BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023174
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/263 (75%), Positives = 217/263 (82%), Gaps = 1/263 (0%)
Query: 24 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 9 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 68
Query: 84 CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL YM+ QCL
Sbjct: 69 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 128
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM G Y + GGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 129 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 187
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWV 263
SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD WIFWV
Sbjct: 188 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 247
Query: 264 GPFVGAGLAALYHQVVIRAIPFK 286
GPF+GA +AA YHQ V+RA K
Sbjct: 248 GPFIGAAVAAAYHQYVLRAAAIK 270
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 400 bits (1029), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/263 (75%), Positives = 217/263 (82%), Gaps = 1/263 (0%)
Query: 24 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 9 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 68
Query: 84 CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL YM+ QCL
Sbjct: 69 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 128
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM G Y + GGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 129 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 187
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWV 263
SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD WIFWV
Sbjct: 188 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 247
Query: 264 GPFVGAGLAALYHQVVIRAIPFK 286
GPF+GA +AA YHQ V+RA K
Sbjct: 248 GPFIGAAVAAAYHQYVLRAAAIK 270
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 400 bits (1029), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/263 (75%), Positives = 217/263 (82%), Gaps = 1/263 (0%)
Query: 24 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 32 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 91
Query: 84 CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+SL RAL YM+ QCL
Sbjct: 92 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCL 151
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM G Y + GGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 152 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 210
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWV 263
SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD WIFWV
Sbjct: 211 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 270
Query: 264 GPFVGAGLAALYHQVVIRAIPFK 286
GPF+GA +AA YHQ V+RA K
Sbjct: 271 GPFIGAAVAAAYHQYVLRAAAIK 293
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 399 bits (1025), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/263 (74%), Positives = 216/263 (82%), Gaps = 1/263 (0%)
Query: 24 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 32 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 91
Query: 84 CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+ L RAL YM+ QCL
Sbjct: 92 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCL 151
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM G Y + GGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 152 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 210
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWV 263
SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD WIFWV
Sbjct: 211 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 270
Query: 264 GPFVGAGLAALYHQVVIRAIPFK 286
GPF+GA +AA YHQ V+RA K
Sbjct: 271 GPFIGAAVAAAYHQYVLRAAAIK 293
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 399 bits (1024), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/263 (74%), Positives = 216/263 (82%), Gaps = 1/263 (0%)
Query: 24 AAQTQDGKDYVEPPPAPLFEPGELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTK 83
A Q GKDYV+PPPAP F+ GELK WSF+RA IAEFIAT LFLYI+V TV+G K
Sbjct: 28 AQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVV 87
Query: 84 CSTVGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCL 143
C +VG+ GIAWAFGGMIFVLVYCTAGISGGHINPAVT GLFLARK+ L RAL YM+ QCL
Sbjct: 88 CGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCL 147
Query: 144 GAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKR 203
GAICG G+VK FM G Y + GGAN VA GY KG LGAEIIGTFVLVYTVFSATD KR
Sbjct: 148 GAICGVGLVKAFM-KGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKR 206
Query: 204 SARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWV 263
SARDSHVPILAPLPIGFAVF+VHLATIPITGTGINPARS GAA+I+N ++ WDD WIFWV
Sbjct: 207 SARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWV 266
Query: 264 GPFVGAGLAALYHQVVIRAIPFK 286
GPF+GA +AA YHQ V+RA K
Sbjct: 267 GPFIGAAVAAAYHQYVLRAAAIK 289
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 141/239 (58%), Gaps = 13/239 (5%)
Query: 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGV---VKSNTKCSTVGIQ-GIAWAFGGMIF 101
E K F+RA +AEF+A LF++IS+ + +G +KSN V ++ AFG I
Sbjct: 4 EFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIA 63
Query: 102 VLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQY 161
L ISG H+NPAVTLGL L+ ++S+ RA+ Y++ QC+GAI ++ G +
Sbjct: 64 TLAQSVGHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD 123
Query: 162 GRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFA 221
L G N +A G G GLG EIIGT LV V + TD +R RD + PL IGF+
Sbjct: 124 NSL--GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSGPLAIGFS 177
Query: 222 VFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 280
V L HL I TG GINPARS G+++I + + DHWIFWVGPF+GA LA L + ++
Sbjct: 178 VALGHLLAIDYTGCGINPARSFGSSVITHN---FQDHWIFWVGPFIGAALAVLIYDFIL 233
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 141/238 (59%), Gaps = 13/238 (5%)
Query: 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGV---VKSNTKCSTVGIQGIAWAFGGMIFV 102
E K F+RA +AEF+AT LF++IS+ + +G V +N ++ ++ AFG I
Sbjct: 4 EFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVK-VSLAFGLSIAT 62
Query: 103 LVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYG 162
L ISG H+NPAVTLGL L+ ++S+ RAL Y++ QC+GAI ++ G +
Sbjct: 63 LAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGN 122
Query: 163 RLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAV 222
L G N +A G G GLG EIIGT LV V + TD +R RD + APL IG +V
Sbjct: 123 SL--GRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRR--RD--LGGSAPLAIGLSV 176
Query: 223 FLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 280
L HL I TG GINPARS G+A+I + + +HWIFWVGPF+G LA L + ++
Sbjct: 177 ALGHLLAIDYTGCGINPARSFGSAVITHN---FSNHWIFWVGPFIGGALAVLIYDFIL 231
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 135/237 (56%), Gaps = 11/237 (4%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI 110
+F++A AEF+A +F+ +SV + + S V + I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV 170
SGGHINPAVT+ + RK+S+ +++FY+ QCLGAI GAG++ G L G
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGL--GVTT 127
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATI 230
V T G GL E+I TF LV+T+F++ D+KR+ V L IGF+V + HL I
Sbjct: 128 VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSV----ALAIGFSVAIGHLFAI 183
Query: 231 PITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLA-ALYHQVVIRAIPFK 286
TG +NPARS G A+I W++HWI+WVGP +GA LA ALY V + K
Sbjct: 184 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELK 237
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 134/237 (56%), Gaps = 11/237 (4%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI 110
+F++A AEF+A +F+ +SV + + S V + I+ FG I +V C I
Sbjct: 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 108
Query: 111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV 170
SGGHINPAVT+ + RK+S+ +++FY+ QCLGAI GAG++ G L G
Sbjct: 109 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGL--GVTT 166
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATI 230
V T G GL E+I TF LV+T+F++ D KR+ V L IGF+V + HL I
Sbjct: 167 VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAIGHLFAI 222
Query: 231 PITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLA-ALYHQVVIRAIPFK 286
TG +NPARS G A+I W++HWI+WVGP +GA LA ALY V + K
Sbjct: 223 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELK 276
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 151 bits (381), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/237 (40%), Positives = 134/237 (56%), Gaps = 11/237 (4%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI 110
+F++A AEF+A +F+ +SV + + S V + I+ FG I +V C I
Sbjct: 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHI 69
Query: 111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV 170
SGGHINPAVT+ + RK+S+ +++FY+ QCLGAI GAG++ G L G
Sbjct: 70 SGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGL--GVTT 127
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATI 230
V T G GL E+I TF LV+T+F++ D KR+ V L IGF+V + HL I
Sbjct: 128 VHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSV----ALAIGFSVAIGHLFAI 183
Query: 231 PITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLA-ALYHQVVIRAIPFK 286
TG +NPARS G A+I W++HWI+WVGP +GA LA ALY V + K
Sbjct: 184 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELK 237
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/229 (40%), Positives = 133/229 (58%), Gaps = 11/229 (4%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI 110
+F++A AEF+A +F+ +S+ + + K V + I+ FG I +V C I
Sbjct: 2 AFWKAVTAEFLAMLIFVLLSLGSTINW-GGTEKPLPVDMVLISLCFGLSIATMVQCFGHI 60
Query: 111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV 170
SGGHINPAVT+ + RK+S+ +++FY+ QCLGAI GAG++ G L G +
Sbjct: 61 SGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGL--GVTM 118
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATI 230
V T G GL E+I TF LV+T+F++ D+KR+ + L IGF+V + HL I
Sbjct: 119 VHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAI 174
Query: 231 PITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLA-ALYHQV 278
TG +NPARS G A+I W++HWI+WVGP +GA LA LY V
Sbjct: 175 NYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 220
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 134/232 (57%), Gaps = 15/232 (6%)
Query: 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVY 105
E+ S +F +A AEF+AT +F++ + + + K + T I IA AFG I L
Sbjct: 5 EVCSVAFLKAVFAEFLATLIFVFFGLGSAL---KWPSALPT--ILQIALAFGLAIGTLAQ 59
Query: 106 CTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 165
+SGGHINPA+TL L + ++SL RA FY+ Q +GAI GAG++ G A R
Sbjct: 60 ALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGV--APLNARGN 117
Query: 166 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAP-LPIGFAVFL 224
N + + T+G + E+I TF L +F++TD++R++ P+ +P L IG +V L
Sbjct: 118 LAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSIGLSVTL 172
Query: 225 VHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYH 276
HL I TG +NPARS G A++ N R HW+FWVGP VGA LAA+ +
Sbjct: 173 GHLVGIYFTGCSMNPARSFGPAVVMN--RFSPAHWVFWVGPIVGAVLAAILY 222
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 123/235 (52%), Gaps = 14/235 (5%)
Query: 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVY 105
EL+S SF+RA AEF A+ +++ + + + + +A AFG + LV
Sbjct: 3 ELRSASFWRAICAEFFASLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQ 57
Query: 106 CTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 165
ISG H+NPAVT + ++SL RA+ YMV Q LGA+ GA V+ G LA
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLA 117
Query: 166 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLV 225
N + G + G EI T V +F+ D +R+ R V L +GF++ L
Sbjct: 118 --LNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 171
Query: 226 HLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 280
HL + TG G+NPARS AI+ R + +HW++WVGP +GAGL +L + ++
Sbjct: 172 HLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 123/235 (52%), Gaps = 14/235 (5%)
Query: 46 ELKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVY 105
EL+S SF+RA AEF AT +++ + + + + +A AFG + LV
Sbjct: 3 ELRSASFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQ 57
Query: 106 CTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLA 165
ISG H+NPAVT + ++SL RA+ Y+V Q LGA+ GA V+ G LA
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA 117
Query: 166 GGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLV 225
N + G + G EI T V +F+ D +R+ R V L +GF++ L
Sbjct: 118 --LNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLG 171
Query: 226 HLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 280
HL + TG G+NPARS AI+ R + +HW++WVGP +GAGL +L + ++
Sbjct: 172 HLFGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 223
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 121/233 (51%), Gaps = 14/233 (6%)
Query: 48 KSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCT 107
+S SF+RA AEF AT +++ + + + + +A AFG + LV
Sbjct: 1 RSASFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQAV 55
Query: 108 AGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGG 167
ISG H+NPAVT + ++SL RA+ Y+V Q LGA+ GA V+ G LA
Sbjct: 56 GHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA-- 113
Query: 168 ANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHL 227
N + G + G EI T V +F+ D +R+ R V L +GF++ L HL
Sbjct: 114 LNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHL 169
Query: 228 ATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 280
+ TG G+NPARS AI+ R + +HW++WVGP +GAGL +L + ++
Sbjct: 170 FGMYYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 219
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 121 bits (303), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 14/230 (6%)
Query: 51 SFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGI 110
SF+RA AEF AT +++ + + + + +A AFG + LV I
Sbjct: 2 SFWRAIFAEFFATLFYVFFGLGASL-----RWAPGPLHVLQVALAFGLALATLVQAVGHI 56
Query: 111 SGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANV 170
SG H+NPAVT + ++SL RA+ Y+V Q LGA+ GA V+ G LA N
Sbjct: 57 SGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA--LNT 114
Query: 171 VAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATI 230
+ G + G EI T V +F+ D +R+ R V L +GF++ L HL +
Sbjct: 115 LHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGM 170
Query: 231 PITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 280
TG G+NPARS AI+ R + +HW++WVGP +GAGL +L + ++
Sbjct: 171 YYTGAGMNPARSFAPAIL---TRNFTNHWVYWVGPVIGAGLGSLLYDFLL 217
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 120/264 (45%), Gaps = 31/264 (11%)
Query: 26 QTQDGKDYVEPPPAPL----FEPGELKSWSF--------YRAGIAEFIATFLFLYISVLT 73
Q DG+ ++P AP ++P + W F + A EF+ TFLFL+ S
Sbjct: 7 QAADGQAEIKPEDAPYITNAYKPAYAR-WGFGSDSVRNHFIAMSGEFVGTFLFLW-SAFV 64
Query: 74 VMGVVKSNTKCSTVGIQG-----IAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARK 128
+ + + G I++ FG + V V+ T +SGG++NPAVTL L LAR
Sbjct: 65 IAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLARA 124
Query: 129 LSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGT 188
+ R + Q I G A G +A AN + G ++ GL E GT
Sbjct: 125 IPPFRGILMAFTQ----IVAGMAAAGAASAMTPGEIA-FANALGGGASRTRGLFLEAFGT 179
Query: 189 FVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII 248
+L TV K A AP IG A+ + HL I TG G+NPARS G A+
Sbjct: 180 AILCLTVLMLAVEKHRAT-----WFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVA 234
Query: 249 YNKDRGWDDHWIFWVGPFVGAGLA 272
+ HWI+W+GP +GA LA
Sbjct: 235 ARSFPNY--HWIYWLGPILGAFLA 256
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 91/181 (50%), Gaps = 10/181 (5%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 34 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 93
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRS 204
A ++ + +G+ G A + ++GY + G ++ V V V SA
Sbjct: 94 VAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 151
Query: 205 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW--DDHWIF 261
A D P AP+ IG A+ L+HL +IP+T T +NPARS AI GW + W F
Sbjct: 152 ATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIF---QGGWALEQLWFF 208
Query: 262 W 262
W
Sbjct: 209 W 209
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 90/181 (49%), Gaps = 10/181 (5%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRS 204
A ++ + +G+ G A + ++GY + G ++ V V V SA
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 205 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW--DDHWIF 261
A D P AP+ IG A L+HL +IP+T T +NPARS AI GW + W F
Sbjct: 155 ATDKFAPAGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIF---QGGWALEQLWFF 211
Query: 262 W 262
W
Sbjct: 212 W 212
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 110/235 (46%), Gaps = 30/235 (12%)
Query: 47 LKSWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYC 106
+S+ R +AEF TF ++ + V + +G G+A AFG + + Y
Sbjct: 24 FQSYVMGRKLLAEFFGTFWLVFGGCGSA--VFAAAFPELGIGFTGVALAFGLTVLTMAYA 81
Query: 107 TAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLG-----------AICGAGVVKGF 155
GISGGH NPAV++GL +A + + + Y++ Q G A AG+ G
Sbjct: 82 VGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGG 141
Query: 156 MGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAP 215
+ YG + G GY+ L EII T + + +T + A AP
Sbjct: 142 FASNGYGEHSPG------GYSLVSALLIEIILTAFFLIVILGSTHGRVPAG------FAP 189
Query: 216 LPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW--DDHWIFWVGPFVG 268
+ IG A+ L+HL +IP+T T +NPARS G A+ GW W+FW+ P VG
Sbjct: 190 IAIGLALTLIHLISIPVTNTSVNPARSTGQALFVG---GWALQQLWLFWLAPIVG 241
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 90/181 (49%), Gaps = 10/181 (5%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRS 204
A ++ + +G+ G A + ++GY + G ++ V V V SA
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 205 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW--DDHWIF 261
A D P AP+ IG A+ L+HL +IP+T +NPARS AI GW + W F
Sbjct: 155 ATDKFAPAGFAPIAIGLALTLIHLISIPVTNCSVNPARSTAVAIF---QGGWALEQLWFF 211
Query: 262 W 262
W
Sbjct: 212 W 212
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 90/181 (49%), Gaps = 10/181 (5%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRS 204
A ++ + +G+ G A + ++GY + G ++ V V V SA
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 205 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW--DDHWIF 261
A D P AP+ IG A+ L+HL +IP+T +NPARS AI GW + W F
Sbjct: 155 ATDKFAPAGFAPIAIGLALTLIHLISIPVTNCSVNPARSTAVAIF---QGGWALEQLWFF 211
Query: 262 W 262
W
Sbjct: 212 W 212
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 10/181 (5%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A A+G + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRS 204
A ++ + +G+ G A + ++GY + G ++ V V V SA
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 205 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW--DDHWIF 261
A D P AP+ IG A+ L+HL +IP+T T +NPARS AI GW + W F
Sbjct: 155 ATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIF---QGGWALEQLWFF 211
Query: 262 W 262
W
Sbjct: 212 W 212
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 10/181 (5%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A AFG + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRS 204
A ++ + +G+ G A + ++GY + G ++ V V V SA
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 205 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW--DDHWIF 261
A D P AP+ IG A+ L+ L +IP+T +NPARS AI GW + W F
Sbjct: 155 ATDKFAPAGFAPIAIGLALTLIGLISIPVTNFSVNPARSTAVAIF---QGGWALEQLWFF 211
Query: 262 W 262
W
Sbjct: 212 W 212
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 112/244 (45%), Gaps = 22/244 (9%)
Query: 51 SFYRAGIAEFIATFLFLY-------ISVLTVMGVVKSN-------TKCSTVGIQGIAWAF 96
S + IAEFI TF+ ++ ++++ G N I AF
Sbjct: 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAF 62
Query: 97 GGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFM 156
G I +Y ISG HINPAVT+GL+ +K + Y++ Q LGA G+ +
Sbjct: 63 GFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCA 122
Query: 157 GAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPL 216
G G GA G + + AE++GTF+L+ T+ +R+ + A +
Sbjct: 123 GIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKG-----FAGI 177
Query: 217 PIGFAVFLVHLATIPITGTGINPARSLGAAI---IYNKDRGWDDHWIFWVGPFVGAGLAA 273
IG V + I+G+ +NPAR+ G + I+ W+ + I+ +GP VGA LAA
Sbjct: 178 IIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAA 237
Query: 274 LYHQ 277
L +Q
Sbjct: 238 LTYQ 241
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 89/181 (49%), Gaps = 10/181 (5%)
Query: 87 VGIQGIAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAI 146
+G G+A A+G + + + ISGGH NPAVT+GL+ + + Y++ Q +G I
Sbjct: 37 IGFAGVALAWGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGI 96
Query: 147 CGAGVVKGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSA--TDAKRS 204
A ++ + +G+ G A + ++GY + G ++ V V V SA
Sbjct: 97 VAAALLY-LIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALV-VELVLSAGFLLVIHG 154
Query: 205 ARDSHVPI-LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW--DDHWIF 261
A D P AP+ IG A+ L+ L +IP+T +NPARS AI GW + W F
Sbjct: 155 ATDKFAPAGFAPIAIGLALTLIGLISIPVTNFSVNPARSTAVAIF---QGGWALEQLWFF 211
Query: 262 W 262
W
Sbjct: 212 W 212
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 112/255 (43%), Gaps = 33/255 (12%)
Query: 57 IAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGISGGHIN 116
IAEF+ T L ++ V V + ++ G I+ FG + + +Y TAG+SG H+N
Sbjct: 12 IAEFLGTGLLIFFGVGCVAAL---KVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLN 68
Query: 117 PAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFM---------------GAGQY 161
PAVT+ L+L + + ++V Q GA C A +V G G+ +
Sbjct: 69 PAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVES 128
Query: 162 GRLAGGANVVAHGYTK-GDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGF 220
LAG + + + E++ T +L+ + + TD LAPL IG
Sbjct: 129 VDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAPLLIGL 185
Query: 221 AVFLVHLATIPITGTGINPARSLGAAII----------YNKDRGWDDHWIFWVGPFVGAG 270
+ ++ + P+TGT +NPAR G + + R + GP VGA
Sbjct: 186 LIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAI 245
Query: 271 LAAL-YHQVVIRAIP 284
+ A Y +++ R +P
Sbjct: 246 VGAFAYRKLIGRHLP 260
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 114/261 (43%), Gaps = 45/261 (17%)
Query: 57 IAEFIATFLFLY-----ISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFVLVYCTAGIS 111
IAEF+ T L ++ ++ L V G + S + G+A A +Y TAG+S
Sbjct: 12 IAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMA--------IYLTAGVS 63
Query: 112 GGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFM--------------- 156
G H+NPAVT+ L+L + + ++V Q GA C A +V G
Sbjct: 64 GAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVR 123
Query: 157 GAGQYGRLAGGANVVAHGYTK-GDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAP 215
G+ + LAG + + + E++ T +L+ + + TD LAP
Sbjct: 124 GSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGP---LAP 180
Query: 216 LPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGW--------DDHWIFWV---G 264
L IG + ++ + P+TG +NPAR G ++ GW D F V G
Sbjct: 181 LLIGLLIAVIGASMGPLTGFAMNPARDFGPK-VFAWLAGWGNVAFTGGRDIPYFLVPLFG 239
Query: 265 PFVGAGLAAL-YHQVVIRAIP 284
P VGA + A Y +++ R +P
Sbjct: 240 PIVGAIVGAFAYRKLIGRHLP 260
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 88/193 (45%), Gaps = 18/193 (9%)
Query: 92 IAWAFGGMIFVLVYCTAGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGV 151
I AF I ++Y ISG HINPAVT+ L+ + + Y+V Q +GA G+ +
Sbjct: 59 IGMAFALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLL 118
Query: 152 VKGFMG--AGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSH 209
+G A G L A GY G + E IGTF+L+ + +R+
Sbjct: 119 FLACVGPAAATVGGLGATAPFPGIGY--GQAILTEAIGTFLLMLVIMGVAVDERAP---- 172
Query: 210 VPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD-----RGWDDHWIFWVG 264
P A L IG V + ITG+ +NPAR+ G Y D W I+ +G
Sbjct: 173 -PGFAGLVIGLTVGGIITTIGNITGSSLNPARTFGP---YLGDSLMGINLWQYFPIYVIG 228
Query: 265 PFVGAGLAA-LYH 276
P VGA AA LY+
Sbjct: 229 PIVGAVAAAWLYN 241
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 101/247 (40%), Gaps = 27/247 (10%)
Query: 52 FYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQG----IAWAFGGMIFVLVYCT 107
FY++ + EFI FL ++ + G + T G+ G + +G +F + +
Sbjct: 5 FYKSYVREFIGEFLGTFVLMFLGEG---ATANFHTTGLSGDWYKLCLGWGLAVFFGILVS 61
Query: 108 AGISGGHINPAVTLGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMGAGQYGRLAGG 167
A +SG H+N AV++GL K L + Y Q LGA G V G Y
Sbjct: 62 AKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGL-----YHGFISN 116
Query: 168 ANVVAHGYTKGDGLGAEIIGTFV--LVYTVFSATDAKRSARDS-----HVPILAPLPIGF 220
+ + + + G F L+ T ++ H+ L+ + +G
Sbjct: 117 SKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVDENICGKFHILKLSSV-VGL 175
Query: 221 AVFLVHLATIPITGTGINPARSLG----AAIIYNKDRGWDDHWIFW---VGPFVGAGLAA 273
+ + + TG +NP+R LG + I Y KD D++ FW V P VG+ +
Sbjct: 176 IILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFC 235
Query: 274 LYHQVVI 280
++ VI
Sbjct: 236 QFYDKVI 242
>pdb|3T1G|A Chain A, Engineering Of Organophosphate Hydrolase By
Computational Design And Directed Evolution
Length = 353
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 40 PLFEPGELKSWSFYR---AGIAEFIATFLFLYISVLTVMGVV 78
PL +PG L W +Y AG E I + ++ + GVV
Sbjct: 56 PLSQPGTLAKWDYYMPVIAGCREAIKRIAYEFVEMKAKEGVV 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,867,749
Number of Sequences: 62578
Number of extensions: 379834
Number of successful extensions: 1062
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 937
Number of HSP's gapped (non-prelim): 43
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)