BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023175
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 97/215 (45%), Gaps = 33/215 (15%)
Query: 40 ESRKLVLQVKE-RLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQ 98
E + +LQ + LEK+Y R D+ +L FL+ RKF I S+ + +WR+
Sbjct: 38 EQEEALLQFRSILLEKNYKE-------RLDDSTLLRFLRARKFDINASVEMFVETERWRE 90
Query: 99 EFRVSELNEDSVRG----------IAESGKAYVHDFLDINERPVLIV-VASKHLPAVHDP 147
E+ + + ED +A+ Y H +D + RP+ + +L ++
Sbjct: 91 EYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHH-VDKDGRPLYFAELGGINLKKMYKI 149
Query: 148 VEDEKLCVFFIEK----ALSKLPPGK-------EQILGIIDLRGFGTENAD--LKFLTFL 194
++++ +++ A ++P E ++DL+G NA L ++ +
Sbjct: 150 TTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDV 209
Query: 195 FDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLL 229
D+ Y+P+R+G+ + +PF F +++ KP L
Sbjct: 210 ADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFL 244
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 97/215 (45%), Gaps = 33/215 (15%)
Query: 40 ESRKLVLQVKE-RLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQ 98
E + +LQ + LEK+Y R D+ +L FL+ RKF I S+ + +WR+
Sbjct: 38 EQEEALLQFRSILLEKNYKE-------RLDDSTLLRFLRARKFDINASVEMFVETERWRE 90
Query: 99 EFRVSELNEDSVRG----------IAESGKAYVHDFLDINERPVLIV-VASKHLPAVHDP 147
E+ + + ED +A+ Y H +D + RP+ + +L ++
Sbjct: 91 EYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHH-VDKDGRPLYFEELGGINLKKMYKI 149
Query: 148 VEDEKLCVFFIEK----ALSKLPPGK-------EQILGIIDLRGFGTENAD--LKFLTFL 194
++++ +++ A ++P E ++DL+G NA L ++ +
Sbjct: 150 TTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDV 209
Query: 195 FDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLL 229
D+ Y+P+R+G+ + +PF F +++ KP L
Sbjct: 210 ADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFL 244
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 73 LWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDSVRGIA--------ESGKAYVHDF 124
L +L+ K+ +++ + ++T + WR+EF +S L E+ I ESGK + +
Sbjct: 91 LRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGY 150
Query: 125 LDINERPVLIVVASK-HLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGF-- 181
+ + RP+L + + + H V+ VF +E+ + +P G++ + +ID + +
Sbjct: 151 -ENDARPILYLKPGRQNTKTSHRQVQH---LVFMLERVIDFMPAGQDSLALLIDFKDYPD 206
Query: 182 ------GTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLL 229
++ + + + ++P+RLG+ L P++ F +L P +
Sbjct: 207 VPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKLIHPFI 260
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 66 RDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFR----VSELNEDSVRGIAESGKAYV 121
R D+ +L FL+ RKF ++ + KWR+++ + + + D IA+ Y
Sbjct: 49 RLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYY 108
Query: 122 HDFLDINERPVLIV-VASKHLPAVHDPVEDEKLC---VFFIEKALSKLPPGKEQILG--- 174
H D + RPV + + +L ++ +E++ V+ E + P + G
Sbjct: 109 HK-TDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLV 167
Query: 175 -----IIDLRGFGTENADLKFLTFLFDVFYY---YHPKRLGEVLFVEAPFVFKPFWQLTK 226
I+DL+G +A ++++ + Y Y+P+R+G+ + APF F ++L K
Sbjct: 168 ETSCTIMDLKGISISSA-YSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFK 226
Query: 227 PLL 229
P L
Sbjct: 227 PFL 229
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 79/206 (38%), Gaps = 25/206 (12%)
Query: 35 QSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAI 94
Q+ +L + V ER+++ D L F++ RKF++ + L +
Sbjct: 70 QAQAASGEELAVAVAERVQEK------------DSGFFLRFIRARKFNVGRAYELLRGYV 117
Query: 95 KWRQEF--RVSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEK 152
+R ++ L+ ++VR E+G V D R V++ E +
Sbjct: 118 NFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQ 177
Query: 153 LCVFFIEKALSKLPPGKEQILGIIDLRGFGTENA------DL-KFLTFLFDVFYYYHPKR 205
F +EK L I + +GF + A DL K + L D F P R
Sbjct: 178 AYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSF----PAR 233
Query: 206 LGEVLFVEAPFVFKPFWQLTKPLLKS 231
+ F+ P+ F + + KP LKS
Sbjct: 234 FKAIHFIHQPWYFTTTYNVVKPFLKS 259
>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And
Group-1 Pollen Allergen From Maize
Length = 245
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 41 SRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEF 100
+K+V +++ +Y ++ V K DD D++L ++D K S E KL+ WR +
Sbjct: 145 GQKIVFHIEKGCNPNYLAVLV-KYVADDGDIVLMEIQD-KLSAEWKPMKLSWGAIWRMDT 202
Query: 101 RVSELNEDSVRGIAESGKAYV-HDFLDINERPVLIVVAS 138
+ S+R +ESGK + D + N RP + ++
Sbjct: 203 AKALKGPFSIRLTSESGKKVIAKDVIPANWRPDAVYTSN 241
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 13/170 (7%)
Query: 69 EDMILWFLKDRKFSIEESLAKLTKAIKWRQEFR--VSELNEDSVRGIAESGKAYVHDFLD 126
+ +L FL+ R F ++ + L KWR E ++L+ S+ G+ ++G V D
Sbjct: 49 DSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRD 108
Query: 127 INERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFG---- 182
VLI + P V + ++ + E + ++ + I I DL G+
Sbjct: 109 PTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHA 168
Query: 183 ---TENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLL 229
T + K L D F P ++ + + P +F + + KP L
Sbjct: 169 FQITPSVAKKIAAVLTDSF----PLKVRGIHLINEPVIFHAVFSMIKPFL 214
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 13/170 (7%)
Query: 69 EDMILWFLKDRKFSIEESLAKLTKAIKWRQEFR--VSELNEDSVRGIAESGKAYVHDFLD 126
+ +L FL+ R F ++ + L KWR E ++L+ S+ G+ ++G V D
Sbjct: 33 DSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRD 92
Query: 127 INERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFG---- 182
VLI + P V + ++ + E + ++ + I I DL G+
Sbjct: 93 PTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHA 152
Query: 183 ---TENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLL 229
T + K L D F P ++ + + P +F + KP L
Sbjct: 153 FQITPSVAKKIAAVLTDSF----PLKVRGIHLINEPVIFHAVFSXIKPFL 198
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 25/206 (12%)
Query: 35 QSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAI 94
Q+ +L + V ER+++ D L F++ RKF++ + L +
Sbjct: 70 QAQAASGEELAVAVAERVQEK------------DSGFFLRFIRARKFNVGRAYELLRGYV 117
Query: 95 KWRQEF--RVSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEK 152
+R ++ L+ ++VR E+G V D R V + E +
Sbjct: 118 NFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVXLFNIENWQSQEITFDEILQ 177
Query: 153 LCVFFIEKALSKLPPGKEQILGIIDLRGFGTENA------DL-KFLTFLFDVFYYYHPKR 205
F +EK L I + +GF + A DL K + L D F P
Sbjct: 178 AYCFILEKLLENEETQINGFCIIENFKGFTXQQAASLRTSDLRKXVDXLQDSF----PAW 233
Query: 206 LGEVLFVEAPFVFKPFWQLTKPLLKS 231
+ F+ P+ F + + KP LKS
Sbjct: 234 FKAIHFIHQPWYFTTTYNVVKPFLKS 259
>pdb|3AL8|B Chain B, Plexin A2 SEMAPHORIN 6A COMPLEX
pdb|3AL9|A Chain A, Mouse Plexin A2 Extracellular Domain
pdb|3AL9|B Chain B, Mouse Plexin A2 Extracellular Domain
Length = 539
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 113 IAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFI 158
+A+ G+A F ++ VL + SK H P +D LC F I
Sbjct: 285 LAKPGEALAQAFNISSDEDVLFAIFSKGQKQYHHPPDDSALCAFPI 330
>pdb|2WMH|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
In Complex With The H-Disaccharide Blood Group Antigen
Length = 581
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 84 EESLAKLTKAIKWRQEFRVSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKH-LP 142
+E + TKA+ W E R+S LN + +E L H LP
Sbjct: 328 KEEVVNRTKAVFWNGEGRISSLN------------GFYQGLYSNDETMPLYNNGRYHILP 375
Query: 143 AVHDPVEDEKLCVFF 157
+H+ ++ EK+ F
Sbjct: 376 VIHEKIDKEKISSIF 390
>pdb|2WMF|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
( Sp4gh98) In Its Native Form
Length = 581
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 84 EESLAKLTKAIKWRQEFRVSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKH-LP 142
+E + TKA+ W E R+S LN + +E L H LP
Sbjct: 328 KEEVVNRTKAVFWNGEGRISSLN------------GFYQGLYSNDETMPLYNNGRYHILP 375
Query: 143 AVHDPVEDEKLCVFF 157
+H+ ++ EK+ F
Sbjct: 376 VIHEKIDKEKISSIF 390
>pdb|2WMG|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
( Sp4gh98) In Complex With The Lewisy Pentasaccharide
Blood Group Antigen
Length = 581
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 84 EESLAKLTKAIKWRQEFRVSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKH-LP 142
+E + TKA+ W E R+S LN + +E L H LP
Sbjct: 328 KEEVVNRTKAVFWNGEGRISSLN------------GFYQGLYSNDETMPLYNNGRYHILP 375
Query: 143 AVHDPVEDEKLCVFF 157
+H+ ++ EK+ F
Sbjct: 376 VIHEKIDKEKISSIF 390
>pdb|3OKT|A Chain A, Mouse Plexin A2, Extracellular Domains 1-4
pdb|3OKY|A Chain A, Plexin A2 In Complex With Semaphorin 6a
pdb|4GZA|A Chain A, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
pdb|4GZA|B Chain B, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
pdb|4GZA|C Chain C, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
pdb|4GZA|D Chain D, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
pdb|4GZA|E Chain E, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
pdb|4GZA|F Chain F, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 681
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 113 IAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFI 158
+A+ G+A F ++ VL + SK H P +D LC F I
Sbjct: 284 LAKPGEALAQAFNISSDEDVLFAIFSKGQKQYHHPPDDSALCAFPI 329
>pdb|2Y3A|A Chain A, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 1092
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 41 SRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEF 100
+K + +KE L++D P+ + ++ D+I +D + + +SL KL +IKW +
Sbjct: 553 GKKFLAVLKEILDRD----PLSQLCENEMDLIWTLRQDCRENFPQSLPKLLLSIKWNKLE 608
Query: 101 RVSEL 105
V++L
Sbjct: 609 DVAQL 613
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,365,764
Number of Sequences: 62578
Number of extensions: 342671
Number of successful extensions: 723
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 24
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)