BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023171
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 17 QFQTWVLKVLIHCEGCKKKVTKILKGIEGVYTAVIDSQQHKVTVIGNVDAETLIKKLL-R 75
Q QT +KV + CEGC++KV + ++G++GV + ++ + HKVTV+G VD ++ ++ R
Sbjct: 24 QLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARMSHR 83
Query: 76 SGKHAELWP 84
+GK ELWP
Sbjct: 84 TGKKVELWP 92
>sp|P40202|CCS1_YEAST Superoxide dismutase 1 copper chaperone OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CCS1 PE=1 SV=1
Length = 249
Score = 38.1 bits (87), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 27 IHCEGCKKKVTKILKGIEGVYTAVIDSQQHKVTVIGNVDAETLIKKLLRSGKHAELWPEK 86
+HCE C + LK + G+ + D +Q ++V +V T+I L GK A +
Sbjct: 15 MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAII---- 70
Query: 87 KDKTSGKSKNNDKQKELSKDGQEVLDDRHKDTAEK 121
G K N + + Q+ D+ KDTA +
Sbjct: 71 ----RGAGKPNSSAVAILETFQKYTIDQKKDTAVR 101
>sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protein 3 OS=Mus musculus GN=Notch3
PE=1 SV=1
Length = 2318
Score = 34.7 bits (78), Expect = 0.75, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 194 PRHQQQYPSPPFMQQEHPPMYYPPHPAPLHGVSY----NTTYPTASTSYYAPSMHAYYNS 249
P Q P P QE PP Y AP HG Y + PT + PS H Y
Sbjct: 2191 PGPQLLNPGAPVSPQERPPPYLA---APGHGEEYPAAGTRSSPTKARFLRVPSEHPYLTP 2247
Query: 250 SYHRPGRYIPPDP 262
S P + P P
Sbjct: 2248 SPESPEHWASPSP 2260
>sp|P46549|SULU_CAEEL Serine/threonine-protein kinase SULU OS=Caenorhabditis elegans
GN=kin-18 PE=2 SV=1
Length = 982
Score = 33.9 bits (76), Expect = 1.3, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 156 SGTGGSGENVGNEPAAGITGSPAVAAAVDPIPSEVAPIPRHQQQYPSPPFMQQEHPPMYY 215
S T SG VG P+ G G+ A AV+P PS PIP Q P + E +
Sbjct: 424 SSTSTSG--VGTMPSHGSVGASITAIAVNPTPSPSEPIPTSQ------PTSKSESSSILE 475
Query: 216 PPHPAPL 222
H PL
Sbjct: 476 TAHDDPL 482
>sp|Q9R172|NOTC3_RAT Neurogenic locus notch homolog protein 3 OS=Rattus norvegicus
GN=Notch3 PE=2 SV=2
Length = 2319
Score = 33.5 bits (75), Expect = 1.6, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 194 PRHQQQYPSPPFMQQEHPPMYYPPHPAPLHGVSY----NTTYPTASTSYYAPSMHAYYNS 249
P Q P+ P E PP Y AP HG Y + PT + PS H Y
Sbjct: 2192 PGSQLLNPATPVSPHERPPPYLA---APGHGEEYPAAGTHSSPTKARFLRVPSEHPYLTP 2248
Query: 250 SYHRPGRYIPPDP 262
S P + P P
Sbjct: 2249 SPESPEHWASPSP 2261
>sp|Q6CF18|NTE1_YARLI Lysophospholipase NTE1 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=NTE1 PE=3 SV=1
Length = 1427
Score = 33.5 bits (75), Expect = 1.9, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 71/169 (42%), Gaps = 31/169 (18%)
Query: 49 AVIDSQQHKVTVIGNVDAETLIKKLLRSGKHAELWPEKKDKTSGKSKNNDKQKELSKDGQ 108
A I+ K ++ A++L K L R H + E +G+ ++ K+GQ
Sbjct: 712 AAIERMSDKYPMVHLTMAKSLTKVLSRLLLHLDFAMEWVQVRAGQ--------KIYKEGQ 763
Query: 109 E------VLDDRHKDTAEKPDEKSGDNPPGTGI-EGQGGNGSGGKKKKKKKGNSSGTGGS 161
E VL+ R + AE GD +GI G+ G+ GK +K S G G
Sbjct: 764 EADAIYIVLNGRVRSVAET----KGD----SGIVGGESGDAKDGKSHRKNL-TSIGEYGK 814
Query: 162 GENVGNEPAAGITGSPAVAAAVDPIPSEVAPIPRH-----QQQYPSPPF 205
GE+VG +T P+ A+ +E+A IPR YPS F
Sbjct: 815 GESVGELEVLTLTRRPSTLVAIR--DAELAKIPRALFESLALHYPSITF 861
>sp|Q8NUQ9|COPA_STAAW Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
MW2) GN=copA PE=3 SV=1
Length = 802
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 29 CEGCKKKVTKILKGIEGVYTAVID--SQQHKVTVI-GNVDAETLIKKLLRSGKHAELWPE 85
C C ++ K+L ++GV A ++ ++Q KV DA+ L+ ++ + G A +
Sbjct: 83 CAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 86 KKDKTSGKSK 95
KD+TS K++
Sbjct: 143 NKDQTSRKAE 152
>sp|Q6G6B7|COPA_STAAS Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
MSSA476) GN=copA PE=3 SV=1
Length = 802
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 29 CEGCKKKVTKILKGIEGVYTAVID--SQQHKVTVI-GNVDAETLIKKLLRSGKHAELWPE 85
C C ++ K+L ++GV A ++ ++Q KV DA+ L+ ++ + G A +
Sbjct: 83 CAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 86 KKDKTSGKSK 95
KD+TS K++
Sbjct: 143 NKDQTSRKAE 152
>sp|A8Z3F8|COPA_STAAT Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
USA300 / TCH1516) GN=copA PE=3 SV=1
Length = 802
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 29 CEGCKKKVTKILKGIEGVYTAVID--SQQHKVTVI-GNVDAETLIKKLLRSGKHAELWPE 85
C C ++ K+L ++GV A ++ ++Q KV DA+ L+ ++ + G A +
Sbjct: 83 CAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 86 KKDKTSGKSK 95
KD+TS K++
Sbjct: 143 NKDQTSRKAE 152
>sp|Q2FDV0|COPA_STAA3 Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
USA300) GN=copA PE=3 SV=1
Length = 802
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 29 CEGCKKKVTKILKGIEGVYTAVID--SQQHKVTVI-GNVDAETLIKKLLRSGKHAELWPE 85
C C ++ K+L ++GV A ++ ++Q KV DA+ L+ ++ + G A +
Sbjct: 83 CAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 86 KKDKTSGKSK 95
KD+TS K++
Sbjct: 143 NKDQTSRKAE 152
>sp|A6QK47|COPA_STAAE Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
Newman) GN=copA PE=3 SV=1
Length = 802
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 29 CEGCKKKVTKILKGIEGVYTAVID--SQQHKVTVI-GNVDAETLIKKLLRSGKHAELWPE 85
C C ++ K+L ++GV A ++ ++Q KV DA+ L+ ++ + G A +
Sbjct: 83 CAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 86 KKDKTSGKSK 95
KD+TS K++
Sbjct: 143 NKDQTSRKAE 152
>sp|Q5HCZ3|COPA_STAAC Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
COL) GN=copA PE=3 SV=1
Length = 802
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 29 CEGCKKKVTKILKGIEGVYTAVID--SQQHKVTVI-GNVDAETLIKKLLRSGKHAELWPE 85
C C ++ K+L ++GV A ++ ++Q KV DA+ L+ ++ + G A +
Sbjct: 83 CAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 86 KKDKTSGKSK 95
KD+TS K++
Sbjct: 143 NKDQTSRKAE 152
>sp|Q2FV64|COPA_STAA8 Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
NCTC 8325) GN=copA PE=1 SV=1
Length = 802
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 29 CEGCKKKVTKILKGIEGVYTAVID--SQQHKVTVI-GNVDAETLIKKLLRSGKHAELWPE 85
C C ++ K+L ++GV A ++ ++Q KV DA+ L+ ++ + G A +
Sbjct: 83 CAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 86 KKDKTSGKSK 95
KD+TS K++
Sbjct: 143 NKDQTSRKAE 152
>sp|Q9H0D2|ZN541_HUMAN Zinc finger protein 541 OS=Homo sapiens GN=ZNF541 PE=2 SV=2
Length = 1365
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 104 SKDGQEVLDDRHKDTAEKPDEKSGDNPPGTGIEGQGG---NGSGGKKKKKKKGNSSGTGG 160
S G L+D T ++ + G+ PPG + G+ NG+ + K +KG + GG
Sbjct: 682 SSKGTLDLEDIFPSTGQRQTQLGGEEPPGASLPGKQAPAENGAASRITKGEKGPACSRGG 741
Query: 161 SGENVGNEPAAGITGSPAVAAAVDPI----PSEVA 191
+GN A +G A +D PS+VA
Sbjct: 742 GYRLLGNPRAPRFSGFRKEKAKMDMCCAASPSQVA 776
>sp|Q2YWA3|COPA_STAAB Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=copA PE=3 SV=1
Length = 802
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 29 CEGCKKKVTKILKGIEGVYTAVID--SQQHKVTVI-GNVDAETLIKKLLRSGKHAELWPE 85
C C ++ K+L ++GV A ++ ++Q KV DA+ L+ ++ + G A +
Sbjct: 83 CAACSSRIEKVLNKMDGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 86 KKDKTSGKSK 95
KD+TS K++
Sbjct: 143 NKDQTSRKAE 152
>sp|Q7A3E6|COPA_STAAN Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
N315) GN=copA PE=1 SV=1
Length = 802
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 29 CEGCKKKVTKILKGIEGVYTAVID--SQQHKVTVI-GNVDAETLIKKLLRSGKHAELWPE 85
C C ++ K+L + GV A ++ ++Q KV DA+ L+ ++ + G A +
Sbjct: 83 CAACSSRIEKVLNKMNGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 86 KKDKTSGKSK 95
KD+TS K++
Sbjct: 143 NKDQTSRKAE 152
>sp|Q99R80|COPA_STAAM Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=copA PE=3 SV=1
Length = 802
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 29 CEGCKKKVTKILKGIEGVYTAVID--SQQHKVTVI-GNVDAETLIKKLLRSGKHAELWPE 85
C C ++ K+L + GV A ++ ++Q KV DA+ L+ ++ + G A +
Sbjct: 83 CAACSSRIEKVLNKMNGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 86 KKDKTSGKSK 95
KD+TS K++
Sbjct: 143 NKDQTSRKAE 152
>sp|A5IVY3|COPA_STAA9 Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
JH9) GN=copA PE=3 SV=1
Length = 802
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 29 CEGCKKKVTKILKGIEGVYTAVID--SQQHKVTVI-GNVDAETLIKKLLRSGKHAELWPE 85
C C ++ K+L + GV A ++ ++Q KV DA+ L+ ++ + G A +
Sbjct: 83 CAACSSRIEKVLNKMNGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 86 KKDKTSGKSK 95
KD+TS K++
Sbjct: 143 NKDQTSRKAE 152
>sp|A6U4T8|COPA_STAA2 Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
JH1) GN=copA PE=3 SV=1
Length = 802
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 29 CEGCKKKVTKILKGIEGVYTAVID--SQQHKVTVI-GNVDAETLIKKLLRSGKHAELWPE 85
C C ++ K+L + GV A ++ ++Q KV DA+ L+ ++ + G A +
Sbjct: 83 CAACSSRIEKVLNKMNGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 86 KKDKTSGKSK 95
KD+TS K++
Sbjct: 143 NKDQTSRKAE 152
>sp|A7X6S1|COPA_STAA1 Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain
Mu3 / ATCC 700698) GN=copA PE=3 SV=1
Length = 802
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 29 CEGCKKKVTKILKGIEGVYTAVID--SQQHKVTVI-GNVDAETLIKKLLRSGKHAELWPE 85
C C ++ K+L + GV A ++ ++Q KV DA+ L+ ++ + G A +
Sbjct: 83 CAACSSRIEKVLNKMNGVQNATVNLTTEQAKVDYYPEETDADKLVTRIQKLGYDASIKDN 142
Query: 86 KKDKTSGKSK 95
KD+TS K++
Sbjct: 143 NKDQTSRKAE 152
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.131 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,277,881
Number of Sequences: 539616
Number of extensions: 6963366
Number of successful extensions: 41602
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 967
Number of HSP's that attempted gapping in prelim test: 34677
Number of HSP's gapped (non-prelim): 6324
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)