Query 023175
Match_columns 286
No_of_seqs 152 out of 1539
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 17:36:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023175.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023175hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hx3_A Retinaldehyde-binding p 100.0 2.6E-50 9E-55 361.4 18.0 238 27-271 44-294 (316)
2 1r5l_A Alpha-TTP, protein (alp 100.0 2.6E-47 8.9E-52 333.4 17.1 229 35-274 3-238 (262)
3 3q8g_A CRAL-TRIO domain-contai 100.0 1.4E-45 4.8E-50 330.9 19.2 226 34-272 33-283 (320)
4 1aua_A Phosphatidylinositol tr 100.0 1.6E-45 5.6E-50 327.7 17.9 226 35-272 24-268 (296)
5 1olm_A SEC14-like protein 2; l 100.0 8.9E-45 3E-49 336.0 18.1 224 34-271 5-247 (403)
6 3pg7_A Neurofibromin; SEC lipi 99.2 6.2E-11 2.1E-15 102.3 8.3 121 115-242 9-132 (256)
7 3peg_A Neurofibromin; SEC14 do 99.0 3.8E-10 1.3E-14 98.9 4.9 120 116-241 28-150 (290)
8 1wgl_A TOLL-interacting protei 88.0 1.1 3.9E-05 28.8 5.1 38 43-92 11-48 (59)
9 2dhy_A CUE domain-containing p 86.6 2.1 7.2E-05 28.3 5.9 39 43-93 20-58 (67)
10 2di0_A Activating signal coint 83.4 3.5 0.00012 27.5 5.9 45 36-92 8-52 (71)
11 2dam_A ETEA protein; KIAA0887, 75.4 8.5 0.00029 25.2 5.8 44 35-91 13-56 (67)
12 1ufz_A Hypothetical protein BA 74.1 8.3 0.00028 26.4 5.5 42 41-93 34-75 (83)
13 1vg5_A RSGI RUH-014, rhomboid 73.9 8.4 0.00029 25.8 5.5 26 67-92 41-66 (73)
14 2dal_A Protein KIAA0794; FAS a 73.3 8 0.00027 24.9 5.2 39 39-90 13-51 (62)
15 1z96_A DNA-damage, UBA-domain 69.6 6.7 0.00023 22.4 3.8 23 68-90 17-39 (40)
16 1otr_A Protein CUE2; protein-p 69.5 6.1 0.00021 24.3 3.7 28 66-93 17-44 (49)
17 1q02_A Sequestosome 1; helical 68.9 5.1 0.00017 24.8 3.2 24 68-91 25-48 (52)
18 2bwb_A Ubiquitin-like protein 67.3 7.5 0.00025 23.4 3.8 26 66-91 19-44 (46)
19 2dah_A Ubiquilin-3; UBA domain 64.7 11 0.00037 23.6 4.3 27 67-93 22-48 (54)
20 2dna_A Unnamed protein product 64.0 10 0.00035 24.9 4.2 28 66-93 31-58 (67)
21 1wr1_B Ubiquitin-like protein 62.6 11 0.00036 24.0 4.0 27 66-92 29-55 (58)
22 1v92_A NSFL1 cofactor P47; 3-h 62.0 6.6 0.00023 23.3 2.8 23 68-90 19-41 (46)
23 2knz_A Ubiquilin-4; cytoplasm, 60.9 10 0.00035 23.5 3.7 27 66-92 23-49 (53)
24 3e21_A HFAF1, FAS-associated f 58.5 7.6 0.00026 23.3 2.6 36 41-89 5-41 (45)
25 1vej_A Riken cDNA 4931431F19; 56.3 15 0.0005 24.7 4.0 26 67-92 42-67 (74)
26 2jy5_A Ubiquilin-1; UBA, alter 54.7 14 0.00048 22.7 3.5 26 66-91 24-49 (52)
27 1ify_A HHR23A, UV excision rep 53.5 12 0.00041 22.7 3.0 26 67-92 20-45 (49)
28 3p0c_A Nischarin; structural g 53.4 19 0.00065 26.7 4.7 40 37-84 90-129 (130)
29 1wji_A Tudor domain containing 53.3 20 0.00069 23.0 4.2 27 67-93 21-47 (63)
30 2g3q_A Protein YBL047C; endocy 52.8 17 0.00058 21.2 3.5 25 67-91 16-40 (43)
31 2dzl_A Protein FAM100B; UBA-li 51.2 16 0.00056 23.7 3.5 23 68-90 31-53 (66)
32 2jp7_A MRNA export factor MEX6 50.8 44 0.0015 21.0 6.1 28 66-93 18-45 (57)
33 3u53_A BIS(5'-nucleosyl)-tetra 49.9 11 0.00038 28.3 3.0 50 1-52 1-63 (155)
34 1oai_A Nuclear RNA export fact 48.7 27 0.00094 22.1 4.2 29 66-94 19-47 (59)
35 2cwb_A Chimera of immunoglobul 48.3 22 0.00074 25.7 4.1 27 66-92 78-104 (108)
36 1wgn_A UBAP1, ubiquitin associ 48.0 27 0.00094 22.4 4.0 27 67-93 31-57 (63)
37 2l2l_A Transcriptional repress 43.6 25 0.00085 20.4 3.0 33 37-80 2-34 (43)
38 1veg_A NEDD8 ultimate buster-1 43.4 34 0.0012 23.4 4.2 27 67-93 41-67 (83)
39 2cp8_A NEXT to BRCA1 gene 1 pr 42.9 44 0.0015 20.8 4.3 29 65-93 20-48 (54)
40 1p3q_Q VPS9P, vacuolar protein 40.8 17 0.00059 22.7 2.2 27 66-92 25-51 (54)
41 2dak_A Ubiquitin carboxyl-term 40.8 35 0.0012 21.8 3.8 26 68-93 22-47 (63)
42 2d9s_A CBL E3 ubiquitin protei 39.9 52 0.0018 20.4 4.2 28 67-94 21-48 (53)
43 2ooa_A E3 ubiquitin-protein li 37.6 64 0.0022 19.9 4.4 28 66-93 22-49 (52)
44 2dae_A KIAA0733 protein; mitog 37.5 55 0.0019 21.6 4.3 39 43-93 12-50 (75)
45 2q3l_A Uncharacterized protein 36.9 70 0.0024 23.3 5.6 83 145-233 30-112 (126)
46 1wiv_A UBP14, ubiquitin-specif 34.7 41 0.0014 22.3 3.5 26 67-92 41-66 (73)
47 3itf_A Periplasmic adaptor pro 31.3 1.7E+02 0.0058 22.1 7.0 63 31-99 41-103 (145)
48 1whc_A RSGI RUH-027, UBA/UBX 3 30.1 71 0.0024 20.4 4.0 27 67-93 21-48 (64)
49 1dv0_A DNA repair protein HHR2 29.4 53 0.0018 19.6 3.1 25 66-90 15-39 (47)
50 3ct6_A PTS-dependent dihydroxy 28.6 43 0.0015 24.8 3.2 43 170-225 59-101 (131)
51 2cp9_A EF-TS, EF-TSMT, elongat 28.4 36 0.0012 22.0 2.3 38 43-93 11-48 (64)
52 2dai_A Ubadc1, ubiquitin assoc 27.7 73 0.0025 21.6 3.9 26 68-93 42-67 (83)
53 3lay_A Zinc resistance-associa 27.4 2.2E+02 0.0075 22.2 7.8 66 33-101 65-130 (175)
54 1wj7_A Hypothetical protein (R 27.3 63 0.0022 23.0 3.6 27 67-93 52-78 (104)
55 2qsf_X RAD23, UV excision repa 26.7 1.6E+02 0.0055 23.0 6.2 44 33-91 123-166 (171)
56 2cpw_A CBL-interacting protein 26.6 78 0.0027 20.2 3.7 25 68-92 32-57 (64)
57 2oo3_A Protein involved in cat 25.4 32 0.0011 29.3 2.1 28 205-232 236-263 (283)
58 3kdg_A DNA mismatch repair pro 24.6 1E+02 0.0035 24.3 5.0 102 33-135 64-183 (197)
59 1vdl_A Ubiquitin carboxyl-term 24.0 97 0.0033 20.6 3.7 39 42-92 25-63 (80)
60 2ekk_A UBA domain from E3 ubiq 21.5 1.1E+02 0.0039 17.8 3.6 23 68-91 22-44 (47)
61 1ju8_A Leginsulin, albumin 1; 21.4 38 0.0013 19.1 1.2 14 5-18 6-19 (37)
62 1l6x_B Minimized B-domain of p 21.4 86 0.003 17.4 2.6 17 34-50 16-32 (34)
63 2dkl_A Trinucleotide repeat co 21.4 81 0.0028 21.5 3.2 26 68-93 34-59 (85)
64 2dag_A Ubiquitin carboxyl-term 20.7 1.3E+02 0.0044 19.8 4.0 26 68-93 22-48 (74)
65 3jqo_C TRAN protein; helical o 20.2 54 0.0018 18.1 1.6 25 6-30 1-25 (34)
66 2lva_A Ubiquitin carboxyl-term 25.6 22 0.00074 26.2 0.0 42 40-93 17-58 (129)
No 1
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=2.6e-50 Score=361.38 Aligned_cols=238 Identities=17% Similarity=0.211 Sum_probs=199.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHhhcCCCCCC-------CCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 023175 27 FKAPVKNCQSDPHESRKLVLQVKERLEKDYNSLPVG-------KNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQE 99 (286)
Q Consensus 27 ~~~~~~e~~~~~e~~~~~i~~lr~~l~~~~~~lp~~-------~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~~~wR~~ 99 (286)
.+.+++|++|+|+.++++|++||+||+++ ++++.. .....||.+|+||||||+||+++|.++|+++++||++
T Consensus 44 ~~~a~~eL~E~~~~~~~~l~~LR~wi~~~-p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~ 122 (316)
T 3hx3_A 44 LQKAKDELNEREETREEAVRELQEMVQAQ-AASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQ 122 (316)
T ss_dssp ------------CHHHHHHHHHHHHHHHH-HTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHhC-CCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 45677899999999999999999999986 455311 1146799999999999999999999999999999999
Q ss_pred cC--CCCCChhhhHHHHhcCceeeccCCCCCCCcEEEEEcCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccEEEEEe
Q 023175 100 FR--VSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIID 177 (286)
Q Consensus 100 ~~--~~~l~~~~~~~~l~~~~~~~~g~~D~~Grpv~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~g~~vIiD 177 (286)
++ .++++++++...++.|..+.++++|++||||+++++++++++..+.+++.|++++++|.++..++.+++|+++|+|
T Consensus 123 ~~~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD 202 (316)
T 3hx3_A 123 YPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIEN 202 (316)
T ss_dssp CGGGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEE
T ss_pred CchhhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEE
Confidence 88 4677888888888888866554489999999999999999988999999999999999998765667899999999
Q ss_pred CCCCCCCCC---CHHHHHHHHHHHhhhcccccccEEEEeCCcchHHHHHHhhhcccccc-cceeeccCCcchhhHHHHhh
Q 023175 178 LRGFGTENA---DLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYA-SLKPSGRNISLKQRCQTTLE 253 (286)
Q Consensus 178 ~~g~s~~~~---~~~~~k~~~~~lq~~yP~rl~~i~iiN~P~~f~~~w~lvkpfL~~~t-~ki~~~~~~~~~~~~~~~l~ 253 (286)
++|+|++|+ +++.++.++.++|++||+|++++||||+|++|+++|+++||||+++| +||+|++++ .+.|.
T Consensus 203 ~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~------~~~L~ 276 (316)
T 3hx3_A 203 FKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDD------LSGFY 276 (316)
T ss_dssp CTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETC------CHHHH
T ss_pred CCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCC------HHHHH
Confidence 999999874 78899999999999999999999999999999999999999999999 599988532 23577
Q ss_pred hhcCccccchhcCCCccc
Q 023175 254 SRLLVKSLHSCLAALAGL 271 (286)
Q Consensus 254 ~~i~~~~LP~~~GG~~~~ 271 (286)
+++++++||++|||+++.
T Consensus 277 ~~I~~~~LP~eyGG~~~~ 294 (316)
T 3hx3_A 277 QEIDENILPSDFGGTLPK 294 (316)
T ss_dssp HHSCGGGSBGGGTSSBCC
T ss_pred hhCCHhhCcHhhCCCCCC
Confidence 899999999999999973
No 2
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=2.6e-47 Score=333.41 Aligned_cols=229 Identities=18% Similarity=0.231 Sum_probs=195.0
Q ss_pred CCChHHHHHHHHHHHHHHHhhcC-CCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcC--CCCCChhhhH
Q 023175 35 QSDPHESRKLVLQVKERLEKDYN-SLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFR--VSELNEDSVR 111 (286)
Q Consensus 35 ~~~~e~~~~~i~~lr~~l~~~~~-~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~~~wR~~~~--~~~l~~~~~~ 111 (286)
++|+++ +++|++||+++++... .+| ...+|.+|+|||||++||+++|.++|+++++||++++ ..+++++++.
T Consensus 3 ~ls~~~-~~~l~~lr~~l~~~~~~~~~----~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~ 77 (262)
T 1r5l_A 3 HMSPLL-QPGLAALRRRAREAGVPLAP----LPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSII 77 (262)
T ss_dssp -------CTTHHHHHHHHHHHTCCCSS----SCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGGGTH
T ss_pred CccHHH-HHHHHHHHHHHHhCCcccCC----CCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChHHHH
Confidence 345544 5799999999998642 233 5679999999999999999999999999999999986 2456777788
Q ss_pred HHHhcCceeeccCCCCCCCcEEEEEcCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccEEEEEeCCCCCCCCC---CH
Q 023175 112 GIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENA---DL 188 (286)
Q Consensus 112 ~~l~~~~~~~~g~~D~~Grpv~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~g~~vIiD~~g~s~~~~---~~ 188 (286)
..+..|...+.+++|++||||+++++++++++.++..++.|+.++++|.++..++.+++|+++|+|++|+|++|+ ++
T Consensus 78 ~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~ 157 (262)
T 1r5l_A 78 GLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITP 157 (262)
T ss_dssp HHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCH
T ss_pred HHHHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCH
Confidence 888888765544489999999999999999988899999999999999887665556789999999999999886 67
Q ss_pred HHHHHHHHHHhhhcccccccEEEEeCCcchHHHHHHhhhcccccc-cceeeccCCcchhhHHHHhhhhcCccccchhcCC
Q 023175 189 KFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYA-SLKPSGRNISLKQRCQTTLESRLLVKSLHSCLAA 267 (286)
Q Consensus 189 ~~~k~~~~~lq~~yP~rl~~i~iiN~P~~f~~~w~lvkpfL~~~t-~ki~~~~~~~~~~~~~~~l~~~i~~~~LP~~~GG 267 (286)
+.++.+++++|++||+|++++||||+|++|+++|+++||||+++| +||+|+++ +..+.|.++++ ++||++|||
T Consensus 158 ~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpfl~~~t~~Ki~~~~~-----~~~~~L~~~i~-~~LP~~yGG 231 (262)
T 1r5l_A 158 SVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGN-----NYKQSLLQHFP-DILPLEYGG 231 (262)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCS-----SCHHHHHHHST-TTSCGGGTC
T ss_pred HHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHhcCHHHHhheEEeCC-----CcHHHHHHHhh-hhCcHhhCC
Confidence 999999999999999999999999999999999999999999999 59999864 23456788999 999999999
Q ss_pred Cccchhh
Q 023175 268 LAGLIFA 274 (286)
Q Consensus 268 ~~~~~~~ 274 (286)
+++...+
T Consensus 232 ~~~~~~~ 238 (262)
T 1r5l_A 232 EEFSMED 238 (262)
T ss_dssp SSCCHHH
T ss_pred CCCCHHH
Confidence 9986543
No 3
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=1.4e-45 Score=330.87 Aligned_cols=226 Identities=22% Similarity=0.298 Sum_probs=189.5
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCCCCChhh-h--
Q 023175 34 CQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDS-V-- 110 (286)
Q Consensus 34 ~~~~~e~~~~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~~~wR~~~~~~~l~~~~-~-- 110 (286)
.++++ +++++|++||+||++.. ++ ...||.+|+|||||++||+++|.++|+++++||++++++++..+. .
T Consensus 33 ~~lt~-~q~~~l~~lR~~l~~~~--~~----~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~ 105 (320)
T 3q8g_A 33 GNLTK-EQEEALLQFRSILLEKN--YK----ERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNK 105 (320)
T ss_dssp TCCCH-HHHHHHHHHHHHHHHTT--CC----SSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTH
T ss_pred CCCCH-HHHHHHHHHHHHHHhcC--CC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcccccccccccc
Confidence 35565 45689999999998762 33 478999999999999999999999999999999999987765321 1
Q ss_pred ------HH-HHhcCceeeccCCCCCCCcEEEEEcCCCCCCC----CChHHHHHHHHHHHHHHHHh--------CCCCccc
Q 023175 111 ------RG-IAESGKAYVHDFLDINERPVLIVVASKHLPAV----HDPVEDEKLCVFFIEKALSK--------LPPGKEQ 171 (286)
Q Consensus 111 ------~~-~l~~~~~~~~g~~D~~Grpv~~~~~~~~~~~~----~~~~~~~r~~~~~lE~~~~~--------~~~~~~g 171 (286)
.. ..+.+..+++| +|++||||+++++|++++.. .+.++++|++++.+|.+++. ....+++
T Consensus 106 ~~~~~e~~~~~~~~~~~~~g-~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~ 184 (320)
T 3q8g_A 106 EAEDKERIKLAKMYPQYYHH-VDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIET 184 (320)
T ss_dssp HHHHHHHHHHHTTSCEEEEE-ECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCC
T ss_pred ccchhHHHHHHHhCCceecC-CCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcce
Confidence 11 23345667888 89999999999999987653 37788999999999987642 1224678
Q ss_pred EEEEEeCCCCCCCCCC--HHHHHHHHHHHhhhcccccccEEEEeCCcchHHHHHHhhhcccccc-cceeeccCCcchhhH
Q 023175 172 ILGIIDLRGFGTENAD--LKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYA-SLKPSGRNISLKQRC 248 (286)
Q Consensus 172 ~~vIiD~~g~s~~~~~--~~~~k~~~~~lq~~yP~rl~~i~iiN~P~~f~~~w~lvkpfL~~~t-~ki~~~~~~~~~~~~ 248 (286)
+++|+|++|+|++|++ ++.++.++.++|++||+|++++||||+|++|+++|+++||||+++| +||+|+++ +.
T Consensus 185 ~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~-----~~ 259 (320)
T 3q8g_A 185 SCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGS-----SY 259 (320)
T ss_dssp EEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCT-----TH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCC-----Cc
Confidence 9999999999999875 6889999999999999999999999999999999999999999999 59999964 24
Q ss_pred HHHhhhhcCccccchhcCCCccch
Q 023175 249 QTTLESRLLVKSLHSCLAALAGLI 272 (286)
Q Consensus 249 ~~~l~~~i~~~~LP~~~GG~~~~~ 272 (286)
.+.|.+.+++++||++|||++++.
T Consensus 260 ~~~L~~~i~~~~LP~~yGG~~~~~ 283 (320)
T 3q8g_A 260 KKELLKQIPIENLPVKYGGTSVLH 283 (320)
T ss_dssp HHHHHHHSCGGGSBGGGTSCBCCS
T ss_pred HHHHHhhCChhhCChhhCCCCCCC
Confidence 566888999999999999999874
No 4
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=1.6e-45 Score=327.69 Aligned_cols=226 Identities=21% Similarity=0.267 Sum_probs=187.6
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCCCCChhh---hH
Q 023175 35 QSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDS---VR 111 (286)
Q Consensus 35 ~~~~e~~~~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~~~wR~~~~~~~l~~~~---~~ 111 (286)
++.+++++++|++||+|+++.. ++ ...||.+|+|||||++||+++|.++|+++++||++++++++..+. ..
T Consensus 24 ~~l~~~q~~~l~~lr~~l~~~~--~~----~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~ 97 (296)
T 1aua_A 24 GNLDSAQEKALAELRKLLEDAG--FI----ERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEK 97 (296)
T ss_dssp TTCCTTHHHHHHHHHHHHHHTT--CC----SSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTH
T ss_pred CCCCHHHHHHHHHHHHHHHhcC--CC----CCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcH
Confidence 3333455789999999998752 33 567999999999999999999999999999999999876543221 11
Q ss_pred HHHhc-CceeeccCCCCCCCcEEEEEcCCCCCC----CCChHHHHHHHHHHHHHHHHhC--------CCCcccEEEEEeC
Q 023175 112 GIAES-GKAYVHDFLDINERPVLIVVASKHLPA----VHDPVEDEKLCVFFIEKALSKL--------PPGKEQILGIIDL 178 (286)
Q Consensus 112 ~~l~~-~~~~~~g~~D~~Grpv~~~~~~~~~~~----~~~~~~~~r~~~~~lE~~~~~~--------~~~~~g~~vIiD~ 178 (286)
..+.. ...+++| +|++||||++++++++++. ..+.+++++++++.+|.+++.+ ..+++|+++|+|+
T Consensus 98 ~~~~~~~~~~~~g-~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~ 176 (296)
T 1aua_A 98 PLIAKFYPQYYHK-TDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDL 176 (296)
T ss_dssp HHHGGGSCCEEEE-ECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEEC
T ss_pred HHHHHhCCceecc-cCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEEC
Confidence 22332 3346778 8999999999999998754 2578899999999999876532 2357899999999
Q ss_pred CCCCCCCCC--HHHHHHHHHHHhhhcccccccEEEEeCCcchHHHHHHhhhcccccc-cceeeccCCcchhhHHHHhhhh
Q 023175 179 RGFGTENAD--LKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYA-SLKPSGRNISLKQRCQTTLESR 255 (286)
Q Consensus 179 ~g~s~~~~~--~~~~k~~~~~lq~~yP~rl~~i~iiN~P~~f~~~w~lvkpfL~~~t-~ki~~~~~~~~~~~~~~~l~~~ 255 (286)
+|+|++|++ ++.++.++.++|++||+|++++||||+|++|+++|+++||||+++| +||+|+++ +..+.|.++
T Consensus 177 ~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~-----~~~~~L~~~ 251 (296)
T 1aua_A 177 KGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGS-----SYQKELLKQ 251 (296)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCS-----CCHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCc-----ccHHHHHhh
Confidence 999999986 6889999999999999999999999999999999999999999999 59999964 235568899
Q ss_pred cCccccchhcCCCccch
Q 023175 256 LLVKSLHSCLAALAGLI 272 (286)
Q Consensus 256 i~~~~LP~~~GG~~~~~ 272 (286)
+++++||++|||++...
T Consensus 252 i~~~~LP~~yGG~~~~~ 268 (296)
T 1aua_A 252 IPAENLPVKFGGKSEVD 268 (296)
T ss_dssp SCSSSSBGGGTSCBCCC
T ss_pred CCHhhCcHHhCCCCCCC
Confidence 99999999999999654
No 5
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=8.9e-45 Score=336.03 Aligned_cols=224 Identities=16% Similarity=0.189 Sum_probs=191.6
Q ss_pred CCCChHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcCCCCCCh----hh
Q 023175 34 CQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNE----DS 109 (286)
Q Consensus 34 ~~~~~e~~~~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~~~wR~~~~~~~l~~----~~ 109 (286)
+++.+++++++|++||+++++..+++| ..||.+|+|||||++||+++|.++|+++++||++++++++.. +.
T Consensus 5 ~~~l~~~q~~~l~~lr~~l~~~~~~l~-----~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~ 79 (403)
T 1olm_A 5 VGDLSPRQKEALAKFRENVQDVLPALP-----NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEV 79 (403)
T ss_dssp TTBCCHHHHHHHHHHHHHHGGGGGGSS-----CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCCHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhhccCCC-----CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCCHHH
Confidence 344556667899999999998654554 578999999999999999999999999999999998766532 23
Q ss_pred hHHHHhcCceeeccCCCCCCCcEEEEEcCCCCCC----CCChHHHHHHHHHHHHHHHHhCCC-------CcccEEEEEeC
Q 023175 110 VRGIAESGKAYVHDFLDINERPVLIVVASKHLPA----VHDPVEDEKLCVFFIEKALSKLPP-------GKEQILGIIDL 178 (286)
Q Consensus 110 ~~~~l~~~~~~~~g~~D~~Grpv~~~~~~~~~~~----~~~~~~~~r~~~~~lE~~~~~~~~-------~~~g~~vIiD~ 178 (286)
+...+ ..+++| +|++||||+++++++++++ ..+.++++|++++++|.+++.++. +++|+++|+|+
T Consensus 80 ~~~~~---~~~~~g-~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~ 155 (403)
T 1olm_A 80 IQQYL---SGGMCG-YDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDC 155 (403)
T ss_dssp HHHHC---CBEEEE-ECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEEC
T ss_pred HHHhC---Cceeec-cCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEEC
Confidence 33333 234578 7999999999999998875 478999999999999999876542 47899999999
Q ss_pred CCCCCCCCC---HHHHHHHHHHHhhhcccccccEEEEeCCcchHHHHHHhhhcccccc-cceeeccCCcchhhHHHHhhh
Q 023175 179 RGFGTENAD---LKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYA-SLKPSGRNISLKQRCQTTLES 254 (286)
Q Consensus 179 ~g~s~~~~~---~~~~k~~~~~lq~~yP~rl~~i~iiN~P~~f~~~w~lvkpfL~~~t-~ki~~~~~~~~~~~~~~~l~~ 254 (286)
+|++++|++ ++.++.+++++|++||+|++++||||+|++|+++|+++||||+++| +||+|+++ ++.+.|.+
T Consensus 156 ~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI~~~~~-----~~~~~L~~ 230 (403)
T 1olm_A 156 EGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGA-----NWKEVLLK 230 (403)
T ss_dssp TTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCT-----THHHHHTT
T ss_pred CCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceEEEECh-----hHHHHHHh
Confidence 999999984 5789999999999999999999999999999999999999999999 59999863 44567889
Q ss_pred hcCccccchhcCCCccc
Q 023175 255 RLLVKSLHSCLAALAGL 271 (286)
Q Consensus 255 ~i~~~~LP~~~GG~~~~ 271 (286)
++++++||++|||++..
T Consensus 231 ~I~~~~LP~~yGG~~~~ 247 (403)
T 1olm_A 231 HISPDQVPVEYGGTMTD 247 (403)
T ss_dssp TSCGGGSBGGGTSSBCC
T ss_pred hcChhhCchhhCCCcCC
Confidence 99999999999999865
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.16 E-value=6.2e-11 Score=102.29 Aligned_cols=121 Identities=12% Similarity=0.036 Sum_probs=92.5
Q ss_pred hcCceeeccCCCCCCCcEEEEEcCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccEEEEEeCCCCCCCCC-CHHHHHH
Q 023175 115 ESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENA-DLKFLTF 193 (286)
Q Consensus 115 ~~~~~~~~g~~D~~Grpv~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~g~~vIiD~~g~s~~~~-~~~~~k~ 193 (286)
+.+.++..| .|++||||+++..++......+.+.++.+++..++ .+ -...+.+|+|+.|++..+. +.+.++.
T Consensus 9 ~~~ify~~G-~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~----~~--~~~~y~lV~d~T~~~~~n~p~~~wl~~ 81 (256)
T 3pg7_A 9 TLSIFYQAG-TSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLK----PY--YAKPYEIVVDLTHTGPSNRFKTDFLSK 81 (256)
T ss_dssp HHTSEEEEE-ECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHT----TT--TTSCEEEEEECTTCCGGGCCCHHHHHH
T ss_pred HcCCEEEcC-cCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHH----Hh--cCCCeEEEEECCCCCcccCCcHHHHHH
Confidence 445666667 89999999999999887655555444444443333 22 2457999999999998765 5789999
Q ss_pred HHHHHhhhcccccccEEEEeCCcchHHHHHHh-hhcccccc-cceeeccCC
Q 023175 194 LFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLT-KPLLKSYA-SLKPSGRNI 242 (286)
Q Consensus 194 ~~~~lq~~yP~rl~~i~iiN~P~~f~~~w~lv-kpfL~~~t-~ki~~~~~~ 242 (286)
+.+++-..|...++++||+|++++|+..|+.+ ++|.+.+. +|++++++-
T Consensus 82 ~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl 132 (256)
T 3pg7_A 82 WFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCP 132 (256)
T ss_dssp TTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESST
T ss_pred HHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCH
Confidence 99999999999999999999999999777665 55555565 599998653
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.96 E-value=3.8e-10 Score=98.86 Aligned_cols=120 Identities=12% Similarity=0.021 Sum_probs=90.9
Q ss_pred cCceeeccCCCCCCCcEEEEEcCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccEEEEEeCCCCCCCCC-CHHHHHHH
Q 023175 116 SGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENA-DLKFLTFL 194 (286)
Q Consensus 116 ~~~~~~~g~~D~~Grpv~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~g~~vIiD~~g~s~~~~-~~~~~k~~ 194 (286)
.+.++.+++.|++|+||+++..++......+.+.++-+++..++ .. -...+.+|+|+.+++..+- +.+.++.+
T Consensus 28 ~~~~f~~~g~d~dG~PViv~~~~~~~~~~~D~e~Lly~il~tl~----~~--~~~~y~lV~D~T~~~~~n~p~~~~l~~~ 101 (290)
T 3peg_A 28 TLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLK----PY--YAKPYEIVVDLTHTGPSNRFKTDFLSKW 101 (290)
T ss_dssp GTTTEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHT----TT--TTSCEEEEEECTTCCGGGCCCHHHHGGG
T ss_pred cCCeEEEeccCCCCCEEEEEEeecCCccCCCHHHHHHHHHHHHH----Hh--cCCCeEEEEEcCCCCccCCChHHHHHHH
Confidence 33445554489999999999999887655555444333333332 22 2358999999999998765 58899999
Q ss_pred HHHHhhhcccccccEEEEeCCcchHHHH-HHhhhcccccc-cceeeccC
Q 023175 195 FDVFYYYHPKRLGEVLFVEAPFVFKPFW-QLTKPLLKSYA-SLKPSGRN 241 (286)
Q Consensus 195 ~~~lq~~yP~rl~~i~iiN~P~~f~~~w-~lvkpfL~~~t-~ki~~~~~ 241 (286)
.+++...|+..++++|++|++.+|...+ ...++|.+.+. +|+.++..
T Consensus 102 ~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~ 150 (290)
T 3peg_A 102 FVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC 150 (290)
T ss_dssp GTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS
T ss_pred HHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC
Confidence 9999999999999999999999998755 56677777776 58887754
No 8
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=88.02 E-value=1.1 Score=28.79 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q 023175 43 KLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTK 92 (286)
Q Consensus 43 ~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~ 92 (286)
+.+++|++.+ | ..+...+..-|+++++|++.|.+.|-+
T Consensus 11 e~l~~L~emF----P--------~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 11 EDLKAIQDMF----P--------NMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHC----S--------SSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHC----C--------CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4666777654 2 458899999999999999999999865
No 9
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.61 E-value=2.1 Score=28.27 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 43 KLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 43 ~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
+++++|++.+ | ..+...+..-|+++++|++.|.+.|-+.
T Consensus 20 ~~v~~L~~MF----P--------~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 20 QAMDDFKTMF----P--------NMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp HHHHHHHHHC----S--------SSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHC----C--------CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4677777755 2 4578999999999999999999998764
No 10
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=83.39 E-value=3.5 Score=27.47 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q 023175 36 SDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTK 92 (286)
Q Consensus 36 ~~~e~~~~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~ 92 (286)
.+..+.+..|.++++.+ | .+.+.++.+.|..++.|+|.+...|-+
T Consensus 8 ~~~~~l~s~I~qV~DLf----P--------dLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 8 MCGVELDSLISQVKDLL----P--------DLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp CSSHHHHHHHHHHHHHC----C--------SSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHc----c--------cCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 35567778888888866 2 457999999999999999999988865
No 11
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.37 E-value=8.5 Score=25.22 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=32.2
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHH
Q 023175 35 QSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLT 91 (286)
Q Consensus 35 ~~~~e~~~~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~ 91 (286)
.+++++ .++|.+|...-. ..+......||..++||++.|+..+-
T Consensus 13 ~Ls~~~-~e~i~qF~~ITg------------~~d~~~A~~~Le~~~WnLe~Av~~ff 56 (67)
T 2dam_A 13 DLTQEQ-TEKLLQFQDLTG------------IESMDQCRHTLEQHNWNIEAAVQDRL 56 (67)
T ss_dssp CCCHHH-HHHHHHHHHHHC------------CSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hcChhH-HHHHHHHHHHhC------------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 456654 457777777542 12567899999999999999987764
No 12
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=74.10 E-value=8.3 Score=26.43 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 41 SRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 41 ~~~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
...+++++|.-+... ..+..|.+-...++||+++|...+-+-
T Consensus 34 L~SCLd~iR~VlGds-----------V~e~~Lv~ailk~dfD~ekALd~vL~~ 75 (83)
T 1ufz_A 34 LYSCLDHMREVLGDA-----------VPDDILTEAILKHKFDVQKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHHHTTTT-----------SCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccc-----------CCHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 344888888888642 358899999999999999999988654
No 13
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=73.92 E-value=8.4 Score=25.78 Aligned_cols=26 Identities=12% Similarity=-0.006 Sum_probs=22.3
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHH
Q 023175 67 DDEDMILWFLKDRKFSIEESLAKLTK 92 (286)
Q Consensus 67 ~~d~~LlRFLra~~~dv~~A~~~l~~ 92 (286)
.+.....+-|+.+++|+++|.+.|..
T Consensus 41 F~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 41 FDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 46788999999999999999987753
No 14
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.32 E-value=8 Score=24.88 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHH
Q 023175 39 HESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKL 90 (286)
Q Consensus 39 e~~~~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l 90 (286)
+...+.|.+|...- ..+......||..++||++.|+..+
T Consensus 13 ~~~~e~i~qF~~iT-------------g~~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 13 SALKGLIQQFTTIT-------------GASESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp HHHHHHHHHHHHHT-------------CCCHHHHHHHHHTTTSCHHHHHHHH
T ss_pred ccHHHHHHHHHHHh-------------CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 34456777777532 1257889999999999999998766
No 15
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=69.58 E-value=6.7 Score=22.40 Aligned_cols=23 Identities=13% Similarity=-0.052 Sum_probs=19.6
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHH
Q 023175 68 DEDMILWFLKDRKFSIEESLAKL 90 (286)
Q Consensus 68 ~d~~LlRFLra~~~dv~~A~~~l 90 (286)
+.....+.|+++++|++.|...|
T Consensus 17 ~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 17 DPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 56677899999999999998765
No 16
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=69.50 E-value=6.1 Score=24.28 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 66 RDDEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 66 ~~~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
..+...+..-|..+++|+++|.+.|-+.
T Consensus 17 ~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 17 AISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4577889999999999999999998654
No 17
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=68.87 E-value=5.1 Score=24.81 Aligned_cols=24 Identities=13% Similarity=0.396 Sum_probs=21.5
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHHH
Q 023175 68 DEDMILWFLKDRKFSIEESLAKLT 91 (286)
Q Consensus 68 ~d~~LlRFLra~~~dv~~A~~~l~ 91 (286)
+..||-|.|.+.++|+.+|.+.|.
T Consensus 25 egGWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 25 EGGWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp TTSHHHHHHHHTTTCHHHHHHHHT
T ss_pred cccHHHHHHHHccCCHHHHHHHhh
Confidence 457999999999999999999875
No 18
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=67.31 E-value=7.5 Score=23.41 Aligned_cols=26 Identities=23% Similarity=0.040 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHHH
Q 023175 66 RDDEDMILWFLKDRKFSIEESLAKLT 91 (286)
Q Consensus 66 ~~~d~~LlRFLra~~~dv~~A~~~l~ 91 (286)
..++...++-|+++++|+++|++.|-
T Consensus 19 F~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 19 FFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34667789999999999999998774
No 19
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=64.69 E-value=11 Score=23.57 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=22.6
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 67 DDEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 67 ~~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
.++...++-|+++++|+++|++.|-..
T Consensus 22 ~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 22 LNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 355667999999999999999988654
No 20
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=63.97 E-value=10 Score=24.89 Aligned_cols=28 Identities=14% Similarity=-0.012 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 66 RDDEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 66 ~~~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
..++..-++-|+++++|+++|++.|.+.
T Consensus 31 F~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 31 FVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp CCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4466777999999999999999988653
No 21
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=62.61 E-value=11 Score=24.04 Aligned_cols=27 Identities=22% Similarity=0.048 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHHHH
Q 023175 66 RDDEDMILWFLKDRKFSIEESLAKLTK 92 (286)
Q Consensus 66 ~~~d~~LlRFLra~~~dv~~A~~~l~~ 92 (286)
..++...++-|+++++|+++|++.|-.
T Consensus 29 F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 29 FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 346677899999999999999998864
No 22
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=62.01 E-value=6.6 Score=23.29 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.6
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHH
Q 023175 68 DEDMILWFLKDRKFSIEESLAKL 90 (286)
Q Consensus 68 ~d~~LlRFLra~~~dv~~A~~~l 90 (286)
+......||..++||++.|+..+
T Consensus 19 ~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 19 EEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 67889999999999999998765
No 23
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=60.89 E-value=10 Score=23.46 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHHHH
Q 023175 66 RDDEDMILWFLKDRKFSIEESLAKLTK 92 (286)
Q Consensus 66 ~~~d~~LlRFLra~~~dv~~A~~~l~~ 92 (286)
..++....+-|+++++|+++|++.|..
T Consensus 23 F~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 23 FINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 337788899999999999999998764
No 24
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=58.51 E-value=7.6 Score=23.35 Aligned_cols=36 Identities=6% Similarity=0.170 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCH-HHHHHHHhhcCCCHHHHHHH
Q 023175 41 SRKLVLQVKERLEKDYNSLPVGKNGRDDE-DMILWFLKDRKFSIEESLAK 89 (286)
Q Consensus 41 ~~~~i~~lr~~l~~~~~~lp~~~~~~~~d-~~LlRFLra~~~dv~~A~~~ 89 (286)
+.+.|.+|...-. .+| .....||.+++||++.|+..
T Consensus 5 ~de~ia~F~~iTG-------------~~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 5 REMILADFQACTG-------------IENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp HHHHHHHHHHHHC-------------CCCHHHHHHHHHHTTTCHHHHHTT
T ss_pred HHHHHHHHHHHHC-------------CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 3456777776321 233 78899999999999999753
No 25
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=56.26 E-value=15 Score=24.67 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=22.3
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHH
Q 023175 67 DDEDMILWFLKDRKFSIEESLAKLTK 92 (286)
Q Consensus 67 ~~d~~LlRFLra~~~dv~~A~~~l~~ 92 (286)
.++...++-|++.++|+++|++.|-.
T Consensus 42 ~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 42 ANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 36677899999999999999998754
No 26
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=54.68 E-value=14 Score=22.74 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHHH
Q 023175 66 RDDEDMILWFLKDRKFSIEESLAKLT 91 (286)
Q Consensus 66 ~~~d~~LlRFLra~~~dv~~A~~~l~ 91 (286)
..++...++-|+++++|+++|++.|.
T Consensus 24 F~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 24 FLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 33778889999999999999998774
No 27
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.46 E-value=12 Score=22.74 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=22.4
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHH
Q 023175 67 DDEDMILWFLKDRKFSIEESLAKLTK 92 (286)
Q Consensus 67 ~~d~~LlRFLra~~~dv~~A~~~l~~ 92 (286)
.+.....+-|+++++|+++|.+.|-.
T Consensus 20 F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 20 YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 36788999999999999999987754
No 28
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=53.45 E-value=19 Score=26.69 Aligned_cols=40 Identities=13% Similarity=0.008 Sum_probs=29.2
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHH
Q 023175 37 DPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIE 84 (286)
Q Consensus 37 ~~e~~~~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~ 84 (286)
.-|++...++.+.+.+-.. +.+ ..+..+..||...+||+.
T Consensus 90 ~ie~Rr~~Le~yL~~l~~~-p~l-------~~s~~l~~FL~~~~~~~~ 129 (130)
T 3p0c_A 90 LVEKREKDLEVYLQKLLAA-FPG-------VTPRVLAHFLHFHFYEIN 129 (130)
T ss_dssp SHHHHHHHHHHHHHHHHHT-SCS-------EECHHHHHHHHSCTTC--
T ss_pred HHHHHHHHHHHHHHHHHcC-hhh-------hcCHHHHHHhCCCccccc
Confidence 4578888888888888653 333 356789999999999864
No 29
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=53.34 E-value=20 Score=23.05 Aligned_cols=27 Identities=19% Similarity=0.100 Sum_probs=22.3
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 67 DDEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 67 ~~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
.+.....+-|+++++|+++|...|...
T Consensus 21 F~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 21 FSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 356778899999999999999877654
No 30
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=52.80 E-value=17 Score=21.15 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=20.9
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHH
Q 023175 67 DDEDMILWFLKDRKFSIEESLAKLT 91 (286)
Q Consensus 67 ~~d~~LlRFLra~~~dv~~A~~~l~ 91 (286)
.+.....+-|+++++|++.|...|-
T Consensus 16 F~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 16 FTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 3567788999999999999988764
No 31
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.25 E-value=16 Score=23.74 Aligned_cols=23 Identities=17% Similarity=0.314 Sum_probs=20.6
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHH
Q 023175 68 DEDMILWFLKDRKFSIEESLAKL 90 (286)
Q Consensus 68 ~d~~LlRFLra~~~dv~~A~~~l 90 (286)
++.....||.+++||++.|+..+
T Consensus 31 ~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 31 AADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 67789999999999999998766
No 32
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=50.76 E-value=44 Score=21.01 Aligned_cols=28 Identities=4% Similarity=0.221 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 66 RDDEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 66 ~~~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
..+-.+-.++|..++||.++|...+.+.
T Consensus 18 ~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 18 KLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp CSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3478899999999999999999998873
No 33
>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*
Probab=49.86 E-value=11 Score=28.33 Aligned_cols=50 Identities=22% Similarity=0.144 Sum_probs=26.0
Q ss_pred CcccccccccC-----CCCcccc---cc---CC-C-CCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 023175 1 MALRTCQNFAS-----PFVSSIK---LT---KK-P-IRNFKAPVKNCQSDPHESRKLVLQVKERL 52 (286)
Q Consensus 1 ~~~~~~~~~~~-----~~~~~~~---~~---~~-p-~~~~~~~~~e~~~~~e~~~~~i~~lr~~l 52 (286)
||+|+||-|.- +.+.+.. |. ++ | .+......-+.+||+++ .++.|+++..
T Consensus 1 m~~ra~G~iifr~~~~~~~~n~~~e~LL~~r~~~~~~W~lPgG~ve~gEt~~~--aa~REl~EEt 63 (155)
T 3u53_A 1 MALRACGLIIFRRCLIPKVDNNAIEFLLLQASDGIHHWTPPKGHVEPGEDDLE--TALRETQEEA 63 (155)
T ss_dssp ---CEEEEEEEEECCCSSSSSCSEEEEEEEESSSSCCEECSEEECCSSCCHHH--HHHHHHHHHH
T ss_pred CCceEeEEEEEccccccceeCCCcEEEEEEecCCCCCEECCeeeccCCCCHHH--HHHHHHHHHH
Confidence 89999998864 2222221 11 11 1 23444555678899866 5666666644
No 34
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=48.68 E-value=27 Score=22.11 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=25.1
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 023175 66 RDDEDMILWFLKDRKFSIEESLAKLTKAI 94 (286)
Q Consensus 66 ~~~d~~LlRFLra~~~dv~~A~~~l~~~~ 94 (286)
..+-.+-.++|..++||.++|.+.+.+..
T Consensus 19 gmn~~~s~~cL~~~~Wd~~~A~~~F~~l~ 47 (59)
T 1oai_A 19 GMNLEWSQKCLQDNNWDYTRSAQAFTHLK 47 (59)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 35789999999999999999999887654
No 35
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=48.29 E-value=22 Score=25.70 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHHHH
Q 023175 66 RDDEDMILWFLKDRKFSIEESLAKLTK 92 (286)
Q Consensus 66 ~~~d~~LlRFLra~~~dv~~A~~~l~~ 92 (286)
..++...++-|+++++|+++|++.|.+
T Consensus 78 F~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 78 IQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 446678999999999999999998864
No 36
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=48.04 E-value=27 Score=22.40 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=23.0
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 67 DDEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 67 ~~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
.++....+-|++++.|+++|++-|-.+
T Consensus 31 Fs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 31 YSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp CCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 468889999999999999999877544
No 37
>2l2l_A Transcriptional repressor P66-alpha; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=43.59 E-value=25 Score=20.41 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcC
Q 023175 37 DPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRK 80 (286)
Q Consensus 37 ~~e~~~~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~ 80 (286)
+|+++++.|.+||+.|..+. ..-.||+=||...
T Consensus 2 s~~ere~~i~~LreeLR~EE-----------aKLvLLKKlrqSQ 34 (43)
T 2l2l_A 2 SPEERERMIKQLKEELRLEE-----------AKLVLLKKLRQSQ 34 (43)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 68899999999999997653 2456677666554
No 38
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=43.37 E-value=34 Score=23.42 Aligned_cols=27 Identities=11% Similarity=-0.112 Sum_probs=23.6
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 67 DDEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 67 ~~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
.+.....+-|+++++|+++|.+.|-.+
T Consensus 41 F~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 41 FDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 367889999999999999999988765
No 39
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.86 E-value=44 Score=20.83 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=24.5
Q ss_pred CCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 65 GRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 65 ~~~~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
...|...=.+-|+.+++|+++|+..|-+.
T Consensus 20 GF~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 20 GFCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp TCCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 35688889999999999999998887653
No 40
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=40.83 E-value=17 Score=22.69 Aligned_cols=27 Identities=15% Similarity=-0.009 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHHHH
Q 023175 66 RDDEDMILWFLKDRKFSIEESLAKLTK 92 (286)
Q Consensus 66 ~~~d~~LlRFLra~~~dv~~A~~~l~~ 92 (286)
..|...+-.-|++++++++.|+..+-+
T Consensus 25 ~lD~evI~~Vl~a~~G~~~~~IdaLLq 51 (54)
T 1p3q_Q 25 DMDPSLIEDVCIAAASRIGPCVDALLS 51 (54)
T ss_dssp TSCHHHHHHHHHHSCC--CGGGC----
T ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 568899999999999999998877644
No 41
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.77 E-value=35 Score=21.76 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=21.9
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 68 DEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 68 ~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
+.....+-|+++++|+++|.+.|-.+
T Consensus 22 ~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 22 SRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 46778899999999999999888765
No 42
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.90 E-value=52 Score=20.39 Aligned_cols=28 Identities=18% Similarity=-0.129 Sum_probs=24.6
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHHH
Q 023175 67 DDEDMILWFLKDRKFSIEESLAKLTKAI 94 (286)
Q Consensus 67 ~~d~~LlRFLra~~~dv~~A~~~l~~~~ 94 (286)
.+.....|-|...++|++.|...|+++.
T Consensus 21 F~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 21 YSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 4678899999999999999999998763
No 43
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=37.63 E-value=64 Score=19.89 Aligned_cols=28 Identities=11% Similarity=-0.053 Sum_probs=24.8
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 66 RDDEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 66 ~~~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
..+..-.++-|+..++|++-|...|.++
T Consensus 22 GFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 22 GYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp TCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 3577889999999999999999998876
No 44
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.54 E-value=55 Score=21.59 Aligned_cols=39 Identities=10% Similarity=0.317 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 43 KLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 43 ~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
+.+.+||+.+ |++| |..+-.+++.++.|.++..+.|.+-
T Consensus 12 qvfheLkQrF----PEvP--------d~VVsqc~~qN~~Nl~aC~~~L~qE 50 (75)
T 2dae_A 12 QVLHDLRQKF----PEVP--------EVVVSRCMLQNNNNLDACCAVLSQE 50 (75)
T ss_dssp HHHHHHHHHS----SSSC--------HHHHHHHHTTTTSCSHHHHHHHHHH
T ss_pred HHHHHHHHhc----ccCc--------HHHHHHHHHHhccCHHHHHHHHHHh
Confidence 5667777755 4454 7899999999999999999988654
No 45
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=36.90 E-value=70 Score=23.27 Aligned_cols=83 Identities=12% Similarity=0.027 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCcccEEEEEeCCCCCCCCCCHHHHHHHHHHHhhhcccccccEEEEeCCcchHHHHHH
Q 023175 145 HDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQL 224 (286)
Q Consensus 145 ~~~~~~~r~~~~~lE~~~~~~~~~~~g~~vIiD~~g~s~~~~~~~~~k~~~~~lq~~yP~rl~~i~iiN~P~~f~~~w~l 224 (286)
.+.+++.. +.-.+|..+... ....+.+++|+++ +...++..+-.-++.-..+. ..+.++=||-.+.|...+-++
T Consensus 30 lt~~d~~~-l~~~l~~~l~~~--~~~~i~ll~~~~~--f~G~~~~a~~~d~k~~~~h~-~~~~RiAvV~d~~W~~~~~~~ 103 (126)
T 2q3l_A 30 LTHEDYEQ-MTPLLESALAGI--KTPEIVALIDITE--LDGLSLHAAWDDLKLGLKHG-KEFKRVAIIGQGELQEWATRV 103 (126)
T ss_dssp ECHHHHHH-HHHHHHHHTTTC--CSSCEEEEEEEEE--EEEECHHHHHHHHHHHHHHG-GGEEEEEEECCSHHHHHHHHH
T ss_pred ECHHHHHH-HHHHHHHHHHhC--CCceEEEEEEecC--CCCCCHHHHHHHHHhhhhHH-hcCCEEEEEcChHHHHHHHHH
Confidence 56778876 566666654432 1223777777653 33344544444344333444 778999999999999999999
Q ss_pred hhhcccccc
Q 023175 225 TKPLLKSYA 233 (286)
Q Consensus 225 vkpfL~~~t 233 (286)
.++|++..+
T Consensus 104 ~~~~~~~ev 112 (126)
T 2q3l_A 104 ANWFTPGEF 112 (126)
T ss_dssp HHHHCSSEE
T ss_pred HhhccCCce
Confidence 999987754
No 46
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=34.71 E-value=41 Score=22.27 Aligned_cols=26 Identities=23% Similarity=0.033 Sum_probs=21.8
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHH
Q 023175 67 DDEDMILWFLKDRKFSIEESLAKLTK 92 (286)
Q Consensus 67 ~~d~~LlRFLra~~~dv~~A~~~l~~ 92 (286)
.+.....+-|+++++|+++|++.|-.
T Consensus 41 F~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 41 FAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35777899999999999999987754
No 47
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=31.32 E-value=1.7e+02 Score=22.08 Aligned_cols=63 Identities=6% Similarity=0.100 Sum_probs=42.7
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Q 023175 31 VKNCQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQE 99 (286)
Q Consensus 31 ~~e~~~~~e~~~~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~~~wR~~ 99 (286)
...+++|++++ +.|.+|++......... ......-+...+.+.+||-.++...+.+...-+.+
T Consensus 41 ~~~L~LTdeQk-qqir~L~~~~r~~~~~~-----~~~~r~~l~~Li~ad~fDeaa~ral~~~~~~~~~e 103 (145)
T 3itf_A 41 FDGISLTEHQR-QQMRDLMQQARHEQPPV-----NVSELETMHRLVTAENFDENAVRAQAEKMANEQIA 103 (145)
T ss_dssp TTTCCCCHHHH-HHHHHHHHHHHHHSCCC-----CHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHH-HHHHHHHHHHHHHhhhc-----cHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH
Confidence 35799998775 57788877766543221 11223456777789999999888888877665543
No 48
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.08 E-value=71 Score=20.40 Aligned_cols=27 Identities=15% Similarity=-0.075 Sum_probs=21.6
Q ss_pred CCHHHHHHHHhhc-CCCHHHHHHHHHHH
Q 023175 67 DDEDMILWFLKDR-KFSIEESLAKLTKA 93 (286)
Q Consensus 67 ~~d~~LlRFLra~-~~dv~~A~~~l~~~ 93 (286)
.+.....+-|+++ ++|++.|++-|-.+
T Consensus 21 F~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 21 FPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 4567888899999 68999998877655
No 49
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=29.45 E-value=53 Score=19.56 Aligned_cols=25 Identities=8% Similarity=-0.126 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHhhcCCCHHHHHHHH
Q 023175 66 RDDEDMILWFLKDRKFSIEESLAKL 90 (286)
Q Consensus 66 ~~~d~~LlRFLra~~~dv~~A~~~l 90 (286)
..+....++-|.+|++|++.|...|
T Consensus 15 GF~~~~a~~Al~a~~~n~e~A~~~L 39 (47)
T 1dv0_A 15 GFPESLVIQAYFACEKNENLAANFL 39 (47)
T ss_dssp TCCHHHHHHHHTTTTSCHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3577888999999999999998765
No 50
>3ct6_A PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DHAM; mixed alpha beta structure, glycerol metabolism; 1.10A {Lactococcus lactis} SCOP: c.54.1.2 PDB: 3cr3_C*
Probab=28.60 E-value=43 Score=24.83 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=26.5
Q ss_pred ccEEEEEeCCCCCCCCCCHHHHHHHHHHHhhhcccccccEEEEeCCcchHHHHHHh
Q 023175 170 EQILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLT 225 (286)
Q Consensus 170 ~g~~vIiD~~g~s~~~~~~~~~k~~~~~lq~~yP~rl~~i~iiN~P~~f~~~w~lv 225 (286)
+|++++.|+ |-+..|. .+.+.. .. .++.++|+|.+...+-..+
T Consensus 59 dgVlvltDL-Ggsp~N~-------~~al~~-~~----~~v~viNlPmvega~~aa~ 101 (131)
T 3ct6_A 59 DNLLTFFDL-GSARMNL-------DLVSEM-TD----KELTIFNVPLIEGAYTASA 101 (131)
T ss_dssp SEEEEEESS-GGGHHHH-------HHHHHT-CS----SEEEECCSCHHHHHHHHHH
T ss_pred CCEEEEEeC-CCChHHH-------HHHHHh-cC----CCEEEEEhhHHHHHHHHHH
Confidence 799999999 6553221 111111 11 3788889999976666543
No 51
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=28.41 E-value=36 Score=22.01 Aligned_cols=38 Identities=11% Similarity=0.011 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 43 KLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 43 ~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
+.|.+||+.-.. .-...-+-|..+++|+++|...|++-
T Consensus 11 ~~Vk~LRe~TGa-------------g~~dcKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 11 ELLMKLRRKTGY-------------SFVNCKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHHHCC-------------CHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-------------CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 467888885421 22347788999999999999999865
No 52
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.66 E-value=73 Score=21.61 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=22.0
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 68 DEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 68 ~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
+.....+-|+++++|++.|.+.|-.+
T Consensus 42 ~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 42 PENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 56778899999999999999887654
No 53
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=27.37 E-value=2.2e+02 Score=22.18 Aligned_cols=66 Identities=6% Similarity=-0.072 Sum_probs=41.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHcC
Q 023175 33 NCQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFR 101 (286)
Q Consensus 33 e~~~~~e~~~~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~~~wR~~~~ 101 (286)
.+++|||++ +.++++++....+...+.. .-......|..-+.+.++|.+++.+..++..+.|.+..
T Consensus 65 ~LnLT~EQq-~ql~~I~~e~r~~~~~Lr~--ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 65 GSPLTTEQQ-ATAQKIYDDYYTQTSALRQ--QLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLD 130 (175)
T ss_dssp ---CCHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 389999776 5777777665544221100 00112344666777889999999999999999987644
No 54
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.34 E-value=63 Score=23.05 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=20.2
Q ss_pred CCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 67 DDEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 67 ~~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
.+......-|..++||+++|...|..-
T Consensus 52 ~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 52 KNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp CCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 456677888888888888888777543
No 55
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=26.67 E-value=1.6e+02 Score=22.95 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=31.8
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHH
Q 023175 33 NCQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLT 91 (286)
Q Consensus 33 e~~~~~e~~~~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~ 91 (286)
....|||++ ++|+.|.+ + ..+....++-+.+|++|.+.|...|-
T Consensus 123 ~i~~tpee~-eaI~rL~~--------m------GF~r~~viqA~~ac~knee~Aan~L~ 166 (171)
T 2qsf_X 123 QVDYTPEDD-QAISRLCE--------L------GFERDLVIQVYFACDKNEEAAANILF 166 (171)
T ss_dssp CCCCCHHHH-HHHHHHHT--------T------TCCHHHHHHHHHHTTTCHHHHHHHHT
T ss_pred cCCCCccHH-HHHHHHHH--------c------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 457788775 46654432 1 24678888999999999999988764
No 56
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.59 E-value=78 Score=20.22 Aligned_cols=25 Identities=12% Similarity=-0.108 Sum_probs=20.9
Q ss_pred CHHHHHHHHhhcCC-CHHHHHHHHHH
Q 023175 68 DEDMILWFLKDRKF-SIEESLAKLTK 92 (286)
Q Consensus 68 ~d~~LlRFLra~~~-dv~~A~~~l~~ 92 (286)
+.....+-|+++++ |++.|.+-|-.
T Consensus 32 ~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 32 PRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp CHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 56788999999998 99999887753
No 57
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=25.42 E-value=32 Score=29.30 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=22.7
Q ss_pred ccccEEEEeCCcchHHHHHHhhhccccc
Q 023175 205 RLGEVLFVEAPFVFKPFWQLTKPLLKSY 232 (286)
Q Consensus 205 rl~~i~iiN~P~~f~~~w~lvkpfL~~~ 232 (286)
.=..++|||+||-+.-..+-+-|+|.+.
T Consensus 236 ~gsGm~viNpP~~l~~~~~~~l~~l~~~ 263 (283)
T 2oo3_A 236 TGCGLWIINPPYTFPSEIKLVLETLTTY 263 (283)
T ss_dssp CEEEEEEESCCTTHHHHHHHHHHHHHHH
T ss_pred CceeEEEECCchhHHHHHHHHHHHHHHH
Confidence 3347999999999998888888887664
No 58
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=24.59 E-value=1e+02 Score=24.33 Aligned_cols=102 Identities=18% Similarity=0.262 Sum_probs=53.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCCCCC-CCC-----------CCCCHHH----HHHHHhhc-CCCHHHHHHHHHHHHH
Q 023175 33 NCQSDPHESRKLVLQVKERLEKDYNSLPV-GKN-----------GRDDEDM----ILWFLKDR-KFSIEESLAKLTKAIK 95 (286)
Q Consensus 33 e~~~~~e~~~~~i~~lr~~l~~~~~~lp~-~~~-----------~~~~d~~----LlRFLra~-~~dv~~A~~~l~~~~~ 95 (286)
.++.++++. ..+++.++.+++-.-.+.. |.. ...+..- ++..|... .-+..+..+.+-...+
T Consensus 64 ~l~ls~~e~-~~l~~~~~~l~~~Gf~~e~~g~~~~~v~~vP~~l~~~~~~~~l~ell~~l~~~~~~~~~~~~~~~~~~~A 142 (197)
T 3kdg_A 64 TFHYSTNEA-LIIEQHKQELESVGVFLESFGSNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSKNIDIKKLREEAAIMMS 142 (197)
T ss_dssp EEECCTTHH-HHHHHTHHHHHHTTCCCEECSTTEEEEEEEETTSCTTCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EEecCHHHH-HHHHHHHHHHHhCCCEEEECCCCEEEEEecCcccccccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 345666554 5778888888776544321 211 1122222 34444433 2345555555555555
Q ss_pred HHHHcCC-CCCChhhhHHHHhcCceeeccCCCCCCCcEEEE
Q 023175 96 WRQEFRV-SELNEDSVRGIAESGKAYVHDFLDINERPVLIV 135 (286)
Q Consensus 96 wR~~~~~-~~l~~~~~~~~l~~~~~~~~g~~D~~Grpv~~~ 135 (286)
.|..... +.++.++....++.-..+-.++...+|||+++-
T Consensus 143 Cr~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~ 183 (197)
T 3kdg_A 143 CKGSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIH 183 (197)
T ss_dssp HCC----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEE
T ss_pred hHhhccCCCCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEE
Confidence 5555554 568877766655433333345567889999865
No 59
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.98 E-value=97 Score=20.62 Aligned_cols=39 Identities=28% Similarity=0.344 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHH
Q 023175 42 RKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTK 92 (286)
Q Consensus 42 ~~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~ 92 (286)
+..+.+||+.- ...|-.+|.--|.+.++|+..|+..|..
T Consensus 25 q~lLnQLrEIT------------GiqD~~~L~~ALkas~Gdl~~AV~~LT~ 63 (80)
T 1vdl_A 25 QTFLNQLREIT------------GINDAQILQQALKDSNGNLELAVAFLTA 63 (80)
T ss_dssp HHHHHHHHHHS------------CCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHh------------CCCcHHHHHHHHHhccCCHHHHHHHHhc
Confidence 34677777632 2446789999999999999999988753
No 60
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.48 E-value=1.1e+02 Score=17.82 Aligned_cols=23 Identities=13% Similarity=0.160 Sum_probs=18.0
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHHH
Q 023175 68 DEDMILWFLKDRKFSIEESLAKLT 91 (286)
Q Consensus 68 ~d~~LlRFLra~~~dv~~A~~~l~ 91 (286)
+.....+-|++++ |++.|.+.|-
T Consensus 22 ~~~~a~~AL~~~~-n~e~A~~~L~ 44 (47)
T 2ekk_A 22 TREHAMEALLNTS-TMEQATEYLL 44 (47)
T ss_dssp CHHHHHHHHHHSC-SHHHHHHHHH
T ss_pred CHHHHHHHHHHcC-CHHHHHHHHH
Confidence 4567788888886 8998888764
No 61
>1ju8_A Leginsulin, albumin 1; T-knot, hormone/growth factor complex; NMR {Synthetic} SCOP: g.3.6.4
Probab=21.40 E-value=38 Score=19.12 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=11.3
Q ss_pred ccccccCCCCcccc
Q 023175 5 TCQNFASPFVSSIK 18 (286)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (286)
.||+|-|||-.|..
T Consensus 6 vCSPFemPPC~s~~ 19 (37)
T 1ju8_A 6 ACSPFEVPPCRSRD 19 (37)
T ss_dssp EECSSSSSSSSCTT
T ss_pred ccCCcccCCCCCCC
Confidence 48999999987754
No 62
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=21.38 E-value=86 Score=17.36 Aligned_cols=17 Identities=0% Similarity=0.131 Sum_probs=14.3
Q ss_pred CCCChHHHHHHHHHHHH
Q 023175 34 CQSDPHESRKLVLQVKE 50 (286)
Q Consensus 34 ~~~~~e~~~~~i~~lr~ 50 (286)
.++|.|++..-|.++|+
T Consensus 16 ~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 16 PNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHhHHHHHhc
Confidence 47888999989988886
No 63
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.37 E-value=81 Score=21.50 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=21.1
Q ss_pred CHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 68 DEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 68 ~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
+.....+-|+++++|++.|.+.|-.+
T Consensus 34 ~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 34 PREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 56778888899999999998877543
No 64
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.66 E-value=1.3e+02 Score=19.81 Aligned_cols=26 Identities=8% Similarity=-0.144 Sum_probs=21.0
Q ss_pred CHHHHHHHHhhcCC-CHHHHHHHHHHH
Q 023175 68 DEDMILWFLKDRKF-SIEESLAKLTKA 93 (286)
Q Consensus 68 ~d~~LlRFLra~~~-dv~~A~~~l~~~ 93 (286)
+.....+-|+++++ |++.|.+.|-.+
T Consensus 22 ~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 22 PMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp CHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 56778899999985 899998877655
No 65
>3jqo_C TRAN protein; helical outer membrane TM, outer membrane protein complex, plasmid, transport protein; HET: LDA; 2.60A {Escherichia coli} PDB: 2ofq_B
Probab=20.25 E-value=54 Score=18.11 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=16.4
Q ss_pred cccccCCCCccccccCCCCCCCCCC
Q 023175 6 CQNFASPFVSSIKLTKKPIRNFKAP 30 (286)
Q Consensus 6 ~~~~~~~~~~~~~~~~~p~~~~~~~ 30 (286)
|+|-++|++.+.-.---|++.+.++
T Consensus 1 Cas~~kp~pepd~~n~VpvNKTiP~ 25 (34)
T 3jqo_C 1 CSSGHKPPPEPDWSNTVPVNKTIPV 25 (34)
T ss_dssp --CCCCCCCCCCCSSEEESCSSCCC
T ss_pred CCCCCCCCCCCccccccccccccCH
Confidence 8889998887776555677776544
No 66
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=25.57 E-value=22 Score=26.23 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q 023175 40 ESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKA 93 (286)
Q Consensus 40 ~~~~~i~~lr~~l~~~~~~lp~~~~~~~~d~~LlRFLra~~~dv~~A~~~l~~~ 93 (286)
..+..|.+||+.-.. .|-.+|..-|.++++|+..|+..|..-
T Consensus 17 ~~Q~lLNQLrEITGI------------qD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 17 QGQMLLNQLREITGI------------QDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 444577888875432 245778899999999999999988653
Done!