RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 023173
         (286 letters)



>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB
           {Enterococcus faecalis [TaxId: 1351]}
          Length = 167

 Score = 28.4 bits (63), Expect = 0.59
 Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 13/88 (14%)

Query: 174 STVVFGLMTKPLIRLLLPHPKHTTNHILSDPSTPKSLSQPLLEEGQQDSYADLGGPTVPR 233
           ST V  L  KP+I  L+         I+ +      L       G    Y  +G   +  
Sbjct: 36  STSVPNLAAKPIIDFLV---------IVEEIEKVDLLQWEFERIG----YEYMGEFGLSG 82

Query: 234 PGSLRALLTTPTHTVHYYWRKFDDAFMR 261
              LR      TH VH Y        +R
Sbjct: 83  RRYLRKGPIKRTHHVHIYQFDNTQEILR 110


>d1ha4a_ b.11.1.1 (A:) gamma-Crystallin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 87

 Score = 25.8 bits (57), Expect = 1.8
 Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)

Query: 212 QPLLEEGQQDSYADLGGPTVPRPGSLRALL 241
           Q LL++ +     D G  + P   S R ++
Sbjct: 58  QYLLDKKEYRKPIDWGAAS-PAVQSFRRIV 86


>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida
           [TaxId: 303]}
          Length = 554

 Score = 26.7 bits (59), Expect = 4.0
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 223 YADLGGPTVPRPGSLRALLTTPTHTVHYYWRKFDDAFMRPVFGGRGFAPF 272
           +   G PT     ++R +         + +  F  A++RP+F  RG  PF
Sbjct: 310 FQKQGVPTFDYGNNIRQMAKEEGVADAFDFPGFVPAYIRPLF-CRGVGPF 358


>d2axtc1 f.55.1.1 (C:27-473) Photosystem II CP43 protein PsbC
           {Thermosynechococcus elongatus [TaxId: 146786]}
          Length = 447

 Score = 26.3 bits (58), Expect = 5.4
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 9/35 (25%)

Query: 5   AYLSYMLAELFYLSGILTVFFCGIVMSHYTWHNVT 39
           AYLSY L           +   G + + + W N T
Sbjct: 244 AYLSYSLG---------ALSMMGFIATCFVWFNNT 269


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,054,526
Number of extensions: 46768
Number of successful extensions: 142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 11
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.3 bits)