BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023172
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C2N|A Chain A, Structure Of Human Mitochondrial Malonyltransferase
pdb|2C2N|B Chain B, Structure Of Human Mitochondrial Malonyltransferase
Length = 339
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 116/211 (54%), Gaps = 6/211 (2%)
Query: 61 DDALFADYKPTNAFLFPGQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPK 120
++ F + LFPGQG+Q VGMG+ + P ELY A +LG+DLLE+ +GP+
Sbjct: 16 ENLYFQSMGQCSVLLFPGQGSQVVGMGRGLLNYPRVRELYAAARRVLGYDLLELSLHGPQ 75
Query: 121 EKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFE 180
E LD T+ QPAI+V SLAAVE L +I++ G S+GE+ AL FAGA F
Sbjct: 76 ETLDRTVHCQPAIFVASLAAVEKLHHLQ--PSVIENCVAAAGFSVGEFAALVFAGAMEFA 133
Query: 181 DGLKLVKLRGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVD----EDNKVQIAN 236
+GL VK+R AMQEA++A M+S++G K C A + E+ +++N
Sbjct: 134 EGLYAVKIRAEAMQEASEAVPSGMLSVLGQPQSKFNFACLEAREHCKSLGIENPVCEVSN 193
Query: 237 YLCPGNYAVSGGVKGIEAVEAKAKSFKARMT 267
YL P +SG + + ++ + F R T
Sbjct: 194 YLFPDCRVISGHQEALRFLQKNSSKFHFRRT 224
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 121/209 (57%), Gaps = 14/209 (6%)
Query: 74 FLFPGQGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPA 132
FLF GQGAQ VGMGKE + + E++K++++ LG D+ E+C N P+ L+ T +QPA
Sbjct: 6 FLFAGQGAQYVGMGKEFFDNFEESKEVFKRSSEALGIDMEELCFNDPEGLLNKTEFTQPA 65
Query: 133 IYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAA 192
I T++A +L A D ++ ++CGLSLGEY+AL +GA +FEDG+KLVK RG
Sbjct: 66 IITTNMA---ILTALD---KLGVKSHISCGLSLGEYSALIHSGAINFEDGVKLVKKRGKF 119
Query: 193 MQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGI 252
MQEA G MV+++ + ++V ++ + ++ V+ ANY PG +SG + +
Sbjct: 120 MQEAVAEGIGGMVAVLRMTPEQVDEIIEKSSPY----GIVEGANYNSPGQIVISGELVAL 175
Query: 253 EAVEAKAKSFKAR---MTVISSFICIPIQ 278
E K R + V + F C +Q
Sbjct: 176 EKAMEFIKEVGGRAIKLPVSAPFHCSMLQ 204
>pdb|2G1H|A Chain A, Structure Of E.Coli Fabd Complexed With Glycerol
pdb|2G2O|A Chain A, Structure Of E.Coli Fabd Complexed With Sulfate
pdb|2G2Y|A Chain A, Structure Of E.Coli Fabd Complexed With Malonate
pdb|2G2Z|A Chain A, Structure Of E.coli Fabd Complexed With Malonyl-coa
Length = 308
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 99/182 (54%), Gaps = 10/182 (5%)
Query: 73 AFLFPGQGAQAVGM-GKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
AF+FPGQG+Q VGM A S P E + +A+ LG+DL + GP E+L+ T +QP
Sbjct: 4 AFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQP 63
Query: 132 AIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGA 191
A+ S+A + + + G + + G SLGEY+AL AG F D ++LV++RG
Sbjct: 64 ALLTASVALYRVWQQQGG-----KAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGK 118
Query: 192 AMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKG 251
MQEA GAM +IIGLD + + C+ E E V N+ PG ++G +
Sbjct: 119 FMQEAVPEGTGAMAAIIGLDDASIAKACE----EAAEGQVVSPVNFNSPGQVVIAGHKEA 174
Query: 252 IE 253
+E
Sbjct: 175 VE 176
>pdb|1MLA|A Chain A, The Escherichia Coli Malonyl-Coa:acyl Carrier Protein
Transacylase At 1.5-Angstroms Resolution. Crystal
Structure Of A Fatty Acid Synthase Component
Length = 309
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 99/182 (54%), Gaps = 10/182 (5%)
Query: 73 AFLFPGQGAQAVGM-GKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
AF+FPGQG+Q VGM A S P E + +A+ LG+DL + GP E+L+ T +QP
Sbjct: 5 AFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQP 64
Query: 132 AIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGA 191
A+ S+A + + + G + + G SLGEY+AL AG F D ++LV++RG
Sbjct: 65 ALLTASVALYRVWQQQGG-----KAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGK 119
Query: 192 AMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKG 251
MQEA GAM +IIGLD + + C+ E E V N+ PG ++G +
Sbjct: 120 FMQEAVPEGTGAMAAIIGLDDASIAKACE----EAAEGQVVSPVNFNSPGQVVIAGHKEA 175
Query: 252 IE 253
+E
Sbjct: 176 VE 177
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae
Length = 307
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/187 (39%), Positives = 106/187 (56%), Gaps = 13/187 (6%)
Query: 72 NAFLFPGQGAQAVGMGKE-AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQ 130
AFLF GQGAQ +GMG++ P E +A+ +LG+DL + ++KL+ T +Q
Sbjct: 4 TAFLFAGQGAQYLGMGRDFYDQYPIVKETIDRASQVLGYDL-RYLIDTEEDKLNQTRYTQ 62
Query: 131 PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 190
PAI TS+A LL+ + G Q D+ GLSLGEY+AL +GA FED + LV RG
Sbjct: 63 PAILATSVAIYRLLQEK--GYQ----PDMVAGLSLGEYSALVASGALDFEDAVALVAKRG 116
Query: 191 AAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVK 250
A M+EAA A G MV+++ + +++ C Q+ E V ANY P ++G V
Sbjct: 117 AYMEEAAPADSGKMVAVLNTPVEVIEEAC----QKASELGVVTPANYNTPAQIVIAGEVV 172
Query: 251 GIE-AVE 256
++ AVE
Sbjct: 173 AVDRAVE 179
>pdb|3QAT|A Chain A, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
pdb|3QAT|B Chain B, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
Length = 318
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 109/199 (54%), Gaps = 8/199 (4%)
Query: 73 AFLFPGQGAQAVGMGKE-AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
AF FPGQG+Q +GMGK + AA ++++ +D L L +I GP + L T +QP
Sbjct: 8 AFTFPGQGSQLIGMGKVLTEQFVAARMVFEEVDDALSEKLSDIIFEGPADVLTLTANAQP 67
Query: 132 AIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGA 191
A+ S+A + ++ G + V G SLGEY+AL AG FS D +L+++RG
Sbjct: 68 ALMAVSMAVIRVMEQL--GLNVEKKVKFVAGHSLGEYSALCAAGTFSLTDTARLLRIRGN 125
Query: 192 AMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKG 251
AMQ A +G+M ++IGLD V+++C+ V E+ QIAN G +SG K
Sbjct: 126 AMQAAVAVGEGSMAALIGLDEKDVEEICEI----VAEEGLCQIANDNGGGQIVISGEAKA 181
Query: 252 IE-AVEAKAKSFKARMTVI 269
+E AVE ++ R ++
Sbjct: 182 VETAVEVASQKGAKRAVLL 200
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus
Length = 316
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 103/194 (53%), Gaps = 12/194 (6%)
Query: 73 AFLFPGQGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
A +FPGQGAQ VGM ++ + A E+ A L FD+LE + KL T +QP
Sbjct: 13 AIIFPGQGAQKVGMAQDLFNNNDQATEILTSAAKTLDFDILETMFTDEEGKLGETENTQP 72
Query: 132 AIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGA 191
A+ S A + L+ + D T G SLGEY++L A SFED +K+V+ RG
Sbjct: 73 ALLTHSSALLAALKNLNP--------DFTMGHSLGEYSSLVAADVLSFEDAVKIVRKRGQ 124
Query: 192 AMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKG 251
M +A G+M +++GLD DKV ++C + + +D ++ AN CPG VSG
Sbjct: 125 LMAQAFPTGVGSMAAVLGLDFDKVDEICKSLSS---DDKIIEPANINCPGQIVVSGHKAL 181
Query: 252 IEAVEAKAKSFKAR 265
I+ + K KS A+
Sbjct: 182 IDELVEKGKSLGAK 195
>pdb|3EZO|A Chain A, Crystal Structure Of Acyl-Carrier-Protein S-
Malonyltransferase From Burkholderia Pseudomallei 1710b
Length = 318
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 93/181 (51%), Gaps = 9/181 (4%)
Query: 73 AFLFPGQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPA 132
AF+FPGQG+Q+VGM V E +A+D LG D+ ++ +GP ++L+ T +QP
Sbjct: 12 AFVFPGQGSQSVGMLNAFADVAVVRETLDEASDALGQDIGKLIADGPADELNLTTNTQPV 71
Query: 133 IYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAA 192
+ + A + G Q + G SLGEYTAL AGA +F D L LV+ R A
Sbjct: 72 MLTAAYACYRAWQQAGGAQP-----SIVAGHSLGEYTALVAAGAIAFRDALPLVRFRAQA 126
Query: 193 MQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKGI 252
MQ A G M +I+GLD D V+ +C E V+ N+ P ++G GI
Sbjct: 127 MQTAVPVGVGGMAAILGLDDDTVRAVC----AEASATGVVEAVNFNAPAQVVIAGTKAGI 182
Query: 253 E 253
E
Sbjct: 183 E 183
>pdb|3K89|A Chain A, Structure Of X. Oryzae Pv. Oryzae Kacc10331, Xoo0880(Fabd)
Complexed With Glycerol
pdb|3R97|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Fabd), Xoo0880, From Xanthomonas Oryzae
Pv. Oryzae Kacc10331
Length = 314
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 98/179 (54%), Gaps = 12/179 (6%)
Query: 71 TNAFLFPGQGAQAVGMGKEAQSV-PAAAELYKKANDILGFDLLEICTNGPKEKLDSTIIS 129
T AF+FPGQG+Q++GM E + P E + +A++ G DL + GP+E L+ T +
Sbjct: 5 TLAFVFPGQGSQSLGMLAELSELHPQIRETFAEASEGAGVDLWALSQGGPEEMLNRTEYT 64
Query: 130 QPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLR 189
QPA+ +A L A+ G + + G SLGEYTAL AG S DG LV+LR
Sbjct: 65 QPALLAAGVAVWRLWTAQRGQRPAL-----LAGHSLGEYTALVAAGVLSLHDGAHLVRLR 119
Query: 190 GAAMQEAADAAKGAMVSIIGLDSDKVQQLC-DAANQEVDEDNKVQIANYLCPGNYAVSG 247
G MQ AA A GAM +++G + V ++C +AA +V V AN+ PG + G
Sbjct: 120 GQFMQAAAPAGVGAMAAVLGAEDAVVLEVCAEAAGSQV-----VVPANFNSPGQIVIGG 173
>pdb|3H0P|A Chain A, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium.
pdb|3H0P|B Chain B, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium
Length = 312
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 98/182 (53%), Gaps = 10/182 (5%)
Query: 73 AFLFPGQGAQAVG-MGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
AF+FPGQG+Q+VG + + A + P E + +A+ LG+DL + GP E+L+ T +QP
Sbjct: 8 AFVFPGQGSQSVGXLAEXAANYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQP 67
Query: 132 AIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGA 191
A+ S+A + + + G + + G SLGEY+AL AG +F D ++LV+ RG
Sbjct: 68 ALLTASVALWRVWQQQGGKXPALXA-----GHSLGEYSALVCAGVINFADAVRLVEXRGK 122
Query: 192 AMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKG 251
QEA G +IIGLD + + C+ E E V N+ PG ++G +
Sbjct: 123 FXQEAVPEGTGGXSAIIGLDDASIAKACE----ESAEGQVVSPVNFNSPGQVVIAGHKEA 178
Query: 252 IE 253
+E
Sbjct: 179 VE 180
>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase
Length = 286
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 98/177 (55%), Gaps = 18/177 (10%)
Query: 72 NAFLFPGQGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQ 130
A++FPGQG+QA GMG+ + PA L +A+ +LG+ + +C + P ++L T +Q
Sbjct: 2 KAYMFPGQGSQAKGMGRALFDAFPA---LTARADGVLGYSIRALCQDDPDQRLSQTQFTQ 58
Query: 131 PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 190
PA+YV + A+ L+ R+ D G SLGE++AL AG F FE GL LVK RG
Sbjct: 59 PALYVVN--ALSYLKRREEEA----PPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRG 112
Query: 191 AAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSG 247
M DA G M ++IGLD ++V++L D + V IAN P +SG
Sbjct: 113 ELM---GDARGGGMAAVIGLDEERVRELLDQ-----NGATAVDIANLNSPSQVVISG 161
>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In
Complex With Acetate
Length = 281
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 98/177 (55%), Gaps = 18/177 (10%)
Query: 72 NAFLFPGQGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQ 130
A++FPGQG+QA GMG+ + PA L +A+ +LG+ + +C + P ++L T +Q
Sbjct: 2 KAYMFPGQGSQAKGMGRALFDAFPA---LTARADGVLGYSIRALCQDDPDQRLSQTQFTQ 58
Query: 131 PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 190
PA+YV + A+ L+ R+ D G SLGE++AL AG F FE GL LVK RG
Sbjct: 59 PALYVVN--ALSYLKRREEEA----PPDFLAGHSLGEFSALFAAGVFDFETGLALVKKRG 112
Query: 191 AAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSG 247
M DA G M ++IGLD ++V++L D + V IAN P +SG
Sbjct: 113 ELM---GDARGGGMAAVIGLDEERVRELLDQ-----NGATAVDIANLNSPSQVVISG 161
>pdb|3TQE|A Chain A, Structure Of The Malonyl Coa-Acyl Carrier Protein
Transacylase (Fabd) From Coxiella Burnetii
Length = 316
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 105/196 (53%), Gaps = 12/196 (6%)
Query: 73 AFLFPGQGAQAVG-MGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
AF+FPGQG+Q +G + + P E +++A+ L +DL + +GP+E+LD T +QP
Sbjct: 9 AFVFPGQGSQHLGXLAELGLQQPIVLETFQQASSALAYDLWALVQHGPQERLDQTQFTQP 68
Query: 132 AIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGA 191
A+ +A A G + V G SLGEY AL AGA FE+ +KLV+ RG
Sbjct: 69 ALLTADVAIFRCWEALGGPKP-----QVXAGHSLGEYAALVCAGALKFEEAVKLVEKRGQ 123
Query: 192 AMQEAADAAKGAMVSIIGLDSDKVQQLCD-AANQEVDEDNKVQIANYLCPGNYAVSGGVK 250
QEA +GA +IIGL+ +++ +C+ AA +V VQ AN +SG +
Sbjct: 124 YXQEAVPVGEGAXGAIIGLNEAEIESICENAALGQV-----VQPANLNSTDQTVISGHSE 178
Query: 251 GIEAVEAKAKSFKARM 266
++ AK+ A++
Sbjct: 179 AVDRALNXAKTEGAKI 194
>pdb|3G87|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Burkholderia Pseudomallei Using Dried
Seaweed As Nucleant Or Protease
Length = 394
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 15/200 (7%)
Query: 72 NAFLFPGQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
N F+FPGQG+QA GMG A+L +A+ +LG+ + +C + P+++L T +QP
Sbjct: 7 NTFMFPGQGSQAKGMG--GALFDRFADLTAQADAVLGYSIRALCVDDPRDELGRTQFTQP 64
Query: 132 AIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGA 191
A+YV + A + D G+ + D G SLGE+ AL AG F FE GLKLV R
Sbjct: 65 ALYVVN-ALTYYAKCEDSGE----TPDFLAGHSLGEFNALLAAGCFDFETGLKLVARRAE 119
Query: 192 AMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVKG 251
M +A D GAM +I+ +++++ D + VD IAN P +SG
Sbjct: 120 LMSQARD---GAMAAIVNASREQIERTLD-EHGLVD----TAIANDNTPSQLVISGPAHE 171
Query: 252 IEAVEAKAKSFKARMTVISS 271
I EA + + R +++
Sbjct: 172 IARAEALFQHDRVRYLRLNT 191
>pdb|3HJV|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
pdb|3HJV|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 312
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 99/183 (54%), Gaps = 12/183 (6%)
Query: 73 AFLFPGQGAQAVG-MGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
A +FPGQG+QAVG + A+ + + +A+++LG+DL + +GP E L+ T +QP
Sbjct: 10 AIVFPGQGSQAVGXLADLAEQYAVVKQTFAEASEVLGYDLWALVQDGPVEDLNQTFRTQP 69
Query: 132 AIYVTSLAAVELLRARDGGQQI-IDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 190
A+ S+A + QQ+ ++ V G SLGEY+AL AG F+ +KLV+LRG
Sbjct: 70 ALLAASVAIWRVW------QQLGLEQPAVLAGHSLGEYSALVCAGVIDFKQAIKLVELRG 123
Query: 191 AAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVK 250
Q+A A GA +IIGL+ + + + C A Q V N+ PG ++G
Sbjct: 124 QLXQQAVPAGTGAXYAIIGLEDEAIAKACADAAQ----GEVVSPVNFNSPGQVVIAGQKD 179
Query: 251 GIE 253
+E
Sbjct: 180 AVE 182
>pdb|2CUY|A Chain A, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
pdb|2CUY|B Chain B, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
Length = 305
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/200 (35%), Positives = 102/200 (51%), Gaps = 16/200 (8%)
Query: 73 AFLFPGQGAQAVGMGKEA-QSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
A LFPGQG+ VGMG+ ++ PAA E+ +A L LL++ GP+E L T QP
Sbjct: 3 AALFPGQGSHRVGMGRALYEASPAAKEVLDRAEAALP-GLLKLMWEGPEEALTLTENQQP 61
Query: 132 AIYVTSLAAVE-LLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 190
A+ AA L A GG+ + G SLGE+TA AG ED L+LV+LRG
Sbjct: 62 ALLAAGYAAYRAFLEA--GGK----PPALAAGHSLGEWTAHVAAGTLELEDALRLVRLRG 115
Query: 191 AAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVK 250
MQEA +GAM +++ L +++Q+ + V+IAN P +SG +
Sbjct: 116 RYMQEAVPVGEGAMAAVLKLPLEEIQKALEGL-------EGVEIANLNAPEQTVISGRRQ 168
Query: 251 GIEAVEAKAKSFKARMTVIS 270
+E + K +AR+ +
Sbjct: 169 AVEEAAERLKERRARVVFLP 188
>pdb|2H1Y|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
pdb|2H1Y|B Chain B, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
Length = 321
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 108/211 (51%), Gaps = 19/211 (9%)
Query: 73 AFLFPGQGAQAVGMGKE-AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQP 131
A LFPGQG+Q +GMGK + A EL+++A++ L D+ + E L + +QP
Sbjct: 16 ALLFPGQGSQCIGMGKSFYEGHTLAKELFERASNALKVDMKKTLFE-ENELLKESAYTQP 74
Query: 132 AIYVTSLAAVELLRAR-DGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRG 190
AIY+ S A +LL + +GG + + ++ G SLGE +A++ +GA FE LKL RG
Sbjct: 75 AIYLVSYIAYQLLNKQANGGLKPVFAL----GHSLGEVSAVSLSGALDFEKALKLTHQRG 130
Query: 191 AAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGGVK 250
MQEA +M+ ++G+ + + LC V AN+ G V GVK
Sbjct: 131 KMMQEACANKDASMMVVLGVSEESLLSLCQRTKN-------VWCANF-NGGMQVVLAGVK 182
Query: 251 -GIEAVEAKAKSFKARMTVISSFICIPIQCH 280
++A+E K A+ V F+ + + H
Sbjct: 183 DDLKALEPTLKEMGAKRVV---FLEMSVASH 210
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 67.4 bits (163), Expect = 9e-12, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 111/234 (47%), Gaps = 31/234 (13%)
Query: 70 PTNAFLFPGQGAQAVGMGKEAQSVPAAA-ELYKKAN----DILGFDLLEICTNGPKEKLD 124
P + FPGQG Q GMG E ++ AA +++ A+ + LGF +L + + P +
Sbjct: 1346 PKTVYAFPGQGIQHKGMGMEVRARSKAARKVWDSADKFTRETLGFSVLHVVRDNPTSLIA 1405
Query: 125 STI----------ISQ-PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALA- 172
S + ++Q + + ++AA ++ R+ G + + + CG S+GEYTALA
Sbjct: 1406 SGVHYHHPDGVLFLTQFTQVAMATVAAAQVAEMREQGAFVEGA--IACGHSVGEYTALAC 1463
Query: 173 FAGAFSFEDGLKLVKLRGAAMQEAADAAK---------GAMVSIIGLDSDKVQQLCDAAN 223
+G + E L++V RG+ M + + S I LD V+ +
Sbjct: 1464 VSGVYELEALLEVVFHRGSKMHDIVPRDELGRSNYRLAAIRPSQIDLDDADVKDFVAEIS 1523
Query: 224 QEVDEDNKVQIANYLCPGN-YAVSGGVKGIEAVEAKAKSFKARMTVISSFICIP 276
+ E ++I N+ G+ YA++G V G+EA+E + + + SFI +P
Sbjct: 1524 ERTGE--FLEIVNFNLRGSQYAIAGTVAGLEALEEEIERRRQITGGKRSFILVP 1575
>pdb|2CDH|4 Chain 4, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|5 Chain 5, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|6 Chain 6, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|7 Chain 7, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|8 Chain 8, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|9 Chain 9, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|M Chain M, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|N Chain N, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|O Chain O, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|P Chain P, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Q Chain Q, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|R Chain R, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 305
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 74 FLFPGQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAI 133
+ PGQGAQ G + ++P AA+ +D +G DL T +++ T ++QP
Sbjct: 5 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQPL- 63
Query: 134 YVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAM 193
L A +L A G G S+GE TA FAG L LV+ RG AM
Sbjct: 64 ----LVAAGILSAAALGTGFTPGA--VAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAM 117
Query: 194 QEAADAAKGAMVSIIGLDSD 213
EAA + M +++G D +
Sbjct: 118 AEAAAVTETGMSALLGGDPE 137
>pdb|2CF2|B Chain B, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|K Chain K, Architecture Of Mammalian Fatty Acid Synthase
Length = 304
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 74 FLFPGQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAI 133
+ PGQGAQ G + ++P AA+ +D +G DL T +++ T ++QP
Sbjct: 4 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQPL- 62
Query: 134 YVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKLRGAAM 193
L A +L A G G S+GE TA FAG L LV+ RG AM
Sbjct: 63 ----LVAAGILSAAALGTGFTPGA--VAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAM 116
Query: 194 QEAADAAKGAMVSIIGLDSD 213
EAA + M +++G D +
Sbjct: 117 AEAAAVTETGMSALLGGDPE 136
>pdb|1NM2|A Chain A, "malonyl-Coa:acp Transacylase"
Length = 317
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 13/148 (8%)
Query: 74 FLFPGQGAQAVGMGKEAQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDSTIISQPAI 133
+ PGQGAQ G + ++P AA+ +D +G DL T +++ T ++QP
Sbjct: 5 LVAPGQGAQTPGFLTDWLALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQPL- 63
Query: 134 YVTSLAAVELLRARDGGQQ--IIDSVD------VTCGLSLGEYTALAFAGAFSFEDGLKL 185
L A +L A G Q + D+ G S+GE TA FAG L L
Sbjct: 64 ----LVAAGILSAAALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTAALSL 119
Query: 186 VKLRGAAMQEAADAAKGAMVSIIGLDSD 213
V+ RG AM EAA + M +++G D +
Sbjct: 120 VRRRGLAMAEAAAVTETGMSALLGGDPE 147
>pdb|2QJ3|A Chain A, Mycobacterium Tuberculosis Fabd
pdb|2QJ3|B Chain B, Mycobacterium Tuberculosis Fabd
Length = 322
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 13/148 (8%)
Query: 73 AFLFPGQGAQAVGMGKEAQSVPAAAE---LYKKANDILGFDLLEICTNGPKEKLDSTIIS 129
A L PGQG+Q GM +P AA+ + KA D+ DL + T E++ T ++
Sbjct: 23 ALLAPGQGSQTEGMLSPWLQLPGAADQIAAWSKAADL---DLARLGTTASTEEITDTAVA 79
Query: 130 QPAIYVTSLAAVELLRAR--DGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVK 187
QP I +L A + L R G+ +I G S+GE A A AG + +D + L
Sbjct: 80 QPLIVAATLLAHQELARRCVLAGKDVI-----VAGHSVGEIAAYAIAGVIAADDAVALAA 134
Query: 188 LRGAAMQEAADAAKGAMVSIIGLDSDKV 215
RGA M +A M +++G D +V
Sbjct: 135 TRGAEMAKACATEPTGMSAVLGGDETEV 162
>pdb|2QC3|A Chain A, Crystal Structure Of Mcat From Mycobacterium Tuberculosis
Length = 303
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 13/148 (8%)
Query: 73 AFLFPGQGAQAVGMGKEAQSVPAAAE---LYKKANDILGFDLLEICTNGPKEKLDSTIIS 129
A L PGQG+Q GM +P AA+ + KA D+ DL + T E++ T ++
Sbjct: 4 ALLAPGQGSQTEGMLSPWLQLPGAADQIAAWSKAADL---DLARLGTTASTEEITDTAVA 60
Query: 130 QPAIYVTSLAAVELLRAR--DGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVK 187
QP I +L A + L R G+ +I G S+GE A A AG + +D + L
Sbjct: 61 QPLIVAATLLAHQELARRCVLAGKDVI-----VAGHSVGEIAAYAIAGVIAADDAVALAA 115
Query: 188 LRGAAMQEAADAAKGAMVSIIGLDSDKV 215
RGA M +A M +++G D +V
Sbjct: 116 TRGAEMAKACATEPTGMSAVLGGDETEV 143
>pdb|4AMN|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
pdb|4AMP|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 119 PKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFS 178
P E +D T ++QPAI SLA + L R G + + G SLGE AL++AGA
Sbjct: 141 PAEPVD-TAVAQPAIIADSLAGIRWLD-RLGARPV-----GALGHSLGELAALSWAGALD 193
Query: 179 FEDGLKLVKLRGAAMQEAADAAKGAMVSI 207
+D L L + RG AM A +A G M+S+
Sbjct: 194 ADDTLALARARGEAMSAATEAPSG-MLSL 221
>pdb|4AMM|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 401
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 119 PKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFS 178
P E +D T ++QPAI SLA + L R G + + G SLGE AL++AGA
Sbjct: 138 PAEPVD-TAVAQPAIIADSLAGIRWLD-RLGARPV-----GALGHSLGELAALSWAGALD 190
Query: 179 FEDGLKLVKLRGAAMQEAADAAKGAMVSI 207
+D L L + RG AM A +A G M+S+
Sbjct: 191 ADDTLALARARGEAMSAATEAPSG-MLSL 218
>pdb|4AMO|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 119 PKEKLDSTIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFS 178
P E +D T ++QPAI SLA + L R G + + G SLGE AL++AGA
Sbjct: 141 PAEPVD-TAVAQPAIIADSLAGIRWLD-RLGARPV-----GALGHSLGELAALSWAGALD 193
Query: 179 FEDGLKLVKLRGAAMQEAADAAKGAMVSI 207
+D L L + RG AM A +A G M+S+
Sbjct: 194 ADDTLALARARGEAMSVATEAPSG-MLSL 221
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 48.5 bits (114), Expect = 4e-06, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 74 FLFPGQGAQAVGMGKE--------AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLDS 125
FLFPGQG+Q GMG E A + A E D D+L P LD
Sbjct: 536 FLFPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLRQAPGAP--GLDR 593
Query: 126 TIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKL 185
+ QP ++ ++ EL R+ ++ V G S GE A AGA + ED KL
Sbjct: 594 VDVVQPVLFAVMVSLAELWRSYG-----VEPAAVV-GHSQGEIAAAHVAGALTLEDAAKL 647
Query: 186 VKLRGAAMQEAADAAKGAMVSI 207
V R M+ + A V++
Sbjct: 648 VVGRSRLMRSLSGEGGMAAVAL 669
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 63/187 (33%)
Query: 69 KPTNAFLFPGQGAQAVGMGKEA-QSVPAAAELYKKAN----DILGFDLLEICTNGP---- 119
+P F+F GQG+Q GMG + ++ AA +++ +A+ D GF +L+I N P
Sbjct: 1659 QPVTTFVFTGQGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLT 1718
Query: 120 -----------------------------KEKL--------------------DSTIISQ 130
EK+ +T +Q
Sbjct: 1719 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1778
Query: 131 PAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALA-FAGAFSFEDGLKLVKLR 189
PA+ + AA E L+++ +I + G SLGEY ALA A S E +++V R
Sbjct: 1779 PALTLMEKAAFEDLKSKG----LIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1834
Query: 190 GAAMQEA 196
G MQ A
Sbjct: 1835 GMTMQVA 1841
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 69 KPTNAFLFPGQGAQAVGMGKEAQSV-PAAAELYKKAN----DILGFDLLEICTNGPKE 121
+P A++F GQG+Q GMG + + P A E++ +A+ + GF +++I N PKE
Sbjct: 1669 QPVTAYVFTGQGSQEQGMGMDLYATSPVAKEVWDRADKHFRENYGFSIIDIVKNNPKE 1726
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 188 LRGAAMQEAADAAKGA---MVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYA 244
L + +Q++ + +G M+SI L VQ+ DA NQ + ED + I+ N+
Sbjct: 313 LAPSTLQDSVENGEGTPTPMLSIRDLTRSAVQEHIDATNQHLPEDRHIGISLVNSARNFV 372
Query: 245 VSGGVKGIEAVEAKAKSFKA 264
V+G + + + + KA
Sbjct: 373 VTGPPISLYGLNLRLRKVKA 392
>pdb|3TZW|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Orthorhombic Apoform At 2.6 A
pdb|3TZX|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZX|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZY|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZY|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZZ|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
pdb|3TZZ|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
Length = 491
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 17/193 (8%)
Query: 74 FLFPGQGAQAVGMGKEA--QSVPAAAELYK---KANDILGFDLLEICTNGPKEKLDSTII 128
++ G GAQ MGK ++ AA + K D LG+ +LE+ + ++ T
Sbjct: 143 WVLAGFGAQHRKMGKSLYLRNEVFAAWIEKVDALVQDELGYSVLELILDDAQDYGIET-- 200
Query: 129 SQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLKLVKL 188
+Q I+ +A ELLR + G SLGE + FAG S D + +
Sbjct: 201 TQVTIFAIQIALGELLRHHGAKPAAV------IGQSLGEAASAYFAGGLSLRDATRAICS 254
Query: 189 RGAAMQEAADAAKGAMVSIIGLDSDKVQQLCDAANQEVDEDNKVQIANYLCPGNYAVSGG 248
R M E G + ++ L V+ D + + +++ Y P + G
Sbjct: 255 RSHLMGEGEAMLFGEYIRLMAL----VEYSADEIREVFSDFPDLEVCVYAAPTQTVIGGP 310
Query: 249 VKGIEAVEAKAKS 261
+ ++A+ A+A++
Sbjct: 311 PEQVDAILARAEA 323
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 63/177 (35%)
Query: 79 QGAQAVGMGKEA-QSVPAAAELYKKAN----DILGFDLLEICTNGP-------------- 119
QG+Q GMG + ++ AA +++ +A+ D GF +L+I N P
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 120 ---------------------------------------KEKLDSTIISQPAIYVTSLAA 140
K L +T +QPA+ + AA
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAA 1743
Query: 141 VELLRARDGGQQIIDSVDVTCGLSLGEYTALA-FAGAFSFEDGLKLVKLRGAAMQEA 196
E L+++ +I + G SLGEY ALA A S E +++V RG MQ A
Sbjct: 1744 FEDLKSKG----LIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 37.0 bits (84), Expect = 0.013, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 73 AFLFPGQGAQAVGMGKE--------AQSVPAAAELYKKANDILGFDLLEICTNGPKEKLD 124
A +FPGQGAQ G ++ A S+ D DLL LD
Sbjct: 554 AXVFPGQGAQWQGXARDLLRESQVFADSIRDCERALAPHVDWSLTDLLS-----GARPLD 608
Query: 125 STIISQPAIYVTSLAAVELLRARDGGQQIIDSVDVTCGLSLGEYTALAFAGAFSFEDGLK 184
+ QPA++ ++ L R+ ++ V G S GE A AGA + ED K
Sbjct: 609 RVDVVQPALFAVXVSLAALWRSHG-----VEPAAVV-GHSQGEIAAAHVAGALTLEDAAK 662
Query: 185 LVKLRGAAMQ 194
LV +R ++
Sbjct: 663 LVAVRSRVLR 672
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,299,008
Number of Sequences: 62578
Number of extensions: 278999
Number of successful extensions: 734
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 44
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)