BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023168
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FVG|A Chain A, Spfh Domain Of Mouse Stomatin (Crystal Form 3)
Length = 133
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 44 AGRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVF 102
A ++ +R D+ E TKD+V ++V V YR A A ++N +
Sbjct: 11 AAKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRV--QNATLAVANITNADSATRLLAQ 68
Query: 103 DVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAM 161
+R ++ NL + EIA ++ L+ A +G ++ + I D++ V ++RAM
Sbjct: 69 TTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAM 127
>pdb|4FVJ|A Chain A, Spfh Domain Of The Mouse Stomatin (Crystal Form 2)
pdb|4FVJ|B Chain B, Spfh Domain Of The Mouse Stomatin (Crystal Form 2)
pdb|4FVJ|C Chain C, Spfh Domain Of The Mouse Stomatin (Crystal Form 2)
pdb|4FVJ|D Chain D, Spfh Domain Of The Mouse Stomatin (Crystal Form 2)
pdb|4FVJ|E Chain E, Spfh Domain Of The Mouse Stomatin (Crystal Form 2)
pdb|4FVJ|F Chain F, Spfh Domain Of The Mouse Stomatin (Crystal Form 2)
pdb|4FVJ|G Chain G, Spfh Domain Of The Mouse Stomatin (Crystal Form 2)
pdb|4FVJ|H Chain H, Spfh Domain Of The Mouse Stomatin (Crystal Form 2)
Length = 133
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 46 RLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDV 104
++ +R D+ E TKD+V ++V V YR A A ++N +
Sbjct: 13 KVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRV--QNATLAVANITNADSATRLLAQTT 70
Query: 105 IRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAM 161
+R ++ NL + EIA ++ L+ A +G ++ + I D++ V ++RAM
Sbjct: 71 LRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAM 127
>pdb|4FVF|A Chain A, Spfh Domain Of Mouse Stomatin (Crystal Form 1)
pdb|4FVF|B Chain B, Spfh Domain Of Mouse Stomatin (Crystal Form 1)
Length = 128
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 46 RLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDV 104
++ +R D+ E TKD+V ++V V YR A A ++N +
Sbjct: 8 KVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRV--QNATLAVANITNADSATRLLAQTT 65
Query: 105 IRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAM 161
+R ++ NL + EIA ++ L+ A +G ++ + I D++ V ++RAM
Sbjct: 66 LRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAM 122
>pdb|3BK6|A Chain A, Crystal Structure Of A Core Domain Of Stomatin From
Pyrococcus Horikoshii
pdb|3BK6|B Chain B, Crystal Structure Of A Core Domain Of Stomatin From
Pyrococcus Horikoshii
pdb|3BK6|C Chain C, Crystal Structure Of A Core Domain Of Stomatin From
Pyrococcus Horikoshii
Length = 188
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 47 LSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQA---YVF 102
+ LR Q LDV ET TKDNV V V A V +R + D ++ + I A
Sbjct: 9 VDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVV-----DPVKAVTQVKNYIMATSQISQ 63
Query: 103 DVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAM 161
+R+ + + +LD +++++ ++ +++A +G ++ I D+E +++AM
Sbjct: 64 TTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAM 122
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 2 GQTLGCIQVEQSKVVIREQFGKFD----HVLEPGCQCLPWCL-GYKVAGRLSLRVQQLDV 56
G+T G I + SK V R G F HV P PW + GY+ L RV +
Sbjct: 141 GRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEF-- 198
Query: 57 KCETKTKDNVFVNVVAS 73
+D +FVN+V
Sbjct: 199 -----IEDYIFVNLVPP 210
>pdb|2RPB|A Chain A, The Solution Structure Of Membrane Protein
Length = 113
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 44 AGRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVF 102
+ + LR +DV E KDNV V V A V Y+ + A Y +S+ I
Sbjct: 2 SDHVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVI--DPVKAVYNVSDFLMAIVKLAQ 59
Query: 103 DVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEP 153
+RA + ++ LD ++ I + EEL+K +G +I + I I+P
Sbjct: 60 TNLRAIIGEMELDETLSGRDIINARLREELDKITDRWGVKITRVEIQRIDP 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,910,897
Number of Sequences: 62578
Number of extensions: 236475
Number of successful extensions: 731
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 16
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)