RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 023173
(286 letters)
>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals.Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in(1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles.This model is specific for the
eukaryotic members members of this family [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 559
Score = 116 bits (293), Expect = 1e-29
Identities = 62/190 (32%), Positives = 97/190 (51%), Gaps = 22/190 (11%)
Query: 3 LMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFVAEIFIF 62
L++YLSY+ AE +LSGIL + FCGI M Y N++ S+ T K+ LS ++E IF
Sbjct: 245 LISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIF 304
Query: 63 LYVGMDALD---IEKWRFVKGSPGTSVAASAMLMGLIMAGRAAFVFPLSFLTNLAKKSPT 119
+++G+ + W FV + + +I R V LS++TN +
Sbjct: 305 IFLGVSLVTENHEWNWAFV---------VATLSFCVIY--RVLGVRTLSWITNEFRPVE- 352
Query: 120 EKISIKQQVIIWWAGLMRGAVSMALAYNQFTRSGHTQLRENAIMITSTITVVLFSTVVFG 179
I K Q++I++AGL RGAV+ ALA + +T+T+ VV F+ + G
Sbjct: 353 --IPYKDQLVIFYAGL-RGAVAFALALL----LDEKIFPYKFLFVTTTLVVVFFTVIFQG 405
Query: 180 LMTKPLIRLL 189
KPL+ +L
Sbjct: 406 GTIKPLVEVL 415
>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic
ion transport and metabolism].
Length = 429
Score = 88.5 bits (220), Expect = 7e-20
Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 15/189 (7%)
Query: 2 VLMAYLSYMLAELFYLSGILTVFFCGIVMSHYT-WHNVTESSRVTTKHTFATLSFVAEIF 60
+L+A+ +Y+LAE +SGIL V G+V+ + S+R+ + L F+
Sbjct: 231 LLLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGL 290
Query: 61 IFLYVGMDALDIEKWRFVKGSPGTSVAASAMLMGLIMAGRAAFVFPLSFLTNLAKKSPTE 120
+F+ +G + + + ++ R +VF + +
Sbjct: 291 LFVLLGAQLPLSLLLALG-------LLGLLVALVAVLLARPLWVFL---SLKGSNLKLRD 340
Query: 121 KISIKQQVIIWWAGLMRGAVSMALAYNQFTRSGHTQLRENAIMITSTITVVLFSTVVFGL 180
+ ++++ + WAG RG VS+ALA +++ V+LFS +V GL
Sbjct: 341 PLPWRERLFLSWAG-PRGVVSLALA---LLIPLELPGPARELILFIVFLVILFSLLVQGL 396
Query: 181 MTKPLIRLL 189
PL + L
Sbjct: 397 TLPPLAKKL 405
>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H
antiporters are key transporters in maintaining the pH
of actively metabolising cells. The molecular mechanisms
of antiport are unclear. These antiporters contain 10-12
transmembrane regions (M) at the amino-terminus and a
large cytoplasmic region at the carboxyl terminus. The
transmembrane regions M3-M12 share identity with other
members of the family. The M6 and M7 regions are highly
conserved. Thus, this is thought to be the region that
is involved in the transport of sodium and hydrogen
ions. The cytoplasmic region has little similarity
throughout the family.
Length = 370
Score = 78.8 bits (195), Expect = 1e-16
Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 27/182 (14%)
Query: 2 VLMAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFVAEIFI 61
+ +A L+ +LAEL LSGIL F G+V+S+Y ++ ++ K +
Sbjct: 216 LALALLAALLAELLGLSGILGAFLAGLVLSNY-----AFANELSEK-LEPFGYGLFLPLF 269
Query: 62 FLYVGMDALDIEKWRFVKGSPGTSVAASAMLMGLIMAGRAAFVFPLSFLTNLAKKSPTEK 121
F+ VG+ + + + +L+ I+ G+ VF L+ L
Sbjct: 270 FVSVGLSL-------DLSSLLLSLLLLVLLLLVAILLGKLLGVFLLARLL---------G 313
Query: 122 ISIKQQVIIWWAGLMRGAVSMALAYNQFTRSGHTQLRENAIMITSTITVVLFSTVVFGLM 181
+S+++ +I+ + GL RGAVS+ALA G + + T + VVL +T++ L+
Sbjct: 314 LSLREALIVGFGGLQRGAVSLALAA-----IGLQLGLIDRELYTLLVAVVLLTTLLKPLL 368
Query: 182 TK 183
K
Sbjct: 369 KK 370
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 58.7 bits (142), Expect = 8e-10
Identities = 39/194 (20%), Positives = 91/194 (46%), Gaps = 11/194 (5%)
Query: 2 VLMAYLSYMLAELFYLSGILTVFFCGIVMSHY-TWHNVTESSRVTTKHTFATLSFVAEIF 60
+L + ++LAE F+ SG++ V G+++++Y +++ ++R+ ++ + F+
Sbjct: 215 ILAPFAGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGI 274
Query: 61 IFLYVGMD---ALDIEKWRFVKGSPGTSVAASAMLMGLIMAGRA--AFVFPLSFLTNLAK 115
IF+ +G+ + W+ + +P + A +I F++ + +N
Sbjct: 275 IFILIGVQTPGTIF-SAWKEILVAPAAVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFL 333
Query: 116 KSPTEKISIKQQVIIWWAGLMRGAVSMA--LAYNQFTRSGHTQLRENAIMITSTITVVLF 173
K + + + ++ WAGL RGA+ +A L++ SG ++ + V+LF
Sbjct: 334 KKKPMEFGTRWKHVVSWAGL-RGAIPLALALSFPNQLLSGMAFPARYELVFLAAG-VILF 391
Query: 174 STVVFGLMTKPLIR 187
S +V G+ ++
Sbjct: 392 SLLVQGISLPIFVK 405
>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a
unique C-terminal domain [Inorganic ion transport and
metabolism].
Length = 574
Score = 47.8 bits (114), Expect = 3e-06
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 22/141 (15%)
Query: 5 AYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFVAEIFIFLY 64
L + L SGIL V+ G+++ N +R F L+++A+I +FL
Sbjct: 230 GLLIFSLTGAIGGSGILAVYLAGLLLG-----NRPIRARHGILRFFDGLAWLAQILMFLV 284
Query: 65 VGMDALDIEKWRFVKGSPGTSVAASAMLMGLIMAGRAAFVFPLSFLTNLAKKSPTEKISI 124
+G+ V S +A A+L+ L M PL+ L + +
Sbjct: 285 LGL---------LVTPSQLLPIAIPAILLSLWM---IFVARPLAVFLGLIPF----RFNR 328
Query: 125 KQQVIIWWAGLMRGAVSMALA 145
++++ + W GL RGAV + LA
Sbjct: 329 REKLFVSWVGL-RGAVPIILA 348
>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed.
Length = 562
Score = 45.2 bits (108), Expect = 2e-05
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 28/145 (19%)
Query: 4 MAYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFVAEIFIFL 63
A L + L SG L V+ G+V+ N R + F L+++A+I +FL
Sbjct: 231 GALLIFALTAALGGSGFLAVYLAGLVLG-----NRPIRHRHSILRFFDGLAWLAQIGMFL 285
Query: 64 YVGMDALDIEKWRFVKGSPGTSVAASAMLMGLIMAGRAAFVF---PLSFLTNLAKKSPTE 120
+G+ V S +A A+L+ L + + PL+ +L
Sbjct: 286 VLGL---------LVTPSRLLDIALPALLLALFL------ILVARPLAVFLSLLPF---- 326
Query: 121 KISIKQQVIIWWAGLMRGAVSMALA 145
+ ++++++ I W GL RGAV + LA
Sbjct: 327 RFNLREKLFISWVGL-RGAVPIVLA 350
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism].
Length = 397
Score = 39.1 bits (92), Expect = 0.001
Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 42/201 (20%)
Query: 1 MVLMAYLSYMLAELFYLSGILTVFFCGIVMS--HYTWHNVTESSRVTTKHTFATLSFVAE 58
++ AYL AEL LS IL F G+++S Y H + E F
Sbjct: 231 VLGAAYL----AELLGLSMILGAFLAGLLLSESEYRKHELEEK----------IEPFGDG 276
Query: 59 IFI---FLYVGMDALDIEKWRFVKGSPGTSVAASAMLMGLIMAGRAAFVFPLSFLTNLAK 115
+FI F+ VGM +LD+ G ++ +L+ L + G+ + + L +K
Sbjct: 277 LFIPLFFISVGM-SLDL-------GVLLENLLLILLLVALAILGKILGAYLAARLLGFSK 328
Query: 116 KSPTEKISIKQQVIIWWAGLMRGAVSMALAYNQFTRSGHTQLRENAIMITSTITVVLFST 175
+ + I G + LA + ++T+ + + + +T
Sbjct: 329 RL---------ALGIGLLLRQGGEFAFVLA------GIALGSAISEALLTAVVILSMITT 373
Query: 176 VVFGLMTKPLIRLLLPHPKHT 196
+ L+T L++ LL +
Sbjct: 374 PILPLLTPILLKRLLKKSEDE 394
>gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase. This
model represents 5-aminolevulinic acid synthase, an
enzyme for one of two routes to the heme precursor
5-aminolevulinate. The protein is a pyridoxal
phosphate-dependent enzyme related to
2-amino-3-ketobutyrate CoA tranferase and
8-amino-7-oxononanoate synthase. This enzyme appears
restricted to the alpha Proteobacteria and mitochondrial
derivatives [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 402
Score = 30.5 bits (69), Expect = 0.95
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 190 LPHPKHTTNHILSDPSTPKSLSQPLLEEG----QQDSYADLGGPTVPRPGSLRALLT-TP 244
+P+P H I+ D + K +S LL + Q +Y PTVPR G+ R +T TP
Sbjct: 323 IPNPSHIVPVIIGDAALCKKVSDLLLNKHGIYVQPINY-----PTVPR-GTERLRITPTP 376
Query: 245 THT 247
HT
Sbjct: 377 AHT 379
>gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional.
Length = 410
Score = 30.6 bits (69), Expect = 0.96
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 190 LPHPKHTTNHILSDPSTPKSLSQPLLEEG----QQDSYADLGGPTVPRPGSLRALLT-TP 244
+P P H ++ DP+ K++S L+ E Q +Y PTVPR G+ R +T TP
Sbjct: 324 MPSPSHIVPVMVGDPTLCKAISDRLMSEHGIYIQPINY-----PTVPR-GTERLRITPTP 377
Query: 245 THTVHY 250
H
Sbjct: 378 LHDDED 383
>gnl|CDD|171522 PRK12468, flhB, flagellar biosynthesis protein FlhB; Reviewed.
Length = 386
Score = 29.2 bits (65), Expect = 2.3
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 6 YLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFVAEIFIF 62
+ S LAEL L IL G V + WHN + R+ A L + IF
Sbjct: 138 FSSQALAEL--LKAILKATLVGWVTGLFLWHNWPDMMRLIAAPPVAALGDALHLIIF 192
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases,
insulinase-like [Posttranslational modification, protein
turnover, chaperones].
Length = 937
Score = 29.3 bits (66), Expect = 2.5
Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 45/128 (35%)
Query: 182 TKPLIRLLLPHPKHTTNH------------ILSDPSTPKSLSQPLLEEGQQDSYAD---- 225
P++ + + ++SDP KS + ++ G D +
Sbjct: 7 WNPIVLTIHKPALDDRKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGL 66
Query: 226 ---------LGGPTVPRPGSLRALL----------TTPTHTVHYY----------WRKFD 256
+G P G L T T Y+ +F
Sbjct: 67 AHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNASTAGERTAFYFEVENDALEGALDRFA 126
Query: 257 DAFMRPVF 264
D F+ P+F
Sbjct: 127 DFFIEPLF 134
>gnl|CDD|223866 COG0795, COG0795, Predicted permeases [General function prediction
only].
Length = 364
Score = 29.2 bits (66), Expect = 2.8
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 46 TKHTFATLSFVAEIFIFLYVGMDALDIEKWRFVKGSPGTSVAASAMLMGLIMAGRAAFVF 105
+ T + + + + + +D L++ + V G +L+ L + V
Sbjct: 9 LREYLKTFLAILLVLLAILLIIDLLELLNGKAVDG--RYPALDVLLLLLLSLPTLLPLVL 66
Query: 106 PLSFL 110
PL+ L
Sbjct: 67 PLALL 71
>gnl|CDD|217769 pfam03867, FTZ, Fushi tarazu (FTZ), N-terminal region. This region
contains the important motif (LXXLL) necessary for the
interaction of FTZ with the nuclear receptor FTZ-F1. FTZ
is thought to represents a category of LXXLL
motif-dependent co-activators for nuclear receptors.
Length = 264
Score = 28.6 bits (63), Expect = 4.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 220 QDSYADLGGPTVPRPGSLRALLTTPTHTVHY 250
+DS AD+ RP +LRALLT P + Y
Sbjct: 107 EDSAADIIAAVEERPSTLRALLTNPVKKLKY 137
>gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional.
Length = 406
Score = 28.5 bits (64), Expect = 4.3
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 190 LPHPKHTTNHILSDPSTPKSLSQPLLEEG----QQDSYADLGGPTVPRPGSLRALLT-TP 244
LP+P H ++ DP K +S LL+ Q +Y PTVPR G+ R +T +P
Sbjct: 323 LPNPSHIVPVMVGDPVLCKQISDELLDRYGIYVQPINY-----PTVPR-GTERLRITPSP 376
Query: 245 THT 247
HT
Sbjct: 377 LHT 379
>gnl|CDD|221310 pfam11913, DUF3431, Protein of unknown function (DUF3431). This
family of proteins are functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 291 to 390 amino acids in
length. This protein has a conserved NLRC sequence
motif.
Length = 220
Score = 28.0 bits (63), Expect = 5.2
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 4 MAYLSYMLAELFYLSGILTVFFCGIVMSH-YTWHN 37
M YL+Y++ +L TVF + SH + WHN
Sbjct: 49 MVYLTYIIDHYDHLPDT-TVF----IHSHRFAWHN 78
>gnl|CDD|218267 pfam04791, LMBR1, LMBR1-like membrane protein. Members of this
family are integral membrane proteins that are around
500 residues in length. LMBR1 is not involved in
preaxial polydactyly, as originally thought. Vertebrate
members of this family may play a role in limb
development. A member of this family has been shown to
be a lipocalin membrane receptor.
Length = 419
Score = 28.2 bits (63), Expect = 5.7
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 172 LFSTVVFGLMTKPLIRLLLPHPKHTTN 198
L + G + P +R P P TT
Sbjct: 324 LMYSSYVGFYSLPFLRYYRPKPHDTTM 350
>gnl|CDD|239562 cd03480, Rieske_RO_Alpha_PaO, Rieske non-heme iron oxygenase (RO)
family, Pheophorbide a oxygenase (PaO) subfamily,
N-terminal Rieske domain of the oxygenase alpha subunit;
composed of the oxygenase alpha subunits of a small
subfamily of enzymes found in plants as well as oxygenic
cyanobacterial photosynthesizers including LLS1 (lethal
leaf spot 1, also known as PaO) and ACD1 (accelerated
cell death 1). ROs comprise a large class of aromatic
ring-hydroxylating dioxygenases that enable
microorganisms to tolerate and utilize aromatic
compounds for growth. The oxygenase alpha subunit
contains an N-terminal Rieske domain with an [2Fe-2S]
cluster and a C-terminal catalytic domain with a
mononuclear Fe(II) binding site. The Rieske [2Fe-2S]
cluster accepts electrons from a reductase or ferredoxin
component and transfers them to the mononuclear iron for
catalysis. PaO expression increases upon physical
wounding of plant leaves and is thought to catalyze a
key step in chlorophyll degradation. The
Arabidopsis-accelerated cell death gene ACD1 is involved
in oxygenation of PaO.
Length = 138
Score = 26.5 bits (59), Expect = 9.0
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 105 FPLSFLTNLAKKSPTEKISIKQQVIIWW 132
+P++++ +L PT + + ++IWW
Sbjct: 19 YPVAYVEDLDPSRPTPFTLLGRDLVIWW 46
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.417
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,845,683
Number of extensions: 1429354
Number of successful extensions: 1973
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1950
Number of HSP's successfully gapped: 59
Length of query: 286
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 190
Effective length of database: 6,679,618
Effective search space: 1269127420
Effective search space used: 1269127420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.0 bits)