RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023173
(286 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 2e-06
Identities = 53/277 (19%), Positives = 79/277 (28%), Gaps = 96/277 (34%)
Query: 49 TFATLSFVAEIFIFLYVGMDALDIEKW-RFVKGSPGTSVAASAMLMGLIMAGRAAFVFPL 107
T + L ++ L+I +W +P S PL
Sbjct: 194 TLSELIRTTLDAEKVFT--QGLNILEWLENPSNTPDKDYLLSI-----------PISCPL 240
Query: 108 SFLTNLA---------KKSPTEKISIKQQVIIWWAGLMRG-AVSMALAYNQFTRSGHTQL 157
+ LA +P E S + GL+ A++ ++ F S +
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 158 RENAIMITSTITVVLFSTVVFGLMTKPLIRLLLPHPKHTTNHILSD--------PSTP-- 207
VLF V P LP P IL D PS P
Sbjct: 301 T------------VLFFIGVRCYEAYP--NTSLP-PS-----ILEDSLENNEGVPS-PML 339
Query: 208 --KSLSQPLLE-----------EGQQDSYADLGGPT--V---PRPGSLRALLTT------ 243
+L+Q ++ G+Q + + G V P P SL L T
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGP-PQSLYGLNLTLRKAKA 398
Query: 244 PTHT----VHYYWRKFDDAFMRPVFGGRGF----APF 272
P+ + + RK F R F +PF
Sbjct: 399 PSGLDQSRIPFSERK-------LKFSNR-FLPVASPF 427
Score = 31.2 bits (70), Expect = 0.46
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 23/80 (28%)
Query: 195 HT-TNHILSDPSTPKSLSQPLLEEGQQDSY----ADLGGPTVPRPGSLRALLT-TPTHTV 248
H +L + T ++ L++ +Y P + S AL
Sbjct: 102 HALAAKLLQENDTTLVKTKELIK-----NYITARIMAKRPFDKKSNS--ALFRAVGEGNA 154
Query: 249 HYYWRKFDDAFMRPVFGGRG 268
+FGG+G
Sbjct: 155 QLV----------AIFGGQG 164
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle,
NHE1, Na+/H+ transporter, metal transport; NMR
{Synthetic}
Length = 33
Score = 38.5 bits (89), Expect = 6e-05
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 5 AYLSYMLAELFYLSGILTVFFCGIVM 30
+Y++Y+ AELF+LSGI+ + G+VM
Sbjct: 3 SYMAYLSAELFHLSGIMALIASGVVM 28
>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme
function initiative, lyase; 1.45A {Caulobacter
crescentus} PDB: 4fi4_A 3thu_A
Length = 425
Score = 28.7 bits (65), Expect = 2.6
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 48 HTFATLSFVAEIFIFLYVGMDALDIEK-WR------FVKGSPGTSVAASA 90
+ +SF+ + + +G DA IE W+ + +G P A +A
Sbjct: 62 RELSVVSFLQDHMVPSLIGRDAHQIEDIWQFFYRGSYWRGGPVAMTALAA 111
>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function
initiative, isomerase; 2.00A {Pectobacterium carotovorum
subsp}
Length = 426
Score = 28.4 bits (64), Expect = 3.0
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 48 HTFATLSFVAEIFIFLYVGMDALDIEK-WR------FVKGSPGTSVAASA 90
S++ + +G DA IE W+ + + P T A SA
Sbjct: 61 RELPVASYLNDHVCPQLIGRDAHQIEDIWQYFYKGAYWRRGPVTMSAISA 110
>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function
initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio
japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A*
3ow1_A 3pk7_A* 3rgt_A* 3bsm_A
Length = 424
Score = 28.0 bits (63), Expect = 3.5
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 48 HTFATLSFVAEIFIFLYVGMDALDIEK-WR------FVKGSPGTSVAASA 90
+ +S++ + I + +G D IE W+ + + P A +A
Sbjct: 61 REKSVVSYLEDYLIPVLIGRDPQQIEDIWQFFYRGAYWRRGPVGMTALAA 110
>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold,
mannonate dehydratase, D-mannonate, lyase; HET: CS2;
1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A
2qjn_A* 2qjm_A*
Length = 418
Score = 28.0 bits (63), Expect = 3.5
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 48 HTFATLSFVAEIFIFLYVGMDALDIEK-WR------FVKGSPGTSVAASA 90
+ ++++ E +GMD IE W+ + + P T A +A
Sbjct: 55 RELSVVAYLQEHVAPCLIGMDPRRIEDIWQYVYRGAYWRRGPVTMRAIAA 104
>3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW
YORK structura genomics research consortium, TIM barrel;
HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A
3t9p_A 3t8q_A
Length = 388
Score = 28.0 bits (63), Expect = 3.6
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 7/54 (12%)
Query: 44 VTTKHTFATLSFVAEIFIFLYVGMDALDIEK-WR------FVKGSPGTSVAASA 90
V+T H T + + +G D D++ A +
Sbjct: 53 VSTYHADITCTVLHRQVAPWMLGQDITDLDDLLDIVTEREHKFPGSYLRRAMAG 106
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein;
enolase, dehydratase, enzyme function initiative, EFI,
lyase; 1.80A {Enterobacter SP}
Length = 422
Score = 28.0 bits (63), Expect = 4.4
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 48 HTFATLSFVAEIFIFLYVGMDALDIEK-WR------FVKGSPGTSVAASA 90
A + V E L +G DA +IE W+ + + P + A S
Sbjct: 66 RPLAVKTLVDEYLQPLMIGRDANNIEDLWQMMNVNAYWRNGPLMNNAISG 115
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 4.7
Identities = 40/311 (12%), Positives = 86/311 (27%), Gaps = 93/311 (29%)
Query: 37 NVTESSRVTTKHTFATLSF--VAEIFIFLYVGMDALDIEKWRFVKGSPGTSVAASAMLMG 94
+ ++ ++ H TL+ V + + Y+ D+ + + +P +
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPR-EVLTTNP--------RRLS 331
Query: 95 LIMAGRAAFV--FPLSF----------LTNLAKKS-----PTE---------------KI 122
+I A + ++ LT + + S P E I
Sbjct: 332 II----AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 123 SIKQQVIIWWAGLMRGAVSMALAYNQFTRSGHTQLRENAIMITSTITVVLFSTVVFGLMT 182
+IW+ + + M + N+ + + + T +I + V
Sbjct: 388 PTILLSLIWFD--VIKSDVMVVV-NKLHKYS--LVEKQPKESTISIPSIYLELKVKLENE 442
Query: 183 KPLIRLLLPHPKHTTNHILSDPSTPKS-----------LSQPLLEEGQQDS-----YADL 226
L R ++ H D P L +E ++ + + D
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN--IEHPERMTLFRMVFLDF 500
Query: 227 G---------GPTVPRPGSLRALLTTPTHTVHYYWRKF----DDAFMRPVFGGRGFAPFV 273
GS+ L + +Y + + D + R V F+
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTL----QQLKFY-KPYICDNDPKYERLV---NAILDFL 552
Query: 274 PGSPTERSVRG 284
P E +
Sbjct: 553 P-KIEENLICS 562
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A
{Escherichia coli} PDB: 2wym_A*
Length = 360
Score = 27.6 bits (61), Expect = 4.7
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 207 PKSLSQPLLEEGQQDSYADLGGPTVPRPGSLRALLTTPTHTVHYYWRKFDDAFMRP 262
P+ + + + Y P + + G + ++Y R FDD F
Sbjct: 292 PQEIRVLWEMKKDRLKYGFK--PFIWQVGGKFTWPLDKDNFEYHYPRGFDDCFTIE 345
>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate
dehydratase related protein, enzyme funct intitiative,
lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis}
PDB: 3tw9_A 3twa_A 3twb_A*
Length = 440
Score = 27.7 bits (62), Expect = 5.4
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 48 HTFATLSFVAEIFIFLYVGMDALDIEK-WRFVKGS---PGTSVAASAM 91
+A S + E +G D IE W+ S V +A+
Sbjct: 67 RIYAVQSAIDEYLAPFLIGKDPARIEDIWQSAAVSGYWRNGPVMNNAL 114
>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural
genomics, protein structure initiative, nysgxrc; 1.80A
{Agrobacterium tumefaciens str} PDB: 4dn1_A
Length = 388
Score = 27.3 bits (61), Expect = 5.9
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 8/51 (15%)
Query: 48 HTFATLSFVAEIFIFLYVGMDALDIEK-WR------FVKGSPGTSVAASAM 91
A + + ++ +G DA D + V+G G A+
Sbjct: 74 APGAVAALINDLLAGFVIGRDASDPSAVYDDLYDMMRVRGYTG-GFYVDAL 123
>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein;
enolase, mandelate racemase subgroup, enzyme function
initia EFI; 1.25A {Agrobacterium tumefaciens} PDB:
4dx3_A 2pod_A
Length = 400
Score = 27.2 bits (61), Expect = 6.7
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 7/47 (14%)
Query: 51 ATLSFVAEIFIFLYVGMDALDIEK-WR------FVKGSPGTSVAASA 90
++V E +G D L I+ + + S SA
Sbjct: 40 TVETYVHEYIAPRVIGRDPLQIDLLAQDLVGYLGFRSSGAEVRGNSA 86
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold,
acid sugar dehydratase, D-araninonate, isomera; HET:
EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB:
3r25_A 3dfh_A 3s47_A 3gy1_A
Length = 401
Score = 27.2 bits (61), Expect = 7.8
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 48 HTFATLSFVAEIFIFLYVGMDALDIEK-WR------FVKGSPGTSVAASA 90
A + V E + +G +A +IE W+ + + P + A S
Sbjct: 45 RPLAVKTMVDEYLKPILIGKNANNIEDLWQMMMVNAYWRNGPVINNAISG 94
>3som_A Methylmalonic aciduria and homocystinuria type C; structural
genomics, structural genomics consortium, SGC, CB
organic aciduria; HET: MSE B12 FLC 5AD; 2.40A {Homo
sapiens}
Length = 286
Score = 26.7 bits (58), Expect = 9.0
Identities = 27/149 (18%), Positives = 41/149 (27%), Gaps = 34/149 (22%)
Query: 94 GLIMAGRAAFVFPLSFLTNLAKKSPTEKISIKQQVII--------WWAGLMRGAVSMALA 145
G A R + P + +L + P + + + I W R AV+
Sbjct: 159 GGWFAIRGVVLLPGIEVPDLPPRKPHDCVPTRADRIALLEGFNFHWRDWTYRDAVTPQER 218
Query: 146 YNQFTRSGHTQLRENAIMITSTITVVLFSTVVFGLMTKPLIRLLLPHPK-HTTNHILS-- 202
Y S FST L+ L P K + + L
Sbjct: 219 Y-------------------SEEQKAYFSTPP--AQRLALLGLAQPSEKPSSPSPDLPFT 257
Query: 203 --DPSTPKSLSQPLLEEGQQDSYADLGGP 229
P P + S+ + S GP
Sbjct: 258 TPAPKKPGNPSRARSWLSPRVSPPASPGP 286
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.417
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,389,082
Number of extensions: 257506
Number of successful extensions: 595
Number of sequences better than 10.0: 1
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 34
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.7 bits)