Query 023168
Match_columns 286
No_of_seqs 191 out of 1567
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 17:28:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023168.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023168hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bk6_A PH stomatin; archaea, t 100.0 6.8E-31 2.3E-35 219.4 16.9 177 40-255 3-180 (188)
2 4fvg_A Stomatin; mixed alpha-b 100.0 6.3E-28 2.2E-32 190.2 12.0 130 34-167 3-133 (133)
3 1win_A Flotillin 2; BAND 7 dom 99.9 3.9E-23 1.3E-27 164.7 4.4 128 40-168 4-139 (143)
4 2rpb_A Hypothetical membrane p 99.9 5.8E-22 2E-26 151.7 9.1 109 46-156 4-113 (113)
5 2zuo_A MVP, major vault protei 99.0 6.8E-08 2.3E-12 93.6 24.1 153 7-162 459-655 (861)
6 3v6i_B V-type ATP synthase, su 87.8 4.4 0.00015 29.0 8.4 30 174-203 21-50 (105)
7 3bk6_A PH stomatin; archaea, t 84.8 1.4 4.9E-05 35.3 5.5 25 200-224 128-152 (188)
8 2zuo_A MVP, major vault protei 83.6 27 0.00093 34.4 14.4 21 140-160 637-657 (861)
9 3v6i_A V-type ATP synthase sub 74.8 13 0.00044 29.6 8.0 13 237-249 102-114 (187)
10 2k6i_A Uncharacterized protein 74.0 3.4 0.00012 26.2 3.3 21 178-198 24-44 (56)
11 3v6i_B V-type ATP synthase, su 71.7 21 0.00071 25.5 7.3 29 166-194 24-52 (105)
12 2k6i_A Uncharacterized protein 70.7 3.5 0.00012 26.2 2.8 28 166-193 23-50 (56)
13 2kk7_A V-type ATP synthase sub 70.4 8.7 0.0003 24.0 4.7 26 178-203 19-44 (52)
14 2xzm_4 40S ribosomal protein S 68.0 8.1 0.00028 32.7 5.4 89 59-147 129-222 (265)
15 3u5c_B RP10A, 40S ribosomal pr 59.4 8.6 0.00029 32.4 4.0 89 59-147 126-216 (255)
16 3v6i_A V-type ATP synthase sub 59.0 64 0.0022 25.4 11.9 25 242-268 99-128 (187)
17 4efa_G V-type proton ATPase su 58.4 52 0.0018 24.2 8.2 43 159-201 10-52 (119)
18 3j20_A 30S ribosomal protein S 55.8 79 0.0027 25.5 9.3 81 59-148 108-190 (198)
19 4efa_G V-type proton ATPase su 52.9 53 0.0018 24.2 6.9 44 173-216 13-56 (119)
20 2b5u_A Colicin E3; high resolu 41.4 1.8E+02 0.0062 26.9 9.8 35 139-173 278-312 (551)
21 4efa_E V-type proton ATPase su 37.8 1.6E+02 0.0056 23.9 9.3 10 240-249 123-132 (233)
22 2acm_B Mucin-1; auto-catalytic 35.1 47 0.0016 20.8 3.5 22 135-156 31-52 (55)
23 1l2p_A ATP synthase B chain; a 26.2 1.2E+02 0.0042 18.8 6.3 15 198-212 31-45 (61)
No 1
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.97 E-value=6.8e-31 Score=219.40 Aligned_cols=177 Identities=25% Similarity=0.271 Sum_probs=141.4
Q ss_pred cceeeEeeeeeEEEeecCC-CcccCCCcEEEEeEEEEEEECcchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHH
Q 023168 40 GYKVAGRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAF 118 (286)
Q Consensus 40 ~~~v~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~ 118 (286)
++++ +++|+|.++++++. .++|+|+++|+|+++++|||.| |.++++.+.|+...+.+++++.+|+++|++++++++
T Consensus 3 i~~v-~~vd~r~~~~~v~~~~v~TkD~~~V~v~~~v~yrI~d--p~~~~~~v~~~~~~i~~~~~~~lR~vig~~~l~ell 79 (188)
T 3bk6_A 3 FEKA-VIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVD--PVKAVTQVKNYIMATSQISQTTLRSVIGQAHLDELL 79 (188)
T ss_dssp EEEC-CCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred eEEE-EEEeeeEEEEecCCceeEcCCCCEEEEEEEEEEEECC--HHHHHHHhcCHHHHHHHHHHHHHHHHHccCCHHHHH
Confidence 4777 48999999999987 8999999999999999999999 567788999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHH
Q 023168 119 EQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYL 198 (286)
Q Consensus 119 ~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~ 198 (286)
++|++|+..|++.|++.+++|||+|.+|.|++|+||+++.++|++++.|++++++.+.+|||++++ .+.
T Consensus 80 ~~R~~i~~~i~~~l~~~~~~~GI~v~~v~I~~i~~p~ev~~a~~~~~~Aere~~A~i~~Aege~~a-----------~~~ 148 (188)
T 3bk6_A 80 SERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQA-----------AEK 148 (188)
T ss_dssp HCHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCeEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----------HHH
Confidence 999999999999999999999999999999999999999999999988888777666555555443 333
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHhccCCC
Q 023168 199 SGLGIARQRQAIVDGLRDSVLAFSENVPGTTSKDVMDMVLVTQYFDTMKEIGASSKS 255 (286)
Q Consensus 199 ~Aea~a~~~~~~a~a~a~a~~~~~~a~~~~~~~~~~~~~l~~~~leal~~~~~~~~~ 255 (286)
.|+| .+.+.. + +.++.+||||++.+++.++++
T Consensus 149 ~a~a---------------~~~~~~------~----~~~l~lr~le~~~~ia~~~~~ 180 (188)
T 3bk6_A 149 LREA---------------AEIISE------H----PMALQLRTLQTISDVAGDKSN 180 (188)
T ss_dssp HHHH---------------HHHHHH------C----TTHHHHHHTTC----------
T ss_pred HHHH---------------HHHHHh------C----HHHHHHHHHHHHHHHhcCCCC
Confidence 3222 112221 1 245778999999999875443
No 2
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=99.95 E-value=6.3e-28 Score=190.19 Aligned_cols=130 Identities=24% Similarity=0.310 Sum_probs=105.8
Q ss_pred eecCCCcceeeEeeeeeEEEeecCC-CcccCCCcEEEEeEEEEEEECcchHhhhhccccChHHHHHHHHHHHHHhHccCC
Q 023168 34 CLPWCLGYKVAGRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKL 112 (286)
Q Consensus 34 ~~~P~~~~~v~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~ 112 (286)
++.|| ++++. ++|+|.+++++++ +++|+|++.+.|+++++|||.| |.+++|++.|++..+..++++++|+++|++
T Consensus 3 l~~P~-id~v~-~vd~R~~~~d~~~q~vlT~D~~~v~Vd~~v~yrI~D--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~ 78 (133)
T 4fvg_A 3 LGSPS-TDSAA-KVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQN--ATLAVANITNADSATRLLAQTTLRNALGTK 78 (133)
T ss_dssp -------------CCCSCEEEEEEEEEEECTTCCEEEEEEEEEEEESC--HHHHHHSSSCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCc-eeEEE-EEEeEEEEecCCCeEEEeCCCCEEEEEEEEEEEEee--hHHhHhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 67899 68885 8999999999987 8999999999999999999999 678999999999999999999999999999
Q ss_pred CHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHHHHHHHHHH
Q 023168 113 NLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAA 167 (286)
Q Consensus 113 ~~~el~~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~~~A 167 (286)
++++++++|++|+..+++.+++.+++|||+|.+|.|++++||+++.+||+++++|
T Consensus 79 ~ldeil~~r~~i~~~i~~~l~~~~~~~GI~V~~V~ikdi~~P~~v~~am~~~~~A 133 (133)
T 4fvg_A 79 NLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAEAEA 133 (133)
T ss_dssp CHHHHHHCHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEECCCC-----------
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhcCCEEEEEEEEEecCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999887765
No 3
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1
Probab=99.87 E-value=3.9e-23 Score=164.71 Aligned_cols=128 Identities=18% Similarity=0.306 Sum_probs=110.3
Q ss_pred cceeeEeeeeeEEEeecCC-CcccCCCcEEEEeEEEEEEEC-cchHh-hhhcc--c---cChHHHHHHHHHHHHHhHccC
Q 023168 40 GYKVAGRLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRAL-ADKAY-DAFYK--L---SNTRGQIQAYVFDVIRASVPK 111 (286)
Q Consensus 40 ~~~v~~~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~-d~~~~-~~~~~--~---~~~~~~l~~~~~~~lr~vi~~ 111 (286)
++++. ++|+|++++++++ +++|+|++++.|+++++|||. ||..+ .+..+ . ...+..+.+.+++.+|+++|+
T Consensus 4 i~~v~-~vdlr~~~ldv~~q~viTkD~v~v~Vdavv~~rI~dd~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~LR~viG~ 82 (143)
T 1win_A 4 GSSGQ-RISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGT 82 (143)
T ss_dssp CCCCC-SCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEE-EEECceEEEeCCcceeEcCCCCEEEEEEEEEEEECCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 47775 8999999999998 899999999999999999998 44321 11111 1 124567888999999999999
Q ss_pred CCHHHHHHhHHHHHHHHHHHHHHHhhccCeEEEEEEEecccCChHHHHHHHHHHHHH
Q 023168 112 LNLDAAFEQKNEIAKAVEEELEKAMSHYGYEIVQTLIVDIEPDVHVKRAMNEINAAA 168 (286)
Q Consensus 112 ~~~~el~~~R~~i~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~v~~ai~~~~~Ae 168 (286)
+++++++++|++|+..|.+.+++.+++|||+|.+|.|++|+||+++.+||.+++.|+
T Consensus 83 ~tldeils~R~~i~~~v~~~~~~~~~~~Gi~V~~v~IkdI~~p~~~~~am~~~~~Ae 139 (143)
T 1win_A 83 LTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSG 139 (143)
T ss_dssp SCHHHHHHTHHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEeecChHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999766655
No 4
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=99.86 E-value=5.8e-22 Score=151.69 Aligned_cols=109 Identities=29% Similarity=0.415 Sum_probs=104.4
Q ss_pred eeeeeEEEeecCC-CcccCCCcEEEEeEEEEEEECcchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHH
Q 023168 46 RLSLRVQQLDVKC-ETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEI 124 (286)
Q Consensus 46 ~v~~r~~~~~~~~-~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i 124 (286)
++|+|.+.++++. +++|+|+++|.++++++|||.| +.++++++.|++..+.+.+++++|+++|++++++++++|++|
T Consensus 4 ~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~~rI~d--p~~~~~~v~~~~~~l~~~~~~~lR~vig~~~l~ei~~~R~~i 81 (113)
T 2rpb_A 4 HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVID--PVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDII 81 (113)
T ss_dssp CCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESC--TTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTTHHHHCHHHH
T ss_pred EEeeeEEEEecCcceeEeCCCCEEEEEEEEEEEECC--HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCcHHHHHhCHHHH
Confidence 6899999999988 9999999999999999999999 567888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCeEEEEEEEecccCChH
Q 023168 125 AKAVEEELEKAMSHYGYEIVQTLIVDIEPDVH 156 (286)
Q Consensus 125 ~~~i~~~l~~~~~~~Gi~V~~v~I~~i~~p~~ 156 (286)
++.+++.+++.+++|||+|.+|.|++++||++
T Consensus 82 ~~~i~~~l~~~~~~~Gi~v~~v~I~~i~~p~e 113 (113)
T 2rpb_A 82 NARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp HHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHhcCeEEEEEEEEEecCCCC
Confidence 99999999999999999999999999999974
No 5
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=99.04 E-value=6.8e-08 Score=93.64 Aligned_cols=153 Identities=14% Similarity=0.171 Sum_probs=105.6
Q ss_pred EEEecCCeEEEEEec--CeeeeEeCCcceeecCCCcceeeEeeee-----------eEEEeecCC-------CcccCCCc
Q 023168 7 CIQVEQSKVVIREQF--GKFDHVLEPGCQCLPWCLGYKVAGRLSL-----------RVQQLDVKC-------ETKTKDNV 66 (286)
Q Consensus 7 ~~~V~~g~~~Vv~~f--Gk~~~v~~pGlh~~~P~~~~~v~~~v~~-----------r~~~~~~~~-------~~~T~D~~ 66 (286)
.|.||.+.+.-++-+ |+..-++||-+.++-|- +... .+++ +.-.+.+.+ .+-|+|..
T Consensus 459 ~~rvphnaaVqvyDy~~~~~RvvfGP~lv~L~Pd--E~ft-vlsLSgg~PK~~~~i~sl~L~lGPdf~tD~i~vET~DhA 535 (861)
T 2zuo_A 459 SYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPE--EQFT-VLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHA 535 (861)
T ss_dssp EEECCTTEEEEEECSSSCCEEEECSSCEEECCSS--CEEC-CEEECCSSSCCTTSEEESSEECSSCEEEEEEEEECTTCC
T ss_pred EEEcCCCeEEEEEecCCCceEEEECCcEEEECCC--ccEE-EEEecCCCCCCCCceEEEEeeeCCccceEEEEEEEcCce
Confidence 366899988888875 55555789999877665 3221 2222 111122222 57899999
Q ss_pred EEEEeEEEEEEEC--cc---hHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHhHHHHHHH-HHH----------
Q 023168 67 FVNVVASVQYRAL--AD---KAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQKNEIAKA-VEE---------- 130 (286)
Q Consensus 67 ~v~v~~~v~yrI~--d~---~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~R~~i~~~-i~~---------- 130 (286)
.+.+.++++|+.. |+ .....+|++.|+-+-+=..+.+.+|..++..+++++..+-..|-.. +..
T Consensus 536 rL~L~LsYnW~F~~~d~~~~~~~~k~Fsv~DFvGd~Ck~iaSriR~aVA~~~Fd~FHknsa~iir~aVFg~~~~~~~~~~ 615 (861)
T 2zuo_A 536 RLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPD 615 (861)
T ss_dssp EEEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC--------
T ss_pred EEEEEEEEEEEEeccCCCChhhhhhhccCCchHHHHHHHHHHHHHHHhhcCcHHHHhhhHHHHHHHhhcCCCcccccccc
Confidence 9999999999985 32 2336789999999888888999999999999999999875554221 111
Q ss_pred -----HHH--HHhhccCeEEEEEEEecccCC-hHHHHHHH
Q 023168 131 -----ELE--KAMSHYGYEIVQTLIVDIEPD-VHVKRAMN 162 (286)
Q Consensus 131 -----~l~--~~~~~~Gi~V~~v~I~~i~~p-~~v~~ai~ 162 (286)
..+ -.+...|+.|.+|.|+++.|- +...++++
T Consensus 616 ~~~~~~~~~~~~F~~N~lvitsVDvqsvEpvDqrtrd~Lq 655 (861)
T 2zuo_A 616 GTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQ 655 (861)
T ss_dssp -----CCCSCEECTTTCEEEEEEEEEEEEESSHHHHHHHH
T ss_pred cccccCcccceEEccCCeEEEEEeeeeecccCHHHHHHHH
Confidence 000 124556999999999999974 33444444
No 6
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=87.84 E-value=4.4 Score=28.96 Aligned_cols=30 Identities=33% Similarity=0.230 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhchhh
Q 023168 174 ANEKAEAEKILQIKRAEGEAEAKYLSGLGI 203 (286)
Q Consensus 174 ~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~ 203 (286)
++..|..++...+..|++++.+....|++.
T Consensus 21 ~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~ 50 (105)
T 3v6i_B 21 RLEAAKKEAEERVKRAEAEAKALLEEAEAK 50 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544443
No 7
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=84.80 E-value=1.4 Score=35.29 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=16.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhc
Q 023168 200 GLGIARQRQAIVDGLRDSVLAFSEN 224 (286)
Q Consensus 200 Aea~a~~~~~~a~a~a~a~~~~~~a 224 (286)
|+.++++.+++|+|++++.+.++++
T Consensus 128 Aere~~A~i~~Aege~~a~~~~a~a 152 (188)
T 3bk6_A 128 AERERRARITLAEAERQAAEKLREA 152 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4445556667777777777777665
No 8
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=83.60 E-value=27 Score=34.42 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=9.4
Q ss_pred CeEEEEEEEecccCChHHHHH
Q 023168 140 GYEIVQTLIVDIEPDVHVKRA 160 (286)
Q Consensus 140 Gi~V~~v~I~~i~~p~~v~~a 160 (286)
.|.|.+|...|..--+.++++
T Consensus 637 sVDvqsvEpvDqrtrd~LqkS 657 (861)
T 2zuo_A 637 SVDVQSVEPVDQRTRDALQRS 657 (861)
T ss_dssp EEEEEEEEESSHHHHHHHHHH
T ss_pred EEeeeeecccCHHHHHHHHHH
Confidence 445555555444443333333
No 9
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=74.77 E-value=13 Score=29.60 Aligned_cols=13 Identities=8% Similarity=0.299 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 023168 237 VLVTQYFDTMKEI 249 (286)
Q Consensus 237 ~l~~~~leal~~~ 249 (286)
++...-.+++..+
T Consensus 102 ~L~~Li~ea~~~l 114 (187)
T 3v6i_A 102 VVRKLALEALEAL 114 (187)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc
Confidence 3334445555554
No 10
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=73.97 E-value=3.4 Score=26.24 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q 023168 178 AEAEKILQIKRAEGEAEAKYL 198 (286)
Q Consensus 178 Ae~e~~~~i~~Aeaeaea~~~ 198 (286)
||.++...+..|+.+++..+.
T Consensus 24 AE~~A~~iVeeA~~ea~~ii~ 44 (56)
T 2k6i_A 24 AEEQAVKEIEEAKNRAEQIKA 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 11
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=71.75 E-value=21 Score=25.47 Aligned_cols=29 Identities=31% Similarity=0.282 Sum_probs=18.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHH
Q 023168 166 AAARLRLAANEKAEAEKILQIKRAEGEAE 194 (286)
Q Consensus 166 ~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeae 194 (286)
.|.++.++.+.+||+++...+..|+..+.
T Consensus 24 ~Ar~eA~~~v~~AEAeA~ril~eAe~~a~ 52 (105)
T 3v6i_B 24 AAKKEAEERVKRAEAEAKALLEEAEAKAK 52 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777788877776655555443
No 12
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=70.70 E-value=3.5 Score=26.23 Aligned_cols=28 Identities=21% Similarity=0.035 Sum_probs=11.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHH
Q 023168 166 AAARLRLAANEKAEAEKILQIKRAEGEA 193 (286)
Q Consensus 166 ~Ae~~~~a~~~~Ae~e~~~~i~~Aeaea 193 (286)
.|+++....+.+|+.++...+..|+.++
T Consensus 23 eAE~~A~~iVeeA~~ea~~ii~eAreeA 50 (56)
T 2k6i_A 23 LAEEQAVKEIEEAKNRAEQIKAEAIEEA 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 13
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=70.36 E-value=8.7 Score=23.95 Aligned_cols=26 Identities=27% Similarity=0.083 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhchhh
Q 023168 178 AEAEKILQIKRAEGEAEAKYLSGLGI 203 (286)
Q Consensus 178 Ae~e~~~~i~~Aeaeaea~~~~Aea~ 203 (286)
|+.++...+..|+.+++..+..|+.+
T Consensus 19 A~~eA~~Il~eA~~eA~~Ii~eA~~~ 44 (52)
T 2kk7_A 19 AKAEANKIISEAEAEKAKILEKAKEE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 14
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=67.98 E-value=8.1 Score=32.71 Aligned_cols=89 Identities=16% Similarity=0.198 Sum_probs=54.5
Q ss_pred CcccCCCcEEEEeEEEEEEECc---chHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHh--HHHHHHHHHHHHH
Q 023168 59 ETKTKDNVFVNVVASVQYRALA---DKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQ--KNEIAKAVEEELE 133 (286)
Q Consensus 59 ~~~T~D~~~v~v~~~v~yrI~d---~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~--R~~i~~~i~~~l~ 133 (286)
++.|+||..+.|-....-.-.. ....+..|.-......|+......+...++..++++++.. -+.|..+|....+
T Consensus 129 dVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~keI~k~~k 208 (265)
T 2xzm_4 129 DCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAEFSKNLIGEDYTKKIEKETK 208 (265)
T ss_dssp EEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred EEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHHHHHHHHHHHhhhCCHHHHHHHHccchHHHHHHHHhh
Confidence 6789999999886654432221 1111222222233467888999999999999999999973 4556666555544
Q ss_pred HHhhccCeEEEEEE
Q 023168 134 KAMSHYGYEIVQTL 147 (286)
Q Consensus 134 ~~~~~~Gi~V~~v~ 147 (286)
...--..++|..|.
T Consensus 209 ~IyPL~~V~IrKvK 222 (265)
T 2xzm_4 209 NIFPLQNITIRKVK 222 (265)
T ss_dssp TTCCEEEEEEEEEE
T ss_pred hccccceEEEEEEE
Confidence 43322234454444
No 15
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=59.38 E-value=8.6 Score=32.44 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=57.1
Q ss_pred CcccCCCcEEEEeEEEEEEECcchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHh--HHHHHHHHHHHHHHHh
Q 023168 59 ETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQ--KNEIAKAVEEELEKAM 136 (286)
Q Consensus 59 ~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~--R~~i~~~i~~~l~~~~ 136 (286)
++.|+||..+.+-....-.-.+....+-.|--......|+......+...++..++++++.. -+.|..+|....+...
T Consensus 126 dVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRkkm~eii~~~~~~~dl~e~V~kli~~~i~~eI~k~~k~Iy 205 (255)
T 3u5c_B 126 TVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKLIPEVINKEIENATKDIF 205 (255)
T ss_dssp EEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHTTTHHHHHHHHHHHTTC
T ss_pred EEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHHHHHHHHHHHhhhCCHHHHHHHHcCchHHHHHHHHhcccc
Confidence 78999999998876654322211111112222233468999999999999999999999984 4777777777666543
Q ss_pred hccCeEEEEEE
Q 023168 137 SHYGYEIVQTL 147 (286)
Q Consensus 137 ~~~Gi~V~~v~ 147 (286)
--.-++|..|.
T Consensus 206 PL~~V~IrKvK 216 (255)
T 3u5c_B 206 PLQNIHVRKVK 216 (255)
T ss_dssp CCEEEECCCEE
T ss_pred ccceEEEEEEE
Confidence 33334444443
No 16
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=59.04 E-value=64 Score=25.37 Aligned_cols=25 Identities=4% Similarity=0.259 Sum_probs=11.2
Q ss_pred HHHHHHHHhc-----cCCCcEEEEcCCCCchh
Q 023168 242 YFDTMKEIGA-----SSKSSSVFIPHGPGAVK 268 (286)
Q Consensus 242 ~leal~~~~~-----~~~~~~i~lp~~~~~~~ 268 (286)
|.+.|..+.. -+...+++ .++.++.
T Consensus 99 Y~~~L~~Li~ea~~~l~~~~~vv--~~~~D~~ 128 (187)
T 3v6i_A 99 WPEVVRKLALEALEALPGAKALV--ANPEDLP 128 (187)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEE--ECTTTHH
T ss_pred HHHHHHHHHHHHHHHcCCCCeEE--ECHHHHH
Confidence 4444444443 24455544 3444443
No 17
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=58.43 E-value=52 Score=24.20 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHhch
Q 023168 159 RAMNEINAAARLRLAANEKAEAEKILQIKRAEGEAEAKYLSGL 201 (286)
Q Consensus 159 ~ai~~~~~Ae~~~~a~~~~Ae~e~~~~i~~Aeaeaea~~~~Ae 201 (286)
..|..-+.||.+...-+.+|..++...+.+|+.+|++.+..=.
T Consensus 10 ~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR 52 (119)
T 4efa_G 10 NGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYK 52 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777667777777777777777777777665433
No 18
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=55.76 E-value=79 Score=25.46 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=56.9
Q ss_pred CcccCCCcEEEEeEEEEEEECcchHhhhhccccChHHHHHHHHHHHHHhHccCCCHHHHHHh--HHHHHHHHHHHHHHHh
Q 023168 59 ETKTKDNVFVNVVASVQYRALADKAYDAFYKLSNTRGQIQAYVFDVIRASVPKLNLDAAFEQ--KNEIAKAVEEELEKAM 136 (286)
Q Consensus 59 ~~~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~~~lr~vi~~~~~~el~~~--R~~i~~~i~~~l~~~~ 136 (286)
++.|+||..+.+-....-. . +.-......|+......+...++..++++++.. -+.++.+|....+...
T Consensus 108 dVkT~DGy~lRvf~i~fT~-k--------ra~~sQ~~~IRk~m~eii~~~~~~~~l~e~V~~li~~~i~~eI~k~~k~Iy 178 (198)
T 3j20_A 108 NITTKDGYKLRVMAMAIAM-R--------RIQTSQERAIRKIMQEIIYKKAEELNFKDFVLESVNGKIAAEIAKEAKKIY 178 (198)
T ss_dssp EEECTTSCEEEEEEEEEEC-S--------SCCCTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSHHHHHHHHHHHHHHS
T ss_pred EEEecCCCEEEEEEEEEEe-c--------cccchhhhHHHHHHHHHHHHHhccCCHHHHHHHHcCChHHHHHHHhhCccc
Confidence 6789999988876654311 1 011233468888899999999999999999984 4788888888777665
Q ss_pred hccCeEEEEEEE
Q 023168 137 SHYGYEIVQTLI 148 (286)
Q Consensus 137 ~~~Gi~V~~v~I 148 (286)
--.-++|..+.+
T Consensus 179 Pl~~V~IrKvKv 190 (198)
T 3j20_A 179 PLRKAEIRKIKV 190 (198)
T ss_dssp CEEEEEEEEEEE
T ss_pred ccceEEEEEEEE
Confidence 444455555544
No 19
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=52.86 E-value=53 Score=24.19 Aligned_cols=44 Identities=18% Similarity=0.014 Sum_probs=28.6
Q ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHHhchhhHHHHHHHHHHHHH
Q 023168 173 AANEKAEAEKILQIKRAEGEAEAKYLSGLGIARQRQAIVDGLRD 216 (286)
Q Consensus 173 a~~~~Ae~e~~~~i~~Aeaeaea~~~~Aea~a~~~~~~a~a~a~ 216 (286)
.....||.++...+..|+......+..|..+|+..+..-..+.+
T Consensus 13 QqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE 56 (119)
T 4efa_G 13 ATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKD 56 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777777776665554444443
No 20
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=41.44 E-value=1.8e+02 Score=26.86 Aligned_cols=35 Identities=23% Similarity=0.143 Sum_probs=28.1
Q ss_pred cCeEEEEEEEecccCChHHHHHHHHHHHHHHHHHH
Q 023168 139 YGYEIVQTLIVDIEPDVHVKRAMNEINAAARLRLA 173 (286)
Q Consensus 139 ~Gi~V~~v~I~~i~~p~~v~~ai~~~~~Ae~~~~a 173 (286)
-|++-.-|.+.+|-.|.++.+-.++..+++|+-..
T Consensus 278 Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew~~ 312 (551)
T 2b5u_A 278 SGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDA 312 (551)
T ss_dssp GCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeecCCHHHHHHHHHHHHHHHHHhhh
Confidence 48999999999999999988888877777666433
No 21
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=37.77 E-value=1.6e+02 Score=23.85 Aligned_cols=10 Identities=0% Similarity=0.245 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 023168 240 TQYFDTMKEI 249 (286)
Q Consensus 240 ~~~leal~~~ 249 (286)
..-++++..+
T Consensus 123 ~Li~eal~~l 132 (233)
T 4efa_E 123 SLIVEALLKL 132 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 3344555554
No 22
>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=35.11 E-value=47 Score=20.84 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=15.0
Q ss_pred HhhccCeEEEEEEEecccCChH
Q 023168 135 AMSHYGYEIVQTLIVDIEPDVH 156 (286)
Q Consensus 135 ~~~~~Gi~V~~v~I~~i~~p~~ 156 (286)
....|.+.|.+|.++|+.+|..
T Consensus 31 a~~~YnL~IS~vsV~dv~FPsS 52 (55)
T 2acm_B 31 AASRYNLTISDVSVSDVPFPFS 52 (55)
T ss_dssp HHHHHCCCEEEEEEECC-----
T ss_pred ccccccceecceeEEeccCCCc
Confidence 4458999999999999999854
No 23
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=26.24 E-value=1.2e+02 Score=18.81 Aligned_cols=15 Identities=7% Similarity=-0.190 Sum_probs=5.6
Q ss_pred HhchhhHHHHHHHHH
Q 023168 198 LSGLGIARQRQAIVD 212 (286)
Q Consensus 198 ~~Aea~a~~~~~~a~ 212 (286)
..|+.+++..+..|.
T Consensus 31 ~~A~~ea~~i~~~A~ 45 (61)
T 1l2p_A 31 AEAEQERTKIVAQAQ 45 (61)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
Done!