BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023171
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 27 IHCEGCKKKVTKILKGIEGVYTAVIDSQQHKVTVIGNVDAETLIKKLLRSGKHAELWPEK 86
+HCE C + LK + G+ + D +Q ++V +V T+I L GK A +
Sbjct: 15 MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAII---- 70
Query: 87 KDKTSGKSKNNDKQKELSKDGQEVLDDRHKDTAEK 121
G K N + + Q+ D+ KDTA +
Sbjct: 71 ----RGAGKPNSSAVAILETFQKYTIDQKKDTAVR 101
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 28 HCEGCKKKVTKILKGIEGVYTAVIDSQQHKVTVIGNVDAETLIKKLLRSGKHAELWPEKK 87
HCE C + LK + G+ + D +Q +V +V T+I L GK A +
Sbjct: 15 HCENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTLRNCGKDAII----- 69
Query: 88 DKTSGKSKNNDKQKELSKDGQEVLDDRHKDTAEK 121
G K N + + Q+ D+ KDTA +
Sbjct: 70 ---RGAGKPNSSAVAILETFQKYTIDQKKDTAVR 100
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 34.7 bits (78), Expect = 0.054, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 27 IHCEGCKKKVTKILKGIEGVYTAVIDSQQHKVTVIGNVDAETLIKKLLRSG--KHAELWP 84
+ C C K + +K IEGV A+++ K+TV G E I+++ ++G +H ++ P
Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTG----EASIQQVEQAGAFEHLKIIP 67
Query: 85 EKK 87
EK+
Sbjct: 68 EKE 70
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 30.0 bits (66), Expect = 1.3, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 27 IHCEGCKKKVTKILKGIEGVYTAVIDSQQHKVTVIGNVDAETLIKKLLRSGKHAE 81
I CE C + VTK ++ + T +D KVT+ + E L + +G E
Sbjct: 10 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEVE 64
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 30.0 bits (66), Expect = 1.4, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 27 IHCEGCKKKVTKILKGIEGVYTAVIDSQQHKVTVIGNVDAETLIKKLLRSGKHAE 81
I CE C + VTK ++ + T +D KVT+ + E L + +G E
Sbjct: 10 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE 64
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 30.0 bits (66), Expect = 1.6, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 27 IHCEGCKKKVTKILKGIEGVYTAVIDSQQHKVTVIGNVDAETLIKKLLRSGKHAE 81
I CE C + VTK ++ + T +D KVT+ + E L + +G E
Sbjct: 9 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,630,641
Number of Sequences: 62578
Number of extensions: 256301
Number of successful extensions: 449
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 441
Number of HSP's gapped (non-prelim): 16
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)