Citrus Sinensis ID: 023167

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
MQIPRWQNVLFLKNSLKISTLLSSTTPATTAAAAATSIHFVASFHSTPTSCEKWKNKWNADAKRAQQPSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDIGSDRKGQSKSSARRFGKPDLKRKKRKFRRESFSEDFDDPETIFQERFGNRWYSWTYQKREESSFQYSTSGFEWRKHSNRTDHRTKDWENESDIESDDEQCTVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS
Secondary Structure (PSIPRED)
ccccccHHHHHccccHHHHHccccccccccHHHHHHHHcHHccccccccHHHHHHccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHcccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHcccEEEHHHccccccccccccHHHccHHcccccccHHHHHHccccccccccccccccccEHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccEEEEEEcccccccccccccccEEccccccccccEccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mqiprwqnVLFLKNSLKISTllssttpatTAAAAATSIHFVasfhstptscekWKNKWNAdakraqqpsktyIRYQTRHKRADAKRALKDLLFrsgssnfsfqnedpiwkfdgncegdigsdrkgqskssarrfgkpdlkrkkrkfrresfsedfddpetifqerfgnrwyswtyqkreessfqystsgfewrkhsnrtdhrtkdwenesdiesddeqctvgsssdrtilglppsgplklddvKNAFRLSalkwhpdkhqgssqAMAEEKFKLCLNAYKSLCAALS
Flexible Loop (DISEMBL)
MQIPRWQNVLFLKNSLKISTLLSSTTPATTAAAAATSIHFVASFHSTPTSCEKWKNKWnadakraqqpsktyiryqtrhkRADAKRALKDLLFRsgssnfsfqnedpiWKFDGNCEGdigsdrkgqskssarrfgkpdlkrkkrkfrresfsedfddpetifqerfgnrWYSWTYQKREEssfqystsgfewrkhsnrtdhrtkdwenesdiesddeqctvgsssdrtilglppsgplkLDDVKNAFRLSALkwhpdkhqgssQAMAEEKFKLCLNAYKSLCAALS
Low Complexity Region (SEG)
MQIPRWQNVLFlknslkistllssttpattaaaaatsIHFVASFHSTPTSCEKWKNKWNADAKRAQQPSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDIGSDRKGQSKSSARRFGKPDLkrkkrkfrresfseDFDDPETIFQERFGNRWYSWTYQKREESSFQYSTSGFEWRKHSNRTDHRTKDWENESDIESDDEQCTVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS
Disordered region (IsUnstruct)
*************************************IHFVASFHSTPTSCEKWKNKW*************YIRY*************KDLLF********FQNEDPIWKFDGNC********************************************TIFQERFGNRWYSWTYQK*******************************************************************NAFRLSALKW***************KFKLCLNAYKSLCA***
Disordered Region (DISOPRED)
***PRWQNVLFLKNSLKISTLLSST******AAAATSIHFVASFHSTPTSCEK********************************RALKDLLFRSGS**************************************************RESFSEDFDDPETIFQERFGNRWYSWTYQK*************************************************RTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL*
Disordered Region (DISEMBL)
MQIPRWQNVLFLKNSLKISTLLSSTTPATTAAAAATSIHFVASFHSTPTSCEKWKNKW*********PSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDI***************GKPDLKRKKRKFRRESFSEDFDDPETIFQERFGNRWYSWTYQKREESSFQYSTSGFEW*********************************DRTILGLPPSGPLKLDDVKNAFRLSALKWH***********AEEKFKLCLNAYKSLCAALS
Disordered Region (DISPRO)
*QIPRWQNVLFLKNSLKISTLLSS******************SFHSTPTSCEKWK*************SKTYIRYQTRHKRADAKRALKDLLFRSGS***********************************************KFRRESFSEDFDDPETIFQERFGNRWYSWTYQKR********************************************SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQIPRWQNVLFLKNSLKISTLLSSTTPATTAAAAATSIHFVASFHSTPTSCEKWKNKWNADAKRAQQPSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDIGSDRKGQSKSSARRFGKPDLKRKKRKFRRESFSEDFDDPETIFQERFGNRWYSWTYQKREESSFQYSTSGFEWRKHSNRTDHRTKDWENESDIESDDEQCTVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
A9BNG6	380	Chaperone protein DnaJ OS	yes	no	0.143	0.107	0.512	0.0002
A1WAR7	376	Chaperone protein DnaJ OS	yes	no	0.178	0.135	0.433	0.0002
B9MDJ8	376	Chaperone protein DnaJ OS	yes	no	0.178	0.135	0.433	0.0004
A6LRN5	377	Chaperone protein DnaJ OS	yes	no	0.136	0.103	0.512	0.0006
B2TLZ8	373	Chaperone protein DnaJ OS	yes	no	0.136	0.104	0.512	0.0007
B2V2I6	373	Chaperone protein DnaJ OS	yes	no	0.136	0.104	0.512	0.0008

>sp|A9BNG6|DNAJ_DELAS Chaperone protein DnaJ OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=dnaJ PE=3 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 29/41 (70%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           DD+K A+R  A+K+HPD++QG +   AEEKFK    AY+ L
Sbjct: 19  DDIKKAYRKLAMKYHPDRNQGDAAREAEEKFKEAKEAYEML 59

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.
Delftia acidovorans (strain DSM 14801 / SPH-1) (taxid: 398578)

>sp|A1WAR7|DNAJ_ACISJ Chaperone protein DnaJ OS=Acidovorax sp. (strain JS42) GN=dnaJ PE=3 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 2/53 (3%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +LG+P +     D++K A+R  A+K+HPD++QG +   AEEKFK    AY+ L
Sbjct: 9   VLGVPKNA--SDDEIKKAYRKLAMKYHPDRNQGDAAKPAEEKFKEAKEAYEIL 59

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Acidovorax sp. (strain JS42) (taxid: 232721)

>sp|B9MDJ8|DNAJ_ACIET Chaperone protein DnaJ OS=Acidovorax ebreus (strain TPSY) GN=dnaJ PE=3 SV=1

 Score = 45.4 bits (106), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 2/53 (3%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +LG+P +     D++K A+R  A+K+HPD++QG +   AEEKFK    AY+ L
Sbjct: 9   VLGVPKNA--SDDELKKAYRKLAMKYHPDRNQGDAAKPAEEKFKEAKEAYEIL 59

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Acidovorax ebreus (strain TPSY) (taxid: 535289)

>sp|A6LRN5|DNAJ_CLOB8 Chaperone protein DnaJ OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=dnaJ PE=3 SV=1

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 31/41 (75%), Gaps = 2/41 (4%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           D++K AFR  A+K+HPD++QG+++  AEEKFK    AY+ L
Sbjct: 19  DEIKRAFRKLAVKYHPDRNQGNAE--AEEKFKEINEAYQVL 57

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (taxid: 290402)

>sp|B2TLZ8|DNAJ_CLOBB Chaperone protein DnaJ OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=dnaJ PE=3 SV=1

 Score = 44.7 bits (104), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 31/41 (75%), Gaps = 2/41 (4%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           D++K AFR  A+K+HPDK++G+++  AEEKFK    AY+ L
Sbjct: 19  DEIKKAFRKLAIKYHPDKNKGNTE--AEEKFKEINEAYQVL 57

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Clostridium botulinum (strain Eklund 17B / Type B) (taxid: 508765)

>sp|B2V2I6|DNAJ_CLOBA Chaperone protein DnaJ OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=dnaJ PE=3 SV=1

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 31/41 (75%), Gaps = 2/41 (4%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           D++K AFR  A+K+HPDK++G+++  AEEKFK    AY+ L
Sbjct: 19  DEIKKAFRKLAIKYHPDKNKGNTE--AEEKFKEINEAYQVL 57

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Clostridium botulinum (strain Alaska E43 / Type E3) (taxid: 508767)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
225431605	285	PREDICTED: uncharacterized protein LOC10	0.961	0.964	0.588	9e-77
356530728	262	PREDICTED: uncharacterized protein LOC10	0.898	0.980	0.553	5e-75
356509006	263	PREDICTED: uncharacterized protein LOC10	0.905	0.984	0.559	6e-75
118483161	268	unknown [Populus trichocarpa]	0.930	0.992	0.531	3e-71
255562395	255	heat shock protein binding protein, puta	0.762	0.854	0.586	5e-71
388513353	273	unknown [Medicago truncatula]	0.919	0.963	0.540	1e-70
224060447	267	predicted protein [Populus trichocarpa]	0.933	1.0	0.534	2e-70
224116654	264	predicted protein [Populus trichocarpa]	0.923	1.0	0.528	9e-70
449511167	283	PREDICTED: uncharacterized protein LOC10	0.933	0.943	0.523	1e-69
357464517	283	hypothetical protein MTR_3g095470 [Medic	0.919	0.929	0.529	4e-69

>gi|225431605|ref|XP_002282776.1| PREDICTED: uncharacterized protein LOC100267710 [Vitis vinifera] gi|296088617|emb|CBI37608.3| unnamed protein product [Vitis vinifera]

 Score =  292 bits (748), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 173/294 (58%), Positives = 204/294 (69%), Gaps = 19/294 (6%)

Query: 1   MQIPRWQNVLFLKNSLKISTLLSSTTPATTAAAAATSIHFVASFHSTPTSCEKWKNKWNA 60
           MQ+PRW+ V   KNSL         TP +  AA ++S HF +  HSTP + EKWKNKWN 
Sbjct: 1   MQVPRWRYVFISKNSL---------TPFSIRAAISSSSHFASF-HSTPVASEKWKNKWNH 50

Query: 61  DAKRAQQPSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDG------N 114
           D   + QPSK YIRY +R KR DA+RALKDLLF +GS  FSFQ+ED  WK DG       
Sbjct: 51  DFT-SHQPSKNYIRYASRQKRTDARRALKDLLFNNGSPKFSFQDEDSTWKIDGASSWDEE 109

Query: 115 CEGDIGSDRKGQSKSSARRFGKPDLKRKKRKFRRESFSEDFDDPETIFQERFGNR--WYS 172
            E    S++KG+ KSS RR  K    R +RKFR++ FSED   PETIF   FGNR  W +
Sbjct: 110 AEHSDSSNKKGRPKSSNRRGRKAQHNRFRRKFRKDYFSEDDYSPETIFHATFGNRNKWCT 169

Query: 173 WTYQKREESSFQYSTSGFEWRKHSNRTDHRTKDWENESDIESDDEQCTVGSSSDRTILGL 232
           W++     SSFQ STS FEWR  SNRT++R K+W+  S+ ESD E C VGS SDR +LGL
Sbjct: 170 WSFNSAGSSSFQSSTSAFEWRGQSNRTNNRNKEWDTGSETESDGESCVVGSYSDRRMLGL 229

Query: 233 PPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS 286
           PP+GPLK++DVKNAFRLSALKWHPDKHQG SQA AEEKFKLC+NAYKSLC ALS
Sbjct: 230 PPTGPLKIEDVKNAFRLSALKWHPDKHQGPSQATAEEKFKLCVNAYKSLCNALS 283

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530728|ref|XP_003533932.1| PREDICTED: uncharacterized protein LOC100787858 [Glycine max]

 Score =  286 bits (733), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 160/289 (55%), Positives = 195/289 (67%), Gaps = 32/289 (11%)

Query: 1   MQIPRWQNVLFLKNSLKISTLLSSTTPATTAAAAATSI-HFVASFHSTPTSCEKWKNKWN 59
           MQ+ RW+N+L               +P T A  +      F + FHSTP SC+KW NK+N
Sbjct: 1   MQLARWRNLL---------------SPKTHAIPSLMHFSEFHSEFHSTPYSCQKWNNKFN 45

Query: 60  ADAKRAQQPSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDI 119
           +D K+ QQPSK +I++ TR KRADAK+AL  LL+ +G+S FSF+ +         C    
Sbjct: 46  SDVKKCQQPSKNHIKFITRQKRADAKKALNSLLYNNGASKFSFEEK---------CGYQG 96

Query: 120 GSDRKGQSKSSARRFGKPDLKRKKRKFRRESFSEDFDD-PETIFQERFGNRWYSWTYQKR 178
               KGQ KS     GKP  K+ KRK RRE FSEDFD   E IFQ  FGN+WY+W++   
Sbjct: 97  RFSNKGQPKSGQHSGGKPQ-KKSKRKIRRECFSEDFDGHTEQIFQATFGNKWYTWSFNNW 155

Query: 179 EESSFQYSTSGFEWRKHSNRTDHRTKDWENESDIE-SDDEQCTVGSSSDRTILGLPPSGP 237
             SS ++STSGFEWR+HSNRT      W+NESD E  DD+ C  GSSSDRT+LGLPP+GP
Sbjct: 156 SSSSSEHSTSGFEWREHSNRTS----KWKNESDTEHEDDDSCCEGSSSDRTVLGLPPTGP 211

Query: 238 LKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS 286
           LK++DVKNAFRLSALKWHPDKHQG SQAMAEEKFKLC+NAYK+LC ALS
Sbjct: 212 LKIEDVKNAFRLSALKWHPDKHQGPSQAMAEEKFKLCVNAYKTLCNALS 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509006|ref|XP_003523243.1| PREDICTED: uncharacterized protein LOC100526896 [Glycine max]

 Score =  286 bits (733), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 161/288 (55%), Positives = 201/288 (69%), Gaps = 29/288 (10%)

Query: 1   MQIPRWQNVLFLKNSLKISTLLSSTTPATTAAAAATSIHFVASFHSTPTSCEKWKNKWNA 60
           MQ+ RW N+    +SLK   + S T             HF + FHSTP SC+KW NK+N+
Sbjct: 1   MQLARWPNL----SSLKTHVIASVT-------------HF-SQFHSTPCSCQKWNNKFNS 42

Query: 61  DAKRAQQPSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDIG 120
           D K+ QQPSK +I++ TR KRADAK+AL  LL+ +G+S FSF+ +   + + G    +  
Sbjct: 43  DVKKGQQPSKNHIKFITRQKRADAKKALNSLLYNNGASKFSFEEK---YGYQGRF-SNKD 98

Query: 121 SDRKGQSKSSARRFGKPDLKRKKRKFRRESFSEDFDD-PETIFQERFGNRWYSWTYQKRE 179
             + GQ KS     GKP  K+ KRK RRESFSEDFD   E IFQ  FGN+WY+W++    
Sbjct: 99  QPKSGQPKSGQHSGGKPQ-KKSKRKIRRESFSEDFDGHTEQIFQATFGNKWYTWSFNNWR 157

Query: 180 ESSFQYSTSGFEWRKHSNRTDHRTKDWENESDIE-SDDEQCTVGSSSDRTILGLPPSGPL 238
            SS ++STSGFEWR+HSNRT+     W+NESD E  DD+ C  GSSSDRT+LGLPP+GPL
Sbjct: 158 SSSSEHSTSGFEWREHSNRTN----KWKNESDTEHEDDDSCCEGSSSDRTVLGLPPTGPL 213

Query: 239 KLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS 286
           K++DVKNAFRLSALKWHPDKHQG SQAMAEEKFKLC+NAYK+LC AL+
Sbjct: 214 KIEDVKNAFRLSALKWHPDKHQGPSQAMAEEKFKLCVNAYKTLCNALA 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483161|gb|ABK93486.1| unknown [Populus trichocarpa]

 Score =  274 bits (701), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 152/286 (53%), Positives = 191/286 (66%), Gaps = 20/286 (6%)

Query: 1   MQIPRWQNVLFLKNSLKISTLLSSTTPATTAAAAATSIHFVASFHSTPTSCEKWKNKWNA 60
           MQ+PRW+NV+ LKNSL          PA++ +   T  HF AS HSTP +CEK K+K   
Sbjct: 3   MQMPRWRNVILLKNSL---------VPASSQSIT-TRTHF-ASIHSTPIACEKRKSKRVD 51

Query: 61  DAKRAQQPSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDIG 120
           D + +Q+PSK YI++  R KRAD KRALKDLL+ +G     FQ++DP+W  D   E   G
Sbjct: 52  DNRGSQKPSKDYIKFVRRQKRADEKRALKDLLYNNGPLRI-FQHKDPVWSSD--AEPPFG 108

Query: 121 SDRKGQSKSSARRFGKPDLKRKKRKFRRESFSEDFDDPETIFQERFGNRWYSWTYQKREE 180
           S RK   K+ AR   K    + + K RRES +ED  DPET+F   FGNRWY+W+      
Sbjct: 109 S-RKRNEKAYARSAKKYHQDKIRSKLRRESSAEDSGDPETVFHATFGNRWYTWS-----N 162

Query: 181 SSFQYSTSGFEWRKHSNRTDHRTKDWENESDIESDDEQCTVGSSSDRTILGLPPSGPLKL 240
            SFQ   SGFEWR+     D R K+W+   + ES +   +VGS SDRTILGLP +GPLK+
Sbjct: 163 KSFQGEPSGFEWREPPKWKDQRYKEWDANRETESGNASYSVGSHSDRTILGLPLTGPLKI 222

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS 286
           +DVKNAFRLSALKWHPDKHQG+SQA+A E+FKLC+NAYKSLC AL+
Sbjct: 223 EDVKNAFRLSALKWHPDKHQGASQAVAGERFKLCVNAYKSLCDALA 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562395|ref|XP_002522204.1| heat shock protein binding protein, putative [Ricinus communis] gi|223538575|gb|EEF40179.1| heat shock protein binding protein, putative [Ricinus communis]

 Score =  273 bits (699), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 149/254 (58%), Positives = 176/254 (69%), Gaps = 36/254 (14%)

Query: 63  KRAQQPSK---------TYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQ---------- 103
           +R QQPSK          YIRY  R KRADAKRALKDLLF+SG++  SFQ          
Sbjct: 8   RRFQQPSKFPDTEIFIQNYIRYAVRQKRADAKRALKDLLFKSGATKASFQSGQINYFIWV 67

Query: 104 -----------NEDPIWKFDGNCEGDIGSDRKGQSKSSARRFGKPDLKRKKRKFRRESFS 152
                      +E+PIW FD   E   G+D+K Q KSSAR   K +  + KRKFRRESF+
Sbjct: 68  VIHALLCTRTQDEEPIWSFDP--EQPKGTDKKRQPKSSARNSRKFNHNKMKRKFRRESFT 125

Query: 153 EDFDDPETIFQERFGNRWYSWTYQKREESSFQYSTSGFEWRKHSNRTDHRTKDWENESDI 212
           +D DDPET+FQ  FGNRWY+W++    ESSF+ ST GFEWR+H N+T HR K W   +D 
Sbjct: 126 DD-DDPETMFQATFGNRWYTWSFN---ESSFRSSTFGFEWREHPNQTHHRDKKWNFGTDT 181

Query: 213 ESDDEQCTVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFK 272
           ESD E C++GS  DRTILGLP SGPL+++DVKNAFR+SALKWHPDKHQG SQA AEEKFK
Sbjct: 182 ESDSESCSIGSYHDRTILGLPASGPLRIEDVKNAFRMSALKWHPDKHQGPSQAKAEEKFK 241

Query: 273 LCLNAYKSLCAALS 286
           LC+NAYKSLC ALS
Sbjct: 242 LCVNAYKSLCDALS 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513353|gb|AFK44738.1| unknown [Medicago truncatula]

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 159/294 (54%), Positives = 197/294 (67%), Gaps = 31/294 (10%)

Query: 1   MQIPRWQNVLFLKNSLKISTLLSSTTPATTAAAAATSIHFVASFHSTPTSCEKWKNKWNA 60
           MQI RW+N+L +KN +          P  +        HF A FHSTP SC KW +  N 
Sbjct: 1   MQIARWRNILSMKNHI---------IPPVS--------HFSA-FHSTPCSCHKWNS--NP 40

Query: 61  DAKRAQQ-PSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDI 119
           D+++ QQ PSK +IR+ TR KRADAK+ALK LL+  GSS FSF+++   WK DGN +   
Sbjct: 41  DSRKGQQQPSKDHIRFVTRQKRADAKKALKHLLYSGGSSRFSFEDKKTNWKLDGNSDARS 100

Query: 120 GS-DRKGQSKSSARRFGKPDLKRKKRKFRRESFSEDFD-DPETIFQERFGNRWYSWTYQK 177
            S   KGQ KS  R  GKP  K+ K+K RR+SF E+ D  PE +F   FGNR Y+W++  
Sbjct: 101 SSYSNKGQPKSGQRFGGKPQ-KKNKQKIRRQSFCEEGDGQPEQVFHATFGNRSYTWSFCN 159

Query: 178 REESSFQYSTSGFEWRKHSNRTDHRTKDWENESDIESDDEQ-----CTVGSSSDRTILGL 232
              SS ++S  GFEWR+H+N+T+ R K W++ SD E D        C VGSSSDRTILGL
Sbjct: 160 TNGSSSEHSKYGFEWREHTNKTN-RNK-WKSASDDEDDGNDKDDGSCRVGSSSDRTILGL 217

Query: 233 PPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS 286
           PP+GPLK++DVK AFRLSALKWHPDKHQG  QAMAEEKFKLC+NAYK+LC ALS
Sbjct: 218 PPTGPLKIEDVKIAFRLSALKWHPDKHQGPPQAMAEEKFKLCVNAYKTLCNALS 271

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060447|ref|XP_002300204.1| predicted protein [Populus trichocarpa] gi|222847462|gb|EEE85009.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 153/286 (53%), Positives = 191/286 (66%), Gaps = 19/286 (6%)

Query: 1   MQIPRWQNVLFLKNSLKISTLLSSTTPATTAAAAATSIHFVASFHSTPTSCEKWKNKWNA 60
           MQIPRW+NVL LKNSL +  L  S T         T  HF AS HSTP +C+K K+K + 
Sbjct: 1   MQIPRWRNVLILKNSL-VPALSQSIT---------TKNHF-ASIHSTPITCDKRKSKRDG 49

Query: 61  DAKRAQQPSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDIG 120
           D + +QQPSK YIRY  R K + AKRAL+ LL+ SG S  SFQ+ +PI  FD   E  +G
Sbjct: 50  DERGSQQPSKAYIRYSIRQKPSAAKRALQGLLYNSGVSRSSFQHIEPIQSFDA--EPSVG 107

Query: 121 SDRKGQSKSSARRFGKPDLKRKKRKFRRESFSEDFDDPETIFQERFGNRWYSWTYQKREE 180
           S RK + K++A+R  K    R + K RRESFS+DF DPETI +    N+ Y+     R  
Sbjct: 108 S-RKKKLKANAQRAKKYHQDRMRSKLRRESFSDDFGDPETISRATLKNKRYT-----RSN 161

Query: 181 SSFQYSTSGFEWRKHSNRTDHRTKDWENESDIESDDEQCTVGSSSDRTILGLPPSGPLKL 240
            SF    SGFEWR+     + R K W+  S+ E D+   +VGS SDRTILGLPP+GPLK+
Sbjct: 162 KSFGSEPSGFEWREPPKWKNRRYKGWDATSETEYDNTSYSVGSHSDRTILGLPPTGPLKI 221

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS 286
           +DVKNAFRLSALKWHPDKHQ +S A+AEEKFKLC++AYKS+C AL+
Sbjct: 222 EDVKNAFRLSALKWHPDKHQDASLAVAEEKFKLCVDAYKSICEALA 267

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116654|ref|XP_002331893.1| predicted protein [Populus trichocarpa] gi|222874642|gb|EEF11773.1| predicted protein [Populus trichocarpa]

 Score =  269 bits (688), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 150/284 (52%), Positives = 190/284 (66%), Gaps = 20/284 (7%)

Query: 3   IPRWQNVLFLKNSLKISTLLSSTTPATTAAAAATSIHFVASFHSTPTSCEKWKNKWNADA 62
           +PRW+NV+ LKNSL          PA++ +   T  HF AS HSTP +CEK K+K   D 
Sbjct: 1   MPRWRNVILLKNSL---------VPASSQSIT-TRTHF-ASIHSTPIACEKRKSKRVDDN 49

Query: 63  KRAQQPSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDIGSD 122
           + +Q+PSK YI++  R KRAD KRALKDLL+ +G     FQ++DP+W  D   E   GS 
Sbjct: 50  RGSQKPSKDYIKFVRRQKRADEKRALKDLLYNNGPLRI-FQHKDPVWSSD--AEPPFGS- 105

Query: 123 RKGQSKSSARRFGKPDLKRKKRKFRRESFSEDFDDPETIFQERFGNRWYSWTYQKREESS 182
           RK   K+ AR   K    + + K RRES +ED  DPET+F   FGNRWY+W+ +     S
Sbjct: 106 RKRNEKAYARSAKKYHQDKIRSKLRRESSAEDSGDPETVFHATFGNRWYTWSNK-----S 160

Query: 183 FQYSTSGFEWRKHSNRTDHRTKDWENESDIESDDEQCTVGSSSDRTILGLPPSGPLKLDD 242
           FQ   SGFEWR+     D R K+W+   + ES +   +VGS SDRTILGLP +GPLK++D
Sbjct: 161 FQGEPSGFEWREPPKWKDQRYKEWDANRETESGNASYSVGSHSDRTILGLPLTGPLKIED 220

Query: 243 VKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS 286
           VKNAFRLSALKWHPDKHQG+SQA+A E+FKLC+NAYKSLC AL+
Sbjct: 221 VKNAFRLSALKWHPDKHQGASQAVAGERFKLCVNAYKSLCDALA 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511167|ref|XP_004163882.1| PREDICTED: uncharacterized protein LOC101224255 [Cucumis sativus]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 154/294 (52%), Positives = 199/294 (67%), Gaps = 27/294 (9%)

Query: 1   MQIPRWQNVLFLKNSLKISTLLSSTTPATTAAAAATSIHFVASFHSTPTSCEKWKNKWNA 60
           M IPR++    L+NS   ST             AAT    VASFHSTPTSC+KW++KW  
Sbjct: 1   MLIPRFRPSFILQNSFIGSTF------------AATH---VASFHSTPTSCDKWRSKWKF 45

Query: 61  DAK-RAQQPSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGD- 118
           D     ++PSK+Y+RY TR KRADAK+ALK+LL+ SGS+   F  ++  W   G+   D 
Sbjct: 46  DGGGHGKEPSKSYVRYVTRQKRADAKKALKNLLYNSGST---FPKKESKWSLGGDWPSDE 102

Query: 119 ----IGSDRKGQSKSSARRFGKPDLKRKKRKFRRESFSEDF-DDPETIFQERFGNRWYSW 173
                  ++KG++KSS ++FGK   K+ K KF RESF+ +F +D ETIF   FG++ YSW
Sbjct: 103 SDQTSNCNKKGRAKSSTQKFGKSQHKKPKGKFGRESFANNFSNDHETIFHATFGDKSYSW 162

Query: 174 TYQKREESSFQYSTSGFEWRKHSNRTDHRTKDWENESDIESDDEQCT-VGSSSDRTILGL 232
           ++   +E+S Q ST GF W    N  + R K+W+N SD ESDDE+   VGS SDRTILGL
Sbjct: 163 SFGSFKETS-QDSTYGFGWTNPPNWKNQRAKEWDNLSDFESDDEETPDVGSCSDRTILGL 221

Query: 233 PPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS 286
           P +GPLK+++VK AFRLSALKWHPDKH GSS+AMAEEKFKLC++AY SLC+ALS
Sbjct: 222 PRTGPLKIEEVKTAFRLSALKWHPDKHPGSSKAMAEEKFKLCVSAYNSLCSALS 275

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464517|ref|XP_003602540.1| hypothetical protein MTR_3g095470 [Medicago truncatula] gi|355491588|gb|AES72791.1| hypothetical protein MTR_3g095470 [Medicago truncatula]

 Score =  267 bits (682), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 161/304 (52%), Positives = 198/304 (65%), Gaps = 41/304 (13%)

Query: 1   MQIPRWQNVLFLKNSLKISTLLSSTTPATTAAAAATSIHFVASFHSTPTSCEKWKNKWNA 60
           MQI RW+N+L +KN +          P  +        HF A FHSTP SC KW +  N 
Sbjct: 1   MQIARWRNILSMKNHI---------IPPVS--------HFSA-FHSTPCSCHKWNS--NP 40

Query: 61  DAKRAQQ-PSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDGNCEGDI 119
           D+++ QQ PSK +IR+ TR KRADAK+ALK LL+  GSS FSF+++   WK DGN +   
Sbjct: 41  DSRKGQQQPSKDHIRFVTRQKRADAKKALKHLLYSGGSSRFSFEDKKTNWKLDGNSDARS 100

Query: 120 GS-DRKGQSKSSARRFGKPDLKRKKRKFRRESFSEDFD-DPETIFQERFGNRWYSWTYQK 177
            S   KGQ KS  R  GKP  K+ KRK RR+SF E+ D  PE +F   FGNR Y+W++  
Sbjct: 101 SSYSNKGQPKSGQRFGGKPQ-KKNKRKIRRQSFCEEGDGQPEQVFHATFGNRSYTWSFCN 159

Query: 178 REESSFQYSTSGFEWRKHSNRTDHRTKDWENESDIESDDEQ-----CTVGSSSDRTILGL 232
              SS ++S  GFEWR+H+N+T+ R K W++ SD E D        C VGSSSDRTILGL
Sbjct: 160 TNGSSSEHSKYGFEWREHTNKTN-RNK-WKSASDDEDDGNDKDDGSCRVGSSSDRTILGL 217

Query: 233 PPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQ----------AMAEEKFKLCLNAYKSLC 282
           PP+GPLK++DVK AFRLSALKWHPDKHQG SQ          AMAEEKFKLC+NAYK+LC
Sbjct: 218 PPTGPLKIEDVKIAFRLSALKWHPDKHQGPSQVSFKYLFNLSAMAEEKFKLCVNAYKTLC 277

Query: 283 AALS 286
            ALS
Sbjct: 278 NALS 281

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
TAIR|locus:504955938	268	AT2G18465 "AT2G18465" [Arabido	0.818	0.873	0.408	1.7e-36
TAIR|locus:2064622	263	AT2G42080 "AT2G42080" [Arabido	0.811	0.882	0.324	8.7e-24
TAIR|locus:2095818	254	AT3G58020 [Arabidopsis thalian	0.702	0.791	0.357	2.8e-18
GENEDB_PFALCIPARUM|PFE0055c	402	PFE0055c "heat shock protein,	0.342	0.243	0.339	0.00032
UNIPROTKB|Q8I489	402	PFE0055c "Heat shock protein,	0.342	0.243	0.339	0.00032
UNIPROTKB|Q5T657	155	DNAJB5 "DnaJ homolog subfamily	0.167	0.309	0.490	0.00043
UNIPROTKB|B0CM59	277	DNAJB2 "DnaJ homolog, subfamil	0.174	0.180	0.452	0.00079
UNIPROTKB|Q58DD3	278	DNAJB2 "DnaJ (Hsp40) homolog,	0.174	0.179	0.452	0.00079
ZFIN|ZDB-GENE-040801-192	340	dnajb4 "DnaJ (Hsp40) homolog,	0.132	0.111	0.536	0.00089

TAIR|locus:504955938 AT2G18465 "AT2G18465" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 105/257 (40%), Positives = 137/257 (53%)

Query:    38 IHFVASFHSTPTSCEKWKNKWNA--DAKRAQQPSKTYIRYQTRHK---RADAKRALKDLL 92
             I F A FHST    EK ++++ +  D++  +    + IR+    K   R  AK+ +  LL
Sbjct:    27 IRF-APFHSTSVLSEKSRSRFGSARDSEGERSSKNSSIRFTCTVKEKGRTSAKKTVDKLL 85

Query:    93 FRSGSSNFSFQNEDPIWKFDGNCEGDIGSDRKGQSKSSARRFGKPDLXXXXXXXXXXXXX 152
             F  G  N   QNE   W F  +    +  DR  + KS   R  KP               
Sbjct:    86 FHRGI-NDPLQNE---WHFGPS---PLIRDRHMKKKSPPGRGKKPRDKKTKRWHREGNPD 138

Query:   153 XDFDDPETIFQERFGNRWYS-WTYQKREESSFQYSTSGFEWRKHSNRT--DHRTKDWENE 209
              DF    T     F N+W   WT Q ++ S  + ST+GFEWR+  + T    R+K W  E
Sbjct:   139 DDFG---TDANNTFENKWRERWTAQSQKASYSKDSTAGFEWREGWSWTTQSQRSKSWNKE 195

Query:   210 SDIESDDEQCTVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEE 269
             S     DE   V   S+R +LGLP  GP+K+DDVKNAFR SALKWHPDKHQG SQ  A+E
Sbjct:   196 SF----DEPLNVEFRSERIVLGLPLDGPIKVDDVKNAFRSSALKWHPDKHQGPSQVAAQE 251

Query:   270 KFKLCLNAYKSLCAALS 286
             KFKLC++AYKSLC+AL+
Sbjct:   252 KFKLCVDAYKSLCSALA 268

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2064622 AT2G42080 "AT2G42080" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 82/253 (32%), Positives = 123/253 (48%)

Query:    42 ASFHSTPTSCEKWKNKWNADAKRAQQPSKTYIRYQTRHKRADAKRALKDLLFRSGSSNFS 101
             A FHSTP    K +  W +   +A    K + R + + +      A    +F S    F 
Sbjct:    22 AFFHSTPVLERKRRTSWES---KANVHKKRFRRMREKQELLRNVNAFAANMFTSWHDEFD 78

Query:   102 FQNEDPIWKFDGNC-EGDIGSDRKGQ--SKSSARRFGKPDLXXXXXXXXXXXXXXDFDDP 158
               ++ P  +   +  +     + KG   +K     +GK +               DFD  
Sbjct:    79 --DDGPSSRKQTSWFKKQYSKEPKGNQNNKHGPYTWGKRNFDFCEVDE-------DFD-V 128

Query:   159 ETIFQERFG-NRWYSWTYQKRE-ESSFQYSTSGFEWRKHSN-RTDHRTKDWENESDIESD 215
             + +F+  FG +R +S+++   E E  +++ +S F    + + R+ +R  + E E D  SD
Sbjct:   129 DYVFRTAFGGSRGFSFSFTHEEDEPRWRHHSSRFSNNSNRSWRSKYRLDEDEEEEDYTSD 188

Query:   216 --DEQCTVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKL 273
               D +      S R  LGL PSGPL L DVK+A+R  ALKWHPD+HQGS++  AE KFKL
Sbjct:   189 SSDSESEPNQVSHRQALGLSPSGPLNLKDVKHAYRTCALKWHPDRHQGSTKEAAEAKFKL 248

Query:   274 CLNAYKSLCAALS 286
             C  AY+SLC  LS
Sbjct:   249 CSVAYQSLCEKLS 261

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2095818 AT3G58020 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 80/224 (35%), Positives = 110/224 (49%)

Query:    76 QTRHKRADAKRALKDLLFRSGSSNFSFQNEDPIWKFDG-NCEGDIGS-DRKGQSKSSAR- 132
             + R KR   K+A +DL  R   + F+ Q+   IW  DG +  G   S   K  S+ S R 
Sbjct:    39 KARSKRFGRKKAKQDL--RRNVNAFA-QHLFGIWS-DGFDYSGKHTSWFEKQYSRVSKRN 94

Query:   133 RFGKPDLXXXXXXXXXXXXXXDFDDPETIFQ-ERF------GNRWYSWTYQKREES-SFQ 184
             R GK  +              DF + +  +Q E F      G+R +SW+  +   + S +
Sbjct:    95 RNGKTHIPQHLDKRCF-----DFSEVDEGYQIEYFLKTALGGSRGFSWSNTREGGTRSGR 149

Query:   185 YSTSGFE-WRKHSNRTDHRTKDWENESDIESDDEQCTV-GSSSDRTILGLPPSGPLKLDD 242
             YS +  + W     R D   ++ E E +  S     T     S R  LGL  SGPL L+D
Sbjct:   150 YSNNFRKSWGSRY-RLDEEEEEEEEEYEYSSTGVSDTEPNQESHRQTLGLSSSGPLNLED 208

Query:   243 VKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS 286
             VK A+R  ALKWHPD+H  S++  AEEKFKLC  AY+SLC  L+
Sbjct:   209 VKIAYRACALKWHPDRHHTSTKNEAEEKFKLCTVAYQSLCEKLA 252

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GENEDB_PFALCIPARUM|PFE0055c PFE0055c "heat shock protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 115 (45.5 bits), Expect = 0.00032, P = 0.00032
 Identities = 38/112 (33%), Positives = 52/112 (46%)

Query:   182 SFQYSTSGFEWRKHS----NRTDHRTK--DWEN-ESDIESDDEQCTVGSSSDRT----IL 230
             + +Y   G  + KH+    N     TK  D+ +  S  E +       S +D T    +L
Sbjct:    26 TLEYVLIGSNYDKHNQSFGNEIFKNTKVFDFTSLRSLAEFNSGSSRESSKTDETDYYAVL 85

Query:   231 GLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAM-AEEKFKLCLNAYKSL 281
             GL        DD+K A+R  A+KWHPDKH      + AE KFKL   AY+ L
Sbjct:    86 GLTKD--CTQDDIKKAYRKLAMKWHPDKHLNDEDKVEAERKFKLIGEAYEVL 135

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q8I489 PFE0055c "Heat shock protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 115 (45.5 bits), Expect = 0.00032, P = 0.00032
 Identities = 38/112 (33%), Positives = 52/112 (46%)

Query:   182 SFQYSTSGFEWRKHS----NRTDHRTK--DWEN-ESDIESDDEQCTVGSSSDRT----IL 230
             + +Y   G  + KH+    N     TK  D+ +  S  E +       S +D T    +L
Sbjct:    26 TLEYVLIGSNYDKHNQSFGNEIFKNTKVFDFTSLRSLAEFNSGSSRESSKTDETDYYAVL 85

Query:   231 GLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAM-AEEKFKLCLNAYKSL 281
             GL        DD+K A+R  A+KWHPDKH      + AE KFKL   AY+ L
Sbjct:    86 GLTKD--CTQDDIKKAYRKLAMKWHPDKHLNDEDKVEAERKFKLIGEAYEVL 135

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q5T657 DNAJB5 "DnaJ homolog subfamily B member 5" [Homo sapiens (taxid:9606)]

 Score = 103 (41.3 bits), Expect = 0.00043, P = 0.00043
 Identities = 26/53 (49%), Positives = 35/53 (66%)

Query:   229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
             ILG+P SG  + D++K A+R  ALK+HPDK++   +  AEEKFK    AY  L
Sbjct:     8 ILGIP-SGANE-DEIKKAYRKMALKYHPDKNK---EPNAEEKFKEIAEAYDVL 55

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|B0CM59 DNAJB2 "DnaJ homolog, subfamily B, member 2, isoform 1 (Predicted)" [Papio anubis (taxid:9555)]

 Score = 109 (43.4 bits), Expect = 0.00079, P = 0.00079
 Identities = 24/53 (45%), Positives = 33/53 (62%)

Query:   229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
             IL +P S     DD+K A+R  AL+WHPDK+  + +  AE+KFK    AY+ L
Sbjct:     7 ILDVPRSA--SADDIKKAYRRKALQWHPDKNPDNKE-FAEKKFKEVAEAYEVL 56

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

UNIPROTKB|Q58DD3 DNAJB2 "DnaJ (Hsp40) homolog, subfamily B, member 2" [Bos taurus (taxid:9913)]

 Score = 109 (43.4 bits), Expect = 0.00079, P = 0.00079
 Identities = 24/53 (45%), Positives = 33/53 (62%)

Query:   229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
             IL +P S     DD+K A+R  AL+WHPDK+  + +  AE+KFK    AY+ L
Sbjct:     7 ILDVPRSA--SADDIKKAYRKKALQWHPDKNPDNKE-FAEKKFKEVAEAYEVL 56

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

GO:0090086 "negative regulation of protein deubiquitination" evidence=IEA

GO:0090084 "negative regulation of inclusion body assembly" evidence=IEA

GO:0070628 "proteasome binding" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0016234 "inclusion body" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

ZFIN|ZDB-GENE-040801-192 dnajb4 "DnaJ (Hsp40) homolog, subfamily B, member 4" [Danio rerio (taxid:7955)]

 Score = 110 (43.8 bits), Expect = 0.00089, P = 0.00089
 Identities = 22/41 (53%), Positives = 29/41 (70%)

Query:   241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
             DD+K A+R  ALKWHPDK++ ++   AEEKFK    AY+ L
Sbjct:    18 DDIKKAYRKQALKWHPDKNKAAN---AEEKFKEVAEAYEVL 55


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      286       246    0.0010  113 3  11 22  0.47    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  619 (66 KB)
  Total size of DFA:  240 KB (2127 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.38u 0.13s 23.51t   Elapsed:  00:00:01
  Total cpu time:  23.39u 0.13s 23.52t   Elapsed:  00:00:01
  Start:  Sat May 11 14:00:49 2013   End:  Sat May 11 14:00:50 2013

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	286
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	2e-10
pfam00226	63	pfam00226, DnaJ, DnaJ domain	3e-08
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	8e-08
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	7e-07
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	3e-06
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	3e-06
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	2e-05
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	2e-05
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	5e-05
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	1e-04
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	2e-04
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	3e-04
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	0.001
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	0.001
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	0.001
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	0.002
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	0.003
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	0.003
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	0.004
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	0.004

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 282
           ILG+P    L  D++K A+R  ALK+HPDK+ G  +  AEEKFK    AY+ L 
Sbjct: 6   ILGVPRDASL--DEIKKAYRKLALKYHPDKNPG-DKEEAEEKFKEINEAYEVLS 56

Length = 60

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 49.1 bits (118), Expect = 3e-08
 Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 282
           ILG+P       +++K A+R  ALK+HPDK+ G     AEEKFK    AY+ L 
Sbjct: 5   ILGVPRDASD--EEIKKAYRKLALKYHPDKNPGDPA--AEEKFKEINEAYEVLS 54

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 47.5 bits (114), Expect = 8e-08
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 282
           ILG+PP      +++K A+R  ALK+HPDK+    +  AEEKFK    AY+ L 
Sbjct: 5   ILGVPPD--ASDEEIKKAYRKLALKYHPDKNPDDPE--AEEKFKEINEAYEVLS 54

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAY 278
           +++K A+R  A K+HPD++ G  +  AEEKFK    AY
Sbjct: 19  EEIKKAYRKLAKKYHPDRNPGDKE--AEEKFKEINEAY 54

Length = 371

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 21/41 (51%), Positives = 30/41 (73%), Gaps = 2/41 (4%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           D++K AFR  A+K+HPDK++G+ +  AEEKFK    AY+ L
Sbjct: 19  DEIKKAFRKLAIKYHPDKNKGNKE--AEEKFKEINEAYQVL 57

Length = 380

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 47.8 bits (115), Expect = 3e-06
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 2/38 (5%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAY 278
           D++K A+R  A+K+HPD++ G  +  AEEKFK    AY
Sbjct: 19  DEIKKAYRKLAMKYHPDRNPGDKE--AEEKFKEIKEAY 54

Length = 371

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 22/41 (53%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +D+K AFR  A KWHPD H G+    AEEKFK    AY+ L
Sbjct: 18  EDIKKAFRELAKKWHPDLHPGNKAE-AEEKFKEISEAYEVL 57

Length = 365

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAY 278
           ILG+        +++K A+R  A K+HPD+++      AEEKFK    AY
Sbjct: 5   ILGVSKDA--SEEEIKKAYRKLAKKYHPDRNK---DKEAEEKFKEINEAY 49

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 240 LDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +D++K A+R  A+++HPDK+ G  +  AEEKFK    AY  L
Sbjct: 19  VDEIKKAYRKKAIQYHPDKNPGDKE--AEEKFKEAAEAYDVL 58

Length = 386

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 2/41 (4%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           D++K A+R  ALK+HPDK+  + +  AEE FK    AY+ L
Sbjct: 18  DEIKKAYRKLALKYHPDKNPDNKE--AEEHFKEVNEAYEVL 56

Length = 397

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 18/41 (43%), Positives = 31/41 (75%), Gaps = 2/41 (4%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +++K+A+R  A+K+HPDK++G+ +  +EEKFK    AY+ L
Sbjct: 19  EEIKSAYRKLAIKYHPDKNKGNKE--SEEKFKEATEAYEIL 57

Length = 372

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           ILGL       ++D+K A+R  A+K+HPDK   + +  AEEKFK    AY  L
Sbjct: 10  ILGLSKDA--SVEDIKKAYRKLAMKYHPDK---NKEPDAEEKFKEISEAYAVL 57

Length = 377

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 282
           +++K ++R  A+K+HPD++ G  +  AEE FK    AY+ L 
Sbjct: 19  EEIKKSYRKLAMKYHPDRNPGDKE--AEELFKEAAEAYEVLS 58

Length = 366

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           I+G+ P+  LK   +K A+R  A K+HPD    S +  AE +FK    A++ L
Sbjct: 9   IMGVKPTDDLK--TIKTAYRRLARKYHPDV---SKEPDAEARFKEVAEAWEVL 56

Length = 306

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +++K A+R  A+K+HPDK+ G   A AE++FK    AY+ L
Sbjct: 16  EEIKKAYRKLAVKYHPDKNPGD--AEAEKRFKEVSEAYEVL 54

Length = 391

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +LG+P        ++K A+R  A ++HPD ++G ++  AEE+FK    AY  L
Sbjct: 14  VLGVPKDATE--AEIKKAYRKLAREYHPDANKGDAK--AEERFKEISEAYDVL 62

Length = 389

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           ILG+  +     +++K A++    +WHPD+H  + +  AE+KFK    AY+ L
Sbjct: 9   ILGVSRNA--TQEEIKRAYKRLVKEWHPDRHPENRK-EAEQKFKEIQEAYEVL 58

Length = 369

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           D++K+A+R  ALK+HPD+++   +  A EKF     AY  L
Sbjct: 17  DEIKSAYRKLALKYHPDRNK---EKGAAEKFAQINEAYAVL 54

Length = 371

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           D++K A+R  AL++HPD++  + +  AE+KFK    AY+ L
Sbjct: 19  DEIKKAYRKLALQYHPDRNPDNPE--AEQKFKEAAEAYEVL 57

Length = 373

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           ILGL  S     D++K A+R  A+K+HPDK++G+ +  AE  FK    AY+ L
Sbjct: 8   ILGL--SKGASKDEIKKAYRKIAIKYHPDKNKGNKE--AESIFKEATEAYEVL 56

Length = 365

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.77
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.7
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.62
PRK14288	369	chaperone protein DnaJ; Provisional	99.62
PRK14296	372	chaperone protein DnaJ; Provisional	99.61
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.58
PRK14286	372	chaperone protein DnaJ; Provisional	99.57
PRK14279	392	chaperone protein DnaJ; Provisional	99.57
PRK14282	369	chaperone protein DnaJ; Provisional	99.56
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.54
PRK14287	371	chaperone protein DnaJ; Provisional	99.54
PRK14285	365	chaperone protein DnaJ; Provisional	99.53
PRK14283	378	chaperone protein DnaJ; Provisional	99.53
PRK14297	380	chaperone protein DnaJ; Provisional	99.53
PRK14276	380	chaperone protein DnaJ; Provisional	99.53
PRK14277	386	chaperone protein DnaJ; Provisional	99.52
PRK14295	389	chaperone protein DnaJ; Provisional	99.52
PRK14294	366	chaperone protein DnaJ; Provisional	99.52
PRK14299	291	chaperone protein DnaJ; Provisional	99.52
PRK14301	373	chaperone protein DnaJ; Provisional	99.52
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.52
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.51
PRK14280	376	chaperone protein DnaJ; Provisional	99.51
PRK14278	378	chaperone protein DnaJ; Provisional	99.51
PRK10767	371	chaperone protein DnaJ; Provisional	99.51
PRK14298	377	chaperone protein DnaJ; Provisional	99.5
PRK14281	397	chaperone protein DnaJ; Provisional	99.49
PRK14291	382	chaperone protein DnaJ; Provisional	99.49
PRK14290	365	chaperone protein DnaJ; Provisional	99.47
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.47
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.46
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.46
PRK14289	386	chaperone protein DnaJ; Provisional	99.46
PRK14300	372	chaperone protein DnaJ; Provisional	99.42
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.42
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.42
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.4
PRK14293	374	chaperone protein DnaJ; Provisional	99.4
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.37
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.34
PRK05014	171	hscB co-chaperone HscB; Provisional	99.32
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.31
PHA03102	153	Small T antigen; Reviewed	99.31
PRK00294	173	hscB co-chaperone HscB; Provisional	99.3
PRK01356	166	hscB co-chaperone HscB; Provisional	99.26
PRK03578	176	hscB co-chaperone HscB; Provisional	99.25
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.24
PTZ00100	116	DnaJ chaperone protein; Provisional	99.24
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.11
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.07
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.06
PHA02624	647	large T antigen; Provisional	98.98
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.97
PRK01773	173	hscB co-chaperone HscB; Provisional	98.89
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	98.87
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.8
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	98.67
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.59
PRK14284	391	chaperone protein DnaJ; Provisional	98.58
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	98.49
PRK14292	371	chaperone protein DnaJ; Provisional	98.45
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.16
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.15
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	98.04
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	97.67
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.56
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	96.79
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.76
KOG0431	453	consensus Auxilin-like protein and related protein	96.36
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	95.86
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	90.67
PF13446	62	RPT: A repeated domain in UCH-protein	85.73
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	85.36
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	80.96

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=3.2e-19  Score=172.40  Aligned_cols=61  Identities=34%  Similarity=0.516  Sum_probs=57.4

Q ss_pred             CccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          222 GSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       222 ~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ...|||+||||+++|  +.+|||+|||+||++||||+|+++  ++|+++|++|++||+||+||+|
T Consensus         2 ~~~dyYeiLGV~k~A--s~~EIKkAYRkLA~kyHPD~n~g~--~~AeeKFKEI~eAYEVLsD~eK   62 (371)
T COG0484           2 AKRDYYEILGVSKDA--SEEEIKKAYRKLAKKYHPDRNPGD--KEAEEKFKEINEAYEVLSDPEK   62 (371)
T ss_pred             CccchhhhcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhCCHHH
Confidence            357999999999999  999999999999999999999974  6899999999999999999985

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.2e-17  Score=159.02  Aligned_cols=61  Identities=34%  Similarity=0.509  Sum_probs=57.8

Q ss_pred             CccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          222 GSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       222 ~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..+|||+||||+.+|  +..|||+|||+|||+||||||+++  +.|.++|++|+.||+||+||.+
T Consensus        14 ~~rDfYelLgV~k~A--sd~eIKkAYRKLALk~HPDkNpdd--p~A~e~F~~in~AYEVLsDpek   74 (336)
T KOG0713|consen   14 AGRDFYELLGVPKNA--SDQEIKKAYRKLALKYHPDKNPDD--PNANEKFKEINAAYEVLSDPEK   74 (336)
T ss_pred             cCCCHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhcCHHH
Confidence            348999999999999  999999999999999999999998  6899999999999999999974

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.62  E-value=1.2e-15  Score=109.56  Aligned_cols=60  Identities=43%  Similarity=0.665  Sum_probs=55.5

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .++|+||||++++  +.++|+++|+++++.+|||++++. .+.+++.|++|++||++|+||.+
T Consensus         1 ~~~y~vLgl~~~~--~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        1 TDYYEILGVPRDA--SLDEIKKAYRKLALKYHPDKNPGD-KEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHHHcCCCC
Confidence            3799999999999  999999999999999999999864 56899999999999999999864

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=4e-16  Score=150.50  Aligned_cols=59  Identities=37%  Similarity=0.528  Sum_probs=55.0

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .|||+||||+++|  +.+|||+|||+||++||||+++++  +.|+++|++|++||++|+||.|
T Consensus         3 ~dyY~vLgv~~~A--s~~eIkkayrkla~k~HPD~~~~~--~~a~~~f~~i~~AYevLsd~~k   61 (369)
T PRK14288          3 LSYYEILEVEKHS--NQETIKKSYRKLALKYHPDRNAGD--KEAEEKFKLINEAYGVLSDEKK   61 (369)
T ss_pred             CChHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc--cHHHHHHHHHHHHHHHhccHHH
Confidence            5999999999999  999999999999999999999864  3689999999999999999974

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=5.5e-16  Score=149.83  Aligned_cols=59  Identities=20%  Similarity=0.293  Sum_probs=55.0

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..|||+||||++++  +.+|||+|||+||++||||++++.   .|+++|++|++||++|+||.|
T Consensus         3 ~~dyY~~Lgv~~~a--~~~eik~ayrkla~~~HPD~n~~~---~a~~~F~~i~~AyevLsD~~K   61 (372)
T PRK14296          3 KKDYYEVLGVSKTA--SEQEIRQAYRKLAKQYHPDLNKSP---DAHDKMVEINEAADVLLDKDK   61 (372)
T ss_pred             CCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc---hHHHHHHHHHHHHHHhcCHHH
Confidence            46999999999999  999999999999999999999753   689999999999999999975

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.58  E-value=3.9e-15  Score=104.90  Aligned_cols=55  Identities=44%  Similarity=0.675  Sum_probs=51.7

Q ss_pred             ccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhc
Q 023167          225 SDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCA  283 (286)
Q Consensus       225 d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsD  283 (286)
                      +||+||||++++  +.++|+++||+|+++||||++++.  +.+.+.|++|++||++|+|
T Consensus         1 ~~y~vLgl~~~~--~~~~ik~~y~~l~~~~HPD~~~~~--~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDA--SDEEIKKAYRKLALKYHPDKNPDD--PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcC
Confidence            689999999999  999999999999999999999874  5789999999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=2.1e-15  Score=145.64  Aligned_cols=60  Identities=38%  Similarity=0.579  Sum_probs=55.4

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..|||+||||++++  +.+|||+|||+||++||||+++++  +.|+++|++|++||+||+||.+
T Consensus         3 ~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~k   62 (372)
T PRK14286          3 ERSYYDILGVSKSA--NDEEIKSAYRKLAIKYHPDKNKGN--KESEEKFKEATEAYEILRDPKK   62 (372)
T ss_pred             CCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhccHHH
Confidence            36999999999999  999999999999999999999864  4689999999999999999874

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.57  E-value=2.4e-15  Score=146.32  Aligned_cols=59  Identities=29%  Similarity=0.421  Sum_probs=55.5

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .|||+||||++++  +.+|||+|||+||++||||+++++  +.|+++|++|++||++|+||.|
T Consensus         9 ~Dyy~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vLsD~~K   67 (392)
T PRK14279          9 KDFYKELGVSSDA--SAEEIKKAYRKLARELHPDANPGD--PAAEERFKAVSEAHDVLSDPAK   67 (392)
T ss_pred             cCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhcchhh
Confidence            6999999999999  999999999999999999999864  4689999999999999999975

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=3.7e-15  Score=143.69  Aligned_cols=61  Identities=30%  Similarity=0.540  Sum_probs=55.9

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..|||+||||++++  +.+|||+|||+||++||||++++. +..|+++|++|++||++|+||.+
T Consensus         3 ~~d~y~~lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~vL~d~~k   63 (369)
T PRK14282          3 KKDYYEILGVSRNA--TQEEIKRAYKRLVKEWHPDRHPEN-RKEAEQKFKEIQEAYEVLSDPQK   63 (369)
T ss_pred             CCChHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCccc-hhHHHHHHHHHHHHHHHhcChhh
Confidence            46999999999999  999999999999999999999764 34689999999999999999974

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.54  E-value=8.7e-15  Score=106.79  Aligned_cols=58  Identities=40%  Similarity=0.631  Sum_probs=54.1

Q ss_pred             ccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          225 SDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       225 d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ++|+||||++++  +.++|+++|+++++.+|||++++.. ..+++.|.+|++||++|+||.
T Consensus         1 ~~y~iLgl~~~~--~~~eik~~y~~l~~~~HPD~~~~~~-~~~~~~~~~i~~Ay~~L~~~~   58 (64)
T PF00226_consen    1 NPYEILGLPPDA--SDEEIKKAYRRLSKQYHPDKNSGDE-AEAEEKFARINEAYEILSDPE   58 (64)
T ss_dssp             HHHHHCTSTTTS--SHHHHHHHHHHHHHHTSTTTGTSTH-HHHHHHHHHHHHHHHHHHSHH
T ss_pred             ChHHHCCCCCCC--CHHHHHHHHHhhhhccccccchhhh-hhhhHHHHHHHHHHHHhCCHH
Confidence            589999999999  9999999999999999999988764 579999999999999999985

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=6.6e-15  Score=142.20  Aligned_cols=59  Identities=34%  Similarity=0.527  Sum_probs=54.7

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..|||+||||++++  +.+|||+|||+||++||||++++   +.|+++|++|++||++|+||.+
T Consensus         3 ~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~---~~~~~~f~~i~~Ay~~L~d~~k   61 (371)
T PRK14287          3 KRDYYEVLGVDRNA--SVDEVKKAYRKLARKYHPDVNKA---PDAEDKFKEVKEAYDTLSDPQK   61 (371)
T ss_pred             CCCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCcHhH
Confidence            36999999999999  99999999999999999999874   3689999999999999999974

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=9.6e-15  Score=140.80  Aligned_cols=59  Identities=37%  Similarity=0.559  Sum_probs=55.1

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .+||+||||++++  +.+|||+|||+||++||||+++++  +.|+++|++|++||++|+||.+
T Consensus         3 ~d~y~iLgv~~~a--~~~eIk~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~k   61 (365)
T PRK14285          3 RDYYEILGLSKGA--SKDEIKKAYRKIAIKYHPDKNKGN--KEAESIFKEATEAYEVLIDDNK   61 (365)
T ss_pred             CCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHcCcch
Confidence            5999999999999  999999999999999999999864  4689999999999999999874

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=8.6e-15  Score=141.52  Aligned_cols=59  Identities=32%  Similarity=0.433  Sum_probs=55.0

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..|||+||||++++  +.+|||+|||+||++||||++++   +.|+++|++|++||++|+||.+
T Consensus         4 ~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~~Lsd~~k   62 (378)
T PRK14283          4 KRDYYEVLGVDRNA--DKKEIKKAYRKLARKYHPDVSEE---EGAEEKFKEISEAYAVLSDDEK   62 (378)
T ss_pred             cCChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhchhHH
Confidence            46999999999999  99999999999999999999875   3699999999999999999864

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=1.1e-14  Score=140.99  Aligned_cols=60  Identities=42%  Similarity=0.602  Sum_probs=55.5

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..|||+||||++++  +.++||+|||+||++||||++++.  +.|+++|++|++||++|+||.+
T Consensus         3 ~~d~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~   62 (380)
T PRK14297          3 SKDYYEVLGLEKGA--SDDEIKKAFRKLAIKYHPDKNKGN--KEAEEKFKEINEAYQVLSDPQK   62 (380)
T ss_pred             CCChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcCHhh
Confidence            36999999999999  999999999999999999999864  4699999999999999999964

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=9.2e-15  Score=141.52  Aligned_cols=59  Identities=31%  Similarity=0.477  Sum_probs=54.8

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..|||+||||++++  +.+|||+|||+||++||||++++.   .|+++|++|++||++|+||.+
T Consensus         3 ~~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~~---~a~~~f~~i~~Ay~vL~d~~k   61 (380)
T PRK14276          3 NTEYYDRLGVSKDA--SQDEIKKAYRKLSKKYHPDINKEP---GAEEKYKEVQEAYETLSDPQK   61 (380)
T ss_pred             CCCHHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc---CHHHHHHHHHHHHHHhcCHhh
Confidence            36999999999999  999999999999999999999853   589999999999999999874

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.1e-14  Score=141.29  Aligned_cols=59  Identities=34%  Similarity=0.490  Sum_probs=55.1

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .|||+||||++++  +.+|||+|||+||++||||++++.  +.|+++|++|++||++|+||.+
T Consensus         5 ~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~k   63 (386)
T PRK14277          5 KDYYEILGVDRNA--TEEEIKKAYRRLAKKYHPDLNPGD--KEAEQKFKEINEAYEILSDPQK   63 (386)
T ss_pred             CCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhCCHHH
Confidence            6999999999999  999999999999999999999864  4689999999999999999864

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.1e-14  Score=141.47  Aligned_cols=59  Identities=34%  Similarity=0.552  Sum_probs=55.0

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .|||+||||++++  +.+|||+|||+||++||||+++++  +.|+++|++|++||++|+||.+
T Consensus         9 ~d~y~~Lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~   67 (389)
T PRK14295          9 KDYYKVLGVPKDA--TEAEIKKAYRKLAREYHPDANKGD--AKAEERFKEISEAYDVLSDEKK   67 (389)
T ss_pred             cCHHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc--hhHHHHHHHHHHHHHHHCchhh
Confidence            5999999999999  999999999999999999998764  4689999999999999999964

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.2e-14  Score=139.94  Aligned_cols=61  Identities=31%  Similarity=0.505  Sum_probs=55.8

Q ss_pred             CccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          222 GSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       222 ~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ...|||+||||++++  +.+|||+|||+||++||||+++++  ++|+++|++|++||++|+||.+
T Consensus         2 ~~~d~y~~lgv~~~a--~~~eik~ayr~la~~~HPD~~~~~--~~~~~~f~~~~~Ay~vL~d~~~   62 (366)
T PRK14294          2 VKRDYYEILGVTRDA--SEEEIKKSYRKLAMKYHPDRNPGD--KEAEELFKEAAEAYEVLSDPKK   62 (366)
T ss_pred             CCCChHHHhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc--hHHHHHHHHHHHHHHHhccHHH
Confidence            346999999999999  999999999999999999999864  4689999999999999999863

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.2e-14  Score=136.21  Aligned_cols=59  Identities=37%  Similarity=0.521  Sum_probs=54.5

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..|||+||||++++  +.+|||+|||+||++||||++++   +.|+++|++|++||++|+||.+
T Consensus         3 ~~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~k   61 (291)
T PRK14299          3 YKDYYAILGVPKNA--SQDEIKKAFKKLARKYHPDVNKS---PGAEEKFKEINEAYTVLSDPEK   61 (291)
T ss_pred             CCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhcCHHH
Confidence            36999999999999  99999999999999999999874   3689999999999999999863

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.52  E-value=1.5e-14  Score=139.92  Aligned_cols=59  Identities=34%  Similarity=0.536  Sum_probs=55.1

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .|||+||||++++  +.++||+|||+||++||||+++++  +.|+++|++|++||++|+||.+
T Consensus         4 ~~~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~k   62 (373)
T PRK14301          4 RDYYEVLGVSRDA--SEDEIKKAYRKLALQYHPDRNPDN--PEAEQKFKEAAEAYEVLRDAEK   62 (373)
T ss_pred             CChHHhcCCCCCC--CHHHHHHHHHHHHHHhCCCcCCCC--hHHHHHHHHHHHHHHHhcchhh
Confidence            6999999999999  999999999999999999999864  4689999999999999999974

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=1.2e-14  Score=143.35  Aligned_cols=61  Identities=28%  Similarity=0.460  Sum_probs=57.4

Q ss_pred             CccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          222 GSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       222 ~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..+.||+||||..++  ++.+||++||+|||+|||||+++. .++|+++|+.|+.||+||+||.
T Consensus         6 ~~~c~YE~L~v~~~a--~d~eik~~YRklALq~HPDknpd~-ieeat~~F~~i~aAYeVLSdp~   66 (508)
T KOG0717|consen    6 KKRCYYEVLGVERDA--DDDEIKKNYRKLALQYHPDKNPDR-IEEATQQFQLIQAAYEVLSDPQ   66 (508)
T ss_pred             hhhHHHHHhcccccC--CHHHHHHHHHHHHHhhCCCCCCcc-HHHHHHHHHHHHHHHHHhcChH
Confidence            347899999999999  999999999999999999998875 6899999999999999999995

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.51  E-value=1.1e-14  Score=143.24  Aligned_cols=55  Identities=33%  Similarity=0.430  Sum_probs=51.5

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .+||+||||+++|  +.+|||+|||+||++||||++++      +++|++|++||++|+||.|
T Consensus        28 ~d~Y~vLGV~~~A--s~~eIKkAYrkla~k~HPDk~~~------~e~F~~i~~AYevLsD~~k   82 (421)
T PTZ00037         28 EKLYEVLNLSKDC--TTSEIKKAYRKLAIKHHPDKGGD------PEKFKEISRAYEVLSDPEK   82 (421)
T ss_pred             hhHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCch------HHHHHHHHHHHHHhccHHH
Confidence            6999999999999  99999999999999999999863      4899999999999999874

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=1.5e-14  Score=139.82  Aligned_cols=59  Identities=32%  Similarity=0.479  Sum_probs=54.8

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..+||+||||++++  +.++||+|||+||++||||++++.   .|+++|++|++||++|+||.+
T Consensus         3 ~~~~y~iLgv~~~a--~~~eik~ayr~la~~~HpD~~~~~---~a~~~f~~i~~Ay~vL~d~~k   61 (376)
T PRK14280          3 KRDYYEVLGVSKSA--SKDEIKKAYRKLSKKYHPDINKEE---GADEKFKEISEAYEVLSDDQK   61 (376)
T ss_pred             CCChHHhhCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHhccHhH
Confidence            36999999999999  999999999999999999998753   589999999999999999974

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=1.7e-14  Score=139.73  Aligned_cols=58  Identities=29%  Similarity=0.374  Sum_probs=54.3

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .|||+||||++++  +.++||+|||+||++||||++++   +.|+++|++|++||++|+||.+
T Consensus         3 ~d~y~iLgv~~~a--~~~eik~ayr~la~~~hpD~~~~---~~a~~~f~~i~~Ay~vL~d~~~   60 (378)
T PRK14278          3 RDYYGLLGVSRNA--SDAEIKRAYRKLARELHPDVNPD---EEAQEKFKEISVAYEVLSDPEK   60 (378)
T ss_pred             CCcceecCCCCCC--CHHHHHHHHHHHHHHHCCCCCCc---HHHHHHHHHHHHHHHHhchhhh
Confidence            5899999999999  99999999999999999999984   4689999999999999999864

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.51  E-value=2.1e-14  Score=138.37  Aligned_cols=60  Identities=35%  Similarity=0.567  Sum_probs=55.2

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..|||+||||++++  +.++||+|||+||++||||++++.  +.|+++|++|++||++|+||.+
T Consensus         3 ~~d~y~iLgv~~~a--s~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~   62 (371)
T PRK10767          3 KRDYYEVLGVSRNA--SEDEIKKAYRKLAMKYHPDRNPGD--KEAEEKFKEIKEAYEVLSDPQK   62 (371)
T ss_pred             CCChHHhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc--HHHHHHHHHHHHHHHHhcchhh
Confidence            36999999999999  999999999999999999999864  4689999999999999999864

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.50  E-value=1.8e-14  Score=139.54  Aligned_cols=58  Identities=41%  Similarity=0.591  Sum_probs=54.2

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .|||+||||++++  +.+|||+|||+||++||||++++   +.|+++|++|++||++|+||.+
T Consensus         5 ~d~y~iLgv~~~a--~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~k   62 (377)
T PRK14298          5 RDYYEILGLSKDA--SVEDIKKAYRKLAMKYHPDKNKE---PDAEEKFKEISEAYAVLSDAEK   62 (377)
T ss_pred             CCHHHhhCCCCCC--CHHHHHHHHHHHHHHhCccccCC---hhHHHHHHHHHHHHHHhcchHh
Confidence            5999999999999  99999999999999999999875   3689999999999999999974

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.49  E-value=3e-14  Score=138.72  Aligned_cols=59  Identities=37%  Similarity=0.535  Sum_probs=54.9

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .|||+||||++++  +.++||+|||+||++||||++++.  ..|+++|++|++||++|+||.+
T Consensus         3 ~d~y~iLgv~~~a--~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~   61 (397)
T PRK14281          3 RDYYEVLGVSRSA--DKDEIKKAYRKLALKYHPDKNPDN--KEAEEHFKEVNEAYEVLSNDDK   61 (397)
T ss_pred             CChhhhcCCCCCC--CHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhhhhhh
Confidence            5999999999999  999999999999999999999864  4689999999999999999864

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.49  E-value=2.7e-14  Score=138.42  Aligned_cols=58  Identities=34%  Similarity=0.491  Sum_probs=54.3

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .|||+||||++++  +.++||+|||+||++||||++++.   .|+++|++|++||++|+||.+
T Consensus         3 ~d~Y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~~---~~~~~f~~i~~Ay~vLsd~~k   60 (382)
T PRK14291          3 KDYYEILGVSRNA--TQEEIKKAYRRLARKYHPDFNKNP---EAEEKFKEINEAYQVLSDPEK   60 (382)
T ss_pred             CCHHHhhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc---cHHHHHHHHHHHHHHhcCHHH
Confidence            5999999999999  999999999999999999999863   689999999999999999864

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.47  E-value=5.2e-14  Score=135.56  Aligned_cols=60  Identities=43%  Similarity=0.637  Sum_probs=55.4

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .|||+||||++++  +.+|||+|||+||++||||++++. .+.|+++|++|++||++|+||.+
T Consensus         3 ~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~~L~d~~~   62 (365)
T PRK14290          3 KDYYKILGVDRNA--SQEDIKKAFRELAKKWHPDLHPGN-KAEAEEKFKEISEAYEVLSDPQK   62 (365)
T ss_pred             CChhhhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc-hhHHHHHHHHHHHHHHHhcChhh
Confidence            5999999999999  999999999999999999998864 34799999999999999999864

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=4.3e-14  Score=133.66  Aligned_cols=59  Identities=32%  Similarity=0.540  Sum_probs=55.9

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..|||.||||.+++  +..+|++|||.+|++||||||+++.  .|.++|+.|.+||+||+|+.
T Consensus         4 ~~dyY~lLgi~~~a--t~~eIkKaYr~kaL~~HPDKNp~dP--~A~ekFq~L~eAy~VL~D~~   62 (296)
T KOG0691|consen    4 DTDYYDLLGISEDA--TDAEIKKAYRKKALQYHPDKNPGDP--QAAEKFQELSEAYEVLSDEE   62 (296)
T ss_pred             cchHHHHhCCCCCC--CHHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHHHHHHHHhcCHH
Confidence            36999999999999  9999999999999999999999985  49999999999999999985

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.46  E-value=5.3e-14  Score=132.50  Aligned_cols=59  Identities=31%  Similarity=0.478  Sum_probs=54.5

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..|||+||||++++  +.++||+|||+||++||||++++.   .|+++|++|++||++|+||.+
T Consensus         3 ~~d~y~~Lgv~~~a--~~~eik~ayr~la~k~HPD~~~~~---~~~~~f~~i~~Ay~~L~~~~k   61 (306)
T PRK10266          3 LKDYYAIMGVKPTD--DLKTIKTAYRRLARKYHPDVSKEP---DAEARFKEVAEAWEVLSDEQR   61 (306)
T ss_pred             cCChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHhhhHHH
Confidence            46999999999999  999999999999999999998753   689999999999999999864

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=4.7e-14  Score=131.39  Aligned_cols=60  Identities=37%  Similarity=0.541  Sum_probs=56.5

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..+.|.||||++++  +.++||++||+|+++||||+++++  +++.++|++||.||++|+||.+
T Consensus        30 ~~~LYdVLgl~k~a--t~d~IKKaYR~L~~k~HPD~~gd~--P~~~dkf~eIN~Ay~ILsD~~k   89 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTA--TKDEIKKAYRKLALKYHPDKNGDN--PEATDKFKEINTAYAILSDPTK   89 (279)
T ss_pred             hhHHHHHhCCCccc--chHHHHHHHHHHHHHhCCCcCCCC--chhHHHHHHHHHHHHHhcChhh
Confidence            46999999999999  999999999999999999999986  5799999999999999999864

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.46  E-value=7.6e-14  Score=135.23  Aligned_cols=60  Identities=35%  Similarity=0.600  Sum_probs=55.5

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..|||+||||++++  +.+|||+|||+||++||||+++++  +.|+++|++|++||++|+||.+
T Consensus         4 ~~~~y~~Lgv~~~a--~~~eik~ayr~la~~~HpD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~   63 (386)
T PRK14289          4 KRDYYEVLGVSKTA--TVDEIKKAYRKKAIQYHPDKNPGD--KEAEEKFKEAAEAYDVLSDPDK   63 (386)
T ss_pred             cCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCC--hHHHHHHHHHHHHHHHhcCHHH
Confidence            36999999999999  999999999999999999999864  4699999999999999999863

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.42  E-value=1.3e-13  Score=133.15  Aligned_cols=58  Identities=31%  Similarity=0.398  Sum_probs=53.8

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .+||+||||++++  +.+|||+|||+||++||||+++..   .|+++|++|++||++|+||.+
T Consensus         3 ~~~y~iLgv~~~a--s~~eik~ayr~la~~~HPD~~~~~---~~~~~f~~i~~Ay~~L~d~~~   60 (372)
T PRK14300          3 QDYYQILGVSKTA--SQADLKKAYLKLAKQYHPDTTDAK---DAEKKFKEINAAYDVLKDEQK   60 (372)
T ss_pred             CChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc---CHHHHHHHHHHHHHHhhhHhH
Confidence            5999999999999  999999999999999999998743   589999999999999999864

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=1.3e-13  Score=136.34  Aligned_cols=61  Identities=31%  Similarity=0.480  Sum_probs=57.6

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-chHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGS-SQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~-~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .++|.+|+|+++|  +.+||++|||++++.|||||+.++ .|+.|+++|++|..||+||+||.+
T Consensus         9 ~e~Ya~LNlpkdA--t~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~k   70 (546)
T KOG0718|consen    9 IELYALLNLPKDA--TDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQK   70 (546)
T ss_pred             hhHHHHhCCCccc--CHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHH
Confidence            5999999999999  999999999999999999999854 589999999999999999999974

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=1.6e-13  Score=129.15  Aligned_cols=59  Identities=32%  Similarity=0.481  Sum_probs=55.6

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..+||+||||++++  ++.|||+||++||++||||.+.+.   .|+++|++|.+||++|+|++|
T Consensus        42 ~~d~Y~vLgv~~~A--t~~EIK~Af~~LaKkyHPD~n~~~---~a~~kF~eI~~AYEiLsd~eK  100 (288)
T KOG0715|consen   42 KEDYYKVLGVSRNA--TLSEIKSAFRKLAKKYHPDVNKDK---EASKKFKEISEAYEILSDEEK  100 (288)
T ss_pred             CcchhhhhCcCCCC--CHHHHHHHHHHHHHhhCCCCCCCc---chhhHHHHHHHHHHHhcCHHH
Confidence            34999999999999  999999999999999999999986   799999999999999999874

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=2.9e-13  Score=114.61  Aligned_cols=60  Identities=42%  Similarity=0.686  Sum_probs=55.6

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..++|+||||++++  +..+|++|||+++++||||+++++.. .|+++|+.|++||++|+|+.
T Consensus         5 ~~~~y~iLgv~~~a--s~~eik~ayrkla~~~HPD~~~~~~~-~a~~~f~~i~~Ay~vLsd~~   64 (237)
T COG2214           5 LLDYYEILGVPPNA--SLEEIKKAYRKLALKYHPDRNPGDPK-VAEEKFKEINEAYEILSDPE   64 (237)
T ss_pred             hhhHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCchh-HHHHHHHHHHHHHHHhhCHH
Confidence            46999999999999  99999999999999999999998633 59999999999999999985

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.40  E-value=2.9e-13  Score=130.82  Aligned_cols=58  Identities=33%  Similarity=0.483  Sum_probs=54.0

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .|||+||||++++  +.++||+|||+|+++||||+++..   .|+++|++|++||++|+||.+
T Consensus         3 ~d~y~vLgv~~~a--~~~eik~ayr~la~~~HPD~~~~~---~a~~~f~~i~~Ay~vL~~~~~   60 (374)
T PRK14293          3 ADYYEILGVSRDA--DKDELKRAYRRLARKYHPDVNKEP---GAEDRFKEINRAYEVLSDPET   60 (374)
T ss_pred             CChhhhcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc---CHHHHHHHHHHHHHHHhchHH
Confidence            5999999999999  999999999999999999998753   589999999999999999864

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=4.5e-13  Score=123.02  Aligned_cols=63  Identities=25%  Similarity=0.406  Sum_probs=58.4

Q ss_pred             CCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          221 VGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       221 ~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ....+.|+||||.+++  +..+|++||++|+|.||||+++...+.+|+++|+.|+.||+||+|.+
T Consensus        11 f~~~d~YevLGVer~a--~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDee   73 (264)
T KOG0719|consen   11 FNKKDLYEVLGVERDA--TDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEE   73 (264)
T ss_pred             ccccCHHHHhhhcccC--CHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            3456999999999999  99999999999999999999987668899999999999999999875

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.34  E-value=1.2e-12  Score=138.57  Aligned_cols=61  Identities=21%  Similarity=0.263  Sum_probs=56.0

Q ss_pred             CCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          221 VGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       221 ~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      +...+||+||||+++|  +..+||+|||+||++||||+++++   .|.++|+.|++||++|+||.+
T Consensus       570 ~~d~dYYdILGVs~dA--S~~EIKKAYRKLAlkyHPDKN~~~---~A~ekFq~I~EAYeVLSDp~k  630 (1136)
T PTZ00341        570 IPDTLFYDILGVGVNA--DMKEISERYFKLAENYYPPKRSGN---EGFHKFKKINEAYQILGDIDK  630 (1136)
T ss_pred             CCCCChHHHcCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHhCCHHH
Confidence            3457999999999999  999999999999999999999874   588899999999999999863

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.32  E-value=2.7e-12  Score=112.57  Aligned_cols=63  Identities=22%  Similarity=0.334  Sum_probs=55.3

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc---hHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS---QAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~---k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .+||+||||++...++..+|+++||++++++|||+..+..   +..|.+.|..|++||++|+||.+
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~   66 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLK   66 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhH
Confidence            3899999999987669999999999999999999976543   44578899999999999999963

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=2.1e-12  Score=117.38  Aligned_cols=58  Identities=33%  Similarity=0.509  Sum_probs=54.1

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      -|+|+||||++++  +++|||+|||+|.+++||||++..  ++.++.|..|.+||+.|+|++
T Consensus        99 fDPyEILGl~pga--s~~eIKkaYR~LSik~HPDK~~~~--~~~e~~~~~I~KAY~aLTD~~  156 (230)
T KOG0721|consen   99 FDPYEILGLDPGA--SEKEIKKAYRRLSIKYHPDKQPPE--EGDEEFFEAIAKAYQALTDKK  156 (230)
T ss_pred             CCcHHhhCCCCCC--CHHHHHHHHHHhhhhhCCCcCCCc--chhHHHHHHHHHHHHHhcchh
Confidence            5999999999999  999999999999999999998874  468999999999999999975

>PHA03102 Small T antigen; Reviewed

Probab=99.31  E-value=1.4e-12  Score=113.09  Aligned_cols=57  Identities=33%  Similarity=0.423  Sum_probs=51.9

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ...+|+||||++++..+.++||+|||++|+++|||++++      +++|++|++||++|+|+.
T Consensus         4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~------~e~~k~in~Ay~~L~d~~   60 (153)
T PHA03102          4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD------EEKMKELNTLYKKFRESV   60 (153)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch------hHHHHHHHHHHHHHhhHH
Confidence            357899999999988899999999999999999999653      579999999999999875

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.30  E-value=5.1e-12  Score=111.31  Aligned_cols=65  Identities=28%  Similarity=0.388  Sum_probs=58.1

Q ss_pred             CccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc---hHHHHHHHHHHHHHHHHhhcccC
Q 023167          222 GSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS---QAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       222 ~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~---k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      +..+||++|||++...++..+|+++||+|++++|||++.+..   +..+.+.+..||+||++|+||.+
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~   69 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPR   69 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhh
Confidence            457999999999998889999999999999999999987643   45688899999999999999963

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.26  E-value=6.2e-12  Score=109.91  Aligned_cols=62  Identities=26%  Similarity=0.304  Sum_probs=54.3

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc-hHHHHHHHHHHHHHHHHhhccc
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS-QAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~-k~~AeekFk~I~eAYevLsDp~  285 (286)
                      .+||+||||++...++..+|+++||++++++|||+..... +..+.+.+..|++||++|+||.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~   64 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDAL   64 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            5899999999987679999999999999999999987532 4456678899999999999996

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.25  E-value=1.4e-11  Score=108.77  Aligned_cols=63  Identities=22%  Similarity=0.347  Sum_probs=55.1

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc---hHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS---QAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~---k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .+||+||||++...++..+|+++||+|++++|||+++...   +..+.+.+..||+||++|+||.+
T Consensus         6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~   71 (176)
T PRK03578          6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLK   71 (176)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhh
Confidence            6999999999987679999999999999999999987543   34567778999999999999963

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.24  E-value=8.4e-12  Score=116.24  Aligned_cols=62  Identities=26%  Similarity=0.307  Sum_probs=54.2

Q ss_pred             CCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----CchHHHHHHHHHHHHHHHHhhcc
Q 023167          221 VGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQG-----SSQAMAEEKFKLCLNAYKSLCAA  284 (286)
Q Consensus       221 ~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~-----~~k~~AeekFk~I~eAYevLsDp  284 (286)
                      +...++|+||||++++  +.++||+|||+|+++||||+..+     ..++.|+++|++|++||++|+..
T Consensus       197 ~~~~~ay~vLgv~~~a--s~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        197 PTLEDAYKVLGVSESD--DDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             CcHHhHHHHcCCCCCC--CHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            3447999999999999  99999999999999999999643     12467999999999999999853

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.24  E-value=1.2e-11  Score=103.01  Aligned_cols=55  Identities=20%  Similarity=0.258  Sum_probs=48.8

Q ss_pred             CCCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhh
Q 023167          220 TVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC  282 (286)
Q Consensus       220 ~~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLs  282 (286)
                      .+...++|+||||++++  +.++|+++||+|++++|||+.+      ..+.|++|++||++|.
T Consensus        61 ~Ms~~eAy~ILGv~~~A--s~~eIkkaYRrLa~~~HPDkgG------s~~~~~kIneAyevL~  115 (116)
T PTZ00100         61 PMSKSEAYKILNISPTA--SKERIREAHKQLMLRNHPDNGG------STYIASKVNEAKDLLL  115 (116)
T ss_pred             CCCHHHHHHHcCCCCCC--CHHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHHh
Confidence            34457999999999999  9999999999999999999853      2578999999999995

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.11  E-value=4.3e-11  Score=116.06  Aligned_cols=66  Identities=29%  Similarity=0.402  Sum_probs=61.1

Q ss_pred             cCCCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc-hHHHHHHHHHHHHHHHHhhcccC
Q 023167          219 CTVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS-QAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       219 ~~~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~-k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .+.+.+|||+||||.+++  +..||.+|||++|++||||-.++.. +..|+.+|..|..|-+||+||++
T Consensus       389 kqs~kRDYYKILGVkRnA--sKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~Ek  455 (504)
T KOG0624|consen  389 KQSGKRDYYKILGVKRNA--SKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEK  455 (504)
T ss_pred             HHhccchHHHHhhhcccc--cHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHH
Confidence            357789999999999999  9999999999999999999988764 78899999999999999999974

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=7.4e-11  Score=104.98  Aligned_cols=60  Identities=38%  Similarity=0.574  Sum_probs=55.6

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .++|.||||.+.+  +.++|++||+.+|++||||+++.. +..|+.+|++|.+||++|+|+.+
T Consensus         3 ~d~~~~l~i~~~a--s~~~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~ea~~~ls~~~k   62 (306)
T KOG0714|consen    3 KDYYKILGIARSA--SEEDIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIAEAYEVLSDPKK   62 (306)
T ss_pred             ccHHHHhCccccc--cHHHHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhhccccccCCHHH
Confidence            5899999999999  888999999999999999998887 77788899999999999999864

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1e-10  Score=115.71  Aligned_cols=65  Identities=28%  Similarity=0.344  Sum_probs=58.1

Q ss_pred             cccCCCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          217 EQCTVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       217 ~~~~~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      +.......|+|.+|||+.++  ++++||+.||++|+..|||||..   +.|+|.|+.|+.||++|+|+++
T Consensus       228 l~re~~~~daYsvlGl~~d~--sd~~lKk~Yrk~A~LVhPDKn~~---~~A~Eafk~Lq~Afevig~~~k  292 (490)
T KOG0720|consen  228 LSRELNILDAYSALGLPSDC--SDADLKKNYRKKAMLVHPDKNMI---PRAEEAFKKLQVAFEVIGDSVK  292 (490)
T ss_pred             hhhhhcCCCchhhcCCCCCC--CHHHHHHHHHhhceEeCCCccCC---hhHHHHHHHHHHHHHHhcchhh
Confidence            33334468999999999999  99999999999999999999985   4799999999999999999864

>PHA02624 large T antigen; Provisional

Probab=98.98  E-value=3.2e-10  Score=116.28  Aligned_cols=57  Identities=32%  Similarity=0.385  Sum_probs=52.1

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..++|+||||++++..+.++||+|||++|++||||+++      ++++|++|++||++|+|+.
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG------deekfk~Ln~AYevL~d~~   66 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG------DEEKMKRLNSLYKKLQEGV   66 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC------cHHHHHHHHHHHHHHhcHH
Confidence            46899999999998889999999999999999999964      3689999999999999875

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=3.2e-10  Score=111.53  Aligned_cols=63  Identities=38%  Similarity=0.490  Sum_probs=58.6

Q ss_pred             CCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          221 VGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       221 ~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ....++|.||||...+  +..+||+|||++++.||||++.++ +.+++.+|++|.+||.+|+||.+
T Consensus       370 SkRkd~ykilGi~~~a--s~~eikkayrk~AL~~Hpd~~ags-q~eaE~kFkevgeAy~il~d~~k  432 (486)
T KOG0550|consen  370 SKRKDWYKILGISRNA--SDDEIKKAYRKLALVHHPDKNAGS-QKEAEAKFKEVGEAYTILSDPMK  432 (486)
T ss_pred             hhhhhHHHHhhhhhhc--ccchhhhHHHHHHHHhCCCcCcch-hHHHHHHHHHHHHHHHHhcCHHH
Confidence            3457999999999999  999999999999999999999987 78999999999999999999864

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.89  E-value=2.8e-09  Score=94.00  Aligned_cols=62  Identities=21%  Similarity=0.203  Sum_probs=56.6

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc---hHHHHHHHHHHHHHHHHhhccc
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS---QAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~---k~~AeekFk~I~eAYevLsDp~  285 (286)
                      .|||++|||++...++...|++.|+.|.+.+|||+....+   +..|.+.-..||+||++|+||.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl   66 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPI   66 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChH
Confidence            5899999999998889999999999999999999986654   5678889999999999999996

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=9.6e-10  Score=102.70  Aligned_cols=61  Identities=21%  Similarity=0.361  Sum_probs=55.9

Q ss_pred             CCCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          220 TVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       220 ~~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      +.+.+|.|+||||.+++  +..+|.+|||+||+++|||++++.   ++.+.|+.|..||++|.|.+
T Consensus        29 YCG~enCYdVLgV~Rea--~KseIakAYRqLARrhHPDr~r~~---e~k~~F~~iAtayeilkd~e   89 (329)
T KOG0722|consen   29 YCGAENCYDVLGVAREA--NKSEIAKAYRQLARRHHPDRNRDP---ESKKLFVKIATAYEILKDNE   89 (329)
T ss_pred             cccchhHHHHhhhhhhc--cHHHHHHHHHHHHHHhCCcccCCc---hhhhhhhhhhcccccccchh
Confidence            56778999999999999  999999999999999999999986   46689999999999999864

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.80  E-value=3.3e-09  Score=105.29  Aligned_cols=60  Identities=30%  Similarity=0.442  Sum_probs=55.8

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---CchHHHHHHHHHHHHHHHHhhccc
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQG---SSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~---~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      -|+|+||||..++  +..+||++||+|.+++||||.+.   ..+.+.++++++|++||..|+|..
T Consensus        98 fDPyEILGI~~~t--s~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k  160 (610)
T COG5407          98 FDPYEILGIDQDT--SERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK  160 (610)
T ss_pred             CChHHhhcccCCC--cHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHH
Confidence            3899999999999  99999999999999999999876   458899999999999999999863

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=2.6e-08  Score=96.06  Aligned_cols=36  Identities=39%  Similarity=0.697  Sum_probs=34.9

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQG  261 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~  261 (286)
                      ..+|.||||+++|  +++|||+|||+||++||||||++
T Consensus         4 ~~~y~il~v~~~A--s~~eikkayrkla~k~HpDkn~~   39 (337)
T KOG0712|consen    4 TKLYDILGVSPDA--SEEEIKKAYRKLALKYHPDKNPD   39 (337)
T ss_pred             cccceeeccCCCc--CHHHHHHHHHHHHHHhCCCCCcc
Confidence            5899999999999  99999999999999999999997

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=4.5e-08  Score=88.89  Aligned_cols=60  Identities=25%  Similarity=0.379  Sum_probs=55.7

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      .-++|+||.|.|+.  +.++||+.||+|++..|||||+++ .+-|...|--|..||..|-|+.
T Consensus        52 nLNpfeVLqIdpev--~~edikkryRklSilVHPDKN~Dd-~~rAqkAFdivkKA~k~l~n~~  111 (250)
T KOG1150|consen   52 NLNPFEVLQIDPEV--TDEDIKKRYRKLSILVHPDKNPDD-AERAQKAFDIVKKAYKLLENDK  111 (250)
T ss_pred             ccChHHHHhcCCCC--CHHHHHHHHHhhheeecCCCCccc-HHHHHHHHHHHHHHHHHHhCHH
Confidence            36899999999999  999999999999999999999987 5789999999999999998764

>PRK14284 chaperone protein DnaJ; Provisional

Probab=98.58  E-value=6.6e-08  Score=94.33  Aligned_cols=36  Identities=39%  Similarity=0.704  Sum_probs=34.5

Q ss_pred             ccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC
Q 023167          225 SDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGS  262 (286)
Q Consensus       225 d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~  262 (286)
                      |||+||||++++  +.++||+|||+||++||||++++.
T Consensus         2 d~y~iLgv~~~a--~~~eikkayr~la~~~HPD~~~~~   37 (391)
T PRK14284          2 DYYTILGVSKTA--SPEEIKKAYRKLAVKYHPDKNPGD   37 (391)
T ss_pred             CHHHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc
Confidence            899999999999  999999999999999999999864

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=98.49  E-value=2.1e-07  Score=89.38  Aligned_cols=35  Identities=31%  Similarity=0.593  Sum_probs=33.4

Q ss_pred             ccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 023167          225 SDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQG  261 (286)
Q Consensus       225 d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~  261 (286)
                      |||+||||++++  +.++||+|||+||++||||+++.
T Consensus         1 d~y~~Lgv~~~a--~~~~ik~ayr~la~~~HPD~~~~   35 (354)
T TIGR02349         1 DYYEILGVSKDA--SEEEIKKAYRKLAKKYHPDRNKD   35 (354)
T ss_pred             ChHHhCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC
Confidence            699999999999  99999999999999999999973

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14292 chaperone protein DnaJ; Provisional

Probab=98.45  E-value=2.7e-07  Score=89.26  Aligned_cols=36  Identities=33%  Similarity=0.641  Sum_probs=34.4

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQG  261 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~  261 (286)
                      .|||+||||++++  +.++||+|||+|+++||||+++.
T Consensus         2 ~d~y~~Lgv~~~a--~~~~ik~ayr~l~~~~hpD~~~~   37 (371)
T PRK14292          2 MDYYELLGVSRTA--SADEIKSAYRKLALKYHPDRNKE   37 (371)
T ss_pred             CChHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC
Confidence            5899999999999  99999999999999999999975

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.1e-06  Score=83.12  Aligned_cols=66  Identities=23%  Similarity=0.240  Sum_probs=54.5

Q ss_pred             CCCccccccccCcCCCCC-CCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          220 TVGSSSDRTILGLPPSGP-LKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       220 ~~~~~d~Y~VLGL~~~a~-~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      .+...|+|.+|||+.... ++..+|.+|.++.+.+||||+........+.+.|+.|+.||++|+|+.
T Consensus        39 ~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~  105 (379)
T COG5269          39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRK  105 (379)
T ss_pred             hhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHH
Confidence            466689999999998643 588899999999999999999632222357889999999999999975

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=1.9e-06  Score=92.69  Aligned_cols=58  Identities=28%  Similarity=0.401  Sum_probs=49.4

Q ss_pred             CCCccccccccCcCCCCC-C-CHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhh
Q 023167          220 TVGSSSDRTILGLPPSGP-L-KLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC  282 (286)
Q Consensus       220 ~~~~~d~Y~VLGL~~~a~-~-t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLs  282 (286)
                      .+...++|+||.|+-+.. . ..+.||++|++||.+|||||||+     ..++|..+++||+.|+
T Consensus      1277 ~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE-----GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1277 TMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE-----GREMFERVNKAYELLS 1336 (2235)
T ss_pred             ccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch-----HHHHHHHHHHHHHHHH
Confidence            345568999999987533 2 34899999999999999999996     4899999999999998

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=98.04  E-value=7.6e-06  Score=86.13  Aligned_cols=36  Identities=31%  Similarity=0.571  Sum_probs=34.5

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQG  261 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~  261 (286)
                      .+||+||||++++  +.++||+|||+|+++||||++++
T Consensus         2 ~DYYeVLGVs~dA--S~eEIKKAYRKLAKKyHPDKn~~   37 (871)
T TIGR03835         2 RDYYEVLGIDRDA--DEQEIKKAFRKLAKKYHPDRNKA   37 (871)
T ss_pred             CChhHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC
Confidence            5899999999999  99999999999999999999876

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=5.2e-05  Score=70.72  Aligned_cols=55  Identities=25%  Similarity=0.326  Sum_probs=49.3

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHH-Hhhc
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYK-SLCA  283 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYe-vLsD  283 (286)
                      ..+|.||||..++  +.++|+.||..|++++|||...+.   +..+.|..|.+||. ||..
T Consensus        47 ~e~fril~v~e~~--~adevr~af~~lakq~hpdsgs~~---adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   47 MECFRILGVEEGA--DADEVREAFHDLAKQVHPDSGSEE---ADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHhcccccC--chhHHHHHHHHHHHHcCCCCCCcc---ccHHHHHHHHHHHHHHHHH
Confidence            5799999999999  999999999999999999987763   56789999999998 7754

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.00011  Score=60.88  Aligned_cols=55  Identities=27%  Similarity=0.256  Sum_probs=47.3

Q ss_pred             CCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhc
Q 023167          221 VGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCA  283 (286)
Q Consensus       221 ~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsD  283 (286)
                      |....+-.||||.+..  +.+.||.|+|++.+.-|||+.+.+      -.-.+||+|+++|..
T Consensus        53 Msr~EA~lIL~v~~s~--~k~KikeaHrriM~~NHPD~GGSP------YlAsKINEAKdlLe~  107 (112)
T KOG0723|consen   53 MSRREAALILGVTPSL--DKDKIKEAHRRIMLANHPDRGGSP------YLASKINEAKDLLEG  107 (112)
T ss_pred             cchHHHHHHhCCCccc--cHHHHHHHHHHHHHcCCCcCCCCH------HHHHHHHHHHHHHhc
Confidence            4446788999999999  999999999999999999998865      334589999999864

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0013  Score=57.96  Aligned_cols=65  Identities=26%  Similarity=0.235  Sum_probs=54.6

Q ss_pred             CccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc---hHHHHHHHHHHHHHHHHhhcccC
Q 023167          222 GSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS---QAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       222 ~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~---k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ...+||.++|.....++..+-++.-|--...+.|||+.+...   ...|.+.-.+|++||.+|.||++
T Consensus         6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~   73 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLA   73 (168)
T ss_pred             hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHH
Confidence            346899999999988888888888999999999999944321   33788999999999999999963

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.00091  Score=58.67  Aligned_cols=56  Identities=25%  Similarity=0.379  Sum_probs=49.5

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc-----hHHHHHHHHHHHHHHHHh
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS-----QAMAEEKFKLCLNAYKSL  281 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~-----k~~AeekFk~I~eAYevL  281 (286)
                      .+.|.+||+....  ...+|+++||++....|||+..+..     .+.+.+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~--~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKA--DQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhh--hHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            6899999999999  9999999999999999999843321     567999999999999875

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=96.36  E-value=0.0046  Score=62.22  Aligned_cols=44  Identities=32%  Similarity=0.453  Sum_probs=34.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCc-----hHHHHHHHHHHHHHHHHh
Q 023167          238 LKLDDVKNAFRLSALKWHPDKHQGSS-----QAMAEEKFKLCLNAYKSL  281 (286)
Q Consensus       238 ~t~~eIKkAYRkLalk~HPDK~~~~~-----k~~AeekFk~I~eAYevL  281 (286)
                      ++.++||++||+-+|..||||.++..     |=+|++.|-.|.+|++.-
T Consensus       400 Vtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f  448 (453)
T KOG0431|consen  400 VTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF  448 (453)
T ss_pred             cCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence            48999999999999999999977541     445677777777777643

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=95.86  E-value=0.0041  Score=54.57  Aligned_cols=61  Identities=28%  Similarity=0.378  Sum_probs=50.8

Q ss_pred             ccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc---hHHHHHHHHHHHHHHHHhhccc
Q 023167          225 SDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS---QAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       225 d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~---k~~AeekFk~I~eAYevLsDp~  285 (286)
                      +++.++|+++......+.++..|+.+.+.+|||+.....   +..+-+.+..++.||.+|.||+
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l   65 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPL   65 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHH
Confidence            456677888877778889999999999999999977543   4446789999999999999985

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=90.67  E-value=0.36  Score=41.07  Aligned_cols=55  Identities=13%  Similarity=0.074  Sum_probs=37.2

Q ss_pred             CCCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhh
Q 023167          220 TVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC  282 (286)
Q Consensus       220 ~~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLs  282 (286)
                      .|....+..||||++..  +.++|.+.|..|-..-+|++++.      .-.=..|..|.+.|.
T Consensus        54 ~Mtl~EA~~ILnv~~~~--~~eeI~k~y~~Lf~~Nd~~kGGS------fYLQSKV~rAKErl~  108 (127)
T PF03656_consen   54 GMTLDEARQILNVKEEL--SREEIQKRYKHLFKANDPSKGGS------FYLQSKVFRAKERLE  108 (127)
T ss_dssp             ---HHHHHHHHT--G----SHHHHHHHHHHHHHHT-CCCTS-------HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCCCcc--CHHHHHHHHHHHHhccCCCcCCC------HHHHHHHHHHHHHHH
Confidence            46778999999999977  99999999999999999997764      223345666666664

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>PF13446 RPT: A repeated domain in UCH-protein

Probab=85.73  E-value=1.6  Score=31.89  Aligned_cols=30  Identities=20%  Similarity=0.214  Sum_probs=26.5

Q ss_pred             CCccccccccCcCCCCCCCHHHHHHHHHHHHH
Q 023167          221 VGSSSDRTILGLPPSGPLKLDDVKNAFRLSAL  252 (286)
Q Consensus       221 ~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLal  252 (286)
                      ++...+|++|||+++.  +.+.|-.+|+....
T Consensus         2 ~~~~~Ay~~Lgi~~~~--~Dd~Ii~~f~~~~~   31 (62)
T PF13446_consen    2 MDVEEAYEILGIDEDT--DDDFIISAFQSKVN   31 (62)
T ss_pred             CCHHHHHHHhCcCCCC--CHHHHHHHHHHHHH
Confidence            4456899999999998  99999999998877

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=85.36  E-value=0.69  Score=40.24  Aligned_cols=23  Identities=26%  Similarity=0.200  Sum_probs=20.2

Q ss_pred             hHHHHHHHHHHHHHHHHhhcccC
Q 023167          264 QAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       264 k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      +..+.+.+..||+||++|+||.+
T Consensus        32 ~~~a~~~s~~iN~AY~~L~~p~~   54 (157)
T TIGR00714        32 QLAAVQQSTTLNQAYQTLKDPLM   54 (157)
T ss_pred             hHHHHHHHHHHHHHHHHhCChhh
Confidence            45688999999999999999963

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=80.96  E-value=4.1  Score=33.83  Aligned_cols=47  Identities=28%  Similarity=0.303  Sum_probs=38.0

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCC--chHHHHHHHHHHHHHHHHhhcc
Q 023167          238 LKLDDVKNAFRLSALKWHPDKHQGS--SQAMAEEKFKLCLNAYKSLCAA  284 (286)
Q Consensus       238 ~t~~eIKkAYRkLalk~HPDK~~~~--~k~~AeekFk~I~eAYevLsDp  284 (286)
                      ++..+++.|.|..-++.|||..+..  .++.-++-++.|+.-.+.|..+
T Consensus         6 ~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~   54 (112)
T PF14687_consen    6 LSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR   54 (112)
T ss_pred             hhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence            3678899999999999999975543  3667788899999888887753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	286
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		2e-04
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		5e-04

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 282
           IL +P S     DD+K A+R  AL+WHPDK+   ++  AE+KFK    AY+ L 
Sbjct: 7   ILDVPRSA--SADDIKKAYRRKALQWHPDKNP-DNKEFAEKKFKEVAEAYEVLS 57

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +LG+  S     +D+K A+R  AL+WHPDK+  + +  AE+KFKL   AY+ L
Sbjct: 14  VLGVQASA--SPEDIKKAYRKLALRWHPDKNPDNKEE-AEKKFKLVSEAYEVL 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	1e-08
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	1e-08
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	3e-08
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	4e-08
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	4e-08
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	6e-08
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	1e-07
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	1e-07
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	2e-07
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	2e-07
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	3e-07
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	6e-07
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	6e-07
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	6e-07
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	2e-06
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-06
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-06
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	2e-06
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	3e-06
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	4e-06
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	6e-06
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	1e-05
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	1e-05
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	3e-05
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	8e-05
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-04
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-04
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	3e-04

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           ++       L   + K   R   LKWHPDK+   +  +A E FK   N    L
Sbjct: 21  VVEQAWK--LPESERKKIIRRLYLKWHPDKNPE-NHDIANEVFKHLQNEINRL 70

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQG-SSQAMAEEKFKLCLNAYKSL 281
           +L +      K   +  A+R  A K HPD+ +    + +AEE+F++   AY++L
Sbjct: 20  VLEVNREEFDK-QKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETL 72

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +D+K A+R  AL+WHPDK+  + +  AE+KFKL   AY+ L
Sbjct: 24  EDIKKAYRKLALRWHPDKNPDNKEE-AEKKFKLVSEAYEVL 63

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 48.8 bits (117), Expect = 4e-08
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           + +K A+R  ALKWHPDK+  + +  AE +FK    AY+ L
Sbjct: 24  EAIKKAYRKLALKWHPDKNPENKEE-AERRFKQVAEAYEVL 63

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           DD+K A+R  AL+WHPDK+  + +  AE+KFK    AY+ L
Sbjct: 17  DDIKKAYRRKALQWHPDKNPDNKEF-AEKKFKEVAEAYEVL 56

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 50.2 bits (120), Expect = 6e-08
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAM----AEEKFKLCLNAYKSL 281
           ILG  PS  +   D+K  ++   L +HPDK      A       +KF     A+K L
Sbjct: 15  ILGADPSANI--SDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
            LGL        +++K A+R  AL++HPDK++   +  AEEKFK    AY  L
Sbjct: 8   TLGLARGA--SDEEIKRAYRRQALRYHPDKNK---EPGAEEKFKEIAEAYDVL 55

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +LGL  +     DD+K ++R  ALK+HPDK+  + +  A +KFK   NA+  L
Sbjct: 22  VLGLDKNA--TSDDIKKSYRKLALKYHPDKNPDNPE--AADKFKEINNAHAIL 70

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 7/53 (13%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +LG+ P      +++K A+R  ALK+HPDK+         E+FK    AY+ L
Sbjct: 13  VLGVKPDA--SDNELKKAYRKMALKFHPDKNPD-----GAEQFKQISQAYEVL 58

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +LG+P +       +K A+      +HPD++ GS++  A E+F     AY  L
Sbjct: 22  LLGVPSTA--TQAQIKAAYYRQCFLYHPDRNSGSAE--AAERFTRISQAYVVL 70

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 7/53 (13%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +LG+ PS      ++K  +R +ALK+HPDK  G       EKFK    A++ L
Sbjct: 13  LLGVSPSA--NEQELKKGYRKAALKYHPDKPTG-----DTEKFKEISEAFEIL 58

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAM----AEEKFKLCLNAYKSL 281
           ILG  PS    + D+K  ++   L +HPDK      A       +KF     A+K L
Sbjct: 21  ILGADPSA--NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKIL 75

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 46.3 bits (110), Expect = 6e-07
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 282
           + +   F++ AL+ HPDKH  + +  A E F+    A + L 
Sbjct: 35  EQILAEFKVRALECHPDKHPENPK--AVETFQKLQKAKEILT 74

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 46.1 bits (110), Expect = 6e-07
 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
            +++ A++  A+K+HPD++QG  +  AE KFK    AY+ L
Sbjct: 18  REIRKAYKRLAMKYHPDRNQGDKE--AEAKFKEIKEAYEVL 56

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +LG+  +      +++ AF+  ALK HPDK+  +    A   F     AY+ L
Sbjct: 7   LLGVSKTA--SSREIRQAFKKLALKLHPDKNPNNPN--AHGDFLKINRAYEVL 55

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +LGL  S    +  ++ A+     ++HPDK         EEK K     YK +
Sbjct: 13  LLGLERSAWGNIPLMRKAYLKKCKEFHPDKGG------DEEKMKKMNTLYKKM 59

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 228 TILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS---QAMAEEKFKLCLNAYKSL 281
           T+ GLP    L    +   F+    ++HPDK    S   Q  A ++      A+++L
Sbjct: 5   TLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
            ++K A+   A K+HPD ++   +  A+EKF     AY+ L
Sbjct: 22  KEIKKAYYQLAKKYHPDTNKDDPK--AKEKFSQLAEAYEVL 60

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +D+K A+R  ALK+HPDK+       A E FK    AY  L
Sbjct: 22  EDLKKAYRRLALKFHPDKNHAPG---ATEAFKAIGTAYAVL 59

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 42.8 bits (101), Expect = 6e-06
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +LG+ P      D+V  A+R  A+  HPDK        +E+ FK  +NA  +L
Sbjct: 32  MLGVKPGA--SRDEVNKAYRKLAVLLHPDKCV---APGSEDAFKAVVNARTAL 79

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +LGL  S    +  ++ A+     ++HPDK         EEK K     YK +
Sbjct: 16  LLGLERSAWGNIPLMRKAYLKKCKEFHPDKGG------DEEKMKKMNTLYKKM 62

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
             +K AF   A+K+HPDK++      AE KF+    AY++L
Sbjct: 22  RQIKKAFHKLAMKYHPDKNKSPD---AEAKFREIAEAYETL 59

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
           +L LP         ++ A++  +L  HPDK  G S        +   + + + 
Sbjct: 16  LLKLPRQLWGDFGRMQQAYKQQSLLLHPDK--GGS----HALMQELNSLWGTF 62

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQG-SSQAMAEEKFKLCLNAYKSL 281
           ILG+  +   K  ++  A+R  AL+WHPD  Q    +  AE+KF     A + L
Sbjct: 387 ILGVKRNA--KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVL 438

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSL 281
            D+K A++  A +WHPDK++      AE++F     AY+ L
Sbjct: 32  ADIKKAYKKLAREWHPDKNK---DPGAEDRFIQISKAYEIL 69

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 39.6 bits (92), Expect = 8e-05
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAM-AEEKFKLCLNAYKSL 281
           + VK  +R + L  HP K  G      A+  F    +A+   
Sbjct: 48  EQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEF 89

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLC 282
           +LG+  +      +++ AF+  ALK HPDK+  +    A   F     AY+ L 
Sbjct: 26  LLGVSKTA--SSREIRQAFKKLALKLHPDKNPNNPN--AHGDFLKINRAYEVLK 75

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 241 DDVKNAFRLSALKWHPDKHQGSSQAM-AEEKFKLCLNAYKSL 281
           + VK  +R + L  HPDK  G      A+  F    +A+   
Sbjct: 132 EQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEF 173

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 5/44 (11%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFK 272
           ILG+ P+    L  +K A+R  A K+HPD  + +    AE KFK
Sbjct: 33  ILGVQPTD--DLKTIKTAYRRLARKYHPDVSKEND---AEAKFK 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.66
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.66
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.66
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.65
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.64
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.64
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.64
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.64
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.63
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.63
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.61
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.61
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.61
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.61
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.6
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.58
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.57
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.56
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.56
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.55
2guz_A	71	Mitochondrial import inner membrane translocase su	99.55
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.55
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.54
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.51
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.51
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.5
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.49
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.48
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.47
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.44
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.34
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.29
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.16
2guz_B	65	Mitochondrial import inner membrane translocase su	98.73
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.69

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=7e-17  Score=122.69  Aligned_cols=61  Identities=36%  Similarity=0.600  Sum_probs=56.4

Q ss_pred             CccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          222 GSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       222 ~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      +..++|+||||++++  +.++||+|||+|+++||||++++. .+.++++|++|++||++|+||.
T Consensus         7 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~d~~   67 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQA--SSEAIKKAYRKLALKWHPDKNPEN-KEEAERRFKQVAEAYEVLSDAK   67 (82)
T ss_dssp             SSCCHHHHTTCCTTC--CHHHHHHHHHHHHTTSCTTTCSTT-HHHHHHHHHHHHHHHHHHSSTT
T ss_pred             CCcCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc-HHHHHHHHHHHHHHHHHHCCHH
Confidence            347999999999999  999999999999999999999875 5678999999999999999986

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.66  E-value=5.9e-17  Score=125.83  Aligned_cols=63  Identities=27%  Similarity=0.350  Sum_probs=56.9

Q ss_pred             CCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC----chHHHHHHHHHHHHHHHHhhccc
Q 023167          221 VGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGS----SQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       221 ~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~----~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      +...++|+||||++++  +.++||+|||+|+++||||+++..    .++.++++|++|++||++|+||.
T Consensus        13 ~~~~~~y~iLgv~~~a--s~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~   79 (94)
T 1wjz_A           13 TLKKDWYSILGADPSA--NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEE   79 (94)
T ss_dssp             SSCSCHHHHTTCCTTC--CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             CCCCChHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHH
Confidence            4457999999999999  999999999999999999998743    24679999999999999999986

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=7.6e-17  Score=125.61  Aligned_cols=61  Identities=31%  Similarity=0.475  Sum_probs=55.6

Q ss_pred             CCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          221 VGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       221 ~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ....++|+||||++++  +.++||+|||+|+++||||++++.   .++++|++|++||++|+||.+
T Consensus        24 ~~~~~~y~iLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~---~~~~~f~~i~~Ay~~L~d~~~   84 (90)
T 2ys8_A           24 RNSKDSWDMLGVKPGA--SRDEVNKAYRKLAVLLHPDKCVAP---GSEDAFKAVVNARTALLKNIK   84 (90)
T ss_dssp             HTCSSHHHHHTCCTTC--CHHHHHHHHHHHHHHHCTTTCCCT---THHHHHHHHHHHHHHHHHHHC
T ss_pred             hcCCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHHCCccc
Confidence            3447999999999999  999999999999999999999864   588999999999999999864

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=8.6e-17  Score=121.40  Aligned_cols=60  Identities=32%  Similarity=0.515  Sum_probs=55.0

Q ss_pred             CccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          222 GSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       222 ~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ...++|+||||++++  +.++||+|||+|+++||||++++.  +.++++|++|++||++|+||.
T Consensus         5 ~~~~~y~iLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~   64 (79)
T 2dn9_A            5 SSGDYYQILGVPRNA--SQKEIKKAYYQLAKKYHPDTNKDD--PKAKEKFSQLAEAYEVLSDEV   64 (79)
T ss_dssp             CCSCHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCSSC--TTHHHHHHHHHHHHHHHHSHH
T ss_pred             CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--HHHHHHHHHHHHHHHHHCCHH
Confidence            346999999999999  999999999999999999999864  358999999999999999985

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.1e-16  Score=126.38  Aligned_cols=62  Identities=29%  Similarity=0.486  Sum_probs=56.4

Q ss_pred             CCCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          220 TVGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       220 ~~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      .+...++|+||||++++  +.++||+|||+|+++||||++++.  +.++++|++|++||++|+||.
T Consensus        13 ~~~~~~~Y~vLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~~L~d~~   74 (99)
T 2yua_A           13 SYSRTALYDLLGVPSTA--TQAQIKAAYYRQCFLYHPDRNSGS--AEAAERFTRISQAYVVLGSAT   74 (99)
T ss_dssp             SSCSSHHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTCSSC--SHHHHHHHHHHHHHHHTTSHH
T ss_pred             CCCccCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--HHHHHHHHHHHHHHHHHCCHH
Confidence            34557999999999999  999999999999999999999864  368999999999999999985

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.1e-16  Score=124.35  Aligned_cols=61  Identities=39%  Similarity=0.678  Sum_probs=56.1

Q ss_pred             CccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          222 GSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       222 ~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      +..++|+||||++++  +.++||+|||+|+++||||+++.. .+.++++|++|++||++|+||.
T Consensus         7 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~d~~   67 (92)
T 2dmx_A            7 GMANYYEVLGVQASA--SPEDIKKAYRKLALRWHPDKNPDN-KEEAEKKFKLVSEAYEVLSDSK   67 (92)
T ss_dssp             CCCCHHHHHTCCTTC--CTTHHHHHHHHHHHHTCTTTCSSC-SHHHHHHHHHHHHHHHHHHSHH
T ss_pred             CCcCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCCCCCCcc-HHHHHHHHHHHHHHHHHHCCHH
Confidence            347999999999999  999999999999999999999875 4679999999999999999985

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.7e-16  Score=122.74  Aligned_cols=58  Identities=41%  Similarity=0.588  Sum_probs=54.3

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..++|+||||++++  +.++||+|||+|+++||||+++.   +.++++|++|++||++|+||.
T Consensus         6 ~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~---~~a~~~f~~i~~Ay~~L~d~~   63 (88)
T 2ctr_A            6 SGSYYDILGVPKSA--SERQIKKAFHKLAMKYHPDKNKS---PDAEAKFREIAEAYETLSDAN   63 (88)
T ss_dssp             CCSHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCCS---HHHHHHHHHHHHHHHHHHSSH
T ss_pred             CCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCC---hHHHHHHHHHHHHHHHHCCHH
Confidence            46999999999999  99999999999999999999985   468999999999999999985

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.64  E-value=1e-16  Score=125.37  Aligned_cols=62  Identities=24%  Similarity=0.246  Sum_probs=56.4

Q ss_pred             CCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          221 VGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       221 ~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      +...++|+||||++++  +.++||+|||+|+++||||++++. .+.|+++|++|++||++|+|..
T Consensus        13 ~~~~~~y~vLgv~~~a--s~~eIKkaYrkla~~~HPDk~~~~-~~~a~~~F~~I~~AYevL~~~~   74 (88)
T 1iur_A           13 SILKEVTSVVEQAWKL--PESERKKIIRRLYLKWHPDKNPEN-HDIANEVFKHLQNEINRLEKQA   74 (88)
T ss_dssp             SCHHHHHHHHHHTTSS--CSHHHHHHHHHHHHHTCTTTSSSC-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHhCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCc-hHHHHHHHHHHHHHHHHHHhhc
Confidence            3457999999999999  999999999999999999999875 4679999999999999999854

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.3e-16  Score=120.25  Aligned_cols=59  Identities=37%  Similarity=0.491  Sum_probs=54.6

Q ss_pred             CccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          222 GSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       222 ~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ...++|+||||++++  +.++||+|||+|+++||||+++.   +.+++.|++|++||++|+||.
T Consensus         5 ~~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~---~~~~~~f~~i~~Ay~~L~d~~   63 (78)
T 2ctp_A            5 SSGDYYEILGVSRGA--SDEDLKKAYRRLALKFHPDKNHA---PGATEAFKAIGTAYAVLSNPE   63 (78)
T ss_dssp             CSCCHHHHHTCCTTC--CHHHHHHHHHHHHTTSCTTTCSS---HHHHHHHHHHHHHHHHHTSHH
T ss_pred             CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHHCCHH
Confidence            347999999999999  99999999999999999999986   368999999999999999985

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.63  E-value=2e-16  Score=118.99  Aligned_cols=57  Identities=37%  Similarity=0.542  Sum_probs=53.5

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      .++|+||||++++  +.++||+|||+|+++||||++++.   .+++.|+.|++||++|+||.
T Consensus         3 ~~~y~iLgv~~~a--s~~~Ik~ayr~l~~~~HPD~~~~~---~~~~~f~~i~~Ay~~L~d~~   59 (77)
T 1hdj_A            3 KDYYQTLGLARGA--SDEEIKRAYRRQALRYHPDKNKEP---GAEEKFKEIAEAYDVLSDPR   59 (77)
T ss_dssp             CCSHHHHTCCTTC--CHHHHHHHHHHHHHTTCTTTCCCT---THHHHHHHHHHHHHHTTCHH
T ss_pred             CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHHCCHH
Confidence            5899999999999  999999999999999999999864   58999999999999999985

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=3.4e-16  Score=121.03  Aligned_cols=58  Identities=29%  Similarity=0.508  Sum_probs=54.2

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..++|+||||++++  +.++||+|||+|+++||||++++.   .++++|++|++||++|+||.
T Consensus        16 ~~d~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~---~~~~~f~~i~~Ay~~L~d~~   73 (88)
T 2cug_A           16 DFDPYRVLGVSRTA--SQADIKKAYKKLAREWHPDKNKDP---GAEDRFIQISKAYEILSNEE   73 (88)
T ss_dssp             SSCHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTCCST---THHHHHHHHHHHHHHHHSHH
T ss_pred             CCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCh---hHHHHHHHHHHHHHHHCCHH
Confidence            46999999999999  999999999999999999999864   58999999999999999985

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.61  E-value=4.6e-16  Score=123.55  Aligned_cols=59  Identities=42%  Similarity=0.687  Sum_probs=55.1

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      .++|+||||++++  +.++||+|||+|+++||||++++. ++.++++|++|++||++|+||.
T Consensus         2 ~d~Y~iLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~-~~~a~~~f~~I~~AY~vL~d~~   60 (99)
T 2lgw_A            2 ASYYEILDVPRSA--SADDIKKAYRRKALQWHPDKNPDN-KEFAEKKFKEVAEAYEVLSDKH   60 (99)
T ss_dssp             CCHHHHSSSCTTS--CHHHHHHHHHHHHHHTSTTTCCSC-CHHHHHHHHHHHHHHHHHHSHH
T ss_pred             CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCcc-HHHHHHHHHHHHHHHHHHCCHH
Confidence            5899999999999  999999999999999999999875 4679999999999999999985

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=5.3e-16  Score=125.13  Aligned_cols=60  Identities=27%  Similarity=0.379  Sum_probs=55.3

Q ss_pred             CccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          222 GSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       222 ~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ...++|+||||++++  +.++||+|||+|+++||||++++.  +.|+++|++|++||++|+||.
T Consensus        18 ~~~d~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~vL~d~~   77 (112)
T 2ctq_A           18 DTEDYYTLLGCDELS--SVEQILAEFKVRALECHPDKHPEN--PKAVETFQKLQKAKEILTNEE   77 (112)
T ss_dssp             CCCCHHHHTTCCTTS--CHHHHHHHHHHHHHTTCTTTCTTC--STHHHHHHHHHHHHHHHHSHH
T ss_pred             CCCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHCCHH
Confidence            457999999999999  999999999999999999999864  268999999999999999985

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.61  E-value=5.1e-16  Score=115.85  Aligned_cols=56  Identities=34%  Similarity=0.572  Sum_probs=52.3

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..++|+||||++++  +.++||+|||+|+++||||++++.     .+.|++|++||++|+||.
T Consensus         7 ~~~~y~iLgl~~~a--~~~eIk~ayr~l~~~~HPD~~~~~-----~~~f~~i~~Ay~~L~d~~   62 (73)
T 2och_A            7 ETGYYDVLGVKPDA--SDNELKKAYRKMALKFHPDKNPDG-----AEQFKQISQAYEVLSDEK   62 (73)
T ss_dssp             CCCHHHHHTCCTTC--CHHHHHHHHHHHHHHTCTTTCTTC-----HHHHHHHHHHHHHHTSHH
T ss_pred             CCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCcCH-----HHHHHHHHHHHHHHCCHH
Confidence            46999999999999  999999999999999999999864     579999999999999985

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.60  E-value=6.2e-16  Score=124.32  Aligned_cols=59  Identities=39%  Similarity=0.503  Sum_probs=54.9

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..++|+||||++++  +.++||+|||+|+++||||++++.  +.++++|++|++||++|+||.
T Consensus        16 ~~~~Y~vLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~--~~a~~~f~~i~~Ay~vL~d~~   74 (109)
T 2ctw_A           16 GESLYHVLGLDKNA--TSDDIKKSYRKLALKYHPDKNPDN--PEAADKFKEINNAHAILTDAT   74 (109)
T ss_dssp             SCCHHHHHTCCTTC--CHHHHHHHHHHHHHHSCTTTSTTC--HHHHHHHHHHHHHHHHHTCHH
T ss_pred             CCCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHcCHH
Confidence            36999999999999  999999999999999999999874  468999999999999999985

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.58  E-value=1.1e-15  Score=119.18  Aligned_cols=56  Identities=36%  Similarity=0.590  Sum_probs=52.2

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..++|+||||++++  +.++||+|||+|+++||||++++.     .++|++|++||++|+||.
T Consensus         7 ~~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~-----~~~f~~i~~Ay~~L~d~~   62 (92)
T 2o37_A            7 ETKLYDLLGVSPSA--NEQELKKGYRKAALKYHPDKPTGD-----TEKFKEISEAFEILNDPQ   62 (92)
T ss_dssp             CCHHHHHHTCCTTC--CHHHHHHHHHHHHHHHCTTSTTCC-----HHHHHHHHHHHHHHTSHH
T ss_pred             CCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCh-----HHHHHHHHHHHHHHCCHH
Confidence            46999999999999  999999999999999999999875     569999999999999985

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.57  E-value=1e-15  Score=121.16  Aligned_cols=58  Identities=21%  Similarity=0.276  Sum_probs=53.1

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc-hHHHHHHHHHHHHHHHHhhc
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS-QAMAEEKFKLCLNAYKSLCA  283 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~-k~~AeekFk~I~eAYevLsD  283 (286)
                      .++|.+|||++.+  +.++||+|||++|++||||++++.. ...|+++|++|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~a--s~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLV--TPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSS--SHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            4889999999999  9999999999999999999998753 34689999999999999986

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.56  E-value=5.2e-16  Score=123.17  Aligned_cols=58  Identities=33%  Similarity=0.558  Sum_probs=53.9

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      .++|+||||++++  +.++||+|||+|+++||||++++.  +.++++|++|++||++|+||.
T Consensus         3 ~~~y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~--~~a~~~f~~i~~Ay~~L~d~~   60 (103)
T 1bq0_A            3 QDYYEILGVSKTA--EEREIRKAYKRLAMKYHPDRNQGD--KEAEAKFKEIKEAYEVLTDSQ   60 (103)
T ss_dssp             CCSTTTTSSCSSC--CHHHHHHHHHHHHTTTCTTTCTTT--CTHHHHHHHHTTTTTSTTCSH
T ss_pred             CCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHHCCHH
Confidence            5899999999999  999999999999999999999864  358899999999999999985

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.56  E-value=1.1e-15  Score=116.88  Aligned_cols=54  Identities=19%  Similarity=0.332  Sum_probs=50.2

Q ss_pred             cccccccCcCCC--CCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          224 SSDRTILGLPPS--GPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       224 ~d~Y~VLGL~~~--a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      .++|+||||+++  +  +.++||+|||+|+++||||++++      +++|++|++||++|+|+.
T Consensus        11 ~~~y~iLgl~~~~~a--~~~eIk~aYr~la~~~HPDk~~~------~~~f~~i~~AYe~L~~~~   66 (79)
T 1faf_A           11 ERLLELLKLPRQLWG--DFGRMQQAYKQQSLLLHPDKGGS------HALMQELNSLWGTFKTEV   66 (79)
T ss_dssp             HHHHHHHTCCSSSTT--CHHHHHHHHHHHHHHSSGGGSCC------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCC--CHHHHHHHHHHHHHHHCcCCCCC------HHHHHHHHHHHHHHhhHH
Confidence            689999999999  8  99999999999999999999764      579999999999999875

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.55  E-value=2.7e-15  Score=120.04  Aligned_cols=63  Identities=25%  Similarity=0.419  Sum_probs=56.7

Q ss_pred             CccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-CchHHHHHHHHHHHHHHHHhhccc
Q 023167          222 GSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQG-SSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       222 ~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~-~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ...++|+||||++++ ++.++||+|||+|+++||||++++ ..++.++++|++|++||++|+||.
T Consensus        13 ~~~~~y~iLgv~~~a-~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~   76 (109)
T 2qsa_A           13 GLENCYDVLEVNREE-FDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDE   76 (109)
T ss_dssp             TTSCHHHHTTCCGGG-CCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred             CCCCHHHHcCCCCCC-CCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHH
Confidence            357999999999985 699999999999999999999986 335789999999999999999985

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.55  E-value=3e-15  Score=111.94  Aligned_cols=57  Identities=23%  Similarity=0.091  Sum_probs=50.9

Q ss_pred             CCccccccccCcCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          221 VGSSSDRTILGLPP-SGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       221 ~~~~d~Y~VLGL~~-~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      +...++|+||||++ ++  +.++||+|||+|++++|||+++.      .++|++|++||++|+|+.
T Consensus        11 m~~~~~y~iLgl~~~~a--~~~eIk~ayr~l~~~~HPDk~g~------~~~f~~i~~Aye~L~~~~   68 (71)
T 2guz_A           11 MNSKEALQILNLTENTL--TKKKLKEVHRKIMLANHPDKGGS------PFLATKINEAKDFLEKRG   68 (71)
T ss_dssp             CCHHHHHHHTTCCTTTC--CHHHHHHHHHHHHHHHCGGGTCC------HHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHcCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCC------HHHHHHHHHHHHHHhhhh
Confidence            44579999999999 78  99999999999999999999643      569999999999999874

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.55  E-value=4.1e-15  Score=125.52  Aligned_cols=63  Identities=27%  Similarity=0.353  Sum_probs=56.9

Q ss_pred             CCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc----hHHHHHHHHHHHHHHHHhhccc
Q 023167          221 VGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS----QAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       221 ~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~----k~~AeekFk~I~eAYevLsDp~  285 (286)
                      +...+||+||||++++  +.++||+|||+|++++|||++++..    ++.|.++|++|++||++|+||.
T Consensus         7 ~~~~~~y~iLgv~~~a--~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~   73 (155)
T 2l6l_A            7 MPKKDWYSILGADPSA--NISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEE   73 (155)
T ss_dssp             CCCSHHHHHHTCCTTC--CHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHH
T ss_pred             CCCCChhHhcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHH
Confidence            4457999999999999  9999999999999999999987652    4568899999999999999985

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.54  E-value=2.1e-15  Score=121.56  Aligned_cols=60  Identities=23%  Similarity=0.269  Sum_probs=53.0

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--C---chHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQG--S---SQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~--~---~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..+||.|||++. +  +.++||+|||+++++|||||+++  .   .+..|+++|++|++||++|+|+.
T Consensus        40 ~~d~Y~vl~~~~-A--s~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM-I--EGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS-C--SHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC-C--CHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            369999999996 8  99999999999999999999763  1   14568999999999999999985

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.51  E-value=6.2e-15  Score=126.78  Aligned_cols=58  Identities=28%  Similarity=0.390  Sum_probs=54.0

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      .++|+||||++++  +.++||+|||+|+++||||++++.  +.|+++|++|++||++|+||.
T Consensus         2 ~~~y~~l~~~~~a--~~~~ik~ay~~l~~~~HPD~~~~~--~~~~~~f~~i~~Ay~~L~~~~   59 (210)
T 3apq_A            2 QNFYSLLGVSKTA--SSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDED   59 (210)
T ss_dssp             CCHHHHHTCCTTC--CHHHHHHHHHHHHHHHCGGGCTTC--TTHHHHHHHHHHHHHHHTSHH
T ss_pred             CCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhCCHH
Confidence            5899999999999  999999999999999999999764  368999999999999999985

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.50  E-value=9.7e-15  Score=126.28  Aligned_cols=61  Identities=26%  Similarity=0.325  Sum_probs=56.2

Q ss_pred             ccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc---hHHHHHHHHHHHHHHHHhhccc
Q 023167          225 SDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS---QAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       225 d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~---k~~AeekFk~I~eAYevLsDp~  285 (286)
                      +||+||||++++.++..+||++||+|+++||||++++..   +..|.++|+.|++||++|+||.
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~   65 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPL   65 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            799999999999889999999999999999999988753   4568899999999999999985

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.49  E-value=1.3e-14  Score=127.43  Aligned_cols=61  Identities=21%  Similarity=0.282  Sum_probs=55.5

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc-hHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS-QAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~-k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .++|+||||++.+  +.++||+|||+|+++||||++++.. .+.|+++|++|++||++|+||.+
T Consensus       117 ~d~Y~vLgv~~~A--s~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~k  178 (182)
T 1n4c_A          117 ETKWKPVGMADLV--TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQ  178 (182)
T ss_dssp             CCCCCCCCGGGGS--SHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cchhhcCCCCCCC--CHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHh
Confidence            5899999999999  9999999999999999999988653 33599999999999999999863

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.48  E-value=3e-15  Score=122.25  Aligned_cols=56  Identities=27%  Similarity=0.316  Sum_probs=50.1

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      .++|+||||++++..+.++||+|||+|++++|||++++      +++|++|++||++|+||.
T Consensus         8 ~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~------~e~f~~I~~AYevL~d~~   63 (114)
T 1gh6_A            8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGV   63 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT------TTTTHHHHHHHHHHHHHH
T ss_pred             hhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc------HHHHHHHHHHHHHHCCHH
Confidence            58999999999993333999999999999999999875      468999999999999985

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.47  E-value=3e-14  Score=126.82  Aligned_cols=63  Identities=21%  Similarity=0.249  Sum_probs=56.2

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc---hHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS---QAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~---k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..+||+||||++.+.++.++||++||+|+++||||++++..   +..|+++|++|++||++|+||.
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~  107 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPL  107 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence            46999999999985559999999999999999999988653   4568899999999999999986

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.44  E-value=7.4e-15  Score=138.65  Aligned_cols=61  Identities=33%  Similarity=0.451  Sum_probs=0.0

Q ss_pred             CCccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhcccC
Q 023167          221 VGSSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       221 ~~~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      +...+||+||||++++  +.++||+|||+||++||||++++.   .|+++|++|++||++|+||.+
T Consensus        25 m~~~d~Y~vLgv~~~a--s~~eIk~aYr~la~~~HPDk~~~~---~a~~~f~~i~~Ay~vL~d~~~   85 (329)
T 3lz8_A           25 MELKDYYAILGVQPTD--DLKTIKTAYRRLARKYHPDVSKEN---DAEAKFKDLAEAWEVLKDEQR   85 (329)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             ccccCHHHHcCcCCCC--CHHHHHHHHHHHHHHHCCCCCCCh---HHHHHHHHHHHHHHHhhhhhh
Confidence            4557999999999999  999999999999999999998864   689999999999999999964

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.34  E-value=8.5e-14  Score=121.52  Aligned_cols=56  Identities=27%  Similarity=0.316  Sum_probs=48.0

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      .++|+||||++++..+.++||+|||++|+++|||++++      +++|++|++||++|+||.
T Consensus        11 ~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~------~e~F~~I~~AYevLsdp~   66 (174)
T 2pf4_E           11 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGV   66 (174)
T ss_dssp             HHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C------CTTTTHHHHHHHHHHHHH
T ss_pred             ccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC------HHHHHHHHHHHHHhCCHH
Confidence            68999999999993337999999999999999999876      368999999999999985

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.29  E-value=5.5e-13  Score=116.48  Aligned_cols=57  Identities=23%  Similarity=0.273  Sum_probs=50.7

Q ss_pred             Ccccccccc------CcCC-CCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          222 GSSSDRTIL------GLPP-SGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       222 ~~~d~Y~VL------GL~~-~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ...+||+||      |+++ ++  +.++||+|||+|+++||||++++     +.++|+.|++||++|+||.
T Consensus         9 ~~~d~y~ll~~~~p~~~~~~~a--~~~eIk~aYr~la~~~HPDk~~~-----a~~~f~~i~~AY~vL~dp~   72 (181)
T 3uo3_A            9 FTSTFYELFPKTFPKKLPIWTI--DQSRLRKEYRQLQAQHHPDMAQQ-----GSEQSSTLNQAYHTLKDPL   72 (181)
T ss_dssp             CSCCTGGGCTTTCTTCSCCSCC--CHHHHHHHHHHHHHTCCTTSCCS-----CSSGGGSHHHHHHHHHSHH
T ss_pred             CCCCHHHHhccccccCCCCCCC--CHHHHHHHHHHHHHHhCcCCCcc-----HHHHHHHHHHHHHHHcChH
Confidence            347999999      4665 66  99999999999999999999986     5789999999999999985

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.16  E-value=2.4e-12  Score=130.17  Aligned_cols=59  Identities=27%  Similarity=0.387  Sum_probs=32.2

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..+||+||||++++  +.++||+|||+|+++||||++++.  +.|+++|++|++||++|+||.
T Consensus        20 ~~~~y~~lg~~~~a--~~~~i~~ay~~l~~~~hpd~~~~~--~~~~~~f~~i~~ay~~L~~~~   78 (780)
T 3apo_A           20 DQNFYSLLGVSKTA--SSREIRQAFKKLALKLHPDKNPNN--PNAHGDFLKINRAYEVLKDED   78 (780)
T ss_dssp             ---CHHHHTCCTTC--CHHHHHHHHCC-------------------------CTHHHHHHSHH
T ss_pred             CCCHHHHcCCCCCC--CHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHHcChH
Confidence            46999999999999  999999999999999999999754  468999999999999999985

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.73  E-value=7.8e-09  Score=76.83  Aligned_cols=54  Identities=17%  Similarity=0.028  Sum_probs=47.0

Q ss_pred             CccccccccCcCCC---CCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhc
Q 023167          222 GSSSDRTILGLPPS---GPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCA  283 (286)
Q Consensus       222 ~~~d~Y~VLGL~~~---a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsD  283 (286)
                      ....+|.||||++.   +  +.++|+++||+|....|||+++.      ......|++|+++|..
T Consensus         2 t~~EA~~ILgv~~~~~~a--~~~~Ik~~yr~Lm~~nhPDkGGS------~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            2 TLDESCKILNIEESKGDL--NMDKINNRFNYLFEVNDKEKGGS------FYLQSKVYRAAERLKW   58 (65)
T ss_dssp             CHHHHHHHTTCCGGGTCC--SHHHHHHHHHHHHHHTCGGGTCC------HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhCCCCCcCcC--CHHHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHHHHH
Confidence            34578999999998   8  99999999999999999999754      5677899999998864

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.69  E-value=1.1e-08  Score=92.19  Aligned_cols=61  Identities=31%  Similarity=0.438  Sum_probs=55.9

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc-hHHHHHHHHHHHHHHHHhhcccC
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS-QAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~-k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      .++|.+||+...+  +.++|+++|+++++++|||+.+... ++.++++|++|.+||++|+||.+
T Consensus       382 ~~~y~~lg~~~~~--~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~  443 (450)
T 2y4t_A          382 RDYYKILGVKRNA--KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM  443 (450)
T ss_dssp             CCSGGGSCSSTTC--CTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred             hhHHHHhCCCccC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            4899999999999  9999999999999999999988653 57799999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	5e-05

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 38.9 bits (90), Expect = 5e-05
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 229 ILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAE---EKFKLCLNAYKSL 281
           + GLP    L    +   F+    ++HPDK    SQA      ++      A+++L
Sbjct: 6   LFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.7
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.66
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.62
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.59
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.58
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.56
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.49

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=9.2e-18  Score=125.50  Aligned_cols=59  Identities=32%  Similarity=0.549  Sum_probs=54.7

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..|||+||||++++  +.++||+|||+|+++||||+++++  +.+++.|++|++||+||+||.
T Consensus         2 k~dyY~vLgv~~~A--s~~eIk~aYr~l~~~~HPDk~~~~--~~~~~~f~~i~~Ay~vL~d~~   60 (75)
T d1xbla_           2 KQDYYEILGVSKTA--EEREIRKAYKRLAMKYHPDRNQGD--KEAEAKFKEIKEAYEVLTDSQ   60 (75)
T ss_dssp             CCCTTTTTCCSSSC--CHHHHHHHHHHHHHHTCCTTCTTT--CHHHHHHHHHHHHHHHTTSSH
T ss_pred             CCCHHHHcCCCCCc--CHHHHHHHHHHHHhhhhhhccCCC--hHHHHHHHHHHHHHHhcCCHH
Confidence            36999999999999  999999999999999999999875  368889999999999999985

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=3.7e-17  Score=127.25  Aligned_cols=61  Identities=28%  Similarity=0.371  Sum_probs=56.1

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc----hHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS----QAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~----k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..|||+||||++++  +.++||+||++|+++||||+++...    .+.++++|++|++||++|+||.
T Consensus        15 ~~d~Y~iLgv~~~a--s~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~   79 (94)
T d1wjza_          15 KKDWYSILGADPSA--NMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEE   79 (94)
T ss_dssp             CSCHHHHTTCCTTC--CHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred             ccChHHHcCCCCCc--CHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            36999999999999  9999999999999999999987642    5779999999999999999986

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.62  E-value=1.7e-17  Score=132.59  Aligned_cols=56  Identities=27%  Similarity=0.316  Sum_probs=51.7

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      .++|+||||+++|..+.++||+|||+||+++|||++++      .++|++|++||+||+||.
T Consensus         8 ~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~------~e~F~~I~~AY~vLsd~~   63 (114)
T d1gh6a_           8 LQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD------EEKMKKMNTLYKKMEDGV   63 (114)
T ss_dssp             HHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT------TTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh------HHHHHHHHHHHHHhCCHH
Confidence            68999999999997789999999999999999999885      358999999999999985

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3e-16  Score=117.42  Aligned_cols=57  Identities=37%  Similarity=0.542  Sum_probs=53.6

Q ss_pred             cccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          224 SSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       224 ~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      .|||+||||++++  +.++|++||+++++++|||++...   .+.+.|+.|++||++|+||.
T Consensus         3 kdyY~iLgv~~~a--s~~eIk~ay~~l~~~~hPD~~~~~---~~~~~~~~i~~Ay~vLsdp~   59 (77)
T d1hdja_           3 KDYYQTLGLARGA--SDEEIKRAYRRQALRYHPDKNKEP---GAEEKFKEIAEAYDVLSDPR   59 (77)
T ss_dssp             CCSHHHHTCCTTC--CHHHHHHHHHHHHHTTCTTTCCCT---THHHHHHHHHHHHHHTTCHH
T ss_pred             CChHHHcCCCCCc--CHHHHHHHHHHHHHHhccccccch---hHHHHHHHHHHHHHHhcCHH
Confidence            5899999999999  999999999999999999998875   47889999999999999986

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=3.7e-16  Score=116.41  Aligned_cols=61  Identities=26%  Similarity=0.325  Sum_probs=55.2

Q ss_pred             ccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc---hHHHHHHHHHHHHHHHHhhccc
Q 023167          225 SDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS---QAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       225 d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~---k~~AeekFk~I~eAYevLsDp~  285 (286)
                      |||+||||++.+.++.++|++|||++++++|||+..+..   ++.+++.|+.|++||++|+||.
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~   65 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPL   65 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            799999999987668999999999999999999976543   6678999999999999999986

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.58  E-value=2.4e-16  Score=119.69  Aligned_cols=57  Identities=16%  Similarity=0.196  Sum_probs=52.5

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..++|+||||++++.++.++||+|||+++++||||++++      +++|++|++||++|.|+.
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~------~e~~~~in~Ay~~L~d~~   66 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS------HALMQELNSLWGTFKTEV   66 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC------HHHHHHHHHHHHHHCCHH
Confidence            368999999999998899999999999999999999864      578999999999999975

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.7e-16  Score=119.28  Aligned_cols=60  Identities=25%  Similarity=0.285  Sum_probs=55.7

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHhhccc
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCLNAYKSLCAAL  285 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~k~~AeekFk~I~eAYevLsDp~  285 (286)
                      ..++|+||||..++  +.++||+|||+|+++||||+++++ .+.|+++|+.|++||++|.++.
T Consensus        15 ~~~~y~iL~v~~~a--s~~eIKkAYrrl~~~~HPDk~~~~-~~~a~~~f~~i~~Ay~~L~~~~   74 (88)
T d1iura_          15 LKEVTSVVEQAWKL--PESERKKIIRRLYLKWHPDKNPEN-HDIANEVFKHLQNEINRLEKQA   74 (88)
T ss_dssp             HHHHHHHHHHTTSS--CSHHHHHHHHHHHHHTCTTTSSSC-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCC--CHHHHHHHHHHHHHHhccccccch-hhHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999  999999999999999999999876 6789999999999999998753

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.49  E-value=7.7e-15  Score=114.99  Aligned_cols=62  Identities=21%  Similarity=0.280  Sum_probs=55.9

Q ss_pred             ccccccccCcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCc-hHHHHHHHHHHHHHHHHhhcccC
Q 023167          223 SSSDRTILGLPPSGPLKLDDVKNAFRLSALKWHPDKHQGSS-QAMAEEKFKLCLNAYKSLCAALS  286 (286)
Q Consensus       223 ~~d~Y~VLGL~~~a~~t~~eIKkAYRkLalk~HPDK~~~~~-k~~AeekFk~I~eAYevLsDp~k  286 (286)
                      ..++|.+|||...+  +.++||+|||++++.||||++++.. ++.|++.|++|++||++|+||.+
T Consensus        32 ~~~~y~~Lgl~~~~--t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~   94 (98)
T d1nz6a_          32 GETKWKPVGMADLV--TPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQ   94 (98)
T ss_dssp             TCCSCCCCCGGGCC--SHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cccCCeecCCCccC--CHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            35789999999999  9999999999999999999977653 56799999999999999999974