Query 023168
Match_columns 286
No_of_seqs 191 out of 1567
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 08:56:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03407 Band_7_4 A subgroup of 100.0 1.9E-54 4E-59 381.2 32.3 262 12-275 1-262 (262)
2 PRK11029 FtsH protease regulat 100.0 9E-50 2E-54 358.5 31.1 251 4-264 17-320 (334)
3 KOG2620 Prohibitins and stomat 100.0 1.7E-51 3.8E-56 344.4 16.7 281 1-284 1-295 (301)
4 PRK10930 FtsH protease regulat 100.0 1.7E-48 3.7E-53 359.1 31.8 249 4-263 94-346 (419)
5 TIGR01933 hflK HflK protein. H 100.0 5.5E-48 1.2E-52 340.3 30.9 249 7-265 1-253 (261)
6 TIGR01932 hflC HflC protein. H 100.0 1.5E-47 3.2E-52 345.0 32.1 251 4-264 17-310 (317)
7 cd03405 Band_7_HflC Band_7_Hfl 100.0 1.1E-46 2.4E-51 328.5 29.2 234 7-249 1-241 (242)
8 cd03404 Band_7_HflK Band_7_Hfl 100.0 1.5E-45 3.2E-50 325.7 28.6 239 4-250 12-266 (266)
9 COG0330 HflC Membrane protease 100.0 1.3E-41 2.8E-46 304.3 30.9 257 4-266 18-280 (291)
10 cd03403 Band_7_stomatin_like B 100.0 1.8E-40 4E-45 284.4 27.1 213 10-261 1-214 (215)
11 cd03406 Band_7_3 A subgroup of 100.0 2.4E-37 5.2E-42 271.8 27.6 194 4-200 2-211 (280)
12 cd03401 Band_7_prohibitin Band 100.0 2E-37 4.4E-42 261.9 22.7 190 6-205 1-194 (196)
13 cd03402 Band_7_2 A subgroup of 100.0 2E-36 4.4E-41 258.6 21.8 170 6-180 1-179 (219)
14 KOG2621 Prohibitins and stomat 100.0 6.8E-35 1.5E-39 247.6 15.3 221 3-264 51-274 (288)
15 smart00244 PHB prohibitin homo 100.0 3.8E-31 8.2E-36 215.9 19.0 156 5-164 1-159 (160)
16 PF01145 Band_7: SPFH domain / 100.0 1.9E-31 4.1E-36 221.5 14.4 170 8-181 1-178 (179)
17 KOG3090 Prohibitin-like protei 99.9 2.3E-26 5.1E-31 189.1 18.3 235 2-264 33-274 (290)
18 KOG3083 Prohibitin [Posttransl 99.9 3.7E-25 8E-30 181.9 9.1 233 5-266 25-266 (271)
19 cd03408 Band_7_5 A subgroup of 99.9 1.7E-22 3.7E-27 172.0 16.0 157 5-164 14-206 (207)
20 KOG2962 Prohibitin-related mem 99.8 4.7E-19 1E-23 146.8 22.5 190 5-197 21-226 (322)
21 cd03400 Band_7_1 A subgroup of 99.8 1.9E-19 4E-24 141.1 11.9 118 47-164 3-123 (124)
22 KOG2668 Flotillins [Intracellu 99.8 1.4E-17 2.9E-22 145.6 22.6 159 7-169 2-172 (428)
23 cd03399 Band_7_flotillin Band_ 99.8 1.8E-18 4E-23 136.2 11.0 116 47-162 2-125 (128)
24 COG2268 Uncharacterized protei 99.7 3E-16 6.4E-21 146.9 22.4 194 6-201 33-251 (548)
25 cd02106 Band_7 The band 7 doma 99.7 1.7E-15 3.8E-20 116.9 14.1 111 52-164 7-120 (121)
26 PF13421 Band_7_1: SPFH domain 99.6 6.5E-13 1.4E-17 112.9 18.8 156 6-164 15-206 (211)
27 COG4260 Membrane protease subu 99.1 6E-09 1.3E-13 89.6 16.1 158 6-164 40-233 (345)
28 PTZ00491 major vault protein; 99.0 1.2E-07 2.7E-12 93.1 22.0 152 8-162 465-650 (850)
29 cd03405 Band_7_HflC Band_7_Hfl 97.4 0.0014 3E-08 57.0 9.6 40 181-220 167-206 (242)
30 PF12127 YdfA_immunity: SigmaW 97.2 0.01 2.2E-07 51.6 12.9 105 48-159 121-227 (316)
31 TIGR01932 hflC HflC protein. H 96.9 0.009 1.9E-07 54.2 10.4 40 178-217 219-258 (317)
32 PRK11029 FtsH protease regulat 96.9 0.011 2.4E-07 53.9 10.7 72 145-223 202-274 (334)
33 PRK13665 hypothetical protein; 96.8 0.014 3.1E-07 50.5 9.8 105 48-159 126-232 (316)
34 cd03407 Band_7_4 A subgroup of 96.7 0.0065 1.4E-07 53.6 7.5 51 175-225 152-202 (262)
35 cd03404 Band_7_HflK Band_7_Hfl 96.6 0.019 4E-07 50.7 10.1 73 145-224 161-234 (266)
36 TIGR01933 hflK HflK protein. H 96.6 0.03 6.6E-07 49.2 11.1 93 124-217 120-222 (261)
37 PF11978 MVP_shoulder: Shoulde 96.5 0.027 5.9E-07 42.7 8.6 96 59-154 10-117 (118)
38 KOG2620 Prohibitins and stomat 96.1 0.011 2.3E-07 51.1 5.3 53 165-217 178-230 (301)
39 PRK10930 FtsH protease regulat 95.5 0.16 3.4E-06 47.8 10.8 31 175-205 276-306 (419)
40 COG2268 Uncharacterized protei 94.5 0.58 1.3E-05 45.1 11.7 75 189-265 411-493 (548)
41 COG1580 FliL Flagellar basal b 94.1 0.52 1.1E-05 38.3 9.1 80 65-152 76-157 (159)
42 COG0330 HflC Membrane protease 93.6 0.26 5.7E-06 43.9 7.3 77 140-224 153-230 (291)
43 PRK01558 V-type ATP synthase s 90.2 1.7 3.6E-05 36.7 7.8 32 174-205 27-58 (198)
44 cd03401 Band_7_prohibitin Band 89.3 1.2 2.6E-05 37.1 6.3 25 193-217 171-195 (196)
45 PRK01005 V-type ATP synthase s 87.6 16 0.00035 31.0 12.1 34 174-207 32-65 (207)
46 PRK01558 V-type ATP synthase s 86.8 18 0.00038 30.5 12.7 38 177-214 19-56 (198)
47 PRK05697 flagellar basal body- 86.5 5.6 0.00012 31.4 8.1 53 99-151 78-134 (137)
48 PRK07718 fliL flagellar basal 86.0 6.6 0.00014 31.2 8.4 51 99-151 87-139 (142)
49 PF03748 FliL: Flagellar basal 85.0 12 0.00027 27.1 9.8 51 99-151 44-96 (99)
50 cd03403 Band_7_stomatin_like B 84.7 2 4.4E-05 36.2 5.2 28 188-215 155-182 (215)
51 COG4864 Uncharacterized protei 84.1 19 0.00041 30.8 10.5 93 62-161 140-233 (328)
52 PRK02292 V-type ATP synthase s 83.6 6.9 0.00015 32.5 7.9 41 161-201 6-46 (188)
53 KOG2668 Flotillins [Intracellu 83.3 5.6 0.00012 36.2 7.4 84 176-264 296-385 (428)
54 KOG3083 Prohibitin [Posttransl 83.1 2.5 5.5E-05 36.0 4.9 24 198-221 201-224 (271)
55 PRK07021 fliL flagellar basal 82.2 18 0.00039 29.3 9.6 53 99-151 103-159 (162)
56 PRK06654 fliL flagellar basal 82.1 18 0.00039 29.9 9.5 83 59-151 92-176 (181)
57 KOG3090 Prohibitin-like protei 82.1 2.9 6.4E-05 35.6 4.9 64 141-206 179-242 (290)
58 PLN03086 PRLI-interacting fact 82.1 2.9 6.4E-05 40.8 5.6 23 238-263 77-99 (567)
59 PRK01005 V-type ATP synthase s 82.0 9.9 0.00022 32.3 8.2 27 175-201 44-70 (207)
60 PRK12785 fliL flagellar basal 81.8 12 0.00027 30.5 8.5 51 99-151 111-163 (166)
61 PRK08404 V-type ATP synthase s 80.3 22 0.00048 26.6 8.9 36 160-195 4-39 (103)
62 TIGR01147 V_ATP_synt_G vacuola 78.6 19 0.00041 27.5 7.9 40 160-199 7-46 (113)
63 PRK05696 fliL flagellar basal 78.2 31 0.00068 28.1 9.9 53 99-151 111-167 (170)
64 PRK08455 fliL flagellar basal 77.6 23 0.00049 29.4 8.9 52 98-151 126-179 (182)
65 PRK04057 30S ribosomal protein 74.5 29 0.00062 29.4 8.7 83 58-149 100-184 (203)
66 PTZ00491 major vault protein; 74.1 11 0.00023 38.6 7.0 16 188-203 720-735 (850)
67 PRK09098 type III secretion sy 71.0 26 0.00056 30.3 8.0 33 172-204 42-74 (233)
68 CHL00118 atpG ATP synthase CF0 70.9 37 0.0008 27.2 8.4 8 114-121 47-54 (156)
69 PF03179 V-ATPase_G: Vacuolar 70.0 22 0.00047 26.5 6.5 43 161-203 6-48 (105)
70 PRK08476 F0F1 ATP synthase sub 70.0 52 0.0011 25.9 10.0 16 113-128 31-47 (141)
71 PF03179 V-ATPase_G: Vacuolar 69.5 15 0.00033 27.3 5.5 44 173-216 7-50 (105)
72 COG2811 NtpF Archaeal/vacuolar 69.1 47 0.001 25.1 9.4 44 160-203 8-51 (108)
73 TIGR03321 alt_F1F0_F0_B altern 69.0 68 0.0015 27.8 10.3 36 174-209 80-115 (246)
74 PRK08475 F0F1 ATP synthase sub 69.0 42 0.00091 27.3 8.4 33 174-206 97-129 (167)
75 PRK08476 F0F1 ATP synthase sub 66.8 54 0.0012 25.9 8.4 19 178-196 86-104 (141)
76 PRK09098 type III secretion sy 66.3 49 0.0011 28.6 8.7 8 242-249 139-146 (233)
77 PRK06568 F0F1 ATP synthase sub 66.3 68 0.0015 25.9 9.5 12 236-247 129-140 (154)
78 PRK14471 F0F1 ATP synthase sub 66.3 68 0.0015 25.8 10.0 17 113-129 32-49 (164)
79 PRK13461 F0F1 ATP synthase sub 65.8 54 0.0012 26.3 8.4 27 177-203 83-109 (159)
80 PRK14472 F0F1 ATP synthase sub 65.4 74 0.0016 26.0 10.3 17 113-129 42-59 (175)
81 PRK06231 F0F1 ATP synthase sub 65.0 51 0.0011 27.8 8.4 9 113-121 72-80 (205)
82 PRK14474 F0F1 ATP synthase sub 64.8 94 0.002 27.1 10.3 33 174-206 80-112 (250)
83 TIGR01147 V_ATP_synt_G vacuola 64.1 62 0.0014 24.6 8.1 39 172-210 8-46 (113)
84 PRK09174 F0F1 ATP synthase sub 63.8 90 0.002 26.4 10.3 18 113-130 77-95 (204)
85 CHL00019 atpF ATP synthase CF0 63.5 59 0.0013 26.8 8.4 31 175-205 100-130 (184)
86 PRK09174 F0F1 ATP synthase sub 63.1 63 0.0014 27.3 8.6 6 189-194 143-148 (204)
87 PRK14472 F0F1 ATP synthase sub 62.7 63 0.0014 26.4 8.4 25 178-202 97-121 (175)
88 PRK13453 F0F1 ATP synthase sub 62.4 65 0.0014 26.3 8.4 17 112-128 41-58 (173)
89 PRK13460 F0F1 ATP synthase sub 62.3 65 0.0014 26.2 8.4 32 174-205 91-122 (173)
90 PRK14475 F0F1 ATP synthase sub 62.1 84 0.0018 25.5 10.3 18 113-130 34-52 (167)
91 PRK14473 F0F1 ATP synthase sub 61.3 72 0.0016 25.7 8.4 17 113-129 32-49 (164)
92 PRK13454 F0F1 ATP synthase sub 60.8 76 0.0017 26.2 8.6 10 113-122 55-64 (181)
93 TIGR03321 alt_F1F0_F0_B altern 60.0 65 0.0014 28.0 8.4 38 166-203 83-120 (246)
94 PRK05759 F0F1 ATP synthase sub 60.0 80 0.0017 25.0 8.4 29 175-203 80-108 (156)
95 PRK13460 F0F1 ATP synthase sub 59.9 94 0.002 25.3 10.3 10 113-122 40-49 (173)
96 PRK07352 F0F1 ATP synthase sub 59.8 94 0.002 25.3 9.1 20 110-129 40-60 (174)
97 COG2811 NtpF Archaeal/vacuolar 59.5 57 0.0012 24.6 6.8 24 170-193 29-52 (108)
98 PRK09173 F0F1 ATP synthase sub 58.7 93 0.002 24.9 9.0 29 175-203 63-91 (159)
99 PF06188 HrpE: HrpE/YscL/FliH 58.0 42 0.0009 28.1 6.6 27 172-198 33-59 (191)
100 cd03406 Band_7_3 A subgroup of 57.4 21 0.00045 31.9 4.9 71 127-206 125-206 (280)
101 TIGR02926 AhaH ATP synthase ar 56.4 60 0.0013 23.1 6.4 28 167-194 7-34 (85)
102 PRK06568 F0F1 ATP synthase sub 56.0 1.1E+02 0.0023 24.7 9.5 18 177-194 67-84 (154)
103 CHL00019 atpF ATP synthase CF0 55.8 1.2E+02 0.0025 25.1 10.3 21 110-130 45-66 (184)
104 PF01015 Ribosomal_S3Ae: Ribos 55.0 53 0.0012 27.6 6.7 79 59-146 107-187 (194)
105 PRK08475 F0F1 ATP synthase sub 54.2 1.2E+02 0.0026 24.7 10.3 10 113-122 46-55 (167)
106 PRK13461 F0F1 ATP synthase sub 53.9 1.1E+02 0.0024 24.4 10.3 10 113-122 29-38 (159)
107 PRK14474 F0F1 ATP synthase sub 53.3 99 0.0021 27.0 8.4 35 167-201 84-118 (250)
108 PRK07353 F0F1 ATP synthase sub 52.8 1.1E+02 0.0023 23.8 8.4 8 114-121 30-37 (140)
109 PRK09173 F0F1 ATP synthase sub 51.7 1.2E+02 0.0027 24.2 9.5 8 114-121 27-34 (159)
110 PRK08404 V-type ATP synthase s 51.7 98 0.0021 23.0 8.4 29 177-205 36-64 (103)
111 KOG0994 Extracellular matrix g 50.8 3.5E+02 0.0076 29.3 12.6 26 259-284 1505-1530(1758)
112 PRK06669 fliH flagellar assemb 49.9 1.3E+02 0.0028 26.6 8.8 29 170-198 89-117 (281)
113 PRK07353 F0F1 ATP synthase sub 49.0 1.2E+02 0.0027 23.4 10.3 6 157-162 30-35 (140)
114 PRK05759 F0F1 ATP synthase sub 48.0 1.4E+02 0.003 23.6 10.3 9 113-121 28-36 (156)
115 PF06188 HrpE: HrpE/YscL/FliH 47.9 77 0.0017 26.4 6.7 20 168-187 40-59 (191)
116 COG1890 RPS1A Ribosomal protei 47.1 1.8E+02 0.0039 24.7 9.8 87 54-150 104-193 (214)
117 PRK06569 F0F1 ATP synthase sub 46.2 1.6E+02 0.0034 23.8 8.9 6 242-247 126-131 (155)
118 COG0711 AtpF F0F1-type ATP syn 45.2 1.6E+02 0.0035 23.7 10.2 17 113-129 30-47 (161)
119 PRK15322 invasion protein OrgB 42.9 2.1E+02 0.0045 24.3 11.3 24 238-264 98-121 (210)
120 PRK13455 F0F1 ATP synthase sub 42.8 1.9E+02 0.0041 23.7 10.3 18 113-130 51-69 (184)
121 PRK13428 F0F1 ATP synthase sub 41.4 3E+02 0.0064 26.3 10.3 15 236-250 144-158 (445)
122 PTZ00399 cysteinyl-tRNA-synthe 39.6 2.9E+02 0.0064 27.8 10.3 18 129-146 520-538 (651)
123 PHA00448 hypothetical protein 39.4 1.2E+02 0.0027 20.6 5.5 17 188-204 26-42 (70)
124 PF11740 KfrA_N: Plasmid repli 38.1 1.7E+02 0.0037 21.9 11.9 20 147-166 53-72 (120)
125 PRK13428 F0F1 ATP synthase sub 35.8 4E+02 0.0086 25.4 11.9 26 177-202 79-104 (445)
126 PRK03963 V-type ATP synthase s 34.3 2.7E+02 0.0058 23.0 10.7 10 258-267 122-131 (198)
127 TIGR03825 FliH_bacil flagellar 34.2 2.3E+02 0.0049 24.7 7.8 17 178-194 49-65 (255)
128 PRK06669 fliH flagellar assemb 29.9 2.8E+02 0.006 24.5 7.7 36 173-208 81-116 (281)
129 TIGR02926 AhaH ATP synthase ar 29.4 2.1E+02 0.0045 20.2 8.4 16 186-201 41-56 (85)
130 PRK12613 galactose-6-phosphate 29.2 42 0.00092 26.6 2.1 30 126-155 12-41 (141)
131 PF01991 vATP-synt_E: ATP synt 28.5 2.2E+02 0.0047 23.2 6.5 43 175-217 3-45 (198)
132 PHA02571 a-gt.4 hypothetical p 28.3 2.6E+02 0.0057 21.1 10.3 70 176-249 27-96 (109)
133 PRK06569 F0F1 ATP synthase sub 28.3 3.2E+02 0.0069 22.1 10.1 12 185-196 70-81 (155)
134 TIGR03825 FliH_bacil flagellar 27.2 2.1E+02 0.0045 24.9 6.4 10 175-184 57-66 (255)
135 KOG0742 AAA+-type ATPase [Post 27.1 3.6E+02 0.0077 25.9 7.9 8 241-248 255-262 (630)
136 PRK03963 V-type ATP synthase s 26.3 3.7E+02 0.008 22.1 14.3 22 253-274 120-141 (198)
137 PF10056 DUF2293: Uncharacteri 23.1 2.8E+02 0.006 20.0 5.2 45 94-140 39-86 (86)
138 PRK15322 invasion protein OrgB 23.1 2.8E+02 0.006 23.5 5.9 25 176-200 19-43 (210)
139 PF14173 ComGG: ComG operon pr 22.8 1.5E+02 0.0033 21.5 3.9 47 29-75 37-84 (95)
140 KOG2007 Cysteinyl-tRNA synthet 22.8 3.4E+02 0.0074 26.4 7.0 12 136-147 504-515 (586)
141 PTZ00321 ribosomal protein L11 22.3 3.7E+02 0.0081 24.4 6.8 41 107-147 144-195 (342)
142 PRK15354 type III secretion sy 22.2 4.6E+02 0.0099 22.4 6.9 48 173-220 34-81 (224)
143 PRK06328 type III secretion sy 21.4 3.5E+02 0.0076 23.1 6.5 7 243-249 122-128 (223)
144 KOG1772 Vacuolar H+-ATPase V1 21.0 3.7E+02 0.008 20.2 6.6 39 161-199 8-46 (108)
145 PF06635 NolV: Nodulation prot 20.4 2.1E+02 0.0045 24.3 4.7 28 92-119 90-117 (207)
146 PF03780 Asp23: Asp23 family; 20.1 1.6E+02 0.0035 21.5 3.7 16 63-78 57-72 (108)
147 TIGR01120 rpiB ribose 5-phosph 20.1 84 0.0018 25.0 2.2 31 125-155 10-43 (143)
No 1
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=1.9e-54 Score=381.17 Aligned_cols=262 Identities=65% Similarity=0.933 Sum_probs=248.5
Q ss_pred CCeEEEEEecCeeeeEeCCcceeecCCCcceeeEeeeeeEEEeecCCCcccCCCcEEEEeEEEEEEECcchHhhhhcccc
Q 023168 12 QSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCETKTKDNVFVNVVASVQYRALADKAYDAFYKLS 91 (286)
Q Consensus 12 ~g~~~Vv~~fGk~~~v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~ 91 (286)
+|++|||++||+++++++|||||++|| ++++.+.+++|.+.++++.+++|+|++.|+|+++++|||.||.+.+++|++.
T Consensus 1 q~~~~Vv~rfGk~~~~l~pGlhf~~P~-i~~v~~~~~~r~~~~~~~~~~lTkD~~~V~vd~~v~yrI~d~~~~~~~~~~~ 79 (262)
T cd03407 1 QSQVAIIERFGKFFKVAWPGCHFVIPL-VETVAGRLSLRVQQLDVRVETKTKDNVFVTVVGQIQYRVSEENATDAFYKLG 79 (262)
T ss_pred CcEEEEEeecCcccccCCCCeEEEecc-ccceeeEEeeeEEEecCCCceEcCCCCEEEEEEEEEEEECCcHHHHHHHHcC
Confidence 589999999999999999999999999 5776557899999999998899999999999999999999977678899999
Q ss_pred ChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHHHHHHHHHHHHHH
Q 023168 92 NTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLR 171 (286)
Q Consensus 92 ~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~~~Ae~~~ 171 (286)
++...|.+.+++++|+++|++++++++++|++|+..+.+.+++.+++|||.|++|.|++++||+++.++|++++.|++++
T Consensus 80 ~~~~~l~~~~~s~lR~vig~~~l~eil~~R~~I~~~i~~~l~~~l~~~GI~V~~v~I~~i~~p~~v~~A~~~~~~A~~~~ 159 (262)
T cd03407 80 NPEEQIQSYVFDVLRARIPKLTLDELFEQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQR 159 (262)
T ss_pred CHHHHHHHHHHHHHHHHhcCccHHHHHhhHHHHHHHHHHHHHHHHHhcCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhc
Q 023168 172 LAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEIGA 251 (286)
Q Consensus 172 ~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~leal~~~~~ 251 (286)
++.+.+||+++...+.+|+|++++.+++|+|+|+++++.|+|+++++..+.+++++.++++++++++..+|+|+|+++++
T Consensus 160 ~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~e~~~~~~~ 239 (262)
T cd03407 160 VAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQYFDTLKAYGR 239 (262)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998876677888999999999999999997
Q ss_pred cCCCcEEEEcCCCCchhhHHHHHH
Q 023168 252 SSKSSSVFIPHGPGAVKDIATQIR 275 (286)
Q Consensus 252 ~~~~~~i~lp~~~~~~~~~~~~~~ 275 (286)
+++ +++++|.+++++.+++..|+
T Consensus 240 ~~~-kviv~p~~~~~~~~~~~~~~ 262 (262)
T cd03407 240 SSS-TVVFRPHGPGGAQDIYAQIR 262 (262)
T ss_pred CCC-CEEEecCCCccHHHHHHhcC
Confidence 655 89999999999999888763
No 2
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=9e-50 Score=358.49 Aligned_cols=251 Identities=16% Similarity=0.184 Sum_probs=227.0
Q ss_pred cceEEEecCCeEEEEEecCeeee-------EeCCcceeecCCCcceeeEeeeeeEEEeecCC-CcccCCCcEEEEeEEEE
Q 023168 4 TLGCIQVEQSKVVIREQFGKFDH-------VLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQ 75 (286)
Q Consensus 4 ~~~~~~V~~g~~~Vv~~fGk~~~-------v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~ 75 (286)
++||++|++|++||+++||++.+ +++|||||++|| ++++ +.+|+|.+.++.+. .++|+|++.|.|+++++
T Consensus 17 ~~s~~iV~ege~gVV~rFGk~~~~~~~~~~~l~PGLhf~iPf-id~V-~~vdvR~q~~d~~~~~vlT~D~~~V~VD~~V~ 94 (334)
T PRK11029 17 YMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHFKIPF-IETV-KMLDARIQTMDNQADRFVTKEKKDLIVDSYIK 94 (334)
T ss_pred HheEEEECCCeEEEEEECCceeccccccccccCCceEEEcCC-ceEE-EEEeeEEEEeeCCCceEEcCCCCEEEEEEEEE
Confidence 57999999999999999999986 489999999999 6887 48999999999986 89999999999999999
Q ss_pred EEECcchHhhhhccc--cC---hHHHHHHHHHHHHHhHccCCCHHHHHH-hHHHHHHHHHHHHHHH--------------
Q 023168 76 YRALADKAYDAFYKL--SN---TRGQIQAYVFDVIRASVPKLNLDAAFE-QKNEIAKAVEEELEKA-------------- 135 (286)
Q Consensus 76 yrI~d~~~~~~~~~~--~~---~~~~l~~~~~~~lr~vi~~~~~~el~~-~R~~i~~~i~~~l~~~-------------- 135 (286)
|||.|| .++++.. .| +...|.+.+++++|+++|+++++++++ +|.+|..++++.+++.
T Consensus 95 yrI~Dp--~~~~~~~~~~n~~~a~~~l~~~v~salR~viG~~tldei~~~~R~~i~~~v~~~l~~~~~~~~~~~~~~~~~ 172 (334)
T PRK11029 95 WRISDF--SRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSAGTEDEVATPAAD 172 (334)
T ss_pred EEECCH--HHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHcccCHHHHHHhhHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 999994 4554432 23 447788999999999999999999998 7999999999999864
Q ss_pred -------------------------hhccCeEEEEEEEecccCChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 023168 136 -------------------------MSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAE 190 (286)
Q Consensus 136 -------------------------~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Ae 190 (286)
+.+|||+|.+|.|++++||+++.++|+++|.|+|++++.+.+|||++.+..++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GI~V~~V~i~~i~~P~~v~~ai~~~~~Aere~~a~~~~aege~~a~~~~a~ 252 (334)
T PRK11029 173 DAIASAAERVEAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSDAIYNRMRAEREAVARRHRSQGQEEAEKLRAT 252 (334)
T ss_pred cccccchhhcccccccccccccccccccCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhccCCCcEEEEcCCC
Q 023168 191 GEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGP 264 (286)
Q Consensus 191 aeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~leal~~~~~~~~~~~i~lp~~~ 264 (286)
|+.++.++.|+|++++++++|+|+|++++.+++++. .+| .++.+++||++|+++++ ++++++|||.+.
T Consensus 253 A~~e~~~~~AeA~~~a~i~~aegeA~a~~~~~~a~~--~~p---~~~~~~~~lea~~~~~~-~~~~~~vl~~~~ 320 (334)
T PRK11029 253 ADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFS--QDP---DFYAFIRSLRAYENSFS-GNQDVMVLSPDS 320 (334)
T ss_pred HHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCH---HHHHHHHHHHHHHHHhc-CCCcEEEECCCh
Confidence 999999999999999999999999999999999996 233 57888999999999986 345789999885
No 3
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=1.7e-51 Score=344.42 Aligned_cols=281 Identities=41% Similarity=0.586 Sum_probs=256.9
Q ss_pred CCCcceEEE--ecCCeEEEEEecCeeeeEeCCcceeecCCCcceeeEeeeeeEEEeecC-CCcccCCCcEEEEeEEEEEE
Q 023168 1 MGQTLGCIQ--VEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVK-CETKTKDNVFVNVVASVQYR 77 (286)
Q Consensus 1 ~~~~~~~~~--V~~g~~~Vv~~fGk~~~v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~-~~~~T~D~~~v~v~~~v~yr 77 (286)
||-.+||.+ ||+.+++|+.||||+.++++||+||++|+ .+++.+..+++...+..+ .+..|+||+.+.++++++||
T Consensus 1 ~g~~~n~vi~~VpQ~~a~VvER~GkF~~iLePG~~fl~p~-~d~i~~v~~lkeia~~~~~q~aiTkDNV~v~idgvly~r 79 (301)
T KOG2620|consen 1 MGNATNTVIRFVPQQEAAVVERFGKFHRILEPGLHFLPPV-IDKIAYVHSLKEIAILDPKQEAITKDNVFVQIDGVLYYR 79 (301)
T ss_pred CCCcceeeEEeechhHhHHHHHhhhhhhhcCCcceechhh-hhhHHHHHHHHHHhhcccccceeecccEEEEEEEEEEEE
Confidence 566777777 99999999999999999999999999999 578766666655444444 59999999999999999999
Q ss_pred ECcchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHH
Q 023168 78 ALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHV 157 (286)
Q Consensus 78 I~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v 157 (286)
|.||...+++|.++||+.+|.+++++.+|+.+|++++|.++..|+.|+..|.++|++.+..||+++....|+||.||+.+
T Consensus 80 v~dp~~~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~~wG~~clr~eIrDI~pp~~V 159 (301)
T KOG2620|consen 80 VVDPYADDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSV 159 (301)
T ss_pred EecccccccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCHHH
Confidence 99976556999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCC---------
Q 023168 158 KRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGT--------- 228 (286)
Q Consensus 158 ~~ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~--------- 228 (286)
.+||+.+.+|+|.++|++.++||+|+.+|.+|||++++.++..+|.+..++..+.|+++++..++++.++.
T Consensus 160 ~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~~l~ 239 (301)
T KOG2620|consen 160 KRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVMDLK 239 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988876532
Q ss_pred --ChhhhHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCchhhHHHHHHHHHHhhhhh
Q 023168 229 --TSKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGPGAVKDIATQIREGLLQANQV 284 (286)
Q Consensus 229 --~~~~~~~~~l~~~~leal~~~~~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~~~ 284 (286)
++.++++++...+|+.+..++++ .++++|||+++|++++|..+.+.++.++++.
T Consensus 240 ~~~g~~aasl~~a~qyIgaf~~lak--~sntv~lP~~pg~v~~mvaQa~~~~~~~s~~ 295 (301)
T KOG2620|consen 240 QEGGVEAASLFDAEQYIGAFGKLAK--KSNTVFLPHGPGDVRDMVAQALNGYKQLSNA 295 (301)
T ss_pred HhcchhhHHHHHHHHHHHhhhhhcc--cCceEEecCCCCcHHHHHHHHHHHHHhhhcc
Confidence 24566788899999999999974 6789999999999999999999999887653
No 4
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=1.7e-48 Score=359.08 Aligned_cols=249 Identities=19% Similarity=0.250 Sum_probs=224.9
Q ss_pred cceEEEecCCeEEEEEecCeeeeEeCCcceeecCCCcceeeEeeeeeEEEeecC-CCcccCCCcEEEEeEEEEEEECcch
Q 023168 4 TLGCIQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVK-CETKTKDNVFVNVVASVQYRALADK 82 (286)
Q Consensus 4 ~~~~~~V~~g~~~Vv~~fGk~~~v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~-~~~~T~D~~~v~v~~~v~yrI~d~~ 82 (286)
++|||+|++||+|||++||++.++++|||||++|| ++++. .++++.+....+ ..++|+|++.|+|+++|+|||.|
T Consensus 94 ~sg~yiV~e~E~gVV~rFGk~~~~l~PGLhfk~Pf-Id~V~-~vdv~~~~~~~~~~~mLT~D~n~V~Vd~~VqYrI~D-- 169 (419)
T PRK10930 94 ASGFYTIKEAERGVVTRFGKFSHLVEPGLNWKPTF-IDEVK-PVNVEAVRELAASGVMLTSDENVVRVEMNVQYRVTD-- 169 (419)
T ss_pred HheEEEECCCeEEEEEECCcCcceeCCceEEecCc-eEEEE-EEEeEEEEEccCcceeECCCCCEEEEEEEEEEEECC--
Confidence 57999999999999999999999999999999999 58874 788776554333 48999999999999999999999
Q ss_pred HhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHH-hHHHHHHHHHHHHHHHhhcc--CeEEEEEEEecccCChHHHH
Q 023168 83 AYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFE-QKNEIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDVHVKR 159 (286)
Q Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~-~R~~i~~~i~~~l~~~~~~~--Gi~V~~v~I~~i~~p~~v~~ 159 (286)
+.+++|++.+++..|.+.++++||+++|+++++++++ +|++|...+++.|++.+++| ||+|.+|.|++++||+++.+
T Consensus 170 p~~~lf~v~~~~~~L~~~~~SAlR~vIG~~tldevLt~~R~~I~~~i~~~l~e~l~~y~~GI~V~~V~I~di~pP~eV~~ 249 (419)
T PRK10930 170 PEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKA 249 (419)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHccCCHHHHhhccHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEeecCCCHHHHH
Confidence 5678899999999999999999999999999999999 69999999999999999997 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHH
Q 023168 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLV 239 (286)
Q Consensus 160 ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~ 239 (286)
||++++.|++++++.+.+||++++..+.+|++++++.+.+|+|++++.+++|+|+++++..+..+|. .+|+.++ .
T Consensus 250 Af~~v~~Are~~~~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~--kaP~vtr---~ 324 (419)
T PRK10930 250 AFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYK--AAPEITR---E 324 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh--hCHHHHH---H
Confidence 9999999999999999999999999999999999999999999999999999999999888888886 4566554 4
Q ss_pred HHHHHHHHHHhccCCCcEEEEcCC
Q 023168 240 TQYFDTMKEIGASSKSSSVFIPHG 263 (286)
Q Consensus 240 ~~~leal~~~~~~~~~~~i~lp~~ 263 (286)
..|||+|++++. +.+.++++.+
T Consensus 325 RlYletme~vl~--~~~kvivd~~ 346 (419)
T PRK10930 325 RLYIETMEKVLG--HTRKVLVNDK 346 (419)
T ss_pred HHHHHHHHHHHc--cCCEEEEeCC
Confidence 569999999995 3444556554
No 5
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=100.00 E-value=5.5e-48 Score=340.30 Aligned_cols=249 Identities=18% Similarity=0.236 Sum_probs=226.1
Q ss_pred EEEecCCeEEEEEecCeeeeEeCCcceeecCCCcceeeEeeeeeEEEeecCC-CcccCCCcEEEEeEEEEEEECcchHhh
Q 023168 7 CIQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAYD 85 (286)
Q Consensus 7 ~~~V~~g~~~Vv~~fGk~~~v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~d~~~~~ 85 (286)
+|+|+||++||+++||++.++++||+||++|| ++++ +.++++.+....+. .++|+|++.|.++++++|||.| +.+
T Consensus 1 ~~iV~~ge~~Vv~~fGk~~~~l~pGl~~~~P~-i~~v-~~~~~~~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~d--~~~ 76 (261)
T TIGR01933 1 IYTIGEAERGVVLRFGKYHRTVDPGLNWKPPF-IEEV-YPVNVTAVRNLRKQGLMLTGDENIVNVEMNVQYRITD--PYK 76 (261)
T ss_pred CEEeCCCeEEEEEEcCccccccCCcceEECCC-ceEE-EEeeeEEEEecCCcCeEEeCCCCEEEEEEEEEEEECC--HHH
Confidence 58999999999999999999999999999999 5777 57888754422233 6899999999999999999998 567
Q ss_pred hhccccChHHHHHHHHHHHHHhHccCCCHHHHHH-hHHHHHHHHHHHHHHHhhcc--CeEEEEEEEecccCChHHHHHHH
Q 023168 86 AFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFE-QKNEIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDVHVKRAMN 162 (286)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~-~R~~i~~~i~~~l~~~~~~~--Gi~V~~v~I~~i~~p~~v~~ai~ 162 (286)
++|++.+++..|.+.+++++|+++|+++++++++ +|++|...+.+.+++.++.| ||+|++|.|++++||+++.++|+
T Consensus 77 ~~~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~ 156 (261)
T TIGR01933 77 YLFSVENPEDSLRQATDSALRGVIGDSTMDDILTEGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFD 156 (261)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHH
Confidence 8889999999999999999999999999999999 89999999999999999976 99999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHH
Q 023168 163 EINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQY 242 (286)
Q Consensus 163 ~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~ 242 (286)
+++.|++++++.+.+||++++..+.+|++++++.+++|+|+++++.++|+|+++++..+++++. .+| +++.+++|
T Consensus 157 ~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay~--~~p---~~~~~~~~ 231 (261)
T TIGR01933 157 DVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYK--KAP---DVTRERLY 231 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hCh---HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 334 46677889
Q ss_pred HHHHHHHhccCCCcEEEEcCCCC
Q 023168 243 FDTMKEIGASSKSSSVFIPHGPG 265 (286)
Q Consensus 243 leal~~~~~~~~~~~i~lp~~~~ 265 (286)
||+|+++++ +++++++++.+++
T Consensus 232 le~~~~~~~-~~~~~~~~~~~~~ 253 (261)
T TIGR01933 232 LETMEKVLS-NTRKVLLDDKKGN 253 (261)
T ss_pred HHHHHHHHc-cCCeEEEECCCCC
Confidence 999999985 4567888887753
No 6
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=100.00 E-value=1.5e-47 Score=345.01 Aligned_cols=251 Identities=13% Similarity=0.144 Sum_probs=224.9
Q ss_pred cceEEEecCCeEEEEEecCeeeeEe-------CCcceeecCCCcceeeEeeeeeEEEeecCC-CcccCCCcEEEEeEEEE
Q 023168 4 TLGCIQVEQSKVVIREQFGKFDHVL-------EPGCQCLPWCLGYKVAGRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQ 75 (286)
Q Consensus 4 ~~~~~~V~~g~~~Vv~~fGk~~~v~-------~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~ 75 (286)
++||++|++|++||+++||++.++. +||+||++|| ++++ +.+|+|.+.++.+. .+.|+|+++|.|+++++
T Consensus 17 ~~~~~iV~~ge~gVv~~fGk~~~~~~~~~~v~~pGlhf~~P~-i~~v-~~vd~r~q~~~~~~~~vlTkD~~~V~Vd~~V~ 94 (317)
T TIGR01932 17 FQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPF-IEHV-KIFDAKIQTMDGRPDRIPTKEKKDIIIDTYIR 94 (317)
T ss_pred HheEEEECCCeEEEEEecCceeccccccccccCCCeEEEecc-ccEE-EEeeeeEEEecCCcceeECCCCCEEEEEEEEE
Confidence 5799999999999999999998654 7999999999 5787 48999999999876 89999999999999999
Q ss_pred EEECcchHhhhhcccc--C---hHHHHHHHHHHHHHhHccCCCHHHHHH-hHHHH-------------------------
Q 023168 76 YRALADKAYDAFYKLS--N---TRGQIQAYVFDVIRASVPKLNLDAAFE-QKNEI------------------------- 124 (286)
Q Consensus 76 yrI~d~~~~~~~~~~~--~---~~~~l~~~~~~~lr~vi~~~~~~el~~-~R~~i------------------------- 124 (286)
|||.| +.++++++. + ++..|.+.+++++|+++|+++++++++ .|++|
T Consensus 95 yrV~d--~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~vig~~tl~eil~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (317)
T TIGR01932 95 WRIED--FKKYYLSTGGGTISAAEVLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKG 172 (317)
T ss_pred EEECC--HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHccCcHHHHHhcchHHhhhhhchhhccccccccccccccchh
Confidence 99998 456666543 3 467799999999999999999999998 46655
Q ss_pred ----HHHHHHHHHHHhhccCeEEEEEEEecccCChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhc
Q 023168 125 ----AKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSG 200 (286)
Q Consensus 125 ----~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~A 200 (286)
...+.+.+.+.+.+|||+|++|.|++++||+++.++|++++.|+|+++|...+++|++.+..++|+|++++.++.|
T Consensus 173 r~~l~~~i~~~~~~~~~~~Gi~V~~V~I~~i~~p~~v~~Ai~~~~~aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~a 252 (317)
T TIGR01932 173 REILAREISQIANSQLKDIGIEVVDVRIKKINYSDELSESIYNRMRSEREQIARMHRSQGEEKAEEILGKAEYEVRKILS 252 (317)
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhccCCCcEEEEcCCC
Q 023168 201 LGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEIGASSKSSSVFIPHGP 264 (286)
Q Consensus 201 ea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~leal~~~~~~~~~~~i~lp~~~ 264 (286)
+|++++.+++|+|++++++.++++|. .+| .++.+++|||+|+++++ ++++++++|.++
T Consensus 253 eA~a~a~~~~Aegea~a~~~~~~a~~--~~p---~~~~~~~~le~~~~~~~-~~~~~~vl~~~~ 310 (317)
T TIGR01932 253 EAYRTARIIKGEGDAEAAKIYSDAYG--KDP---EFYSFWRSLEAYEKSFK-DNQDEKVLSTDS 310 (317)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHc--cCH---HHHHHHHHHHHHHHHhC-CCCCEEEECCCc
Confidence 99999999999999999999999986 334 46667899999999986 356689999884
No 7
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=1.1e-46 Score=328.53 Aligned_cols=234 Identities=18% Similarity=0.217 Sum_probs=215.0
Q ss_pred EEEecCCeEEEEEecCeeee-EeCCcceeecCCCcceeeEeeeeeEEEeecCC-CcccCCCcEEEEeEEEEEEECcchHh
Q 023168 7 CIQVEQSKVVIREQFGKFDH-VLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAY 84 (286)
Q Consensus 7 ~~~V~~g~~~Vv~~fGk~~~-v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~d~~~~ 84 (286)
||+|++|++||+++||++.+ +++||+||++|| ++++ +.+|++.+.++.+. ++.|+|++.|++++++.|||.|| .
T Consensus 1 ~~iV~~ge~~Vv~~~Gk~~~~~~~pG~~~~~P~-i~~v-~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~--~ 76 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPF-IQQV-KKFDKRILTLDSDPQRVLTKDKKRLIVDAYAKWRITDP--L 76 (242)
T ss_pred CEEeCCCeEEEEEEcCccccccCCCCeeEEcCC-cceE-EEEcCEEEeccCCcceEEccCCcEEEEEEEEEEEEcCH--H
Confidence 68999999999999999987 689999999999 4666 58999999988765 89999999999999999999984 4
Q ss_pred hhhccccChH----HHHHHHHHHHHHhHccCCCHHHHHHh-HHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHH
Q 023168 85 DAFYKLSNTR----GQIQAYVFDVIRASVPKLNLDAAFEQ-KNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKR 159 (286)
Q Consensus 85 ~~~~~~~~~~----~~l~~~~~~~lr~vi~~~~~~el~~~-R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ 159 (286)
++++++.++. ..|.+.+++++|+++|++++++++++ |++|.+.+++.|++.+++|||+|.+|.|++|+||+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~i~~ 156 (242)
T cd03405 77 RFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSE 156 (242)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHHHHHHHccCcEEEEEEEEeccCCHHHHH
Confidence 6666655443 68899999999999999999999996 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHH
Q 023168 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLV 239 (286)
Q Consensus 160 ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~ 239 (286)
+|++++.|+|++.+++.+|+|++++.+++|++++++.++.|+|+|++.+++|+|++++++.+++++. .+| .++.+
T Consensus 157 ai~~~~~ae~~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~~~~~a~~--~~p---~~~~~ 231 (242)
T cd03405 157 SVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYG--KDP---EFYAF 231 (242)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc--CCH---HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 345 46777
Q ss_pred HHHHHHHHHH
Q 023168 240 TQYFDTMKEI 249 (286)
Q Consensus 240 ~~~leal~~~ 249 (286)
+++|++|+.+
T Consensus 232 ~~~l~~~~~~ 241 (242)
T cd03405 232 YRSLEAYRNS 241 (242)
T ss_pred HHHHHHHHhh
Confidence 8999999875
No 8
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=1.5e-45 Score=325.69 Aligned_cols=239 Identities=24% Similarity=0.304 Sum_probs=213.2
Q ss_pred cceEEEecCCeEEEEEecCeeeeEeCCcceeecCCCcceeeEeeeeeEE----------Eee-c--CCCcccCCCcEEEE
Q 023168 4 TLGCIQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQ----------QLD-V--KCETKTKDNVFVNV 70 (286)
Q Consensus 4 ~~~~~~V~~g~~~Vv~~fGk~~~v~~pGlh~~~P~~~~~v~~~v~~r~~----------~~~-~--~~~~~T~D~~~v~v 70 (286)
++||++|+||++||+++||+++++++||+||++||+ +++.+.++++.+ ... . +..+.|+|++.|.+
T Consensus 12 ~~s~~~V~~ge~gVV~~fGk~~~~~~pGlh~~~P~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~T~D~~~v~v 90 (266)
T cd03404 12 LSGFYIVQPGERGVVLRFGKYSRTVEPGLHWKLPYP-IEVVEVVPVFQLRSVGIPVRVGSVRSVPGESLMLTGDENIVDV 90 (266)
T ss_pred HcEEEEECCCceEEeEEcCccccccCCceeEecCCC-cEEEEEecceeEEeeccccccccccCCCcccceEeCCCCEEEE
Confidence 578999999999999999999999999999999995 554334433211 111 1 12789999999999
Q ss_pred eEEEEEEECcchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHh-HHHHHHHHHHHHHHHhhcc--CeEEEEEE
Q 023168 71 VASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQ-KNEIAKAVEEELEKAMSHY--GYEIVQTL 147 (286)
Q Consensus 71 ~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~-R~~i~~~i~~~l~~~~~~~--Gi~V~~v~ 147 (286)
++++.|||.|| .+++|...+++..|.+.+++++|+++|++++++++++ |+++.+.|++.+++.++.| ||+|.+|.
T Consensus 91 d~~v~yrI~d~--~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~ 168 (266)
T cd03404 91 EFAVQYRISDP--YDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVN 168 (266)
T ss_pred EEEEEEEECCH--HHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEE
Confidence 99999999994 5678888999999999999999999999999999996 9999999999999999976 99999999
Q ss_pred EecccCChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 023168 148 IVDIEPDVHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPG 227 (286)
Q Consensus 148 I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~ 227 (286)
|++++||+++.++|++++.|++++++.+.+|++++++.+..|+++|++.++.|+|++++..++|+|++++++.++.++..
T Consensus 169 i~~i~~p~~i~~a~~~~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~ 248 (266)
T cd03404 169 LQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKK 248 (266)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred CChhhhHHHHHHHHHHHHHHHHh
Q 023168 228 TTSKDVMDMVLVTQYFDTMKEIG 250 (286)
Q Consensus 228 ~~~~~~~~~~l~~~~leal~~~~ 250 (286)
+|+ .++++.|+++|.+++
T Consensus 249 --~~~---~~~~~~~~~~~~~~~ 266 (266)
T cd03404 249 --APD---VTRERLYLETMEEVL 266 (266)
T ss_pred --ChH---HHHHHHHHHHHHHhC
Confidence 454 455677999999874
No 9
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-41 Score=304.28 Aligned_cols=257 Identities=29% Similarity=0.389 Sum_probs=230.6
Q ss_pred cceEEEecCCeEEEEEecCeeeeEeC-CcceeecCCCc--ceeeEeeeeeEEEeec-CC-CcccCCCcEEEEeEEEEEEE
Q 023168 4 TLGCIQVEQSKVVIREQFGKFDHVLE-PGCQCLPWCLG--YKVAGRLSLRVQQLDV-KC-ETKTKDNVFVNVVASVQYRA 78 (286)
Q Consensus 4 ~~~~~~V~~g~~~Vv~~fGk~~~v~~-pGlh~~~P~~~--~~v~~~v~~r~~~~~~-~~-~~~T~D~~~v~v~~~v~yrI 78 (286)
++++++|++++.+++++||++.++++ ||+||++||+. ..+...++.+.++++. +. .+.|+|++.|.+|++++|||
T Consensus 18 ~~~~~~v~~~~~~vv~r~G~~~~~~~~pGl~f~iP~~~~~~~~~~~~~~~~~~~d~~~~q~viT~D~~~V~vd~~v~~rv 97 (291)
T COG0330 18 FSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRV 97 (291)
T ss_pred HceeEEEcCCceEEEEEecceeeecCCCceEEEcCCccceeeeeeeeeeEEEEeccCCcceEEecCCCEEEEEEEEEEEE
Confidence 46799999999999999999999998 99999999931 2222467888999999 55 89999999999999999999
Q ss_pred CcchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHhHH-HHHHHHHHHHHHHhhccCeEEEEEEEecccCChHH
Q 023168 79 LADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKN-EIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHV 157 (286)
Q Consensus 79 ~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~-~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v 157 (286)
.| +.++++.+.+++..+.+.+++.+|+++|+++++++++.|. .++..+.+.|++.+++|||.|.+|.|++++||+++
T Consensus 98 ~d--~~~~~~~v~~~~~~l~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V~~V~i~~i~~p~ev 175 (291)
T COG0330 98 TD--PQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEV 175 (291)
T ss_pred cC--HHHHHHhcCCHHHHHHHHHHHHHHHHHccccHHHHhhCchHHHHHHHHHHHHHhhhhcCcEEEEEEEeecCCCHHH
Confidence 99 4588899999999999999999999999999999999777 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHH
Q 023168 158 KRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMV 237 (286)
Q Consensus 158 ~~ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~ 237 (286)
..+|.+++.|++++++.+.+||+++++.+.+|+|++++.++.|+|++++ +..++|++++++.+.+++.+ .+..+++
T Consensus 176 ~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~~~~~~~~~---~~~~~~~ 251 (291)
T COG0330 176 QAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAKIIAAALRE---APAAPQA 251 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-HHHHhhccHHHHHHHhhccc---ccchhHH
Confidence 9999999999999999999999999999999999999999999999998 55556666577888888763 2334788
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEcCCCCc
Q 023168 238 LVTQYFDTMKEIGASSKSSSVFIPHGPGA 266 (286)
Q Consensus 238 l~~~~leal~~~~~~~~~~~i~lp~~~~~ 266 (286)
.+++|++++.+...+++++++++|.+.++
T Consensus 252 ~~~r~~~~~~~~~~~~~~~~v~~p~~~~~ 280 (291)
T COG0330 252 LAQRYLEELLEIALAGNSKVVVVPNSAGG 280 (291)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEecCCccc
Confidence 99999999999998777888999987655
No 10
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=1.8e-40 Score=284.39 Aligned_cols=213 Identities=29% Similarity=0.356 Sum_probs=180.9
Q ss_pred ecCCeEEEEEecCeeeeEeCCcceeecCCCcceeeEeeeeeEEEeecCC-CcccCCCcEEEEeEEEEEEECcchHhhhhc
Q 023168 10 VEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAYDAFY 88 (286)
Q Consensus 10 V~~g~~~Vv~~fGk~~~v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~ 88 (286)
|++||+||+++||++.++++||+||++|| ++++.+.+|+|.+.++++. ++.|+|++++.+++++.|||.| +.++++
T Consensus 1 V~~ge~~Vv~~~G~~~~~~~pG~~f~~P~-~~~v~~~v~~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d--~~~~~~ 77 (215)
T cd03403 1 VPQYERGVVERLGKYHRTLGPGLHFIIPF-IDRIAYKVDLREQVLDVPPQEVITKDNVTVRVDAVLYYRVVD--PVKAVY 77 (215)
T ss_pred CCcceEEEEEEcCcCccccCCcEEEEecc-ceEEEEEEeeEEEEEccCCceeEcCCCCEEEEEEEEEEEEec--HHHHHh
Confidence 78999999999999999999999999999 5776348999999999976 7999999999999999999998 456788
Q ss_pred cccChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHHHHHHHHHHH
Q 023168 89 KLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAA 168 (286)
Q Consensus 89 ~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~~~Ae 168 (286)
...|++..+.+.+++++|+++|++++++++++|+++.+.+++.|++.+.+|||+|.+|.|++++||+++.++|++++.|+
T Consensus 78 ~~~~~~~~l~~~~~~~lr~~i~~~~~~el~~~R~~i~~~i~~~l~~~l~~~Gi~v~~v~i~~i~~p~~~~~ai~~~~~A~ 157 (215)
T cd03403 78 GVEDYRYAISQLAQTTLRSVIGKMELDELLSEREEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAE 157 (215)
T ss_pred cCCCHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHHHHHHHHHHhccCeEEEEEEEeeecCCHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHH
Q 023168 169 RLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKE 248 (286)
Q Consensus 169 ~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~leal~~ 248 (286)
+++++.+.+|+|++.+.+++|+|+++... + ..++.++++|+++.
T Consensus 158 ~~~~a~i~~A~ge~~a~~~~aea~~~~~~--------------------------------~----~~~~~~~~~e~~~~ 201 (215)
T cd03403 158 REKRAKIIEAEGERQAAILLAEAAKQAAI--------------------------------N----PAALQLRELETLEE 201 (215)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHcc--------------------------------C----HHHHHHHHHHHHHH
Confidence 87766555544444444333333333221 0 24567889999999
Q ss_pred HhccCCCcEEEEc
Q 023168 249 IGASSKSSSVFIP 261 (286)
Q Consensus 249 ~~~~~~~~~i~lp 261 (286)
++++++.++++.|
T Consensus 202 ~~~~~~~~~~~~~ 214 (215)
T cd03403 202 IAKEAASTVVFPA 214 (215)
T ss_pred HHhccCCeEEeeC
Confidence 9987766555544
No 11
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=2.4e-37 Score=271.82 Aligned_cols=194 Identities=17% Similarity=0.184 Sum_probs=169.7
Q ss_pred cceEEEecCCeEEEEEecCeee-eEeCCcceeecCCCcceeeEeeeeeEEEeecCC-CcccCCCcEEEEeEE-EEEEECc
Q 023168 4 TLGCIQVEQSKVVIREQFGKFD-HVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKC-ETKTKDNVFVNVVAS-VQYRALA 80 (286)
Q Consensus 4 ~~~~~~V~~g~~~Vv~~fGk~~-~v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~-v~yrI~d 80 (286)
++|+++|++|++||++|||++. .+++|||||++|| ++++. .++++.++.+.+. .+.|+||+.|.++.. +.|++++
T Consensus 2 ~ssv~iV~ege~gVV~RfGkv~~~~l~PGLHfkiPf-Id~V~-~v~vrlq~~~~~~~~v~TkDg~~ItvD~i~v~~ivdp 79 (280)
T cd03406 2 SSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPF-ITTYK-SVQVTLQTDEVKNVPCGTSGGVMIYFDRIEVVNFLIP 79 (280)
T ss_pred CceEEEECCCeEEEEEECCcccccccCCceEEecCC-ceEEE-EEEeEEEEeccCCcccccCCCcEEEEEEEEEEEecCH
Confidence 5789999999999999999985 5789999999999 58774 6888988888764 889999999999965 5555543
Q ss_pred chHhhhh--ccccChHHHHHHHHHHHHHhHccCCCHHHHHH-hHHHHHHHHHHHHHHHhhcc--CeEEEEEEEecccCCh
Q 023168 81 DKAYDAF--YKLSNTRGQIQAYVFDVIRASVPKLNLDAAFE-QKNEIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDV 155 (286)
Q Consensus 81 ~~~~~~~--~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~-~R~~i~~~i~~~l~~~~~~~--Gi~V~~v~I~~i~~p~ 155 (286)
..++..+ |...+....|.+.+++++|+++|+++++++++ +|+++...+++.+++.+++| ||+|.+|.|++++||+
T Consensus 80 ~~~~~~~~~y~~~~~~~~I~~~Vrsavr~vig~~tldeVis~~Rd~I~~~I~~~l~e~l~~y~~GI~I~dV~I~~id~P~ 159 (280)
T cd03406 80 DSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRVTKPKIPE 159 (280)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHhhhCCHHHHHhccHHHHHHHHHHHHHHHHhccCCCcEEEEEEEEecCCCH
Confidence 3333333 34556788999999999999999999999999 89999999999999999988 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHhhHHHHHHHhc
Q 023168 156 HVKRAMNEINAAARLRL--------AANEKAEAEKILQIKRAEGEAEAKYLSG 200 (286)
Q Consensus 156 ~v~~ai~~~~~Ae~~~~--------a~~~~Ae~e~~~~i~~Aeaeaea~~~~A 200 (286)
++.++| ++|.|||++. +.+.+||+++.+.+..|+++|+-+++.=
T Consensus 160 ~V~~af-erM~aER~k~~~~~~~~~~~~~~ae~~~~~~~~~a~~~~~~~~~~~ 211 (280)
T cd03406 160 AIRRNY-ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILF 211 (280)
T ss_pred HHHHHH-HHHHHHHHhhhhccchhHHHHHHhhHHHHHHHHHHHHHhhHHHHHH
Confidence 999998 7999999999 9999999999999999999988776543
No 12
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=2e-37 Score=261.85 Aligned_cols=190 Identities=17% Similarity=0.189 Sum_probs=159.7
Q ss_pred eEEEecCCeEEEEEecCeeee--EeCCcceeecCCCcceeeEeeeeeEEEeecCCCcccCCCcEEEEeEEEEEEECcchH
Q 023168 6 GCIQVEQSKVVIREQFGKFDH--VLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCETKTKDNVFVNVVASVQYRALADKA 83 (286)
Q Consensus 6 ~~~~V~~g~~~Vv~~fGk~~~--v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~ 83 (286)
||++|++|++||+++||+... +++||+||++|| ++++ +.+|++.+.++++..+.|+|++.|++++.++|++.++++
T Consensus 1 ~~~~V~~g~~gVv~~~g~~~~~~~~~pG~h~~~P~-~~~v-~~~~~r~~~~~~~~~~~t~d~~~V~v~~~v~y~v~~~~~ 78 (196)
T cd03401 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPW-FQKP-IIFDVRARPRNIESTTGSKDLQMVNITLRVLFRPDASQL 78 (196)
T ss_pred CEEEECCCcEEEEEEecCccccCccCCceEEEccc-ccee-EEEEeeeeEEEEeecccCCCCeEEEEEEEEEEEeCHHHH
Confidence 589999999999999998654 899999999999 5777 489999999988888999999999999999999975433
Q ss_pred hhhh--ccccChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHHHH
Q 023168 84 YDAF--YKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAM 161 (286)
Q Consensus 84 ~~~~--~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai 161 (286)
...+ +..+..+..|.+.+++.+|+++|+|+++|++++|++|+..|.+.+++.+.+|||.|++|.|++|+||+++.++|
T Consensus 79 ~~~~~~~~~~~~~~~i~~~v~~~lR~vi~~~~~~ei~~~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~~p~~~~~ai 158 (196)
T cd03401 79 PRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELITQREEVSALIREALTERAKDFGIILDDVSITHLTFSKEFTKAV 158 (196)
T ss_pred HHHHHHhCcchHhhhhcHHHHHHHHHHHccCCHHHHHhhHHHHHHHHHHHHHHHHHhCCeEEEEEEEEeccCCHHHHHHH
Confidence 3222 22223456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHH
Q 023168 162 NEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIAR 205 (286)
Q Consensus 162 ~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~ 205 (286)
++++.|+++.+++. ..+.+|++++++.+++|+|+|+
T Consensus 159 ~~k~~a~q~~~~a~--------~~~~~a~~ea~~~~~~A~gea~ 194 (196)
T cd03401 159 EAKQVAQQEAERAK--------FVVEKAEQEKQAAVIRAEGEAE 194 (196)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhhh
Confidence 99999998765422 2334566666666666665554
No 13
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=2e-36 Score=258.64 Aligned_cols=170 Identities=17% Similarity=0.284 Sum_probs=158.4
Q ss_pred eEEEecCCeEEEEEecCeeeeEe-CCcceeecCCCcceeeEeeeeeEEEeecCC-CcccCCCcEEEEeEEEEEEECcchH
Q 023168 6 GCIQVEQSKVVIREQFGKFDHVL-EPGCQCLPWCLGYKVAGRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKA 83 (286)
Q Consensus 6 ~~~~V~~g~~~Vv~~fGk~~~v~-~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~d~~~ 83 (286)
|||+|+|||+||+++||++.++. +|||||++||+ +.. .+|+|.+.++.+. .+.|+|++++.++++++|||.| +
T Consensus 1 g~~iV~~ge~~Vv~rfGk~~~t~~~pGL~~~~P~~-~~~--~vd~R~~~~~~~~~~v~T~D~~~v~V~~~V~~rV~D--p 75 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFS-SKK--RVSLRVRNFESEKLKVNDANGNPIEIAAVIVWRVVD--T 75 (219)
T ss_pred CeEEECCCeeEEEEEcCcCcccccCCceEEEeccc-eEE--EEeeEEEEecCCCceeEcCCCCEEEEEEEEEEEEcC--H
Confidence 68999999999999999999865 99999999994 653 7999999999887 7999999999999999999999 5
Q ss_pred hhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHH-------hHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChH
Q 023168 84 YDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFE-------QKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVH 156 (286)
Q Consensus 84 ~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~-------~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~ 156 (286)
.+++|++.|++..|...+++++|+++|+++++++++ +|++|+.++++.+++.++.|||+|.+|.|+++.||++
T Consensus 76 ~ka~~~v~~~~~~l~~~~~salR~vig~~~~d~il~~~~~l~~~r~~I~~~l~~~l~~~l~~~GI~V~~v~I~~l~~p~e 155 (219)
T cd03402 76 AKAVFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPE 155 (219)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHccCcHHHHhccccccccCHHHHHHHHHHHHHHHHHhhCcEEEEEEEEeecCCHH
Confidence 688999999999999999999999999999999985 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 023168 157 VKRAMNEINAAARLRLAANEKAEA 180 (286)
Q Consensus 157 v~~ai~~~~~Ae~~~~a~~~~Ae~ 180 (286)
+.+||.++|+|+++..|....++|
T Consensus 156 i~~am~~R~~Ae~~~~Ar~~~~~G 179 (219)
T cd03402 156 IAQAMLQRQQASAIIAARRKIVEG 179 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999988887766665
No 14
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=100.00 E-value=6.8e-35 Score=247.55 Aligned_cols=221 Identities=23% Similarity=0.277 Sum_probs=184.6
Q ss_pred CcceEEEecCCeEEEEEecCeeee--EeCCcceeecCCCcceeeEeeeeeEEEeecCC-CcccCCCcEEEEeEEEEEEEC
Q 023168 3 QTLGCIQVEQSKVVIREQFGKFDH--VLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRAL 79 (286)
Q Consensus 3 ~~~~~~~V~~g~~~Vv~~fGk~~~--v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~ 79 (286)
.|+|+.+|++.|++|++|+|+... ..|||+.|++|+ +++. +++|+|++++++|+ +++|+|.+.++|++.++|||.
T Consensus 51 ~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPC-IDt~-~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~ 128 (288)
T KOG2621|consen 51 IWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPC-IDTF-RKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRIS 128 (288)
T ss_pred HHHHHHhhHHHhhhhheeeeeccccCCCCCCeEEEecc-ccee-eeeeeeEEeecCCHHHHhcccceEEEeceEEEEEec
Confidence 478999999999999999999875 679999999999 5887 59999999999998 999999999999999999999
Q ss_pred cchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHH
Q 023168 80 ADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKR 159 (286)
Q Consensus 80 d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ 159 (286)
| |...+.++.|.....+-++++.+|+++|+.++.|++++|+.|..++...|++....|||+|++|.|+||++|.+.+.
T Consensus 129 d--pi~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~r~~is~~~~~~Ld~~T~~WGvkVeRVEikDvrlp~qlqr 206 (288)
T KOG2621|consen 129 D--PIIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSSREVIAQEAQKALDEATEPWGVKVERVEIKDVRLPAQLQR 206 (288)
T ss_pred C--HHHHHHhccCHHHHHHHHHHHHHHHHHccCcHHHHHHhHHHHHHHHHHHhhhcccccceEEEEEEEeeeechHhhhh
Confidence 9 56788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHH
Q 023168 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLV 239 (286)
Q Consensus 160 ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~ 239 (286)
+|.....|.|+.+|++..||||+.+ .. +.+++...+ . .+ +..++
T Consensus 207 amaaeAeA~reA~Akviaaege~~a-----------s~---------------al~~aa~v~----~--~s----p~alq 250 (288)
T KOG2621|consen 207 AMAAEAEATREARAKVIAAEGEKKA-----------SE---------------ALKEAADVI----S--ES----PIALQ 250 (288)
T ss_pred hhhchhhhhhhhhhhHHHHHhhhHH-----------HH---------------HHHHhhccc----c--CC----chhhh
Confidence 8886555555555444444443322 11 111121111 1 12 35677
Q ss_pred HHHHHHHHHHhccCCCcEEEEcCCC
Q 023168 240 TQYFDTMKEIGASSKSSSVFIPHGP 264 (286)
Q Consensus 240 ~~~leal~~~~~~~~~~~i~lp~~~ 264 (286)
+|||++|..++. .+++++++|.+.
T Consensus 251 LryLqtl~sia~-e~~~tivfP~p~ 274 (288)
T KOG2621|consen 251 LRYLQTLNSIAA-EKNSTIVFPLPI 274 (288)
T ss_pred hhhhhcchhhhc-CCCCCcccCCCH
Confidence 999999999975 578899999763
No 15
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.98 E-value=3.8e-31 Score=215.85 Aligned_cols=156 Identities=29% Similarity=0.391 Sum_probs=144.8
Q ss_pred ceEEEecCCeEEEEEecCeeeeEeCCcceeecCCCcceeeEeeeeeEEEeecCC-CcccCCCcEEEEeEEEEEEECcchH
Q 023168 5 LGCIQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKA 83 (286)
Q Consensus 5 ~~~~~V~~g~~~Vv~~fGk~~~v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~d~~~ 83 (286)
+||++|++|++||+++||++.++++||+||++|| .+++ +.++++.+.++.+. .+.|+|++++.+++++.|||.||
T Consensus 1 ~~~~~V~~g~~~v~~~~G~~~~~~~pG~~~~~P~-~~~~-~~~~~~~~~~~~~~~~~~t~d~~~v~v~~~v~~rv~d~-- 76 (160)
T smart00244 1 AAIKVVGEGEAGVVERLGRVLRVLGPGLHFLIPF-IDRV-KKVDLRAQTDDVPPQEIITKDNVKVSVDAVVYYRVLDP-- 76 (160)
T ss_pred CcEEEEcccEEEEEEecCccccccCCCEEEEecc-eeEE-EEEeeEEEeecCCceEEEecCCcEEEEeEEEEEEEccH--
Confidence 4799999999999999999999999999999999 5776 48999999998876 88999999999999999999995
Q ss_pred hhhhccccChH-HHHHHHHHHHHHhHccCCCHHHHHH-hHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHHHH
Q 023168 84 YDAFYKLSNTR-GQIQAYVFDVIRASVPKLNLDAAFE-QKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAM 161 (286)
Q Consensus 84 ~~~~~~~~~~~-~~l~~~~~~~lr~vi~~~~~~el~~-~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai 161 (286)
.++++...+++ ..|.+.+++++|+++++++++++++ +|+++.+.+++.+++.+++||++|.+|.|+++++|+++.++|
T Consensus 77 ~~~~~~~~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~~~~Gi~i~~v~i~~i~~p~~i~~ai 156 (160)
T smart00244 77 LKAVYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAWGIEVEDVEIKDIRLPEEIQEAM 156 (160)
T ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHHHhCCCEEEEEEEEecCCCHHHHHHH
Confidence 45777777877 5999999999999999999999999 799999999999999999999999999999999999999999
Q ss_pred HHH
Q 023168 162 NEI 164 (286)
Q Consensus 162 ~~~ 164 (286)
+++
T Consensus 157 ~~k 159 (160)
T smart00244 157 EQQ 159 (160)
T ss_pred Hhh
Confidence 865
No 16
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=99.97 E-value=1.9e-31 Score=221.46 Aligned_cols=170 Identities=30% Similarity=0.403 Sum_probs=116.2
Q ss_pred EEecCCeEEEEEecCeeeeEeCCcceeecCCCcceeeEeeeeeEEEeecCC---CcccCCCcEEEEeEEEEEEECcchHh
Q 023168 8 IQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKC---ETKTKDNVFVNVVASVQYRALADKAY 84 (286)
Q Consensus 8 ~~V~~g~~~Vv~~fGk~~~v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~---~~~T~D~~~v~v~~~v~yrI~d~~~~ 84 (286)
|+|++|++||+++||++..+++||+||++|| .+++ +.++++.++++++. .+.|+|+.++.+++++.|||.+ +.
T Consensus 1 ~~V~~g~~~V~~~~G~~~~~~~~G~~~~~P~-~~~~-~~~~~~~~~~~~~~~~~~~~t~D~~~v~v~~~v~y~i~~--~~ 76 (179)
T PF01145_consen 1 YTVPPGEVGVVVRFGKVKDVLGPGLHFVIPF-IQKV-YVYPTRVQTIEFTREPITVRTKDGVPVDVDVTVTYRIED--PP 76 (179)
T ss_dssp --------------------------------EEE---S--SS-EEEEEEE--EEEE-TTS-EEEEEEEEEEEES---CC
T ss_pred CEeCCCEEEEEEECCeEeEEECCCeEEEeCC-cCeE-EEEeCEEEecccchhhhhhhhcccceeeeeEEEEEEech--HH
Confidence 5899999999999999999999999999998 5777 48999999999987 9999999999999999999976 34
Q ss_pred hhhccc----cChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHHH
Q 023168 85 DAFYKL----SNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRA 160 (286)
Q Consensus 85 ~~~~~~----~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~a 160 (286)
.++..+ .+++..|++.+.+++|++++++++++++++|.++.+.+++.|++.+.+|||+|.+|+|.+++||+++.++
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~~~~~~~~~~r~~~~~~v~~~l~~~~~~~Gi~i~~v~i~~~~~~~~~~~~ 156 (179)
T PF01145_consen 77 KFVQNYEGGEEDPENLLRQIVESALREVISSYSLEEIYSNREEIADEVREQLQEALEEYGIEITSVQITDIDPPQEVEEA 156 (179)
T ss_dssp CCCCCCSS-HCHHHHHHHHHHHHHHHHHHHCS-HHHHHHTHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEECTTHHHH
T ss_pred HHHHhhhcchhhhhhhhhhhhhhhhheEeeeeehHHhhhhhhhhhHhHHHHHhhhccccEEEEEEEEEeecCCCHHHHHH
Confidence 444555 6788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHhHHHHHHH
Q 023168 161 MNEINAAARLR-LAANEKAEAE 181 (286)
Q Consensus 161 i~~~~~Ae~~~-~a~~~~Ae~e 181 (286)
|.+++.|++++ ++.+.+||+|
T Consensus 157 i~~~~~a~~~~~~~~~~~a~~e 178 (179)
T PF01145_consen 157 IEEKQRAEQEAQQAEIERAEAE 178 (179)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999887 5555554443
No 17
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-26 Score=189.13 Aligned_cols=235 Identities=17% Similarity=0.246 Sum_probs=182.7
Q ss_pred CCcceEEEecCCeEEEEE-ecCeee-eEeCCcceeecCCCcceeeEeeeeeEEEeecCCCcccCCCcEEEEeEEEEEEEC
Q 023168 2 GQTLGCIQVEQSKVVIRE-QFGKFD-HVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCETKTKDNVFVNVVASVQYRAL 79 (286)
Q Consensus 2 ~~~~~~~~V~~g~~~Vv~-~fGk~~-~v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~~~~T~D~~~v~v~~~v~yrI~ 79 (286)
|...|+|.|+-||++|++ |+|.++ +++..|+||.+||+ ++- ..+|+|-+...+....-|+|.+.|++...+.-|-.
T Consensus 33 ~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwf-e~p-IiYDvRarP~~i~S~tGskDLQmVnI~lRVLsRP~ 110 (290)
T KOG3090|consen 33 GVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWF-ERP-IIYDVRARPRLISSPTGSKDLQMVNIGLRVLSRPM 110 (290)
T ss_pred eecceeEeecCCceEEEEeccccchhccccCCceEeeecc-ccc-eeeeeccCcccccCCCCCcceeEEEeeeEEecCCC
Confidence 445788999999999998 688776 68899999999994 654 26888988888888899999999999888877765
Q ss_pred cchHhhhhcc--ccChH-HHHHHHHHHHHHhHccCCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChH
Q 023168 80 ADKAYDAFYK--LSNTR-GQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVH 156 (286)
Q Consensus 80 d~~~~~~~~~--~~~~~-~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~ 156 (286)
..... ..|. ..|++ ..|.+++...|+.++++++..++++.|+.++..|++.|-++..++.|.+++|.|+++.|.++
T Consensus 111 ~~~Lp-~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLITQRe~VSrliRk~L~eRA~~Fni~LDDVSiT~l~F~~e 189 (290)
T KOG3090|consen 111 ADQLP-EIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKE 189 (290)
T ss_pred hhhhH-HHHHHhccCcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccceEeecceeeeeecCHH
Confidence 42222 2222 34554 67888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHH
Q 023168 157 VKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDM 236 (286)
Q Consensus 157 v~~ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~ 236 (286)
+..|++.++.|.|+.+.+.. -+.+|+.|++.++.+|+|||++.+..++|.+. ++ -
T Consensus 190 fTaAiEaKQvA~QeAqRA~F--------~VekA~qek~~~ivrAqGEaksAqliGeAi~n-------------n~----~ 244 (290)
T KOG3090|consen 190 FTAAIEAKQVAAQEAQRAKF--------IVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKN-------------NP----A 244 (290)
T ss_pred HHHHHHHHHHHHHHHhhhhh--------hhHHHHHhhhhhhhhhccchHHHHHHHHHHhC-------------Cc----c
Confidence 99999999999998765421 23344445555555555554444444444432 22 4
Q ss_pred HHHHHHHHHHHHHhc--cCCCcEEEEcCCC
Q 023168 237 VLVTQYFDTMKEIGA--SSKSSSVFIPHGP 264 (286)
Q Consensus 237 ~l~~~~leal~~~~~--~~~~~~i~lp~~~ 264 (286)
++.+|.+++-+++++ +.+.|.++|+++.
T Consensus 245 fi~Lrki~aAr~IA~tia~S~NkvyL~~~~ 274 (290)
T KOG3090|consen 245 FITLRKIEAAREIAQTIASSANKVYLSSDD 274 (290)
T ss_pred ceeehhHHHHHHHHHHHhcCCCeEEecccc
Confidence 566888998888875 4567889999763
No 18
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.7e-25 Score=181.91 Aligned_cols=233 Identities=17% Similarity=0.227 Sum_probs=181.2
Q ss_pred ceEEEecCCeEEEEE-ecCeee-eEeCCcceeecCCCcceeeEeeeeeEEEeecCCCcccCCCcEEEEeEEEEEEECcch
Q 023168 5 LGCIQVEQSKVVIRE-QFGKFD-HVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKCETKTKDNVFVNVVASVQYRALADK 82 (286)
Q Consensus 5 ~~~~~V~~g~~~Vv~-~fGk~~-~v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~ 82 (286)
+++|.|+-||++|++ ||-.+. .+.+.|.||.+||. ++- +.+|+|.....++...-|||.+.|++...+.||-....
T Consensus 25 s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~-qk~-~i~d~rs~p~~v~~itGskdLQ~VniTlril~rp~~sq 102 (271)
T KOG3083|consen 25 SALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWV-QKP-IIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVVSQ 102 (271)
T ss_pred hhhcccCCCceeEEeecccchhhhcccCCceeeeeec-cCc-EEEeccCCCcccccccCchhhhcccceEEEEecccccc
Confidence 577999999999998 575554 58899999999994 554 47899988888888889999999999999998875432
Q ss_pred Hhhhhcc-ccChH-HHHHHHHHHHHHhHccCCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHHH
Q 023168 83 AYDAFYK-LSNTR-GQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRA 160 (286)
Q Consensus 83 ~~~~~~~-~~~~~-~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~a 160 (286)
....+.+ ..|++ ..|..+....|++++++++..++++.|+.+++.++..|.+....+|+.+++|.|..+.|..++.+|
T Consensus 103 LP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliTqRe~vS~~v~~~lt~rA~~Fgl~LddvsiThltfGkEFt~A 182 (271)
T KOG3083|consen 103 LPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSNDLTERAATFGLILDDVSITHLTFGKEFTEA 182 (271)
T ss_pred cchHHHhhcccccccccccchHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHhhCeeechhhhhhhhhhHHHHHH
Confidence 2222222 34555 567778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh---HHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHH
Q 023168 161 MNEINAAARLRLAA---NEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMV 237 (286)
Q Consensus 161 i~~~~~Ae~~~~a~---~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~ 237 (286)
++.++.|+|+.+.+ ..+||.+|++.++.||||++++...++ +.+.+ + +-+
T Consensus 183 vE~KQVAQQEAErarFvVeKAeQqk~aavIsAEGds~aA~li~~-----------sla~a------------G----~gL 235 (271)
T KOG3083|consen 183 VEAKQVAQQEAERARFVVEKAEQQKKAAVISAEGDSKAAELIAN-----------SLATA------------G----DGL 235 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeecccchHHHHHHHH-----------HHhhc------------C----Cce
Confidence 99999999987764 345566666555555555555544333 33322 1 234
Q ss_pred HHHHHHHHHHHHhc--cCCCcEEEEcCCCCc
Q 023168 238 LVTQYFDTMKEIGA--SSKSSSVFIPHGPGA 266 (286)
Q Consensus 238 l~~~~leal~~~~~--~~~~~~i~lp~~~~~ 266 (286)
+..+.+|+-++++. +.+.|+.|+|.+.+.
T Consensus 236 ielrrlEAa~dia~~Ls~s~nv~YLp~g~s~ 266 (271)
T KOG3083|consen 236 IELRRLEAAEDIAYQLSRSRNVTYLPAGQSM 266 (271)
T ss_pred eeehhhhhHHHHHHHHhcCCCceeccCCcce
Confidence 55678888887764 467889999966443
No 19
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.89 E-value=1.7e-22 Score=171.95 Aligned_cols=157 Identities=17% Similarity=0.194 Sum_probs=130.6
Q ss_pred ceEEEecCCeEEEEEecCeeeeEeCCcceeecC----CCc--------------ceeeEeeeeeEEEeecC-------CC
Q 023168 5 LGCIQVEQSKVVIREQFGKFDHVLEPGCQCLPW----CLG--------------YKVAGRLSLRVQQLDVK-------CE 59 (286)
Q Consensus 5 ~~~~~V~~g~~~Vv~~fGk~~~v~~pGlh~~~P----~~~--------------~~v~~~v~~r~~~~~~~-------~~ 59 (286)
.|.++|++||+||++++|++.++++||.|+.+| ++. ..+ +.++.+.+..... ..
T Consensus 14 ~s~~iV~e~~~av~~~~Gk~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~ 92 (207)
T cd03408 14 GSQLIVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEV-YFFNTRVFTDLLWGTPAPVFGR 92 (207)
T ss_pred CCEEEEcCCcEEEEEECCEEEEEecCCcceeeecCccHHHHhcChhhhCcCCceeEE-EEEECEEEeccccCCCCCeeee
Confidence 488999999999999999999999998887654 311 113 3677776655321 24
Q ss_pred cccCCCcEEEEeEEEEEEECcchHhhhhccc---------cChHHHHHHHHHHHHHhHccCCCHHHHHHh--HHHHHHHH
Q 023168 60 TKTKDNVFVNVVASVQYRALADKAYDAFYKL---------SNTRGQIQAYVFDVIRASVPKLNLDAAFEQ--KNEIAKAV 128 (286)
Q Consensus 60 ~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~---------~~~~~~l~~~~~~~lr~vi~~~~~~el~~~--R~~i~~~i 128 (286)
..|+|+++|.+++++.|||.|| .+++.++ .+....+.+.+++++|+++|++++++++.+ |++|++.+
T Consensus 93 ~~~~~~v~v~v~~~~~~kI~Dp--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~l~~~~~r~~i~~~v 170 (207)
T cd03408 93 DSEFGGVPLRAFGTYSLKVTDP--VLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAV 170 (207)
T ss_pred CCccceEEEEeeEEEEEEEcCH--HHHHHHhcCCCcceeHHHHHHHHHHHHHHHHHHHHHhcCCeeEEhhhhHHHHHHHH
Confidence 5788999999999999999995 4554433 245678999999999999999999999986 99999999
Q ss_pred HHHHHHHhhccCeEEEEEEEecccCChHHHHHHHHH
Q 023168 129 EEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEI 164 (286)
Q Consensus 129 ~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~ 164 (286)
++.+++.+++||++|.+|.|++|+||++++++|.++
T Consensus 171 ~~~l~~~~~~~Gi~i~~v~I~~i~~p~e~~~ai~~r 206 (207)
T cd03408 171 REALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHhh
Confidence 999999999999999999999999999999998853
No 20
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=99.85 E-value=4.7e-19 Score=146.78 Aligned_cols=190 Identities=15% Similarity=0.171 Sum_probs=145.1
Q ss_pred ceEEEecCCeEEEEEecCeee-eEeCCcceeecCCCcceeeEeeeeeEEEeecCC-CcccCCCcEEEEeEE-EEEEECcc
Q 023168 5 LGCIQVEQSKVVIREQFGKFD-HVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKC-ETKTKDNVFVNVVAS-VQYRALAD 81 (286)
Q Consensus 5 ~~~~~V~~g~~~Vv~~fGk~~-~v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~-v~yrI~d~ 81 (286)
++++.|++||+||.+|-|-.- .+.+||+|+.+|| +..+. .+.+..|+-++.. .|-|+.|+.+..|-. +.-++.+.
T Consensus 21 s~vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPF-iTt~k-sVQvTLQTDev~nvPCGTsGGVlIyfdrIEVVN~L~~d 98 (322)
T KOG2962|consen 21 SAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPF-ITTYK-SVQVTLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRPD 98 (322)
T ss_pred HHHhhcccCceEEEEecceeeeccCCCCcEEEeee-eecee-eeEEEeeccccccCCCCCCCcEEEEEehhhhhhhhchh
Confidence 567889999999999999865 4789999999999 56664 6777777777776 999999998877632 11122211
Q ss_pred hHhhhhccc-cChH-HHHHHHHHHHHHhHccCCCHHHHHH-hHHHHHHHHHHHHHHHhhcc--CeEEEEEEEecccCChH
Q 023168 82 KAYDAFYKL-SNTR-GQIQAYVFDVIRASVPKLNLDAAFE-QKNEIAKAVEEELEKAMSHY--GYEIVQTLIVDIEPDVH 156 (286)
Q Consensus 82 ~~~~~~~~~-~~~~-~~l~~~~~~~lr~vi~~~~~~el~~-~R~~i~~~i~~~l~~~~~~~--Gi~V~~v~I~~i~~p~~ 156 (286)
.++..+.+. .|++ .+|.+-+...+...|+.+++.+++- --++|.++++..|++.+..+ |++|..|.+.....|+.
T Consensus 99 ~Vydiv~NYtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl~iqaVRVTKPkIPEa 178 (322)
T KOG2962|consen 99 AVYDIVKNYTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGLEIQAVRVTKPKIPEA 178 (322)
T ss_pred HHHHHHHHcccCCcchhhhhHHHHHHHhHhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCcEEEEEEecCCCChHH
Confidence 122222221 2444 6788999999999999999999998 68999999999999999988 99999999999999999
Q ss_pred HHHHHHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHhhHHHHHH
Q 023168 157 VKRAMNEINAAARLR--------LAANEKAEAEKILQIKRAEGEAEAKY 197 (286)
Q Consensus 157 v~~ai~~~~~Ae~~~--------~a~~~~Ae~e~~~~i~~Aeaeaea~~ 197 (286)
+...++ .|++|+.+ .-...+||.++...++.||..|+-++
T Consensus 179 iRrN~E-~ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~ 226 (322)
T KOG2962|consen 179 IRRNFE-LMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAK 226 (322)
T ss_pred HHHhHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999887 45555532 22345778888888887776555443
No 21
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.81 E-value=1.9e-19 Score=141.10 Aligned_cols=118 Identities=23% Similarity=0.351 Sum_probs=104.1
Q ss_pred eeeeEEEeecCCCcccCCCcEEEEeEEEEEEECcchHhhhhccc-cC-hHHHHHHHHHHHHHhHccCCCHHHHHH-hHHH
Q 023168 47 LSLRVQQLDVKCETKTKDNVFVNVVASVQYRALADKAYDAFYKL-SN-TRGQIQAYVFDVIRASVPKLNLDAAFE-QKNE 123 (286)
Q Consensus 47 v~~r~~~~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~-~~-~~~~l~~~~~~~lr~vi~~~~~~el~~-~R~~ 123 (286)
+++|.++.+.+..+.|+||..+.++++++|||.++++...+... .+ .+..|.+.+++++|+++|+++++++++ +|++
T Consensus 3 ~~~r~~~~~~~~~v~T~D~~~v~vd~~v~y~V~~~~~~~~~~~~~~~~~~~~i~~~~~~~lR~~~~~~~~~e~i~~~R~~ 82 (124)
T cd03400 3 YSTRLQEVDEKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKE 82 (124)
T ss_pred ccceeeecccceEEECCCCCEEEEEEEEEEEEChhhHHHHHHHhCcchhheeechhHHHHHHHHhcCCCHHHHhhhhHHH
Confidence 67788888888899999999999999999999876544333222 22 346799999999999999999999997 8999
Q ss_pred HHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHHHHHHH
Q 023168 124 IAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEI 164 (286)
Q Consensus 124 i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~ 164 (286)
|.+.+.+.+++.+.+|||+|.+|+|++++||+++.+||+++
T Consensus 83 i~~~i~~~l~~~~~~~Gi~v~~v~i~~i~~P~~v~~aI~~k 123 (124)
T cd03400 83 IESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEEEecccCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999865
No 22
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.81 E-value=1.4e-17 Score=145.61 Aligned_cols=159 Identities=14% Similarity=0.088 Sum_probs=122.7
Q ss_pred EEEecCCeEEEEEecCeeeeEeCCcceeecCCCcceeeEeeeeeEEEeecCC-CcccCCCcEEEEeEEEEEEECcchHhh
Q 023168 7 CIQVEQSKVVIREQFGKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAYD 85 (286)
Q Consensus 7 ~~~V~~g~~~Vv~~fGk~~~v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~d~~~~~ 85 (286)
|++-.+++..++.-+|.-...+-+| .|.+|| +++. ++|+...++.+.. .+.|+.|+++.|.+..+..|.-.++..
T Consensus 2 f~~~~~~~~l~itg~g~~~~~lv~~-~wvf~w--q~~q-~~~ln~mtl~~~~e~v~tsegvP~~vtgVaqvki~~~~~~e 77 (428)
T KOG2668|consen 2 FKVAGASQYLAITGGGIEDIKLVKK-SWVFPW--QQCT-VFDVSPMTLTFKVENVMTSEGVPFVVTGVAQVKIRVDDADE 77 (428)
T ss_pred CccCCccceEEeecccccCceeccc-ceeeee--eeee-EEeecceeeeeecchhhcccCCceEeeeeEEEeeccCCHHH
Confidence 4556788888999888755444443 344577 4553 7899988888887 599999999999999888775432111
Q ss_pred --------hhc-cccChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCCh-
Q 023168 86 --------AFY-KLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDV- 155 (286)
Q Consensus 86 --------~~~-~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~- 155 (286)
++. +..+....+...+.+..|.++|++|+++++.+|.+|...+++..+..+.++||.|.+..|+|+...+
T Consensus 78 lL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIyKdrk~F~k~Vfeva~~dl~~mGi~I~s~tiKdl~D~~g 157 (428)
T KOG2668|consen 78 LLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIYKDRKEFKKEVFEVAQLDLGQMGIVIYSATIKDLVDVPG 157 (428)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHHHhccHHHHHhhHHHHHHHHHHHhhhhhhhcceEEEEeEhhhhhcccc
Confidence 111 1223446677788899999999999999999999999999999999999999999999999998766
Q ss_pred -HHHHHHHHHHHHHH
Q 023168 156 -HVKRAMNEINAAAR 169 (286)
Q Consensus 156 -~v~~ai~~~~~Ae~ 169 (286)
+|..++....+|+.
T Consensus 158 ~~YlssLGka~taev 172 (428)
T KOG2668|consen 158 HEYLSSLGKATTAEV 172 (428)
T ss_pred hHHHHHhhhHHHHHH
Confidence 68888875444443
No 23
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.78 E-value=1.8e-18 Score=136.21 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=101.9
Q ss_pred eeeeEEEeecCC-CcccCCCcEEEEeEEEEEEECcchHh--hhhc---c--ccChHHHHHHHHHHHHHhHccCCCHHHHH
Q 023168 47 LSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAY--DAFY---K--LSNTRGQIQAYVFDVIRASVPKLNLDAAF 118 (286)
Q Consensus 47 v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~d~~~~--~~~~---~--~~~~~~~l~~~~~~~lr~vi~~~~~~el~ 118 (286)
.++|.+.++++. .+.|+|++++.++++++|||.||..+ .... + ..+....+.+.+++++|+++|++++++++
T Consensus 2 ~~lr~~~~~~~~q~v~TkD~~~v~vd~~~~~rV~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lR~~ig~~tl~el~ 81 (128)
T cd03399 2 LSLTSMVLRVGSEAVITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIY 81 (128)
T ss_pred ccccceeeeccccceecCCCcEEEEEEEEEEEeCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 578889999987 89999999999999999999996421 1111 1 13457889999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHHHHH
Q 023168 119 EQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMN 162 (286)
Q Consensus 119 ~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai~ 162 (286)
++|++|.++|.+.++..+++|||+|.+|.|++|++|+.+.+++.
T Consensus 82 ~~R~~i~~~i~~~v~~~~~~~Gi~i~~v~I~~i~~~~~~~~~~~ 125 (128)
T cd03399 82 EDRDKFAEQVQEVVAPDLNKMGLELDSFTIKDITDTDGYLNNLG 125 (128)
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCEEEEEeeEEecCCCCCHHHcC
Confidence 99999999999999999999999999999999999999888765
No 24
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.75 E-value=3e-16 Score=146.93 Aligned_cols=194 Identities=20% Similarity=0.158 Sum_probs=154.9
Q ss_pred eEEEecCCeEEEEEec---------CeeeeEeCCcceeecCCCcceeeEeeeeeEEEeecC-CCcccCCCcEEEEeEEEE
Q 023168 6 GCIQVEQSKVVIREQF---------GKFDHVLEPGCQCLPWCLGYKVAGRLSLRVQQLDVK-CETKTKDNVFVNVVASVQ 75 (286)
Q Consensus 6 ~~~~V~~g~~~Vv~~f---------Gk~~~v~~pGlh~~~P~~~~~v~~~v~~r~~~~~~~-~~~~T~D~~~v~v~~~v~ 75 (286)
.||++-+...+++..+ |.-.+++.+|+||++|+ ++.. +++++++..+++. ..++|+||.++.++++.+
T Consensus 33 ~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi-~q~~-~r~~l~~i~l~v~~~~v~t~Dg~p~~v~~~a~ 110 (548)
T COG2268 33 RFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPI-FQTI-ERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAY 110 (548)
T ss_pred eeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecc-eeee-EEeeeeeeeeeeeeeeeEecCCCccceeEEEE
Confidence 5666555555555544 44457899999999999 5665 4899999999888 589999999999999999
Q ss_pred EEECcc--hHhhhh--cccc----ChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEE
Q 023168 76 YRALAD--KAYDAF--YKLS----NTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTL 147 (286)
Q Consensus 76 yrI~d~--~~~~~~--~~~~----~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~ 147 (286)
-+|.|. +...+. +... +....+...+.+.+|.+++++|+.++..+|..|...|.+.+...+++.|+.|+++.
T Consensus 111 v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~edR~~F~~~V~~~v~~dL~k~Gl~l~s~~ 190 (548)
T COG2268 111 VKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVLDSLA 190 (548)
T ss_pred EEecCCHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHhcCHHHHhhHHhhHHHHHHHHHHHHHHhcCeeeeeee
Confidence 999883 222222 1222 34567888899999999999999999999999999999999999999999999999
Q ss_pred EecccCC-------hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhch
Q 023168 148 IVDIEPD-------VHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGL 201 (286)
Q Consensus 148 I~~i~~p-------~~v~~ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Ae 201 (286)
|.++..+ ..|.++...+..++-.+.+.+.++|.++...+..++++.++.+.+-+
T Consensus 191 I~~i~d~~~~~~d~~~yLda~G~r~i~qv~~~a~ia~~E~~~~t~i~i~~a~~~a~~~e~~ 251 (548)
T COG2268 191 INDINDTSKENQDPNNYLDALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELE 251 (548)
T ss_pred ecccccccccccChhhhhhhcChHHHHHHHHHHHHHHhhhhhhhHHHHHhhhhHHHHHhhh
Confidence 9999988 89999999988888888888887777777777766665555544333
No 25
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.67 E-value=1.7e-15 Score=116.89 Aligned_cols=111 Identities=37% Similarity=0.558 Sum_probs=97.9
Q ss_pred EEeecCC-CcccCCCcEEEEeEEEEEEECcchHhhhhccccCh--HHHHHHHHHHHHHhHccCCCHHHHHHhHHHHHHHH
Q 023168 52 QQLDVKC-ETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNT--RGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAV 128 (286)
Q Consensus 52 ~~~~~~~-~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~--~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~i 128 (286)
.+.+.+. .+.|+|++++++++++.|+|.+|. .+++...+. ...+.+.+.+++|+++++++++++.++|++|.+.+
T Consensus 7 ~~~~~~~~~~~t~d~~~i~~~~~~~~~v~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~i~~~v 84 (121)
T cd02106 7 QTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPV--KALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELLEDRDEIAAEV 84 (121)
T ss_pred EEecCCCceEEecCCCEEEEEEEEEEEEeCHH--HHHHhcCCccHHHHHHHHHHHHHHHHHccccHHHHHhhHHHHHHHH
Confidence 3444443 899999999999999999999964 344544443 47999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCeEEEEEEEecccCChHHHHHHHHH
Q 023168 129 EEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEI 164 (286)
Q Consensus 129 ~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~ 164 (286)
++.+...+..||++|.+|.|.++.||+++.++++++
T Consensus 85 ~~~l~~~~~~~Gi~i~~v~i~~i~~~~~~~~ai~~~ 120 (121)
T cd02106 85 REALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHHHHHHHHhcCCEEEEEEEEecCCCHHHHHHHHhh
Confidence 999999999999999999999999999999999864
No 26
>PF13421 Band_7_1: SPFH domain-Band 7 family
Probab=99.55 E-value=6.5e-13 Score=112.90 Aligned_cols=156 Identities=18% Similarity=0.218 Sum_probs=120.4
Q ss_pred eEEEecCCeEEEEEecCeeeeEeCCcceee----cCCC--------------cceeeEeeeeeEEE-eec--CCCcccCC
Q 023168 6 GCIQVEQSKVVIREQFGKFDHVLEPGCQCL----PWCL--------------GYKVAGRLSLRVQQ-LDV--KCETKTKD 64 (286)
Q Consensus 6 ~~~~V~~g~~~Vv~~fGk~~~v~~pGlh~~----~P~~--------------~~~v~~~v~~r~~~-~~~--~~~~~T~D 64 (286)
|-.+|++||++|+++-|++..+++||.|-+ +|++ ...| |.++++... +.. +..+.-.|
T Consensus 15 S~LiV~egQ~Avfv~~G~i~d~~~pG~y~l~T~n~P~l~~l~~~~~Gg~spf~~eV-yFvn~~~~~~~kwGT~~pi~~~D 93 (211)
T PF13421_consen 15 SQLIVREGQCAVFVNDGKIADVFGPGRYTLDTDNIPILSTLKNWKFGGESPFKAEV-YFVNTKEITNIKWGTPNPIPYRD 93 (211)
T ss_pred CEEEECCCCEEEEEECCEEEEEecCceEEEecCCchHHHHHhhhccCCCCCceEEE-EEEECeEecCCccCCCCCeeecC
Confidence 678999999999999999989999999987 4442 1223 567766432 122 11222222
Q ss_pred ----CcEEEEeEEEEEEECcchHhhhhc---------cccChHHHHHHHHHHHHHhHcc--CCCHHHHHHhHHHHHHHHH
Q 023168 65 ----NVFVNVVASVQYRALADKAYDAFY---------KLSNTRGQIQAYVFDVIRASVP--KLNLDAAFEQKNEIAKAVE 129 (286)
Q Consensus 65 ----~~~v~v~~~v~yrI~d~~~~~~~~---------~~~~~~~~l~~~~~~~lr~vi~--~~~~~el~~~R~~i~~~i~ 129 (286)
.+++.+.+++.|||.||. .++. ..++..+.+++.+...+.+.++ ++++.|+-++-.+|++.++
T Consensus 94 ~~~~~v~lra~G~ys~rI~Dp~--~F~~~~vg~~~~~~~~~i~~~l~~~i~~~i~~~l~~~~~~~~~i~a~~~eis~~~~ 171 (211)
T PF13421_consen 94 PEYGPVRLRAFGTYSFRIVDPV--LFIRNLVGTQSEFTTEEINEQLRSEIVQAIADALAESKISILDIPAHLDEISEALK 171 (211)
T ss_pred CCCCcEEEEEEEEEEEEEeCHH--HHHHhhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 477889999999999964 3332 2234456777777777777776 5899999999999999999
Q ss_pred HHHHHHhhccCeEEEEEEEecccCChHHHHHHHHH
Q 023168 130 EELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEI 164 (286)
Q Consensus 130 ~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~ 164 (286)
+.|++.++.+|++|.++.|.+|++|++++++|+++
T Consensus 172 ~~l~~~~~~~Gi~l~~f~I~~i~~pee~~~~i~~~ 206 (211)
T PF13421_consen 172 EKLNPEFERYGIELVDFGIESISFPEEVQKAIDKR 206 (211)
T ss_pred HHHHHHHHhcCcEEEEEEEEeecCCHHHHHHHHHH
Confidence 99999999999999999999999999999998864
No 27
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=99.10 E-value=6e-09 Score=89.60 Aligned_cols=158 Identities=11% Similarity=0.150 Sum_probs=118.9
Q ss_pred eEEEecCCeEEEEEecCeeeeEeC-Ccceee----cCCC--------------cceeeEeeeeeEEE-eecC--CCcc--
Q 023168 6 GCIQVEQSKVVIREQFGKFDHVLE-PGCQCL----PWCL--------------GYKVAGRLSLRVQQ-LDVK--CETK-- 61 (286)
Q Consensus 6 ~~~~V~~g~~~Vv~~fGk~~~v~~-pGlh~~----~P~~--------------~~~v~~~v~~r~~~-~~~~--~~~~-- 61 (286)
|+.+|.|++-++...-|++..+.. +|.+-+ +|++ -..| |.++++++. +... ..+.
T Consensus 40 s~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eV-yfvntqe~~girwGT~qpin~~ 118 (345)
T COG4260 40 SILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEV-YFVNTQEIKGIRWGTPQPINYF 118 (345)
T ss_pred cEEEEecCceEEEEcCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceE-EEEecceecceecCCCCCeecc
Confidence 778999999999999999988764 886543 4432 2223 567777655 3332 2222
Q ss_pred ---cCCCcEEEEeEEEEEEECcchHh-------hhhccccChHHHHHHHHHHHHHhHccCC--CHHHHHHhHHHHHHHHH
Q 023168 62 ---TKDNVFVNVVASVQYRALADKAY-------DAFYKLSNTRGQIQAYVFDVIRASVPKL--NLDAAFEQKNEIAKAVE 129 (286)
Q Consensus 62 ---T~D~~~v~v~~~v~yrI~d~~~~-------~~~~~~~~~~~~l~~~~~~~lr~vi~~~--~~~el~~~R~~i~~~i~ 129 (286)
-...+.+...+++.|+|.||..+ +..|.+++..+.+-+.+..+|...++++ ++..+-++--+|++.+.
T Consensus 119 dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~m~ 198 (345)
T COG4260 119 DNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKYMA 198 (345)
T ss_pred cccccceeEEeecceEEEEecCHHHHHHhccCCCceEEHHHHHHHHHHHHHHHHHHHHHhcCceehhhhhhHHHHHHHHH
Confidence 22357889999999999996432 1224455667777778888888777654 44566668899999999
Q ss_pred HHHHHHhhccCeEEEEEEEecccCChHHHHHHHHH
Q 023168 130 EELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEI 164 (286)
Q Consensus 130 ~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~ 164 (286)
+.|.+.+..+|..|++|+|-+|++|++.+..|+.+
T Consensus 199 e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r 233 (345)
T COG4260 199 EVLDEQWTQYGMAVDSFQVASISYPDESQALINMR 233 (345)
T ss_pred HHHhHHHHhhCceEeeEEEEEecCcHHHHHHHHhh
Confidence 99999999999999999999999999999999863
No 28
>PTZ00491 major vault protein; Provisional
Probab=98.98 E-value=1.2e-07 Score=93.10 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=105.6
Q ss_pred EEecCCeEEEEEec--CeeeeEeCCcceeecCCCcceeeEeeeeeE------EE-----eecCC-------CcccCCCcE
Q 023168 8 IQVEQSKVVIREQF--GKFDHVLEPGCQCLPWCLGYKVAGRLSLRV------QQ-----LDVKC-------ETKTKDNVF 67 (286)
Q Consensus 8 ~~V~~g~~~Vv~~f--Gk~~~v~~pGlh~~~P~~~~~v~~~v~~r~------~~-----~~~~~-------~~~T~D~~~ 67 (286)
|.||.+.+.=++-+ ++-.-++||-+.++=|- +... .+++.- .. +.+.+ .+-|+|...
T Consensus 465 ~~vphn~avqvydyk~~~~Rvv~GP~~v~L~pd--E~ft-vlsLSgg~PK~~n~i~~l~l~lGPdf~tD~i~vET~DhAr 541 (850)
T PTZ00491 465 YKVPHNAAVQLYDYKTKKSRVVFGPDLVMLEPD--EEFT-VLSLSGGKPKVPNQIHSLHLFLGPDFMTDVIHVETSDHAR 541 (850)
T ss_pred EEcCCCcEEEEEEcccCceEEEECCceEEecCC--CceE-EEEecCCCCCCcchhhhhhhhhCCccceeEEEEEEcccce
Confidence 56777776666653 55445789999998886 3332 333321 11 11111 468999999
Q ss_pred EEEeEEEEEEEC----cchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHhHH-HHHHHHHHHHHH--------
Q 023168 68 VNVVASVQYRAL----ADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKN-EIAKAVEEELEK-------- 134 (286)
Q Consensus 68 v~v~~~v~yrI~----d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~-~i~~~i~~~l~~-------- 134 (286)
+.+.++++|+.. ||.....+|++.|+-+-+-..+.+.+|..++..+++++..+-. -|.+.|.....+
T Consensus 542 L~l~LsYnW~F~v~~~d~~~~~k~Fsv~DFvGd~Ck~iaSrIR~aVA~~~Fd~FHknsa~iiR~aVFg~~~e~~~~r~~l 621 (850)
T PTZ00491 542 LALQLSYNWYFDVTDGNPEDAQKCFSVPDFVGDACKTIASRVRAAVASEPFDEFHKNSAKIIRQAVFGSNDETGEVRDSL 621 (850)
T ss_pred EEEEEEEEEEEecCCCChhhHhheeccCchHHHHHHHHHHHHHHHHhcCCHHHHhccHHHHHHHHhccCcCCCCccccce
Confidence 999999999987 4433467899999998888889999999999999999998543 334444431222
Q ss_pred HhhccCeEEEEEEEecccCC-hHHHHHHH
Q 023168 135 AMSHYGYEIVQTLIVDIEPD-VHVKRAMN 162 (286)
Q Consensus 135 ~~~~~Gi~V~~v~I~~i~~p-~~v~~ai~ 162 (286)
.+...|+.|.+|.|+++.|- +...++++
T Consensus 622 ~F~~N~lvit~VDvqsvEpvD~~tr~~Lq 650 (850)
T PTZ00491 622 RFPANNLVITNVDVQSVEPVDERTRDSLQ 650 (850)
T ss_pred EEccCCeEEEEEeeeeeeecCHHHHHHHH
Confidence 34556999999999999974 34555555
No 29
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.37 E-value=0.0014 Score=57.00 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Q 023168 181 EKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLA 220 (286)
Q Consensus 181 e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~ 220 (286)
++.+...+|+|++++.++.|+|++++.++.|+|++++...
T Consensus 167 ~~~a~~~~ae~~~~a~~~~aea~~~~~~~~Aea~a~a~~~ 206 (242)
T cd03405 167 ERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEI 206 (242)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555555555555555555555433
No 30
>PF12127 YdfA_immunity: SigmaW regulon antibacterial; InterPro: IPR022853 This entry represents the uncharacterised protein family UPF0365. Its function is not known. The proteins in this family are found in bacteria. They are about 330 amino acids in length and encoded by a gene located in an operon which confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=97.23 E-value=0.01 Score=51.64 Aligned_cols=105 Identities=20% Similarity=0.222 Sum_probs=77.7
Q ss_pred eeeEEEeecCC-CcccCCCcEEEEeEEEEEEECcchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHHHH
Q 023168 48 SLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAK 126 (286)
Q Consensus 48 ~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~ 126 (286)
+.....++.|. ....+||..+.+.+.+..|-. . ..+......+..+-..-++.+..+=+.-+-.+++.+-+.|++
T Consensus 121 SVnPkVI~~P~i~aVAkdGIql~~kArVTVRaN---i-~rLVGGAgEeTIiARVGEgIVttiGSa~~hk~VLEnPd~ISk 196 (316)
T PF12127_consen 121 SVNPKVIDTPTIAAVAKDGIQLKVKARVTVRAN---I-DRLVGGAGEETIIARVGEGIVTTIGSAESHKEVLENPDSISK 196 (316)
T ss_pred ccCCeeecCcchhhhhcCCeEEEEEEEEEEEec---H-HHhccCCCcHHHHHHHccceeeeeccchhHHHHhcCHHHHHH
Confidence 33445566665 778899999999888888875 2 345555666677777777777776677788899999999988
Q ss_pred HHHHHHHHHhhc-cCeEEEEEEEecccCChHHHH
Q 023168 127 AVEEELEKAMSH-YGYEIVQTLIVDIEPDVHVKR 159 (286)
Q Consensus 127 ~i~~~l~~~~~~-~Gi~V~~v~I~~i~~p~~v~~ 159 (286)
.+.+. -++. --++|.|+.|-|++.-+++-.
T Consensus 197 ~VL~k---gLDagTAFeIlSIDIaDidVG~NIGA 227 (316)
T PF12127_consen 197 TVLEK---GLDAGTAFEILSIDIADIDVGENIGA 227 (316)
T ss_pred HHHhh---CCCcCceeEEEEeeeeccccchhhch
Confidence 88653 4443 469999999999998877543
No 31
>TIGR01932 hflC HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367)
Probab=96.90 E-value=0.009 Score=54.21 Aligned_cols=40 Identities=25% Similarity=0.437 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHH
Q 023168 178 AEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDS 217 (286)
Q Consensus 178 Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a 217 (286)
||.++.+...+++|++++.++.|+|++++.++.|+|++++
T Consensus 219 aere~~a~~~r~ege~~a~~i~a~A~~e~~~~~aeA~a~a 258 (317)
T TIGR01932 219 SEREQIARMHRSQGEEKAEEILGKAEYEVRKILSEAYRTA 258 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445556666666666666655555555555544
No 32
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=96.88 E-value=0.011 Score=53.89 Aligned_cols=72 Identities=17% Similarity=0.227 Sum_probs=51.2
Q ss_pred EEEEecccCCh-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHh
Q 023168 145 QTLIVDIEPDV-HVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSE 223 (286)
Q Consensus 145 ~v~I~~i~~p~-~v~~ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~ 223 (286)
.+.|.++.+.+ .+-..+.+.+. ...+||.++.+...+|+|++++.+++|+|++++.+++|+|++++....++
T Consensus 202 GI~V~~V~i~~i~~P~~v~~ai~-------~~~~Aere~~a~~~~aege~~a~~~~a~A~~e~~~~~AeA~~~a~i~~ae 274 (334)
T PRK11029 202 GIEVVDVRIKQINLPTEVSDAIY-------NRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGE 274 (334)
T ss_pred CcEEEEEEEEecCCCHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 36677776643 33444443333 22356777777888999999999999999999999999988877655444
No 33
>PRK13665 hypothetical protein; Provisional
Probab=96.77 E-value=0.014 Score=50.49 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=71.1
Q ss_pred eeeEEEeecCC-CcccCCCcEEEEeEEEEEEECcchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHHHH
Q 023168 48 SLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAK 126 (286)
Q Consensus 48 ~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~ 126 (286)
+.....++.|. ....+||..+.+.+.+..|-. . ..+.....-+..+-..-++.+..+=+.-+-.+++.+-+.|++
T Consensus 126 SVnPkVI~~P~i~aVAkdGIql~~kARVTVRaN---i-~rLVGGAgEeTIiARVGEgIVttIGSa~~hk~VLEnPd~ISk 201 (316)
T PRK13665 126 SVNPKVIETPFIAAVAKDGIEVKAKARVTVRAN---I-DRLVGGAGEETIIARVGEGIVSTIGSSESHKEVLENPDSISK 201 (316)
T ss_pred ccCCeeecCCcchhhcccCeEEEEEEEEEeehh---H-HHHhCCCcceeeEeeecCceeecccCcchHHHHhcCHHHHHH
Confidence 33445566666 778899999988888777753 1 223333343444444445555555566777889999999987
Q ss_pred HHHHHHHHHhhc-cCeEEEEEEEecccCChHHHH
Q 023168 127 AVEEELEKAMSH-YGYEIVQTLIVDIEPDVHVKR 159 (286)
Q Consensus 127 ~i~~~l~~~~~~-~Gi~V~~v~I~~i~~p~~v~~ 159 (286)
.+.+ +-|+. --++|.|+.|-|++..+++-.
T Consensus 202 ~VL~---kGLDagTAFeIlSIDIADvdVG~NIGA 232 (316)
T PRK13665 202 TVLS---KGLDAGTAFEILSIDIADVDVGKNIGA 232 (316)
T ss_pred HHHh---ccCCcCceeEEEEEeeeccccchhhch
Confidence 6654 44554 369999999999999887543
No 34
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=96.68 E-value=0.0065 Score=53.58 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcC
Q 023168 175 NEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENV 225 (286)
Q Consensus 175 ~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~ 225 (286)
...|+.++++.+.+|++++.+.+..|+|+|++.+++|+|++++...++++.
T Consensus 152 ~~~A~~~~~a~~~~Aea~~~~~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~ 202 (262)
T cd03407 152 INAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGL 202 (262)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345677777788888888888888889988888888888888888777754
No 35
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=96.64 E-value=0.019 Score=50.68 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=53.6
Q ss_pred EEEEecccCC-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHh
Q 023168 145 QTLIVDIEPD-VHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSE 223 (286)
Q Consensus 145 ~v~I~~i~~p-~~v~~ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~ 223 (286)
.+.|.++.+- -.+-..+.+.+.+ ...|+.++++.+.+|++++++.+.+|+|+|++.++.|+|++++....++
T Consensus 161 Gi~v~~v~i~~i~~p~~i~~a~~~-------~~~A~q~~~~~~~eae~~a~~~~~~A~~ea~~~~~~A~a~~~~~~~~ae 233 (266)
T cd03404 161 GIEIVGVNLQDADPPEEVQDAFDD-------VNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQ 233 (266)
T ss_pred CeEEEEEEEEeCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhHHHHHH
Confidence 5778887765 2344445543333 3345566777788899999999999999999999999999998776655
Q ss_pred c
Q 023168 224 N 224 (286)
Q Consensus 224 a 224 (286)
+
T Consensus 234 ~ 234 (266)
T cd03404 234 G 234 (266)
T ss_pred H
Confidence 3
No 36
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=96.58 E-value=0.03 Score=49.21 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHH---hhccCeEEEEEEEecccCChHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHhhHH
Q 023168 124 IAKAVEEELEKA---MSHYGYEIVQTLIVDIEPDVHVKRAMNEIN-------AAARLRLAANEKAEAEKILQIKRAEGEA 193 (286)
Q Consensus 124 i~~~i~~~l~~~---~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~~-------~Ae~~~~a~~~~Ae~e~~~~i~~Aeaea 193 (286)
+.+.+.+.+... +.=..+.|.++.+-+ ..-+.+.+.+.++. +|+.++...+.+|++++++.+..|+|++
T Consensus 120 i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~-~v~~a~~~~~~a~q~~~~~~~~ae~~~~~~~~~a~~~a~~~~~~Aea~~ 198 (261)
T TIGR01933 120 TKERLNEIIDNYDLGITVTDVNFQSARPPE-EVKEAFDDVIIAREDEERYINEAEAYANEVVPKARGDAQRIIEEARGYK 198 (261)
T ss_pred HHHHHHHHHhhhcCCcEEEEEEEEecCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444432 344467888877654 23333444333322 2333444456678888889999999999
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHH
Q 023168 194 EAKYLSGLGIARQRQAIVDGLRDS 217 (286)
Q Consensus 194 ea~~~~Aea~a~~~~~~a~a~a~a 217 (286)
++.+++|+|+|++..+.+++...+
T Consensus 199 ~~~~~~a~g~a~~~~~~~~ay~~~ 222 (261)
T TIGR01933 199 ERRINRAKGDVARFTKLLAEYKKA 222 (261)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhC
Confidence 999999999999988877765543
No 37
>PF11978 MVP_shoulder: Shoulder domain; InterPro: IPR021870 This domain is found in the Major Vault Protein and has been called the shoulder domain []. This family includes two bacterial proteins A6FXE2 from SWISSPROT and A1ZGE7 from SWISSPROT. This suggests that some bacteria may possess vault particles. ; PDB: 2ZUO_G 2QZV_B 2ZV5_c 2ZV4_Y.
Probab=96.49 E-value=0.027 Score=42.73 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=68.8
Q ss_pred CcccCCCcEEEEeEEEEEEECc----chHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHH-HHHHHH---
Q 023168 59 ETKTKDNVFVNVVASVQYRALA----DKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEI-AKAVEE--- 130 (286)
Q Consensus 59 ~~~T~D~~~v~v~~~v~yrI~d----~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i-~~~i~~--- 130 (286)
.+-|+|...+.+.+++.|...- |.....+|++.|+-+-+-..+.+.+|..++..+++++..+-..| .+.|..
T Consensus 10 ~VET~DhArL~L~LsYnw~F~v~~~~~~~~~k~F~VpDFVGd~Ck~iaSRIR~aVa~~~Fd~FHknSa~iiR~aVFg~~~ 89 (118)
T PF11978_consen 10 TVETADHARLQLQLSYNWHFDVDRKDPEDAAKLFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSARIIRQAVFGFDE 89 (118)
T ss_dssp EEE-TT-EEEEEEEEEEEEE--TTTHHHHHHHTTSSTTHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHSTS--
T ss_pred EEeecccceeeEEEEEEEEEecCCCChhHHHHhcCCcchHHHHHHHHHHHHHHHHhcCcHHHHcccHHHHHHHHhcCCCC
Confidence 4679999999999999998753 22235789999999888888999999999999999999854433 222211
Q ss_pred --HHH--HHhhccCeEEEEEEEecccCC
Q 023168 131 --ELE--KAMSHYGYEIVQTLIVDIEPD 154 (286)
Q Consensus 131 --~l~--~~~~~~Gi~V~~v~I~~i~~p 154 (286)
.++ -.+..-|+.|.+|.|+++.|-
T Consensus 90 ~~~~r~~~~F~~N~LvIt~vDvqsvEpv 117 (118)
T PF11978_consen 90 NGEVRDGLRFPANNLVITSVDVQSVEPV 117 (118)
T ss_dssp -E--SS-EEETTTTEEEEEEEEEEEEES
T ss_pred CCCccceeEEcCCCeEEEEEeeeEeccC
Confidence 111 134455999999999998763
No 38
>KOG2620 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=96.13 E-value=0.011 Score=51.14 Aligned_cols=53 Identities=26% Similarity=0.216 Sum_probs=39.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHH
Q 023168 165 NAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDS 217 (286)
Q Consensus 165 ~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a 217 (286)
.++|-+|+++|.+|||++++.+...+|.+...+..|.|+|++....|++-+..
T Consensus 178 lesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~ 230 (301)
T KOG2620|consen 178 LESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGT 230 (301)
T ss_pred hhhhhhhHHhhhhhcchhhhHHhhhHHHHHHHHHHHhhHHHHHHHHhhcccch
Confidence 35666777888888888888888777777777777777777777766655433
No 39
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=95.49 E-value=0.16 Score=47.83 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhchhhHH
Q 023168 175 NEKAEAEKILQIKRAEGEAEAKYLSGLGIAR 205 (286)
Q Consensus 175 ~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~ 205 (286)
+.+|++++++.+..|+|.+++.+++|+|+|+
T Consensus 276 ip~A~gea~~ii~~AeAyr~~~i~~AeGda~ 306 (419)
T PRK10930 276 QPRANGQAQRILEEARAYKAQTILEAQGEVA 306 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3344444444444455555555555555443
No 40
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.53 E-value=0.58 Score=45.13 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=47.3
Q ss_pred HhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhcc--------CCCcEEEE
Q 023168 189 AEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEIGAS--------SKSSSVFI 260 (286)
Q Consensus 189 Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~leal~~~~~~--------~~~~~i~l 260 (286)
+++++++++.++.++|++.+.+|+|++++.+.+++++...+.... ..++..-+++|..++++ ...+++.+
T Consensus 411 ~~aea~a~~a~~~~~Aea~r~kG~AEAea~r~lAEa~~~~~~a~~--a~~~~~~vq~Lp~~~~~~~~~~~~i~~~kV~~i 488 (548)
T COG2268 411 AKAEAEAQAAEIKAEAEAIREKGKAEAEAKRALAEAIQVLGDAAA--AELFKALVQALPEVAEEAAQPMKNIDSEKVRVI 488 (548)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhhcccccccceeEEec
Confidence 335777777777888888888999999999999988764332211 12233445666555431 24566666
Q ss_pred cCCCC
Q 023168 261 PHGPG 265 (286)
Q Consensus 261 p~~~~ 265 (286)
|...+
T Consensus 489 ~~~~~ 493 (548)
T COG2268 489 GGANG 493 (548)
T ss_pred CCccc
Confidence 65443
No 41
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=94.13 E-value=0.52 Score=38.25 Aligned_cols=80 Identities=8% Similarity=0.067 Sum_probs=62.4
Q ss_pred CcEEEEeEEEEEEECcchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHH--hHHHHHHHHHHHHHHHhhccCeE
Q 023168 65 NVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFE--QKNEIAKAVEEELEKAMSHYGYE 142 (286)
Q Consensus 65 ~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~--~R~~i~~~i~~~l~~~~~~~Gi~ 142 (286)
+...-+.+.+.|++.|..... .+.. =.+.+++++...+++.+.+++-+ .++.+..++++.++..+..-+ .
T Consensus 76 ~~~~~v~i~i~l~~~n~~~~~---el~~----~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~-~ 147 (159)
T COG1580 76 PKDRYVKIAITLEVANKALLE---ELEE----KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ-V 147 (159)
T ss_pred CCcEEEEEEEEEeeCCHHHHH---HHHH----hhHHHHHHHHHHHHhCCHHHhcCchhHHHHHHHHHHHHHHHHhcCC-e
Confidence 667788889999998842221 1111 23567788999999999999998 799999999999999998855 8
Q ss_pred EEEEEEeccc
Q 023168 143 IVQTLIVDIE 152 (286)
Q Consensus 143 V~~v~I~~i~ 152 (286)
|.+|-+.++.
T Consensus 148 V~dV~fT~fi 157 (159)
T COG1580 148 VKDVLFTNFI 157 (159)
T ss_pred eEEEeeehhh
Confidence 8888877653
No 42
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.26 Score=43.93 Aligned_cols=77 Identities=21% Similarity=0.206 Sum_probs=53.6
Q ss_pred CeEEEEEEEecccCChH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHH
Q 023168 140 GYEIVQTLIVDIEPDVH-VKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSV 218 (286)
Q Consensus 140 Gi~V~~v~I~~i~~p~~-v~~ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~ 218 (286)
+..=..+.|.++..-.- .-+.+.. .......||.++.+.+.+|++++++.++.|+|++++.++.++|.+++
T Consensus 153 ~~~~~Gi~V~~V~i~~i~~p~ev~~-------a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a- 224 (291)
T COG0330 153 AADPWGIKVVDVEIKDIDPPEEVQA-------AMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA- 224 (291)
T ss_pred hhhhcCcEEEEEEEeecCCCHHHHH-------HHHHHHHHHHHHHHHHHHhHhHHhhhhhhhhhhHHHHHHHHHHHHHH-
Confidence 34445566666665432 2222222 22344567778888999999999999999999999999999999988
Q ss_pred HHHHhc
Q 023168 219 LAFSEN 224 (286)
Q Consensus 219 ~~~~~a 224 (286)
+..+.+
T Consensus 225 ~~~~~a 230 (291)
T COG0330 225 EVIARA 230 (291)
T ss_pred HHHHhh
Confidence 444444
No 43
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=90.17 E-value=1.7 Score=36.67 Aligned_cols=32 Identities=25% Similarity=0.046 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhchhhHH
Q 023168 174 ANEKAEAEKILQIKRAEGEAEAKYLSGLGIAR 205 (286)
Q Consensus 174 ~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~ 205 (286)
-+.+|+.++...+..|+.+++.....|+.+++
T Consensus 27 Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~ 58 (198)
T PRK01558 27 IILEAKEEAEEIIAKAEEEAKELKAKAEKEAN 58 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666555555444
No 44
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=89.28 E-value=1.2 Score=37.08 Aligned_cols=25 Identities=8% Similarity=-0.061 Sum_probs=19.8
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHH
Q 023168 193 AEAKYLSGLGIARQRQAIVDGLRDS 217 (286)
Q Consensus 193 aea~~~~Aea~a~~~~~~a~a~a~a 217 (286)
++..+.+|+++|++.+++|+|++++
T Consensus 171 a~~~~~~a~~ea~~~~~~A~gea~a 195 (196)
T cd03401 171 AKFVVEKAEQEKQAAVIRAEGEAEA 195 (196)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3345677888999999999999875
No 45
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=87.65 E-value=16 Score=30.96 Aligned_cols=34 Identities=26% Similarity=0.143 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHH
Q 023168 174 ANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQR 207 (286)
Q Consensus 174 ~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~ 207 (286)
-+.+|+.++...+..|+.+++..+..|+.+++..
T Consensus 32 Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~e 65 (207)
T PRK01005 32 IVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQK 65 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444443
No 46
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=86.84 E-value=18 Score=30.46 Aligned_cols=38 Identities=24% Similarity=0.057 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHH
Q 023168 177 KAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGL 214 (286)
Q Consensus 177 ~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~ 214 (286)
+|+.++...+..|+.+|+..+.+|+.+|+.....|+.+
T Consensus 19 eA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~e 56 (198)
T PRK01558 19 EAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKE 56 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 47
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=86.53 E-value=5.6 Score=31.42 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=43.2
Q ss_pred HHHHHHHHhHccCCCHHHHHH--hHHHHHHHHHHHHHHHhhcc-C-eEEEEEEEecc
Q 023168 99 AYVFDVIRASVPKLNLDAAFE--QKNEIAKAVEEELEKAMSHY-G-YEIVQTLIVDI 151 (286)
Q Consensus 99 ~~~~~~lr~vi~~~~~~el~~--~R~~i~~~i~~~l~~~~~~~-G-i~V~~v~I~~i 151 (286)
+.+++.+-..++..+.+++.+ .|+.|.+++++.++..+.+- | -.|++|-++++
T Consensus 78 P~IRd~ii~lLs~~t~~eL~t~eGke~Lr~eil~~in~~L~~~~g~~~V~~VlFT~F 134 (137)
T PRK05697 78 PLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQETGKPLVVDLLFTKY 134 (137)
T ss_pred HHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHHhhccCCCceeEEeeeee
Confidence 567778888899999999987 89999999999999999753 2 24777777654
No 48
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=85.97 E-value=6.6 Score=31.17 Aligned_cols=51 Identities=14% Similarity=0.266 Sum_probs=41.7
Q ss_pred HHHHHHHHhHccCCCHHHHHH--hHHHHHHHHHHHHHHHhhccCeEEEEEEEecc
Q 023168 99 AYVFDVIRASVPKLNLDAAFE--QKNEIAKAVEEELEKAMSHYGYEIVQTLIVDI 151 (286)
Q Consensus 99 ~~~~~~lr~vi~~~~~~el~~--~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i 151 (286)
+.+++.+-..+++.+.+|+-+ .|+.+.+++.+.++..+.+ | .|.+|-++++
T Consensus 87 p~Ird~ii~~L~~~~~~~l~~~~G~~~Lr~el~~~in~~l~~-g-~V~~Vyft~f 139 (142)
T PRK07718 87 FQVKNIIIEELADMNAEDFKGKKGLEALKEQLKEKINNLMQE-G-KVEKVYITSF 139 (142)
T ss_pred hhhHHHHHHHHHcCCHHHhcChhHHHHHHHHHHHHHHHhhcc-C-ceEEEEEEee
Confidence 356677788888999999997 7999999999999998876 5 5777777654
No 49
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=85.04 E-value=12 Score=27.11 Aligned_cols=51 Identities=10% Similarity=0.196 Sum_probs=41.2
Q ss_pred HHHHHHHHhHccCCCHHHHHH--hHHHHHHHHHHHHHHHhhccCeEEEEEEEecc
Q 023168 99 AYVFDVIRASVPKLNLDAAFE--QKNEIAKAVEEELEKAMSHYGYEIVQTLIVDI 151 (286)
Q Consensus 99 ~~~~~~lr~vi~~~~~~el~~--~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i 151 (286)
+.+++.+...++.++.+++-+ .+..+.+++++.+++.+.+ -.|.+|.+.++
T Consensus 44 ~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~--~~V~~V~ft~f 96 (99)
T PF03748_consen 44 PRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGK--GKVKDVYFTDF 96 (99)
T ss_pred HHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhcc--CcEEEEEEEEE
Confidence 467778888889999999997 7999999999999998854 23777766654
No 50
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=84.67 E-value=2 Score=36.25 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=13.7
Q ss_pred HHhhHHHHHHHhchhhHHHHHHHHHHHH
Q 023168 188 RAEGEAEAKYLSGLGIARQRQAIVDGLR 215 (286)
Q Consensus 188 ~Aeaeaea~~~~Aea~a~~~~~~a~a~a 215 (286)
.|+.++++.+.+|+|++++.+++++|++
T Consensus 155 ~A~~~~~a~i~~A~ge~~a~~~~aea~~ 182 (215)
T cd03403 155 EAEREKRAKIIEAEGERQAAILLAEAAK 182 (215)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444455555555555555544444433
No 51
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.10 E-value=19 Score=30.76 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=54.1
Q ss_pred cCCCcEEEEeEEEEEEECcchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHHHHHHHHHHHHHhhc-cC
Q 023168 62 TKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAMSH-YG 140 (286)
Q Consensus 62 T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~i~~~l~~~~~~-~G 140 (286)
.-||..+.+...+..|-. . ..+.....-+..+-..-.+.+..+-++..-.+++.+-+.|++.+.+ +-++. -.
T Consensus 140 am~gievkakaritvran---i-~rlvggageetviarvgegivstigss~~h~~vlenpd~isktvl~---kgld~gta 212 (328)
T COG4864 140 AMNGIEVKAKARITVRAN---I-ERLVGGAGEETVIARVGEGIVSTIGSSDEHTKVLENPDSISKTVLE---KGLDSGTA 212 (328)
T ss_pred eccceEEEEEEEEEehhh---H-HHHhCCCCchhhhhhhccceeeccCCCcchhhHhcCccHHHHHHHH---ccCCCCce
Confidence 346666655444443332 1 2233333434444444444444444455667888888888877754 33333 36
Q ss_pred eEEEEEEEecccCChHHHHHH
Q 023168 141 YEIVQTLIVDIEPDVHVKRAM 161 (286)
Q Consensus 141 i~V~~v~I~~i~~p~~v~~ai 161 (286)
++|.++.|-+++....+-.-+
T Consensus 213 feilsidiadvdigkniga~l 233 (328)
T COG4864 213 FEILSIDIADVDIGKNIGAKL 233 (328)
T ss_pred eEEEEeeeecccccccccccc
Confidence 899999999999887754433
No 52
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=83.63 E-value=6.9 Score=32.46 Aligned_cols=41 Identities=24% Similarity=0.077 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhch
Q 023168 161 MNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGL 201 (286)
Q Consensus 161 i~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Ae 201 (286)
|-.....+-+.++....++++++...+.+++++++..+..+
T Consensus 6 i~~~I~~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~ 46 (188)
T PRK02292 6 VVEDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILED 46 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555555555555554444333
No 53
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=83.29 E-value=5.6 Score=36.20 Aligned_cols=84 Identities=23% Similarity=0.175 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhc----
Q 023168 176 EKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEIGA---- 251 (286)
Q Consensus 176 ~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~leal~~~~~---- 251 (286)
..||+++...+..|+|||+..+...+|||.+..+.|.++++....-+.++..+. ++ .....-|++|..++.
T Consensus 296 klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~y~--~a---a~l~~lLealp~Ia~~ia~ 370 (428)
T KOG2668|consen 296 KLAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQAYA--QA---AYLRTLLEALPMIAAEIAA 370 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhh--hh---HHHHHHHHHHHHHHHHhcc
Confidence 356677777788888888888888888888888888888877766666654322 22 223457888887764
Q ss_pred --cCCCcEEEEcCCC
Q 023168 252 --SSKSSSVFIPHGP 264 (286)
Q Consensus 252 --~~~~~~i~lp~~~ 264 (286)
++-+++.++.+++
T Consensus 371 plaktnkI~v~s~g~ 385 (428)
T KOG2668|consen 371 PLAKTNKISVWSHGG 385 (428)
T ss_pred chhhcCeEEEEecCC
Confidence 2345666777653
No 54
>KOG3083 consensus Prohibitin [Posttranslational modification, protein turnover, chaperones]
Probab=83.09 E-value=2.5 Score=35.97 Aligned_cols=24 Identities=4% Similarity=-0.089 Sum_probs=13.1
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHH
Q 023168 198 LSGLGIARQRQAIVDGLRDSVLAF 221 (286)
Q Consensus 198 ~~Aea~a~~~~~~a~a~a~a~~~~ 221 (286)
.+|+-++.+..+.|||++++.+.+
T Consensus 201 eKAeQqk~aavIsAEGds~aA~li 224 (271)
T KOG3083|consen 201 EKAEQQKKAAVISAEGDSKAAELI 224 (271)
T ss_pred HHHhhhhhhheeecccchHHHHHH
Confidence 444445555555666666665444
No 55
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=82.19 E-value=18 Score=29.28 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=41.8
Q ss_pred HHHHHHHHhHccCCCHHHHHH--hHHHHHHHHHHHHHHHhhccC--eEEEEEEEecc
Q 023168 99 AYVFDVIRASVPKLNLDAAFE--QKNEIAKAVEEELEKAMSHYG--YEIVQTLIVDI 151 (286)
Q Consensus 99 ~~~~~~lr~vi~~~~~~el~~--~R~~i~~~i~~~l~~~~~~~G--i~V~~v~I~~i 151 (286)
+.+++.+-..++..+.+|+.+ .++.|.+++++.++..+..-+ -.|.+|-++++
T Consensus 103 p~IRd~ii~~Ls~k~~~~L~~~eGk~~Lk~ei~~~in~~l~~~~~~~~V~~VlFt~f 159 (162)
T PRK07021 103 PEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKQTLSQPLVPGQPPQVVTDVLFTAF 159 (162)
T ss_pred HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHhccCCCCceeEEeeeec
Confidence 346677777789999999987 799999999999999887532 35777777654
No 56
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=82.12 E-value=18 Score=29.94 Aligned_cols=83 Identities=14% Similarity=0.201 Sum_probs=56.4
Q ss_pred CcccCCC--cEEEEeEEEEEEECcchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHHHHHHHHHHHHHh
Q 023168 59 ETKTKDN--VFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKAVEEELEKAM 136 (286)
Q Consensus 59 ~~~T~D~--~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~i~~~l~~~~ 136 (286)
.+.++|. ..+-+.+++.|...+++...-+ ..-...++..+...+++.+.+|+- .+..|.+++++.++..+
T Consensus 92 ~vNLaD~~~~r~~vki~l~~e~~d~~l~~EL-------~~r~pqIRD~Ii~~LssKt~~eL~-Gk~~LKeEI~~rIN~iL 163 (181)
T PRK06654 92 RGNTADTPPKTFVVKLALGYAENNKNILNEL-------GRRKVRLKDIIREYFSQKTGQELK-NESQIKAEIKARINSIL 163 (181)
T ss_pred EEEcCCCCCceEEEEEEEEEEcCCHHHHHHH-------HhccHHHHHHHHHHHHhCCHHHHc-CHHHHHHHHHHHHHHhc
Confidence 4455554 4555788888888774322111 122355677788888999999999 88999999999999888
Q ss_pred hccCeEEEEEEEecc
Q 023168 137 SHYGYEIVQTLIVDI 151 (286)
Q Consensus 137 ~~~Gi~V~~v~I~~i 151 (286)
.+- .|.+|-++++
T Consensus 164 ~~G--kV~~VYFTeF 176 (181)
T PRK06654 164 RNG--EIKDIAFTQI 176 (181)
T ss_pred CCC--ceEEEEEEEE
Confidence 763 2555555443
No 57
>KOG3090 consensus Prohibitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.08 E-value=2.9 Score=35.63 Aligned_cols=64 Identities=30% Similarity=0.285 Sum_probs=46.0
Q ss_pred eEEEEEEEecccCChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHH
Q 023168 141 YEIVQTLIVDIEPDVHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQ 206 (286)
Q Consensus 141 i~V~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~ 206 (286)
+.+..+.+. -.|...+..---..+.|+|.+= -..+|+.+++..+.+|+||++++....+|-+..
T Consensus 179 VSiT~l~F~-~efTaAiEaKQvA~QeAqRA~F-~VekA~qek~~~ivrAqGEaksAqliGeAi~nn 242 (290)
T KOG3090|consen 179 VSITELTFG-KEFTAAIEAKQVAAQEAQRAKF-IVEKAEQEKQSAIVRAQGEAKSAQLIGEAIKNN 242 (290)
T ss_pred ceeeeeecC-HHHHHHHHHHHHHHHHHhhhhh-hhHHHHHhhhhhhhhhccchHHHHHHHHHHhCC
Confidence 556666655 4566666555555667776543 456788899999999999999999998887543
No 58
>PLN03086 PRLI-interacting factor K; Provisional
Probab=82.06 E-value=2.9 Score=40.78 Aligned_cols=23 Identities=9% Similarity=0.322 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEcCC
Q 023168 238 LVTQYFDTMKEIGASSKSSSVFIPHG 263 (286)
Q Consensus 238 l~~~~leal~~~~~~~~~~~i~lp~~ 263 (286)
.+.+-|+++... +++..|+||.+
T Consensus 77 ~~~~~~~~~~~~---~~GdKI~LPpS 99 (567)
T PLN03086 77 VFSRIFEAVSFQ---GNGDKIKLPPS 99 (567)
T ss_pred EEEEEeeccccC---CCCCeEEcCHH
Confidence 345566666655 56788999964
No 59
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=81.97 E-value=9.9 Score=32.27 Aligned_cols=27 Identities=30% Similarity=0.256 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhch
Q 023168 175 NEKAEAEKILQIKRAEGEAEAKYLSGL 201 (286)
Q Consensus 175 ~~~Ae~e~~~~i~~Aeaeaea~~~~Ae 201 (286)
+.+|+.++...+..|+.+++..+.+++
T Consensus 44 i~eA~~EAe~ii~~A~~eae~ek~r~~ 70 (207)
T PRK01005 44 IAEAQEEAEKIIRSAEETADQKLKQGE 70 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 60
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=81.75 E-value=12 Score=30.47 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=41.1
Q ss_pred HHHHHHHHhHccCCCHHHHHH--hHHHHHHHHHHHHHHHhhccCeEEEEEEEecc
Q 023168 99 AYVFDVIRASVPKLNLDAAFE--QKNEIAKAVEEELEKAMSHYGYEIVQTLIVDI 151 (286)
Q Consensus 99 ~~~~~~lr~vi~~~~~~el~~--~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i 151 (286)
+.+++.+-..+++.+.+|+.+ .+..|.+++.+.++..+.+- .|.+|.++++
T Consensus 111 p~Ird~i~~~Ls~~~~~~L~~~~Gk~~Lr~ei~~~in~~l~~~--~V~~VlFt~F 163 (166)
T PRK12785 111 PRVTDAFQTYLRELRPSDLNGSAGLFRLKEELLRRVNVALAPA--QVNAVLFKEV 163 (166)
T ss_pred hHHHHHHHHHHHhCCHHHhcChHHHHHHHHHHHHHHHhhcCCC--ceeEEEEEee
Confidence 456677777788899999987 79999999999999988763 3777777664
No 61
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=80.29 E-value=22 Score=26.55 Aligned_cols=36 Identities=31% Similarity=0.283 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHH
Q 023168 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEA 195 (286)
Q Consensus 160 ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea 195 (286)
.|...-.|+.+.+.....|+.++...+..|+.+++.
T Consensus 4 ~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k 39 (103)
T PRK08404 4 VIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKK 39 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566655555555555555555444443333
No 62
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=78.61 E-value=19 Score=27.48 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHh
Q 023168 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLS 199 (286)
Q Consensus 160 ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~ 199 (286)
.|..=+.|+++...-+..|..++...+..|+.+|+..+..
T Consensus 7 GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 7 GIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556777766667777777777777777777666654
No 63
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=78.16 E-value=31 Score=28.15 Aligned_cols=53 Identities=9% Similarity=0.186 Sum_probs=42.0
Q ss_pred HHHHHHHHhHccCCCHHHHHH--hHHHHHHHHHHHHHHHhhcc-C-eEEEEEEEecc
Q 023168 99 AYVFDVIRASVPKLNLDAAFE--QKNEIAKAVEEELEKAMSHY-G-YEIVQTLIVDI 151 (286)
Q Consensus 99 ~~~~~~lr~vi~~~~~~el~~--~R~~i~~~i~~~l~~~~~~~-G-i~V~~v~I~~i 151 (286)
+.+++.+-.++++.+.+|+-+ .++.|.+++.+.++..++.. | -.|.+|.++++
T Consensus 111 p~IRd~i~~~Ls~k~~~~L~~~~gk~~Lr~el~~~i~~~l~~~~g~~~V~~VlFt~f 167 (170)
T PRK05696 111 PLIESALLMTFSSATVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEKVLFTGF 167 (170)
T ss_pred HHHHHHHHHHHhcCCHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCceeEEeeeec
Confidence 457788888899999999987 79999999998888887664 3 24777777654
No 64
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=77.60 E-value=23 Score=29.43 Aligned_cols=52 Identities=13% Similarity=0.239 Sum_probs=42.2
Q ss_pred HHHHHHHHHhHccCCCHHHHHH--hHHHHHHHHHHHHHHHhhccCeEEEEEEEecc
Q 023168 98 QAYVFDVIRASVPKLNLDAAFE--QKNEIAKAVEEELEKAMSHYGYEIVQTLIVDI 151 (286)
Q Consensus 98 ~~~~~~~lr~vi~~~~~~el~~--~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i 151 (286)
.+.+++.+-..+++.+.+|+.+ .++.|.+++.+.++..+.+ | .|.+|-++++
T Consensus 126 ~p~IRD~ii~~Ls~kt~~dL~t~~Gk~~Lk~ei~~~iN~~L~~-g-~V~~VyFT~F 179 (182)
T PRK08455 126 DPVIRDIIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID-G-FIKNVFFTDF 179 (182)
T ss_pred hhHHHHHHHHHHHcCCHHHhcCHHHHHHHHHHHHHHHHHHhcc-C-ceeEEEeEee
Confidence 3457778888889999999997 7999999999999999976 3 4666666654
No 65
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=74.55 E-value=29 Score=29.41 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=57.2
Q ss_pred CCcccCCCcEEEEeEEEEEEECcchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHH--hHHHHHHHHHHHHHHH
Q 023168 58 CETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFE--QKNEIAKAVEEELEKA 135 (286)
Q Consensus 58 ~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~--~R~~i~~~i~~~l~~~ 135 (286)
.++.|+||..+.+-..+.-.-. --......|+......+...++++++++++. --+.|+.+|....+..
T Consensus 100 vdvkTkDGy~lRv~~i~~T~~r---------a~~sq~~~IRk~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~I 170 (203)
T PRK04057 100 VDVTTKDGYKVRVKPVALTTKR---------ARTSQKHAIRKIMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKI 170 (203)
T ss_pred EEEEcCCCCEEEEEEEEEEchh---------hhhhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhhc
Confidence 3679999998887665432211 0112347888999999999999999999997 3566777777666665
Q ss_pred hhccCeEEEEEEEe
Q 023168 136 MSHYGYEIVQTLIV 149 (286)
Q Consensus 136 ~~~~Gi~V~~v~I~ 149 (286)
.--.-++|..+.+.
T Consensus 171 yPlr~veIrKvkvl 184 (203)
T PRK04057 171 YPLRRVEIRKSKVL 184 (203)
T ss_pred cCcceEEEEEEEEE
Confidence 44445666666554
No 66
>PTZ00491 major vault protein; Provisional
Probab=74.10 E-value=11 Score=38.56 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=8.1
Q ss_pred HHhhHHHHHHHhchhh
Q 023168 188 RAEGEAEAKYLSGLGI 203 (286)
Q Consensus 188 ~Aeaeaea~~~~Aea~ 203 (286)
+|++.|+++.+++||+
T Consensus 720 ~a~a~aea~~ie~e~~ 735 (850)
T PTZ00491 720 EALAEAEARLIEAEAE 735 (850)
T ss_pred HHHHHHHHHhhhhhhH
Confidence 4444555555555554
No 67
>PRK09098 type III secretion system protein HrpB; Validated
Probab=70.99 E-value=26 Score=30.31 Aligned_cols=33 Identities=24% Similarity=0.035 Sum_probs=19.7
Q ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhH
Q 023168 172 LAANEKAEAEKILQIKRAEGEAEAKYLSGLGIA 204 (286)
Q Consensus 172 ~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a 204 (286)
+.-+.+|+.+++..+..|+++|++.+..|+.+.
T Consensus 42 ~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~ 74 (233)
T PRK09098 42 DAVLAAARARAERIVAEARAQAEAILEAARREA 74 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666666666666666666666665443
No 68
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=70.86 E-value=37 Score=27.21 Aligned_cols=8 Identities=13% Similarity=0.368 Sum_probs=3.5
Q ss_pred HHHHHHhH
Q 023168 114 LDAAFEQK 121 (286)
Q Consensus 114 ~~el~~~R 121 (286)
+..++..|
T Consensus 47 i~~~l~~R 54 (156)
T CHL00118 47 LLKVLDER 54 (156)
T ss_pred HHHHHHHH
Confidence 44444433
No 69
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=70.03 E-value=22 Score=26.45 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhh
Q 023168 161 MNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGI 203 (286)
Q Consensus 161 i~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~ 203 (286)
|..-+.|+.+...-+.+|..++...+..|+.+|+..+.....+
T Consensus 6 Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~ 48 (105)
T PF03179_consen 6 IQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAE 48 (105)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455655555566666666666666666665555444333
No 70
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=69.96 E-value=52 Score=25.92 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=8.0
Q ss_pred CHHHHHHhHH-HHHHHH
Q 023168 113 NLDAAFEQKN-EIAKAV 128 (286)
Q Consensus 113 ~~~el~~~R~-~i~~~i 128 (286)
++..++..|. .|...+
T Consensus 31 Pi~~~l~~R~~~I~~~l 47 (141)
T PRK08476 31 PLLKFMDNRNASIKNDL 47 (141)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 4455666554 344444
No 71
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=69.48 E-value=15 Score=27.32 Aligned_cols=44 Identities=16% Similarity=0.043 Sum_probs=30.7
Q ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHH
Q 023168 173 AANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRD 216 (286)
Q Consensus 173 a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~ 216 (286)
..+..||.++...+..|+..+...+..|..+|+..+.....+.+
T Consensus 7 q~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e 50 (105)
T PF03179_consen 7 QQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAE 50 (105)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888887777777766554444443
No 72
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=69.14 E-value=47 Score=25.06 Aligned_cols=44 Identities=25% Similarity=0.092 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhh
Q 023168 160 AMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGI 203 (286)
Q Consensus 160 ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~ 203 (286)
++.....|+......|.+|+-++.+.+..|+.++...+..|+.+
T Consensus 8 vl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~e 51 (108)
T COG2811 8 VLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEE 51 (108)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456666666666666666666666655555555444433
No 73
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=69.00 E-value=68 Score=27.82 Aligned_cols=36 Identities=31% Similarity=0.244 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHH
Q 023168 174 ANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQA 209 (286)
Q Consensus 174 ~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~ 209 (286)
+..+|+.++...+..|+.++++.+..|+.+.+..+.
T Consensus 80 A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~ 115 (246)
T TIGR03321 80 AKEEAQAERQRLLDEAREEADEIREKWQEALRREQA 115 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666667777777766666655444333
No 74
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=68.97 E-value=42 Score=27.32 Aligned_cols=33 Identities=15% Similarity=-0.064 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHH
Q 023168 174 ANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQ 206 (286)
Q Consensus 174 ~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~ 206 (286)
+..+|+..+...+.+|+.++++.+..|+...+.
T Consensus 97 A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~ 129 (167)
T PRK08475 97 AKKEAYILTQKIEKQTKDDIENLIKSFEELMEF 129 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555544333
No 75
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=66.79 E-value=54 Score=25.85 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 023168 178 AEAEKILQIKRAEGEAEAK 196 (286)
Q Consensus 178 Ae~e~~~~i~~Aeaeaea~ 196 (286)
|+.++...+..|+.+.++.
T Consensus 86 A~~ea~~~~~~A~~~~~~~ 104 (141)
T PRK08476 86 AKEEAEKKIEAKKAELESK 104 (141)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 76
>PRK09098 type III secretion system protein HrpB; Validated
Probab=66.34 E-value=49 Score=28.58 Aligned_cols=8 Identities=13% Similarity=0.268 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 023168 242 YFDTMKEI 249 (286)
Q Consensus 242 ~leal~~~ 249 (286)
-.+++...
T Consensus 139 v~~al~~~ 146 (233)
T PRK09098 139 AAQTLERV 146 (233)
T ss_pred HHHHHHHH
Confidence 33444433
No 77
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=66.30 E-value=68 Score=25.86 Aligned_cols=12 Identities=42% Similarity=0.927 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 023168 236 MVLVTQYFDTMK 247 (286)
Q Consensus 236 ~~l~~~~leal~ 247 (286)
..+..+|.+..+
T Consensus 129 v~iAsk~~~~~~ 140 (154)
T PRK06568 129 IKLVSEYFQSVK 140 (154)
T ss_pred HHHHHHHHHHhc
Confidence 445566666543
No 78
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=66.29 E-value=68 Score=25.82 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=8.0
Q ss_pred CHHHHHHhHH-HHHHHHH
Q 023168 113 NLDAAFEQKN-EIAKAVE 129 (286)
Q Consensus 113 ~~~el~~~R~-~i~~~i~ 129 (286)
++..++..|. .|...+.
T Consensus 32 pi~~~l~~R~~~I~~~l~ 49 (164)
T PRK14471 32 PILGAVKEREDSIKNALA 49 (164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4555666443 3444443
No 79
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=65.77 E-value=54 Score=26.27 Aligned_cols=27 Identities=26% Similarity=-0.007 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhchhh
Q 023168 177 KAEAEKILQIKRAEGEAEAKYLSGLGI 203 (286)
Q Consensus 177 ~Ae~e~~~~i~~Aeaeaea~~~~Aea~ 203 (286)
+|+..+...+..|+.++++.+..|+.+
T Consensus 83 ~a~~~~~~i~~~A~~ea~~~~~~a~~~ 109 (159)
T PRK13461 83 KAENVYEEIVKEAHEEADLIIERAKLE 109 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 80
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=65.42 E-value=74 Score=25.95 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=9.0
Q ss_pred CHHHHHHhHH-HHHHHHH
Q 023168 113 NLDAAFEQKN-EIAKAVE 129 (286)
Q Consensus 113 ~~~el~~~R~-~i~~~i~ 129 (286)
++..++..|. .|...+.
T Consensus 42 pi~~~l~~R~~~I~~~l~ 59 (175)
T PRK14472 42 PILSALEEREKGIQSSID 59 (175)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 5666777554 4444443
No 81
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=65.04 E-value=51 Score=27.85 Aligned_cols=9 Identities=0% Similarity=0.109 Sum_probs=4.5
Q ss_pred CHHHHHHhH
Q 023168 113 NLDAAFEQK 121 (286)
Q Consensus 113 ~~~el~~~R 121 (286)
++..++..|
T Consensus 72 Pi~~~L~~R 80 (205)
T PRK06231 72 PTQRFLNKR 80 (205)
T ss_pred HHHHHHHHH
Confidence 445555544
No 82
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=64.80 E-value=94 Score=27.13 Aligned_cols=33 Identities=15% Similarity=0.121 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHH
Q 023168 174 ANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQ 206 (286)
Q Consensus 174 ~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~ 206 (286)
+..+|+.++...+..|+.++++.+..+..+.+.
T Consensus 80 A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~ 112 (250)
T PRK14474 80 AQEAADEQRQHLLNEAREDVATARDEWLEQLER 112 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666555433
No 83
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=64.15 E-value=62 Score=24.65 Aligned_cols=39 Identities=10% Similarity=0.039 Sum_probs=28.3
Q ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHH
Q 023168 172 LAANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAI 210 (286)
Q Consensus 172 ~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~ 210 (286)
.+....||.++...+..|+..+...+..|+.+|+.-+..
T Consensus 8 IQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~ 46 (113)
T TIGR01147 8 IQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEK 46 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567778888888888887787777777777765554
No 84
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=63.79 E-value=90 Score=26.37 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=9.6
Q ss_pred CHHHHHHhHH-HHHHHHHH
Q 023168 113 NLDAAFEQKN-EIAKAVEE 130 (286)
Q Consensus 113 ~~~el~~~R~-~i~~~i~~ 130 (286)
++..++..|. .|...+.+
T Consensus 77 pI~~vLe~R~~~I~~~L~~ 95 (204)
T PRK09174 77 RIGGIIETRRDRIAQDLDQ 95 (204)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777553 44444443
No 85
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=63.50 E-value=59 Score=26.82 Aligned_cols=31 Identities=23% Similarity=0.045 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhchhhHH
Q 023168 175 NEKAEAEKILQIKRAEGEAEAKYLSGLGIAR 205 (286)
Q Consensus 175 ~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~ 205 (286)
..+|+..+...+..|+.++++.+..|+...+
T Consensus 100 ~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie 130 (184)
T CHL00019 100 YSEIEREKENLINQAKEDLERLENYKNETIR 130 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555555544433
No 86
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=63.13 E-value=63 Score=27.32 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=2.1
Q ss_pred HhhHHH
Q 023168 189 AEGEAE 194 (286)
Q Consensus 189 Aeaeae 194 (286)
++.+++
T Consensus 143 a~~ea~ 148 (204)
T PRK09174 143 IEASLE 148 (204)
T ss_pred HHHHHH
Confidence 333333
No 87
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=62.75 E-value=63 Score=26.37 Aligned_cols=25 Identities=24% Similarity=0.113 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhchh
Q 023168 178 AEAEKILQIKRAEGEAEAKYLSGLG 202 (286)
Q Consensus 178 Ae~e~~~~i~~Aeaeaea~~~~Aea 202 (286)
|+..+...+..|+.++++.+..|+.
T Consensus 97 a~~~~~~~~~~A~~ea~~~~~~a~~ 121 (175)
T PRK14472 97 AEKLRAEITEKAHTEAKKMIASAKE 121 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444433
No 88
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=62.43 E-value=65 Score=26.29 Aligned_cols=17 Identities=12% Similarity=0.399 Sum_probs=8.6
Q ss_pred CCHHHHHHhHH-HHHHHH
Q 023168 112 LNLDAAFEQKN-EIAKAV 128 (286)
Q Consensus 112 ~~~~el~~~R~-~i~~~i 128 (286)
-++.+++..|. .|.+.+
T Consensus 41 ~pi~~~l~~R~~~I~~~l 58 (173)
T PRK13453 41 GPLKDVMDKRERDINRDI 58 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 35666666543 343333
No 89
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=62.32 E-value=65 Score=26.24 Aligned_cols=32 Identities=16% Similarity=0.047 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhchhhHH
Q 023168 174 ANEKAEAEKILQIKRAEGEAEAKYLSGLGIAR 205 (286)
Q Consensus 174 ~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~ 205 (286)
+..+|+..+...+..|+.++++.+..|+.+.+
T Consensus 91 A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie 122 (173)
T PRK13460 91 AKSDALKLKNKLLEETNNEVKAQKDQAVKEIE 122 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555544433
No 90
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=62.12 E-value=84 Score=25.45 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=9.3
Q ss_pred CHHHHHHhH-HHHHHHHHH
Q 023168 113 NLDAAFEQK-NEIAKAVEE 130 (286)
Q Consensus 113 ~~~el~~~R-~~i~~~i~~ 130 (286)
++..++..| +.|...+.+
T Consensus 34 pi~~~le~R~~~I~~~l~~ 52 (167)
T PRK14475 34 ALAGALDAYAAKIQAELDE 52 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 455666644 445554443
No 91
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=61.29 E-value=72 Score=25.68 Aligned_cols=17 Identities=6% Similarity=0.239 Sum_probs=8.0
Q ss_pred CHHHHHHhHH-HHHHHHH
Q 023168 113 NLDAAFEQKN-EIAKAVE 129 (286)
Q Consensus 113 ~~~el~~~R~-~i~~~i~ 129 (286)
++..++..|. .|...+.
T Consensus 32 pi~~~l~~R~~~I~~~l~ 49 (164)
T PRK14473 32 PVLNLLNERTRRIEESLR 49 (164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4555666443 3444433
No 92
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=60.80 E-value=76 Score=26.16 Aligned_cols=10 Identities=10% Similarity=0.428 Sum_probs=5.7
Q ss_pred CHHHHHHhHH
Q 023168 113 NLDAAFEQKN 122 (286)
Q Consensus 113 ~~~el~~~R~ 122 (286)
++..++..|.
T Consensus 55 PI~~~l~~R~ 64 (181)
T PRK13454 55 RIGAVLAERQ 64 (181)
T ss_pred HHHHHHHHHH
Confidence 4556666554
No 93
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=60.02 E-value=65 Score=27.96 Aligned_cols=38 Identities=11% Similarity=-0.118 Sum_probs=20.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhchhh
Q 023168 166 AAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGLGI 203 (286)
Q Consensus 166 ~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~ 203 (286)
.|+.+++..+.+|+.+..+.+..|+.+.+..+..|..+
T Consensus 83 eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~ 120 (246)
T TIGR03321 83 EAQAERQRLLDEAREEADEIREKWQEALRREQAALSDE 120 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555666666666666665555555554433
No 94
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=59.96 E-value=80 Score=25.03 Aligned_cols=29 Identities=17% Similarity=-0.024 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhchhh
Q 023168 175 NEKAEAEKILQIKRAEGEAEAKYLSGLGI 203 (286)
Q Consensus 175 ~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~ 203 (286)
..+|+..+...+..|+.++++.+..|+.+
T Consensus 80 ~~ea~~~~~~~~~~a~~ea~~~~~~a~~~ 108 (156)
T PRK05759 80 KKRAAQIIEEAKAEAEAEAARIKAQAQAE 108 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555544444443
No 95
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=59.91 E-value=94 Score=25.30 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=5.7
Q ss_pred CHHHHHHhHH
Q 023168 113 NLDAAFEQKN 122 (286)
Q Consensus 113 ~~~el~~~R~ 122 (286)
++..++..|.
T Consensus 40 pi~~~l~~R~ 49 (173)
T PRK13460 40 VILKALDERA 49 (173)
T ss_pred HHHHHHHHHH
Confidence 4556666553
No 96
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=59.83 E-value=94 Score=25.30 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=11.1
Q ss_pred cCCCHHHHHHhHH-HHHHHHH
Q 023168 110 PKLNLDAAFEQKN-EIAKAVE 129 (286)
Q Consensus 110 ~~~~~~el~~~R~-~i~~~i~ 129 (286)
.-.++..++.+|. .|...+.
T Consensus 40 l~kpI~~~l~~R~~~I~~~l~ 60 (174)
T PRK07352 40 GRGFLGKILEERREAILQALK 60 (174)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 3345777777654 4444443
No 97
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=59.52 E-value=57 Score=24.63 Aligned_cols=24 Identities=29% Similarity=0.115 Sum_probs=11.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhHH
Q 023168 170 LRLAANEKAEAEKILQIKRAEGEA 193 (286)
Q Consensus 170 ~~~a~~~~Ae~e~~~~i~~Aeaea 193 (286)
++...+..|..++...+..|+.++
T Consensus 29 e~~~~i~eAr~eareiieeaE~eA 52 (108)
T COG2811 29 EAEQIIKEAREEAREIIEEAEEEA 52 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555544444444443
No 98
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=58.66 E-value=93 Score=24.86 Aligned_cols=29 Identities=31% Similarity=0.165 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhchhh
Q 023168 175 NEKAEAEKILQIKRAEGEAEAKYLSGLGI 203 (286)
Q Consensus 175 ~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~ 203 (286)
...|+.++...+..|+.+++..+..+..+
T Consensus 63 L~~A~~ea~~ii~~A~~~a~~~~~~a~~~ 91 (159)
T PRK09173 63 RKEAEKEAADIVAAAEREAEALTAEAKRK 91 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445554444444443333
No 99
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=57.99 E-value=42 Score=28.06 Aligned_cols=27 Identities=30% Similarity=0.174 Sum_probs=15.8
Q ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHH
Q 023168 172 LAANEKAEAEKILQIKRAEGEAEAKYL 198 (286)
Q Consensus 172 ~a~~~~Ae~e~~~~i~~Aeaeaea~~~ 198 (286)
+.-+..|+.++.+.+..|+.++++.+.
T Consensus 33 ~~IL~~A~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 33 REILEDARQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666666666655
No 100
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=57.39 E-value=21 Score=31.86 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhccCeEE--EEEEEecccCC-hHHHHHHHHHHHHHHHHHHhHHHHHHHHH--------HHHHHHhhHHHH
Q 023168 127 AVEEELEKAMSHYGYEI--VQTLIVDIEPD-VHVKRAMNEINAAARLRLAANEKAEAEKI--------LQIKRAEGEAEA 195 (286)
Q Consensus 127 ~i~~~l~~~~~~~Gi~V--~~v~I~~i~~p-~~v~~ai~~~~~Ae~~~~a~~~~Ae~e~~--------~~i~~Aeaeaea 195 (286)
.+...+...+..- +.- ..+.|.++.+- ..+-+.+.+.+ .+.+||.++. +...+||+++.+
T Consensus 125 ~I~~~I~~~l~e~-l~~y~~GI~I~dV~I~~id~P~~V~~af--------erM~aER~k~~~~~~~~~~~~~~ae~~~~~ 195 (280)
T cd03406 125 QIDENLKLALQKD-LTRMAPGLEIQAVRVTKPKIPEAIRRNY--------ELMEAEKTKLLIAIQKQKVVEKEAETERKK 195 (280)
T ss_pred HHHHHHHHHHHHH-HhccCCCcEEEEEEEEecCCCHHHHHHH--------HHHHHHHHhhhhccchhHHHHHHhhHHHHH
Confidence 4555555555542 121 26788888764 34555554432 1234555555 778889999999
Q ss_pred HHHhchhhHHH
Q 023168 196 KYLSGLGIARQ 206 (286)
Q Consensus 196 ~~~~Aea~a~~ 206 (286)
++.+|+++|+-
T Consensus 196 ~~~~a~~~~~~ 206 (280)
T cd03406 196 AVIEAEKVAQV 206 (280)
T ss_pred HHHHHHHHhhH
Confidence 99988888654
No 101
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=56.40 E-value=60 Score=23.07 Aligned_cols=28 Identities=32% Similarity=0.224 Sum_probs=11.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhHHH
Q 023168 167 AARLRLAANEKAEAEKILQIKRAEGEAE 194 (286)
Q Consensus 167 Ae~~~~a~~~~Ae~e~~~~i~~Aeaeae 194 (286)
++.+.+..+..|+.++...+..|+.+++
T Consensus 7 ae~~~~~~l~~A~~ea~~Ii~~A~~~A~ 34 (85)
T TIGR02926 7 AEEDAEELIEEAEEERKQRIAEAREEAR 34 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444443333
No 102
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=55.96 E-value=1.1e+02 Score=24.73 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 023168 177 KAEAEKILQIKRAEGEAE 194 (286)
Q Consensus 177 ~Ae~e~~~~i~~Aeaeae 194 (286)
+|+.+++..+..|+.+++
T Consensus 67 ~Ar~EA~~Ii~~A~~~a~ 84 (154)
T PRK06568 67 KLETLRSQMIEESNEVTK 84 (154)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344443333333333
No 103
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=55.82 E-value=1.2e+02 Score=25.06 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=12.0
Q ss_pred cCCCHHHHHHhHH-HHHHHHHH
Q 023168 110 PKLNLDAAFEQKN-EIAKAVEE 130 (286)
Q Consensus 110 ~~~~~~el~~~R~-~i~~~i~~ 130 (286)
+--++..++..|. .|...+.+
T Consensus 45 l~kPI~~~l~~R~~~I~~~l~~ 66 (184)
T CHL00019 45 GKGVLSDLLDNRKQTILNTIRN 66 (184)
T ss_pred hHhHHHHHHHHHHHHHHHHHHH
Confidence 3357778888554 44444443
No 104
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=55.02 E-value=53 Score=27.56 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=48.1
Q ss_pred CcccCCCcEEEEeEEEEEEECcchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHh--HHHHHHHHHHHHHHHh
Q 023168 59 ETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQ--KNEIAKAVEEELEKAM 136 (286)
Q Consensus 59 ~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~--R~~i~~~i~~~l~~~~ 136 (286)
++.|+||..+.+-....=+= + .-......|+......+.+.++..++++++.. -+.++.+|....+...
T Consensus 107 dvkT~DGy~lRvf~i~fT~~------r---a~~sq~~~IRk~m~~ii~~~~~~~~~~e~V~~li~~~i~~eI~k~~k~Iy 177 (194)
T PF01015_consen 107 DVKTKDGYLLRVFCIAFTKK------R---AKSSQIKAIRKKMVEIITEEASELDLKELVKKLIPGSIGKEIEKACKKIY 177 (194)
T ss_dssp EEEETTTEEEEEEEEEEE-------------TCHHHHHHHHHHHHHHHHHCCTSHHHHHHHHHCTTHHHHHHHHHHCTT-
T ss_pred EEEcCCCcEEEEEEEEEEee------c---ccchHHHHHHHHHHHHHHHHhccCcHHHHHHHHccchHHHHHHHHhcccc
Confidence 67899998876644432111 0 01122468899999999999999999999973 4556666655544433
Q ss_pred hccCeEEEEE
Q 023168 137 SHYGYEIVQT 146 (286)
Q Consensus 137 ~~~Gi~V~~v 146 (286)
--.-++|.-+
T Consensus 178 Pl~~v~IrKv 187 (194)
T PF01015_consen 178 PLRNVEIRKV 187 (194)
T ss_dssp -EEEEEEEEE
T ss_pred ccceEEEEEE
Confidence 2223444333
No 105
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=54.16 E-value=1.2e+02 Score=24.66 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=5.2
Q ss_pred CHHHHHHhHH
Q 023168 113 NLDAAFEQKN 122 (286)
Q Consensus 113 ~~~el~~~R~ 122 (286)
++.+++..|.
T Consensus 46 Pi~~~l~~R~ 55 (167)
T PRK08475 46 PLKNFYKSRI 55 (167)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 106
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=53.87 E-value=1.1e+02 Score=24.36 Aligned_cols=10 Identities=10% Similarity=0.464 Sum_probs=5.2
Q ss_pred CHHHHHHhHH
Q 023168 113 NLDAAFEQKN 122 (286)
Q Consensus 113 ~~~el~~~R~ 122 (286)
++..++..|.
T Consensus 29 pi~~~l~~R~ 38 (159)
T PRK13461 29 KIKAVIDSRQ 38 (159)
T ss_pred HHHHHHHHHH
Confidence 4555565443
No 107
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=53.31 E-value=99 Score=27.00 Aligned_cols=35 Identities=11% Similarity=-0.074 Sum_probs=16.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhch
Q 023168 167 AARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGL 201 (286)
Q Consensus 167 Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Ae 201 (286)
|+.+++..+.+|+.+..+.+.+++.+.+..+..+.
T Consensus 84 A~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~ 118 (250)
T PRK14474 84 ADEQRQHLLNEAREDVATARDEWLEQLEREKQEFF 118 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555555544444444443
No 108
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=52.77 E-value=1.1e+02 Score=23.79 Aligned_cols=8 Identities=13% Similarity=0.405 Sum_probs=3.9
Q ss_pred HHHHHHhH
Q 023168 114 LDAAFEQK 121 (286)
Q Consensus 114 ~~el~~~R 121 (286)
+..++..|
T Consensus 30 i~~~l~~R 37 (140)
T PRK07353 30 VGKVVEER 37 (140)
T ss_pred HHHHHHHH
Confidence 44555544
No 109
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=51.74 E-value=1.2e+02 Score=24.15 Aligned_cols=8 Identities=0% Similarity=0.426 Sum_probs=4.0
Q ss_pred HHHHHHhH
Q 023168 114 LDAAFEQK 121 (286)
Q Consensus 114 ~~el~~~R 121 (286)
+..++..|
T Consensus 27 i~~~l~~R 34 (159)
T PRK09173 27 IARSLDAR 34 (159)
T ss_pred HHHHHHHH
Confidence 45555543
No 110
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=51.70 E-value=98 Score=23.02 Aligned_cols=29 Identities=24% Similarity=0.075 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhchhhHH
Q 023168 177 KAEAEKILQIKRAEGEAEAKYLSGLGIAR 205 (286)
Q Consensus 177 ~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~ 205 (286)
+|+......+..|+.+++..+..|+.+.+
T Consensus 36 ~A~k~~~eii~eA~~eA~~ile~Ak~eie 64 (103)
T PRK08404 36 EAKKIEEEIIKKAEEEAQKLIEKKKKEGE 64 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555544433
No 111
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=50.76 E-value=3.5e+02 Score=29.32 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=18.2
Q ss_pred EEcCCCCchhhHHHHHHHHHHhhhhh
Q 023168 259 FIPHGPGAVKDIATQIREGLLQANQV 284 (286)
Q Consensus 259 ~lp~~~~~~~~~~~~~~~~~~~~~~~ 284 (286)
=+|..+..+..|.+.|+..+...+|+
T Consensus 1505 ~lp~tpeqi~~L~~~I~e~v~sL~nV 1530 (1758)
T KOG0994|consen 1505 ELPLTPEQIQQLTGEIQERVASLPNV 1530 (1758)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcccH
Confidence 45667777777777777777766654
No 112
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=49.86 E-value=1.3e+02 Score=26.65 Aligned_cols=29 Identities=17% Similarity=-0.070 Sum_probs=13.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhHHHHHHH
Q 023168 170 LRLAANEKAEAEKILQIKRAEGEAEAKYL 198 (286)
Q Consensus 170 ~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~ 198 (286)
+..+-+.+|+.+....+..|+.++++.+.
T Consensus 89 ea~~~l~~a~~q~e~~~~ea~~e~e~~~~ 117 (281)
T PRK06669 89 EASSIIEKLQMQIEREQEEWEEELERLIE 117 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444433
No 113
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=48.99 E-value=1.2e+02 Score=23.42 Aligned_cols=6 Identities=17% Similarity=0.423 Sum_probs=2.3
Q ss_pred HHHHHH
Q 023168 157 VKRAMN 162 (286)
Q Consensus 157 v~~ai~ 162 (286)
+...|+
T Consensus 30 i~~~l~ 35 (140)
T PRK07353 30 VGKVVE 35 (140)
T ss_pred HHHHHH
Confidence 333333
No 114
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=47.97 E-value=1.4e+02 Score=23.63 Aligned_cols=9 Identities=22% Similarity=0.405 Sum_probs=4.1
Q ss_pred CHHHHHHhH
Q 023168 113 NLDAAFEQK 121 (286)
Q Consensus 113 ~~~el~~~R 121 (286)
++..++..|
T Consensus 28 pi~~~l~~R 36 (156)
T PRK05759 28 PIMKALEER 36 (156)
T ss_pred HHHHHHHHH
Confidence 344445544
No 115
>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []. This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].
Probab=47.91 E-value=77 Score=26.43 Aligned_cols=20 Identities=15% Similarity=0.049 Sum_probs=9.2
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 023168 168 ARLRLAANEKAEAEKILQIK 187 (286)
Q Consensus 168 e~~~~a~~~~Ae~e~~~~i~ 187 (286)
+++.++-+..|+.+++..+.
T Consensus 40 ~~qA~~Il~~Ae~eAe~l~~ 59 (191)
T PF06188_consen 40 RQQAEQILQQAEEEAEALLE 59 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334455555555444
No 116
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=47.12 E-value=1.8e+02 Score=24.73 Aligned_cols=87 Identities=21% Similarity=0.308 Sum_probs=58.0
Q ss_pred eecCCCcccCCCcEEEEeEEEEEEECcchHhhhhcccc-ChHHHHHHHHHHHHHhHccCCCHHHHHH--hHHHHHHHHHH
Q 023168 54 LDVKCETKTKDNVFVNVVASVQYRALADKAYDAFYKLS-NTRGQIQAYVFDVIRASVPKLNLDAAFE--QKNEIAKAVEE 130 (286)
Q Consensus 54 ~~~~~~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~-~~~~~l~~~~~~~lr~vi~~~~~~el~~--~R~~i~~~i~~ 130 (286)
++...++.|+||..+.|-+.+.= . .... .-...|+......+.+..+..++++++. --+.+.++|.+
T Consensus 104 Idai~dVkTkDGy~~RV~~~~~T---~-------~ra~tSqk~aIRk~M~eii~~~a~e~~f~~fv~~li~g~i~~~I~~ 173 (214)
T COG1890 104 IDAIVDVKTKDGYVLRVKAMAFT---R-------RRAKTSQKRAIRKIMFEIIEEKASELTFEEFVQELIPGRIAAEIEE 173 (214)
T ss_pred eeeEEEEEecCCcEEEEEEEEEE---e-------hhcccchHHHHHHHHHHHHHHHhccCCHHHHHHHHhhhhHHHHHHH
Confidence 33344889999998887655421 1 0111 2357889999999999999999999997 34666666666
Q ss_pred HHHHHhhccCeEEEEEEEec
Q 023168 131 ELEKAMSHYGYEIVQTLIVD 150 (286)
Q Consensus 131 ~l~~~~~~~Gi~V~~v~I~~ 150 (286)
.-+...-=.-++|..+.+..
T Consensus 174 ~akkIyPLr~veIrK~kvl~ 193 (214)
T COG1890 174 AAKKIYPLRKVEIRKSKVLK 193 (214)
T ss_pred HhhhcccchheEEEeeeeec
Confidence 55444333357777766654
No 117
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=46.18 E-value=1.6e+02 Score=23.82 Aligned_cols=6 Identities=0% Similarity=-0.064 Sum_probs=2.3
Q ss_pred HHHHHH
Q 023168 242 YFDTMK 247 (286)
Q Consensus 242 ~leal~ 247 (286)
|-|.|.
T Consensus 126 ~~~~~i 131 (155)
T PRK06569 126 KSEAII 131 (155)
T ss_pred HHHHHH
Confidence 333333
No 118
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=45.20 E-value=1.6e+02 Score=23.69 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=7.4
Q ss_pred CHHHHHHhH-HHHHHHHH
Q 023168 113 NLDAAFEQK-NEIAKAVE 129 (286)
Q Consensus 113 ~~~el~~~R-~~i~~~i~ 129 (286)
++..++..| ..|.+.+.
T Consensus 30 pi~~~l~~R~~~I~~~l~ 47 (161)
T COG0711 30 PILKALDERQAKIADDLA 47 (161)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555543 33444443
No 119
>PRK15322 invasion protein OrgB; Provisional
Probab=42.93 E-value=2.1e+02 Score=24.25 Aligned_cols=24 Identities=4% Similarity=0.195 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEcCCC
Q 023168 238 LVTQYFDTMKEIGASSKSSSVFIPHGP 264 (286)
Q Consensus 238 l~~~~leal~~~~~~~~~~~i~lp~~~ 264 (286)
+...|+-.++..- ..--++||.+.
T Consensus 98 ~le~Wl~~l~~~~---~pL~l~lP~~a 121 (210)
T PRK15322 98 VLDEWLRDFDKPE---GQLFLTLPVNA 121 (210)
T ss_pred HHHHHHHhCcccc---CceeEecChhh
Confidence 3455666666542 44568888764
No 120
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=42.76 E-value=1.9e+02 Score=23.74 Aligned_cols=18 Identities=17% Similarity=0.387 Sum_probs=10.0
Q ss_pred CHHHHHHhHH-HHHHHHHH
Q 023168 113 NLDAAFEQKN-EIAKAVEE 130 (286)
Q Consensus 113 ~~~el~~~R~-~i~~~i~~ 130 (286)
++..++.+|. .|...+.+
T Consensus 51 ~v~~~L~~R~~~I~~~l~~ 69 (184)
T PRK13455 51 MIGGMLDKRAEGIRSELEE 69 (184)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3577777554 45444443
No 121
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=41.40 E-value=3e+02 Score=26.29 Aligned_cols=15 Identities=13% Similarity=0.452 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHh
Q 023168 236 MVLVTQYFDTMKEIG 250 (286)
Q Consensus 236 ~~l~~~~leal~~~~ 250 (286)
..+-.++++-+..+.
T Consensus 144 ~~lId~~i~~l~~~~ 158 (445)
T PRK13428 144 SATVDRFLDELDAMA 158 (445)
T ss_pred HHHHHHHHHHhhccC
Confidence 345567887777763
No 122
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=39.58 E-value=2.9e+02 Score=27.80 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=13.7
Q ss_pred HHHHHH-HhhccCeEEEEE
Q 023168 129 EEELEK-AMSHYGYEIVQT 146 (286)
Q Consensus 129 ~~~l~~-~~~~~Gi~V~~v 146 (286)
-+.|+. .|...||.|++-
T Consensus 520 ~D~iRd~~L~~~Gi~l~D~ 538 (651)
T PTZ00399 520 CDKLRDEWLPNLGIRIEDK 538 (651)
T ss_pred HHHHHHHHHHHCCCEEEEc
Confidence 445666 588889999985
No 123
>PHA00448 hypothetical protein
Probab=39.45 E-value=1.2e+02 Score=20.64 Aligned_cols=17 Identities=12% Similarity=-0.050 Sum_probs=8.0
Q ss_pred HHhhHHHHHHHhchhhH
Q 023168 188 RAEGEAEAKYLSGLGIA 204 (286)
Q Consensus 188 ~Aeaeaea~~~~Aea~a 204 (286)
.|+.|+++++..|..-.
T Consensus 26 ~Ar~~A~~A~~lakqs~ 42 (70)
T PHA00448 26 KARKDATRARRLAKQSR 42 (70)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 34455555554444333
No 124
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=38.12 E-value=1.7e+02 Score=21.87 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=13.9
Q ss_pred EEecccCChHHHHHHHHHHH
Q 023168 147 LIVDIEPDVHVKRAMNEINA 166 (286)
Q Consensus 147 ~I~~i~~p~~v~~ai~~~~~ 166 (286)
......+|+.+...+...+.
T Consensus 53 ~~~~~~lP~~l~~~~~~~~~ 72 (120)
T PF11740_consen 53 SEAAPDLPEALQDALAELMA 72 (120)
T ss_pred cccccCCChhHHHHHHHHHH
Confidence 45557789999887775443
No 125
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=35.78 E-value=4e+02 Score=25.44 Aligned_cols=26 Identities=27% Similarity=0.161 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhchh
Q 023168 177 KAEAEKILQIKRAEGEAEAKYLSGLG 202 (286)
Q Consensus 177 ~Ae~e~~~~i~~Aeaeaea~~~~Aea 202 (286)
+|+..++..+.+|+.++++.+..|+.
T Consensus 79 ~A~~~~~~~~~~A~~ea~~i~~~a~~ 104 (445)
T PRK13428 79 DAERIAEQLRAQADAEAERIKVQGAR 104 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 126
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=34.33 E-value=2.7e+02 Score=22.99 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=4.3
Q ss_pred EEEcCCCCch
Q 023168 258 VFIPHGPGAV 267 (286)
Q Consensus 258 i~lp~~~~~~ 267 (286)
+++-.++.++
T Consensus 122 i~i~~~~~D~ 131 (198)
T PRK03963 122 VVVRSNERTL 131 (198)
T ss_pred EEEEEccccH
Confidence 4444344443
No 127
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=34.23 E-value=2.3e+02 Score=24.67 Aligned_cols=17 Identities=47% Similarity=0.483 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhhHHH
Q 023168 178 AEAEKILQIKRAEGEAE 194 (286)
Q Consensus 178 Ae~e~~~~i~~Aeaeae 194 (286)
|+.++...+..|+.+++
T Consensus 49 Ar~eA~~Ii~~A~~~a~ 65 (255)
T TIGR03825 49 AEAEAAQIIEQAEAQAA 65 (255)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 128
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=29.93 E-value=2.8e+02 Score=24.49 Aligned_cols=36 Identities=11% Similarity=-0.127 Sum_probs=23.2
Q ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHH
Q 023168 173 AANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQ 208 (286)
Q Consensus 173 a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~ 208 (286)
....++..++...+..|+.+++.....|+.+++...
T Consensus 81 ~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~ 116 (281)
T PRK06669 81 EELLKKTDEASSIIEKLQMQIEREQEEWEEELERLI 116 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666777777777777777766655533
No 129
>TIGR02926 AhaH ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.
Probab=29.43 E-value=2.1e+02 Score=20.24 Aligned_cols=16 Identities=13% Similarity=-0.107 Sum_probs=6.4
Q ss_pred HHHHhhHHHHHHHhch
Q 023168 186 IKRAEGEAEAKYLSGL 201 (286)
Q Consensus 186 i~~Aeaeaea~~~~Ae 201 (286)
+..|+.++...+..|+
T Consensus 41 ~~~A~~ea~~ii~~Ak 56 (85)
T TIGR02926 41 EEEASKLGEEIIKEAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 130
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=29.24 E-value=42 Score=26.64 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhccCeEEEEEEEecccCCh
Q 023168 126 KAVEEELEKAMSHYGYEIVQTLIVDIEPDV 155 (286)
Q Consensus 126 ~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~ 155 (286)
-++++.|.+.|..+|++|.++.-.+.++|+
T Consensus 12 ~~lK~~l~~~L~~~g~eV~D~G~~~~dypd 41 (141)
T PRK12613 12 NALKELIKSFLQEEGYDIIDVTDINSDFID 41 (141)
T ss_pred HHHHHHHHHHHHHCCCEEEEcCCCCCChHH
Confidence 467888888899999999999876677775
No 131
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=28.53 E-value=2.2e+02 Score=23.23 Aligned_cols=43 Identities=19% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHH
Q 023168 175 NEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDS 217 (286)
Q Consensus 175 ~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a 217 (286)
..+|+.++...+..|+.+++..+..++.+++.........++.
T Consensus 3 ~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~ 45 (198)
T PF01991_consen 3 EEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEK 45 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 132
>PHA02571 a-gt.4 hypothetical protein; Provisional
Probab=28.27 E-value=2.6e+02 Score=21.06 Aligned_cols=70 Identities=16% Similarity=0.061 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHH
Q 023168 176 EKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEI 249 (286)
Q Consensus 176 ~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~leal~~~ 249 (286)
.++++++++......-.+|-.++..=|+..-..--=++-.+||..+.+-+... .++.++..+|..+-.++
T Consensus 27 ~e~eA~kkA~K~lkKN~rEIkRL~~HAe~al~~~Nk~~Y~YAI~KLR~i~kQp----~~de~i~tmW~TSrqqi 96 (109)
T PHA02571 27 NEAEAEKKAAKILKKNRREIKRLKKHAEEALFDNNKEQYVYAIKKLRDIYKQP----YTDELIETMWETSRQQI 96 (109)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHHHHH
Confidence 34445555544444444444444443333222222355667888887776542 34555666676655544
No 133
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=28.27 E-value=3.2e+02 Score=22.05 Aligned_cols=12 Identities=17% Similarity=0.338 Sum_probs=4.5
Q ss_pred HHHHHhhHHHHH
Q 023168 185 QIKRAEGEAEAK 196 (286)
Q Consensus 185 ~i~~Aeaeaea~ 196 (286)
.+..|++++.+.
T Consensus 70 ~L~~Ar~eA~~I 81 (155)
T PRK06569 70 EIDKTNTEIDRL 81 (155)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 134
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=27.19 E-value=2.1e+02 Score=24.91 Aligned_cols=10 Identities=40% Similarity=0.335 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 023168 175 NEKAEAEKIL 184 (286)
Q Consensus 175 ~~~Ae~e~~~ 184 (286)
+.+|+.++..
T Consensus 57 i~~A~~~a~~ 66 (255)
T TIGR03825 57 IEQAEAQAAA 66 (255)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 135
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.15 E-value=3.6e+02 Score=25.88 Aligned_cols=8 Identities=0% Similarity=0.588 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 023168 241 QYFDTMKE 248 (286)
Q Consensus 241 ~~leal~~ 248 (286)
.|++++..
T Consensus 255 kwl~aInT 262 (630)
T KOG0742|consen 255 KWLEAINT 262 (630)
T ss_pred HHHHHHhh
Confidence 34444443
No 136
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=26.33 E-value=3.7e+02 Score=22.12 Aligned_cols=22 Identities=9% Similarity=-0.094 Sum_probs=11.0
Q ss_pred CCCcEEEEcCCCCchhhHHHHH
Q 023168 253 SKSSSVFIPHGPGAVKDIATQI 274 (286)
Q Consensus 253 ~~~~~i~lp~~~~~~~~~~~~~ 274 (286)
+.-.+..-|.|..-+.+....+
T Consensus 120 ~~i~i~~~~~D~~~~~~~~~~~ 141 (198)
T PRK03963 120 DKVVVRSNERTLKLIDSRLEEI 141 (198)
T ss_pred CcEEEEEccccHHHHHHHHHHH
Confidence 4456666665554444444333
No 137
>PF10056 DUF2293: Uncharacterized conserved protein (DUF2293); InterPro: IPR018744 Proteins in this entry are found the bacteria and fungi, they have no known function.
Probab=23.12 E-value=2.8e+02 Score=20.01 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhHccCCCHHHHHH---hHHHHHHHHHHHHHHHhhccC
Q 023168 94 RGQIQAYVFDVIRASVPKLNLDAAFE---QKNEIAKAVEEELEKAMSHYG 140 (286)
Q Consensus 94 ~~~l~~~~~~~lr~vi~~~~~~el~~---~R~~i~~~i~~~l~~~~~~~G 140 (286)
+..+.-.+...+|..-..|+ +|+. +|++-...|.+.++..+..||
T Consensus 39 ~~~v~lAV~AhiRH~~T~YD--~LL~~g~~R~~AR~~V~~~~~~~L~~Wr 86 (86)
T PF10056_consen 39 ERAVQLAVIAHIRHQHTDYD--RLLREGYDRDEARRFVADRVNAVLREWR 86 (86)
T ss_pred HHHHHHHHHHHHHhcCCcHH--HHHHcCCCHHHHHHHHHHHHHHHHHhhC
Confidence 34666677788888777665 7776 699999999999999998886
No 138
>PRK15322 invasion protein OrgB; Provisional
Probab=23.06 E-value=2.8e+02 Score=23.50 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHhc
Q 023168 176 EKAEAEKILQIKRAEGEAEAKYLSG 200 (286)
Q Consensus 176 ~~Ae~e~~~~i~~Aeaeaea~~~~A 200 (286)
.+|+..+...+..|+.++|+....|
T Consensus 19 ~qA~~kA~~ii~qA~~eaE~ir~~A 43 (210)
T PRK15322 19 QQARRRAKRILRQAEEEAETLRMYA 43 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555444
No 139
>PF14173 ComGG: ComG operon protein 7
Probab=22.81 E-value=1.5e+02 Score=21.46 Aligned_cols=47 Identities=15% Similarity=-0.012 Sum_probs=28.2
Q ss_pred CCcceeecCCCcceeeEeeeeeE-EEeecCCCcccCCCcEEEEeEEEE
Q 023168 29 EPGCQCLPWCLGYKVAGRLSLRV-QQLDVKCETKTKDNVFVNVVASVQ 75 (286)
Q Consensus 29 ~pGlh~~~P~~~~~v~~~v~~r~-~~~~~~~~~~T~D~~~v~v~~~v~ 75 (286)
.++-++.++|+..++.+.+.... ..+.+...|.|++|...++.+.+.
T Consensus 37 ~~~~~~~~~y~~G~Vsy~~~~~~~~~~~v~l~~~t~sg~~~~~~f~yd 84 (95)
T PF14173_consen 37 EKSQTGSFQYPDGTVSYQITKEDEDVITVTLQCETKSGVRYTVQFQYD 84 (95)
T ss_pred cCCCceEEEecCCEEEEEEEeccceEEEEEEEEEecCCceEEEEEEEE
Confidence 34555566666566655444333 344455588999998876655443
No 140
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.75 E-value=3.4e+02 Score=26.45 Aligned_cols=12 Identities=8% Similarity=0.182 Sum_probs=7.1
Q ss_pred hhccCeEEEEEE
Q 023168 136 MSHYGYEIVQTL 147 (286)
Q Consensus 136 ~~~~Gi~V~~v~ 147 (286)
+..+|+.+++-.
T Consensus 504 l~~~g~~led~~ 515 (586)
T KOG2007|consen 504 LLELGVRLEDRK 515 (586)
T ss_pred HHHhhhHHHhCC
Confidence 456677665544
No 141
>PTZ00321 ribosomal protein L11; Provisional
Probab=22.32 E-value=3.7e+02 Score=24.37 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=26.2
Q ss_pred hHccCCCHHHHHH-hHHHHHH-------HHHH---HHHHHhhccCeEEEEEE
Q 023168 107 ASVPKLNLDAAFE-QKNEIAK-------AVEE---ELEKAMSHYGYEIVQTL 147 (286)
Q Consensus 107 ~vi~~~~~~el~~-~R~~i~~-------~i~~---~l~~~~~~~Gi~V~~v~ 147 (286)
+.+|..++++++. .+-++.+ .+.. .+--.+...||+|+...
T Consensus 144 e~VG~ITlkQVyEIAkiK~~DLnal~~~~LesAvK~ViGTARSMGIkVeGKD 195 (342)
T PTZ00321 144 HYCALMTLEMAYEIAKMKPRSWGRPEYPLIETRVRRVVGQARRMGVCFIGVD 195 (342)
T ss_pred ceEEeccHHHHHHHHHHhhhccccccccCHHHHHHHHHhhHhcCeEEEeccc
Confidence 5788899998887 3333222 3333 34446677899998743
No 142
>PRK15354 type III secretion system protein SsaK; Provisional
Probab=22.22 E-value=4.6e+02 Score=22.39 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Q 023168 173 AANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRDSVLA 220 (286)
Q Consensus 173 a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~a~~~ 220 (286)
+....|.......+..|...|++.+..|+.+..+....+.-+++.+..
T Consensus 34 ~~e~~a~~~s~~il~~A~rkA~~I~q~A~~~~~~ll~qaqqqad~L~~ 81 (224)
T PRK15354 34 AQEQQAKRVSHAIVSSAYRKAEKIIRDAYRYQREQKVEQQQELACLRK 81 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 143
>PRK06328 type III secretion system protein; Validated
Probab=21.41 E-value=3.5e+02 Score=23.09 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 023168 243 FDTMKEI 249 (286)
Q Consensus 243 leal~~~ 249 (286)
-++|..+
T Consensus 122 ~~aL~~l 128 (223)
T PRK06328 122 ANSLKEL 128 (223)
T ss_pred HHHHHhc
Confidence 3344443
No 144
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=21.04 E-value=3.7e+02 Score=20.23 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHh
Q 023168 161 MNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLS 199 (286)
Q Consensus 161 i~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~ 199 (286)
|..-..||.+....+.+|...+...+.+|+-||+..+..
T Consensus 8 IqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~ 46 (108)
T KOG1772|consen 8 IQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEE 46 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666555556666666667777777766666543
No 145
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=20.38 E-value=2.1e+02 Score=24.28 Aligned_cols=28 Identities=11% Similarity=0.317 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHHHhHccCCCHHHHHH
Q 023168 92 NTRGQIQAYVFDVIRASVPKLNLDAAFE 119 (286)
Q Consensus 92 ~~~~~l~~~~~~~lr~vi~~~~~~el~~ 119 (286)
..+..|-+++.+++|.++|.++.++++.
T Consensus 90 ~LE~~l~~LVl~~Vr~ILg~fd~~ell~ 117 (207)
T PF06635_consen 90 GLEQELAELVLEIVRKILGEFDPDELLV 117 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 4567889999999999999999999886
No 146
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=20.11 E-value=1.6e+02 Score=21.49 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=9.6
Q ss_pred CCCcEEEEeEEEEEEE
Q 023168 63 KDNVFVNVVASVQYRA 78 (286)
Q Consensus 63 ~D~~~v~v~~~v~yrI 78 (286)
.++..+++.+.+.|-.
T Consensus 57 ~~~i~v~l~v~v~~g~ 72 (108)
T PF03780_consen 57 DGGITVDLHVVVEYGV 72 (108)
T ss_pred CcceEEEEEEEEECCc
Confidence 4566666666666554
No 147
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=20.10 E-value=84 Score=25.01 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhccCeEEEEEEE---ecccCCh
Q 023168 125 AKAVEEELEKAMSHYGYEIVQTLI---VDIEPDV 155 (286)
Q Consensus 125 ~~~i~~~l~~~~~~~Gi~V~~v~I---~~i~~p~ 155 (286)
.-++++.|.+.|.+.|.+|.++.- ..+++|+
T Consensus 10 G~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd 43 (143)
T TIGR01120 10 GFILKEEIKAFLVERGVKVIDKGTWSSERTDYPH 43 (143)
T ss_pred hHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHH
Confidence 346788888899999999999876 3355554
Done!