 999999999999999999999999999741 24688999999999999
Q ss_pred EEeeec
Q 023166 82 ISMTVE 87 (286)
Q Consensus 82 VSIsVe 87 (286)
++|+..
T Consensus 85 ~~i~~~ 90 (92)
T 3s6n_E 85 TLLQSV 90 (92)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999753
No 20
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.80 E-value=1.8e-19 Score=136.88 Aligned_cols=73 Identities=16% Similarity=0.204 Sum_probs=61.7
Q ss_pred CCchhhhH-HHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCc
Q 023166 1 MSMSKSSK-MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGE 79 (286)
Q Consensus 1 m~~~k~sk-L~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGe 79 (286)
|+++...+ |.+++|++|+|+|+||++|+|+|.+||.||||+|+||+|+.+ ..+++.+|.++|||+
T Consensus 1 ~~~~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~--------------~~~~~~lg~v~IRG~ 66 (75)
T 1d3b_A 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR--------------DGRVAQLEQVYIRGC 66 (75)
T ss_dssp ---CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECT--------------TSCEEEEEEEEECGG
T ss_pred CCccCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECC--------------CCcEEEcCeEEEeCC
Confidence 56655555 568999999999999999999999999999999999999863 124789999999999
Q ss_pred eeEEeeec
Q 023166 80 EVISMTVE 87 (286)
Q Consensus 80 nIVSIsVe 87 (286)
||++|++.
T Consensus 67 nI~~i~lP 74 (75)
T 1d3b_A 67 KIRFLILP 74 (75)
T ss_dssp GEEEEEEC
T ss_pred EEEEEEcC
Confidence 99999875
No 21
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.80 E-value=7.8e-20 Score=144.68 Aligned_cols=68 Identities=24% Similarity=0.360 Sum_probs=59.6
Q ss_pred hhHHHHhcCCEEEEEEeCC-cEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEe
Q 023166 6 SSKMLQFINYRMRVTIQDG-RQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISM 84 (286)
Q Consensus 6 ~skL~qlIgkRVRVtLqDG-R~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSI 84 (286)
...|.+++|++|+|+|+|| |+|+|+|++||+||||+|+||+|++. .++++.||++||||+||++|
T Consensus 23 ~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~--------------~~~~~~lg~v~IRG~nI~~I 88 (93)
T 1n9r_A 23 KPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVA--------------GVSHGTLGEIFIRCNNVLYI 88 (93)
T ss_dssp ---CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEET--------------TEEEEECCSEEECGGGEEEE
T ss_pred HHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcC--------------CCeEeEcCEEEEcCCeEEEE
Confidence 3568899999999999999 99999999999999999999999863 13578999999999999999
Q ss_pred eec
Q 023166 85 TVE 87 (286)
Q Consensus 85 sVe 87 (286)
+..
T Consensus 89 ~~~ 91 (93)
T 1n9r_A 89 REL 91 (93)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 22
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.77 E-value=5.5e-19 Score=142.96 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=55.0
Q ss_pred HHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEeeec
Q 023166 8 KMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMTVE 87 (286)
Q Consensus 8 kL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSIsVe 87 (286)
.|.+++|++|+|+|+|||+|+|+|++||.||||+|+||+|+.. +.++++.||++||||+||++|++.
T Consensus 20 lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~-------------dg~~~~~lg~v~IRG~nI~~I~~p 86 (105)
T 4emh_A 20 LLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMP-------------DGDKFFRLPECYIRGNNIKYLRIQ 86 (105)
T ss_dssp ------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECT-------------TSCEEEEEEEEEECGGGEEEEEC-
T ss_pred HHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEcc-------------CCceeeEcCeEEEeCCeEEEEecC
Confidence 4678999999999999999999999999999999999999853 123578999999999999999876
Q ss_pred C
Q 023166 88 G 88 (286)
Q Consensus 88 ~ 88 (286)
+
T Consensus 87 d 87 (105)
T 4emh_A 87 D 87 (105)
T ss_dssp -
T ss_pred H
Confidence 5
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.76 E-value=1.5e-18 Score=144.47 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=62.9
Q ss_pred CCchhhh-HHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCc
Q 023166 1 MSMSKSS-KMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGE 79 (286)
Q Consensus 1 m~~~k~s-kL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGe 79 (286)
|++.... .|.++++++|.|+|+||++|+|+|.+||.||||+|+||+|+... .+++.|++|||||+
T Consensus 1 ~~~~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~--------------g~~~~l~~v~IRGn 66 (126)
T 2y9a_D 1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD--------------GRVAQLEQVYIRGS 66 (126)
T ss_dssp ---CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTT--------------SCCEEEEEEEECGG
T ss_pred CCcccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCC--------------CcEeecccEEEeCC
Confidence 5554444 46689999999999999999999999999999999999998530 13679999999999
Q ss_pred eeEEeeecCCC
Q 023166 80 EVISMTVEGPP 90 (286)
Q Consensus 80 nIVSIsVe~PP 90 (286)
||++|++.+--
T Consensus 67 nI~~I~lpd~l 77 (126)
T 2y9a_D 67 KIRFLILPDML 77 (126)
T ss_dssp GEEEEECCSSC
T ss_pred EEEEEEccccc
Confidence 99999987743
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.72 E-value=1.2e-17 Score=139.79 Aligned_cols=70 Identities=13% Similarity=0.269 Sum_probs=62.9
Q ss_pred hHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEeee
Q 023166 7 SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMTV 86 (286)
Q Consensus 7 skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSIsV 86 (286)
+.|.+++|++|+|+|+|||+|+|+|++||+||||+|+||+|+. ++.||+++|||+||++|+.
T Consensus 3 ~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~------------------~~~lg~v~IRG~nI~~I~~ 64 (130)
T 1m5q_A 3 AELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA------------------GEKFNRVFIMYRYIVHIDS 64 (130)
T ss_dssp HHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT------------------CCEEEEEEECGGGEEEEEE
T ss_pred hHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc------------------CCEeceEEEeCCeEEEEEc
Confidence 5789999999999999999999999999999999999999862 2578999999999999999
Q ss_pred cCCCCChhh
Q 023166 87 EGPPPPEES 95 (286)
Q Consensus 87 e~PPp~d~~ 95 (286)
.+.. .|..
T Consensus 65 ~d~~-~d~~ 72 (130)
T 1m5q_A 65 TERR-IDMR 72 (130)
T ss_dssp CCCC-CCHH
T ss_pred CCcc-cCHH
Confidence 8876 5553
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.77 E-value=1.6e-08 Score=79.57 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=56.6
Q ss_pred hhHHHHhcCCEEEEEEeCCcEEEEEEEEec-cccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEe
Q 023166 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFD-RHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISM 84 (286)
Q Consensus 6 ~skL~qlIgkRVRVtLqDGR~fvGtLlAFD-KhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSI 84 (286)
..+|.+||||+|+|+|.||++|+|+|.+|| ...||||.|+.| +.....++|-|..|+.|
T Consensus 9 p~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~~--------------------~~~~~~~iI~G~aI~eI 68 (86)
T 1y96_A 9 PLEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFLE--------------------DGSMSVTGIMGHAVQTV 68 (86)
T ss_dssp HHHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEECT--------------------TSCEEEEEECGGGEEEE
T ss_pred HHHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeeccc--------------------CCeEEEEEEecceEEEE
Confidence 457999999999999999999999999999 899999999821 11236899999999999
Q ss_pred eecCCCC
Q 023166 85 TVEGPPP 91 (286)
Q Consensus 85 sVe~PPp 91 (286)
.+.+.+.
T Consensus 69 ~v~~~~~ 75 (86)
T 1y96_A 69 ETMNEGD 75 (86)
T ss_dssp EEEECCC
T ss_pred EEecchh
Confidence 9887654
No 26
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.42 E-value=0.00072 Score=53.40 Aligned_cols=77 Identities=12% Similarity=0.228 Sum_probs=60.8
Q ss_pred HHhcCCEEEEEEeCCcEEEEEEEEecc-ccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEeeecC
Q 023166 10 LQFINYRMRVTIQDGRQLVGKFMAFDR-HMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMTVEG 88 (286)
Q Consensus 10 ~qlIgkRVRVtLqDGR~fvGtLlAFDK-hMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSIsVe~ 88 (286)
..||+++|.++.+.+-.|+|+|..+|. ..-|.|.|+.-|-+..++.. .+.--....+..|+.||+.|..|+|.+
T Consensus 9 ~~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~-----~~ipp~~~vy~yIvFrgsDIKdL~V~~ 83 (88)
T 2vxe_A 9 LPELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQ-----FQIAPQSQIYDYILFRGSDIKDIRVVN 83 (88)
T ss_dssp SCCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCS-----SCCCCCCSCEEEEEEETTTEEEEEECC
T ss_pred CcccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCC-----cccCCCCceeeEEEEccCCccEEEEec
Confidence 579999999999999999999999995 46799999998877543321 112223456689999999999999987
Q ss_pred CCC
Q 023166 89 PPP 91 (286)
Q Consensus 89 PPp 91 (286)
.-+
T Consensus 84 ~~p 86 (88)
T 2vxe_A 84 NHT 86 (88)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 27
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=97.27 E-value=0.00064 Score=54.36 Aligned_cols=81 Identities=16% Similarity=0.306 Sum_probs=59.6
Q ss_pred hhHHHHhcCCEEEEEEeCCcEEEEEEEEec-cccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEe
Q 023166 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFD-RHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISM 84 (286)
Q Consensus 6 ~skL~qlIgkRVRVtLqDGR~fvGtLlAFD-KhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSI 84 (286)
+....+||+++|.++.+.+-.|+|+|..+| +..-|.|.|+.-|-+..++... ..--....+..|+.||+.|..|
T Consensus 11 ~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~-----~ipp~~~vyeyIvFrGsDIKDL 85 (95)
T 2fb7_A 11 PSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDR-----PIAPRDETFEYIIFRGSDIKDL 85 (95)
T ss_dssp -----CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSS-----CCCSCCCCSSCEEECSTTEEEE
T ss_pred CCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCC-----ccCCCCcceeEEEEcCCCcceE
Confidence 345678999999999999999999999999 4567899999888765332211 1122344668899999999999
Q ss_pred eecCCCC
Q 023166 85 TVEGPPP 91 (286)
Q Consensus 85 sVe~PPp 91 (286)
+|.++|.
T Consensus 86 ~V~e~p~ 92 (95)
T 2fb7_A 86 TVCEPPK 92 (95)
T ss_dssp EESCCSC
T ss_pred EEecCCC
Confidence 9987654
No 28
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.38 E-value=0.0029 Score=52.73 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=32.1
Q ss_pred HHHhcCCEEEEEEeCCcEEEEEEEEeccccceEe--Cce
Q 023166 9 MLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVL--GDC 45 (286)
Q Consensus 9 L~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVL--sD~ 45 (286)
+.+||+|.|.|+|+||..+.|++..+|.. +|+| +|+
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~k-~LtL~~~~a 44 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDSS-NSILQLRLA 44 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEETT-TTEEEEEET
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecCC-eeEEecccc
Confidence 56999999999999999999999999955 6777 776
No 29
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=96.11 E-value=0.014 Score=45.73 Aligned_cols=61 Identities=21% Similarity=0.347 Sum_probs=46.7
Q ss_pred HHHHhcCCEEEEEEeCCcEEEEEEEEeccc-cceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEeee
Q 023166 8 KMLQFINYRMRVTIQDGRQLVGKFMAFDRH-MNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMTV 86 (286)
Q Consensus 8 kL~qlIgkRVRVtLqDGR~fvGtLlAFDKh-MNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSIsV 86 (286)
.|+...+++|.++|.++.++.|+|.|+|.. .|+..+|-+- ---.+...+||+..|++|++
T Consensus 23 ~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~T-------------------PiGv~~eAlLR~~Dii~~sF 83 (85)
T 1y96_B 23 SLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQT-------------------PIGVQAEALLRCSDIISYTF 83 (85)
T ss_dssp HHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEECC-------------------TTCCEEEEEEEGGGEEEEEE
T ss_pred HHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcCC-------------------CcccchhhhhhcCCEEEEEe
Confidence 355678999999999999999999999954 4555443321 12236688999999999997
Q ss_pred c
Q 023166 87 E 87 (286)
Q Consensus 87 e 87 (286)
+
T Consensus 84 ~ 84 (85)
T 1y96_B 84 K 84 (85)
T ss_dssp C
T ss_pred c
Confidence 6
No 30
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=94.80 E-value=0.055 Score=42.34 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=51.6
Q ss_pred HHhcCCEEEEEEeCCc-EEEEEEEEeccc-cceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEeeec
Q 023166 10 LQFINYRMRVTIQDGR-QLVGKFMAFDRH-MNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMTVE 87 (286)
Q Consensus 10 ~qlIgkRVRVtLqDGR-~fvGtLlAFDKh-MNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSIsVe 87 (286)
.+||++.|.|...|.- .|.|.|..+|.+ -||.|.++ |+. + .+...-.|.+|+.-|..+.+.
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~--f~N-----G----------~~~~s~eVtls~~DI~~L~ii 67 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRP--FHN-----G----------VKCLVPEVTFRAGDITELKIL 67 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEE--EET-----T----------EECSSSEEEEEGGGCSEEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehh--hhC-----C----------CCCCCcEEEEEecChhheEEE
Confidence 4899999999999999 999999999977 47999999 432 1 122223499999999999887
Q ss_pred CCCC
Q 023166 88 GPPP 91 (286)
Q Consensus 88 ~PPp 91 (286)
.-+.
T Consensus 68 ~~~~ 71 (84)
T 2vc8_A 68 EIPG 71 (84)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 6544
No 31
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=94.50 E-value=0.051 Score=41.26 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=25.5
Q ss_pred CCEEEEEEeCCcEEEEEEEEeccccceEeCc
Q 023166 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGD 44 (286)
Q Consensus 14 gkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD 44 (286)
+..|+|-|.||-.++|++++||+|+=|+-+|
T Consensus 25 ~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~~ 55 (71)
T 2qtx_A 25 GKKVKIFLRNGEVLDAEVTGVSNYEIMVKVG 55 (71)
T ss_dssp TCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred CCcEEEEEeCCeEEEEEEEEEcceEEEEEeC
Confidence 4578888999999999999999998555333
No 32
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=94.02 E-value=0.06 Score=40.52 Aligned_cols=42 Identities=14% Similarity=0.362 Sum_probs=33.3
Q ss_pred hHHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEee
Q 023166 7 SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 49 (286)
Q Consensus 7 skL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r 49 (286)
..|.+|.++||-|.+.....|+|+|.-||... |.|.|+..+.
T Consensus 9 ktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~ 50 (71)
T 1ycy_A 9 KVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVI 50 (71)
T ss_dssp HHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETT
T ss_pred HHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHh
Confidence 35788999999999999999999999999884 7889998765
No 33
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=94.01 E-value=0.071 Score=40.88 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=27.4
Q ss_pred HHHhc--CCEEEEEEeCCcEEEEEEEEeccccceEe
Q 023166 9 MLQFI--NYRMRVTIQDGRQLVGKFMAFDRHMNLVL 42 (286)
Q Consensus 9 L~qlI--gkRVRVtLqDGR~fvGtLlAFDKhMNLVL 42 (286)
|+++. ...|.|.|.+|-.++|++++||+|+=|+-
T Consensus 12 Ln~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~ 47 (77)
T 1kq1_A 12 LENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLN 47 (77)
T ss_dssp HHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 34444 56888899999999999999999985553
No 34
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=93.94 E-value=0.072 Score=40.53 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=26.9
Q ss_pred HHHhc--CCEEEEEEeCCcEEEEEEEEeccccceE
Q 023166 9 MLQFI--NYRMRVTIQDGRQLVGKFMAFDRHMNLV 41 (286)
Q Consensus 9 L~qlI--gkRVRVtLqDGR~fvGtLlAFDKhMNLV 41 (286)
|+++. ...|.|.|.+|-.++|++++||+|+=|+
T Consensus 14 L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL 48 (74)
T 2ylb_A 14 LNALRRERVPVSIYLVNGIKLQGQIESFDQFVILL 48 (74)
T ss_dssp HHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 44444 5688899999999999999999998444
No 35
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=93.77 E-value=0.08 Score=40.80 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=25.3
Q ss_pred CCEEEEEEeCCcEEEEEEEEeccccceEe
Q 023166 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVL 42 (286)
Q Consensus 14 gkRVRVtLqDGR~fvGtLlAFDKhMNLVL 42 (286)
...|+|-|.||..++|++++||+|+=|+-
T Consensus 23 ~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~ 51 (78)
T 3ahu_A 23 NTYVTVFLLNGFQLRGQVKGFDNFTVLLE 51 (78)
T ss_dssp TCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred CCcEEEEEeCCeEEEEEEEEEcceEEEEE
Confidence 56888999999999999999999985553
No 36
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=92.99 E-value=0.07 Score=41.23 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=25.9
Q ss_pred HHHhcCC--EEEEEEeCCcEEEEEEEEeccccceE
Q 023166 9 MLQFINY--RMRVTIQDGRQLVGKFMAFDRHMNLV 41 (286)
Q Consensus 9 L~qlIgk--RVRVtLqDGR~fvGtLlAFDKhMNLV 41 (286)
|+++..+ .|.|.|.+|-.++|++++||+|+=|+
T Consensus 13 Ln~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 13 LNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp HHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 4444444 58888999999999999999998444
No 37
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=92.96 E-value=0.089 Score=42.58 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=26.6
Q ss_pred HHHhcCC--EEEEEEeCCcEEEEEEEEeccccceEe
Q 023166 9 MLQFINY--RMRVTIQDGRQLVGKFMAFDRHMNLVL 42 (286)
Q Consensus 9 L~qlIgk--RVRVtLqDGR~fvGtLlAFDKhMNLVL 42 (286)
|+++..+ .|.|.|.+|-.++|++++||+|+=|+-
T Consensus 14 Ln~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~ 49 (104)
T 2y90_A 14 LNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (104)
T ss_dssp HHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 4444444 788889999999999999999985443
No 38
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=92.50 E-value=0.14 Score=39.77 Aligned_cols=28 Identities=21% Similarity=0.459 Sum_probs=24.6
Q ss_pred CCEEEEEEeCCcEEEEEEEEeccccceE
Q 023166 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLV 41 (286)
Q Consensus 14 gkRVRVtLqDGR~fvGtLlAFDKhMNLV 41 (286)
...|+|-|.||-.++|++++||+|+=|+
T Consensus 19 ~~~Vtv~L~NG~~l~G~I~~fD~ftVlL 46 (82)
T 1u1s_A 19 RVPVSIYLVNGIKLQGQIESFDQFVILL 46 (82)
T ss_dssp TCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred CCcEEEEEeCCcEEEEEEEEEcceEEEE
Confidence 4688888999999999999999998544
No 39
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=90.42 E-value=0.17 Score=45.80 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=32.4
Q ss_pred HhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEe
Q 023166 11 QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEF 48 (286)
Q Consensus 11 qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~ 48 (286)
.+++++|+|.+.++++++|+++++|.+-.|+|.+..+.
T Consensus 221 ~~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~~g~ 258 (270)
T 3rux_A 221 LTIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVGGRT 258 (270)
T ss_dssp SSTTSEEEEECTTSCEEEEEEEEECTTSCEEEEETTEE
T ss_pred cccCCEEEEEECCCeEEEEEEEEECCCCeEEEEECCCE
Confidence 36789999998889999999999999999999755443
No 40
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=90.37 E-value=0.27 Score=41.79 Aligned_cols=38 Identities=13% Similarity=0.344 Sum_probs=30.7
Q ss_pred hhhhHHHHhcCCEEEEEE----eCCcEEEEEEEEeccccceEe
Q 023166 4 SKSSKMLQFINYRMRVTI----QDGRQLVGKFMAFDRHMNLVL 42 (286)
Q Consensus 4 ~k~skL~qlIgkRVRVtL----qDGR~fvGtLlAFDKhMNLVL 42 (286)
-+..++.+|+++.|+|+| .+.+.|+|+|.++|.. +++|
T Consensus 94 ~~~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~-~v~l 135 (164)
T 1ib8_A 94 KTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED-ELTM 135 (164)
T ss_dssp SSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT-EEEE
T ss_pred CCHHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC-EEEE
Confidence 355678899999999999 4559999999999865 3444
No 41
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=88.37 E-value=1.4 Score=35.43 Aligned_cols=68 Identities=10% Similarity=0.150 Sum_probs=51.0
Q ss_pred HHhcCCEEEEEEeCCc-EEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEeeecC
Q 023166 10 LQFINYRMRVTIQDGR-QLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISMTVEG 88 (286)
Q Consensus 10 ~qlIgkRVRVtLqDGR-~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSIsVe~ 88 (286)
.+||++-|.|+..|.- .|.|.++.+|+. +|+|.++...-. -.+...-.|.+|...|.++.+-+
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~~-~ItL~kaFrNGi---------------plk~~~~EVtLsa~DI~~L~IIe 71 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISAE-EITIVRAFRNGV---------------PLRKQNAEVVLKCTDIRSIDLIE 71 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEETT-EEEEEEEEETTE---------------ECSCSSSCEEEETTTEEEEEEEE
T ss_pred cceeceEEEEeeCCcceEeeEEEEEcccc-eeEEhhhhhcCc---------------CcCCCCceEEEEecchhheeeec
Confidence 4899999999998887 999999999964 588888743211 11334456888888899888877
Q ss_pred CCCCh
Q 023166 89 PPPPE 93 (286)
Q Consensus 89 PPp~d 93 (286)
..-.|
T Consensus 72 ~~~~~ 76 (103)
T 2rm4_A 72 PAKQD 76 (103)
T ss_dssp CCCCC
T ss_pred ccccc
Confidence 65444
No 42
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=87.66 E-value=0.94 Score=34.35 Aligned_cols=35 Identities=11% Similarity=0.295 Sum_probs=28.7
Q ss_pred hHHHHhcCC--EEEEEEeCCcEEEEEEEEeccccceE
Q 023166 7 SKMLQFINY--RMRVTIQDGRQLVGKFMAFDRHMNLV 41 (286)
Q Consensus 7 skL~qlIgk--RVRVtLqDGR~fvGtLlAFDKhMNLV 41 (286)
..|.+||.. .|+|+|.+|..|+|++.-+|.|+=++
T Consensus 14 R~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L 50 (72)
T 3hfn_A 14 RQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCI 50 (72)
T ss_dssp HHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEE
Confidence 457788874 67788899999999999999987433
No 43
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=87.09 E-value=2.6 Score=38.25 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=13.3
Q ss_pred hcCCEEEEEEeCCcEEE
Q 023166 12 FINYRMRVTIQDGRQLV 28 (286)
Q Consensus 12 lIgkRVRVtLqDGR~fv 28 (286)
-+|+.+.+.|.|-.||+
T Consensus 33 gFDq~MNLVL~Da~E~~ 49 (231)
T 3pgw_B 33 AFDKHMNLILCDCDEFR 49 (231)
T ss_pred EEcccccEEecCEEEEE
Confidence 35778888888888875
No 44
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=84.34 E-value=1.4 Score=33.15 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=28.5
Q ss_pred hHHHHhcC--CEEEEEEeCCcEEEEEEEEeccccceE
Q 023166 7 SKMLQFIN--YRMRVTIQDGRQLVGKFMAFDRHMNLV 41 (286)
Q Consensus 7 skL~qlIg--kRVRVtLqDGR~fvGtLlAFDKhMNLV 41 (286)
..|.+||- ..|.|.|.+|..++|.+.-||.|+=++
T Consensus 12 R~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L 48 (70)
T 3hfo_A 12 RQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGL 48 (70)
T ss_dssp HHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEE
Confidence 35666775 578888999999999999999997444
No 45
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=84.01 E-value=2.1 Score=32.31 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=31.5
Q ss_pred cCCEEEEEEeCCcEEEEEEEEeccccceE-eCceEEeecC
Q 023166 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLV-LGDCEEFRKL 51 (286)
Q Consensus 13 IgkRVRVtLqDGR~fvGtLlAFDKhMNLV-LsD~eE~r~i 51 (286)
++..|.|+-+||+.|.||++..+++-=|| .+|-.|++..
T Consensus 18 ~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~ 57 (69)
T 2xk0_A 18 LQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCE 57 (69)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEEC
T ss_pred cCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeee
Confidence 67899999999999999998877665444 4788888764
No 46
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=83.90 E-value=1.2 Score=40.79 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=29.3
Q ss_pred HHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCce
Q 023166 10 LQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDC 45 (286)
Q Consensus 10 ~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~ 45 (286)
..+++++|+|... +.+++|+++++|.+-.|+|.+.
T Consensus 269 ~~~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~~ 303 (321)
T 1bia_A 269 DNFINRPVKLIIG-DKEIFGISRGIDKQGALLLEQD 303 (321)
T ss_dssp BTTTTSEEEEEET-TEEEEEEEEEECTTSCEEEEET
T ss_pred hhhcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEEC
Confidence 3468999999864 5689999999999999998654
No 47
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=70.67 E-value=4.6 Score=32.14 Aligned_cols=23 Identities=22% Similarity=0.640 Sum_probs=18.6
Q ss_pred HHHhcC--CEEEEEEeCCcEEEEEE
Q 023166 9 MLQFIN--YRMRVTIQDGRQLVGKF 31 (286)
Q Consensus 9 L~qlIg--kRVRVtLqDGR~fvGtL 31 (286)
+...|+ .+|+|+|.||+.+.||+
T Consensus 21 ~~~~LdGq~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 21 WVKLLDGQERVRIELDDGSMIAGTV 45 (101)
T ss_dssp HHHTSCTTCEEEEEETTSCEEEEEE
T ss_pred HHHhhCCeeEEEEEEcCCCeEeeee
Confidence 344454 69999999999999986
No 48
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=66.49 E-value=4.9 Score=31.03 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=35.9
Q ss_pred HHHHhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCceeEEe
Q 023166 8 KMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGEEVISM 84 (286)
Q Consensus 8 kL~qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGenIVSI 84 (286)
+|.-..++.|+|+|+||.+++|+.. | +...+-+||..+. ..-+...||=++|+++
T Consensus 19 ElAc~~~~~l~l~l~dGe~~~g~a~--D----~~~~~k~E~L~l~----------------~~~~~~~irLD~I~s~ 73 (86)
T 1sg5_A 19 ELACQHHLMLTLELKDGEKLQAKAS--D----LVSRKNVEYLVVE----------------AAGETRELRLDKITSF 73 (86)
T ss_dssp HHHHTTTTCEEEECTTTCCEEESSC--E----EECCSSSCEEEEE----------------ETTEEEEESTTCCSEE
T ss_pred HHHHHcCCeEEEEEeCCCEEEEEEE--e----eEEcCceEEEEEE----------------cCCCEEEEEchhhhhc
Confidence 3444568899999999999888532 2 3445555555432 1123556788888887
No 49
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=65.99 E-value=3.5 Score=36.37 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=24.0
Q ss_pred cCCEEEEEEeCCcEEEEEEEEeccccceEeCce
Q 023166 13 INYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDC 45 (286)
Q Consensus 13 IgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~ 45 (286)
++++|+|...|+ ++|+++++|.+-.|+|.+.
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~ 218 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRLD 218 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEECT
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEEC
Confidence 689999987766 9999999999999999653
No 50
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=56.95 E-value=19 Score=26.80 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=31.1
Q ss_pred cCCEEEEEEeCCcEEEEEEEEeccc---cceEeCceEEeecC
Q 023166 13 INYRMRVTIQDGRQLVGKFMAFDRH---MNLVLGDCEEFRKL 51 (286)
Q Consensus 13 IgkRVRVtLqDGR~fvGtLlAFDKh---MNLVLsD~eE~r~i 51 (286)
++.-|+.+-.||+.|.|+++.+|+. +=+...|-.+++.+
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~ 57 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVL 57 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred CCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCCEEEEE
Confidence 5778999999999999999999975 44555777777653
No 51
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=56.07 E-value=19 Score=26.28 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=30.1
Q ss_pred cCCEEEEEEeCCcEEEEEEEEeccc---cceEeCceEEeec
Q 023166 13 INYRMRVTIQDGRQLVGKFMAFDRH---MNLVLGDCEEFRK 50 (286)
Q Consensus 13 IgkRVRVtLqDGR~fvGtLlAFDKh---MNLVLsD~eE~r~ 50 (286)
.+..|.+.-+|||.|-||++.+|+. +=+...|-.|++.
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~ 46 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 46 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEE
Confidence 4678999999999999999999865 3455567766664
No 52
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=53.57 E-value=7.7 Score=29.91 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=32.0
Q ss_pred hcCCEEEEEEeCCcEEEEEEEEeccc---cceEeCceEEeecC
Q 023166 12 FINYRMRVTIQDGRQLVGKFMAFDRH---MNLVLGDCEEFRKL 51 (286)
Q Consensus 12 lIgkRVRVtLqDGR~fvGtLlAFDKh---MNLVLsD~eE~r~i 51 (286)
.++..|.++-+||+.|-||++.+|+. +=+...|-.|++..
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~ 70 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVL 70 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEEEE
Confidence 36788999999999999999999853 55666788777753
No 53
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=50.35 E-value=16 Score=34.69 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=28.4
Q ss_pred CEEEEEEeCCcEEEEEEEEeccccceEeCceE
Q 023166 15 YRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCE 46 (286)
Q Consensus 15 kRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~e 46 (286)
.+++|++.|+++|.++++++|.+.+|-|-..+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv~ 119 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQIQ 119 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEec
Confidence 58999999999999999999999998876654
No 54
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=49.55 E-value=16 Score=35.00 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=28.1
Q ss_pred CEEEEEEeCCcEEEEEEEEeccccceEeCceE
Q 023166 15 YRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCE 46 (286)
Q Consensus 15 kRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~e 46 (286)
.+|+|+|.|+++|..+++++|.+.+|-|-..+
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv~ 142 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQ 142 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEES
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEec
Confidence 37899999999999999999999998876554
No 55
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=48.84 E-value=16 Score=32.02 Aligned_cols=30 Identities=10% Similarity=0.169 Sum_probs=22.5
Q ss_pred EEEEEEeCCcEEEEEEEEeccccceEeCce
Q 023166 16 RMRVTIQDGRQLVGKFMAFDRHMNLVLGDC 45 (286)
Q Consensus 16 RVRVtLqDGR~fvGtLlAFDKhMNLVLsD~ 45 (286)
--.|++.++..++|+++++|.+-.|+|.+.
T Consensus 188 g~~V~v~~~~~~~G~~~gId~~G~L~v~~~ 217 (233)
T 2eay_A 188 GEEVKLLGEGKITGKLVGLSEKGGALILTE 217 (233)
T ss_dssp TSEEEETTEEEEEEEEEEECTTSCEEEEET
T ss_pred CCEEEEEECCeEEEEEEEECCCCeEEEEEC
Confidence 345666543339999999999999998653
No 56
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=47.26 E-value=12 Score=23.13 Aligned_cols=7 Identities=43% Similarity=1.065 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 023166 242 PRPGMPN 248 (286)
Q Consensus 242 ~~~~~~~ 248 (286)
+-+||.|
T Consensus 6 plPg~~g 12 (26)
T 2v8f_C 6 PLPGVAS 12 (26)
T ss_pred CCCCCCC
Confidence 3345555
No 57
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.79 E-value=22 Score=26.36 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=31.1
Q ss_pred cCCEEEEEEeCCcEEEEEEEEeccc---cceEeCceEEeecC
Q 023166 13 INYRMRVTIQDGRQLVGKFMAFDRH---MNLVLGDCEEFRKL 51 (286)
Q Consensus 13 IgkRVRVtLqDGR~fvGtLlAFDKh---MNLVLsD~eE~r~i 51 (286)
++..|.+.-.||+.|-|+++.+|++ +=+...|-.+++.+
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~ 51 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVL 51 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCSTTSEEEEEETTSCEEEEE
T ss_pred cCCEEEEEecCCCEEEEEEEEEecCCCEEEEEEccCceeEEE
Confidence 5778888889999999999999954 55555777777753
No 58
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.72 E-value=40 Score=25.30 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=31.0
Q ss_pred cCCEEEEEEeCCcEEEEEEEEeccc---cceEeCceEEeecC
Q 023166 13 INYRMRVTIQDGRQLVGKFMAFDRH---MNLVLGDCEEFRKL 51 (286)
Q Consensus 13 IgkRVRVtLqDGR~fvGtLlAFDKh---MNLVLsD~eE~r~i 51 (286)
++..|.+.-.||+.|-|+++.+|++ +=+...|-.+++..
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~ 53 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVL 53 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred cCCEEEEEecCCcEEEeEEEEEecCCcEEEEEEccCCeeeee
Confidence 5778888899999999999999954 34455787777753
No 59
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=44.37 E-value=1.7 Score=34.76 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=24.2
Q ss_pred HhcCCEEEEEEeCCcEEEEEEEEeccccceEeCceE
Q 023166 11 QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCE 46 (286)
Q Consensus 11 qlIgkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~e 46 (286)
+++..-|.....|| |+|.+||+..||.|+|+.
T Consensus 21 el~s~lVeWqY~d~----~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 21 DYISTYVEWQYIDK----NITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp HHHHTSCEEEEECS----SCEEECCTTHHHHHHHHH
T ss_pred HHHHHhhEEEEeCC----CeEeechHHHHHHHHHHH
Confidence 45555566666554 568999999999999884
No 60
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=42.02 E-value=22 Score=32.73 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=27.1
Q ss_pred CEEEEEEeCCcEEEEEEEEeccccceEeCce
Q 023166 15 YRMRVTIQDGRQLVGKFMAFDRHMNLVLGDC 45 (286)
Q Consensus 15 kRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~ 45 (286)
.+++|++.|++++.++++++|.+.+|-|-..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4788999999999999999999988877554
No 61
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=41.10 E-value=21 Score=31.37 Aligned_cols=32 Identities=19% Similarity=0.449 Sum_probs=27.0
Q ss_pred CEEEEEEeCCcEEEEEEEEeccccceEeCceE
Q 023166 15 YRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCE 46 (286)
Q Consensus 15 kRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~e 46 (286)
.+++|++.|++++..+++.+|...+|-|-..+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~ 119 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQIQ 119 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEES
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEec
Confidence 47899999999999999999999888765553
No 62
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=39.35 E-value=20 Score=28.15 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=23.7
Q ss_pred hhHHHHhcCCEEEEEEeCCcE----EEEEEEEe
Q 023166 6 SSKMLQFINYRMRVTIQDGRQ----LVGKFMAF 34 (286)
Q Consensus 6 ~skL~qlIgkRVRVtLqDGR~----fvGtLlAF 34 (286)
+.+|.++++++|+|+.+.||. -.|+|...
T Consensus 17 K~~l~~~vG~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 17 KEEIKAHEGQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHHHTTTSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHHHcCCCEEEEEecCCcccEEEEEEEEEEe
Confidence 567889999999999999984 46887653
No 63
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=38.44 E-value=30 Score=29.55 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=27.6
Q ss_pred CEEEEEEeCCcEEEEEEEEeccccceEeCceE
Q 023166 15 YRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCE 46 (286)
Q Consensus 15 kRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~e 46 (286)
.+++|++.|++.+..+++.+|.+.+|-|-..+
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l~ 108 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLKIN 108 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEec
Confidence 57999999999999999999999888775544
No 64
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=37.96 E-value=27 Score=31.29 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=27.6
Q ss_pred CEEEEEEeCCcEEEEEEEEeccccceEeCceE
Q 023166 15 YRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCE 46 (286)
Q Consensus 15 kRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~e 46 (286)
.+++|++.|++.+..+++.||.+.+|-|-..+
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl~ 95 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVVRVQ 95 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEEEEC
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEEEEC
Confidence 48999999999999999999999888775544
No 65
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=37.70 E-value=33 Score=29.42 Aligned_cols=33 Identities=18% Similarity=0.368 Sum_probs=28.3
Q ss_pred CCEEEEEEeCCcEEEEEEEEeccccceEeCceE
Q 023166 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCE 46 (286)
Q Consensus 14 gkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~e 46 (286)
..+++|++.|++.+..+++.+|...+|-|-..+
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l~ 118 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIKID 118 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEEec
Confidence 358999999999999999999998888775554
No 66
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=37.64 E-value=22 Score=33.97 Aligned_cols=32 Identities=28% Similarity=0.444 Sum_probs=27.9
Q ss_pred CEEEEEEeCCcEEEEEEEEeccccceEeCceE
Q 023166 15 YRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCE 46 (286)
Q Consensus 15 kRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~e 46 (286)
.+++|++.|+++|..+++++|.+.+|-|-..+
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~ 133 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKID 133 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEECC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEEc
Confidence 47899999999999999999999998776553
No 67
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=37.31 E-value=30 Score=30.95 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=27.8
Q ss_pred CEEEEEEeCCcEEEEEEEEeccccceEeCceEE
Q 023166 15 YRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47 (286)
Q Consensus 15 kRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~eE 47 (286)
.+++|++.|++.+..+++.+|.+.+|-|-..+.
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~~~ 98 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLIIKA 98 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEEEeC
Confidence 468999999999999999999998887765543
No 68
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=34.99 E-value=35 Score=30.81 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=27.4
Q ss_pred CEEEEEEeCCcEEEEEEEEeccccceEeCceE
Q 023166 15 YRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCE 46 (286)
Q Consensus 15 kRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~e 46 (286)
.+++|++.||+.+..+++.+|.+.+|-|-..+
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl~ 102 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRIQ 102 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEEEc
Confidence 47899999999999999999998888775554
No 69
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=33.86 E-value=9 Score=31.45 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.8
Q ss_pred CcEEEEEEEEeccccceEeCceEEeec
Q 023166 24 GRQLVGKFMAFDRHMNLVLGDCEEFRK 50 (286)
Q Consensus 24 GR~fvGtLlAFDKhMNLVLsD~eE~r~ 50 (286)
...+.|+|++.+..-+|.+.||.++-.
T Consensus 32 ~~~V~G~LLG~~~~~~veV~nsF~~p~ 58 (141)
T 4e0q_A 32 PRQVYGALIGKQKGRNIEIMNSFELKT 58 (141)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEECCE
T ss_pred CcEEEEEEEEEEeCCEEEEEEEEEecc
Confidence 478999999999888999999998765
No 70
>1x50_A Galectin-4; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.57 E-value=76 Score=26.40 Aligned_cols=59 Identities=10% Similarity=0.113 Sum_probs=40.5
Q ss_pred EEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCccccc-ceeEeceEEecCc-eeEEeeecCCC
Q 023166 20 TIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEERE-DRRTLGLVLLRGE-EVISMTVEGPP 90 (286)
Q Consensus 20 tLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~e-ekR~LGlVLIRGe-nIVSIsVe~PP 90 (286)
-++.|+.|+=+|++-+.+.-|.+.+...+...- +. ....+..+-|.|| .|.+|++++++
T Consensus 102 PF~~G~~F~l~I~~~~~~f~V~VNg~~~~~F~h------------R~~pl~~I~~l~I~GDv~l~sV~~~~~~ 162 (164)
T 1x50_A 102 PFGPGQFFDLSIRCGLDRFKVYANGQHLFDFAH------------RLSAFQRVDTLEIQGDVTLSYVQISGPS 162 (164)
T ss_dssp CCCTTSEEEEEEEECSSEEEEEESSSEEEEEEC------------CCGGGGGCCEEEEEESCEEEEEEEECTT
T ss_pred cccCCCeEEEEEEEcCCEEEEEECCEEEEEecC------------CCCCHHHCCEEEEeCCEEEEEEEEeCCC
Confidence 356788888888888888888888766544321 11 1244567778887 88888888764
No 71
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=30.82 E-value=66 Score=26.69 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=12.8
Q ss_pred hhHHHHhcCCEEEEEE
Q 023166 6 SSKMLQFINYRMRVTI 21 (286)
Q Consensus 6 ~skL~qlIgkRVRVtL 21 (286)
.+.|.+|++++|||..
T Consensus 35 ~s~L~~fvGk~VriVG 50 (142)
T 2pi2_E 35 AGMLAQFIDKPVCFVG 50 (142)
T ss_dssp GGGGGGSTTCEEEEEE
T ss_pred HHHHHhhCCCEEEEEE
Confidence 4567899999999864
No 72
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=29.61 E-value=48 Score=30.17 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=27.8
Q ss_pred CEEEEEEeCCcEEEEEEEEeccccceEeCceE
Q 023166 15 YRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCE 46 (286)
Q Consensus 15 kRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~e 46 (286)
.+++|++.|++.+..+++.+|.+.+|-|-..+
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl~ 108 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVLRID 108 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEEECC
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEEEEc
Confidence 57899999999999999999999888776554
No 73
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=28.68 E-value=70 Score=26.41 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=23.7
Q ss_pred CCEEEEEEeCCcEEEEEEEEeccccceEeCce
Q 023166 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDC 45 (286)
Q Consensus 14 gkRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~ 45 (286)
..+++|++ |++++..+++ +|....|-|-..
T Consensus 42 ~~~i~V~~-dg~~~~a~vv-~d~~~DlAlLkv 71 (163)
T 2w5e_A 42 NTFVNVCY-EGLMYEAKVR-YMPEKDIAFITC 71 (163)
T ss_dssp CSEEEEEE-TTEEEEEEEE-ECCSSSEEEEEC
T ss_pred CceEEEEE-CCEEEEEEEE-EECCCCEEEEEe
Confidence 35788888 9999999999 888777665444
No 74
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=28.11 E-value=61 Score=29.11 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=27.8
Q ss_pred CEEEEEEeCCcEEEEEEEEeccccceEeCceE
Q 023166 15 YRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCE 46 (286)
Q Consensus 15 kRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~e 46 (286)
.+++|++.|++.+..+++.+|.+.+|-|-..+
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~l~ 101 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIALIKID 101 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEEEEEC
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEEEEEc
Confidence 57999999999999999999999888775544
No 75
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=27.46 E-value=75 Score=23.85 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=20.3
Q ss_pred chhhhHHHHhcCCEEEEE-EeCCcEEEEEEEEeccccceEeCceE
Q 023166 3 MSKSSKMLQFINYRMRVT-IQDGRQLVGKFMAFDRHMNLVLGDCE 46 (286)
Q Consensus 3 ~~k~skL~qlIgkRVRVt-LqDGR~fvGtLlAFDKhMNLVLsD~e 46 (286)
++|++-+.+|++...... -..+.++.-++.--++..+|.|.|+.
T Consensus 13 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 57 (166)
T 3q72_A 13 VGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIW 57 (166)
T ss_dssp SSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC
T ss_pred CCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECC
Confidence 688888888887665322 22333443333222344455555553
No 76
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=27.25 E-value=33 Score=25.11 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=19.2
Q ss_pred CEEEEEEeCCcEEEEEEEEeccc
Q 023166 15 YRMRVTIQDGRQLVGKFMAFDRH 37 (286)
Q Consensus 15 kRVRVtLqDGR~fvGtLlAFDKh 37 (286)
.+|+|.|-||+.++.+|..-|.-
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl 30 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKL 30 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBH
T ss_pred EEEEEECCCCCEEEEEeCCCCCH
Confidence 47889999999999999877643
No 77
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=26.71 E-value=1.9e+02 Score=22.95 Aligned_cols=65 Identities=11% Similarity=0.181 Sum_probs=40.2
Q ss_pred EEEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCC----CcccccceeEeceEEecCceeEEeeecC
Q 023166 19 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNN----TNEEREDRRTLGLVLLRGEEVISMTVEG 88 (286)
Q Consensus 19 VtLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~----~~~e~eekR~LGlVLIRGenIVSIsVe~ 88 (286)
|+|++|.++.+.+.--|.. +.++|..+.+....+.+|... .+.. ...-..++||-++|++++--.
T Consensus 8 iRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~p---lsde~~~ii~~~~ViT~~e~~ 76 (100)
T 3by7_A 8 MRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQP---YTDDKEIVIDDSKVITITSPK 76 (100)
T ss_dssp EEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCT---TBCCSEEEEEGGGEEEEECBC
T ss_pred EEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccc---cCcCceEEEchhhEEEEEeCC
Confidence 6899999999999955542 788888887754322221100 0000 011347899999999997553
No 78
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=25.85 E-value=58 Score=31.66 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=18.5
Q ss_pred cCCEEEEEEeCC---cEEEEEEEE
Q 023166 13 INYRMRVTIQDG---RQLVGKFMA 33 (286)
Q Consensus 13 IgkRVRVtLqDG---R~fvGtLlA 33 (286)
++.+|||+..|+ .+|+|+|+-
T Consensus 14 ~gd~v~~~~~~~~~~~~~~g~~~~ 37 (438)
T 1zq1_A 14 VGDFVRITKEEDGEEVTYEGYIMP 37 (438)
T ss_dssp TTCEEEEEEESSSSEEECCEEECC
T ss_pred CCCEEEEEECCCcceeEEEEEEec
Confidence 468999999998 899999993
No 79
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.55 E-value=1.6e+02 Score=24.20 Aligned_cols=59 Identities=8% Similarity=0.143 Sum_probs=38.9
Q ss_pred EEeCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCccccc-ceeEeceEEecCc-eeEEeeecCCC
Q 023166 20 TIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEERE-DRRTLGLVLLRGE-EVISMTVEGPP 90 (286)
Q Consensus 20 tLqDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~e-ekR~LGlVLIRGe-nIVSIsVe~PP 90 (286)
-++.|+.|+=+|++-+++.-|.+.+...+...- +. ....+..+-|.|| .|.+|++.+.|
T Consensus 92 PF~~G~~F~l~I~~~~~~f~V~VNg~~~~~F~h------------R~~pl~~I~~l~I~Gdv~l~~V~~~~~~ 152 (155)
T 2yro_A 92 PFSPGMYFEMIIYCDVREFKVAVNGVHSLEYKH------------RFKELSSIDTLEINGDIHLLEVRSWSGP 152 (155)
T ss_dssp CCCTTSEEEEEEEECSSEEEEEETTEEEEEEEC------------CCSCGGGCCEEEEEESEEEEEEEEECCC
T ss_pred cccCCCeEEEEEEEcCCEEEEEECCEEEEEecC------------cCCCHHHCcEEEEeCCEEEEEEEEecCC
Confidence 345678888888888888788887765544321 11 1234566777887 77888887754
No 80
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=23.45 E-value=53 Score=32.69 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=26.0
Q ss_pred CEEEEEEe-CCcEEEEEEEEeccccceEeCce
Q 023166 15 YRMRVTIQ-DGRQLVGKFMAFDRHMNLVLGDC 45 (286)
Q Consensus 15 kRVRVtLq-DGR~fvGtLlAFDKhMNLVLsD~ 45 (286)
.+|+|++. |+|+|..+++++|...+|-|-..
T Consensus 97 ~~i~V~~~~dg~~~~A~vv~~D~~~DLAvLkv 128 (539)
T 4fln_A 97 TQVKVKRRGDDRKYVAKVLVRGVDCDIALLSV 128 (539)
T ss_dssp EEEEEECTTCCCCEEEEEEEEETTTTEEEEEE
T ss_pred CeEEEEEccCCEEEEEEEEEECCCCCEEEEEE
Confidence 47888885 99999999999999988876543
No 81
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=22.68 E-value=1.5e+02 Score=25.67 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=20.8
Q ss_pred CCEEEEEEeCCcEEEEEEEEeccccceEe
Q 023166 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVL 42 (286)
Q Consensus 14 gkRVRVtLqDGR~fvGtLlAFDKhMNLVL 42 (286)
+.+|+|.--+| .|.+++..+|+ .+.|
T Consensus 32 Gd~v~l~dg~g-~~~a~i~~~~~--~~~~ 57 (228)
T 1v6z_A 32 GDRFTVFDGER-EALAEVVDLGP--PLRY 57 (228)
T ss_dssp TCEEEEECSSC-EEEEEEEECCS--SCEE
T ss_pred CCEEEEEeCCc-EEEEEEEECCC--eEEE
Confidence 56788877778 99999999998 4444
No 82
>3doa_A Fibrinogen binding protein; structural genomics, MCSG., protein structure initiative, midwest center for structural genomics; 2.81A {Staphylococcus aureus subsp}
Probab=22.00 E-value=60 Score=29.36 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=13.8
Q ss_pred EEEEEEeccccceEeCceE
Q 023166 28 VGKFMAFDRHMNLVLGDCE 46 (286)
Q Consensus 28 vGtLlAFDKhMNLVLsD~e 46 (286)
+=++.-|.+|-||||.|.+
T Consensus 116 ~Li~El~gr~SNiIL~d~~ 134 (288)
T 3doa_A 116 TVILEIMGKHSNLILVDEN 134 (288)
T ss_dssp EEEEECCGGGCEEEEEETT
T ss_pred EEEEEEcCCCceEEEEcCC
Confidence 3344557789999999864
No 83
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Probab=21.96 E-value=66 Score=24.12 Aligned_cols=23 Identities=13% Similarity=0.040 Sum_probs=19.7
Q ss_pred CCEEEEEEeCCcEEEEEEEEecc
Q 023166 14 NYRMRVTIQDGRQLVGKFMAFDR 36 (286)
Q Consensus 14 gkRVRVtLqDGR~fvGtLlAFDK 36 (286)
|..|+|.+.+++.+++.+..|+.
T Consensus 74 d~~I~VEI~~~~~~isv~~~y~~ 96 (98)
T 2dir_A 74 QYTVVVEIIKAVCCLSVVKSGPS 96 (98)
T ss_dssp SEEEEEEEETTEEEEEEEECCCT
T ss_pred CEEEEEEEeCCEEEEEEcccccc
Confidence 45889999999999999988764
No 84
>3ap9_A Galectin-8; beta-sandwich, carbohydrate/sugar binding, lacto-N fucopentaose III, sugar binding protein; HET: GAL FUC NAG BGC; 1.33A {Homo sapiens} PDB: 3ap4_A 3ap5_A* 3ap6_A* 3ap7_A* 3apb_A 2yv8_A 2yxs_A*
Probab=21.28 E-value=1.7e+02 Score=23.76 Aligned_cols=55 Identities=7% Similarity=0.073 Sum_probs=29.3
Q ss_pred eCCcEEEEEEEEeccccceEeCceEEeecCCCCcCCCCCCcccccceeEeceEEecCc-eeEEeeecC
Q 023166 22 QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNTNEEREDRRTLGLVLLRGE-EVISMTVEG 88 (286)
Q Consensus 22 qDGR~fvGtLlAFDKhMNLVLsD~eE~r~ik~k~~kk~~~~~e~eekR~LGlVLIRGe-nIVSIsVe~ 88 (286)
+.|+.|+=++++-+.+.-|.+.+...+...- +.....+..+-|.|+ .|.+|+++.
T Consensus 98 ~~G~~F~l~I~~~~~~f~V~vng~~~~~F~h------------R~~~~~i~~l~I~Gdv~l~sv~~~~ 153 (154)
T 3ap9_A 98 KREKSFEIVIMVLKDKFQVAVNGKHTLLYGH------------RIGPEKIDTLGIYGKVNIHSIGFSF 153 (154)
T ss_dssp CTTCEEEEEEEECSSEEEEEETTEEEEEEEC------------SSCGGGCCEEEEEESCEEEEEEEEC
T ss_pred ccCCeEEEEEEEcCCEEEEEECCcEEEEECC------------CCCHHHCCEEEEeCCEEEEEEEEEC
Confidence 4566666666666666666666654433311 112234455666665 555665543
No 85
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=20.65 E-value=1.1e+02 Score=24.94 Aligned_cols=24 Identities=8% Similarity=0.137 Sum_probs=21.3
Q ss_pred cCCEEEEEEeCCcEEEEEEEEecc
Q 023166 13 INYRMRVTIQDGRQLVGKFMAFDR 36 (286)
Q Consensus 13 IgkRVRVtLqDGR~fvGtLlAFDK 36 (286)
++.+|+.+-+|||.|.|++++...
T Consensus 8 vGq~V~akh~ngryy~~~V~~~~~ 31 (118)
T 2qqr_A 8 AGQKVISKHKNGRFYQCEVVRLTT 31 (118)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEEE
T ss_pred cCCEEEEECCCCCEEeEEEEEEee
Confidence 789999999999999999888753
No 86
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=20.47 E-value=29 Score=30.18 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=26.3
Q ss_pred CEEEEEEeCCcEEEEEEEEeccccceEeCceE
Q 023166 15 YRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCE 46 (286)
Q Consensus 15 kRVRVtLqDGR~fvGtLlAFDKhMNLVLsD~e 46 (286)
.+++|++.|++++..+++.+|.+.+|-|-..+
T Consensus 80 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl~ 111 (239)
T 1l1j_A 80 DNITVTMLDGSKYDAEYIGGDEELDIAVIKIK 111 (239)
T ss_dssp SSCEEECTTSCEEEBCCCEEETTTTEEEEEBC
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEEc
Confidence 46788999999999999999988887765443
No 87
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=20.23 E-value=1.8e+02 Score=25.68 Aligned_cols=32 Identities=3% Similarity=0.039 Sum_probs=22.6
Q ss_pred CCEEEEEEeCCcEEEEEEEEeccc-cceEeCce
Q 023166 14 NYRMRVTIQDGRQLVGKFMAFDRH-MNLVLGDC 45 (286)
Q Consensus 14 gkRVRVtLqDGR~fvGtLlAFDKh-MNLVLsD~ 45 (286)
+.+|+|.--+|.+|.+++..+|+. ..+.+.+.
T Consensus 39 Gd~v~l~dg~g~~~~a~I~~~~~~~~~~~i~~~ 71 (257)
T 1vhy_A 39 GEQLELFDGSNHIYPAKIIESNKKSVKVEILGR 71 (257)
T ss_dssp TCEEEEECSSSEEEEEEEEEECSSCEEEEECCC
T ss_pred CCEEEEEcCCCCEEEEEEEEeeCCeEEEEEEEE
Confidence 567777666788999999999864 34444433
Done!