Query 023176
Match_columns 286
No_of_seqs 242 out of 2071
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023176.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023176hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1039 Predicted E3 ubiquitin 100.0 2.5E-37 5.4E-42 287.7 8.8 242 25-286 1-248 (344)
2 PHA03096 p28-like protein; Pro 100.0 5E-30 1.1E-34 234.2 5.9 135 141-286 130-274 (284)
3 PHA02926 zinc finger-like prot 99.8 1.3E-20 2.7E-25 163.9 5.6 77 187-268 163-239 (242)
4 PHA02929 N1R/p28-like protein; 99.5 3.1E-14 6.6E-19 127.3 5.4 68 189-268 169-236 (238)
5 PF15227 zf-C3HC4_4: zinc fing 99.2 4.1E-12 8.9E-17 84.0 3.0 42 197-254 1-42 (42)
6 KOG1040 Polyadenylation factor 99.2 8.1E-12 1.8E-16 116.3 2.9 54 3-56 76-130 (325)
7 PF13639 zf-RING_2: Ring finge 99.1 2.2E-11 4.8E-16 81.1 2.3 44 195-255 1-44 (44)
8 PLN03208 E3 ubiquitin-protein 99.0 4.4E-10 9.4E-15 97.1 4.4 64 187-259 11-79 (193)
9 PF13920 zf-C3HC4_3: Zinc fing 99.0 4.7E-10 1E-14 76.7 3.1 49 193-261 1-50 (50)
10 PF13923 zf-C3HC4_2: Zinc fing 98.9 5.5E-10 1.2E-14 72.5 2.7 39 197-254 1-39 (39)
11 KOG2494 C3H1-type Zn-finger pr 98.9 2.3E-09 5E-14 98.5 7.4 53 5-58 38-96 (331)
12 KOG1677 CCCH-type Zn-finger pr 98.9 2.3E-09 4.9E-14 100.7 5.8 95 5-155 87-202 (332)
13 PF00097 zf-C3HC4: Zinc finger 98.9 1.7E-09 3.6E-14 70.7 3.1 41 197-254 1-41 (41)
14 KOG1492 C3H1-type Zn-finger pr 98.8 1.1E-09 2.5E-14 96.0 2.1 49 5-55 207-256 (377)
15 PF12678 zf-rbx1: RING-H2 zinc 98.8 4.3E-09 9.4E-14 77.8 3.6 51 193-255 18-73 (73)
16 cd00162 RING RING-finger (Real 98.8 5.4E-09 1.2E-13 68.3 3.6 44 196-257 1-44 (45)
17 TIGR00599 rad18 DNA repair pro 98.8 6.8E-09 1.5E-13 99.3 5.5 69 191-284 23-91 (397)
18 KOG0317 Predicted E3 ubiquitin 98.8 3.6E-09 7.7E-14 95.8 2.8 47 192-258 237-283 (293)
19 KOG0823 Predicted E3 ubiquitin 98.7 6.1E-09 1.3E-13 91.7 3.2 56 191-263 44-101 (230)
20 smart00504 Ubox Modified RING 98.7 1.5E-08 3.3E-13 72.0 4.4 46 194-259 1-46 (63)
21 KOG2164 Predicted E3 ubiquitin 98.7 1.3E-08 2.7E-13 98.5 4.8 72 193-282 185-258 (513)
22 KOG1492 C3H1-type Zn-finger pr 98.7 7.8E-09 1.7E-13 90.8 3.0 85 3-159 232-317 (377)
23 KOG1677 CCCH-type Zn-finger pr 98.7 7.5E-08 1.6E-12 90.4 9.7 59 3-61 131-207 (332)
24 KOG0320 Predicted E3 ubiquitin 98.7 1E-08 2.2E-13 86.9 2.5 49 192-258 129-177 (187)
25 COG5152 Uncharacterized conser 98.6 1.4E-08 3.1E-13 87.3 2.3 111 131-280 141-256 (259)
26 PF12861 zf-Apc11: Anaphase-pr 98.6 3.2E-08 6.9E-13 74.7 3.3 59 192-260 19-83 (85)
27 COG5084 YTH1 Cleavage and poly 98.6 6.7E-08 1.5E-12 88.4 5.4 55 3-57 103-160 (285)
28 PF14634 zf-RING_5: zinc-RING 98.5 6.2E-08 1.3E-12 64.5 3.0 44 196-256 1-44 (44)
29 KOG0287 Postreplication repair 98.5 6.8E-08 1.5E-12 89.1 3.1 65 194-283 23-87 (442)
30 PF04564 U-box: U-box domain; 98.5 1.7E-07 3.6E-12 69.2 4.2 68 193-284 3-70 (73)
31 smart00184 RING Ring finger. E 98.4 1.8E-07 3.8E-12 58.9 3.1 39 197-254 1-39 (39)
32 COG5243 HRD1 HRD ubiquitin lig 98.4 1.7E-07 3.7E-12 87.5 3.6 58 191-260 284-346 (491)
33 PF13445 zf-RING_UBOX: RING-ty 98.4 2.2E-07 4.9E-12 61.5 2.3 35 197-237 1-35 (43)
34 KOG2177 Predicted E3 ubiquitin 98.3 4E-07 8.7E-12 81.7 4.4 68 190-284 9-76 (386)
35 KOG4628 Predicted E3 ubiquitin 98.3 2.9E-07 6.4E-12 86.3 3.2 52 195-262 230-281 (348)
36 COG5574 PEX10 RING-finger-cont 98.3 2.5E-07 5.4E-12 83.0 2.5 48 192-258 213-261 (271)
37 COG5540 RING-finger-containing 98.3 4E-07 8.7E-12 83.0 3.8 55 188-258 317-371 (374)
38 PF14835 zf-RING_6: zf-RING of 98.3 2.7E-07 5.8E-12 65.8 0.9 44 194-258 7-50 (65)
39 TIGR00570 cdk7 CDK-activating 98.3 1.3E-06 2.8E-11 80.9 5.6 53 193-259 2-54 (309)
40 KOG1040 Polyadenylation factor 98.3 6.7E-07 1.5E-11 83.6 3.7 51 5-55 46-100 (325)
41 KOG1763 Uncharacterized conser 98.2 1.7E-07 3.6E-12 85.0 -0.7 57 3-59 91-194 (343)
42 PF00642 zf-CCCH: Zinc finger 98.2 2.6E-07 5.5E-12 55.2 0.1 24 3-26 2-26 (27)
43 KOG4172 Predicted E3 ubiquitin 98.1 5.3E-07 1.1E-11 61.9 -0.2 51 192-262 5-57 (62)
44 smart00356 ZnF_C3H1 zinc finge 98.1 2E-06 4.3E-11 50.8 2.1 24 3-26 3-26 (27)
45 KOG0802 E3 ubiquitin ligase [P 98.1 1.6E-06 3.6E-11 86.8 2.7 52 190-256 287-338 (543)
46 KOG1813 Predicted E3 ubiquitin 98.0 1.4E-06 3E-11 79.3 1.1 102 131-268 186-291 (313)
47 COG5432 RAD18 RING-finger-cont 98.0 3.3E-06 7.2E-11 76.7 3.4 65 194-283 25-89 (391)
48 PF00642 zf-CCCH: Zinc finger 98.0 3E-06 6.6E-11 50.5 1.1 25 130-154 2-27 (27)
49 KOG4791 Uncharacterized conser 97.9 1.1E-05 2.5E-10 77.6 4.2 25 132-156 119-143 (667)
50 COG5194 APC11 Component of SCF 97.8 1.2E-05 2.6E-10 59.6 2.5 55 195-261 21-83 (88)
51 KOG2494 C3H1-type Zn-finger pr 97.8 7.2E-06 1.6E-10 75.7 1.3 25 32-56 37-62 (331)
52 smart00356 ZnF_C3H1 zinc finge 97.8 1.8E-05 3.8E-10 46.6 2.4 25 31-55 3-27 (27)
53 PF11793 FANCL_C: FANCL C-term 97.8 6.3E-06 1.4E-10 60.4 0.3 65 194-259 2-66 (70)
54 KOG4791 Uncharacterized conser 97.8 6.3E-06 1.4E-10 79.3 0.3 52 5-57 4-56 (667)
55 KOG0311 Predicted E3 ubiquitin 97.7 5.1E-06 1.1E-10 77.4 -0.8 50 192-259 41-90 (381)
56 COG5063 CTH1 CCCH-type Zn-fing 97.5 0.0001 2.2E-09 67.5 4.9 55 5-59 231-302 (351)
57 KOG0978 E3 ubiquitin ligase in 97.5 3.7E-05 8.1E-10 78.0 1.1 47 194-259 643-689 (698)
58 KOG0804 Cytoplasmic Zn-finger 97.4 5.2E-05 1.1E-09 72.7 1.1 51 191-259 172-222 (493)
59 KOG4159 Predicted E3 ubiquitin 97.4 0.00011 2.3E-09 70.8 2.9 73 192-285 82-155 (398)
60 KOG0824 Predicted E3 ubiquitin 97.4 8.6E-05 1.9E-09 68.0 2.1 50 191-259 4-53 (324)
61 COG5252 Uncharacterized conser 97.3 2.8E-05 6E-10 68.8 -1.3 56 3-58 84-178 (299)
62 COG5084 YTH1 Cleavage and poly 97.3 0.00048 1E-08 63.3 6.7 54 4-57 134-191 (285)
63 KOG1595 CCCH-type Zn-finger pr 97.3 0.00091 2E-08 65.7 8.3 57 4-63 236-299 (528)
64 KOG2660 Locus-specific chromos 97.1 0.0002 4.3E-09 66.4 1.8 59 189-266 10-68 (331)
65 KOG0825 PHD Zn-finger protein 97.0 0.00025 5.4E-09 72.1 1.5 70 194-280 123-199 (1134)
66 PF11789 zf-Nse: Zinc-finger o 97.0 0.00046 9.9E-09 48.5 2.1 47 190-253 7-53 (57)
67 KOG1595 CCCH-type Zn-finger pr 97.0 0.00061 1.3E-08 66.9 3.6 52 3-57 200-261 (528)
68 KOG2930 SCF ubiquitin ligase, 96.9 0.00045 9.8E-09 53.7 2.0 31 219-260 79-109 (114)
69 KOG0827 Predicted E3 ubiquitin 96.9 0.0004 8.7E-09 65.7 2.0 51 194-257 4-54 (465)
70 KOG1493 Anaphase-promoting com 96.9 0.00021 4.6E-09 52.6 -0.4 57 194-260 20-82 (84)
71 PF14608 zf-CCCH_2: Zinc finge 96.8 0.00078 1.7E-08 36.7 1.6 19 6-26 1-19 (19)
72 KOG4265 Predicted E3 ubiquitin 96.7 0.001 2.2E-08 62.5 2.8 49 192-260 288-337 (349)
73 KOG0297 TNF receptor-associate 96.7 0.00079 1.7E-08 65.0 1.8 49 191-259 18-67 (391)
74 COG5219 Uncharacterized conser 96.6 0.0014 3E-08 68.1 3.3 60 188-261 1463-1525(1525)
75 smart00744 RINGv The RING-vari 96.6 0.0021 4.5E-08 43.7 3.0 44 196-255 1-49 (49)
76 KOG0828 Predicted E3 ubiquitin 96.6 0.00091 2E-08 65.0 1.5 54 194-258 571-633 (636)
77 KOG1645 RING-finger-containing 96.6 0.0022 4.8E-08 61.1 3.9 53 194-259 4-56 (463)
78 KOG2185 Predicted RNA-processi 96.5 0.00093 2E-08 63.5 1.2 26 4-29 140-165 (486)
79 KOG2333 Uncharacterized conser 96.5 0.0011 2.4E-08 64.6 1.6 56 4-59 76-144 (614)
80 COG5222 Uncharacterized conser 96.5 0.0043 9.3E-08 57.0 5.2 45 195-257 275-319 (427)
81 PF14608 zf-CCCH_2: Zinc finge 96.5 0.0015 3.2E-08 35.6 1.3 19 133-153 1-19 (19)
82 COG5063 CTH1 CCCH-type Zn-fing 96.4 0.0049 1.1E-07 56.8 4.9 29 128-156 271-300 (351)
83 KOG2185 Predicted RNA-processi 96.2 0.0023 5E-08 61.0 1.9 25 32-56 140-164 (486)
84 KOG1941 Acetylcholine receptor 96.1 0.0053 1.1E-07 58.3 3.6 53 192-258 363-415 (518)
85 KOG2879 Predicted E3 ubiquitin 96.0 0.006 1.3E-07 55.5 3.2 55 191-262 236-290 (298)
86 KOG1428 Inhibitor of type V ad 95.8 0.0029 6.2E-08 68.2 0.5 84 170-262 3464-3547(3738)
87 KOG1785 Tyrosine kinase negati 95.8 0.0041 8.8E-08 59.2 1.4 47 195-259 370-416 (563)
88 KOG1952 Transcription factor N 95.6 0.013 2.8E-07 60.5 4.2 63 190-261 187-249 (950)
89 KOG1002 Nucleotide excision re 95.4 0.0063 1.4E-07 59.9 1.3 54 191-259 533-586 (791)
90 PF14570 zf-RING_4: RING/Ubox 94.8 0.028 6.1E-07 38.0 2.6 47 197-258 1-47 (48)
91 KOG1571 Predicted E3 ubiquitin 94.4 0.016 3.4E-07 54.7 1.1 49 192-263 303-351 (355)
92 COG5236 Uncharacterized conser 94.3 0.024 5.3E-07 53.2 1.9 59 186-262 53-111 (493)
93 KOG4275 Predicted E3 ubiquitin 94.1 0.0074 1.6E-07 55.3 -1.8 44 194-261 300-344 (350)
94 KOG1734 Predicted RING-contain 94.0 0.019 4.2E-07 52.1 0.6 57 192-259 222-281 (328)
95 KOG1814 Predicted E3 ubiquitin 93.8 0.034 7.3E-07 53.3 1.9 58 193-259 183-240 (445)
96 KOG1812 Predicted E3 ubiquitin 93.7 0.047 1E-06 52.7 2.7 59 194-263 146-205 (384)
97 PF04641 Rtf2: Rtf2 RING-finge 93.6 0.13 2.8E-06 47.0 5.3 52 191-259 110-161 (260)
98 KOG3799 Rab3 effector RIM1 and 93.5 0.063 1.4E-06 44.0 2.8 65 192-269 63-128 (169)
99 KOG2333 Uncharacterized conser 93.1 0.031 6.7E-07 54.8 0.5 25 32-56 76-103 (614)
100 KOG4692 Predicted E3 ubiquitin 93.1 0.099 2.2E-06 49.3 3.7 54 190-263 418-471 (489)
101 PF10650 zf-C3H1: Putative zin 93.1 0.054 1.2E-06 30.9 1.2 19 6-25 2-21 (23)
102 KOG2932 E3 ubiquitin ligase in 93.0 0.03 6.6E-07 51.8 0.2 34 214-260 102-135 (389)
103 COG5152 Uncharacterized conser 92.9 0.035 7.6E-07 48.3 0.5 26 32-57 141-167 (259)
104 PF10650 zf-C3H1: Putative zin 92.8 0.071 1.5E-06 30.4 1.5 22 33-55 1-23 (23)
105 PF05883 Baculo_RING: Baculovi 92.8 0.057 1.2E-06 44.3 1.6 39 192-236 24-68 (134)
106 PF07800 DUF1644: Protein of u 92.8 0.16 3.5E-06 42.8 4.3 13 247-259 79-91 (162)
107 KOG4739 Uncharacterized protei 92.7 0.035 7.6E-07 49.7 0.2 46 195-260 4-49 (233)
108 COG5252 Uncharacterized conser 92.6 0.045 9.7E-07 48.9 0.7 28 30-57 83-110 (299)
109 PF14447 Prok-RING_4: Prokaryo 92.1 0.073 1.6E-06 36.9 1.1 46 193-260 6-51 (55)
110 KOG4367 Predicted Zn-finger pr 92.0 0.071 1.5E-06 51.6 1.3 34 192-234 2-35 (699)
111 KOG1039 Predicted E3 ubiquitin 91.8 0.061 1.3E-06 51.0 0.6 24 5-28 9-32 (344)
112 PF10272 Tmpp129: Putative tra 91.6 0.32 6.9E-06 46.5 5.2 96 164-259 240-351 (358)
113 KOG4185 Predicted E3 ubiquitin 91.0 0.21 4.6E-06 46.1 3.4 54 194-260 3-56 (296)
114 KOG3039 Uncharacterized conser 91.0 0.19 4.1E-06 45.3 2.9 55 189-259 216-270 (303)
115 KOG3800 Predicted E3 ubiquitin 90.9 0.3 6.5E-06 45.0 4.1 50 196-259 2-51 (300)
116 KOG3970 Predicted E3 ubiquitin 90.3 0.78 1.7E-05 40.9 6.0 75 192-285 48-122 (299)
117 KOG3053 Uncharacterized conser 89.9 0.18 4E-06 45.6 1.9 76 191-274 17-97 (293)
118 PF14569 zf-UDP: Zinc-binding 89.8 0.41 8.8E-06 35.6 3.3 68 191-271 6-73 (80)
119 PF10367 Vps39_2: Vacuolar sor 89.6 0.15 3.2E-06 39.4 0.9 33 192-231 76-108 (109)
120 KOG1763 Uncharacterized conser 89.5 0.097 2.1E-06 48.2 -0.2 28 30-57 90-117 (343)
121 KOG1001 Helicase-like transcri 89.5 0.16 3.4E-06 52.5 1.2 46 195-259 455-500 (674)
122 KOG3702 Nuclear polyadenylated 89.1 0.78 1.7E-05 46.6 5.7 23 132-157 626-648 (681)
123 COG5220 TFB3 Cdk activating ki 87.2 0.2 4.3E-06 45.0 0.2 57 190-259 6-64 (314)
124 PHA02825 LAP/PHD finger-like p 86.3 0.95 2.1E-05 38.3 3.8 61 192-269 6-72 (162)
125 KOG1815 Predicted E3 ubiquitin 85.9 1.1 2.5E-05 43.9 4.8 61 191-262 67-129 (444)
126 KOG0153 Predicted RNA-binding 85.8 0.42 9.2E-06 45.1 1.6 29 127-155 157-185 (377)
127 COG5175 MOT2 Transcriptional r 85.8 0.87 1.9E-05 42.9 3.6 60 193-269 13-72 (480)
128 KOG4362 Transcriptional regula 84.5 0.56 1.2E-05 48.1 1.9 50 192-258 19-68 (684)
129 KOG1813 Predicted E3 ubiquitin 84.3 0.31 6.8E-06 45.0 0.1 26 32-57 186-212 (313)
130 PF12906 RINGv: RING-variant d 83.7 0.78 1.7E-05 30.7 1.8 42 197-254 1-47 (47)
131 KOG3002 Zn finger protein [Gen 81.3 1.6 3.4E-05 40.8 3.4 58 191-280 45-104 (299)
132 KOG0826 Predicted E3 ubiquitin 80.9 0.98 2.1E-05 42.4 1.9 44 192-254 298-341 (357)
133 PF02891 zf-MIZ: MIZ/SP-RING z 79.8 0.81 1.7E-05 31.1 0.8 47 195-256 3-49 (50)
134 KOG0298 DEAD box-containing he 79.6 0.72 1.6E-05 50.2 0.7 52 189-259 1148-1199(1394)
135 PF05290 Baculo_IE-1: Baculovi 79.4 3.5 7.5E-05 33.9 4.4 57 190-260 76-133 (140)
136 KOG4445 Uncharacterized conser 78.9 0.69 1.5E-05 42.9 0.3 56 192-259 113-186 (368)
137 PF04423 Rad50_zn_hook: Rad50 78.8 1.4 3.1E-05 30.1 1.8 25 250-285 22-46 (54)
138 KOG2034 Vacuolar sorting prote 78.7 2.4 5.2E-05 44.6 4.1 37 192-235 815-851 (911)
139 KOG1940 Zn-finger protein [Gen 78.4 1.6 3.4E-05 40.3 2.4 51 190-256 154-204 (276)
140 PHA02862 5L protein; Provision 77.1 0.8 1.7E-05 38.1 0.1 56 194-268 2-65 (156)
141 KOG0153 Predicted RNA-binding 76.2 1.2 2.6E-05 42.0 1.1 24 5-28 162-185 (377)
142 PF10571 UPF0547: Uncharacteri 74.2 1.9 4.1E-05 25.3 1.2 23 196-225 2-24 (26)
143 TIGR00622 ssl1 transcription f 73.3 2.6 5.7E-05 33.6 2.1 90 153-255 15-110 (112)
144 KOG0801 Predicted E3 ubiquitin 72.3 0.39 8.4E-06 40.7 -2.9 61 152-222 137-199 (205)
145 PF04710 Pellino: Pellino; In 72.0 1.2 2.7E-05 42.8 0.0 59 194-261 277-341 (416)
146 KOG0825 PHD Zn-finger protein 71.2 2.3 5E-05 44.3 1.7 61 190-259 92-154 (1134)
147 PF08746 zf-RING-like: RING-li 70.3 4.3 9.3E-05 26.6 2.3 40 197-254 1-43 (43)
148 PLN02189 cellulose synthase 69.2 4.8 0.0001 43.4 3.6 67 191-270 31-97 (1040)
149 KOG3899 Uncharacterized conser 67.7 3.2 7E-05 38.5 1.7 38 221-259 325-365 (381)
150 KOG3268 Predicted E3 ubiquitin 66.8 4.5 9.7E-05 34.9 2.3 64 194-259 165-228 (234)
151 KOG2807 RNA polymerase II tran 66.3 4 8.6E-05 38.4 2.0 85 153-255 290-374 (378)
152 PLN02638 cellulose synthase A 61.0 7.1 0.00015 42.4 3.0 68 191-271 14-81 (1079)
153 PLN02436 cellulose synthase A 60.9 8.6 0.00019 41.7 3.6 68 190-270 32-99 (1094)
154 KOG2114 Vacuolar assembly/sort 60.3 21 0.00046 37.7 6.2 44 194-259 840-883 (933)
155 PF03854 zf-P11: P-11 zinc fin 58.2 4.2 9.1E-05 27.4 0.5 33 216-259 14-46 (50)
156 KOG2202 U2 snRNP splicing fact 58.1 4.9 0.00011 36.5 1.1 25 3-27 151-175 (260)
157 KOG3161 Predicted E3 ubiquitin 57.8 4.5 9.8E-05 41.3 0.9 37 194-235 11-47 (861)
158 KOG1812 Predicted E3 ubiquitin 56.4 11 0.00025 36.3 3.4 85 148-237 261-345 (384)
159 PLN02400 cellulose synthase 54.4 7.6 0.00017 42.1 1.9 69 190-271 32-100 (1085)
160 KOG3579 Predicted E3 ubiquitin 53.5 7.3 0.00016 36.1 1.4 45 190-240 264-309 (352)
161 COG3809 Uncharacterized protei 51.6 13 0.00028 27.8 2.2 23 249-281 22-44 (88)
162 KOG1100 Predicted E3 ubiquitin 50.3 6.5 0.00014 34.8 0.6 39 197-259 161-200 (207)
163 KOG2202 U2 snRNP splicing fact 48.1 8.3 0.00018 35.1 0.9 28 128-155 149-176 (260)
164 PLN02915 cellulose synthase A 47.8 15 0.00034 39.7 3.0 66 193-271 14-79 (1044)
165 smart00647 IBR In Between Ring 44.6 15 0.00032 25.1 1.6 40 194-234 18-59 (64)
166 PF02318 FYVE_2: FYVE-type zin 43.8 4.2 9E-05 32.5 -1.5 64 193-270 53-116 (118)
167 PF07191 zinc-ribbons_6: zinc- 40.5 3 6.4E-05 30.5 -2.6 44 194-262 1-44 (70)
168 PF06844 DUF1244: Protein of u 39.9 18 0.00039 26.1 1.4 14 224-237 11-24 (68)
169 PF07975 C1_4: TFIIH C1-like d 38.9 16 0.00035 25.0 1.0 17 214-231 21-37 (51)
170 KOG3842 Adaptor protein Pellin 36.6 18 0.00038 34.1 1.2 58 195-262 291-355 (429)
171 PF10497 zf-4CXXC_R1: Zinc-fin 36.4 29 0.00063 27.2 2.3 36 222-259 37-72 (105)
172 KOG3702 Nuclear polyadenylated 35.0 37 0.0008 35.0 3.2 19 7-28 588-606 (681)
173 PLN02195 cellulose synthase A 34.4 43 0.00093 36.2 3.7 56 192-259 4-59 (977)
174 KOG0006 E3 ubiquitin-protein l 34.2 29 0.00062 32.8 2.1 49 208-259 329-408 (446)
175 KOG4185 Predicted E3 ubiquitin 31.0 15 0.00033 33.7 -0.2 53 193-257 206-265 (296)
176 PF10283 zf-CCHH: Zinc-finger 30.8 16 0.00034 21.5 -0.1 8 141-148 2-9 (26)
177 PF13913 zf-C2HC_2: zinc-finge 30.7 51 0.0011 18.8 2.1 22 154-179 3-24 (25)
178 KOG0309 Conserved WD40 repeat- 30.4 35 0.00075 35.9 2.2 40 192-238 1026-1065(1081)
179 KOG1356 Putative transcription 29.5 13 0.00028 39.2 -1.0 36 192-234 227-262 (889)
180 KOG3113 Uncharacterized conser 28.5 79 0.0017 29.0 3.9 48 194-259 111-158 (293)
181 PRK13130 H/ACA RNA-protein com 28.2 88 0.0019 21.8 3.3 35 248-282 17-51 (56)
182 PF10146 zf-C4H2: Zinc finger- 27.9 43 0.00094 30.1 2.2 28 225-263 196-223 (230)
183 KOG4451 Uncharacterized conser 25.6 48 0.001 29.9 1.9 28 225-263 251-278 (286)
184 KOG3039 Uncharacterized conser 24.4 62 0.0013 29.6 2.5 34 193-235 42-75 (303)
185 PF09297 zf-NADH-PPase: NADH p 23.7 12 0.00026 22.7 -1.6 29 222-257 2-30 (32)
186 PF01485 IBR: IBR domain; Int 23.4 13 0.00028 25.5 -1.7 39 195-234 19-59 (64)
187 PRK00418 DNA gyrase inhibitor; 21.7 64 0.0014 23.0 1.6 14 247-260 5-18 (62)
188 KOG4430 Topoisomerase I-bindin 21.3 33 0.0007 34.7 0.1 62 189-266 255-316 (553)
No 1
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-37 Score=287.68 Aligned_cols=242 Identities=29% Similarity=0.593 Sum_probs=176.6
Q ss_pred cCCCCCCCcccccccCCCCCCCCCcccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCC-CCCCCccccCCCCCCCCCCC
Q 023176 25 HDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKV-PGVMPELSALSRPFLPPNKT 103 (286)
Q Consensus 25 H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~pe~s~~~~p~~~~~~~ 103 (286)
||+......+|+||++|.|.||+.|+|.|+.+.........+..+.+..+. +.... -+...+ +.+
T Consensus 1 ~d~~~~~~tic~~~~~g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~~~~~---~~~~~~~~~~~~-----------~~~ 66 (344)
T KOG1039|consen 1 HDLSLSQETICKYYQKGNCKFGDLCRLSHSLPDEEFATLLTPTTSSAAAST---GLSQSLIWANAV-----------ADA 66 (344)
T ss_pred CccccccchhhhhcccccccccceeeeeccCchhhcccccccccccccccc---ccchhhcccchh-----------hcc
Confidence 676665558999999999999999999999985211111111100000000 00000 000000 001
Q ss_pred CCCCCCcCCCCCCccccCCCCCCCCCCccCChhhhcCCCCCCCCCcccCCCCCCCCCCccccCCChHHHHHHHHHHH-HH
Q 023176 104 AWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCE-KK 182 (286)
Q Consensus 104 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~lC~y~~~G~C~~Gd~C~y~Hg~~c~~c~~~~l~p~~~~~~~e~~~~~~-~~ 182 (286)
.+...........+.....+.. .+...++|+|...|.|.+|..|.++|++.|++|+...+||.+..+++.|++.|. ..
T Consensus 67 s~~~s~~~~~~~~~~~~s~~~~-~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~ 145 (344)
T KOG1039|consen 67 SATMSVSSRPVLTAIRASSSIS-EPSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCA 145 (344)
T ss_pred ccccchhcccchhhhhhhhccc-cccccccCccccccccccCCcccccccccccccccccccchhHHHHhhhhccccccc
Confidence 0000000000011111111111 344568899999999999999999999999999999999999999999999993 32
Q ss_pred H----HHHHHHhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 183 Q----KHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 183 ~----~~~~~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
+ +..++.+.+++.+|+||||.|++++ +++++|||||||.|.||+.||++|++..++ +.++++.||+||+.+
T Consensus 146 ~~~~~e~~~a~~~s~~k~CGICme~i~ek~-~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~----~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 146 LSSAMERSFALQKSSEKECGICMETINEKA-ASERRFGILPNCNHSFCLNCIRKWRQATQF----ESKTSKSCPFCRVPS 220 (344)
T ss_pred chHhhhhccCcCccccccceehhhhccccc-hhhhhcccCCCcchhhhhcHhHhhhhhhcc----ccccccCCCcccCcc
Confidence 2 4567889999999999999999998 899999999999999999999999988775 567889999999999
Q ss_pred cccccCceeeCCcHHHHHHHHHHHhhcC
Q 023176 259 YFVIPSVIWYYTPEEKQEIIDSYKSKLK 286 (286)
Q Consensus 259 ~~~~p~~~~~~~~~~k~~li~~yk~~~~ 286 (286)
.+|+|+.+||...++|+++|+.|++.++
T Consensus 221 ~~v~pS~~Wv~t~~~k~~li~e~~~~~s 248 (344)
T KOG1039|consen 221 SFVNPSSFWVETKEEKQKLIEEYEAEMS 248 (344)
T ss_pred ccccccceeeeecccccccHHHHHHHhh
Confidence 9999999999999999999999999864
No 2
>PHA03096 p28-like protein; Provisional
Probab=99.96 E-value=5e-30 Score=234.15 Aligned_cols=135 Identities=30% Similarity=0.538 Sum_probs=121.4
Q ss_pred CCCCCCCCcccCCCCCCCCCCccccCCChHHHHHHHHHHHHHHHHHHHHhccCcccccccccccccCccccccceeecCC
Q 023176 141 NCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSE 220 (286)
Q Consensus 141 ~C~~Gd~C~y~Hg~~c~~c~~~~l~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~ 220 (286)
.|.+|++|.|+||+.|++||+++|||.|++|+.+|.+.|+..+..+... .+|+||||.+++++ ..+++||+|++
T Consensus 130 ~c~~g~~c~~lHg~lC~~C~k~~Lhp~d~eqr~~h~k~c~~~~~~~~~~-----k~c~ic~e~~~~k~-~~~~~fgil~~ 203 (284)
T PHA03096 130 NCYKGKYCEYLHGDICDICEKYLLHPTDIKQRYNEQKTCLSYQLRLLLS-----KICGICLENIKAKY-IIKKYYGILSE 203 (284)
T ss_pred hcccccCcHHHHHHHHHhhcchhcCCcCHHHHHHHHHHHHHHHHHHHHH-----hhcccchhhhhhhc-ccccccccccc
Confidence 6899999999999999999999999999999999999999888644332 88999999999998 79999999999
Q ss_pred CCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc----------ccCceeeCCcHHHHHHHHHHHhhcC
Q 023176 221 CDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV----------IPSVIWYYTPEEKQEIIDSYKSKLK 286 (286)
Q Consensus 221 C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~----------~p~~~~~~~~~~k~~li~~yk~~~~ 286 (286)
|.|.||+.||+.|+..+. ...+.+.||.||..+.|| +|+.+|+.++++|+.|+.+||+.++
T Consensus 204 c~h~fc~~ci~~wr~~~~-----~~e~~~~c~~~~~~~~~v~~~~~~~~~~ips~~w~~~~~~K~~l~~~yk~~~~ 274 (284)
T PHA03096 204 IKHEFNIFCIKIWMTESL-----YKETEPENRRLNTVIVFIEKINEDLKNNIPSRYWIDDKYDKNLLSFRYKKMHI 274 (284)
T ss_pred CCcHHHHHHHHHHHHhhh-----hcccCccccchhhHHHHHhhcchhhhccCCchhhhcChHHHHHHHHHHHHhhc
Confidence 999999999999999865 245567777777777788 9999999999999999999998763
No 3
>PHA02926 zinc finger-like protein; Provisional
Probab=99.81 E-value=1.3e-20 Score=163.88 Aligned_cols=77 Identities=38% Similarity=0.764 Sum_probs=68.0
Q ss_pred HHHhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCce
Q 023176 187 EALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVI 266 (286)
Q Consensus 187 ~~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~ 266 (286)
...++++|.+|+||||.+++|+.+++|+||+|++|+|.||+.||++|++.++. .++.++||+||+.+.+|+|+.+
T Consensus 163 ~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~-----~~~~rsCPiCR~~f~~I~pSrf 237 (242)
T PHA02926 163 DVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRE-----TGASDNCPICRTRFRNITMSKF 237 (242)
T ss_pred HHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccc-----cCcCCcCCCCcceeeeeccccc
Confidence 35678999999999999999977899999999999999999999999987542 3456899999999999999998
Q ss_pred ee
Q 023176 267 WY 268 (286)
Q Consensus 267 ~~ 268 (286)
+.
T Consensus 238 ~~ 239 (242)
T PHA02926 238 YK 239 (242)
T ss_pred ee
Confidence 64
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.48 E-value=3.1e-14 Score=127.30 Aligned_cols=68 Identities=38% Similarity=0.907 Sum_probs=57.4
Q ss_pred HhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceee
Q 023176 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWY 268 (286)
Q Consensus 189 ~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~ 268 (286)
.+.+++.+|+||||.+.+++ ...++++++++|+|.||..||.+|++.+ .+||+||..+.+|+++.+|.
T Consensus 169 ~~~~~~~eC~ICle~~~~~~-~~~~~~~vl~~C~H~FC~~CI~~Wl~~~-----------~tCPlCR~~~~~v~~~r~~~ 236 (238)
T PHA02929 169 YNRSKDKECAICMEKVYDKE-IKNMYFGILSNCNHVFCIECIDIWKKEK-----------NTCPVCRTPFISVIKSRFFT 236 (238)
T ss_pred hcCCCCCCCccCCcccccCc-cccccceecCCCCCcccHHHHHHHHhcC-----------CCCCCCCCEeeEEeeeeeee
Confidence 35677899999999766543 3456688999999999999999999754 38999999999999999985
No 5
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.25 E-value=4.1e-12 Score=83.98 Aligned_cols=42 Identities=38% Similarity=0.935 Sum_probs=30.8
Q ss_pred ccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (286)
Q Consensus 197 C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C 254 (286)
|+||++ ++.+| ++| .|||+||.+||.+|++..+.. ...||+|
T Consensus 1 CpiC~~-~~~~P-------v~l-~CGH~FC~~Cl~~~~~~~~~~-------~~~CP~C 42 (42)
T PF15227_consen 1 CPICLD-LFKDP-------VSL-PCGHSFCRSCLERLWKEPSGS-------GFSCPEC 42 (42)
T ss_dssp ETTTTS-B-SSE-------EE--SSSSEEEHHHHHHHHCCSSSS-------T---SSS
T ss_pred CCccch-hhCCc-------ccc-CCcCHHHHHHHHHHHHccCCc-------CCCCcCC
Confidence 899999 78888 788 599999999999999765431 1589998
No 6
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.19 E-value=8.1e-12 Score=116.26 Aligned_cols=54 Identities=35% Similarity=0.882 Sum_probs=50.0
Q ss_pred CCccccccccccCCCCCCCCCccCCCCCCCccccccc-CCCCCCCCCcccCCCCC
Q 023176 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQ-KGFCSYGSRCRYEHVKP 56 (286)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~-~G~C~~G~~C~y~H~~~ 56 (286)
++++|+||++|.|++||.|.|+|+++..+.+.|.||. .|.|.+|..|.|.|..+
T Consensus 76 ~~~vcK~~l~glC~kgD~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~dp 130 (325)
T KOG1040|consen 76 GKVVCKHWLRGLCKKGDQCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGDP 130 (325)
T ss_pred CceeehhhhhhhhhccCcCcchhhhhhcccccccccccccccccccCCcccCCCh
Confidence 5789999999999999999999999777888898877 79999999999999997
No 7
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.13 E-value=2.2e-11 Score=81.09 Aligned_cols=44 Identities=39% Similarity=0.952 Sum_probs=34.1
Q ss_pred ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCC
Q 023176 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255 (286)
Q Consensus 195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR 255 (286)
.+|+||++.+... ..+..++ |+|.||.+||.+|.+.+ .+||+||
T Consensus 1 d~C~IC~~~~~~~-----~~~~~l~-C~H~fh~~Ci~~~~~~~-----------~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDG-----EKVVKLP-CGHVFHRSCIKEWLKRN-----------NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTT-----SCEEEET-TSEEEEHHHHHHHHHHS-----------SB-TTTH
T ss_pred CCCcCCChhhcCC-----CeEEEcc-CCCeeCHHHHHHHHHhC-----------CcCCccC
Confidence 3699999975432 3456775 99999999999999874 3999998
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.98 E-value=4.4e-10 Score=97.13 Aligned_cols=64 Identities=28% Similarity=0.722 Sum_probs=45.4
Q ss_pred HHHhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCC-----CCcCCCcCcccCCCcccc
Q 023176 187 EALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSG-----MDVNTALRACPICRKLSY 259 (286)
Q Consensus 187 ~~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~-----~~~~~~~~~CP~CR~~~~ 259 (286)
.+++..++.+|+||+| .+.+| +++ .|||.||..||.+|........ .+..+....||+||..+.
T Consensus 11 ~~~~~~~~~~CpICld-~~~dP-------VvT-~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 11 TLVDSGGDFDCNICLD-QVRDP-------VVT-LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred eeccCCCccCCccCCC-cCCCc-------EEc-CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 3456667899999999 56776 455 6999999999999986432100 001223469999999875
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.95 E-value=4.7e-10 Score=76.71 Aligned_cols=49 Identities=33% Similarity=0.788 Sum_probs=36.5
Q ss_pred CcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~ 261 (286)
++..|.||++. ..+ ..++ .|||. ||..|+.+|++.. ..||+||+.+..|
T Consensus 1 ~~~~C~iC~~~-~~~-------~~~~-pCgH~~~C~~C~~~~~~~~-----------~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 1 EDEECPICFEN-PRD-------VVLL-PCGHLCFCEECAERLLKRK-----------KKCPICRQPIESV 50 (50)
T ss_dssp -HSB-TTTSSS-BSS-------EEEE-TTCEEEEEHHHHHHHHHTT-----------SBBTTTTBB-SEE
T ss_pred CcCCCccCCcc-CCc-------eEEe-CCCChHHHHHHhHHhcccC-----------CCCCcCChhhcCC
Confidence 46789999995 333 2566 59999 9999999999833 5999999987643
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.93 E-value=5.5e-10 Score=72.47 Aligned_cols=39 Identities=38% Similarity=1.157 Sum_probs=30.5
Q ss_pred ccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (286)
Q Consensus 197 C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C 254 (286)
|+||++. +.+| .++..|||.||.+||.+|.+.+ ..||+|
T Consensus 1 C~iC~~~-~~~~-------~~~~~CGH~fC~~C~~~~~~~~-----------~~CP~C 39 (39)
T PF13923_consen 1 CPICLDE-LRDP-------VVVTPCGHSFCKECIEKYLEKN-----------PKCPVC 39 (39)
T ss_dssp ETTTTSB--SSE-------EEECTTSEEEEHHHHHHHHHCT-----------SB-TTT
T ss_pred CCCCCCc-ccCc-------CEECCCCCchhHHHHHHHHHCc-----------CCCcCC
Confidence 8999995 5555 4556799999999999999763 489998
No 11
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=98.93 E-value=2.3e-09 Score=98.50 Aligned_cols=53 Identities=32% Similarity=0.661 Sum_probs=46.1
Q ss_pred ccccccccccCCCCCC-CCCccCCCC-----CCCcccccccCCCCCCCCCcccCCCCCCC
Q 023176 5 VLCKFFAHGACLKGEH-CEFSHDWKD-----PPNNICTYYQKGFCSYGSRCRYEHVKPSR 58 (286)
Q Consensus 5 ~~C~~f~~G~C~~G~~-C~f~H~~~~-----~~~~~C~~f~~G~C~~G~~C~y~H~~~~~ 58 (286)
.+||-|++|.|++||. |+|.|.... -+...|.+|++|.|. +++|+|.|...+.
T Consensus 38 eVCReF~rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~kgrCs-R~nCkylHpp~hl 96 (331)
T KOG2494|consen 38 EVCREFLRNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQKGRCS-RENCKYLHPPQHL 96 (331)
T ss_pred HHHHHHHhccccCCCccccccCCCCCCCccCCeEEEEeccccCccC-cccceecCCChhh
Confidence 5899999999999998 999997553 345579999999999 8999999998764
No 12
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.88 E-value=2.3e-09 Score=100.72 Aligned_cols=95 Identities=24% Similarity=0.582 Sum_probs=71.0
Q ss_pred ccccccc-cccCCCCCCCCCccCC-CC----------------CCCccccccc-CCCCCC-CCCcccCCCCCCCCCcccC
Q 023176 5 VLCKFFA-HGACLKGEHCEFSHDW-KD----------------PPNNICTYYQ-KGFCSY-GSRCRYEHVKPSRSESAAS 64 (286)
Q Consensus 5 ~~C~~f~-~G~C~~G~~C~f~H~~-~~----------------~~~~~C~~f~-~G~C~~-G~~C~y~H~~~~~~~~~~~ 64 (286)
..|.+++ .|.|..|+.|+|.|.. .. .++.+|++|. .|.|+| |++|+|.|..........
T Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~- 165 (332)
T KOG1677|consen 87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSS- 165 (332)
T ss_pred cccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCccccccccc-
Confidence 5788777 4999999999999985 11 2467899999 799999 999999999865442210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCcCCCCCCccccCCCCCCCCCCccCChhh-hcCCCC
Q 023176 65 SSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSICSFA-AAGNCP 143 (286)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~g~~pe~s~~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~lC~y~-~~G~C~ 143 (286)
..........++.+|.+| .+|.|+
T Consensus 166 -------------------------------------------------------~~~~~~~~~~kt~lC~~f~~tG~C~ 190 (332)
T KOG1677|consen 166 -------------------------------------------------------ENQVGNPPKYKTKLCPKFQKTGLCK 190 (332)
T ss_pred -------------------------------------------------------chhhcCCCCCCCcCCCccccCCCCC
Confidence 000011134578999766 669999
Q ss_pred CCCCCcccCCCC
Q 023176 144 RGEKCPHIHGDT 155 (286)
Q Consensus 144 ~Gd~C~y~Hg~~ 155 (286)
||.+|+|+|+..
T Consensus 191 yG~rC~F~H~~~ 202 (332)
T KOG1677|consen 191 YGSRCRFIHGEP 202 (332)
T ss_pred CCCcCeecCCCc
Confidence 999999999987
No 13
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.86 E-value=1.7e-09 Score=70.67 Aligned_cols=41 Identities=39% Similarity=1.134 Sum_probs=32.6
Q ss_pred ccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (286)
Q Consensus 197 C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C 254 (286)
|+||++ ++.++ .++..|+|.||..||.+|++... ...||+|
T Consensus 1 C~iC~~-~~~~~-------~~~~~C~H~fC~~C~~~~~~~~~---------~~~CP~C 41 (41)
T PF00097_consen 1 CPICLE-PFEDP-------VILLPCGHSFCRDCLRKWLENSG---------SVKCPLC 41 (41)
T ss_dssp ETTTSS-BCSSE-------EEETTTSEEEEHHHHHHHHHHTS---------SSBTTTT
T ss_pred CCcCCc-cccCC-------CEEecCCCcchHHHHHHHHHhcC---------CccCCcC
Confidence 899999 56665 43557999999999999998622 2589998
No 14
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.84 E-value=1.1e-09 Score=95.95 Aligned_cols=49 Identities=31% Similarity=0.811 Sum_probs=25.4
Q ss_pred ccccccc-cccCCCCCCCCCccCCCCCCCcccccccCCCCCCCCCcccCCCC
Q 023176 5 VLCKFFA-HGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVK 55 (286)
Q Consensus 5 ~~C~~f~-~G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~ 55 (286)
+.||||. +|.|-+|..|+|.|+... ..+|.-|++|.|.....|..+|..
T Consensus 207 vycryynangicgkgaacrfvheptr--kticpkflngrcnkaedcnlshel 256 (377)
T KOG1492|consen 207 VYCRYYNANGICGKGAACRFVHEPTR--KTICPKFLNGRCNKAEDCNLSHEL 256 (377)
T ss_pred eEEEEecCCCcccCCceeeeeccccc--cccChHHhcCccCchhcCCccccc
Confidence 3455444 455555555555554333 445555555555555555555544
No 15
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.79 E-value=4.3e-09 Score=77.80 Aligned_cols=51 Identities=25% Similarity=0.683 Sum_probs=35.1
Q ss_pred CcccccccccccccCc-----cccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCC
Q 023176 193 QEIECSVCLDRVLSKP-----TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~-----~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR 255 (286)
.+..|+||++.+.+.. +..+..+.+. .|||.|+..||.+|.+.+ .+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~-~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWG-PCGHIFHFHCISQWLKQN-----------NTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEE-TTSEEEEHHHHHHHHTTS-----------SB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEec-ccCCCEEHHHHHHHHhcC-----------CcCCCCC
Confidence 3556999999763321 0123444444 699999999999999764 3999998
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.79 E-value=5.4e-09 Score=68.31 Aligned_cols=44 Identities=43% Similarity=1.111 Sum_probs=34.7
Q ss_pred cccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcc
Q 023176 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (286)
Q Consensus 196 ~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~ 257 (286)
+|+||++.+ .++ .+++.|+|.||..|+..|.+... ..||+||..
T Consensus 1 ~C~iC~~~~-~~~-------~~~~~C~H~~c~~C~~~~~~~~~----------~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-REP-------VVLLPCGHVFCRSCIDKWLKSGK----------NTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-hCc-------eEecCCCChhcHHHHHHHHHhCc----------CCCCCCCCc
Confidence 599999964 443 45556999999999999997622 489999975
No 17
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=6.8e-09 Score=99.33 Aligned_cols=69 Identities=30% Similarity=0.621 Sum_probs=53.1
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~ 270 (286)
....+.|+||++ ++..| +++ .|+|.||..||+.|+... ..||+||..+... -+..
T Consensus 23 Le~~l~C~IC~d-~~~~P-------vit-pCgH~FCs~CI~~~l~~~-----------~~CP~Cr~~~~~~-----~Lr~ 77 (397)
T TIGR00599 23 LDTSLRCHICKD-FFDVP-------VLT-SCSHTFCSLCIRRCLSNQ-----------PKCPLCRAEDQES-----KLRS 77 (397)
T ss_pred cccccCCCcCch-hhhCc-------cCC-CCCCchhHHHHHHHHhCC-----------CCCCCCCCccccc-----cCcc
Confidence 445789999999 67777 555 699999999999998642 3799999986421 2345
Q ss_pred cHHHHHHHHHHHhh
Q 023176 271 PEEKQEIIDSYKSK 284 (286)
Q Consensus 271 ~~~k~~li~~yk~~ 284 (286)
+...++||+.|+..
T Consensus 78 N~~L~~iVe~~~~~ 91 (397)
T TIGR00599 78 NWLVSEIVESFKNL 91 (397)
T ss_pred chHHHHHHHHHHHh
Confidence 56688899999853
No 18
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3.6e-09 Score=95.80 Aligned_cols=47 Identities=40% Similarity=0.962 Sum_probs=38.8
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
..+-.|.||||. .++| .-+ .|||+||.+||.+|-+.++ .||+||..+
T Consensus 237 ~a~~kC~LCLe~-~~~p-------SaT-pCGHiFCWsCI~~w~~ek~-----------eCPlCR~~~ 283 (293)
T KOG0317|consen 237 EATRKCSLCLEN-RSNP-------SAT-PCGHIFCWSCILEWCSEKA-----------ECPLCREKF 283 (293)
T ss_pred CCCCceEEEecC-CCCC-------CcC-cCcchHHHHHHHHHHcccc-----------CCCcccccC
Confidence 446889999995 5566 344 5999999999999998764 699999986
No 19
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=6.1e-09 Score=91.71 Aligned_cols=56 Identities=30% Similarity=0.902 Sum_probs=44.8
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc--cccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIP 263 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~--~~~p 263 (286)
...+.+|.||||. -++| |++.|||.||..||-+|...... .+.||+|+..+. .|||
T Consensus 44 ~~~~FdCNICLd~-akdP--------VvTlCGHLFCWpClyqWl~~~~~--------~~~cPVCK~~Vs~~~vvP 101 (230)
T KOG0823|consen 44 DGGFFDCNICLDL-AKDP--------VVTLCGHLFCWPCLYQWLQTRPN--------SKECPVCKAEVSIDTVVP 101 (230)
T ss_pred CCCceeeeeeccc-cCCC--------EEeecccceehHHHHHHHhhcCC--------CeeCCccccccccceEEe
Confidence 4567899999994 6665 55579999999999999987654 368999998875 5555
No 20
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.72 E-value=1.5e-08 Score=71.99 Aligned_cols=46 Identities=22% Similarity=0.439 Sum_probs=38.6
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
++.|+||++ ++++| +++ .|||+||..||.+|.+.. ..||+|+....
T Consensus 1 ~~~Cpi~~~-~~~~P-------v~~-~~G~v~~~~~i~~~~~~~-----------~~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLE-VMKDP-------VIL-PSGQTYERRAIEKWLLSH-----------GTDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCC-cCCCC-------EEC-CCCCEEeHHHHHHHHHHC-----------CCCCCCcCCCC
Confidence 467999999 67777 677 599999999999999762 48999998863
No 21
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.3e-08 Score=98.54 Aligned_cols=72 Identities=26% Similarity=0.634 Sum_probs=48.9
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc--cccCceeeCC
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYYT 270 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~--~~p~~~~~~~ 270 (286)
.+..|+|||+. . .++.+.+|||+||..||.+.+.... ...-+.||+||..+.. |-| .+|..+
T Consensus 185 t~~~CPICL~~-~--------~~p~~t~CGHiFC~~CiLqy~~~s~------~~~~~~CPiC~s~I~~kdl~p-v~~e~~ 248 (513)
T KOG2164|consen 185 TDMQCPICLEP-P--------SVPVRTNCGHIFCGPCILQYWNYSA------IKGPCSCPICRSTITLKDLLP-VFIEDD 248 (513)
T ss_pred cCCcCCcccCC-C--------CcccccccCceeeHHHHHHHHhhhc------ccCCccCCchhhhccccceee-eeeccc
Confidence 38999999995 2 2356668999999999987665431 2334799999999875 554 455544
Q ss_pred cHHHHHHHHHHH
Q 023176 271 PEEKQEIIDSYK 282 (286)
Q Consensus 271 ~~~k~~li~~yk 282 (286)
..|++ ++.+-
T Consensus 249 -qkke~-l~~~~ 258 (513)
T KOG2164|consen 249 -QKKEE-LKLHQ 258 (513)
T ss_pred -cccHH-HHHHh
Confidence 23333 55443
No 22
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.70 E-value=7.8e-09 Score=90.76 Aligned_cols=85 Identities=33% Similarity=0.759 Sum_probs=74.1
Q ss_pred CCccccccccccCCCCCCCCCccCCCCCCCcccccccCCCCCCCCCcccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCC
Q 023176 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAASSSSSVSHPSRATSSGITK 82 (286)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (286)
...+|.-|++|+|.+.++|.++|+++.++.+.|+||+-|.|. ..+|+|.|..-.
T Consensus 232 rkticpkflngrcnkaedcnlsheldprripacryfllgkcn-npncryvhihys------------------------- 285 (377)
T KOG1492|consen 232 RKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFLLGKCN-NPNCRYVHIHYS------------------------- 285 (377)
T ss_pred ccccChHHhcCccCchhcCCcccccCccccchhhhhhhccCC-CCCceEEEEeec-------------------------
Confidence 567999999999999999999999999999999999999998 899999998622
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCcCCCCCCccccCCCCCCCCCCccCC-hhhhcCCCCCCCCCcccCCCCCCCC
Q 023176 83 VPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSIC-SFAAAGNCPRGEKCPHIHGDTCPTC 159 (286)
Q Consensus 83 ~~g~~pe~s~~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~lC-~y~~~G~C~~Gd~C~y~Hg~~c~~c 159 (286)
...++| -|+.-|+|..|..|.-.|-..|...
T Consensus 286 ----------------------------------------------enapicfefakygfcelgtscknqhilqctdy 317 (377)
T KOG1492|consen 286 ----------------------------------------------ENAPICFEFAKYGFCELGTSCKNQHILQCTDY 317 (377)
T ss_pred ----------------------------------------------CCCceeeeehhcceeccccccccceeeeecch
Confidence 012567 6889999999999999998887643
No 23
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.70 E-value=7.5e-08 Score=90.43 Aligned_cols=59 Identities=42% Similarity=0.973 Sum_probs=49.9
Q ss_pred CCccccccc-cccCCC-CCCCCCccCCCC---------------CCCcccccccC-CCCCCCCCcccCCCCCCCCCc
Q 023176 3 KRVLCKFFA-HGACLK-GEHCEFSHDWKD---------------PPNNICTYYQK-GFCSYGSRCRYEHVKPSRSES 61 (286)
Q Consensus 3 k~~~C~~f~-~G~C~~-G~~C~f~H~~~~---------------~~~~~C~~f~~-G~C~~G~~C~y~H~~~~~~~~ 61 (286)
|+.+|++|. .|.|++ |++|+|.|.... .++.+|.+|++ |.|.||.+|+|.|........
T Consensus 131 kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~~~ 207 (332)
T KOG1677|consen 131 KTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDRAS 207 (332)
T ss_pred cCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccccc
Confidence 789999888 599999 999999997542 24779999995 999999999999998765443
No 24
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1e-08 Score=86.85 Aligned_cols=49 Identities=35% Similarity=0.830 Sum_probs=38.7
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
+.-..|+|||+.+-++- .+-.+|||+||..||+..++.. ..||+||++.
T Consensus 129 ~~~~~CPiCl~~~sek~-------~vsTkCGHvFC~~Cik~alk~~-----------~~CP~C~kkI 177 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKV-------PVSTKCGHVFCSQCIKDALKNT-----------NKCPTCRKKI 177 (187)
T ss_pred ccccCCCceecchhhcc-------ccccccchhHHHHHHHHHHHhC-----------CCCCCccccc
Confidence 33478999999765542 3546899999999999999765 4899999754
No 25
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.62 E-value=1.4e-08 Score=87.25 Aligned_cols=111 Identities=22% Similarity=0.611 Sum_probs=67.0
Q ss_pred ccCC-hhhhcCCCCCCCCCcccCCCCCCCCCCccccCCChHHHHHHHHHHHHHHHHHHHHh---ccCccccccccccccc
Q 023176 131 RSIC-SFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALR---RSQEIECSVCLDRVLS 206 (286)
Q Consensus 131 ~~lC-~y~~~G~C~~Gd~C~y~Hg~~c~~c~~~~l~p~~~~~~~e~~~~~~~~~~~~~~~~---~~~~~~C~IC~e~i~~ 206 (286)
..+| .|-++|.|-|||.|.|+|.-.==.-| | -+|.+=..+ .|+..++. ...-..|+||-+. |+
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D~KtG-W---kLn~EWnA~--------~Ee~~v~~~~~e~IPF~C~iCKkd-y~ 207 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSDFKTG-W---KLNQEWNAE--------YEEAPVISGPGEKIPFLCGICKKD-YE 207 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhhhhcc-c---ccchhhcch--------hhhcccccCCCCCCceeehhchhh-cc
Confidence 4679 57799999999999999965300000 0 011111110 01111111 1123579999995 77
Q ss_pred CccccccceeecCCCCCcCcHHHH-HHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCcHHHHHHHHH
Q 023176 207 KPTAAERKFGLLSECDHPFCISCI-RNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEKQEIIDS 280 (286)
Q Consensus 207 ~~~~~~~~~~~l~~C~H~fC~~Ci-~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~~~k~~li~~ 280 (286)
.| |..+|||.||..|. +.+++. ..|-+|-+.. -..+||..+ -++++.+
T Consensus 208 sp--------vvt~CGH~FC~~Cai~~y~kg------------~~C~~Cgk~t----~G~f~V~~d--~~kmL~~ 256 (259)
T COG5152 208 SP--------VVTECGHSFCSLCAIRKYQKG------------DECGVCGKAT----YGRFWVVSD--LQKMLNK 256 (259)
T ss_pred ch--------hhhhcchhHHHHHHHHHhccC------------Ccceecchhh----ccceeHHhh--HHHHHhh
Confidence 66 55589999999995 555532 3899998874 456788665 4445543
No 26
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.60 E-value=3.2e-08 Score=74.66 Aligned_cols=59 Identities=25% Similarity=0.722 Sum_probs=41.1
Q ss_pred cCcccccccccccccC--cc---cccc-ceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 192 SQEIECSVCLDRVLSK--PT---AAER-KFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~--~~---~~~~-~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
.+|..|+||... |+- |+ |++. .+ ++-.|+|.|.+-||.+|.++... ...||+||+...|
T Consensus 19 ~~dd~CgICr~~-fdg~Cp~Ck~Pgd~Cpl-v~g~C~H~FH~hCI~kWl~~~~~--------~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 19 ANDDVCGICRMP-FDGCCPDCKFPGDDCPL-VWGKCSHNFHMHCILKWLSTQSS--------KGQCPMCRQPWKF 83 (85)
T ss_pred CCCCceeeEecc-cccCCCCccCCCCCCce-eeccCccHHHHHHHHHHHccccC--------CCCCCCcCCeeee
Confidence 348899999985 551 11 1222 33 34469999999999999986432 2599999998754
No 27
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.58 E-value=6.7e-08 Score=88.44 Aligned_cols=55 Identities=40% Similarity=0.915 Sum_probs=50.5
Q ss_pred CCccccccccccCCCCCCCCCccCCCCCC--Ccccccc-cCCCCCCCCCcccCCCCCC
Q 023176 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPP--NNICTYY-QKGFCSYGSRCRYEHVKPS 57 (286)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~--~~~C~~f-~~G~C~~G~~C~y~H~~~~ 57 (286)
..++|++|+.|.|+.|..|.|+|+.+..+ ...|++| +.|.|..|..|.|.|.+|.
T Consensus 103 s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~ 160 (285)
T COG5084 103 SSVVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHIDPD 160 (285)
T ss_pred CCcccchhccccCcCCCccccccCCCcccccCCCcccccccceeccCCCCCccccCcc
Confidence 46899999999999999999999988777 8899999 6999999999999999844
No 28
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.54 E-value=6.2e-08 Score=64.48 Aligned_cols=44 Identities=39% Similarity=1.025 Sum_probs=33.3
Q ss_pred cccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCc
Q 023176 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256 (286)
Q Consensus 196 ~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~ 256 (286)
.|+||++.+ ++ ++++.++ .|||+||..||.++. .. ...||+||+
T Consensus 1 ~C~~C~~~~-~~----~~~~~l~-~CgH~~C~~C~~~~~-~~----------~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKY-SE----ERRPRLT-SCGHIFCEKCLKKLK-GK----------SVKCPICRK 44 (44)
T ss_pred CCcCcCccc-cC----CCCeEEc-ccCCHHHHHHHHhhc-CC----------CCCCcCCCC
Confidence 499999964 21 3455666 699999999999998 22 259999985
No 29
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.49 E-value=6.8e-08 Score=89.13 Aligned_cols=65 Identities=28% Similarity=0.604 Sum_probs=49.9
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCcHH
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEE 273 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~~~ 273 (286)
-+-|+||+| .|.-| .|.| |+|+||.-|||+....+. .||.|++.+.-- -+..+.-
T Consensus 23 lLRC~IC~e-yf~ip-------~itp-CsHtfCSlCIR~~L~~~p-----------~CP~C~~~~~Es-----~Lr~n~i 77 (442)
T KOG0287|consen 23 LLRCGICFE-YFNIP-------MITP-CSHTFCSLCIRKFLSYKP-----------QCPTCCVTVTES-----DLRNNRI 77 (442)
T ss_pred HHHHhHHHH-HhcCc-------eecc-ccchHHHHHHHHHhccCC-----------CCCceecccchh-----hhhhhhH
Confidence 366999999 57766 5665 999999999999997653 899999987521 1334555
Q ss_pred HHHHHHHHHh
Q 023176 274 KQEIIDSYKS 283 (286)
Q Consensus 274 k~~li~~yk~ 283 (286)
.++||+.|+-
T Consensus 78 l~Eiv~S~~~ 87 (442)
T KOG0287|consen 78 LDEIVKSLNF 87 (442)
T ss_pred HHHHHHHHHH
Confidence 7889988864
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.47 E-value=1.7e-07 Score=69.21 Aligned_cols=68 Identities=18% Similarity=0.316 Sum_probs=48.1
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCcH
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPE 272 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~~ 272 (286)
+++.|+|+.+ |+.+| ++++ +||+|+.++|.+|..... .+||+++..... . - +..+.
T Consensus 3 ~~f~CpIt~~-lM~dP-------Vi~~-~G~tyer~~I~~~l~~~~----------~~~P~t~~~l~~---~-~-l~pn~ 58 (73)
T PF04564_consen 3 DEFLCPITGE-LMRDP-------VILP-SGHTYERSAIERWLEQNG----------GTDPFTRQPLSE---S-D-LIPNR 58 (73)
T ss_dssp GGGB-TTTSS-B-SSE-------EEET-TSEEEEHHHHHHHHCTTS----------SB-TTT-SB-SG---G-G-SEE-H
T ss_pred cccCCcCcCc-HhhCc-------eeCC-cCCEEcHHHHHHHHHcCC----------CCCCCCCCcCCc---c-c-ceECH
Confidence 5789999999 79998 7885 889999999999998632 599999887652 1 1 22345
Q ss_pred HHHHHHHHHHhh
Q 023176 273 EKQEIIDSYKSK 284 (286)
Q Consensus 273 ~k~~li~~yk~~ 284 (286)
.....|+.|.++
T Consensus 59 ~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 59 ALKSAIEEWCAE 70 (73)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677888888764
No 31
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.44 E-value=1.8e-07 Score=58.86 Aligned_cols=39 Identities=51% Similarity=1.297 Sum_probs=30.1
Q ss_pred ccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (286)
Q Consensus 197 C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C 254 (286)
|+||++. ...+ .++ .|+|.||..||..|.+.. ...||+|
T Consensus 1 C~iC~~~-~~~~-------~~~-~C~H~~c~~C~~~~~~~~----------~~~CP~C 39 (39)
T smart00184 1 CPICLEE-LKDP-------VVL-PCGHTFCRSCIRKWLKSG----------NNTCPIC 39 (39)
T ss_pred CCcCccC-CCCc-------EEe-cCCChHHHHHHHHHHHhC----------cCCCCCC
Confidence 7899995 3333 566 599999999999999722 1479987
No 32
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.7e-07 Score=87.51 Aligned_cols=58 Identities=26% Similarity=0.762 Sum_probs=43.8
Q ss_pred ccCcccccccccccccCcc-c----cccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 191 RSQEIECSVCLDRVLSKPT-A----AERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~-~----~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
.+.|-.|.||||.++..+. + .+.+=--|| |||+|.+.|++.|...+| +||+||.+..|
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQ-----------TCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQ-----------TCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhcc-----------CCCcccCcccc
Confidence 5778999999998776541 0 011113465 999999999999998776 89999998544
No 33
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.36 E-value=2.2e-07 Score=61.55 Aligned_cols=35 Identities=31% Similarity=0.781 Sum_probs=20.0
Q ss_pred ccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhC
Q 023176 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSS 237 (286)
Q Consensus 197 C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~ 237 (286)
|+||.| . ..+ +..=.+|+ |||+||.+||.+|.+..
T Consensus 1 CpIc~e-~-~~~---~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-F-STE---ENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT------TT---SS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-c-cCC---CCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 4 331 11115675 99999999999999865
No 34
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4e-07 Score=81.68 Aligned_cols=68 Identities=24% Similarity=0.596 Sum_probs=51.5
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeC
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY 269 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~ 269 (286)
...++++|+||++ .+..| .+| .|+|+||..||..|+. . ...||.||. ... ++.
T Consensus 9 ~~~~~~~C~iC~~-~~~~p-------~~l-~C~H~~c~~C~~~~~~-~----------~~~Cp~cr~-~~~------~~~ 61 (386)
T KOG2177|consen 9 VLQEELTCPICLE-YFREP-------VLL-PCGHNFCRACLTRSWE-G----------PLSCPVCRP-PSR------NLR 61 (386)
T ss_pred hccccccChhhHH-HhhcC-------ccc-cccchHhHHHHHHhcC-C----------CcCCcccCC-chh------ccC
Confidence 4567899999999 57776 677 4999999999999887 1 259999994 211 455
Q ss_pred CcHHHHHHHHHHHhh
Q 023176 270 TPEEKQEIIDSYKSK 284 (286)
Q Consensus 270 ~~~~k~~li~~yk~~ 284 (286)
.+.....|++.|+..
T Consensus 62 ~n~~l~~~~~~~~~~ 76 (386)
T KOG2177|consen 62 PNVLLANLVERLRQL 76 (386)
T ss_pred ccHHHHHHHHHHHhc
Confidence 667777788887653
No 35
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.9e-07 Score=86.34 Aligned_cols=52 Identities=29% Similarity=0.772 Sum_probs=41.6
Q ss_pred ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (286)
Q Consensus 195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~ 262 (286)
.+|.||||. |++- .+..+|| |+|.|...||..|..... ..||+|+.......
T Consensus 230 ~~CaIClEd-Y~~G----dklRiLP-C~H~FH~~CIDpWL~~~r----------~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 230 DTCAICLED-YEKG----DKLRILP-CSHKFHVNCIDPWLTQTR----------TFCPVCKRDIRTDS 281 (348)
T ss_pred ceEEEeecc-cccC----CeeeEec-CCCchhhccchhhHhhcC----------ccCCCCCCcCCCCC
Confidence 499999996 6653 4668896 999999999999997642 47999999765433
No 36
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=2.5e-07 Score=83.01 Aligned_cols=48 Identities=31% Similarity=0.853 Sum_probs=37.7
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHH-HHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN-WRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~-w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
..|-.|.||+|. .++| ..+ .|||+||..||.. |-+.+- --||+||..+
T Consensus 213 ~~d~kC~lC~e~-~~~p-------s~t-~CgHlFC~~Cl~~~~t~~k~----------~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEE-PEVP-------SCT-PCGHLFCLSCLLISWTKKKY----------EFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecc-cCCc-------ccc-cccchhhHHHHHHHHHhhcc----------ccCchhhhhc
Confidence 446779999994 6666 556 4999999999998 876542 3699999975
No 37
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=4e-07 Score=83.04 Aligned_cols=55 Identities=29% Similarity=0.877 Sum_probs=44.4
Q ss_pred HHhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 188 ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 188 ~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
+.+.....+|.|||+.+. |. .++.+|| |+|.|...||.+|+-.- ...||.||...
T Consensus 317 ~~ea~~GveCaICms~fi-K~----d~~~vlP-C~H~FH~~Cv~kW~~~y----------~~~CPvCrt~i 371 (374)
T COG5540 317 AVEADKGVECAICMSNFI-KN----DRLRVLP-CDHRFHVGCVDKWLLGY----------SNKCPVCRTAI 371 (374)
T ss_pred HHhcCCCceEEEEhhhhc-cc----ceEEEec-cCceechhHHHHHHhhh----------cccCCccCCCC
Confidence 456677899999999754 43 4588996 99999999999999742 14899999874
No 38
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.26 E-value=2.7e-07 Score=65.79 Aligned_cols=44 Identities=41% Similarity=1.053 Sum_probs=22.6
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
-+.|+||.+ ++.+| +.|.+|.|+||..||+.-.. ..||+|+++.
T Consensus 7 lLrCs~C~~-~l~~p-------v~l~~CeH~fCs~Ci~~~~~-------------~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFD-ILKEP-------VCLGGCEHIFCSSCIRDCIG-------------SECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S---SS--------B---SSS--B-TTTGGGGTT-------------TB-SSS--B-
T ss_pred hcCCcHHHH-HhcCC-------ceeccCccHHHHHHhHHhcC-------------CCCCCcCChH
Confidence 356999999 78888 78889999999999965321 2599999874
No 39
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.26 E-value=1.3e-06 Score=80.89 Aligned_cols=53 Identities=23% Similarity=0.519 Sum_probs=39.7
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
++..|+||....+-.| .-+|.+. .|||.||.+||...+.... ..||+|+..+.
T Consensus 2 d~~~CP~Ck~~~y~np---~~kl~i~-~CGH~~C~sCv~~l~~~~~----------~~CP~C~~~lr 54 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNP---SLKLMVN-VCGHTLCESCVDLLFVRGS----------GSCPECDTPLR 54 (309)
T ss_pred CCCCCCcCCCCCccCc---ccccccC-CCCCcccHHHHHHHhcCCC----------CCCCCCCCccc
Confidence 4578999999877766 2344444 6999999999998553321 38999999875
No 40
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=98.25 E-value=6.7e-07 Score=83.59 Aligned_cols=51 Identities=25% Similarity=0.642 Sum_probs=44.5
Q ss_pred cccccccc--ccCCCCCCCCCccCCC--CCCCcccccccCCCCCCCCCcccCCCC
Q 023176 5 VLCKFFAH--GACLKGEHCEFSHDWK--DPPNNICTYYQKGFCSYGSRCRYEHVK 55 (286)
Q Consensus 5 ~~C~~f~~--G~C~~G~~C~f~H~~~--~~~~~~C~~f~~G~C~~G~~C~y~H~~ 55 (286)
..|.++.. -.|.+|..|...|... ..+..+|+||+.|.|..||.|-|+|..
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vcK~~l~glC~kgD~C~Flhe~ 100 (325)
T KOG1040|consen 46 ATCEFNESREKPCERGPICPKSHNDVSDSRGKVVCKHWLRGLCKKGDQCEFLHEY 100 (325)
T ss_pred chhcccccCCCCccCCCCCccccCCccccCCceeehhhhhhhhhccCcCcchhhh
Confidence 56776665 6799999999999863 677899999999999999999999987
No 41
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=98.24 E-value=1.7e-07 Score=85.05 Aligned_cols=57 Identities=39% Similarity=0.966 Sum_probs=47.1
Q ss_pred CCccccccccccCCCCCCCCCccCCCC------------CCC------------------------cccccccC----C-
Q 023176 3 KRVLCKFFAHGACLKGEHCEFSHDWKD------------PPN------------------------NICTYYQK----G- 41 (286)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~~~------------~~~------------------------~~C~~f~~----G- 41 (286)
|+++|-||.+|.|..|+.|+|+|++.. .+. .||+||+. |
T Consensus 91 KSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE~~k 170 (343)
T KOG1763|consen 91 KSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVENGK 170 (343)
T ss_pred hHHHHHHHhccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCC
Confidence 789999999999999999999999762 112 28999983 2
Q ss_pred -----CCCCCC-CcccCCCCCCCC
Q 023176 42 -----FCSYGS-RCRYEHVKPSRS 59 (286)
Q Consensus 42 -----~C~~G~-~C~y~H~~~~~~ 59 (286)
.|++|. .|.|.|..|+..
T Consensus 171 YGWfW~CPnGg~~C~YrHaLP~Gy 194 (343)
T KOG1763|consen 171 YGWFWECPNGGDKCIYRHALPEGY 194 (343)
T ss_pred ccceeECCCCCCeeeeeecCCcch
Confidence 499986 799999998754
No 42
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=98.22 E-value=2.6e-07 Score=55.15 Aligned_cols=24 Identities=46% Similarity=1.144 Sum_probs=16.7
Q ss_pred CCcccccccc-ccCCCCCCCCCccC
Q 023176 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 (286)
Q Consensus 3 k~~~C~~f~~-G~C~~G~~C~f~H~ 26 (286)
|+.+|++|++ |.|++|++|+|+|+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 5678887776 88888888888886
No 43
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=5.3e-07 Score=61.94 Aligned_cols=51 Identities=31% Similarity=0.675 Sum_probs=36.3
Q ss_pred cCcccccccccccccCccccccceeecCCCCCc-CcHHHH-HHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCI-RNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci-~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~ 262 (286)
+-+.+|.||+|...+. +|-.|||. .|++|- +.|+..+ ..||+||.+..-||
T Consensus 5 ~~~dECTICye~pvds---------VlYtCGHMCmCy~Cg~rl~~~~~-----------g~CPiCRapi~dvI 57 (62)
T KOG4172|consen 5 QWSDECTICYEHPVDS---------VLYTCGHMCMCYACGLRLKKALH-----------GCCPICRAPIKDVI 57 (62)
T ss_pred ccccceeeeccCcchH---------HHHHcchHHhHHHHHHHHHHccC-----------CcCcchhhHHHHHH
Confidence 3458899999976552 44469996 699995 5666432 48999999865443
No 44
>smart00356 ZnF_C3H1 zinc finger.
Probab=98.09 E-value=2e-06 Score=50.78 Aligned_cols=24 Identities=50% Similarity=1.131 Sum_probs=19.0
Q ss_pred CCccccccccccCCCCCCCCCccC
Q 023176 3 KRVLCKFFAHGACLKGEHCEFSHD 26 (286)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~ 26 (286)
|..+|++|++|.|.+|++|+|+|+
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCc
Confidence 556788888888888888888886
No 45
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.6e-06 Score=86.84 Aligned_cols=52 Identities=31% Similarity=0.674 Sum_probs=39.2
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~ 256 (286)
....+..|.||+|.+..-+ +..-..|+ |+|+|+..||++|....+ +||+||.
T Consensus 287 ~~~~~~~C~IC~e~l~~~~---~~~~~rL~-C~Hifh~~CL~~W~er~q-----------tCP~CR~ 338 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGH---NITPKRLP-CGHIFHDSCLRSWFERQQ-----------TCPTCRT 338 (543)
T ss_pred hhhcCCeeeeechhhcccc---ccccceee-cccchHHHHHHHHHHHhC-----------cCCcchh
Confidence 4455889999999654421 00014675 999999999999998754 9999999
No 46
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.4e-06 Score=79.33 Aligned_cols=102 Identities=21% Similarity=0.502 Sum_probs=62.3
Q ss_pred ccCCh-hhhcCCCCCCCCCcccCCCCCCCCCCccccCCChHHHHHHHHHHHHHHHHHHHHhccCc---cccccccccccc
Q 023176 131 RSICS-FAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQE---IECSVCLDRVLS 206 (286)
Q Consensus 131 ~~lC~-y~~~G~C~~Gd~C~y~Hg~~c~~c~~~~l~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~---~~C~IC~e~i~~ 206 (286)
..+|. |-.+|.|.|||.|.|+|--.+=--|=+ |+ .+ +.+.. +.-.......+ ..|.||-+. |.
T Consensus 186 pDicKdykeTgycg~gdSckFlh~r~DyK~GWq-i~---~e-~d~~k-------e~~~~~~~D~~~~Pf~c~icr~~-f~ 252 (313)
T KOG1813|consen 186 PDICKDYKETGYCGYGDSCKFLHDRSDYKAGWQ-IE---FE-WDSAK-------EKKRVKIEDIELLPFKCFICRKY-FY 252 (313)
T ss_pred chhhhhhHhhCcccccchhhhhhhhhhccccce-ee---hh-hhccc-------cccceecCCcccCCccccccccc-cc
Confidence 46795 669999999999999997764222211 11 11 11010 11111111222 459999996 55
Q ss_pred CccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceee
Q 023176 207 KPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWY 268 (286)
Q Consensus 207 ~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~ 268 (286)
.| |.+.|+|.||..|-.+-.+.. ..|++|-+... +.+|+
T Consensus 253 ~p--------Vvt~c~h~fc~~ca~~~~qk~-----------~~c~vC~~~t~----g~~~~ 291 (313)
T KOG1813|consen 253 RP--------VVTKCGHYFCEVCALKPYQKG-----------EKCYVCSQQTH----GSFNV 291 (313)
T ss_pred cc--------hhhcCCceeehhhhccccccC-----------Ccceecccccc----cccch
Confidence 55 555799999999976655432 38999988754 45555
No 47
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.03 E-value=3.3e-06 Score=76.72 Aligned_cols=65 Identities=31% Similarity=0.631 Sum_probs=48.1
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCcHH
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEE 273 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~~~ 273 (286)
-+-|-||-+. +.-| ++..|||.||.-||+.....+. -||+||..+.++. +....-
T Consensus 25 ~lrC~IC~~~-i~ip--------~~TtCgHtFCslCIR~hL~~qp-----------~CP~Cr~~~~esr-----lr~~s~ 79 (391)
T COG5432 25 MLRCRICDCR-ISIP--------CETTCGHTFCSLCIRRHLGTQP-----------FCPVCREDPCESR-----LRGSSG 79 (391)
T ss_pred HHHhhhhhhe-eecc--------eecccccchhHHHHHHHhcCCC-----------CCccccccHHhhh-----cccchh
Confidence 3669999995 4444 5556999999999999997653 7999999887543 223344
Q ss_pred HHHHHHHHHh
Q 023176 274 KQEIIDSYKS 283 (286)
Q Consensus 274 k~~li~~yk~ 283 (286)
-++||+.|+.
T Consensus 80 ~~ei~es~~~ 89 (391)
T COG5432 80 SREINESHAR 89 (391)
T ss_pred HHHHHHhhhh
Confidence 6678888764
No 48
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.96 E-value=3e-06 Score=50.48 Aligned_cols=25 Identities=40% Similarity=1.062 Sum_probs=18.1
Q ss_pred CccCChhh-hcCCCCCCCCCcccCCC
Q 023176 130 DRSICSFA-AAGNCPRGEKCPHIHGD 154 (286)
Q Consensus 130 ~~~lC~y~-~~G~C~~Gd~C~y~Hg~ 154 (286)
++.+|++| +.|.|++|++|+|+|+.
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred ccccChhhccCCccCCCCCcCccCCC
Confidence 46789866 66999999999999973
No 49
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=1.1e-05 Score=77.55 Aligned_cols=25 Identities=8% Similarity=-0.130 Sum_probs=22.3
Q ss_pred cCChhhhcCCCCCCCCCcccCCCCC
Q 023176 132 SICSFAAAGNCPRGEKCPHIHGDTC 156 (286)
Q Consensus 132 ~lC~y~~~G~C~~Gd~C~y~Hg~~c 156 (286)
..|-++++|.|-.||-|-|+|+-..
T Consensus 119 ~P~l~~~K~~e~~~D~~s~Lh~P~A 143 (667)
T KOG4791|consen 119 SPQLRSVKKVESSEDVPSPLHPPVA 143 (667)
T ss_pred chHHHHhhhhhhhccccccCCCCcc
Confidence 4589999999999999999999864
No 50
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.82 E-value=1.2e-05 Score=59.56 Aligned_cols=55 Identities=22% Similarity=0.525 Sum_probs=38.6
Q ss_pred ccccccccccccCc--------cccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176 195 IECSVCLDRVLSKP--------TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (286)
Q Consensus 195 ~~C~IC~e~i~~~~--------~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~ 261 (286)
..|+||...|++.= +..|-..+.- -|+|.|..-||.+|.+++ ..||++|+.+.+-
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG-~CnHaFH~HCI~rWL~Tk-----------~~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWG-VCNHAFHDHCIYRWLDTK-----------GVCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcceEEEE-ecchHHHHHHHHHHHhhC-----------CCCCCCCceeEEe
Confidence 56888887665421 1122232333 499999999999999875 3899999987653
No 51
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.80 E-value=7.2e-06 Score=75.72 Aligned_cols=25 Identities=28% Similarity=0.800 Sum_probs=22.9
Q ss_pred CcccccccCCCCCCCCC-cccCCCCC
Q 023176 32 NNICTYYQKGFCSYGSR-CRYEHVKP 56 (286)
Q Consensus 32 ~~~C~~f~~G~C~~G~~-C~y~H~~~ 56 (286)
..|||.||+|.|..||+ |+|.|...
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP~~ 62 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHPPK 62 (331)
T ss_pred HHHHHHHHhccccCCCccccccCCCC
Confidence 46899999999999999 99999874
No 52
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.78 E-value=1.8e-05 Score=46.65 Aligned_cols=25 Identities=32% Similarity=1.254 Sum_probs=22.5
Q ss_pred CCcccccccCCCCCCCCCcccCCCC
Q 023176 31 PNNICTYYQKGFCSYGSRCRYEHVK 55 (286)
Q Consensus 31 ~~~~C~~f~~G~C~~G~~C~y~H~~ 55 (286)
+..+|++|++|.|.+|++|+|+|..
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCcC
Confidence 4678999999999999999999973
No 53
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.77 E-value=6.3e-06 Score=60.41 Aligned_cols=65 Identities=22% Similarity=0.464 Sum_probs=27.1
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
+.+|+||++.+++... .....=--+.|+..|...||.+|..........-..+...||.|+.+..
T Consensus 2 ~~~C~IC~~~~~~~~~-~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGE-IPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCC-cCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 6789999997663211 1111112247999999999999988632211112234468999998764
No 54
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=6.3e-06 Score=79.30 Aligned_cols=52 Identities=35% Similarity=0.743 Sum_probs=43.4
Q ss_pred ccccccccccCCCCCCCCCccCCCC-CCCcccccccCCCCCCCCCcccCCCCCC
Q 023176 5 VLCKFFAHGACLKGEHCEFSHDWKD-PPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (286)
Q Consensus 5 ~~C~~f~~G~C~~G~~C~f~H~~~~-~~~~~C~~f~~G~C~~G~~C~y~H~~~~ 57 (286)
..|.||+.-.|++|+.|.|+|..+. .+..+|++|+.+.|- .+.|+|.|+.-.
T Consensus 4 ~dcyff~ys~cKk~d~c~~rh~E~al~n~t~C~~w~~~~~C-~k~C~YRHSe~~ 56 (667)
T KOG4791|consen 4 EDCYFFFYSTCKKGDSCPFRHCEAALGNETVCTLWQEGRCC-RKVCRYRHSEID 56 (667)
T ss_pred ccchhhhhhhhhccCcCcchhhHHHhcCcchhhhhhhcCcc-cccccchhhHHh
Confidence 4689999999999999999998654 457889999987655 459999999844
No 55
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=5.1e-06 Score=77.41 Aligned_cols=50 Identities=36% Similarity=0.763 Sum_probs=39.4
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
-.++.|+|||+ |+.+. .+...|.|-||.+||.+-..... ..||.||+...
T Consensus 41 ~~~v~c~icl~-llk~t-------mttkeClhrfc~~ci~~a~r~gn----------~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLS-LLKKT-------MTTKECLHRFCFDCIWKALRSGN----------NECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHH-HHHhh-------cccHHHHHHHHHHHHHHHHHhcC----------CCCchHHhhcc
Confidence 34788999999 66665 56668999999999987665443 59999999753
No 56
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=97.55 E-value=0.0001 Score=67.54 Aligned_cols=55 Identities=33% Similarity=0.838 Sum_probs=46.6
Q ss_pred ccccccc-cccCCC---CCCCCCc---cCCCC---------CCCccccccc-CCCCCCCCCcccCCCCCCCC
Q 023176 5 VLCKFFA-HGACLK---GEHCEFS---HDWKD---------PPNNICTYYQ-KGFCSYGSRCRYEHVKPSRS 59 (286)
Q Consensus 5 ~~C~~f~-~G~C~~---G~~C~f~---H~~~~---------~~~~~C~~f~-~G~C~~G~~C~y~H~~~~~~ 59 (286)
.+|.-|. .|.|.. |+.|.|+ |.+.. .++..|.-|+ -|.|.||.+|.|.|......
T Consensus 231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~i 302 (351)
T COG5063 231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDI 302 (351)
T ss_pred HHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChhhc
Confidence 7898666 699999 9999999 98764 3578899999 59999999999999986543
No 57
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=3.7e-05 Score=77.99 Aligned_cols=47 Identities=30% Similarity=0.752 Sum_probs=38.7
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
-+.|+.|-+..-+ ++++.|+|.||..||+.-..+++ +.||.|-..|.
T Consensus 643 ~LkCs~Cn~R~Kd---------~vI~kC~H~FC~~Cvq~r~etRq----------RKCP~Cn~aFg 689 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---------AVITKCGHVFCEECVQTRYETRQ----------RKCPKCNAAFG 689 (698)
T ss_pred ceeCCCccCchhh---------HHHHhcchHHHHHHHHHHHHHhc----------CCCCCCCCCCC
Confidence 4789999985333 56778999999999999887776 69999988864
No 58
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.41 E-value=5.2e-05 Score=72.71 Aligned_cols=51 Identities=31% Similarity=0.817 Sum_probs=36.6
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
..+--+|+||||. ++..+ .-...+ -|+|.|...|+.+|+. .+||+||-...
T Consensus 172 ~tELPTCpVCLER-MD~s~--~gi~t~--~c~Hsfh~~cl~~w~~-------------~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLER-MDSST--TGILTI--LCNHSFHCSCLMKWWD-------------SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhh-cCccc--cceeee--ecccccchHHHhhccc-------------CcChhhhhhcC
Confidence 3455789999997 44321 112233 4999999999999985 38999997654
No 59
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00011 Score=70.75 Aligned_cols=73 Identities=23% Similarity=0.513 Sum_probs=50.9
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC-
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT- 270 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~- 270 (286)
..+..|.||+. ++.+| +++ +|||.||..||.+-.... .-||.||..+.... ...-+..
T Consensus 82 ~sef~c~vc~~-~l~~p-------v~t-pcghs~c~~Cl~r~ld~~-----------~~cp~Cr~~l~e~~-~~~~~~~~ 140 (398)
T KOG4159|consen 82 RSEFECCVCSR-ALYPP-------VVT-PCGHSFCLECLDRSLDQE-----------TECPLCRDELVELP-ALEQALSL 140 (398)
T ss_pred cchhhhhhhHh-hcCCC-------ccc-cccccccHHHHHHHhccC-----------CCCcccccccccch-HHHHHHHH
Confidence 56899999999 46566 566 699999999998854421 48999999876411 1111222
Q ss_pred cHHHHHHHHHHHhhc
Q 023176 271 PEEKQEIIDSYKSKL 285 (286)
Q Consensus 271 ~~~k~~li~~yk~~~ 285 (286)
+-.+.++|.+|.+..
T Consensus 141 ~r~~~~li~~F~~~~ 155 (398)
T KOG4159|consen 141 NRLLCKLITKFLEGS 155 (398)
T ss_pred HHHHHHHHHHhhhhh
Confidence 556668888887653
No 60
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=8.6e-05 Score=68.01 Aligned_cols=50 Identities=30% Similarity=0.655 Sum_probs=37.6
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
+....+|.||+.+ ..-| +.| .|+|.||+-||.--.... .++|++||.++.
T Consensus 4 ~~~~~eC~IC~nt-~n~P-------v~l-~C~HkFCyiCiKGsy~nd----------k~~CavCR~pid 53 (324)
T KOG0824|consen 4 RTKKKECLICYNT-GNCP-------VNL-YCFHKFCYICIKGSYKND----------KKTCAVCRFPID 53 (324)
T ss_pred cccCCcceeeecc-CCcC-------ccc-cccchhhhhhhcchhhcC----------CCCCceecCCCC
Confidence 4567899999996 4444 677 599999999997532221 258999999875
No 61
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.35 E-value=2.8e-05 Score=68.83 Aligned_cols=56 Identities=34% Similarity=0.913 Sum_probs=46.1
Q ss_pred CCccccccccccCCCCCCCCCccCCCC----------------------------CCCcccccccC----C------CCC
Q 023176 3 KRVLCKFFAHGACLKGEHCEFSHDWKD----------------------------PPNNICTYYQK----G------FCS 44 (286)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~~~----------------------------~~~~~C~~f~~----G------~C~ 44 (286)
|+++|-.|+++.|..|+.|+|+|+... ....+|+||+. | .|+
T Consensus 84 K~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~CP 163 (299)
T COG5252 84 KTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWTCP 163 (299)
T ss_pred hhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceeeCC
Confidence 788999999999999999999998541 02358999973 3 499
Q ss_pred CC-CCcccCCCCCCC
Q 023176 45 YG-SRCRYEHVKPSR 58 (286)
Q Consensus 45 ~G-~~C~y~H~~~~~ 58 (286)
+| ++|.|.|..|..
T Consensus 164 ng~~~C~y~H~Lp~G 178 (299)
T COG5252 164 NGNMRCSYIHKLPDG 178 (299)
T ss_pred CCCceeeeeeccCcc
Confidence 98 679999999874
No 62
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=97.34 E-value=0.00048 Score=63.34 Aligned_cols=54 Identities=31% Similarity=0.741 Sum_probs=49.2
Q ss_pred Ccccccc-ccccCCCCCCCCCccCCCCCCCccccccc---CCCCCCCCCcccCCCCCC
Q 023176 4 RVLCKFF-AHGACLKGEHCEFSHDWKDPPNNICTYYQ---KGFCSYGSRCRYEHVKPS 57 (286)
Q Consensus 4 ~~~C~~f-~~G~C~~G~~C~f~H~~~~~~~~~C~~f~---~G~C~~G~~C~y~H~~~~ 57 (286)
...|++| +.|.|..|..|.|.|...+.....|.+|. .|+|.+|..|++.|....
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~ 191 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHIDPDSFAGNCDQYSGATYGFCPLGASCKFSHTLKR 191 (285)
T ss_pred CCCcccccccceeccCCCCCccccCcccccccccccCcccccccCCCCcccccccccc
Confidence 5689999 79999999999999987777889999999 699999999999999853
No 63
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=97.29 E-value=0.00091 Score=65.68 Aligned_cols=57 Identities=23% Similarity=0.563 Sum_probs=48.4
Q ss_pred CccccccccccCCCCCCCCCccCCCC-------CCCcccccccCCCCCCCCCcccCCCCCCCCCccc
Q 023176 4 RVLCKFFAHGACLKGEHCEFSHDWKD-------PPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAA 63 (286)
Q Consensus 4 ~~~C~~f~~G~C~~G~~C~f~H~~~~-------~~~~~C~~f~~G~C~~G~~C~y~H~~~~~~~~~~ 63 (286)
-++|.-|.+|.|++||.|.|.|..-. ++++.|++= |.|.. .-|.|+|....+....+
T Consensus 236 ~tpCPefrkG~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg--~~C~R-rvCfFAH~~eqLR~l~~ 299 (528)
T KOG1595|consen 236 STPCPEFRKGSCERGDSCEYAHGVFECWLHPARYRTRKCKDG--GYCPR-RVCFFAHSPEQLRPLPP 299 (528)
T ss_pred CccCcccccCCCCCCCccccccceehhhcCHHHhccccccCC--CCCcc-ceEeeecChHHhcccCC
Confidence 57899999999999999999998553 688999986 99994 88999999988765554
No 64
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.13 E-value=0.0002 Score=66.42 Aligned_cols=59 Identities=27% Similarity=0.580 Sum_probs=45.8
Q ss_pred HhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCce
Q 023176 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVI 266 (286)
Q Consensus 189 ~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~ 266 (286)
.+.....+|.+|-..+ .++ .+++.|-|+||.+||.+..... +.||.|........|..+
T Consensus 10 ~~~n~~itC~LC~GYl-iDA-------TTI~eCLHTFCkSCivk~l~~~-----------~~CP~C~i~ih~t~pl~n 68 (331)
T KOG2660|consen 10 TELNPHITCRLCGGYL-IDA-------TTITECLHTFCKSCIVKYLEES-----------KYCPTCDIVIHKTHPLLN 68 (331)
T ss_pred hhcccceehhhcccee-ecc-------hhHHHHHHHHHHHHHHHHHHHh-----------ccCCccceeccCcccccc
Confidence 3556689999999964 455 3566899999999999888653 599999998876655544
No 65
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.03 E-value=0.00025 Score=72.08 Aligned_cols=70 Identities=23% Similarity=0.390 Sum_probs=48.7
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCce-----ee
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVI-----WY 268 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~-----~~ 268 (286)
...|+||+-...+.- -+.-..|+|.||..||..|-...+ +||+||..|..|++..+ ||
T Consensus 123 ~~~CP~Ci~s~~DqL------~~~~k~c~H~FC~~Ci~sWsR~aq-----------TCPiDR~EF~~v~V~eS~~~~~~v 185 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQL------EESEKHTAHYFCEECVGSWSRCAQ-----------TCPVDRGEFGEVKVLESTGIEANV 185 (1134)
T ss_pred hhhhhHHHHHHHHHh------hccccccccccHHHHhhhhhhhcc-----------cCchhhhhhheeeeecccccccee
Confidence 345999998644422 133336999999999999987654 99999999998887654 22
Q ss_pred --CCcHHHHHHHHH
Q 023176 269 --YTPEEKQEIIDS 280 (286)
Q Consensus 269 --~~~~~k~~li~~ 280 (286)
..-+|++.+++.
T Consensus 186 R~lP~EEs~~~~e~ 199 (1134)
T KOG0825|consen 186 RCLPSEESENILEK 199 (1134)
T ss_pred Eecchhhhhhhhhh
Confidence 223566665553
No 66
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.98 E-value=0.00046 Score=48.52 Aligned_cols=47 Identities=19% Similarity=0.494 Sum_probs=31.2
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccC
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI 253 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~ 253 (286)
....+..|+|-+. ++++| +.-..|+|+|-.+-|.+|.+.+. ...||+
T Consensus 7 ~~~~~~~CPiT~~-~~~~P-------V~s~~C~H~fek~aI~~~i~~~~---------~~~CPv 53 (57)
T PF11789_consen 7 GGTISLKCPITLQ-PFEDP-------VKSKKCGHTFEKEAILQYIQRNG---------SKRCPV 53 (57)
T ss_dssp SSB--SB-TTTSS-B-SSE-------EEESSS--EEEHHHHHHHCTTTS----------EE-SC
T ss_pred ccEeccCCCCcCC-hhhCC-------cCcCCCCCeecHHHHHHHHHhcC---------CCCCCC
Confidence 3456789999999 68888 66668999999999999994332 368998
No 67
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=96.97 E-value=0.00061 Score=66.87 Aligned_cols=52 Identities=27% Similarity=0.495 Sum_probs=40.8
Q ss_pred CCccccccccccCCCCCCCCCccC-CCC---------CCCcccccccCCCCCCCCCcccCCCCCC
Q 023176 3 KRVLCKFFAHGACLKGEHCEFSHD-WKD---------PPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (286)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~-~~~---------~~~~~C~~f~~G~C~~G~~C~y~H~~~~ 57 (286)
|+..|. ++.|.-+-.|+|.|. .++ +....|.-|.+|.|..||.|-|.|...+
T Consensus 200 Kir~C~---R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHgvfE 261 (528)
T KOG1595|consen 200 KIRRCS---RPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHGVFE 261 (528)
T ss_pred eecccC---CccCCCcccCCccCCCcccccCCcccccccCccCcccccCCCCCCCccccccceeh
Confidence 555554 347888899999994 332 2356899999999999999999999854
No 68
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00045 Score=53.71 Aligned_cols=31 Identities=32% Similarity=0.808 Sum_probs=26.4
Q ss_pred CCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 219 SECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 219 ~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
-.|+|.|.+-||.+|.++++ .||+|.+.-.|
T Consensus 79 G~CNHaFH~hCisrWlktr~-----------vCPLdn~eW~~ 109 (114)
T KOG2930|consen 79 GVCNHAFHFHCISRWLKTRN-----------VCPLDNKEWVF 109 (114)
T ss_pred eecchHHHHHHHHHHHhhcC-----------cCCCcCcceeE
Confidence 36999999999999999875 89999876543
No 69
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0004 Score=65.67 Aligned_cols=51 Identities=31% Similarity=0.878 Sum_probs=38.6
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcc
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~ 257 (286)
...|.||-| .+. ..+-.+-+..|||+|...|+.+|...... .+.||+||..
T Consensus 4 ~A~C~Ic~d-~~p----~~~~l~~i~~cGhifh~~cl~qwfe~~Ps--------~R~cpic~ik 54 (465)
T KOG0827|consen 4 MAECHICID-GRP----NDHELGPIGTCGHIFHTTCLTQWFEGDPS--------NRGCPICQIK 54 (465)
T ss_pred cceeeEecc-CCc----cccccccccchhhHHHHHHHHHHHccCCc--------cCCCCceeec
Confidence 467999966 442 34566777679999999999999976432 2799999943
No 70
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00021 Score=52.58 Aligned_cols=57 Identities=23% Similarity=0.630 Sum_probs=37.4
Q ss_pred cccccccccccccCcc-----cc-ccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 194 EIECSVCLDRVLSKPT-----AA-ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~-----~~-~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
+.+|+||.-. |+-.= |+ +-.+ ++--|.|.|..-||.+|...+... ..||+||+.+.+
T Consensus 20 ~e~CGiCRm~-Fdg~Cp~Ck~PgDdCPL-v~G~C~h~fh~hCI~~wl~~~tsq--------~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 20 DETCGICRMP-FDGCCPDCKLPGDDCPL-VWGYCLHAFHAHCILKWLNTPTSQ--------GQCPMCRQTWQF 82 (84)
T ss_pred CCccceEecc-cCCcCCCCcCCCCCCcc-HHHHHHHHHHHHHHHHHhcCcccc--------ccCCcchheeEe
Confidence 3478888763 43110 11 1122 333599999999999999875432 499999998764
No 71
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.80 E-value=0.00078 Score=36.74 Aligned_cols=19 Identities=47% Similarity=1.099 Sum_probs=13.8
Q ss_pred cccccccccCCCCCCCCCccC
Q 023176 6 LCKFFAHGACLKGEHCEFSHD 26 (286)
Q Consensus 6 ~C~~f~~G~C~~G~~C~f~H~ 26 (286)
+|+||.+ |++|++|.|+|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 4777766 887778888773
No 72
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.001 Score=62.49 Aligned_cols=49 Identities=31% Similarity=0.725 Sum_probs=38.5
Q ss_pred cCcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
....+|.|||...-+- .+|| |.|. .|.+|-...|-.. ..||+||..+..
T Consensus 288 ~~gkeCVIClse~rdt--------~vLP-CRHLCLCs~Ca~~Lr~q~-----------n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDT--------VVLP-CRHLCLCSGCAKSLRYQT-----------NNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcce--------EEec-chhhehhHhHHHHHHHhh-----------cCCCccccchHh
Confidence 3368999999974432 7886 9995 7999999998433 489999998763
No 73
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.68 E-value=0.00079 Score=65.00 Aligned_cols=49 Identities=31% Similarity=0.863 Sum_probs=39.9
Q ss_pred ccCcccccccccccccCccccccceeec-CCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLL-SECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l-~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
..+++.|+||+. ++.+| +. ..|||.||..||.+|.... -.||.||....
T Consensus 18 ~~~~l~C~~C~~-vl~~p--------~~~~~cgh~fC~~C~~~~~~~~-----------~~cp~~~~~~~ 67 (391)
T KOG0297|consen 18 LDENLLCPICMS-VLRDP--------VQTTTCGHRFCAGCLLESLSNH-----------QKCPVCRQELT 67 (391)
T ss_pred CcccccCccccc-cccCC--------CCCCCCCCcccccccchhhccC-----------cCCcccccccc
Confidence 456799999999 56666 33 3799999999999999763 38999988764
No 74
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.64 E-value=0.0014 Score=68.13 Aligned_cols=60 Identities=28% Similarity=0.666 Sum_probs=43.5
Q ss_pred HHhccCccccccccccccc---CccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176 188 ALRRSQEIECSVCLDRVLS---KPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (286)
Q Consensus 188 ~~~~~~~~~C~IC~e~i~~---~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~ 261 (286)
..+-+...+|+||... +. ..-|+. .-+.|.|.|..+||-+|..+... .+||+||..+.|+
T Consensus 1463 ~~~fsG~eECaICYsv-L~~vdr~lPsk----rC~TCknKFH~~CLyKWf~Ss~~---------s~CPlCRseitfv 1525 (1525)
T COG5219 1463 DEKFSGHEECAICYSV-LDMVDRSLPSK----RCATCKNKFHTRCLYKWFASSAR---------SNCPLCRSEITFV 1525 (1525)
T ss_pred hhhcCCcchhhHHHHH-HHHHhccCCcc----ccchhhhhhhHHHHHHHHHhcCC---------CCCCccccccccC
Confidence 4466778999999984 44 111222 22359999999999999987653 5999999887664
No 75
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.61 E-value=0.0021 Score=43.73 Aligned_cols=44 Identities=23% Similarity=0.644 Sum_probs=31.1
Q ss_pred cccccccccccCccccccceeecCCCC-----CcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCC
Q 023176 196 ECSVCLDRVLSKPTAAERKFGLLSECD-----HPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255 (286)
Q Consensus 196 ~C~IC~e~i~~~~~~~~~~~~~l~~C~-----H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR 255 (286)
.|-||++. .+. +.. -+.| |. |.+..+|+.+|...+.. .+||+|+
T Consensus 1 ~CrIC~~~-~~~----~~~-l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~---------~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDE----GDP-LVSP-CRCKGSLKYVHQECLERWINESGN---------KTCEICK 49 (49)
T ss_pred CccCCCCC-CCC----CCe-eEec-cccCCchhHHHHHHHHHHHHHcCC---------CcCCCCC
Confidence 48899981 221 122 3554 85 99999999999987642 5999995
No 76
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.00091 Score=65.04 Aligned_cols=54 Identities=26% Similarity=0.685 Sum_probs=37.5
Q ss_pred cccccccccccccCcccc---------ccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 194 EIECSVCLDRVLSKPTAA---------ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~---------~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
...|+|||..|--.-+.+ .|.|.+. .|.|+|...|+.+|+..- ...||.||.+.
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~t-PC~HifH~~CL~~WMd~y----------kl~CPvCR~pL 633 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLT-PCHHIFHRQCLLQWMDTY----------KLICPVCRCPL 633 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhcccccc-chHHHHHHHHHHHHHhhh----------cccCCccCCCC
Confidence 467999998653211111 1235444 599999999999999743 24899999874
No 77
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.0022 Score=61.10 Aligned_cols=53 Identities=30% Similarity=0.753 Sum_probs=42.7
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
..+|+||||. ++ ++.+.+.++| -|||.|=.+||+.|.- + ..++.||+|..+..
T Consensus 4 g~tcpiclds-~~--~~g~hr~vsl-~cghlFgs~cie~wl~-k--------~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 4 GTTCPICLDS-YT--TAGNHRIVSL-QCGHLFGSQCIEKWLG-K--------KTKMQCPLCSGKAT 56 (463)
T ss_pred cccCceeeee-ee--ecCceEEeee-cccccccHHHHHHHHh-h--------hhhhhCcccCChhH
Confidence 4689999996 44 3578888888 5999999999999994 2 23579999987764
No 78
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=96.53 E-value=0.00093 Score=63.53 Aligned_cols=26 Identities=46% Similarity=0.893 Sum_probs=23.3
Q ss_pred CccccccccccCCCCCCCCCccCCCC
Q 023176 4 RVLCKFFAHGACLKGEHCEFSHDWKD 29 (286)
Q Consensus 4 ~~~C~~f~~G~C~~G~~C~f~H~~~~ 29 (286)
..+|.||+.|.|++|.+|+|+|.+..
T Consensus 140 MkpC~ffLeg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 140 MKPCKFFLEGRCRFGENCRFSHGLDV 165 (486)
T ss_pred hccchHhhccccccCcccccccCccc
Confidence 46999999999999999999998664
No 79
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=96.52 E-value=0.0011 Score=64.56 Aligned_cols=56 Identities=32% Similarity=0.813 Sum_probs=44.3
Q ss_pred Cccccccccc---cCCCCCCCCCccCCCCC---C----Cccccccc-CCCCCCCCCcccC--CCCCCCC
Q 023176 4 RVLCKFFAHG---ACLKGEHCEFSHDWKDP---P----NNICTYYQ-KGFCSYGSRCRYE--HVKPSRS 59 (286)
Q Consensus 4 ~~~C~~f~~G---~C~~G~~C~f~H~~~~~---~----~~~C~~f~-~G~C~~G~~C~y~--H~~~~~~ 59 (286)
..+|.-..+| .|.+|++|+|.||++.. + .+-|.+|- .|+|++|-.|||+ |......
T Consensus 76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~ 144 (614)
T KOG2333|consen 76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPYGFKCRFLGAHLDIEGN 144 (614)
T ss_pred hccChHhhcCCCccCcccccccccccHHHHHhccCcccCCccceeeccccCCccceeehhhcccCcccc
Confidence 5689877776 69999999999997641 1 36799998 7999999999996 5554433
No 80
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.49 E-value=0.0043 Score=57.02 Aligned_cols=45 Identities=31% Similarity=0.703 Sum_probs=37.2
Q ss_pred ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcc
Q 023176 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (286)
Q Consensus 195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~ 257 (286)
+.|+.|-. ++..| .-.+.|+|.||-.||..-.-..+ ..||.|...
T Consensus 275 LkCplc~~-Llrnp-------~kT~cC~~~fc~eci~~al~dsD----------f~CpnC~rk 319 (427)
T COG5222 275 LKCPLCHC-LLRNP-------MKTPCCGHTFCDECIGTALLDSD----------FKCPNCSRK 319 (427)
T ss_pred ccCcchhh-hhhCc-------ccCccccchHHHHHHhhhhhhcc----------ccCCCcccc
Confidence 89999999 67776 55579999999999998776555 489999874
No 81
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.47 E-value=0.0015 Score=35.61 Aligned_cols=19 Identities=37% Similarity=1.053 Sum_probs=16.3
Q ss_pred CChhhhcCCCCCCCCCcccCC
Q 023176 133 ICSFAAAGNCPRGEKCPHIHG 153 (286)
Q Consensus 133 lC~y~~~G~C~~Gd~C~y~Hg 153 (286)
.|+|+.. |.+|++|.|.||
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 3787766 999999999997
No 82
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=96.39 E-value=0.0049 Score=56.76 Aligned_cols=29 Identities=31% Similarity=0.726 Sum_probs=23.9
Q ss_pred CCCccCC-hhhhcCCCCCCCCCcccCCCCC
Q 023176 128 PADRSIC-SFAAAGNCPRGEKCPHIHGDTC 156 (286)
Q Consensus 128 ~~~~~lC-~y~~~G~C~~Gd~C~y~Hg~~c 156 (286)
+.++..| -|-.-|.|+||.+|.|.||+.-
T Consensus 271 ~frTePcinwe~sGyc~yg~Rc~F~hgd~~ 300 (351)
T COG5063 271 NFRTEPCINWEKSGYCPYGLRCCFKHGDDS 300 (351)
T ss_pred ccccCCccchhhcccCccccccccccCChh
Confidence 3456778 5669999999999999999863
No 83
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=96.23 E-value=0.0023 Score=60.96 Aligned_cols=25 Identities=28% Similarity=0.876 Sum_probs=23.0
Q ss_pred CcccccccCCCCCCCCCcccCCCCC
Q 023176 32 NNICTYYQKGFCSYGSRCRYEHVKP 56 (286)
Q Consensus 32 ~~~C~~f~~G~C~~G~~C~y~H~~~ 56 (286)
..+|.||+.|.|+||.+|||+|...
T Consensus 140 MkpC~ffLeg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 140 MKPCKFFLEGRCRFGENCRFSHGLD 164 (486)
T ss_pred hccchHhhccccccCcccccccCcc
Confidence 5689999999999999999999874
No 84
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.09 E-value=0.0053 Score=58.34 Aligned_cols=53 Identities=30% Similarity=0.718 Sum_probs=41.3
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
..++-|+.|=|.|=.|+ .++--|| |.|+|...|+.+....+. .++||.||+.-
T Consensus 363 e~~L~Cg~CGe~~Glk~----e~LqALp-CsHIfH~rCl~e~L~~n~---------~rsCP~Crklr 415 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKN----ERLQALP-CSHIFHLRCLQEILENNG---------TRSCPNCRKLR 415 (518)
T ss_pred HHhhhhhhhhhhhcCCc----ccccccc-hhHHHHHHHHHHHHHhCC---------CCCCccHHHHH
Confidence 44678999999877776 3455675 999999999999886543 37999999543
No 85
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.006 Score=55.49 Aligned_cols=55 Identities=25% Similarity=0.552 Sum_probs=39.6
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~ 262 (286)
.+.+.+|++|-+. -.-| +.+. .|+|+||.-||.+-+.... -.+||.|-....-+.
T Consensus 236 ~t~~~~C~~Cg~~-PtiP------~~~~-~C~HiyCY~Ci~ts~~~~a---------sf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 236 GTSDTECPVCGEP-PTIP------HVIG-KCGHIYCYYCIATSRLWDA---------SFTCPLCGENVEPLQ 290 (298)
T ss_pred ccCCceeeccCCC-CCCC------eeec-cccceeehhhhhhhhcchh---------hcccCccCCCCcchh
Confidence 4568999999995 3334 3555 5999999999988664322 259999988765443
No 86
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.79 E-value=0.0029 Score=68.19 Aligned_cols=84 Identities=23% Similarity=0.509 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcC
Q 023176 170 EEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALR 249 (286)
Q Consensus 170 ~~~~e~~~~~~~~~~~~~~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~ 249 (286)
-..++|--.|+-- .-++..+..|..|-||+..-+..+. .|-.+|+|+|.+.|.+.-..++.. |....-.-.
T Consensus 3464 vkNEE~CLPCl~C--dks~tkQD~DDmCmICFTE~L~AAP------~IqL~C~HiFHlqC~R~vLE~RW~-GPRItF~Fi 3534 (3738)
T KOG1428|consen 3464 VKNEEHCLPCLHC--DKSATKQDADDMCMICFTEALSAAP------AIQLDCSHIFHLQCCRRVLENRWL-GPRITFGFI 3534 (3738)
T ss_pred ccchhhccccccc--ChhhhhcccCceEEEEehhhhCCCc------ceecCCccchhHHHHHHHHHhccc-CCeeEEeee
Confidence 3455555555431 1233456678999999986665432 566689999999998764443321 110111125
Q ss_pred cccCCCccccccc
Q 023176 250 ACPICRKLSYFVI 262 (286)
Q Consensus 250 ~CP~CR~~~~~~~ 262 (286)
+||+|..+..-++
T Consensus 3535 sCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3535 SCPICKNKINHIV 3547 (3738)
T ss_pred ecccccchhhhHH
Confidence 9999999876444
No 87
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.78 E-value=0.0041 Score=59.24 Aligned_cols=47 Identities=30% Similarity=0.798 Sum_probs=35.4
Q ss_pred ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
..|-||-|. +|. +-+..|||..|..|+..|...... -+||.||-...
T Consensus 370 eLCKICaen--dKd-------vkIEPCGHLlCt~CLa~WQ~sd~g---------q~CPFCRcEIK 416 (563)
T KOG1785|consen 370 ELCKICAEN--DKD-------VKIEPCGHLLCTSCLAAWQDSDEG---------QTCPFCRCEIK 416 (563)
T ss_pred HHHHHhhcc--CCC-------cccccccchHHHHHHHhhcccCCC---------CCCCceeeEec
Confidence 449999994 443 344469999999999999854321 48999998775
No 88
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.57 E-value=0.013 Score=60.53 Aligned_cols=63 Identities=29% Similarity=0.679 Sum_probs=45.2
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~ 261 (286)
....-.+|.||+|.|-.. ...|.-- +|-|+|.+.||++|..+.+..+ ...-.||.|+..+..+
T Consensus 187 l~~~~yeCmIC~e~I~~t----~~~WSC~-sCYhVFHl~CI~~WArs~ek~~----~~~WrCP~Cqsv~~~~ 249 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRT----APVWSCK-SCYHVFHLNCIKKWARSSEKTG----QDGWRCPACQSVSKTV 249 (950)
T ss_pred HhcCceEEEEeeeecccc----CCceecc-hhhhhhhHHHHHHHHHHhhhcc----CccccCCcccchhccC
Confidence 334568999999987553 2455556 4999999999999998743322 2346899999766543
No 89
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.42 E-value=0.0063 Score=59.87 Aligned_cols=54 Identities=31% Similarity=0.645 Sum_probs=40.1
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
...+.+|++|-| .-++ .+.+.|-|.||..||.++...--. .. -.+||.|-....
T Consensus 533 nk~~~~C~lc~d-~aed--------~i~s~ChH~FCrlCi~eyv~~f~~----~~--nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 533 NKGEVECGLCHD-PAED--------YIESSCHHKFCRLCIKEYVESFME----NN--NVTCPVCHIGLS 586 (791)
T ss_pred ccCceeecccCC-hhhh--------hHhhhhhHHHHHHHHHHHHHhhhc----cc--CCCCcccccccc
Confidence 355789999999 4655 366689999999999998865211 11 269999987654
No 90
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.78 E-value=0.028 Score=38.01 Aligned_cols=47 Identities=23% Similarity=0.647 Sum_probs=23.0
Q ss_pred ccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 197 C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
|++|++.+ +. .++.|.-= .|++-.|+.|...-+...+ ..||-||+.+
T Consensus 1 cp~C~e~~-d~---~d~~~~PC-~Cgf~IC~~C~~~i~~~~~----------g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEEL-DE---TDKDFYPC-ECGFQICRFCYHDILENEG----------GRCPGCREPY 47 (48)
T ss_dssp -TTTS-B---C---CCTT--SS-TTS----HHHHHHHTTSS-----------SB-TTT--B-
T ss_pred CCCccccc-cc---CCCccccC-cCCCcHHHHHHHHHHhccC----------CCCCCCCCCC
Confidence 78999975 32 34555455 5999999999877765322 4999999875
No 91
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.016 Score=54.65 Aligned_cols=49 Identities=33% Similarity=0.635 Sum_probs=36.4
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p 263 (286)
+....|.||++..++ +..+| |||+-| |+.....- ..||+||.....+++
T Consensus 303 ~~p~lcVVcl~e~~~--------~~fvp-cGh~cc--ct~cs~~l------------~~CPvCR~rI~~~~k 351 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS--------AVFVP-CGHVCC--CTLCSKHL------------PQCPVCRQRIRLVRK 351 (355)
T ss_pred CCCCceEEecCCccc--------eeeec-CCcEEE--chHHHhhC------------CCCchhHHHHHHHHH
Confidence 456789999997554 36775 999977 88766542 369999998765543
No 92
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.26 E-value=0.024 Score=53.18 Aligned_cols=59 Identities=20% Similarity=0.561 Sum_probs=42.6
Q ss_pred HHHHhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176 186 LEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (286)
Q Consensus 186 ~~~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~ 262 (286)
+.+.+++++..|-||.+.+. |..+..|+|-.|.-|-...|.-=. .+.||+||+...-|+
T Consensus 53 SaddtDEen~~C~ICA~~~T---------Ys~~~PC~H~~CH~Ca~RlRALY~---------~K~C~~CrTE~e~V~ 111 (493)
T COG5236 53 SADDTDEENMNCQICAGSTT---------YSARYPCGHQICHACAVRLRALYM---------QKGCPLCRTETEAVV 111 (493)
T ss_pred cccccccccceeEEecCCce---------EEEeccCCchHHHHHHHHHHHHHh---------ccCCCccccccceEE
Confidence 34457778899999999643 344445999999999866654311 269999999887544
No 93
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.0074 Score=55.34 Aligned_cols=44 Identities=34% Similarity=0.763 Sum_probs=31.1
Q ss_pred cccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~ 261 (286)
+-.|.||||...+- .+| .|||. -|..|-... ..||+||+....|
T Consensus 300 ~~LC~ICmDaP~DC--------vfL-eCGHmVtCt~CGkrm---------------~eCPICRqyi~rv 344 (350)
T KOG4275|consen 300 RRLCAICMDAPRDC--------VFL-ECGHMVTCTKCGKRM---------------NECPICRQYIVRV 344 (350)
T ss_pred HHHHHHHhcCCcce--------EEe-ecCcEEeehhhcccc---------------ccCchHHHHHHHH
Confidence 56799999965442 567 59995 477775432 3799999875443
No 94
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.019 Score=52.14 Aligned_cols=57 Identities=26% Similarity=0.615 Sum_probs=39.9
Q ss_pred cCcccccccccccccCcc---ccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 192 SQEIECSVCLDRVLSKPT---AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~---~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
.+|-.|.||-..+...-+ --|..| .| .|+|+|...||+-|---.. .-+||-|+++++
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty-~L-sCnHvFHEfCIrGWcivGK---------kqtCPYCKekVd 281 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTY-KL-SCNHVFHEFCIRGWCIVGK---------KQTCPYCKEKVD 281 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhhe-ee-ecccchHHHhhhhheeecC---------CCCCchHHHHhh
Confidence 557889999886554321 111233 45 4999999999999975421 249999999876
No 95
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.034 Score=53.35 Aligned_cols=58 Identities=26% Similarity=0.651 Sum_probs=40.5
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
.-..|.||++.-+ +...|..|| |+|+||.+|+..+....-..+. . ....||.+.-.+.
T Consensus 183 slf~C~ICf~e~~-----G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~-v--~~l~Cp~~~C~~~ 240 (445)
T KOG1814|consen 183 SLFDCCICFEEQM-----GQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQ-V--SCLKCPDPKCGSV 240 (445)
T ss_pred hcccceeeehhhc-----Ccceeeecc-cchHHHHHHHHHHHHHhhhcce-e--eeecCCCCCCccc
Confidence 3578999999533 235677886 9999999999998765433221 1 1358999876653
No 96
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.66 E-value=0.047 Score=52.70 Aligned_cols=59 Identities=25% Similarity=0.578 Sum_probs=39.0
Q ss_pred cccccccc-cccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccccc
Q 023176 194 EIECSVCL-DRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (286)
Q Consensus 194 ~~~C~IC~-e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p 263 (286)
..+|+||+ +.+. .+..|-++ .|+|-||..|..+....+.. .+....||.=+=.+.+...
T Consensus 146 ~~~C~iC~~e~~~-----~~~~f~~~-~C~H~fC~~C~k~~iev~~~-----~~~~~~C~~~~C~~~l~~~ 205 (384)
T KOG1812|consen 146 KEECGICFVEDPE-----AEDMFSVL-KCGHRFCKDCVKQHIEVKLL-----SGTVIRCPHDGCESRLTLE 205 (384)
T ss_pred cccCccCcccccc-----HhhhHHHh-cccchhhhHHhHHHhhhhhc-----cCCCccCCCCCCCccCCHH
Confidence 57899999 5322 23455555 79999999999999887643 2345688754444443333
No 97
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.58 E-value=0.13 Score=46.95 Aligned_cols=52 Identities=21% Similarity=0.491 Sum_probs=41.5
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
......|||.... ++. ..+|+.|-.|||+|+..+|.+-. .. ..||+|-++|.
T Consensus 110 ~~~~~~CPvt~~~-~~~----~~~fv~l~~cG~V~s~~alke~k--~~----------~~Cp~c~~~f~ 161 (260)
T PF04641_consen 110 SEGRFICPVTGKE-FNG----KHKFVYLRPCGCVFSEKALKELK--KS----------KKCPVCGKPFT 161 (260)
T ss_pred CCceeECCCCCcc-cCC----ceeEEEEcCCCCEeeHHHHHhhc--cc----------ccccccCCccc
Confidence 4556899999985 432 35889998999999999999985 11 37999999986
No 98
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.53 E-value=0.063 Score=43.98 Aligned_cols=65 Identities=22% Similarity=0.646 Sum_probs=42.3
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhh-CCCCCCCcCCCcCcccCCCccccccccCceeeC
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSS-SPTSGMDVNTALRACPICRKLSYFVIPSVIWYY 269 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~-~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~ 269 (286)
..+.+|.||+..-|. .+|||+ |..|-...-.. .....+.++++.-.|-+||.....+..+.-|+.
T Consensus 63 ~ddatC~IC~KTKFA------------DG~GH~-C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf~ 128 (169)
T KOG3799|consen 63 GDDATCGICHKTKFA------------DGCGHN-CSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWFY 128 (169)
T ss_pred CcCcchhhhhhcccc------------cccCcc-cchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHHH
Confidence 568999999997443 368884 45553222111 111112245667899999999988888888875
No 99
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=93.12 E-value=0.031 Score=54.78 Aligned_cols=25 Identities=36% Similarity=0.874 Sum_probs=21.0
Q ss_pred CcccccccCC---CCCCCCCcccCCCCC
Q 023176 32 NNICTYYQKG---FCSYGSRCRYEHVKP 56 (286)
Q Consensus 32 ~~~C~~f~~G---~C~~G~~C~y~H~~~ 56 (286)
..+|.-...| .|.||++|+|.|...
T Consensus 76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ 103 (614)
T KOG2333|consen 76 NRLCPSLIQGDISKCSFGDNCRFVHDIE 103 (614)
T ss_pred hccChHhhcCCCccCcccccccccccHH
Confidence 4679877766 699999999999873
No 100
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=0.099 Score=49.33 Aligned_cols=54 Identities=22% Similarity=0.521 Sum_probs=41.2
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p 263 (286)
..++|..|+||.-...+. ++. .|+|--|.+||.+..-+. +.|=.|++....++-
T Consensus 418 p~sEd~lCpICyA~pi~A--------vf~-PC~H~SC~~CI~qHlmN~-----------k~CFfCktTv~~~~l 471 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPINA--------VFA-PCSHRSCYGCITQHLMNC-----------KRCFFCKTTVIDVIL 471 (489)
T ss_pred CCcccccCcceecccchh--------hcc-CCCCchHHHHHHHHHhcC-----------CeeeEecceeeehhc
Confidence 458899999999864431 445 599999999999887544 479999988765443
No 101
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=93.06 E-value=0.054 Score=30.89 Aligned_cols=19 Identities=42% Similarity=1.025 Sum_probs=9.3
Q ss_pred cccccccc-cCCCCCCCCCcc
Q 023176 6 LCKFFAHG-ACLKGEHCEFSH 25 (286)
Q Consensus 6 ~C~~f~~G-~C~~G~~C~f~H 25 (286)
+|.|.+.| .|.. ++|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 45555544 5542 4555554
No 102
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.03 Score=51.82 Aligned_cols=34 Identities=29% Similarity=0.783 Sum_probs=26.2
Q ss_pred ceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 214 KFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 214 ~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
.||.+..|.|+||++|.+.-. .+.||.|-.++..
T Consensus 102 IYGRmIPCkHvFCl~CAr~~~-------------dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 102 IYGRMIPCKHVFCLECARSDS-------------DKICPLCDDRVQR 135 (389)
T ss_pred eeecccccchhhhhhhhhcCc-------------cccCcCcccHHHH
Confidence 567777899999999976432 2699999877653
No 103
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=92.95 E-value=0.035 Score=48.35 Aligned_cols=26 Identities=31% Similarity=1.077 Sum_probs=22.7
Q ss_pred Cccccccc-CCCCCCCCCcccCCCCCC
Q 023176 32 NNICTYYQ-KGFCSYGSRCRYEHVKPS 57 (286)
Q Consensus 32 ~~~C~~f~-~G~C~~G~~C~y~H~~~~ 57 (286)
..+|+.|. +|+|-|||.|+|+|.+.+
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D 167 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSD 167 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhh
Confidence 35799887 899999999999999864
No 104
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=92.85 E-value=0.071 Score=30.41 Aligned_cols=22 Identities=27% Similarity=0.967 Sum_probs=18.8
Q ss_pred cccccccCC-CCCCCCCcccCCCC
Q 023176 33 NICTYYQKG-FCSYGSRCRYEHVK 55 (286)
Q Consensus 33 ~~C~~f~~G-~C~~G~~C~y~H~~ 55 (286)
++|.|-++| .|. .+.|.|+|.+
T Consensus 1 ~lC~yEl~Gg~Cn-d~~C~~QHfr 23 (23)
T PF10650_consen 1 PLCPYELTGGVCN-DPDCEFQHFR 23 (23)
T ss_pred CCCccccCCCeeC-CCCCCccccC
Confidence 479999988 897 8899999963
No 105
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.85 E-value=0.057 Score=44.33 Aligned_cols=39 Identities=26% Similarity=0.744 Sum_probs=27.5
Q ss_pred cCccccccccccccc-CccccccceeecC-----CCCCcCcHHHHHHHHhh
Q 023176 192 SQEIECSVCLDRVLS-KPTAAERKFGLLS-----ECDHPFCISCIRNWRSS 236 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~-~~~~~~~~~~~l~-----~C~H~fC~~Ci~~w~~~ 236 (286)
+...+|.||++.|.+ +- + +.++ |=-|.||.+|+.+|...
T Consensus 24 ~~~~EC~IC~~~I~~~~G-----v-V~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDG-----V-VYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred ccCeeehhhhhhhhcCCC-----E-EEEecCCeehHHHHHHHHHHHHHHhh
Confidence 348999999999877 21 1 2232 22389999999999643
No 106
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=92.80 E-value=0.16 Score=42.76 Aligned_cols=13 Identities=38% Similarity=0.738 Sum_probs=10.9
Q ss_pred CcCcccCCCcccc
Q 023176 247 ALRACPICRKLSY 259 (286)
Q Consensus 247 ~~~~CP~CR~~~~ 259 (286)
....||+||-.+.
T Consensus 79 ~~L~CPLCRG~V~ 91 (162)
T PF07800_consen 79 PELACPLCRGEVK 91 (162)
T ss_pred ccccCccccCcee
Confidence 4679999999875
No 107
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.74 E-value=0.035 Score=49.72 Aligned_cols=46 Identities=30% Similarity=0.853 Sum_probs=32.3
Q ss_pred ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
+.|.-|.-. | +...|-++ .|.|+||..|...-.. ..||+||+....
T Consensus 4 VhCn~C~~~----~--~~~~f~LT-aC~HvfC~~C~k~~~~-------------~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 4 VHCNKCFRF----P--SQDPFFLT-ACRHVFCEPCLKASSP-------------DVCPLCKKSIRI 49 (233)
T ss_pred EEecccccc----C--CCCceeee-echhhhhhhhcccCCc-------------cccccccceeee
Confidence 457777763 2 24567666 7999999999764321 289999998653
No 108
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=92.60 E-value=0.045 Score=48.89 Aligned_cols=28 Identities=25% Similarity=0.755 Sum_probs=24.9
Q ss_pred CCCcccccccCCCCCCCCCcccCCCCCC
Q 023176 30 PPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (286)
Q Consensus 30 ~~~~~C~~f~~G~C~~G~~C~y~H~~~~ 57 (286)
.++.+|..|+.+.|..|+.|.|+|....
T Consensus 83 pK~~vcalF~~~~c~kg~~ckF~h~~ee 110 (299)
T COG5252 83 PKTVVCALFLNKTCAKGDACKFAHGKEE 110 (299)
T ss_pred chhHHHHHhccCccccCchhhhhcchHH
Confidence 4578999999999999999999999644
No 109
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.07 E-value=0.073 Score=36.94 Aligned_cols=46 Identities=30% Similarity=0.593 Sum_probs=33.2
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
.+..|-.|... -.+. .++ .|+|..|..|-.-|+.+ .||.|-+++.+
T Consensus 6 ~~~~~~~~~~~-~~~~-------~~~-pCgH~I~~~~f~~~rYn-------------gCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFV-GTKG-------TVL-PCGHLICDNCFPGERYN-------------GCPFCGTPFEF 51 (55)
T ss_pred cceeEEEcccc-cccc-------ccc-cccceeeccccChhhcc-------------CCCCCCCcccC
Confidence 34567777663 2332 455 59999999998888753 79999998764
No 110
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=91.99 E-value=0.071 Score=51.55 Aligned_cols=34 Identities=35% Similarity=0.870 Sum_probs=29.1
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHH
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~ 234 (286)
++++.|+||-. +|++| .||+ |+|..|..|.+...
T Consensus 2 eeelkc~vc~~-f~~ep-------iil~-c~h~lc~~ca~~~~ 35 (699)
T KOG4367|consen 2 EEELKCPVCGS-FYREP-------IILP-CSHNLCQACARNIL 35 (699)
T ss_pred cccccCceehh-hccCc-------eEee-cccHHHHHHHHhhc
Confidence 56899999999 79998 6885 99999999987643
No 111
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=0.061 Score=51.04 Aligned_cols=24 Identities=33% Similarity=0.960 Sum_probs=22.9
Q ss_pred ccccccccccCCCCCCCCCccCCC
Q 023176 5 VLCKFFAHGACLKGEHCEFSHDWK 28 (286)
Q Consensus 5 ~~C~~f~~G~C~~G~~C~f~H~~~ 28 (286)
.||+||..|.|++|+.|+|+|+..
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~ 32 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLP 32 (344)
T ss_pred hhhhhcccccccccceeeeeccCc
Confidence 799999999999999999999876
No 112
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.55 E-value=0.32 Score=46.47 Aligned_cols=96 Identities=16% Similarity=0.315 Sum_probs=50.6
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHH-hccCccccccccccccc----C----ccccccceeecCCCCCcC-----cHHH
Q 023176 164 LHPFRPEEREEHMKSCEKKQKHLEAL-RRSQEIECSVCLDRVLS----K----PTAAERKFGLLSECDHPF-----CISC 229 (286)
Q Consensus 164 l~p~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~C~IC~e~i~~----~----~~~~~~~~~~l~~C~H~f-----C~~C 229 (286)
+|.+-.|...+..++-+++....... ..++...|-=||...-+ | .+..+..+.-.+.|...| |++|
T Consensus 240 i~~tl~drF~e~F~~~V~~Np~y~~~~~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~C 319 (358)
T PF10272_consen 240 IHQTLSDRFVEAFKEQVEQNPRYSYPESGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLEC 319 (358)
T ss_pred ECCCHHHHHHHHHHHHHHhCCccccCCCccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHH
Confidence 34444444444444433333222222 44667888889974211 0 000111112233566666 6999
Q ss_pred HHHHHhhCCCCCCCc--CCCcCcccCCCcccc
Q 023176 230 IRNWRSSSPTSGMDV--NTALRACPICRKLSY 259 (286)
Q Consensus 230 i~~w~~~~~~~~~~~--~~~~~~CP~CR~~~~ 259 (286)
+-+|..++|+..-.+ -...-.||+||+.|-
T Consensus 320 m~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 320 MGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred HHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 999999887533111 123469999999874
No 113
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=0.21 Score=46.06 Aligned_cols=54 Identities=26% Similarity=0.624 Sum_probs=37.7
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
-..|.||-+. |+.-+. ++.=.+| .|||+||..|+........ ..||.||.....
T Consensus 3 ~~~c~~c~~~-~s~~~~-~~~p~~l-~c~h~~c~~c~~~l~~~~~----------i~cpfcR~~~~~ 56 (296)
T KOG4185|consen 3 FPECEICNED-YSSEDG-DHIPRVL-KCGHTICQNCASKLLGNSR----------ILCPFCRETTEI 56 (296)
T ss_pred CCceeecCcc-ccccCc-ccCCccc-ccCceehHhHHHHHhcCce----------eeccCCCCcccC
Confidence 3679999995 443322 2222355 4999999999998876532 478999998743
No 114
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.99 E-value=0.19 Score=45.29 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=43.0
Q ss_pred HhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 189 ~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
+..++-..|+||.+.+.+ .+ ..++|..|||+||.+|..+.+.. + +.||+|-.+..
T Consensus 216 ~a~s~ryiCpvtrd~LtN-t~----~ca~Lr~sg~Vv~~ecvEklir~-D----------~v~pv~d~plk 270 (303)
T KOG3039|consen 216 IAASKRYICPVTRDTLTN-TT----PCAVLRPSGHVVTKECVEKLIRK-D----------MVDPVTDKPLK 270 (303)
T ss_pred hhhccceecccchhhhcC-cc----ceEEeccCCcEeeHHHHHHhccc-c----------ccccCCCCcCc
Confidence 345567899999996554 32 55888899999999999998853 2 58999988764
No 115
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.92 E-value=0.3 Score=44.98 Aligned_cols=50 Identities=28% Similarity=0.626 Sum_probs=39.8
Q ss_pred cccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 196 ~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
.|++|-..+|-.|. .+.++..|+|..|-+|........+ ..||.|-+...
T Consensus 2 ~Cp~CKt~~Y~np~----lk~~in~C~H~lCEsCvd~iF~~g~----------~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPD----LKLMINECGHRLCESCVDRIFSLGP----------AQCPECMVILR 51 (300)
T ss_pred CCcccccceecCcc----ceeeeccccchHHHHHHHHHHhcCC----------CCCCcccchhh
Confidence 59999988888772 4455557999999999999887654 48999987653
No 116
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.34 E-value=0.78 Score=40.93 Aligned_cols=75 Identities=21% Similarity=0.460 Sum_probs=47.0
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~ 271 (286)
.-+-.|..|-..+-+-.+ .-| .|-|.|..+|+.+|..+-.. ...-.-..||-|-+.+ .|..-.|..
T Consensus 48 DY~pNC~LC~t~La~gdt------~RL-vCyhlfHW~ClneraA~lPa---nTAPaGyqCP~Cs~ei---FPp~NlvsP- 113 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDT------TRL-VCYHLFHWKCLNERAANLPA---NTAPAGYQCPCCSQEI---FPPINLVSP- 113 (299)
T ss_pred CCCCCCceeCCccccCcc------eee-hhhhhHHHHHhhHHHhhCCC---cCCCCcccCCCCCCcc---CCCccccch-
Confidence 346789999886554331 345 79999999999999875221 1122337999998764 444443433
Q ss_pred HHHHHHHHHHHhhc
Q 023176 272 EEKQEIIDSYKSKL 285 (286)
Q Consensus 272 ~~k~~li~~yk~~~ 285 (286)
++++.|+.|
T Consensus 114 -----va~aLre~L 122 (299)
T KOG3970|consen 114 -----VAEALREQL 122 (299)
T ss_pred -----hHHHHHHHH
Confidence 444444444
No 117
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.92 E-value=0.18 Score=45.59 Aligned_cols=76 Identities=20% Similarity=0.387 Sum_probs=51.3
Q ss_pred ccCcccccccccccccCccccccceeecCCCC-----CcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECD-----HPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSV 265 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~-----H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~ 265 (286)
.+.|..|=||+.. -++ .++-.-...|. |--..+||..|.+.++. + ......+||+|++....+.|..
T Consensus 17 ~e~eR~CWiCF~T-deD----n~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~-~--n~~q~V~C~QCqTEYiiv~P~l 88 (293)
T KOG3053|consen 17 QELERCCWICFAT-DED----NRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQR-G--NPLQTVSCPQCQTEYIIVFPQL 88 (293)
T ss_pred cccceeEEEEecc-Ccc----cchhhhcccccccCccHHHHHHHHHHHHhHHhc-C--CCCceeechhhcchheeecccc
Confidence 4557889999995 222 12222222363 55678999999998764 1 2234579999999999999998
Q ss_pred eeeCCcHHH
Q 023176 266 IWYYTPEEK 274 (286)
Q Consensus 266 ~~~~~~~~k 274 (286)
-|+....|+
T Consensus 89 ~~~~~~Le~ 97 (293)
T KOG3053|consen 89 GPFDRVLER 97 (293)
T ss_pred ChHHHHHHH
Confidence 887654333
No 118
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=89.84 E-value=0.41 Score=35.59 Aligned_cols=68 Identities=22% Similarity=0.330 Sum_probs=28.8
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~ 270 (286)
......|-||-|.|=-.. ....|+.-..|+-..|..|..-=++... ..||+|++.+....-+.. |..
T Consensus 6 ~~~~qiCqiCGD~VGl~~--~Ge~FVAC~eC~fPvCr~CyEYErkeg~----------q~CpqCkt~ykr~kgsp~-V~g 72 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLTE--NGEVFVACHECAFPVCRPCYEYERKEGN----------QVCPQCKTRYKRHKGSPR-VEG 72 (80)
T ss_dssp --SS-B-SSS--B--B-S--SSSB--S-SSS-----HHHHHHHHHTS-----------SB-TTT--B----TT-----TT
T ss_pred hcCCcccccccCccccCC--CCCEEEEEcccCCccchhHHHHHhhcCc----------ccccccCCCcccccCCCC-CCC
Confidence 345678999999876544 4668888889999999999986665532 499999998876655544 443
Q ss_pred c
Q 023176 271 P 271 (286)
Q Consensus 271 ~ 271 (286)
+
T Consensus 73 D 73 (80)
T PF14569_consen 73 D 73 (80)
T ss_dssp S
T ss_pred C
Confidence 3
No 119
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=89.58 E-value=0.15 Score=39.41 Aligned_cols=33 Identities=30% Similarity=0.674 Sum_probs=27.8
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHH
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIR 231 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~ 231 (286)
+.+..|+||-..|.++ .|++.| |||+|+..|++
T Consensus 76 ~~~~~C~vC~k~l~~~------~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNS------VFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCc------eEEEeC-CCeEEeccccc
Confidence 6678899999987664 588886 89999999985
No 120
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=89.53 E-value=0.097 Score=48.20 Aligned_cols=28 Identities=25% Similarity=0.940 Sum_probs=25.2
Q ss_pred CCCcccccccCCCCCCCCCcccCCCCCC
Q 023176 30 PPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (286)
Q Consensus 30 ~~~~~C~~f~~G~C~~G~~C~y~H~~~~ 57 (286)
.++.+|.||.+|.|..|+.|.|+|....
T Consensus 90 PKSvvCafFk~g~C~KG~kCKFsHdl~~ 117 (343)
T KOG1763|consen 90 PKSVVCAFFKQGTCTKGDKCKFSHDLAV 117 (343)
T ss_pred chHHHHHHHhccCCCCCCcccccchHHH
Confidence 5678999999999999999999998754
No 121
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.47 E-value=0.16 Score=52.53 Aligned_cols=46 Identities=30% Similarity=0.867 Sum_probs=34.4
Q ss_pred ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
..|.||++ .+.+ ++..|+|.||.+|+..-...... ..||+||....
T Consensus 455 ~~c~ic~~--~~~~--------~it~c~h~~c~~c~~~~i~~~~~---------~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD--LDSF--------FITRCGHDFCVECLKKSIQQSEN---------APCPLCRNVLK 500 (674)
T ss_pred cccccccc--cccc--------eeecccchHHHHHHHhccccccC---------CCCcHHHHHHH
Confidence 89999999 4443 44469999999999876654321 27999998764
No 122
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=89.10 E-value=0.78 Score=46.61 Aligned_cols=23 Identities=30% Similarity=0.892 Sum_probs=13.4
Q ss_pred cCChhhhcCCCCCCCCCcccCCCCCC
Q 023176 132 SICSFAAAGNCPRGEKCPHIHGDTCP 157 (286)
Q Consensus 132 ~lC~y~~~G~C~~Gd~C~y~Hg~~c~ 157 (286)
.+|+|+- .|++ -.|+|.|+..|-
T Consensus 626 ~~CrY~p--nCrn-m~C~F~HPk~cR 648 (681)
T KOG3702|consen 626 GLCRYRP--NCRN-MQCKFYHPKTCR 648 (681)
T ss_pred ccceecc--CcCC-ccccccCCcccc
Confidence 4566653 3333 457777777764
No 123
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=87.21 E-value=0.2 Score=45.02 Aligned_cols=57 Identities=30% Similarity=0.628 Sum_probs=45.7
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCccc--CCCcccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACP--ICRKLSY 259 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP--~CR~~~~ 259 (286)
++.+|..|+||-...|-.| +-+|-|-|.|-|-.|-+|.....+..+ ..|| -|-+...
T Consensus 6 ~~~~d~~CPvCksDrYLnP---dik~linPECyHrmCESCvdRIFs~Gp----------AqCP~~gC~kILR 64 (314)
T COG5220 6 EEMEDRRCPVCKSDRYLNP---DIKILINPECYHRMCESCVDRIFSRGP----------AQCPYKGCGKILR 64 (314)
T ss_pred hhhhcccCCccccccccCC---CeEEEECHHHHHHHHHHHHHHHhcCCC----------CCCCCccHHHHHH
Confidence 3455678999999899888 467778888999999999999887654 3899 8876543
No 124
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=86.34 E-value=0.95 Score=38.26 Aligned_cols=61 Identities=18% Similarity=0.433 Sum_probs=39.8
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcC---cHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc---ccCc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPF---CISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV---IPSV 265 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~f---C~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~---~p~~ 265 (286)
..+..|=||.+. .+ + + ...=.|.... ..+|+++|...+. ..+|++|+.++.+. .|-.
T Consensus 6 ~~~~~CRIC~~~-~~-~---~---~~PC~CkGs~k~VH~sCL~rWi~~s~---------~~~CeiC~~~Y~i~~~~kpl~ 68 (162)
T PHA02825 6 LMDKCCWICKDE-YD-V---V---TNYCNCKNENKIVHKECLEEWINTSK---------NKSCKICNGPYNIKKNYKKCT 68 (162)
T ss_pred CCCCeeEecCCC-CC-C---c---cCCcccCCCchHHHHHHHHHHHhcCC---------CCcccccCCeEEEEEecCCCc
Confidence 457789999985 21 1 1 1111355533 7999999998654 36999999998743 4445
Q ss_pred eeeC
Q 023176 266 IWYY 269 (286)
Q Consensus 266 ~~~~ 269 (286)
.|.-
T Consensus 69 ~W~~ 72 (162)
T PHA02825 69 KWRC 72 (162)
T ss_pred cccc
Confidence 5643
No 125
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.86 E-value=1.1 Score=43.95 Aligned_cols=61 Identities=21% Similarity=0.558 Sum_probs=39.4
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCccc--CCCccccccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACP--ICRKLSYFVI 262 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP--~CR~~~~~~~ 262 (286)
...+.+|+||++.+-. . .+...|+|.||..|++.....+-..+.... .+|| -|+....-.+
T Consensus 67 ~~~~~~c~ic~~~~~~-------~-~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~---i~cp~~~C~a~v~~~~ 129 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG-------E-IIGLGCGHPFCPPCWTGYLGTKIHEGEEAK---IKCPAHGCPALVGEDT 129 (444)
T ss_pred CCccccCCcccCCCcc-------h-hhhcCCCcHHHHHHHHHHhhheeecccccc---ccCCCCCccccCCCce
Confidence 3556899999995321 1 344479999999999999987654432111 3444 5776655333
No 126
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=85.76 E-value=0.42 Score=45.05 Aligned_cols=29 Identities=41% Similarity=0.849 Sum_probs=25.5
Q ss_pred CCCCccCChhhhcCCCCCCCCCcccCCCC
Q 023176 127 KPADRSICSFAAAGNCPRGEKCPHIHGDT 155 (286)
Q Consensus 127 ~~~~~~lC~y~~~G~C~~Gd~C~y~Hg~~ 155 (286)
......+|+||..|.|++|+.|.|.|...
T Consensus 157 krn~p~Icsf~v~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 157 KRNRPHICSFFVKGECKRGAECPYRHEKP 185 (377)
T ss_pred cCCCCccccceeeccccccccccccccCC
Confidence 45556789999999999999999999876
No 127
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.75 E-value=0.87 Score=42.94 Aligned_cols=60 Identities=23% Similarity=0.531 Sum_probs=42.4
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeC
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY 269 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~ 269 (286)
+|..|+.|||. ++- .++.|---+ ||--.|.-|....++.-+ ..||.||.... --+..|+.
T Consensus 13 eed~cplcie~-mdi---tdknf~pc~-cgy~ic~fc~~~irq~ln----------grcpacrr~y~--denv~~~~ 72 (480)
T COG5175 13 EEDYCPLCIEP-MDI---TDKNFFPCP-CGYQICQFCYNNIRQNLN----------GRCPACRRKYD--DENVRYVT 72 (480)
T ss_pred ccccCcccccc-ccc---ccCCcccCC-cccHHHHHHHHHHHhhcc----------CCChHhhhhcc--ccceeEEe
Confidence 34559999995 432 345665564 999999999887776532 48999999865 44556665
No 128
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=84.46 E-value=0.56 Score=48.12 Aligned_cols=50 Identities=28% Similarity=0.646 Sum_probs=36.4
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
-++++|+||++.++++ ++..|.|.||..|+..-...... -..||+|+...
T Consensus 19 ~k~lEc~ic~~~~~~p---------~~~kc~~~~l~~~~n~~f~~~~~--------~~~~~lc~~~~ 68 (684)
T KOG4362|consen 19 QKILECPICLEHVKEP---------SLLKCDHIFLKFCLNKLFESKKG--------PKQCALCKSDI 68 (684)
T ss_pred hhhccCCceeEEeecc---------chhhhhHHHHhhhhhceeeccCc--------cccchhhhhhh
Confidence 4578899999988774 44479999999998763332221 26899999544
No 129
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.35 E-value=0.31 Score=44.98 Aligned_cols=26 Identities=35% Similarity=1.088 Sum_probs=22.8
Q ss_pred Cccccccc-CCCCCCCCCcccCCCCCC
Q 023176 32 NNICTYYQ-KGFCSYGSRCRYEHVKPS 57 (286)
Q Consensus 32 ~~~C~~f~-~G~C~~G~~C~y~H~~~~ 57 (286)
.-+|+.|. +|+|.||+.|+|+|...+
T Consensus 186 pDicKdykeTgycg~gdSckFlh~r~D 212 (313)
T KOG1813|consen 186 PDICKDYKETGYCGYGDSCKFLHDRSD 212 (313)
T ss_pred chhhhhhHhhCcccccchhhhhhhhhh
Confidence 34799998 899999999999999854
No 130
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=83.72 E-value=0.78 Score=30.71 Aligned_cols=42 Identities=33% Similarity=0.751 Sum_probs=24.0
Q ss_pred ccccccccccCccccccceeecCCCCC-----cCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176 197 CSVCLDRVLSKPTAAERKFGLLSECDH-----PFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (286)
Q Consensus 197 C~IC~e~i~~~~~~~~~~~~~l~~C~H-----~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C 254 (286)
|=||++.-.+.+ .++..|+= .-..+|+++|...+. ..+|++|
T Consensus 1 CrIC~~~~~~~~-------~li~pC~C~Gs~~~vH~~CL~~W~~~~~---------~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-------PLISPCRCKGSMKYVHRSCLERWIRESG---------NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--------EE-SSS-SSCCGSEECCHHHHHHHHHT----------SB-TTT
T ss_pred CeEeCCcCCCCC-------ceecccccCCCcchhHHHHHHHHHHhcC---------CCcCCCC
Confidence 679999633321 23334652 335789999998743 2579887
No 131
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=81.25 E-value=1.6 Score=40.84 Aligned_cols=58 Identities=26% Similarity=0.635 Sum_probs=40.2
Q ss_pred ccCcccccccccccccCccccccceeecCCC--CCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceee
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSEC--DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWY 268 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C--~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~ 268 (286)
..+-++|+||.+. +..| |.- | ||.-|.+|-.+-. ..||.||.....+
T Consensus 45 ~~~lleCPvC~~~-l~~P--------i~Q-C~nGHlaCssC~~~~~--------------~~CP~Cr~~~g~~------- 93 (299)
T KOG3002|consen 45 DLDLLDCPVCFNP-LSPP--------IFQ-CDNGHLACSSCRTKVS--------------NKCPTCRLPIGNI------- 93 (299)
T ss_pred chhhccCchhhcc-Cccc--------cee-cCCCcEehhhhhhhhc--------------ccCCccccccccH-------
Confidence 3445789999995 5555 553 7 7999999977443 4899999987633
Q ss_pred CCcHHHHHHHHH
Q 023176 269 YTPEEKQEIIDS 280 (286)
Q Consensus 269 ~~~~~k~~li~~ 280 (286)
..-..|+|++.
T Consensus 94 -R~~amEkV~e~ 104 (299)
T KOG3002|consen 94 -RCRAMEKVAEA 104 (299)
T ss_pred -HHHHHHHHHHh
Confidence 23456666664
No 132
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=80.93 E-value=0.98 Score=42.39 Aligned_cols=44 Identities=27% Similarity=0.656 Sum_probs=33.2
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C 254 (286)
.+...|+||+..+-+ | .++.-=|-+||..||-+...+. ..||+=
T Consensus 298 ~~~~~CpvClk~r~N-p-------tvl~vSGyVfCY~Ci~~Yv~~~-----------~~CPVT 341 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQN-P-------TVLEVSGYVFCYPCIFSYVVNY-----------GHCPVT 341 (357)
T ss_pred CccccChhHHhccCC-C-------ceEEecceEEeHHHHHHHHHhc-----------CCCCcc
Confidence 445789999998655 4 3444469999999999999753 489863
No 133
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=79.81 E-value=0.81 Score=31.08 Aligned_cols=47 Identities=28% Similarity=0.675 Sum_probs=22.4
Q ss_pred ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCc
Q 023176 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256 (286)
Q Consensus 195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~ 256 (286)
+.|+|-... ++-| +-..+|.|.-|++ +..|.+.... +..-.||+|.+
T Consensus 3 L~CPls~~~-i~~P-------~Rg~~C~H~~CFD-l~~fl~~~~~------~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQR-IRIP-------VRGKNCKHLQCFD-LESFLESNQR------TPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB--SSE-------EEETT--SS--EE-HHHHHHHHHH------S---B-TTT--
T ss_pred eeCCCCCCE-EEeC-------ccCCcCcccceEC-HHHHHHHhhc------cCCeECcCCcC
Confidence 679999985 4556 5566899998865 4445543221 11258999986
No 134
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=79.61 E-value=0.72 Score=50.23 Aligned_cols=52 Identities=31% Similarity=0.766 Sum_probs=39.8
Q ss_pred HhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 189 ~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
..++....|.||+|.+-+.- +|. .|||.+|-.|+..|...+ ..||+|.....
T Consensus 1148 ~~~~~~~~c~ic~dil~~~~-------~I~-~cgh~~c~~c~~~~l~~~-----------s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1148 MNLSGHFVCEICLDILRNQG-------GIA-GCGHEPCCRCDELWLYAS-----------SRCPICKSIKG 1199 (1394)
T ss_pred HHhhcccchHHHHHHHHhcC-------Cee-eechhHhhhHHHHHHHHh-----------ccCcchhhhhh
Confidence 35567789999999543232 455 699999999999999865 48999986554
No 135
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=79.36 E-value=3.5 Score=33.92 Aligned_cols=57 Identities=21% Similarity=0.473 Sum_probs=39.4
Q ss_pred hccCcccccccccccccCccccccceee-cCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGL-LSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~-l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
.+..--+|.||-|. .. |.+|-- -..||-..|..|-.+.|+... ....||.|++.|..
T Consensus 76 ~d~~lYeCnIC~et-S~-----ee~FLKPneCCgY~iCn~Cya~LWK~~~--------~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 76 LDPKLYECNICKET-SA-----EERFLKPNECCGYSICNACYANLWKFCN--------LYPVCPVCKTSFKS 133 (140)
T ss_pred cCCCceeccCcccc-cc-----hhhcCCcccccchHHHHHHHHHHHHHcc--------cCCCCCcccccccc
Confidence 33466799999995 32 234422 235999999999877666532 24699999998753
No 136
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=78.92 E-value=0.69 Score=42.90 Aligned_cols=56 Identities=27% Similarity=0.607 Sum_probs=38.6
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHH------------------HHhhCCCCCCCcCCCcCcccC
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN------------------WRSSSPTSGMDVNTALRACPI 253 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~------------------w~~~~~~~~~~~~~~~~~CP~ 253 (286)
-.+..|.|||=-+-++| -|.+. .|.|-|...|+.. |++.... ...-.||+
T Consensus 113 ~p~gqCvICLygfa~~~-----~ft~T-~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~------~~eavcpV 180 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSP-----AFTVT-ACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKE------QVEAVCPV 180 (368)
T ss_pred CCCCceEEEEEeecCCC-----ceeee-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hHhhhhhH
Confidence 44689999998766655 45555 5999999999843 5543211 12346999
Q ss_pred CCcccc
Q 023176 254 CRKLSY 259 (286)
Q Consensus 254 CR~~~~ 259 (286)
||....
T Consensus 181 cre~i~ 186 (368)
T KOG4445|consen 181 CRERIK 186 (368)
T ss_pred hhhhcc
Confidence 998874
No 137
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=78.82 E-value=1.4 Score=30.10 Aligned_cols=25 Identities=40% Similarity=0.910 Sum_probs=17.7
Q ss_pred cccCCCccccccccCceeeCCcHHHHHHHHHHHhhc
Q 023176 250 ACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKL 285 (286)
Q Consensus 250 ~CP~CR~~~~~~~p~~~~~~~~~~k~~li~~yk~~~ 285 (286)
.||+|...+ +.+.+++||+.|++.+
T Consensus 22 ~CPlC~r~l-----------~~e~~~~li~~~~~~i 46 (54)
T PF04423_consen 22 CCPLCGRPL-----------DEEHRQELIKKYKSEI 46 (54)
T ss_dssp E-TTT--EE------------HHHHHHHHHHHHHHH
T ss_pred cCCCCCCCC-----------CHHHHHHHHHHHHHHH
Confidence 899999885 3567899999999865
No 138
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.71 E-value=2.4 Score=44.64 Aligned_cols=37 Identities=27% Similarity=0.556 Sum_probs=30.5
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHh
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRS 235 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~ 235 (286)
.....|.||.-.++.+| |.+-+ |||.|..+||.+-..
T Consensus 815 ep~d~C~~C~~~ll~~p------F~vf~-CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKP------FYVFP-CGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcCc------ceeee-ccchHHHHHHHHHHH
Confidence 45789999999998876 67775 999999999976544
No 139
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=78.43 E-value=1.6 Score=40.27 Aligned_cols=51 Identities=29% Similarity=0.703 Sum_probs=38.4
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~ 256 (286)
+.+.+..|+||.|.++.- ....+.++ |||.--+.|.++-.... .+||+|.+
T Consensus 154 e~~~~~ncPic~e~l~~s----~~~~~~~~-CgH~~h~~cf~e~~~~~-----------y~CP~C~~ 204 (276)
T KOG1940|consen 154 ERSSEFNCPICKEYLFLS----FEDAGVLK-CGHYMHSRCFEEMICEG-----------YTCPICSK 204 (276)
T ss_pred hhcccCCCchhHHHhccc----cccCCccC-cccchHHHHHHHHhccC-----------CCCCcccc
Confidence 445566699999988763 23446774 99999988888876543 69999988
No 140
>PHA02862 5L protein; Provisional
Probab=77.14 E-value=0.8 Score=38.11 Aligned_cols=56 Identities=21% Similarity=0.459 Sum_probs=36.1
Q ss_pred cccccccccccccCccccccceeecCCCC-----CcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc---ccccCc
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECD-----HPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY---FVIPSV 265 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~-----H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~---~~~p~~ 265 (286)
+..|=||++. -+ . . +- .|. ---..+|+++|.+..+ ...|++|+.++. ...|-.
T Consensus 2 ~diCWIC~~~-~~-e----~---~~-PC~C~GS~K~VHq~CL~~WIn~S~---------k~~CeLCkteY~Ik~~yKpf~ 62 (156)
T PHA02862 2 SDICWICNDV-CD-E----R---NN-FCGCNEEYKVVHIKCMQLWINYSK---------KKECNLCKTKYNIKKTYVSFK 62 (156)
T ss_pred CCEEEEecCc-CC-C----C---cc-cccccCcchhHHHHHHHHHHhcCC---------CcCccCCCCeEEEEEccccHH
Confidence 4679999995 22 1 1 11 232 2345899999997654 369999999986 233444
Q ss_pred eee
Q 023176 266 IWY 268 (286)
Q Consensus 266 ~~~ 268 (286)
.|.
T Consensus 63 kW~ 65 (156)
T PHA02862 63 KWN 65 (156)
T ss_pred Hhh
Confidence 564
No 141
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=76.24 E-value=1.2 Score=42.04 Aligned_cols=24 Identities=33% Similarity=1.017 Sum_probs=16.7
Q ss_pred ccccccccccCCCCCCCCCccCCC
Q 023176 5 VLCKFFAHGACLKGEHCEFSHDWK 28 (286)
Q Consensus 5 ~~C~~f~~G~C~~G~~C~f~H~~~ 28 (286)
.+|.||..|.|++|..|.|.|+..
T Consensus 162 ~Icsf~v~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 162 HICSFFVKGECKRGAECPYRHEKP 185 (377)
T ss_pred ccccceeeccccccccccccccCC
Confidence 467777777777777777777643
No 142
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=74.16 E-value=1.9 Score=25.28 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=12.6
Q ss_pred cccccccccccCccccccceeecCCCCCcC
Q 023176 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPF 225 (286)
Q Consensus 196 ~C~IC~e~i~~~~~~~~~~~~~l~~C~H~f 225 (286)
+|+-|-..|.... .+=+.|||.|
T Consensus 2 ~CP~C~~~V~~~~-------~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESA-------KFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhc-------CcCCCCCCCC
Confidence 4666666554432 3445566665
No 143
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.35 E-value=2.6 Score=33.63 Aligned_cols=90 Identities=20% Similarity=0.387 Sum_probs=51.9
Q ss_pred CCCCCCCCCccccCCChHHHHHHHHHHHHHHHHHHHHhccCcccccccccccccCcc------ccccceeecCCCCCcCc
Q 023176 153 GDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPT------AAERKFGLLSECDHPFC 226 (286)
Q Consensus 153 g~~c~~c~~~~l~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~C~IC~e~i~~~~~------~~~~~~~~l~~C~H~fC 226 (286)
|..|++||..++.+......=-|.-- +...+++...+......|--|+..+.+.+. ....+|.-. .|.+.||
T Consensus 15 P~~CpiCgLtLVss~HLARSyHHLfP-l~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~-~C~~~FC 92 (112)
T TIGR00622 15 PVECPICGLTLILSTHLARSYHHLFP-LKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCA-VCKNVFC 92 (112)
T ss_pred CCcCCcCCCEEeccchHHHhhhccCC-CcccccccccccCCCCcccCcCCCCCCcccccccccccccceeCC-CCCCccc
Confidence 56789999887777665544333211 111111111122234569999996544321 012244444 7999999
Q ss_pred HHHHHHHHhhCCCCCCCcCCCcCcccCCC
Q 023176 227 ISCIRNWRSSSPTSGMDVNTALRACPICR 255 (286)
Q Consensus 227 ~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR 255 (286)
.+|=.-|-.. ...||-|-
T Consensus 93 ~dCD~fiHe~-----------Lh~CPGC~ 110 (112)
T TIGR00622 93 VDCDVFVHES-----------LHCCPGCI 110 (112)
T ss_pred cccchhhhhh-----------ccCCcCCC
Confidence 9997766643 24799986
No 144
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.35 E-value=0.39 Score=40.71 Aligned_cols=61 Identities=25% Similarity=0.560 Sum_probs=38.5
Q ss_pred CCCCCCCCCCccccCCChHHHHHHHHHHHHHHHHH--HHHhccCcccccccccccccCccccccceeecCCCC
Q 023176 152 HGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHL--EALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECD 222 (286)
Q Consensus 152 Hg~~c~~c~~~~l~p~~~~~~~e~~~~~~~~~~~~--~~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~ 222 (286)
-|..|++|.+.++ ++.-+-|.-.|+.+-+.. +++...+--+|.||||.+..- ...+.|| |-
T Consensus 137 ~g~KCPvC~K~V~----sDd~e~HlvMCLtkPrlsYNdDVL~ddkGECvICLEdL~~G-----dtIARLP-CL 199 (205)
T KOG0801|consen 137 SGMKCPVCHKVVP----SDDAEIHLVMCLTKPRLSYNDDVLKDDKGECVICLEDLEAG-----DTIARLP-CL 199 (205)
T ss_pred CCccCCccccccC----CCcceEEEEEEecccccccccchhcccCCcEEEEhhhccCC-----Cceeccc-eE
Confidence 3567888888643 233445777777666543 455555668999999975532 2345665 64
No 145
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=72.04 E-value=1.2 Score=42.79 Aligned_cols=59 Identities=25% Similarity=0.608 Sum_probs=0.0
Q ss_pred ccccccccccccc------CccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176 194 EIECSVCLDRVLS------KPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (286)
Q Consensus 194 ~~~C~IC~e~i~~------~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~ 261 (286)
-.+|++=|..+.= +.....+.|+.| +|||++=+ ..|....+ .....+.||+||+...+|
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl-~CGHVhG~---h~Wg~~~~-----~~~~~r~CPlCr~~g~~V 341 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYL-NCGHVHGY---HNWGQDSD-----RDPRSRTCPLCRQVGPYV 341 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeec-cccceeee---cccccccc-----cccccccCCCccccCCce
Confidence 3567776654321 111345678888 79998754 36765332 112358999999998874
No 146
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=71.24 E-value=2.3 Score=44.33 Aligned_cols=61 Identities=11% Similarity=0.181 Sum_probs=39.2
Q ss_pred hccCcccccccccccccCccccccceeec--CCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLL--SECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l--~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
......+|.||.-. +..+. .-|+++ .+|+|.||..||.+|++.-. ...+.-.|+.|..-+.
T Consensus 92 K~a~s~Ss~~C~~E-~S~~~---ds~~i~P~~~~~~~~CP~Ci~s~~DqL~-----~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 92 KTAESDTSPVCEKE-HSPDV---DSSNICPVQTHVENQCPNCLKSCNDQLE-----ESEKHTAHYFCEECVG 154 (1134)
T ss_pred ccccccccchhhee-cCCcc---cccCcCchhhhhhhhhhHHHHHHHHHhh-----ccccccccccHHHHhh
Confidence 33445667777664 32221 233444 47999999999999997532 2344568888877664
No 147
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=70.34 E-value=4.3 Score=26.62 Aligned_cols=40 Identities=23% Similarity=0.675 Sum_probs=21.3
Q ss_pred ccccccccccCccccccceeec---CCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176 197 CSVCLDRVLSKPTAAERKFGLL---SECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (286)
Q Consensus 197 C~IC~e~i~~~~~~~~~~~~~l---~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C 254 (286)
|.+|.|.++. |+. ++|+=.+...|+..++..... ..||.|
T Consensus 1 C~~C~~iv~~---------G~~C~~~~C~~r~H~~C~~~y~r~~~~---------~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQ---------GQRCSNRDCNVRLHDDCFKKYFRHRSN---------PKCPNC 43 (43)
T ss_dssp -TTT-SB-SS---------SEE-SS--S--EE-HHHHHHHTTT-SS----------B-TTT
T ss_pred CcccchhHee---------eccCCCCccCchHHHHHHHHHHhcCCC---------CCCcCC
Confidence 6788885543 443 137778999999998876532 379987
No 148
>PLN02189 cellulose synthase
Probab=69.16 E-value=4.8 Score=43.43 Aligned_cols=67 Identities=21% Similarity=0.374 Sum_probs=48.2
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~ 270 (286)
......|.||-|.|--+ .....|+--..|+-.-|..|..-=++... .+||+|++.+.....+. ||..
T Consensus 31 ~~~~~~C~iCgd~vg~~--~~g~~fvaC~~C~fpvCr~Cyeyer~eg~----------q~CpqCkt~Y~r~kgs~-~v~g 97 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLT--VDGDLFVACNECGFPVCRPCYEYERREGT----------QNCPQCKTRYKRLKGSP-RVEG 97 (1040)
T ss_pred cccCccccccccccCcC--CCCCEEEeeccCCCccccchhhhhhhcCC----------ccCcccCCchhhccCCC-CcCC
Confidence 34456899999986543 34668888877999999999965554432 49999999998665443 3544
No 149
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.69 E-value=3.2 Score=38.47 Aligned_cols=38 Identities=24% Similarity=0.519 Sum_probs=25.5
Q ss_pred CCCcCcHHHHHHHHhhCCCCCCC---cCCCcCcccCCCcccc
Q 023176 221 CDHPFCISCIRNWRSSSPTSGMD---VNTALRACPICRKLSY 259 (286)
Q Consensus 221 C~H~fC~~Ci~~w~~~~~~~~~~---~~~~~~~CP~CR~~~~ 259 (286)
|.-..|.+|+-+|...+|+. .+ --+..-+||+||+.+-
T Consensus 325 crp~wc~~cla~~f~~rq~~-v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDN-VYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccc-hhHHHHHhcCCCCcchhhceE
Confidence 44456789999999877641 10 0123469999999874
No 150
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.84 E-value=4.5 Score=34.93 Aligned_cols=64 Identities=20% Similarity=0.516 Sum_probs=37.5
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
-..|+||+-.-++-. .-++.---+ .||-.|..-|+..|...-.....+-+-+-..||-|-.+..
T Consensus 165 ~~~cgicyayqldGT-ipDqtCdN~-qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 165 LGACGICYAYQLDGT-IPDQTCDNI-QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhcccceeeeecCCc-ccccccccc-ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 367999987544311 111111112 4999999999999987422111111223358999987754
No 151
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=66.27 E-value=4 Score=38.42 Aligned_cols=85 Identities=20% Similarity=0.385 Sum_probs=50.4
Q ss_pred CCCCCCCCCccccCCChHHHHHHHHHHHHHHHHHHHHhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHH
Q 023176 153 GDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN 232 (286)
Q Consensus 153 g~~c~~c~~~~l~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~ 232 (286)
|..|++|+..+.........--|. .-+..+.++.......+.-|-.|.+...... +|.-- .|.|.||++|=.-
T Consensus 290 P~eCpiC~ltLVss~hLARSyhhL-~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~-----~y~C~-~Ck~~FCldCDv~ 362 (378)
T KOG2807|consen 290 PIECPICSLTLVSSPHLARSYHHL-FPLKPFVEIPETEYNGSRFCFACQGELLSSG-----RYRCE-SCKNVFCLDCDVF 362 (378)
T ss_pred CccCCccceeEecchHHHHHHHhh-cCCcchhhccccccCCCcceeeeccccCCCC-----cEEch-hccceeeccchHH
Confidence 678999998766555443333232 2122222233333334455999977655543 56555 5999999999654
Q ss_pred HHhhCCCCCCCcCCCcCcccCCC
Q 023176 233 WRSSSPTSGMDVNTALRACPICR 255 (286)
Q Consensus 233 w~~~~~~~~~~~~~~~~~CP~CR 255 (286)
--.+- -.||-|.
T Consensus 363 iHesL-----------h~CpgCe 374 (378)
T KOG2807|consen 363 IHESL-----------HNCPGCE 374 (378)
T ss_pred HHhhh-----------hcCCCcC
Confidence 33321 3799886
No 152
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=60.98 E-value=7.1 Score=42.35 Aligned_cols=68 Identities=21% Similarity=0.358 Sum_probs=48.9
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~ 270 (286)
......|-||=|.|=-+. ....|+--..|+-.-|..|..-=|+... ..||+|++.+.....+.. |..
T Consensus 14 ~~~~qiCqICGD~vg~~~--~Ge~FVAC~eC~FPVCrpCYEYEr~eG~----------q~CPqCktrYkr~kgspr-v~g 80 (1079)
T PLN02638 14 HGGGQVCQICGDNVGKTV--DGEPFVACDVCAFPVCRPCYEYERKDGN----------QSCPQCKTKYKRHKGSPA-ILG 80 (1079)
T ss_pred ccCCceeeecccccCcCC--CCCEEEEeccCCCccccchhhhhhhcCC----------ccCCccCCchhhhcCCCC-cCc
Confidence 334568999999875543 4568887778999999999964444322 499999999987665444 554
Q ss_pred c
Q 023176 271 P 271 (286)
Q Consensus 271 ~ 271 (286)
+
T Consensus 81 D 81 (1079)
T PLN02638 81 D 81 (1079)
T ss_pred c
Confidence 4
No 153
>PLN02436 cellulose synthase A
Probab=60.95 E-value=8.6 Score=41.71 Aligned_cols=68 Identities=22% Similarity=0.404 Sum_probs=48.0
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeC
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY 269 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~ 269 (286)
+......|.||-|.|=-.. ....|+-=..|+-.-|..|..-=++... .+||+|++.+.....+. ||.
T Consensus 32 ~~~~~~iCqICGD~Vg~t~--dGe~FVACn~C~fpvCr~Cyeyer~eg~----------~~Cpqckt~Y~r~kgs~-~~~ 98 (1094)
T PLN02436 32 QELSGQTCQICGDEIELTV--DGEPFVACNECAFPVCRPCYEYERREGN----------QACPQCKTRYKRIKGSP-RVE 98 (1094)
T ss_pred cccCCccccccccccCcCC--CCCEEEeeccCCCccccchhhhhhhcCC----------ccCcccCCchhhccCCC-CcC
Confidence 3445568999999875433 4568877777999999999965554432 49999999998655433 344
Q ss_pred C
Q 023176 270 T 270 (286)
Q Consensus 270 ~ 270 (286)
.
T Consensus 99 ~ 99 (1094)
T PLN02436 99 G 99 (1094)
T ss_pred C
Confidence 4
No 154
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.30 E-value=21 Score=37.74 Aligned_cols=44 Identities=27% Similarity=0.634 Sum_probs=32.3
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
.-.|.+|--. ++=| ++.. -|+|.|...|+. .+. ..||-|+....
T Consensus 840 ~skCs~C~~~-LdlP------~VhF-~CgHsyHqhC~e----~~~----------~~CP~C~~e~~ 883 (933)
T KOG2114|consen 840 VSKCSACEGT-LDLP------FVHF-LCGHSYHQHCLE----DKE----------DKCPKCLPELR 883 (933)
T ss_pred eeeecccCCc-cccc------eeee-ecccHHHHHhhc----cCc----------ccCCccchhhh
Confidence 4589999874 6655 3555 499999999998 222 48999998443
No 155
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=58.18 E-value=4.2 Score=27.44 Aligned_cols=33 Identities=39% Similarity=0.766 Sum_probs=21.9
Q ss_pred eecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 216 GLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 216 ~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
+++..=+|-.|+.|+....+.. ..||+|..+..
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~~s-----------~~C~iC~~~LP 46 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLSRS-----------DRCPICGKPLP 46 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-SSS-----------SEETTTTEE--
T ss_pred CeeeecchhHHHHHHHHHhccc-----------cCCCcccCcCc
Confidence 5664336999999999888655 38999987643
No 156
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=58.10 E-value=4.9 Score=36.54 Aligned_cols=25 Identities=28% Similarity=0.733 Sum_probs=20.5
Q ss_pred CCccccccccccCCCCCCCCCccCC
Q 023176 3 KRVLCKFFAHGACLKGEHCEFSHDW 27 (286)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~ 27 (286)
+-.+|+.|..+.|.+|..|.|.|..
T Consensus 151 rea~C~~~e~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 151 REAICGQFERTECSRGGACNFMHVK 175 (260)
T ss_pred hhhhhcccccccCCCCCcCcchhhh
Confidence 4567888888899999999999964
No 157
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.85 E-value=4.5 Score=41.34 Aligned_cols=37 Identities=22% Similarity=0.575 Sum_probs=26.9
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHh
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRS 235 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~ 235 (286)
-+-|.||+..++. ++...+...|||+.|..|++..-.
T Consensus 11 ~l~c~ic~n~f~~-----~~~~Pvsl~cghtic~~c~~~lyn 47 (861)
T KOG3161|consen 11 LLLCDICLNLFVV-----QRLEPVSLQCGHTICGHCVQLLYN 47 (861)
T ss_pred HhhchHHHHHHHH-----HhcCcccccccchHHHHHHHhHhh
Confidence 4669999886554 234444457999999999998764
No 158
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.39 E-value=11 Score=36.34 Aligned_cols=85 Identities=19% Similarity=0.336 Sum_probs=44.9
Q ss_pred CcccCCCCCCCCCCccccCCChHHHHHHHHHHHHHHHHHHHHhccCcccccccccccccCccccccceeecCCCCCcCcH
Q 023176 148 CPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCI 227 (286)
Q Consensus 148 C~y~Hg~~c~~c~~~~l~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~ 227 (286)
|..=|...|-.|+...-.+.+=+..++-...+......+..++ ..-..|++|.-. .++.. +..-.+=. |+|-||.
T Consensus 261 C~~C~~~fCv~C~~~wh~~~sC~eykk~~~~~~~d~~~~~~la-~~wr~CpkC~~~-ie~~~--GCnhm~Cr-C~~~fcy 335 (384)
T KOG1812|consen 261 CVKCHELFCVKCKVPWHANLSCEEYKKLNPEEYVDDITLKYLA-KRWRQCPKCKFM-IELSE--GCNHMTCR-CGHQFCY 335 (384)
T ss_pred cccCCCceeecCCCcCCCCCCHHHHHHhCCcccccHHHHHHHH-HhcCcCccccee-eeecC--CcceEEee-ccccchh
Confidence 4444555566676654444332222222222222222222223 446789999884 44432 23333443 8999999
Q ss_pred HHHHHHHhhC
Q 023176 228 SCIRNWRSSS 237 (286)
Q Consensus 228 ~Ci~~w~~~~ 237 (286)
.|...|+..+
T Consensus 336 ~C~~~~~~~~ 345 (384)
T KOG1812|consen 336 MCGGDWKTHN 345 (384)
T ss_pred hcCcchhhCC
Confidence 9999998654
No 159
>PLN02400 cellulose synthase
Probab=54.35 E-value=7.6 Score=42.14 Aligned_cols=69 Identities=22% Similarity=0.359 Sum_probs=48.9
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeC
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY 269 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~ 269 (286)
+......|-||=|.|=-+. ....|+--..|+-.-|..|..-=|+... ..||+|++.+....-+.. |.
T Consensus 32 ~~~~gqiCqICGD~VG~t~--dGe~FVAC~eCaFPVCRpCYEYERkeGn----------q~CPQCkTrYkR~Kgspr-V~ 98 (1085)
T PLN02400 32 KNLNGQICQICGDDVGVTE--TGDVFVACNECAFPVCRPCYEYERKDGT----------QCCPQCKTRYRRHKGSPR-VE 98 (1085)
T ss_pred cccCCceeeecccccCcCC--CCCEEEEEccCCCccccchhheecccCC----------ccCcccCCccccccCCCC-CC
Confidence 3445668999999876543 4568888778999999999954333322 499999999987654443 55
Q ss_pred Cc
Q 023176 270 TP 271 (286)
Q Consensus 270 ~~ 271 (286)
.+
T Consensus 99 GD 100 (1085)
T PLN02400 99 GD 100 (1085)
T ss_pred cc
Confidence 43
No 160
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.50 E-value=7.3 Score=36.07 Aligned_cols=45 Identities=27% Similarity=0.535 Sum_probs=31.7
Q ss_pred hccCcccccccccccccCccccccceeecCC-CCCcCcHHHHHHHHhhCCCC
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSE-CDHPFCISCIRNWRSSSPTS 240 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~-C~H~fC~~Ci~~w~~~~~~~ 240 (286)
..+.-+-|.+|.|. +++. .|+--|. =.|.||+-|-|+..+.+...
T Consensus 264 A~~apLcCTLC~ER-LEDT-----HFVQCPSVp~HKFCFPCSResIK~Qg~s 309 (352)
T KOG3579|consen 264 APSAPLCCTLCHER-LEDT-----HFVQCPSVPSHKFCFPCSRESIKQQGAS 309 (352)
T ss_pred CCCCceeehhhhhh-hccC-----ceeecCCCcccceecccCHHHHHhhcCC
Confidence 44566899999996 5543 4543211 27999999999999876543
No 161
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.56 E-value=13 Score=27.84 Aligned_cols=23 Identities=30% Similarity=0.769 Sum_probs=15.6
Q ss_pred CcccCCCccccccccCceeeCCcHHHHHHHHHH
Q 023176 249 RACPICRKLSYFVIPSVIWYYTPEEKQEIIDSY 281 (286)
Q Consensus 249 ~~CP~CR~~~~~~~p~~~~~~~~~~k~~li~~y 281 (286)
--||.||- +|+. ..|.++||+.=
T Consensus 22 D~CPrCrG---------VWLD-rGELdKli~r~ 44 (88)
T COG3809 22 DYCPRCRG---------VWLD-RGELDKLIERS 44 (88)
T ss_pred eeCCcccc---------Eeec-chhHHHHHHHh
Confidence 46777765 3874 46888888763
No 162
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.32 E-value=6.5 Score=34.75 Aligned_cols=39 Identities=44% Similarity=0.885 Sum_probs=26.4
Q ss_pred ccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 197 CSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 197 C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
|-+|-+. +.. ++|-.|+|. +|..|-.. ..+||+|+....
T Consensus 161 Cr~C~~~--------~~~-VlllPCrHl~lC~~C~~~---------------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER--------EAT-VLLLPCRHLCLCGICDES---------------LRICPICRSPKT 200 (207)
T ss_pred ceecCcC--------Cce-EEeecccceEeccccccc---------------CccCCCCcChhh
Confidence 8899884 122 444459994 67777543 248999998754
No 163
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=48.13 E-value=8.3 Score=35.09 Aligned_cols=28 Identities=25% Similarity=0.553 Sum_probs=23.9
Q ss_pred CCCccCChhhhcCCCCCCCCCcccCCCC
Q 023176 128 PADRSICSFAAAGNCPRGEKCPHIHGDT 155 (286)
Q Consensus 128 ~~~~~lC~y~~~G~C~~Gd~C~y~Hg~~ 155 (286)
..+...|.+|..+.|.+|..|-|+|...
T Consensus 149 ~~rea~C~~~e~~~C~rG~~CnFmH~k~ 176 (260)
T KOG2202|consen 149 DFREAICGQFERTECSRGGACNFMHVKR 176 (260)
T ss_pred chhhhhhcccccccCCCCCcCcchhhhh
Confidence 3445679999999999999999999883
No 164
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=47.82 E-value=15 Score=39.73 Aligned_cols=66 Identities=24% Similarity=0.360 Sum_probs=47.4
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCc
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~ 271 (286)
....|-||=|.|=-.+ ....|+--..|+-.-|..|..-=++.. ...||+|++.+.....+. ||..+
T Consensus 14 ~~~~c~iCGd~vg~~~--~Ge~FVAC~eC~fpvCr~cyeye~~~g----------~~~cp~c~t~y~~~~~~~-~~~~d 79 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKE--DGQPFVACHVCGFPVCKPCYEYERSEG----------NQCCPQCNTRYKRHKGCP-RVEGD 79 (1044)
T ss_pred CcchhhccccccCcCC--CCCEEEEeccCCCccccchhhhhhhcC----------CccCCccCCchhhhcCCC-CccCC
Confidence 4578999999876543 456888777899999999995444332 249999999998666443 45543
No 165
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=44.58 E-value=15 Score=25.15 Aligned_cols=40 Identities=18% Similarity=0.462 Sum_probs=25.5
Q ss_pred ccccc--ccccccccCccccccceeecCCCCCcCcHHHHHHHH
Q 023176 194 EIECS--VCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (286)
Q Consensus 194 ~~~C~--IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~ 234 (286)
-.-|+ =|.-.|..... .....+.-+.|+|.||..|...|-
T Consensus 18 ~~~CP~~~C~~~~~~~~~-~~~~~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 18 LKWCPAPDCSAAIIVTEE-EGCNRVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred ccCCCCCCCcceEEecCC-CCCCeeECCCCCCeECCCCCCcCC
Confidence 34588 78664433211 123345555799999999999885
No 166
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=43.82 E-value=4.2 Score=32.51 Aligned_cols=64 Identities=23% Similarity=0.508 Sum_probs=40.8
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~ 270 (286)
.+..|.+|... |.-. ..+. .+-.+|.|.+|.+|-.. ..+ ...-.|-+|++.-.+.+-+--|+.+
T Consensus 53 ~~~~C~~C~~~-fg~l--~~~~-~~C~~C~~~VC~~C~~~--~~~--------~~~WlC~vC~k~rel~~~sG~Wf~~ 116 (118)
T PF02318_consen 53 GERHCARCGKP-FGFL--FNRG-RVCVDCKHRVCKKCGVY--SKK--------EPIWLCKVCQKQRELKKKSGEWFYE 116 (118)
T ss_dssp CCSB-TTTS-B-CSCT--STTC-EEETTTTEEEETTSEEE--TSS--------SCCEEEHHHHHHHHHHHHCSHHHHC
T ss_pred CCcchhhhCCc-cccc--CCCC-CcCCcCCccccCccCCc--CCC--------CCCEEChhhHHHHHHHHHhhhHHhc
Confidence 67899999874 2111 0011 45557999999999655 111 1235899999988888877777754
No 167
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=40.45 E-value=3 Score=30.51 Aligned_cols=44 Identities=23% Similarity=0.523 Sum_probs=23.9
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~ 262 (286)
|..|++|-.. ++- . + +|.+|..|-..... +..||.|..+...+.
T Consensus 1 e~~CP~C~~~-L~~----------~-~-~~~~C~~C~~~~~~------------~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 1 ENTCPKCQQE-LEW----------Q-G-GHYHCEACQKDYKK------------EAFCPDCGQPLEVLK 44 (70)
T ss_dssp --B-SSS-SB-EEE----------E-T-TEEEETTT--EEEE------------EEE-TTT-SB-EEEE
T ss_pred CCcCCCCCCc-cEE----------e-C-CEEECcccccccee------------cccCCCcccHHHHHH
Confidence 4689999995 432 1 2 78888888775543 248999999887554
No 168
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=39.87 E-value=18 Score=26.11 Aligned_cols=14 Identities=29% Similarity=1.042 Sum_probs=10.2
Q ss_pred cCcHHHHHHHHhhC
Q 023176 224 PFCISCIRNWRSSS 237 (286)
Q Consensus 224 ~fC~~Ci~~w~~~~ 237 (286)
.||..|+.+|....
T Consensus 11 gFCRNCLskWy~~a 24 (68)
T PF06844_consen 11 GFCRNCLSKWYREA 24 (68)
T ss_dssp S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999864
No 169
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=38.86 E-value=16 Score=24.97 Aligned_cols=17 Identities=29% Similarity=0.935 Sum_probs=8.9
Q ss_pred ceeecCCCCCcCcHHHHH
Q 023176 214 KFGLLSECDHPFCISCIR 231 (286)
Q Consensus 214 ~~~~l~~C~H~fC~~Ci~ 231 (286)
+|.- +.|++.||++|=.
T Consensus 21 ~y~C-~~C~~~FC~dCD~ 37 (51)
T PF07975_consen 21 RYRC-PKCKNHFCIDCDV 37 (51)
T ss_dssp EE---TTTT--B-HHHHH
T ss_pred eEEC-CCCCCccccCcCh
Confidence 4433 4799999999943
No 170
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=36.60 E-value=18 Score=34.13 Aligned_cols=58 Identities=28% Similarity=0.609 Sum_probs=36.0
Q ss_pred ccccccccccccCcc-------ccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176 195 IECSVCLDRVLSKPT-------AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (286)
Q Consensus 195 ~~C~IC~e~i~~~~~-------~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~ 262 (286)
-+|++=|..+. -|. ...+.|+.| +|||+-=. ..|-...+. -...+.||+||....+|.
T Consensus 291 PQCPVglnTL~-~P~~~~~~~~~~~QP~vYl-~CGHV~G~---H~WG~~e~~-----g~~~r~CPmC~~~gp~V~ 355 (429)
T KOG3842|consen 291 PQCPVGLNTLA-FPSKRRKRVVDEKQPWVYL-NCGHVHGY---HNWGVRENT-----GQRERECPMCRVVGPYVP 355 (429)
T ss_pred CCCCcccceee-cccccccccccccCCeEEE-eccccccc---ccccccccc-----CcccCcCCeeeeecceee
Confidence 56999888543 221 234568889 79996432 356543321 122479999999988543
No 171
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=36.40 E-value=29 Score=27.23 Aligned_cols=36 Identities=25% Similarity=0.553 Sum_probs=23.2
Q ss_pred CCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 222 DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 222 ~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
.=.||..||..+......+. .....-.||-||..-.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev--~~~~~W~CP~CrgiCn 72 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEV--LEDPNWKCPKCRGICN 72 (105)
T ss_pred cceehHhHHHHHHhhhHHHH--hcCCceECCCCCCeeC
Confidence 66799999988776432110 1123468999998543
No 172
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=34.98 E-value=37 Score=34.96 Aligned_cols=19 Identities=37% Similarity=0.898 Sum_probs=9.8
Q ss_pred ccccccccCCCCCCCCCccCCC
Q 023176 7 CKFFAHGACLKGEHCEFSHDWK 28 (286)
Q Consensus 7 C~~f~~G~C~~G~~C~f~H~~~ 28 (286)
|.|=++ |.. .+|.|+|...
T Consensus 588 Ck~~~k--Cta-sDC~~sH~~~ 606 (681)
T KOG3702|consen 588 CKFGKK--CTA-SDCNYSHAGR 606 (681)
T ss_pred cccccc--ccc-ccCcccccCC
Confidence 444444 444 5666666533
No 173
>PLN02195 cellulose synthase A
Probab=34.42 E-value=43 Score=36.25 Aligned_cols=56 Identities=21% Similarity=0.413 Sum_probs=42.9
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
+....|.||=|.|--+. ....|+--..|+-.-|..|..-=|+... ..||+|++++.
T Consensus 4 ~~~~~c~~cgd~~~~~~--~g~~fvaC~eC~~pvCrpCyeyer~eg~----------q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVDS--NGEAFVACHECSYPLCKACLEYEIKEGR----------KVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcCC--CCCeEEEeccCCCccccchhhhhhhcCC----------ccCCccCCccc
Confidence 44568999999765543 4568888888999999999965554432 49999999987
No 174
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=34.24 E-value=29 Score=32.80 Aligned_cols=49 Identities=24% Similarity=0.663 Sum_probs=0.0
Q ss_pred ccccccceeecCCCCCcCcHHHHH-------------------------------HHHhhCCCCCCCcCCCcCcccCCCc
Q 023176 208 PTAAERKFGLLSECDHPFCISCIR-------------------------------NWRSSSPTSGMDVNTALRACPICRK 256 (286)
Q Consensus 208 ~~~~~~~~~~l~~C~H~fC~~Ci~-------------------------------~w~~~~~~~~~~~~~~~~~CP~CR~ 256 (286)
+.|..|+-.--.+||-.||..|.. .|...... ..++..+.||-|++
T Consensus 329 ~EPD~rkvtC~~gCgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~as~~---TIk~tTkpCPkChv 405 (446)
T KOG0006|consen 329 PEPDQRKVTCEGGCGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAASKE---TIKKTTKPCPKCHV 405 (446)
T ss_pred cCCCCCcccCCCCchhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhhhhh---hhhhccCCCCCccC
Q ss_pred ccc
Q 023176 257 LSY 259 (286)
Q Consensus 257 ~~~ 259 (286)
+..
T Consensus 406 ptE 408 (446)
T KOG0006|consen 406 PTE 408 (446)
T ss_pred ccc
No 175
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.04 E-value=15 Score=33.71 Aligned_cols=53 Identities=25% Similarity=0.396 Sum_probs=37.2
Q ss_pred CcccccccccccccCccccccceeecCC-------CCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcc
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSE-------CDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~-------C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~ 257 (286)
.+..|.||... ++..+ ....-.++.. |+|..|..||..-..... ..||.||..
T Consensus 206 ~~~~c~ic~~~-~~~n~-~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~----------~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERI-YSEND-EKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG----------IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHH-hhccc-cccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh----------hcCCcccce
Confidence 45779999994 55221 2233345534 999999999998876542 589999975
No 176
>PF10283 zf-CCHH: Zinc-finger (CX5CX6HX5H) motif; InterPro: IPR019406 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type Znf motif that in humans is part of the APLF (aprataxin- and PNK-like) forkead association domain-containing protein []. The Znf is highly conserved both in primary sequence and in the spacing between the putative zinc coordinating residues, and is configured CX5CX6HX5H. Many of the proteins containing this Znf are involved in DNA strand break repair and/or contain domains implicated in DNA metabolism. This Znf motif appears to be specialised for the non-covalent binding of poly ADP-ribose; Aprataxin also appears to covalently bind poly ADP-ribose, but not through its Znf motif [].; PDB: 2KQC_A 2KUO_A 2KQE_A 2KQD_A 2KQB_A.
Probab=30.84 E-value=16 Score=21.48 Aligned_cols=8 Identities=50% Similarity=1.227 Sum_probs=4.7
Q ss_pred CCCCCCCC
Q 023176 141 NCPRGEKC 148 (286)
Q Consensus 141 ~C~~Gd~C 148 (286)
.|+||.+|
T Consensus 2 ~C~YG~~C 9 (26)
T PF10283_consen 2 PCKYGAKC 9 (26)
T ss_dssp E-TTGGG-
T ss_pred CCCcchhh
Confidence 47888888
No 177
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=30.66 E-value=51 Score=18.79 Aligned_cols=22 Identities=45% Similarity=1.143 Sum_probs=17.0
Q ss_pred CCCCCCCCccccCCChHHHHHHHHHH
Q 023176 154 DTCPTCGKQCLHPFRPEEREEHMKSC 179 (286)
Q Consensus 154 ~~c~~c~~~~l~p~~~~~~~e~~~~~ 179 (286)
..|+.||+. +.++.-..|+..|
T Consensus 3 ~~C~~CgR~----F~~~~l~~H~~~C 24 (25)
T PF13913_consen 3 VPCPICGRK----FNPDRLEKHEKIC 24 (25)
T ss_pred CcCCCCCCE----ECHHHHHHHHHhc
Confidence 468889864 6788888888776
No 178
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=30.43 E-value=35 Score=35.90 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=27.5
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCC
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSP 238 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~ 238 (286)
..-..|.||-=.|..- .+.-. +|+|+-..+|.++|+...+
T Consensus 1026 ~~~~~C~~C~l~V~gs------s~~Cg-~C~Hv~H~sc~~eWf~~gd 1065 (1081)
T KOG0309|consen 1026 GFTFQCAICHLAVRGS------SNFCG-TCGHVGHTSCMMEWFRTGD 1065 (1081)
T ss_pred cceeeeeeEeeEeecc------chhhc-cccccccHHHHHHHHhcCC
Confidence 3345588886654432 22334 6999999999999998754
No 179
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=29.45 E-value=13 Score=39.18 Aligned_cols=36 Identities=19% Similarity=0.649 Sum_probs=26.3
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHH
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~ 234 (286)
.....|-.|.-.+++- .+ +=+-|+|.+|+.|++.|-
T Consensus 227 g~~~mC~~C~~tlfn~------hw-~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 227 GIREMCDRCETTLFNI------HW-RCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred Ccchhhhhhcccccce------eE-EccccCCeeeecchhhcc
Confidence 3456788888876642 22 344699999999999993
No 180
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.49 E-value=79 Score=28.98 Aligned_cols=48 Identities=17% Similarity=0.379 Sum_probs=34.6
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
...|+|=-= .++ +..+|..|-.|||+|=..=+.+-.. ..|++|...+.
T Consensus 111 ~fiCPvtgl-eMn----g~~~F~~l~~CGcV~SerAlKeika-------------s~C~~C~a~y~ 158 (293)
T KOG3113|consen 111 RFICPVTGL-EMN----GKYRFCALRCCGCVFSERALKEIKA-------------SVCHVCGAAYQ 158 (293)
T ss_pred eeecccccc-eec----ceEEEEEEeccceeccHHHHHHhhh-------------ccccccCCccc
Confidence 457877433 233 3468888889999998877776652 38999999875
No 181
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=28.21 E-value=88 Score=21.81 Aligned_cols=35 Identities=14% Similarity=0.083 Sum_probs=27.8
Q ss_pred cCcccCCCccccccccCceeeCCcHHHHHHHHHHH
Q 023176 248 LRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYK 282 (286)
Q Consensus 248 ~~~CP~CR~~~~~~~p~~~~~~~~~~k~~li~~yk 282 (286)
...||.|-.......|..|-..|..-|-.+.-+-+
T Consensus 17 k~~CP~CG~~t~~~~P~rfSp~D~y~~yR~~~kk~ 51 (56)
T PRK13130 17 KEICPVCGGKTKNPHPPRFSPEDKYGKYRRALKKR 51 (56)
T ss_pred cccCcCCCCCCCCCCCCCCCCCCccHHHHHHHHHH
Confidence 46899999999999999998888777766665543
No 182
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.90 E-value=43 Score=30.10 Aligned_cols=28 Identities=29% Similarity=0.643 Sum_probs=20.2
Q ss_pred CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccccc
Q 023176 225 FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (286)
Q Consensus 225 fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p 263 (286)
-|.+|-++--.+. .+||+|+..+..=.|
T Consensus 196 ~C~sC~qqIHRNA-----------PiCPlCK~KsRSrnp 223 (230)
T PF10146_consen 196 TCQSCHQQIHRNA-----------PICPLCKAKSRSRNP 223 (230)
T ss_pred hhHhHHHHHhcCC-----------CCCcccccccccCCC
Confidence 4788887765443 399999999875444
No 183
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=25.56 E-value=48 Score=29.87 Aligned_cols=28 Identities=29% Similarity=0.726 Sum_probs=20.6
Q ss_pred CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccccc
Q 023176 225 FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (286)
Q Consensus 225 fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p 263 (286)
-|++|-++.-.+. .+||+|+..+..-.|
T Consensus 251 ~ClsChqqIHRNA-----------PiCPlCKaKsRSrNP 278 (286)
T KOG4451|consen 251 VCLSCHQQIHRNA-----------PICPLCKAKSRSRNP 278 (286)
T ss_pred HHHHHHHHHhcCC-----------CCCcchhhccccCCC
Confidence 5888887765443 499999999875554
No 184
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.43 E-value=62 Score=29.55 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=26.4
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHh
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRS 235 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~ 235 (286)
.-.-|+.||. ...+| +|. .=||.||..||.+..-
T Consensus 42 ~FdcCsLtLq-Pc~dP-------vit-~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQ-PCRDP-------VIT-PDGYLFDREAILEYIL 75 (303)
T ss_pred Ccceeeeecc-cccCC-------ccC-CCCeeeeHHHHHHHHH
Confidence 3466999999 57777 565 4899999999987654
No 185
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=23.74 E-value=12 Score=22.66 Aligned_cols=29 Identities=28% Similarity=0.574 Sum_probs=14.1
Q ss_pred CCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcc
Q 023176 222 DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (286)
Q Consensus 222 ~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~ 257 (286)
+|-||..|-..-..... ...+.||.|...
T Consensus 2 ~~rfC~~CG~~t~~~~~-------g~~r~C~~Cg~~ 30 (32)
T PF09297_consen 2 NHRFCGRCGAPTKPAPG-------GWARRCPSCGHE 30 (32)
T ss_dssp TTSB-TTT--BEEE-SS-------SS-EEESSSS-E
T ss_pred CCcccCcCCccccCCCC-------cCEeECCCCcCE
Confidence 46778777654333221 234789998764
No 186
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=23.44 E-value=13 Score=25.45 Aligned_cols=39 Identities=21% Similarity=0.516 Sum_probs=19.6
Q ss_pred ccccc--cccccccCccccccceeecCCCCCcCcHHHHHHHH
Q 023176 195 IECSV--CLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (286)
Q Consensus 195 ~~C~I--C~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~ 234 (286)
.-|+- |-.. +..........+.=+.|++.||..|-..|-
T Consensus 19 ~~Cp~~~C~~~-~~~~~~~~~~~~~C~~C~~~fC~~C~~~~H 59 (64)
T PF01485_consen 19 RWCPNPDCEYI-IEKDDGCNSPIVTCPSCGTEFCFKCGEPWH 59 (64)
T ss_dssp C--TTSST----ECS-SSTTS--CCTTSCCSEECSSSTSESC
T ss_pred cCCCCCCCccc-EEecCCCCCCeeECCCCCCcCccccCcccC
Confidence 46877 8774 433322222124444599999999988883
No 187
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=21.67 E-value=64 Score=23.00 Aligned_cols=14 Identities=29% Similarity=0.605 Sum_probs=10.9
Q ss_pred CcCcccCCCccccc
Q 023176 247 ALRACPICRKLSYF 260 (286)
Q Consensus 247 ~~~~CP~CR~~~~~ 260 (286)
.+..||+|++.+.+
T Consensus 5 ~~v~CP~C~k~~~w 18 (62)
T PRK00418 5 ITVNCPTCGKPVEW 18 (62)
T ss_pred ccccCCCCCCcccc
Confidence 35689999998753
No 188
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=21.29 E-value=33 Score=34.73 Aligned_cols=62 Identities=15% Similarity=0.241 Sum_probs=46.0
Q ss_pred HhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCce
Q 023176 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVI 266 (286)
Q Consensus 189 ~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~ 266 (286)
.++.....|++|+. ..... +.+ +++.++.|-++..+++.|.... -.|+.+++.+.++.-...
T Consensus 255 deq~~~~~~~~~~~-~~~~~---eqk-~l~~~~~~~~g~tsl~~e~~~~-----------~v~~~~~tk~~~~~~e~r 316 (553)
T KOG4430|consen 255 DEQENKNACGLCLS-EADAK---EQK-GLEGNNQRQTGATSLMEEEAVE-----------SVCPLRVTKVRTISKEAR 316 (553)
T ss_pred hhhhcccchhhchh-hHhHH---Hhh-hhhhcccchhhhhhhhhhhhhh-----------hhhhcccccccccccccc
Confidence 34556678999998 44432 122 7888999999999999998754 289999999886655443
Done!