Query 023176
Match_columns 286
No_of_seqs 242 out of 2071
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 17:37:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023176.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023176hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9n_A Cleavage and polyadenyl 99.6 7.9E-16 2.7E-20 114.0 4.0 56 3-59 9-65 (77)
2 2rhk_C Cleavage and polyadenyl 99.6 5.8E-16 2E-20 113.2 2.0 55 3-58 15-70 (72)
3 3ztg_A E3 ubiquitin-protein li 99.4 1.2E-13 4.1E-18 104.7 6.2 74 190-284 9-82 (92)
4 2cqe_A KIAA1064 protein; CCCH 99.4 2.2E-13 7.7E-18 105.2 4.3 49 3-56 12-61 (98)
5 1t1h_A Gspef-atpub14, armadill 99.4 3.4E-13 1.2E-17 99.1 4.8 69 190-284 4-74 (78)
6 1m9o_A Tristetraproline; Cys3H 99.4 1.8E-13 6.3E-18 100.8 2.6 54 3-56 11-75 (77)
7 3d2q_A Muscleblind-like protei 99.4 1.1E-13 3.6E-18 100.6 0.9 54 3-57 5-66 (70)
8 2yur_A Retinoblastoma-binding 99.3 8E-13 2.7E-17 96.5 4.5 52 190-258 11-62 (74)
9 2ckl_A Polycomb group ring fin 99.3 5.6E-13 1.9E-17 104.2 3.2 73 191-283 12-84 (108)
10 2y43_A E3 ubiquitin-protein li 99.3 1.4E-12 4.8E-17 100.2 4.9 68 193-284 21-88 (99)
11 2e5s_A Otthump00000018578; ZF- 99.3 1.1E-13 3.7E-18 106.9 -1.7 55 3-58 19-81 (98)
12 4ayc_A E3 ubiquitin-protein li 99.3 3.5E-12 1.2E-16 104.1 7.2 49 193-261 52-100 (138)
13 2csy_A Zinc finger protein 183 99.3 2.1E-12 7.3E-17 95.6 5.0 50 190-259 11-60 (81)
14 3lrq_A E3 ubiquitin-protein li 99.3 2.5E-12 8.7E-17 99.3 5.2 51 191-259 19-69 (100)
15 2djb_A Polycomb group ring fin 99.3 2.5E-12 8.5E-17 93.2 4.5 51 191-260 12-62 (72)
16 3fl2_A E3 ubiquitin-protein li 99.3 4.4E-12 1.5E-16 101.4 6.0 70 192-284 50-119 (124)
17 3ng2_A RNF4, snurf, ring finge 99.3 2.3E-12 7.9E-17 92.6 3.8 58 189-259 5-62 (71)
18 2ea6_A Ring finger protein 4; 99.2 3.5E-12 1.2E-16 90.9 3.6 56 191-259 12-67 (69)
19 1iym_A EL5; ring-H2 finger, ub 99.2 3.8E-12 1.3E-16 87.0 3.4 51 192-258 3-53 (55)
20 2kr4_A Ubiquitin conjugation f 99.2 1E-11 3.4E-16 93.3 5.8 69 191-284 11-79 (85)
21 2cqe_A KIAA1064 protein; CCCH 99.2 1.1E-11 3.6E-16 95.8 6.1 33 22-54 2-35 (98)
22 2xeu_A Ring finger protein 4; 99.2 4.1E-12 1.4E-16 89.3 3.2 54 193-259 2-55 (64)
23 2kiz_A E3 ubiquitin-protein li 99.2 1E-11 3.5E-16 88.9 5.2 58 190-264 10-67 (69)
24 1g25_A CDK-activating kinase a 99.2 9.6E-12 3.3E-16 88.2 4.5 53 193-259 2-54 (65)
25 1jm7_A BRCA1, breast cancer ty 99.2 1E-11 3.4E-16 97.1 4.9 51 192-259 19-69 (112)
26 2ecy_A TNF receptor-associated 99.2 1E-11 3.4E-16 88.4 4.3 51 190-259 11-61 (66)
27 2ysl_A Tripartite motif-contai 99.2 9.8E-12 3.3E-16 89.8 4.3 53 190-259 16-68 (73)
28 2ep4_A Ring finger protein 24; 99.2 1.1E-11 3.9E-16 89.9 4.6 56 190-262 11-66 (74)
29 3d2n_A Muscleblind-like protei 99.2 4.7E-12 1.6E-16 94.8 2.4 54 3-57 8-67 (83)
30 2d8t_A Dactylidin, ring finger 99.2 6.6E-12 2.3E-16 90.7 2.8 50 190-259 11-60 (71)
31 2yu4_A E3 SUMO-protein ligase 99.2 1.7E-11 5.9E-16 93.7 5.2 74 192-285 5-83 (94)
32 1z6u_A NP95-like ring finger p 99.2 1.6E-11 5.5E-16 101.8 5.2 71 192-285 76-146 (150)
33 1wgm_A Ubiquitin conjugation f 99.2 2.4E-11 8.1E-16 93.8 5.5 69 191-284 19-88 (98)
34 2ecm_A Ring finger and CHY zin 99.2 1.7E-11 5.9E-16 83.6 4.2 51 192-258 3-53 (55)
35 2ecl_A Ring-box protein 2; RNF 99.2 1.5E-11 5.1E-16 91.4 4.0 58 192-260 13-76 (81)
36 2kre_A Ubiquitin conjugation f 99.2 2E-11 6.8E-16 94.5 4.8 69 191-284 26-94 (100)
37 2ysj_A Tripartite motif-contai 99.2 2.1E-11 7.3E-16 85.8 4.4 48 190-254 16-63 (63)
38 1chc_A Equine herpes virus-1 r 99.2 1.7E-11 5.8E-16 87.4 3.8 54 192-264 3-56 (68)
39 2egp_A Tripartite motif-contai 99.1 9.5E-12 3.3E-16 91.2 2.3 57 190-259 8-64 (79)
40 1m9o_A Tristetraproline; Cys3H 99.1 1.4E-11 4.9E-16 90.6 3.0 64 30-155 10-75 (77)
41 2ct2_A Tripartite motif protei 99.1 3E-11 1E-15 90.3 4.6 57 190-259 11-67 (88)
42 2ect_A Ring finger protein 126 99.1 2E-11 6.8E-16 89.5 3.5 52 191-259 12-63 (78)
43 2ckl_B Ubiquitin ligase protei 99.1 2.7E-11 9.3E-16 101.5 4.6 70 192-283 52-121 (165)
44 2rhk_C Cleavage and polyadenyl 99.1 2.7E-11 9.3E-16 88.3 3.8 27 29-55 13-39 (72)
45 2d9n_A Cleavage and polyadenyl 99.1 6.8E-11 2.3E-15 87.3 5.9 27 29-55 7-33 (77)
46 1x4j_A Ring finger protein 38; 99.1 2.6E-11 9E-16 88.3 3.4 52 191-259 20-71 (75)
47 3l11_A E3 ubiquitin-protein li 99.1 9.9E-12 3.4E-16 98.0 0.8 50 192-260 13-62 (115)
48 1v87_A Deltex protein 2; ring- 99.1 5E-11 1.7E-15 93.6 4.8 65 190-261 21-95 (114)
49 2l0b_A E3 ubiquitin-protein li 99.1 3.9E-11 1.3E-15 91.0 3.9 52 191-259 37-88 (91)
50 2ecw_A Tripartite motif-contai 99.1 6E-11 2.1E-15 87.7 4.7 55 191-259 16-70 (85)
51 2ecj_A Tripartite motif-contai 99.1 6E-11 2.1E-15 81.7 4.3 47 191-254 12-58 (58)
52 1jm7_B BARD1, BRCA1-associated 99.1 3.9E-11 1.3E-15 95.1 3.6 66 192-283 20-85 (117)
53 2ecv_A Tripartite motif-contai 99.1 6.2E-11 2.1E-15 87.6 4.4 55 191-259 16-70 (85)
54 2rpp_A Muscleblind-like protei 99.1 2.4E-11 8.1E-16 92.0 1.1 53 4-57 17-75 (89)
55 3hct_A TNF receptor-associated 99.1 6.4E-11 2.2E-15 93.9 3.4 51 190-259 14-64 (118)
56 1e4u_A Transcriptional repress 99.0 1.1E-10 3.9E-15 86.2 4.2 54 191-259 8-61 (78)
57 4ap4_A E3 ubiquitin ligase RNF 99.0 7.7E-11 2.6E-15 94.1 3.3 55 192-259 5-59 (133)
58 1rmd_A RAG1; V(D)J recombinati 99.0 1.3E-10 4.4E-15 91.7 4.4 47 194-259 23-69 (116)
59 1bor_A Transcription factor PM 99.0 2.9E-11 9.9E-16 83.6 0.5 46 191-259 3-48 (56)
60 2c2l_A CHIP, carboxy terminus 99.0 2.7E-10 9.2E-15 102.0 5.3 69 192-284 206-274 (281)
61 2ecn_A Ring finger protein 141 99.0 6.6E-11 2.2E-15 84.9 1.0 50 190-260 11-60 (70)
62 3knv_A TNF receptor-associated 99.0 1.4E-10 4.9E-15 95.1 2.8 50 190-258 27-76 (141)
63 3dpl_R Ring-box protein 1; ubi 99.0 3.6E-10 1.2E-14 88.4 4.4 56 192-260 35-101 (106)
64 2f42_A STIP1 homology and U-bo 98.9 2.3E-09 7.8E-14 91.3 8.5 69 192-284 104-172 (179)
65 3d2q_A Muscleblind-like protei 98.9 6.2E-10 2.1E-14 80.6 3.7 59 31-154 5-64 (70)
66 2vje_A E3 ubiquitin-protein li 98.9 3.8E-10 1.3E-14 80.1 2.4 56 190-263 4-60 (64)
67 4ic3_A E3 ubiquitin-protein li 98.9 3.8E-10 1.3E-14 82.3 1.7 47 192-262 22-69 (74)
68 2e5s_A Otthump00000018578; ZF- 98.9 5.7E-10 1.9E-14 86.0 2.0 60 31-155 19-79 (98)
69 4ap4_A E3 ubiquitin ligase RNF 98.8 1.1E-09 3.7E-14 87.4 3.0 56 191-259 69-124 (133)
70 3htk_C E3 SUMO-protein ligase 98.8 2E-09 7E-14 96.3 4.4 73 190-284 177-251 (267)
71 2y1n_A E3 ubiquitin-protein li 98.8 2.7E-09 9.3E-14 100.7 5.4 53 190-261 328-380 (389)
72 4a0k_B E3 ubiquitin-protein li 98.8 5.7E-10 1.9E-14 88.7 0.4 56 193-260 47-112 (117)
73 2vje_B MDM4 protein; proto-onc 98.8 1.5E-09 5E-14 76.8 2.5 54 191-262 4-58 (63)
74 1wim_A KIAA0161 protein; ring 98.8 1.2E-09 4.2E-14 83.0 1.8 57 192-257 3-61 (94)
75 3hcs_A TNF receptor-associated 98.8 2.3E-09 8E-14 89.9 3.6 51 190-259 14-64 (170)
76 3d2n_A Muscleblind-like protei 98.8 3.6E-09 1.2E-13 79.1 4.0 58 31-155 8-66 (83)
77 2ecg_A Baculoviral IAP repeat- 98.8 1.7E-09 5.8E-14 78.9 2.0 46 193-262 24-70 (75)
78 2rpp_A Muscleblind-like protei 98.7 6E-09 2.1E-13 78.7 4.1 70 18-155 4-74 (89)
79 2yho_A E3 ubiquitin-protein li 98.7 2.7E-09 9.4E-14 78.8 0.8 46 193-262 17-63 (79)
80 2d8s_A Cellular modulator of i 98.7 1E-08 3.5E-13 76.0 3.7 55 190-260 11-70 (80)
81 2ea5_A Cell growth regulator w 98.5 2.9E-08 9.8E-13 71.2 2.7 49 190-262 11-60 (68)
82 2ct0_A Non-SMC element 1 homol 98.5 7.8E-08 2.7E-12 70.2 4.9 54 194-264 15-68 (74)
83 3u9g_A Zinc finger CCCH-type a 98.4 2.9E-07 9.8E-12 80.1 6.0 49 5-54 90-177 (229)
84 3t6p_A Baculoviral IAP repeat- 98.3 7.9E-08 2.7E-12 89.7 0.9 47 192-262 293-340 (345)
85 3vk6_A E3 ubiquitin-protein li 98.3 2.7E-07 9.2E-12 70.5 3.6 47 197-261 4-50 (101)
86 2bay_A PRE-mRNA splicing facto 98.3 4.4E-07 1.5E-11 63.7 2.9 52 194-264 3-56 (61)
87 1vyx_A ORF K3, K3RING; zinc-bi 98.1 3.1E-06 1.1E-10 59.1 4.2 52 191-259 3-58 (60)
88 3k1l_B Fancl; UBC, ring, RWD, 98.0 2.1E-06 7.2E-11 79.5 2.1 66 193-259 307-372 (381)
89 2d9m_A Zinc finger CCCH-type d 97.4 0.00019 6.5E-09 51.1 4.4 26 130-155 19-44 (69)
90 2d9m_A Zinc finger CCCH-type d 97.2 0.00013 4.4E-09 52.0 1.7 35 21-57 11-45 (69)
91 3u9g_A Zinc finger CCCH-type a 96.9 0.00043 1.5E-08 60.2 2.9 44 4-57 151-199 (229)
92 2lhn_A Nuclear polyadenylated 95.8 0.00023 7.7E-09 52.4 0.0 42 4-54 9-50 (80)
93 3nw0_A Non-structural maintena 96.6 0.0041 1.4E-07 54.8 7.0 57 193-266 179-235 (238)
94 2jun_A Midline-1; B-BOX, TRIM, 96.4 0.001 3.6E-08 50.3 1.5 34 193-234 2-38 (101)
95 2fc6_A Nuclear, target of EGR1 96.4 0.0053 1.8E-07 40.6 4.6 31 128-158 17-48 (50)
96 2fc6_A Nuclear, target of EGR1 95.9 0.0024 8.2E-08 42.2 1.2 24 32-55 20-44 (50)
97 3u1l_A PRE-mRNA-splicing facto 95.0 0.0077 2.6E-07 53.2 1.8 25 131-155 70-94 (240)
98 3u1l_A PRE-mRNA-splicing facto 94.4 0.0087 3E-07 52.8 0.6 27 32-58 70-96 (240)
99 2lhn_A Nuclear polyadenylated 88.5 0.079 2.7E-06 38.7 0.0 41 5-55 32-72 (80)
100 1weo_A Cellulose synthase, cat 88.2 0.8 2.8E-05 33.9 5.0 59 191-261 13-71 (93)
101 2ko5_A Ring finger protein Z; 83.7 0.34 1.2E-05 36.3 1.1 45 194-259 28-72 (99)
102 3m62_A Ubiquitin conjugation f 76.8 6.8 0.00023 40.8 8.4 67 190-283 887-956 (968)
103 3v33_A Ribonuclease ZC3H12A; r 68.4 1 3.6E-05 39.0 0.0 24 130-155 191-214 (223)
104 2jmo_A Parkin; IBR, E3 ligase, 60.1 0.73 2.5E-05 33.3 -2.2 16 220-235 55-70 (80)
105 2lri_C Autoimmune regulator; Z 58.0 6.3 0.00022 27.2 2.5 51 192-258 10-60 (66)
106 3ql9_A Transcriptional regulat 54.0 14 0.00047 29.1 4.2 51 191-257 54-111 (129)
107 2lbm_A Transcriptional regulat 48.7 19 0.00067 28.7 4.3 51 191-257 60-117 (142)
108 2ct7_A Ring finger protein 31; 48.1 1.1 3.6E-05 32.8 -3.1 21 217-237 45-65 (86)
109 2ysm_A Myeloid/lymphoid or mix 43.9 5.1 0.00018 30.2 0.2 38 191-234 4-41 (111)
110 2apo_B Ribosome biogenesis pro 36.6 41 0.0014 22.8 3.8 38 248-285 18-55 (60)
111 2l5u_A Chromodomain-helicase-D 35.6 19 0.00065 24.1 2.0 52 190-257 7-58 (61)
112 3a1b_A DNA (cytosine-5)-methyl 35.0 25 0.00086 28.6 3.0 67 191-267 76-146 (159)
113 1z60_A TFIIH basal transcripti 34.8 14 0.00049 25.0 1.2 43 195-254 16-58 (59)
114 1mm2_A MI2-beta; PHD, zinc fin 33.5 9.4 0.00032 25.7 0.1 51 191-257 6-56 (61)
115 2yw8_A RUN and FYVE domain-con 33.2 15 0.00052 26.2 1.3 58 190-257 15-72 (82)
116 3fyb_A Protein of unknown func 30.4 18 0.00062 27.1 1.3 13 224-236 41-53 (104)
117 2o35_A Hypothetical protein DU 29.6 21 0.00072 26.8 1.5 14 224-237 42-55 (105)
118 2zet_C Melanophilin; complex, 29.5 77 0.0026 25.4 5.0 64 193-270 67-130 (153)
119 1wd2_A Ariadne-1 protein homol 29.2 6.5 0.00022 26.6 -1.3 40 194-236 6-47 (60)
120 1f62_A Transcription factor WS 27.6 38 0.0013 21.5 2.4 49 196-257 2-50 (51)
121 3mjh_B Early endosome antigen 27.6 13 0.00044 22.4 0.0 13 192-204 3-15 (34)
122 3u5n_A E3 ubiquitin-protein li 27.1 16 0.00053 30.7 0.4 54 190-259 3-56 (207)
123 1x4u_A Zinc finger, FYVE domai 26.1 19 0.00065 25.7 0.7 36 192-232 12-47 (84)
124 1zbd_B Rabphilin-3A; G protein 26.0 67 0.0023 25.2 4.0 68 192-271 53-121 (134)
125 3t7l_A Zinc finger FYVE domain 24.0 35 0.0012 24.7 1.8 55 193-257 19-73 (90)
126 2cs3_A Protein C14ORF4, MY039 22.8 2E+02 0.007 20.7 5.6 74 192-278 13-87 (93)
127 2pv0_B DNA (cytosine-5)-methyl 22.5 51 0.0017 30.7 3.0 67 191-267 90-160 (386)
128 2hgo_A CASSIICOLIN; toxin, dis 22.3 16 0.00054 20.2 -0.3 15 33-49 4-18 (27)
129 2kqb_A Aprataxin and PNK-like 22.2 60 0.002 23.8 2.7 39 13-51 15-67 (89)
130 3o36_A Transcription intermedi 21.7 24 0.00082 28.9 0.6 50 193-258 3-52 (184)
131 4fo9_A E3 SUMO-protein ligase 21.3 95 0.0032 28.5 4.6 51 192-259 213-265 (360)
132 2k16_A Transcription initiatio 21.0 25 0.00087 24.3 0.5 54 192-258 16-69 (75)
133 1wil_A KIAA1045 protein; ring 20.5 1.2E+02 0.004 22.1 3.9 63 191-260 12-79 (89)
134 1dvp_A HRS, hepatocyte growth 20.4 29 0.00098 29.3 0.8 36 194-234 161-196 (220)
135 3i2d_A E3 SUMO-protein ligase 20.3 99 0.0034 28.5 4.5 50 192-258 247-298 (371)
No 1
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=7.9e-16 Score=113.99 Aligned_cols=56 Identities=38% Similarity=0.902 Sum_probs=52.3
Q ss_pred CCccccccccccCCCCCCCCCccCCCCCCCcccccccC-CCCCCCCCcccCCCCCCCC
Q 023176 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKPSRS 59 (286)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~-G~C~~G~~C~y~H~~~~~~ 59 (286)
|+++|+||++|.|++|++|+|+|+.+..+.++|+||++ |.|. |++|+|.|..+...
T Consensus 9 k~~~C~~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 9 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECS-NKECPFLHIDPESK 65 (77)
T ss_dssp TTSBCHHHHTTCCSCTTSSSSBCSCCTTTSCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred cceeCHhHccCcCCCCCCCCCccccccCcCCCCcccCCCCccC-CCCeeccCCCcccc
Confidence 78999999999999999999999998888899999998 9999 99999999997644
No 2
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.56 E-value=5.8e-16 Score=113.21 Aligned_cols=55 Identities=38% Similarity=0.918 Sum_probs=51.3
Q ss_pred CCccccccccccCCCCCCCCCccCCCCCCCcccccccC-CCCCCCCCcccCCCCCCC
Q 023176 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQK-GFCSYGSRCRYEHVKPSR 58 (286)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~-G~C~~G~~C~y~H~~~~~ 58 (286)
++++|+||++|.|++|++|+|+|+++..+.++|+||++ |.|.+ ++|+|.|..++.
T Consensus 15 k~~vCk~fl~G~C~~G~~C~fsH~~~~~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 15 KTVVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp CCSBCHHHHTTCCCCGGGSSSBCSCCTTSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred cCeeCHHHhcCCCCCCCCCCCccccccccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 78899999999999999999999998888999999998 99998 999999998764
No 3
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.44 E-value=1.2e-13 Score=104.72 Aligned_cols=74 Identities=20% Similarity=0.547 Sum_probs=55.0
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeC
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY 269 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~ 269 (286)
...++++|+||++ ++.+| ++++.|||+||..||..|+.... ...||+||+.+.. +.. +.
T Consensus 9 ~~~~~~~C~IC~~-~~~~p-------~~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~Cr~~~~~--~~~--~~ 67 (92)
T 3ztg_A 9 PIPDELLCLICKD-IMTDA-------VVIPCCGNSYCDECIRTALLESD---------EHTCPTCHQNDVS--PDA--LI 67 (92)
T ss_dssp CCCTTTEETTTTE-ECSSC-------EECTTTCCEECHHHHHHHHHHCT---------TCCCTTTCCSSCC--TTS--CE
T ss_pred cCCcCCCCCCCCh-hhcCc-------eECCCCCCHHHHHHHHHHHHhcC---------CCcCcCCCCcCCC--ccc--cC
Confidence 3456899999999 67777 67766999999999999997543 2599999998621 111 22
Q ss_pred CcHHHHHHHHHHHhh
Q 023176 270 TPEEKQEIIDSYKSK 284 (286)
Q Consensus 270 ~~~~k~~li~~yk~~ 284 (286)
.+...+++|+.|+..
T Consensus 68 ~n~~l~~~i~~~~~~ 82 (92)
T 3ztg_A 68 ANKFLRQAVNNFKNE 82 (92)
T ss_dssp ECHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 356677888888763
No 4
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.38 E-value=2.2e-13 Score=105.23 Aligned_cols=49 Identities=37% Similarity=0.885 Sum_probs=46.0
Q ss_pred CCccccccccccCCCCCCCCCccCCCCCCCccccccc-CCCCCCCCCcccCCCCC
Q 023176 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQ-KGFCSYGSRCRYEHVKP 56 (286)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~-~G~C~~G~~C~y~H~~~ 56 (286)
|+.+|+||++|.|++|++|+|+|+ ..+|+||+ +|.|.+|++|+|.|...
T Consensus 12 k~~lC~~f~~G~C~~G~~C~f~H~-----~~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 12 KRELCKFYITGFCARAENCPYMHG-----DFPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp CCSBCTTTTTTCCSCSTTCSSBSS-----SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CCccCcccccCcCCCCCCCCCCCC-----CCcCcCcccCCcCCCCCCCcccCCCC
Confidence 788999999999999999999998 68899996 99999999999999964
No 5
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.37 E-value=3.4e-13 Score=99.08 Aligned_cols=69 Identities=14% Similarity=0.386 Sum_probs=53.5
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc--ccccCcee
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPSVIW 267 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~--~~~p~~~~ 267 (286)
+..+++.|+||++ ++.+| +++ .|||+||..||.+|+.... .+||+||..+. .++|
T Consensus 4 ~~~~~~~C~IC~~-~~~~P-------v~~-~CgH~fc~~Ci~~~~~~~~----------~~CP~C~~~~~~~~l~~---- 60 (78)
T 1t1h_A 4 EFPEYFRCPISLE-LMKDP-------VIV-STGQTYERSSIQKWLDAGH----------KTCPKSQETLLHAGLTP---- 60 (78)
T ss_dssp CCSSSSSCTTTSC-CCSSE-------EEE-TTTEEEEHHHHHHHHTTTC----------CBCTTTCCBCSSCCCEE----
T ss_pred CCcccCCCCCccc-cccCC-------EEc-CCCCeecHHHHHHHHHHCc----------CCCCCCcCCCChhhCcc----
Confidence 3456899999999 68887 677 4999999999999997422 58999999875 2333
Q ss_pred eCCcHHHHHHHHHHHhh
Q 023176 268 YYTPEEKQEIIDSYKSK 284 (286)
Q Consensus 268 ~~~~~~k~~li~~yk~~ 284 (286)
+...+++|+.|+++
T Consensus 61 ---n~~l~~~i~~~~~~ 74 (78)
T 1t1h_A 61 ---NYVLKSLIALWCES 74 (78)
T ss_dssp ---CTTTHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHH
Confidence 34467789999865
No 6
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.36 E-value=1.8e-13 Score=100.84 Aligned_cols=54 Identities=33% Similarity=0.893 Sum_probs=25.0
Q ss_pred CCccccccc-cccCCCCCCCCCccCCCCC---------CCccccccc-CCCCCCCCCcccCCCCC
Q 023176 3 KRVLCKFFA-HGACLKGEHCEFSHDWKDP---------PNNICTYYQ-KGFCSYGSRCRYEHVKP 56 (286)
Q Consensus 3 k~~~C~~f~-~G~C~~G~~C~f~H~~~~~---------~~~~C~~f~-~G~C~~G~~C~y~H~~~ 56 (286)
|+.+|++|+ +|.|++|++|+|+|+.... ++.+|++|. .|.|.+|++|+|+|...
T Consensus 11 kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 11 KTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp CSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC--------------------------------
T ss_pred cchhCHHhhhCCCcCCCCCccCCCCChhhccccccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 789999996 8999999999999997642 267998665 89999999999999874
No 7
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.35 E-value=1.1e-13 Score=100.63 Aligned_cols=54 Identities=33% Similarity=0.790 Sum_probs=47.2
Q ss_pred CCccccccccccCCCCC-CCCCccCCC-------CCCCcccccccCCCCCCCCCcccCCCCCC
Q 023176 3 KRVLCKFFAHGACLKGE-HCEFSHDWK-------DPPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (286)
Q Consensus 3 k~~~C~~f~~G~C~~G~-~C~f~H~~~-------~~~~~~C~~f~~G~C~~G~~C~y~H~~~~ 57 (286)
+..+|++|++|.|++|+ .|+|+|+.+ ..+.++|.+|++|.|.+| +|+|.|..+.
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~ 66 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSRE-KCKYFHPPAH 66 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCT-TCCSBCCCHH
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCC-CcCeeCCHHH
Confidence 56799999999999999 599999764 345789999999999988 9999998754
No 8
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.33 E-value=8e-13 Score=96.47 Aligned_cols=52 Identities=25% Similarity=0.666 Sum_probs=42.5
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
...++++|+||++ ++.+| +++++|||+||..||.+|+.... ...||+||+.+
T Consensus 11 ~~~~~~~C~IC~~-~~~~p-------~~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~Cr~~~ 62 (74)
T 2yur_A 11 PIPDELLCLICKD-IMTDA-------VVIPCCGNSYCDECIRTALLESD---------EHTCPTCHQND 62 (74)
T ss_dssp CSCGGGSCSSSCC-CCTTC-------EECSSSCCEECTTHHHHHHHHSS---------SSCCSSSCCSS
T ss_pred cCCCCCCCcCCCh-HHhCC-------eEcCCCCCHHHHHHHHHHHHhcC---------CCcCCCCCCcC
Confidence 3456789999999 57777 67766999999999999998643 25899999964
No 9
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.32 E-value=5.6e-13 Score=104.17 Aligned_cols=73 Identities=23% Similarity=0.483 Sum_probs=52.4
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~ 270 (286)
..+++.|+||++ ++.+| +++..|||+||..||.+|.... ..||+||..+....|... +..
T Consensus 12 ~~~~~~C~IC~~-~~~~p-------~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~~~-l~~ 71 (108)
T 2ckl_A 12 LNPHLMCVLCGG-YFIDA-------TTIIECLHSFCKTCIVRYLETS-----------KYCPICDVQVHKTRPLLN-IRS 71 (108)
T ss_dssp HGGGTBCTTTSS-BCSSE-------EEETTTCCEEEHHHHHHHHTSC-----------SBCTTTCCBSCSSCGGGG-EEE
T ss_pred cCCcCCCccCCh-HHhCc-------CEeCCCCChhhHHHHHHHHHhC-----------CcCcCCCccccccCcccc-cCc
Confidence 355899999999 56666 5664699999999999999653 489999999765433222 223
Q ss_pred cHHHHHHHHHHHh
Q 023176 271 PEEKQEIIDSYKS 283 (286)
Q Consensus 271 ~~~k~~li~~yk~ 283 (286)
+...+.||+.|..
T Consensus 72 n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 72 DKTLQDIVYKLVP 84 (108)
T ss_dssp CHHHHHHHHHHST
T ss_pred CHHHHHHHHHHhh
Confidence 4456666666654
No 10
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.4e-12 Score=100.24 Aligned_cols=68 Identities=22% Similarity=0.566 Sum_probs=51.3
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCcH
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPE 272 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~~ 272 (286)
++..|+||++ ++.+| .++..|||.||..||..|...+ ..||+||..+.. + . +..+.
T Consensus 21 ~~~~C~IC~~-~~~~p-------~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~--~-~--l~~n~ 76 (99)
T 2y43_A 21 DLLRCGICFE-YFNIA-------MIIPQCSHNYCSLCIRKFLSYK-----------TQCPTCCVTVTE--P-D--LKNNR 76 (99)
T ss_dssp HHTBCTTTCS-BCSSE-------EECTTTCCEEEHHHHHHHHTTC-----------CBCTTTCCBCCG--G-G--CEECH
T ss_pred CCCCcccCCh-hhCCc-------CEECCCCCHhhHHHHHHHHHCC-----------CCCCCCCCcCCh--h-h--CCcCH
Confidence 4678999999 56666 5665699999999999999743 489999998763 1 1 22345
Q ss_pred HHHHHHHHHHhh
Q 023176 273 EKQEIIDSYKSK 284 (286)
Q Consensus 273 ~k~~li~~yk~~ 284 (286)
.-++||+.|++.
T Consensus 77 ~l~~~i~~~~~~ 88 (99)
T 2y43_A 77 ILDELVKSLNFA 88 (99)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 577788888753
No 11
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1.1e-13 Score=106.93 Aligned_cols=55 Identities=33% Similarity=0.741 Sum_probs=48.6
Q ss_pred CCccccccccccCCCCC-CCCCccCCCC-------CCCcccccccCCCCCCCCCcccCCCCCCC
Q 023176 3 KRVLCKFFAHGACLKGE-HCEFSHDWKD-------PPNNICTYYQKGFCSYGSRCRYEHVKPSR 58 (286)
Q Consensus 3 k~~~C~~f~~G~C~~G~-~C~f~H~~~~-------~~~~~C~~f~~G~C~~G~~C~y~H~~~~~ 58 (286)
+..+|++|++|.|++|+ .|+|+|+.+. .+.++|.+|++|.|.+| +|+|.|..+..
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCT-TCCSBCCCHHH
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCC-CcCccCChHHH
Confidence 45799999999999999 8999999753 46789999999999988 99999998654
No 12
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.30 E-value=3.5e-12 Score=104.06 Aligned_cols=49 Identities=35% Similarity=0.842 Sum_probs=40.3
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~ 261 (286)
++++|+||++ ++.+| +++ .|||+||..||..|+..+ .+||+||+.+...
T Consensus 52 ~~~~C~iC~~-~~~~~-------~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSE-YFIEA-------VTL-NCAHSFCSYCINEWMKRK-----------IECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCS-BCSSE-------EEE-TTSCEEEHHHHHHHTTTC-----------SBCTTTCCBCCCE
T ss_pred ccCCCcccCc-ccCCc-------eEC-CCCCCccHHHHHHHHHcC-----------CcCCCCCCcCCCC
Confidence 4678999999 56676 677 499999999999998653 4899999987643
No 13
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.1e-12 Score=95.59 Aligned_cols=50 Identities=24% Similarity=0.594 Sum_probs=40.9
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
+...+..|+||++. +.+| .++ .|||+||..||.+|.... ..||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~-~~~p-------~~~-~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~ 60 (81)
T 2csy_A 11 EEEIPFRCFICRQA-FQNP-------VVT-KCRHYFCESCALEHFRAT-----------PRCYICDQPTG 60 (81)
T ss_dssp CCCCCSBCSSSCSB-CCSE-------EEC-TTSCEEEHHHHHHHHHHC-----------SBCSSSCCBCC
T ss_pred cCCCCCCCcCCCch-hcCe-------eEc-cCCCHhHHHHHHHHHHCC-----------CcCCCcCcccc
Confidence 34557899999994 6666 566 599999999999999753 48999999975
No 14
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.28 E-value=2.5e-12 Score=99.28 Aligned_cols=51 Identities=29% Similarity=0.767 Sum_probs=41.4
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
..+++.|+||++ ++.+| +++..|||+||..||.+|+.... ..||+||..+.
T Consensus 19 l~~~~~C~IC~~-~~~~p-------~~~~~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 69 (100)
T 3lrq_A 19 IAEVFRCFICME-KLRDA-------RLCPHCSKLCCFSCIRRWLTEQR----------AQCPHCRAPLQ 69 (100)
T ss_dssp HHHHTBCTTTCS-BCSSE-------EECTTTCCEEEHHHHHHHHHHTC----------SBCTTTCCBCC
T ss_pred CCCCCCCccCCc-cccCc-------cccCCCCChhhHHHHHHHHHHCc----------CCCCCCCCcCC
Confidence 345788999999 56666 56247999999999999998752 48999999975
No 15
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.5e-12 Score=93.18 Aligned_cols=51 Identities=33% Similarity=0.615 Sum_probs=41.9
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
..++.+|+||++ ++.+| .++..|+|+||..||.+|.+.. ..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~-~~~~p-------~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 62 (72)
T 2djb_A 12 LTPYILCSICKG-YLIDA-------TTITECLHTFCKSCIVRHFYYS-----------NRCPKCNIVVHQ 62 (72)
T ss_dssp CCGGGSCTTTSS-CCSSC-------EECSSSCCEECHHHHHHHHHHC-----------SSCTTTCCCCCS
T ss_pred cCCCCCCCCCCh-HHHCc-------CEECCCCCHHHHHHHHHHHHcC-----------CcCCCcCcccCc
Confidence 355789999999 56666 5665799999999999999763 489999998764
No 16
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.27 E-value=4.4e-12 Score=101.42 Aligned_cols=70 Identities=17% Similarity=0.369 Sum_probs=52.0
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~ 271 (286)
.++.+|+||++ ++.+| +++ .|||+||..||..|+.... ..||+||..+... . .+..+
T Consensus 50 ~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~--~--~~~~n 106 (124)
T 3fl2_A 50 EETFQCICCQE-LVFRP-------ITT-VCQHNVCKDCLDRSFRAQV----------FSCPACRYDLGRS--Y--AMQVN 106 (124)
T ss_dssp HHHTBCTTTSS-BCSSE-------EEC-TTSCEEEHHHHHHHHHTTC----------CBCTTTCCBCCTT--C--CCCCC
T ss_pred ccCCCCCcCCh-HHcCc-------EEe-eCCCcccHHHHHHHHhHCc----------CCCCCCCccCCCC--C--CCCCC
Confidence 45688999999 57777 667 5999999999999997432 4999999987531 1 13445
Q ss_pred HHHHHHHHHHHhh
Q 023176 272 EEKQEIIDSYKSK 284 (286)
Q Consensus 272 ~~k~~li~~yk~~ 284 (286)
.....||+.|-..
T Consensus 107 ~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 107 QPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccc
Confidence 6677788877543
No 17
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.26 E-value=2.3e-12 Score=92.60 Aligned_cols=58 Identities=34% Similarity=0.742 Sum_probs=43.1
Q ss_pred HhccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 189 ~~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
...+++.+|+||++. +.+|...++...++ .|||.||..||.+|.+.+ .+||+||+.+.
T Consensus 5 ~~~~~~~~C~IC~~~-~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 62 (71)
T 3ng2_A 5 LRPSGTVSCPICMDG-YSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 62 (71)
T ss_dssp -CCTTCCBCTTTCCB-HHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCC
T ss_pred CCCCCCCCCcccChh-hhccccccCCeEeC-CCCChHhHHHHHHHHHcC-----------CCCCCCCCccC
Confidence 455678999999995 54432223333455 699999999999999764 48999999875
No 18
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.5e-12 Score=90.93 Aligned_cols=56 Identities=32% Similarity=0.717 Sum_probs=42.0
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
..++.+|+||++. +.++....+.+.++ .|||.||..||.+|.... .+||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~-~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDG-YSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCC-HHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHHC-----------SSCTTTCCCCC
T ss_pred CCCCCCCcccCcc-ccccccccCCeEeC-CCCChhcHHHHHHHHHcC-----------CCCCCCCCccC
Confidence 3567899999995 55442223444555 699999999999999763 48999999764
No 19
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.23 E-value=3.8e-12 Score=87.04 Aligned_cols=51 Identities=31% Similarity=0.811 Sum_probs=39.6
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
.++.+|+||++.+.+. ....+++.|+|.||..||.+|.+.+ .+||+||..+
T Consensus 3 ~~~~~C~IC~~~~~~~-----~~~~~~~~C~H~f~~~Ci~~w~~~~-----------~~CP~Cr~~~ 53 (55)
T 1iym_A 3 DDGVECAVCLAELEDG-----EEARFLPRCGHGFHAECVDMWLGSH-----------STCPLCRLTV 53 (55)
T ss_dssp CCSCCCTTTCCCCCTT-----SCCEECSSSCCEECTTHHHHTTTTC-----------CSCSSSCCCS
T ss_pred CCCCcCccCCccccCC-----CceEECCCCCCcccHHHHHHHHHcC-----------CcCcCCCCEe
Confidence 4678999999964332 1235676799999999999998653 4899999875
No 20
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.23 E-value=1e-11 Score=93.33 Aligned_cols=69 Identities=17% Similarity=0.132 Sum_probs=53.9
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~ 270 (286)
..++..|+||++ ++.+| ++++ |||+||..||..|+... .+||+||..+.. . . +..
T Consensus 11 ~p~~~~CpI~~~-~m~dP-------V~~~-cGhtf~r~~I~~~l~~~-----------~~cP~~~~~l~~---~-~-l~p 65 (85)
T 2kr4_A 11 APDEFRDPLMDT-LMTDP-------VRLP-SGTVMDRSIILRHLLNS-----------PTDPFNRQMLTE---S-M-LEP 65 (85)
T ss_dssp CCTTTBCTTTCS-BCSSE-------EECT-TSCEEEHHHHHHHHHHC-----------SBCTTTCCBCCG---G-G-CEE
T ss_pred CchheECcccCc-hhcCC-------eECC-CCCEECHHHHHHHHhcC-----------CCCCCCcCCCCh---H-h-cch
Confidence 356899999999 79998 7886 99999999999999753 489999998652 1 1 233
Q ss_pred cHHHHHHHHHHHhh
Q 023176 271 PEEKQEIIDSYKSK 284 (286)
Q Consensus 271 ~~~k~~li~~yk~~ 284 (286)
+..-..+|+.|++.
T Consensus 66 n~~L~~~i~~~~~~ 79 (85)
T 2kr4_A 66 VPELKEQIQAWMRE 79 (85)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45577788888753
No 21
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.23 E-value=1.1e-11 Score=95.78 Aligned_cols=33 Identities=24% Similarity=0.620 Sum_probs=30.1
Q ss_pred CCccCCCC-CCCcccccccCCCCCCCCCcccCCC
Q 023176 22 EFSHDWKD-PPNNICTYYQKGFCSYGSRCRYEHV 54 (286)
Q Consensus 22 ~f~H~~~~-~~~~~C~~f~~G~C~~G~~C~y~H~ 54 (286)
.|+|+... .++.+|+||++|.|.+|++|+|+|.
T Consensus 2 ~~sH~~~~~~k~~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 2 SSGSSGELPKKRELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp CCCCCCCCSCCCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred CccccCCCCCCCccCcccccCcCCCCCCCCCCCC
Confidence 37899775 6889999999999999999999998
No 22
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.22 E-value=4.1e-12 Score=89.26 Aligned_cols=54 Identities=31% Similarity=0.729 Sum_probs=41.4
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
++.+|+||++. +.++....+...++ .|||.||..||.+|.+.+ .+||+||+.+.
T Consensus 2 ~~~~C~IC~~~-~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDG-YSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCB-HHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCT
T ss_pred CCCCCCccChh-hhCccccCCCEEeC-CCCCchhHHHHHHHHHcC-----------CCCCCCCccCC
Confidence 57899999995 55442233444556 699999999999999763 48999999875
No 23
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=88.94 Aligned_cols=58 Identities=29% Similarity=0.663 Sum_probs=44.1
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccC
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~ 264 (286)
....+..|+||++.+.+. ....++ .|+|.||..||.+|.... .+||+||..+....|.
T Consensus 10 ~~~~~~~C~IC~~~~~~~-----~~~~~~-~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~ 67 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEG-----EDVRRL-PCMHLFHQVCVDQWLITN-----------KKCPICRVDIEAQLPS 67 (69)
T ss_dssp STTCCCSBTTTTBCCCSS-----SCEEEC-TTSCEEEHHHHHHHHHHC-----------SBCTTTCSBSCSCCCC
T ss_pred cCCCCCCCeeCCccccCC-----CcEEEe-CCCCHHHHHHHHHHHHcC-----------CCCcCcCccccCcCCC
Confidence 345678999999964332 123556 599999999999999864 3799999998876654
No 24
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.21 E-value=9.6e-12 Score=88.19 Aligned_cols=53 Identities=23% Similarity=0.505 Sum_probs=40.0
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
++.+|+||++.++.+| ...+.++ .|||+||..||.+|+.... ..||+||+.+.
T Consensus 2 ~~~~C~IC~~~~~~~~---~~~~~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 54 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNP---SLKLMVN-VCGHTLCESCVDLLFVRGA----------GNCPECGTPLR 54 (65)
T ss_dssp CTTCCSTTTTHHHHCS---SCCEEEC-TTCCCEEHHHHHHHHHTTS----------SSCTTTCCCCS
T ss_pred CCCcCCcCCCCccCCC---ccCeecC-CCCCHhHHHHHHHHHHcCC----------CcCCCCCCccc
Confidence 5788999999445555 2333445 6999999999999976432 48999999875
No 25
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=1e-11 Score=97.10 Aligned_cols=51 Identities=27% Similarity=0.755 Sum_probs=40.6
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
.++..|+||++ ++.+| .++ .|||.||..||..|...... ...||+||..+.
T Consensus 19 ~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 19 QKILECPICLE-LIKEP-------VST-KCDHIFCKFCMLKLLNQKKG--------PSQCPLCKNDIT 69 (112)
T ss_dssp HHHTSCSSSCC-CCSSC-------CBC-TTSCCCCSHHHHHHHHSSSS--------SCCCTTTSCCCC
T ss_pred cCCCCCcccCh-hhcCe-------EEC-CCCCHHHHHHHHHHHHhCCC--------CCCCcCCCCcCC
Confidence 34678999999 56666 566 59999999999999975421 258999999876
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1e-11 Score=88.37 Aligned_cols=51 Identities=33% Similarity=0.648 Sum_probs=40.5
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
...++.+|+||++ ++.+| .++ .|||+||..||.+|.... ...||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 11 TVEDKYKCEKCHL-VLCSP-------KQT-ECGHRFCESCMAALLSSS----------SPKCTACQESIV 61 (66)
T ss_dssp SCCCCEECTTTCC-EESSC-------CCC-SSSCCCCHHHHHHHHTTS----------SCCCTTTCCCCC
T ss_pred cCCcCCCCCCCCh-HhcCe-------eEC-CCCCHHHHHHHHHHHHhC----------cCCCCCCCcCCC
Confidence 3456789999999 56666 455 699999999999999632 258999999864
No 27
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=9.8e-12 Score=89.85 Aligned_cols=53 Identities=34% Similarity=0.898 Sum_probs=41.5
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
...++..|+||++ .+.+| .++ .|||.||..||.+|..... ....||+||+.+.
T Consensus 16 ~~~~~~~C~IC~~-~~~~~-------~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 16 KLQEEVICPICLD-ILQKP-------VTI-DCGHNFCLKCITQIGETSC--------GFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCCCBCTTTCS-BCSSE-------EEC-TTCCEEEHHHHHHHCSSSC--------SCCCCSSSCCCCC
T ss_pred hCccCCEeccCCc-ccCCe-------EEc-CCCChhhHHHHHHHHHcCC--------CCCCCCCCCCcCC
Confidence 3456789999999 56666 566 6999999999999996321 1359999999864
No 28
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=89.91 Aligned_cols=56 Identities=23% Similarity=0.677 Sum_probs=42.9
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~ 262 (286)
+...+.+|+||++. +..+ ....+++ |+|.||..||.+|...+ .+||+||+.+..+.
T Consensus 11 ~~~~~~~C~IC~~~-~~~~----~~~~~~~-C~H~f~~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 11 ELNLHELCAVCLED-FKPR----DELGICP-CKHAFHRKCLIKWLEVR-----------KVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCSCBCSSSCCB-CCSS----SCEEEET-TTEEEEHHHHHHHHHHC-----------SBCTTTCCBCSSCC
T ss_pred cCCCCCCCcCCCcc-cCCC----CcEEEcC-CCCEecHHHHHHHHHcC-----------CcCCCcCccccccc
Confidence 34567899999996 5443 2345665 99999999999999764 38999999876443
No 29
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=99.19 E-value=4.7e-12 Score=94.77 Aligned_cols=54 Identities=31% Similarity=0.653 Sum_probs=47.3
Q ss_pred CCccccccccccCCCCC-CCCCccCCCC-----CCCcccccccCCCCCCCCCcccCCCCCC
Q 023176 3 KRVLCKFFAHGACLKGE-HCEFSHDWKD-----PPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (286)
Q Consensus 3 k~~~C~~f~~G~C~~G~-~C~f~H~~~~-----~~~~~C~~f~~G~C~~G~~C~y~H~~~~ 57 (286)
+..+|++|++|.|.+|+ .|+|+|+... .+.++|.+|++|.|..+ .|+|.|..+.
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~~~~~~~vC~dflkG~C~r~-~C~y~H~~~~ 67 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRE-NCKYLHPPPH 67 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCTTCCEETTEEECCHHHHTTCCCCS-SCSSCCCCHH
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCccccccCCceeehhHhhhccccCC-CcceeCChHH
Confidence 45799999999999997 9999999753 45789999999999977 9999999764
No 30
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=6.6e-12 Score=90.66 Aligned_cols=50 Identities=28% Similarity=0.661 Sum_probs=40.8
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
...++.+|+||++. +.+| +++ .|+|.||..||.+|.... ..||+||..+.
T Consensus 11 ~~~~~~~C~IC~~~-~~~~-------~~~-~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~ 60 (71)
T 2d8t_A 11 PSLTVPECAICLQT-CVHP-------VSL-PCKHVFCYLCVKGASWLG-----------KRCALCRQEIP 60 (71)
T ss_dssp SSSSCCBCSSSSSB-CSSE-------EEE-TTTEEEEHHHHHHCTTCS-----------SBCSSSCCBCC
T ss_pred cCCCCCCCccCCcc-cCCC-------EEc-cCCCHHHHHHHHHHHHCC-----------CcCcCcCchhC
Confidence 34567899999995 6665 667 499999999999998643 48999999875
No 31
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.7e-11 Score=93.65 Aligned_cols=74 Identities=20% Similarity=0.315 Sum_probs=54.9
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccC--CCcc---ccccccCce
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI--CRKL---SYFVIPSVI 266 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~--CR~~---~~~~~p~~~ 266 (286)
.+++.|+||++ +|.+| ++++.|||+||..||.+|+..... .+...+||+ |+.. ...++|
T Consensus 5 ~~~~~CPI~~~-~~~dP-------V~~~~cGh~f~r~cI~~~l~~~~~-----~~~~~~CP~tgc~~~~l~~~~L~p--- 68 (94)
T 2yu4_A 5 SSGFTCPITKE-EMKKP-------VKNKVCGHTYEEDAIVRMIESRQK-----RKKKAYCPQIGCSHTDIRKSDLIQ--- 68 (94)
T ss_dssp SSCCBCTTTCS-BCSSE-------EEESSSCCEEEHHHHHHHHHHHHT-----TTCCBCCCSTTCCCCCBCGGGEEE---
T ss_pred CcEeECcCcCc-hhcCC-------EEcCCCCCeecHHHHHHHHHHccC-----cCCCCCCCcCcCcccccCHhhCcC---
Confidence 46799999999 78888 788669999999999999976310 011358999 9865 223333
Q ss_pred eeCCcHHHHHHHHHHHhhc
Q 023176 267 WYYTPEEKQEIIDSYKSKL 285 (286)
Q Consensus 267 ~~~~~~~k~~li~~yk~~~ 285 (286)
+...+.+|+.|++..
T Consensus 69 ----n~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 69 ----DEALRRAIENHNKKR 83 (94)
T ss_dssp ----CHHHHHHHHHHHTTC
T ss_pred ----CHHHHHHHHHHHHHh
Confidence 456788999998753
No 32
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.18 E-value=1.6e-11 Score=101.80 Aligned_cols=71 Identities=23% Similarity=0.420 Sum_probs=53.8
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~ 271 (286)
.+++.|+||++ ++.+| +++ .|||+||..||..|..... ..||+||..+..- . -+..+
T Consensus 76 ~~~~~C~IC~~-~~~~p-------v~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~---~-~l~~n 132 (150)
T 1z6u_A 76 EQSFMCVCCQE-LVYQP-------VTT-ECFHNVCKDCLQRSFKAQV----------FSCPACRHDLGQN---Y-IMIPN 132 (150)
T ss_dssp HHHTBCTTTSS-BCSSE-------EEC-TTSCEEEHHHHHHHHHTTC----------CBCTTTCCBCCTT---C-CCCBC
T ss_pred ccCCEeecCCh-hhcCC-------EEc-CCCCchhHHHHHHHHHhCC----------CcCCCCCccCCCC---C-CCCCC
Confidence 35689999999 57777 566 5999999999999997532 4899999987532 1 13345
Q ss_pred HHHHHHHHHHHhhc
Q 023176 272 EEKQEIIDSYKSKL 285 (286)
Q Consensus 272 ~~k~~li~~yk~~~ 285 (286)
...+.||+.|...+
T Consensus 133 ~~l~~lv~~~~p~~ 146 (150)
T 1z6u_A 133 EILQTLLDLFFPGY 146 (150)
T ss_dssp HHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHhhHh
Confidence 66788998887654
No 33
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.17 E-value=2.4e-11 Score=93.78 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=53.8
Q ss_pred ccCcccccccccccccCccccccceeecCCCC-CcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeC
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECD-HPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY 269 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~-H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~ 269 (286)
..++..|+||++ ++.+| ++++ || |+||..||..|+... .+||+||..+.. . . +.
T Consensus 19 ~p~~~~CpI~~~-~m~dP-------V~~~-cG~htf~r~cI~~~l~~~-----------~~cP~~~~~l~~---~-~-L~ 73 (98)
T 1wgm_A 19 ACDEFLDPIMST-LMCDP-------VVLP-SSRVTVDRSTIARHLLSD-----------QTDPFNRSPLTM---D-Q-IR 73 (98)
T ss_dssp CCTTTBCTTTCS-BCSSE-------EECT-TTCCEEEHHHHHHHTTTS-----------CBCTTTCSBCCT---T-T-SE
T ss_pred CcHhcCCcCccc-cccCC-------eECC-CCCeEECHHHHHHHHHhC-----------CCCCCCCCCCCh---h-h-ce
Confidence 356899999999 79998 7875 99 999999999999742 489999998752 1 1 22
Q ss_pred CcHHHHHHHHHHHhh
Q 023176 270 TPEEKQEIIDSYKSK 284 (286)
Q Consensus 270 ~~~~k~~li~~yk~~ 284 (286)
.+...+.+|+.|++.
T Consensus 74 pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 74 PNTELKEKIQRWLAE 88 (98)
T ss_dssp ECHHHHHHHHHHHHH
T ss_pred EcHHHHHHHHHHHHH
Confidence 355677888888764
No 34
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.17 E-value=1.7e-11 Score=83.64 Aligned_cols=51 Identities=24% Similarity=0.570 Sum_probs=39.6
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
+.+.+|+||++.+.+. +....++ .|+|.||..||.+|.... .+||+||..+
T Consensus 3 ~~~~~C~IC~~~~~~~----~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTS----RVVAHVL-PCGHLLHRTCYEEMLKEG-----------YRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTT----TSCEEEC-TTSCEEETTHHHHHHHHT-----------CCCTTSCCSS
T ss_pred CCCCcCcccChhhcCC----CcCeEec-CCCCcccHHHHHHHHHcC-----------CcCCCCCCcC
Confidence 4578899999965432 2233566 599999999999999865 3899999875
No 35
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.5e-11 Score=91.41 Aligned_cols=58 Identities=22% Similarity=0.579 Sum_probs=40.7
Q ss_pred cCcccccccccccccC------ccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 192 SQEIECSVCLDRVLSK------PTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~------~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
.++.+|+||++.+.+. +...+....+++.|+|.|+..||.+|...+ .+||+||+.+.+
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-----------NRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-----------CBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-----------CCCCCcCCCcch
Confidence 3577899999964331 000122234565799999999999999754 389999998753
No 36
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.16 E-value=2e-11 Score=94.54 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=54.1
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~ 270 (286)
..++..|+||++ ++.+| ++++ |||+||..||..|+... .+||+||..+.. . . +..
T Consensus 26 ~p~~~~CpI~~~-~m~dP-------V~~~-cGhtf~r~~I~~~l~~~-----------~~cP~~~~~l~~---~-~-L~p 80 (100)
T 2kre_A 26 APDEFRDPLMDT-LMTDP-------VRLP-SGTIMDRSIILRHLLNS-----------PTDPFNRQTLTE---S-M-LEP 80 (100)
T ss_dssp CSTTTBCTTTCS-BCSSE-------EEET-TTEEEEHHHHHHHTTSC-----------SBCSSSCCBCCT---T-S-SEE
T ss_pred CcHhhCCcCccC-cccCC-------eECC-CCCEEchHHHHHHHHcC-----------CCCCCCCCCCCh---h-h-ceE
Confidence 356899999999 79998 8886 99999999999999732 489999998652 1 1 223
Q ss_pred cHHHHHHHHHHHhh
Q 023176 271 PEEKQEIIDSYKSK 284 (286)
Q Consensus 271 ~~~k~~li~~yk~~ 284 (286)
+.....+|+.|++.
T Consensus 81 n~~Lk~~I~~~~~~ 94 (100)
T 2kre_A 81 VPELKEQIQAWMRE 94 (100)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHH
Confidence 45677888888764
No 37
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.1e-11 Score=85.75 Aligned_cols=48 Identities=38% Similarity=0.995 Sum_probs=38.1
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C 254 (286)
...++.+|+||++ ++.+| .++ .|||+||..||.+|+..... ...||+|
T Consensus 16 ~~~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~--------~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLD-ILQKP-------VTI-DCGHNFCLKCITQIGETSCG--------FFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCS-BCSSC-------EEC-TTSSEECHHHHHHHHHHCSS--------CCCCSCC
T ss_pred hCccCCCCCcCCc-hhCCe-------EEe-CCCCcchHHHHHHHHHcCCC--------CCcCcCC
Confidence 3456789999999 57777 677 69999999999999985321 3589998
No 38
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.16 E-value=1.7e-11 Score=87.44 Aligned_cols=54 Identities=30% Similarity=0.738 Sum_probs=42.0
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccC
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~ 264 (286)
..+.+|+||++. +.++. .++ .|||.||..||.+|...+ .+||+||+.+..++..
T Consensus 3 ~~~~~C~IC~~~-~~~~~------~~~-~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~ 56 (68)
T 1chc_A 3 TVAERCPICLED-PSNYS------MAL-PCLHAFCYVCITRWIRQN-----------PTCPLCKVPVESVVHT 56 (68)
T ss_dssp CCCCCCSSCCSC-CCSCE------EET-TTTEEESTTHHHHHHHHS-----------CSTTTTCCCCCCEECC
T ss_pred CCCCCCeeCCcc-ccCCc------Eec-CCCCeeHHHHHHHHHhCc-----------CcCcCCChhhHhhhhc
Confidence 457889999996 54431 455 599999999999999754 3899999998765543
No 39
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.15 E-value=9.5e-12 Score=91.20 Aligned_cols=57 Identities=28% Similarity=0.692 Sum_probs=43.1
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
...++.+|+||++ ++.+| .++ .|||+||..||.+|+..... .......||+||..+.
T Consensus 8 ~~~~~~~C~IC~~-~~~~p-------~~l-~CgH~fC~~Ci~~~~~~~~~----~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 8 NVQEEVTCPICLE-LLTEP-------LSL-DCGHSLCRACITVSNKEAVT----SMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCCEETTTTE-ECSSC-------CCC-SSSCCCCHHHHSCCCCCCSS----SCCCCCCCSSSCCCCC
T ss_pred hcccCCCCcCCCc-ccCCe-------eEC-CCCCHHHHHHHHHHHHhccc----CCCCCCcCCCCCCcCC
Confidence 3456899999999 57776 566 59999999999999975321 1122469999999975
No 40
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.14 E-value=1.4e-11 Score=90.58 Aligned_cols=64 Identities=28% Similarity=0.721 Sum_probs=26.0
Q ss_pred CCCccccccc-CCCCCCCCCcccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 023176 30 PPNNICTYYQ-KGFCSYGSRCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPE 108 (286)
Q Consensus 30 ~~~~~C~~f~-~G~C~~G~~C~y~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~pe~s~~~~p~~~~~~~~~~~~ 108 (286)
.++.+|++|+ +|.|.+|++|+|+|..........
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~--------------------------------------------- 44 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR--------------------------------------------- 44 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------------
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCCChhhccccc---------------------------------------------
Confidence 5689999997 899999999999999854321100
Q ss_pred CcCCCCCCccccCCCCCCCCCCccCCh-hhhcCCCCCCCCCcccCCCC
Q 023176 109 SVCNDSLENDEVDEPRNLKPADRSICS-FAAAGNCPRGEKCPHIHGDT 155 (286)
Q Consensus 109 ~~~~s~~~~~~~~~~~~~~~~~~~lC~-y~~~G~C~~Gd~C~y~Hg~~ 155 (286)
....+..+|+ |++.|.|++|++|+|+|+..
T Consensus 45 -----------------~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 45 -----------------HPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp ------------------------------------------------
T ss_pred -----------------cccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 0122357897 66899999999999999863
No 41
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3e-11 Score=90.26 Aligned_cols=57 Identities=26% Similarity=0.696 Sum_probs=42.3
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
...++.+|+||++. +.+. ++...++ .|||.||..||.+|...... ...||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~-~~~~---~~~~~~~-~CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 11 ALREVLECPICMES-FTEE---QLRPKLL-HCGHTICRQCLEKLLASSIN--------GVRCPFCSKITR 67 (88)
T ss_dssp CCCSCCBCTTTCCB-CCTT---SSCEEEC-SSSCEEEHHHHHHHHHHCSS--------CBCCTTTCCCBC
T ss_pred hccCCCCCccCCcc-cccc---CCCeEEC-CCCChhhHHHHHHHHHcCCC--------CcCCCCCCCccc
Confidence 34567899999995 5541 1222667 59999999999999986521 259999999864
No 42
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.14 E-value=2e-11 Score=89.51 Aligned_cols=52 Identities=33% Similarity=0.723 Sum_probs=40.2
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
...+.+|+||++. +..+ ....++ .|+|.||..||.+|...+ .+||+||..+.
T Consensus 12 ~~~~~~C~IC~~~-~~~~----~~~~~~-~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 63 (78)
T 2ect_A 12 VGSGLECPVCKED-YALG----ESVRQL-PCNHLFHDSCIVPWLEQH-----------DSCPVCRKSLT 63 (78)
T ss_dssp SSSSCCCTTTTSC-CCTT----SCEEEC-TTSCEEETTTTHHHHTTT-----------CSCTTTCCCCC
T ss_pred CCCCCCCeeCCcc-ccCC----CCEEEe-CCCCeecHHHHHHHHHcC-----------CcCcCcCCccC
Confidence 4567899999995 5433 233456 499999999999999643 48999999875
No 43
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.13 E-value=2.7e-11 Score=101.48 Aligned_cols=70 Identities=29% Similarity=0.523 Sum_probs=48.2
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~ 271 (286)
.++..|+||++ ++.+| +++..|||+||..||.+|+.... ..||+||..+.... .+..+
T Consensus 52 ~~~~~C~IC~~-~~~~p-------~~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~~----~l~~~ 109 (165)
T 2ckl_B 52 HSELMCPICLD-MLKNT-------MTTKECLHRFCADCIITALRSGN----------KECPTCRKKLVSKR----SLRPD 109 (165)
T ss_dssp HHHHBCTTTSS-BCSSE-------EEETTTCCEEEHHHHHHHHHTTC----------CBCTTTCCBCCSGG----GEEEC
T ss_pred CCCCCCcccCh-HhhCc-------CEeCCCCChhHHHHHHHHHHhCc----------CCCCCCCCcCCCcc----cCCcC
Confidence 34678999999 56666 56656999999999999997532 58999999864211 12223
Q ss_pred HHHHHHHHHHHh
Q 023176 272 EEKQEIIDSYKS 283 (286)
Q Consensus 272 ~~k~~li~~yk~ 283 (286)
..-+.||+.++.
T Consensus 110 ~~l~~~i~~~~~ 121 (165)
T 2ckl_B 110 PNFDALISKIYP 121 (165)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHc
Confidence 445556666543
No 44
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.13 E-value=2.7e-11 Score=88.30 Aligned_cols=27 Identities=22% Similarity=0.715 Sum_probs=24.7
Q ss_pred CCCCcccccccCCCCCCCCCcccCCCC
Q 023176 29 DPPNNICTYYQKGFCSYGSRCRYEHVK 55 (286)
Q Consensus 29 ~~~~~~C~~f~~G~C~~G~~C~y~H~~ 55 (286)
..+..+|+||++|.|.+|++|+|+|..
T Consensus 13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~ 39 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCKKGDQCEFLHEY 39 (72)
T ss_dssp CCCCSBCHHHHTTCCCCGGGSSSBCSC
T ss_pred CCcCeeCHHHhcCCCCCCCCCCCcccc
Confidence 356889999999999999999999986
No 45
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=6.8e-11 Score=87.26 Aligned_cols=27 Identities=22% Similarity=0.715 Sum_probs=24.7
Q ss_pred CCCCcccccccCCCCCCCCCcccCCCC
Q 023176 29 DPPNNICTYYQKGFCSYGSRCRYEHVK 55 (286)
Q Consensus 29 ~~~~~~C~~f~~G~C~~G~~C~y~H~~ 55 (286)
..+..+|+||++|.|.+|++|+|+|..
T Consensus 7 ~~k~~~C~~fl~G~C~~G~~C~fsH~~ 33 (77)
T 2d9n_A 7 GEKTVVCKHWLRGLCKKGDQCEFLHEY 33 (77)
T ss_dssp CCTTSBCHHHHTTCCSCTTSSSSBCSC
T ss_pred CCcceeCHhHccCcCCCCCCCCCcccc
Confidence 356789999999999999999999987
No 46
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=2.6e-11 Score=88.32 Aligned_cols=52 Identities=33% Similarity=0.821 Sum_probs=40.4
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
..++.+|+||++. ++.+ ....+++ |+|.||..||.+|...+ .+||+||..+.
T Consensus 20 ~~~~~~C~IC~~~-~~~~----~~~~~l~-C~H~fh~~Ci~~w~~~~-----------~~CP~Cr~~~~ 71 (75)
T 1x4j_A 20 QSEQTLCVVCMCD-FESR----QLLRVLP-CNHEFHAKCVDKWLKAN-----------RTCPICRADSG 71 (75)
T ss_dssp SSSCCEETTTTEE-CCBT----CEEEEET-TTEEEETTHHHHHHHHC-----------SSCTTTCCCCC
T ss_pred cCCCCCCeECCcc-cCCC----CeEEEEC-CCCHhHHHHHHHHHHcC-----------CcCcCcCCcCC
Confidence 3567899999996 4433 2445675 99999999999999764 38999998753
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.11 E-value=9.9e-12 Score=98.01 Aligned_cols=50 Identities=28% Similarity=0.802 Sum_probs=40.9
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
.++++|+||++ ++.+| +++ .|||+||..||.+|..... ..||+||+.+..
T Consensus 13 ~~~~~C~iC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICME-ILVEP-------VTL-PCNHTLCKPCFQSTVEKAS----------LCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCS-BCSSC-------EEC-TTSCEECHHHHCCCCCTTT----------SBCTTTCCBCHH
T ss_pred CCCCCCccCCc-ccCce-------eEc-CCCCHHhHHHHHHHHhHCc----------CCCCCCCcccCc
Confidence 44688999999 56777 677 5999999999999986432 589999999763
No 48
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.11 E-value=5e-11 Score=93.64 Aligned_cols=65 Identities=20% Similarity=0.527 Sum_probs=43.1
Q ss_pred hccCcccccccccccccCcc----------ccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 190 RRSQEIECSVCLDRVLSKPT----------AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~----------~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
....+..|+|||+. +..+. ......+.+..|+|.||..||.+|+..... ....+||+||..+.
T Consensus 21 ~~~~~~~C~ICl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~------~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 21 KVAPEEDCIICMEK-LAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK------DGSLQCPSCKTIYG 93 (114)
T ss_dssp SSCCSCEETTTTEE-TTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC------SSCCBCTTTCCBSS
T ss_pred cCCCCCcCccCChh-hcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC------CCCCcCCCCCCccC
Confidence 34556799999996 43331 011122334469999999999999964321 12369999999876
Q ss_pred cc
Q 023176 260 FV 261 (286)
Q Consensus 260 ~~ 261 (286)
..
T Consensus 94 ~~ 95 (114)
T 1v87_A 94 EK 95 (114)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 49
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.10 E-value=3.9e-11 Score=91.01 Aligned_cols=52 Identities=29% Similarity=0.660 Sum_probs=39.9
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
..++..|+|||+.+.+. ....+|+ |+|.||..||.+|...+ .+||+||..+.
T Consensus 37 ~~~~~~C~IC~~~~~~~-----~~~~~l~-C~H~Fh~~Ci~~wl~~~-----------~~CP~Cr~~~~ 88 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKG-----DVATELP-CHHYFHKPCVSIWLQKS-----------GTCPVCRCMFP 88 (91)
T ss_dssp SSSCSEETTTTEECCTT-----CEEEEET-TTEEEEHHHHHHHHTTT-----------CBCTTTCCBSS
T ss_pred cCCCCCCcccChhhcCC-----CcEEecC-CCChHHHHHHHHHHHcC-----------CcCcCcCccCC
Confidence 34678899999964432 2346675 99999999999999643 48999998753
No 50
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.10 E-value=6e-11 Score=87.68 Aligned_cols=55 Identities=31% Similarity=0.752 Sum_probs=42.5
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
..++..|+||++ .+.+| .++ .|+|.||..||..|+..... ......||+||..+.
T Consensus 16 ~~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLE-LLKEP-------VSA-DCNHSFCRACITLNYESNRN-----TDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCS-CCSSC-------EEC-TTSCCBCHHHHHHHHHHSBC-----TTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCCh-hhCcc-------eeC-CCCCHHHHHHHHHHHHhccC-----CCCCCCCCCCCCcCC
Confidence 356789999999 46666 566 59999999999999987421 112369999999876
No 51
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6e-11 Score=81.70 Aligned_cols=47 Identities=40% Similarity=0.986 Sum_probs=36.6
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C 254 (286)
..++..|+||++ .+.+| .++ .|+|+||..||.+|+.... ....||+|
T Consensus 12 ~~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~--------~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLE-YLKEP-------VII-ECGHNFCKACITRWWEDLE--------RDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCC-BCSSC-------CCC-SSCCCCCHHHHHHHTTSSC--------CSCCCSCC
T ss_pred cccCCCCccCCc-ccCcc-------EeC-CCCCccCHHHHHHHHHhcC--------CCCCCCCC
Confidence 456789999999 46666 566 5999999999999986421 13689998
No 52
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=3.9e-11 Score=95.07 Aligned_cols=66 Identities=23% Similarity=0.621 Sum_probs=50.0
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~ 271 (286)
.+++.|+||++ ++.+| +++..|||+||..||..|+. ..||+||..+.. + -+..+
T Consensus 20 ~~~~~C~IC~~-~~~~p-------v~~~~CgH~fC~~Ci~~~~~-------------~~CP~Cr~~~~~--~---~~~~n 73 (117)
T 1jm7_B 20 EKLLRCSRCTN-ILREP-------VCLGGCEHIFCSNCVSDCIG-------------TGCPVCYTPAWI--Q---DLKIN 73 (117)
T ss_dssp HHTTSCSSSCS-CCSSC-------BCCCSSSCCBCTTTGGGGTT-------------TBCSSSCCBCSC--S---SCCCC
T ss_pred hhCCCCCCCCh-HhhCc-------cEeCCCCCHHHHHHHHHHhc-------------CCCcCCCCcCcc--c---ccccc
Confidence 44789999999 67777 66646999999999999985 289999998742 1 12345
Q ss_pred HHHHHHHHHHHh
Q 023176 272 EEKQEIIDSYKS 283 (286)
Q Consensus 272 ~~k~~li~~yk~ 283 (286)
..-..||+.|++
T Consensus 74 ~~l~~l~~~~~~ 85 (117)
T 1jm7_B 74 RQLDSMIQLCSK 85 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566778887765
No 53
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.2e-11 Score=87.60 Aligned_cols=55 Identities=31% Similarity=0.805 Sum_probs=41.7
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
..++.+|+||++ ++.+| .++ .|||.||..||.+|...... ......||+||+.+.
T Consensus 16 ~~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 16 VKEEVTCPICLE-LLTQP-------LSL-DCGHSFCQACLTANHKKSML-----DKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCTTTCS-CCSSC-------BCC-SSSCCBCTTHHHHHHHHHHH-----TTSCCCCTTTCCSSC
T ss_pred ccCCCCCCCCCc-ccCCc-------eeC-CCCCHHHHHHHHHHHHHhhc-----CCCCCcCCCCCCccC
Confidence 456789999999 46666 566 59999999999999876210 011369999999876
No 54
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=99.06 E-value=2.4e-11 Score=92.02 Aligned_cols=53 Identities=30% Similarity=0.627 Sum_probs=47.0
Q ss_pred CccccccccccCCCCC-CCCCccCCCC-----CCCcccccccCCCCCCCCCcccCCCCCC
Q 023176 4 RVLCKFFAHGACLKGE-HCEFSHDWKD-----PPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (286)
Q Consensus 4 ~~~C~~f~~G~C~~G~-~C~f~H~~~~-----~~~~~C~~f~~G~C~~G~~C~y~H~~~~ 57 (286)
..+|++|++|.|.+|+ .|+|+|+.+. .+.++|.+|++|.|..+ .|+|.|..+.
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v~~~~~~vC~dflkG~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCCCSSSCCBTTBEEBCHHHHHTCCCCT-TCCSBCCCHH
T ss_pred hhhchHHhcCCCCCCCCCCCCcCCCccccccCCceeeehhhhhCcCCCC-CcceecCHHH
Confidence 5699999999999998 9999998763 35789999999999965 9999999764
No 55
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.05 E-value=6.4e-11 Score=93.94 Aligned_cols=51 Identities=25% Similarity=0.596 Sum_probs=41.7
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
...++..|+||++ ++.+| .++ .|||+||..||.+|..... ..||+||..+.
T Consensus 14 ~~~~~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 64 (118)
T 3hct_A 14 PLESKYECPICLM-ALREA-------VQT-PCGHRFCKACIIKSIRDAG----------HKCPVDNEILL 64 (118)
T ss_dssp CCCGGGBCTTTCS-BCSSE-------EEC-TTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCC
T ss_pred CCCCCCCCCcCCh-hhcCe-------EEC-CcCChhhHHHHHHHHhhCC----------CCCCCCCCCcC
Confidence 3456789999999 57666 566 5999999999999997643 38999999865
No 56
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.04 E-value=1.1e-10 Score=86.23 Aligned_cols=54 Identities=24% Similarity=0.559 Sum_probs=39.7
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
..++.+|+||+|.+..++ ..|..+ .|||.||..||..|+... ...||+||+.+.
T Consensus 8 ~~~~~~CpICle~~~~~d----~~~~p~-~CGH~fC~~Cl~~~~~~~----------~~~CP~CR~~~~ 61 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDD----INFFPC-TCGYQICRFCWHRIRTDE----------NGLCPACRKPYP 61 (78)
T ss_dssp CCCCCBCTTTCCBCCTTT----TTCCSS-TTSCCCCHHHHHHHTTSS----------CSBCTTTCCBCS
T ss_pred cccCCcCCccCccCcccc----cccccc-CCCCCcCHHHHHHHHhcC----------CCCCCCCCCccC
Confidence 456789999999543221 233334 499999999999987542 259999999886
No 57
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.04 E-value=7.7e-11 Score=94.15 Aligned_cols=55 Identities=33% Similarity=0.736 Sum_probs=41.6
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
+++++|+||++. +.+|..+++...++ .|||+||..||.+|++.+ .+||+||+.+.
T Consensus 5 ~~~~~C~IC~~~-~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDG-YSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCB-HHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTC-----------SBCTTTCCBCT
T ss_pred CCCCCCcccChh-hhCccccccCeEec-CCCChhhHHHHHHHHHhC-----------CCCCCCCCcCc
Confidence 567899999995 55442122333455 699999999999999754 48999999986
No 58
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.03 E-value=1.3e-10 Score=91.69 Aligned_cols=47 Identities=32% Similarity=0.750 Sum_probs=39.5
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
+..|+||++ ++.+| .++ .|||+||..||.+|..... ..||+||..+.
T Consensus 23 ~~~C~IC~~-~~~~p-------~~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 69 (116)
T 1rmd_A 23 SISCQICEH-ILADP-------VET-SCKHLFCRICILRCLKVMG----------SYCPSCRYPCF 69 (116)
T ss_dssp HTBCTTTCS-BCSSE-------EEC-TTSCEEEHHHHHHHHHHTC----------SBCTTTCCBCC
T ss_pred CCCCCCCCc-HhcCc-------EEc-CCCCcccHHHHHHHHhHCc----------CcCCCCCCCCC
Confidence 678999999 57776 566 6999999999999998642 48999999875
No 59
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.03 E-value=2.9e-11 Score=83.55 Aligned_cols=46 Identities=30% Similarity=0.648 Sum_probs=38.0
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
..++++|+||++ ++.+| .+|+ |||+||..||.+|. ..||+||+.+.
T Consensus 3 e~~~~~C~IC~~-~~~~p-------~~l~-CgH~fC~~Ci~~~~--------------~~CP~Cr~~~~ 48 (56)
T 1bor_A 3 EFQFLRCQQCQA-EAKCP-------KLLP-CLHTLCSGCLEASG--------------MQCPICQAPWP 48 (56)
T ss_dssp SCCCSSCSSSCS-SCBCC-------SCST-TSCCSBTTTCSSSS--------------SSCSSCCSSSS
T ss_pred cccCCCceEeCC-ccCCe-------EEcC-CCCcccHHHHccCC--------------CCCCcCCcEee
Confidence 456789999999 57777 6775 99999999998841 48999999875
No 60
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.99 E-value=2.7e-10 Score=102.01 Aligned_cols=69 Identities=12% Similarity=0.155 Sum_probs=53.9
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~ 271 (286)
..+..|+||++ ++.+| ++++ |||+||..||..|+.... .+||+||..+.. .. +..+
T Consensus 206 ~~~~~c~i~~~-~~~dP-------v~~~-~gh~f~~~~i~~~~~~~~----------~~cP~~~~~~~~---~~--l~~n 261 (281)
T 2c2l_A 206 PDYLCGKISFE-LMREP-------CITP-SGITYDRKDIEEHLQRVG----------HFNPVTRSPLTQ---EQ--LIPN 261 (281)
T ss_dssp CSTTBCTTTCS-BCSSE-------EECS-SCCEEETTHHHHHHHHTC----------SSCTTTCCCCCG---GG--CEEC
T ss_pred CcccCCcCcCC-HhcCC-------eECC-CCCEECHHHHHHHHHHCC----------CCCcCCCCCCch---hc--Cccc
Confidence 46899999999 78888 7886 999999999999997643 259999998751 11 2235
Q ss_pred HHHHHHHHHHHhh
Q 023176 272 EEKQEIIDSYKSK 284 (286)
Q Consensus 272 ~~k~~li~~yk~~ 284 (286)
..-..+|+.|.+.
T Consensus 262 ~~l~~~i~~~~~~ 274 (281)
T 2c2l_A 262 LAMKEVIDAFISE 274 (281)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 5678899998764
No 61
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=6.6e-11 Score=84.90 Aligned_cols=50 Identities=38% Similarity=0.907 Sum_probs=39.3
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
+..++..|+||++. +.+ .++ .|+|.||..||.+|.... ..||+||..+..
T Consensus 11 ~~~~~~~C~IC~~~-~~~--------~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDG-RAD--------LIL-PCAHSFCQKCIDKWSDRH-----------RNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCS-CCS--------EEE-TTTEEECHHHHHHSSCCC-----------SSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcC-ccC--------ccc-CCCCcccHHHHHHHHHCc-----------CcCCCcCCcccC
Confidence 34567899999995 332 566 499999999999998632 589999998763
No 62
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.98 E-value=1.4e-10 Score=95.11 Aligned_cols=50 Identities=30% Similarity=0.709 Sum_probs=41.0
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
...++.+|+||++ ++.+| +.+ .|||.||..||.+|+.... ..||+||...
T Consensus 27 ~l~~~~~C~IC~~-~~~~p-------v~~-~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRN-VLRRP-------FQA-QCGHRYCSFCLASILSSGP----------QNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCS-BCSSE-------EEC-TTSCEEEHHHHHHHGGGSC----------EECHHHHHTT
T ss_pred cCCcCcCCCCCCh-hhcCc-------EEC-CCCCccCHHHHHHHHhcCC----------CCCCCCCCcc
Confidence 4567899999999 67776 555 6999999999999997532 4899999975
No 63
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.97 E-value=3.6e-10 Score=88.41 Aligned_cols=56 Identities=23% Similarity=0.568 Sum_probs=40.1
Q ss_pred cCcccccccccccccCc-----------cccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 192 SQEIECSVCLDRVLSKP-----------TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~-----------~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
.++.+|+||++.+ +.+ ...+....++ .|+|.|+..||..|...+ .+||+||+.+.+
T Consensus 35 ~~~d~CaIC~~~~-~~~c~~C~~~~~~~~~~~~~~~~~-~C~H~FH~~Ci~~Wl~~~-----------~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 35 IVVDNCAICRNHI-MDLCIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKTR-----------QVCPLDNREWEF 101 (106)
T ss_dssp SCSCCCSSSCSCT-TSCCTTHHHHTTCC---CCCEEEE-TTSCEEEHHHHHHHHTTC-----------SBCSSSCSBCCE
T ss_pred CCCCCCccCChhH-hCcCchhhccccccCCccceEeec-ccCcEECHHHHHHHHHcC-----------CcCcCCCCccee
Confidence 3578899999964 433 1112233445 599999999999999753 489999998653
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.93 E-value=2.3e-09 Score=91.29 Aligned_cols=69 Identities=10% Similarity=0.138 Sum_probs=53.4
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCCc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~~ 271 (286)
.++..|+||++ ++.+| ++++ |||+||..||..|+.... .+||+||..+.. . . +..+
T Consensus 104 p~~f~CPI~~e-lm~DP-------V~~~-~Ghtfer~~I~~~l~~~~----------~tcP~t~~~l~~---~-~-L~pN 159 (179)
T 2f42_A 104 PDYLCGKISFE-LMREP-------CITP-SGITYDRKDIEEHLQRVG----------HFDPVTRSPLTQ---D-Q-LIPN 159 (179)
T ss_dssp CGGGBCTTTCS-BCSSE-------EECT-TSCEEEHHHHHHHHHHTC----------SBCTTTCCBCCG---G-G-CEEC
T ss_pred cHhhcccCccc-cCCCC-------eECC-CCCEECHHHHHHHHHhCC----------CCCCCCcCCCCh---h-h-Ccch
Confidence 56799999999 79998 7885 999999999999997642 279999998752 1 1 2234
Q ss_pred HHHHHHHHHHHhh
Q 023176 272 EEKQEIIDSYKSK 284 (286)
Q Consensus 272 ~~k~~li~~yk~~ 284 (286)
..-..+|+.|++.
T Consensus 160 ~~Lk~~Ie~~~~~ 172 (179)
T 2f42_A 160 LAMKEVIDAFIQE 172 (179)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5577788888754
No 65
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.91 E-value=6.2e-10 Score=80.58 Aligned_cols=59 Identities=29% Similarity=0.610 Sum_probs=46.5
Q ss_pred CCcccccccCCCCCCCC-CcccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 023176 31 PNNICTYYQKGFCSYGS-RCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPES 109 (286)
Q Consensus 31 ~~~~C~~f~~G~C~~G~-~C~y~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~pe~s~~~~p~~~~~~~~~~~~~ 109 (286)
+..+|++|++|.|.+|+ .|+|+|........
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~------------------------------------------------ 36 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADSTMID------------------------------------------------ 36 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCB------------------------------------------------
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCccccccc------------------------------------------------
Confidence 35799999999999999 59999987431100
Q ss_pred cCCCCCCccccCCCCCCCCCCccCChhhhcCCCCCCCCCcccCCC
Q 023176 110 VCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGD 154 (286)
Q Consensus 110 ~~~s~~~~~~~~~~~~~~~~~~~lC~y~~~G~C~~Gd~C~y~Hg~ 154 (286)
..+...++|.+|++|.|.+| +|+|+|+.
T Consensus 37 ----------------~~~~~~~vC~~flkG~C~r~-~C~y~H~~ 64 (70)
T 3d2q_A 37 ----------------TNDNTVTVCMDYIKGRCSRE-KCKYFHPP 64 (70)
T ss_dssp ----------------TTTTEEEBCHHHHTTCCCCT-TCCSBCCC
T ss_pred ----------------ccCCcceeccccCcCCCCCC-CcCeeCCH
Confidence 01234688999999999999 99999976
No 66
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.91 E-value=3.8e-10 Score=80.12 Aligned_cols=56 Identities=18% Similarity=0.479 Sum_probs=40.9
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p 263 (286)
.++++.+|.|||+. ..++ .|..++ |||. ||..|+.+|+... ..||+||+.+..+++
T Consensus 4 ~~~~~~~C~IC~~~-~~~~-----~~~~~p-CgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i~ 60 (64)
T 2vje_A 4 PLNAIEPCVICQGR-PKNG-----CIVHGK-TGHLMACFTCAKKLKKRN-----------KPCPVCRQPIQMIVL 60 (64)
T ss_dssp -CGGGSCCTTTSSS-CSCE-----EEEETT-EEEEEECHHHHHHHHHTT-----------CCCTTTCCCCCEEEE
T ss_pred CCCCcCCCCcCCCC-CCCE-----EEECCC-CCChhhHHHHHHHHHHcC-----------CcCCCcCcchhceEe
Confidence 45677899999995 3332 122225 9999 8999999999643 489999999876653
No 67
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.88 E-value=3.8e-10 Score=82.26 Aligned_cols=47 Identities=28% Similarity=0.669 Sum_probs=37.9
Q ss_pred cCcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~ 262 (286)
.++..|+||++. +.++ +++ .|||. ||..||..| ..||+||+.+..++
T Consensus 22 ~~~~~C~iC~~~-~~~~-------~~~-pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~ 69 (74)
T 4ic3_A 22 QEEKLCKICMDR-NIAI-------VFV-PCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQ 69 (74)
T ss_dssp HHHTBCTTTSSS-BCCE-------EEE-TTCCBCCCHHHHTTC---------------SBCTTTCCBCSEEE
T ss_pred ccCCCCCCCCCC-CCCE-------EEc-CCCChhHHHHhhhcC---------------ccCCCcCcCccCcE
Confidence 346789999995 5555 667 59999 999999998 18999999987554
No 68
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=5.7e-10 Score=86.02 Aligned_cols=60 Identities=27% Similarity=0.572 Sum_probs=47.8
Q ss_pred CCcccccccCCCCCCCC-CcccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 023176 31 PNNICTYYQKGFCSYGS-RCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPES 109 (286)
Q Consensus 31 ~~~~C~~f~~G~C~~G~-~C~y~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~pe~s~~~~p~~~~~~~~~~~~~ 109 (286)
+..+|++|++|.|..|+ .|+|+|........
T Consensus 19 k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~------------------------------------------------ 50 (98)
T 2e5s_A 19 KLEVCREFQRGNCARGETDCRFAHPADSTMID------------------------------------------------ 50 (98)
T ss_dssp EEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCC------------------------------------------------
T ss_pred hhhhhHHHhcCcCCCCCCCCCCcCCchhcccc------------------------------------------------
Confidence 46899999999999999 79999997432100
Q ss_pred cCCCCCCccccCCCCCCCCCCccCChhhhcCCCCCCCCCcccCCCC
Q 023176 110 VCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDT 155 (286)
Q Consensus 110 ~~~s~~~~~~~~~~~~~~~~~~~lC~y~~~G~C~~Gd~C~y~Hg~~ 155 (286)
......++|.+|++|.|.+| +|+|.|+..
T Consensus 51 ----------------~~~~~~~vC~~flkG~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 51 ----------------TSDNTVTVCMDYIKGRCMRE-KCKYFHPPA 79 (98)
T ss_dssp ----------------TTTCEEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred ----------------ccCCccccchhhccCCCCCC-CcCccCChH
Confidence 01234688999999999999 999999763
No 69
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.84 E-value=1.1e-09 Score=87.38 Aligned_cols=56 Identities=32% Similarity=0.717 Sum_probs=42.1
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
..++..|+||++. ++++....+...++ .|||.||..||.+|.+.. ++||+||..+.
T Consensus 69 ~~~~~~C~iC~~~-~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~ 124 (133)
T 4ap4_A 69 GSGTVSCPICMDG-YSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-----------NTCPTCRKKIN 124 (133)
T ss_dssp SSSSCBCTTTCCB-HHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHHC-----------SBCTTTCCBCC
T ss_pred CCCCCCCCCCCCc-cccccccCcceEeC-CCCChhhHHHHHHHHHcC-----------CCCCCCCCcCC
Confidence 3567899999995 55442223333455 699999999999999764 49999999865
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.82 E-value=2e-09 Score=96.27 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=52.9
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccC--CCccccccccCcee
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI--CRKLSYFVIPSVIW 267 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~--CR~~~~~~~p~~~~ 267 (286)
....++.|+||++ ++.+| +++..|||+||..||.+|+.... ...||+ ||+.+. ....
T Consensus 177 ~~~~el~CPIcl~-~f~DP-------Vts~~CGHsFcR~cI~~~~~~~~---------~~~CPvtGCr~~l~---~~dL- 235 (267)
T 3htk_C 177 GGKIELTCPITCK-PYEAP-------LISRKCNHVFDRDGIQNYLQGYT---------TRDCPQAACSQVVS---MRDF- 235 (267)
T ss_dssp SSBCCSBCTTTSS-BCSSE-------EEESSSCCEEEHHHHHHHSTTCS---------CEECSGGGCSCEEC---GGGE-
T ss_pred CCceeeECcCccC-cccCC-------eeeCCCCCcccHHHHHHHHHhCC---------CCCCCcccccCcCc---hhhC-
Confidence 3466899999999 68888 66547999999999999997532 258999 999754 2222
Q ss_pred eCCcHHHHHHHHHHHhh
Q 023176 268 YYTPEEKQEIIDSYKSK 284 (286)
Q Consensus 268 ~~~~~~k~~li~~yk~~ 284 (286)
+ .+..-..+|+.++.+
T Consensus 236 ~-pN~~L~~lve~~k~r 251 (267)
T 3htk_C 236 V-RDPIMELRCKIAKMK 251 (267)
T ss_dssp E-ECHHHHHHHHHHHHH
T ss_pred C-cCHHHHHHHHHHHHH
Confidence 2 234566677777654
No 71
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.82 E-value=2.7e-09 Score=100.72 Aligned_cols=53 Identities=26% Similarity=0.613 Sum_probs=41.6
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~ 261 (286)
..+.+.+|+||++. +.+| +++ .|||.||..||..|..... ..||+||..+...
T Consensus 328 ~~~~~~~C~ICle~-~~~p-------v~l-pCGH~FC~~Ci~~wl~~~~----------~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 328 MGSTFQLCKICAEN-DKDV-------KIE-PCGHLMCTSCLTSWQESEG----------QGCPFCRCEIKGT 380 (389)
T ss_dssp TTTSSSBCTTTSSS-BCCE-------EEE-TTCCEECHHHHHHHHHHTC----------SBCTTTCCBCCEE
T ss_pred hcCCCCCCCccCcC-CCCe-------EEe-CCCChhhHHHHHHHHhcCC----------CCCCCCCCccCCc
Confidence 44456899999995 5555 566 5999999999999997422 5899999988643
No 72
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.81 E-value=5.7e-10 Score=88.72 Aligned_cols=56 Identities=21% Similarity=0.564 Sum_probs=1.0
Q ss_pred CcccccccccccccCccc----------cccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 193 QEIECSVCLDRVLSKPTA----------AERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~----------~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
.+.+|+||++.+.+ +-. .+..-.++..|+|.|+..||..|...+ .+||+||..+.+
T Consensus 47 ~~d~CaICl~~~~~-~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~-----------~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMD-LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-----------QVCPLDNREWEF 112 (117)
T ss_dssp CC----------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcC-cChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC-----------CcCCCCCCeeee
Confidence 45789999996543 210 111113334699999999999999764 489999998653
No 73
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.80 E-value=1.5e-09 Score=76.78 Aligned_cols=54 Identities=28% Similarity=0.552 Sum_probs=39.7
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~ 262 (286)
.+.+..|.||||.. .++ .+.++| |||. ||..|+.+|+... ..||+||+.+..++
T Consensus 4 ~~~~~~C~IC~~~~-~~~-----~~~~~p-CgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i 58 (63)
T 2vje_B 4 QNLLKPCSLCEKRP-RDG-----NIIHGR-TGHLVTCFHCARRLKKAG-----------ASCPICKKEIQLVI 58 (63)
T ss_dssp GGGGSBCTTTSSSB-SCE-----EEEETT-EEEEEECHHHHHHHHHTT-----------CBCTTTCCBCCEEE
T ss_pred CCcCCCCcccCCcC-CCe-----EEEecC-CCCHhHHHHHHHHHHHhC-----------CcCCCcCchhhceE
Confidence 34567899999953 222 222235 9998 9999999998643 48999999987655
No 74
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79 E-value=1.2e-09 Score=82.98 Aligned_cols=57 Identities=23% Similarity=0.583 Sum_probs=39.1
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccC--CCcc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI--CRKL 257 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~--CR~~ 257 (286)
++..+|+||++. +..+ .+..|..|||.||.+||++++..+-..+ ......||. ||..
T Consensus 3 ~~~~~C~IC~~~-~~~~-----~~~~l~~CgH~FC~~Cl~~~~~~~i~~g---~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGE-YPVE-----QMTTIAQCQCIFCTLCLKQYVELLIKEG---LETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCC-CBGG-----GEEEETTTTEEEEHHHHHHHHHHHHHHC---SCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcc-cccc-----cceEcCCCCCcccHHHHHHHHHHHhhcC---CcccccCccccCCCC
Confidence 467899999995 4433 2233446999999999999887532111 011359999 9987
No 75
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.79 E-value=2.3e-09 Score=89.95 Aligned_cols=51 Identities=25% Similarity=0.596 Sum_probs=41.7
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
...+++.|+||++ ++.+| .++ .|||+||..||.+|+..+. ..||+||..+.
T Consensus 14 ~~~~~~~C~IC~~-~~~~p-------v~~-~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~ 64 (170)
T 3hcs_A 14 PLESKYECPICLM-ALREA-------VQT-PCGHRFCKACIIKSIRDAG----------HKCPVDNEILL 64 (170)
T ss_dssp CCCGGGBCTTTCS-BCSSE-------EEC-TTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCC
T ss_pred CCCCCCCCCCCCh-hhcCc-------EEC-CCCCHHHHHHHHHHHHhCC----------CCCCCCccCcc
Confidence 3456799999999 57776 566 5999999999999997643 38999999865
No 76
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.78 E-value=3.6e-09 Score=79.06 Aligned_cols=58 Identities=24% Similarity=0.549 Sum_probs=46.5
Q ss_pred CCcccccccCCCCCCCC-CcccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCC
Q 023176 31 PNNICTYYQKGFCSYGS-RCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPES 109 (286)
Q Consensus 31 ~~~~C~~f~~G~C~~G~-~C~y~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~pe~s~~~~p~~~~~~~~~~~~~ 109 (286)
+..+|++|++|.|..|+ .|+|+|.......
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~------------------------------------------------- 38 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSKSCQV------------------------------------------------- 38 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCTTCCE-------------------------------------------------
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCccccc-------------------------------------------------
Confidence 45799999999999997 9999999743110
Q ss_pred cCCCCCCccccCCCCCCCCCCccCChhhhcCCCCCCCCCcccCCCC
Q 023176 110 VCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDT 155 (286)
Q Consensus 110 ~~~s~~~~~~~~~~~~~~~~~~~lC~y~~~G~C~~Gd~C~y~Hg~~ 155 (286)
.....++|.+|++|.|.++ +|+|.|+..
T Consensus 39 -----------------~~~~~~vC~dflkG~C~r~-~C~y~H~~~ 66 (83)
T 3d2n_A 39 -----------------ENGRVIACFDSLKGRCSRE-NCKYLHPPP 66 (83)
T ss_dssp -----------------ETTEEECCHHHHTTCCCCS-SCSSCCCCH
T ss_pred -----------------cCCceeehhHhhhccccCC-CcceeCChH
Confidence 0123578999999999998 899999874
No 77
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.7e-09 Score=78.90 Aligned_cols=46 Identities=28% Similarity=0.682 Sum_probs=35.7
Q ss_pred CcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~ 262 (286)
++.+|+||++. +.++ +++ .|||. ||..||..+ ..||+||..+..++
T Consensus 24 ~~~~C~IC~~~-~~~~-------~~~-pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 24 EEKLCKICMDR-NIAI-------VFV-PCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQ 70 (75)
T ss_dssp HHHSCSSSCSS-CCCB-------CCS-SSCCCCBCHHHHHHC---------------SBCTTTCCBCCCCC
T ss_pred CCCCCCcCCCC-CCCE-------EEe-cCCCHHHHHHHhhCC---------------CCCccCCceecCcE
Confidence 35679999995 5555 566 59999 999999532 38999999987544
No 78
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.74 E-value=6e-09 Score=78.75 Aligned_cols=70 Identities=23% Similarity=0.455 Sum_probs=52.9
Q ss_pred CCCCCCccCCCCCCCcccccccCCCCCCCC-CcccCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCC
Q 023176 18 GEHCEFSHDWKDPPNNICTYYQKGFCSYGS-RCRYEHVKPSRSESAASSSSSVSHPSRATSSGITKVPGVMPELSALSRP 96 (286)
Q Consensus 18 G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~-~C~y~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~pe~s~~~~p 96 (286)
|..+.+.++.. .+..+|++|++|.|..|+ .|+|+|.......
T Consensus 4 ~~~~~~~~~~~-~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v------------------------------------ 46 (89)
T 2rpp_A 4 GSSGPVRDTKW-LTLEVCRQFQRGTCSRSDEECKFAHPPKSCQV------------------------------------ 46 (89)
T ss_dssp CCCSCCCSCSS-SEECBCHHHHHTCCCCCTTTSSSBCCCSSSCC------------------------------------
T ss_pred cccccccCCCc-chhhhchHHhcCCCCCCCCCCCCcCCCccccc------------------------------------
Confidence 55666666532 246799999999999998 9999999743110
Q ss_pred CCCCCCCCCCCCCcCCCCCCccccCCCCCCCCCCccCChhhhcCCCCCCCCCcccCCCC
Q 023176 97 FLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDT 155 (286)
Q Consensus 97 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~lC~y~~~G~C~~Gd~C~y~Hg~~ 155 (286)
.....++|.+|++|.|.++ .|+|.|+..
T Consensus 47 ------------------------------~~~~~~vC~dflkG~C~r~-~Cky~H~~~ 74 (89)
T 2rpp_A 47 ------------------------------ENGRVIACFDSLKGRCSRE-NCKYLHPPT 74 (89)
T ss_dssp ------------------------------BTTBEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred ------------------------------cCCceeeehhhhhCcCCCC-CcceecCHH
Confidence 0123577999999999997 899999864
No 79
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.69 E-value=2.7e-09 Score=78.85 Aligned_cols=46 Identities=28% Similarity=0.717 Sum_probs=36.7
Q ss_pred CcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~ 262 (286)
++..|.||++. ..++ ++++ |||. ||..|+..|+ .||+||..+..++
T Consensus 17 ~~~~C~IC~~~-~~~~-------v~~p-CgH~~~C~~C~~~~~---------------~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 17 EAMLCMVCCEE-EINS-------TFCP-CGHTVCCESCAAQLQ---------------SCPVCRSRVEHVQ 63 (79)
T ss_dssp HHTBCTTTSSS-BCCE-------EEET-TCBCCBCHHHHTTCS---------------BCTTTCCBCCEEE
T ss_pred CCCEeEEeCcc-cCcE-------EEEC-CCCHHHHHHHHHhcC---------------cCCCCCchhhCeE
Confidence 35689999995 4444 6674 9999 9999998763 7999999988554
No 80
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.68 E-value=1e-08 Score=76.02 Aligned_cols=55 Identities=22% Similarity=0.484 Sum_probs=40.6
Q ss_pred hccCcccccccccccccCccccccceeecCCCC-----CcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECD-----HPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~-----H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (286)
..+++..|.||++. ++.. .. .++| |+ |.|+..||.+|...+. ..+||+||..+.+
T Consensus 11 ~~~~~~~C~IC~~~-~~~~----~~-l~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~---------~~~CplCr~~~~~ 70 (80)
T 2d8s_A 11 TPSSQDICRICHCE-GDDE----SP-LITP-CHCTGSLHFVHQACLQQWIKSSD---------TRCCELCKYEFIM 70 (80)
T ss_dssp CCTTSCCCSSSCCC-CCSS----SC-EECS-SSCCSSSCCEETTHHHHHHHHHC---------CSBCSSSCCBCCC
T ss_pred CCCCCCCCeEcCcc-ccCC----Ce-eEec-cccCCcCCeeCHHHHHHHHhhCC---------CCCCCCCCCeeec
Confidence 34567899999985 4321 12 3565 86 9999999999998753 2599999998753
No 81
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=2.9e-08 Score=71.24 Aligned_cols=49 Identities=27% Similarity=0.731 Sum_probs=37.3
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~ 262 (286)
.+.++..|.|||+. ..++ +++ .|+|. ||..|+... ..||+||..+..++
T Consensus 11 ~~~~~~~C~IC~~~-~~~~-------v~~-pCgH~~~C~~C~~~~---------------~~CP~CR~~i~~~~ 60 (68)
T 2ea5_A 11 SEENSKDCVVCQNG-TVNW-------VLL-PCRHTCLCDGCVKYF---------------QQCPMCRQFVQESF 60 (68)
T ss_dssp SCCCSSCCSSSSSS-CCCC-------EET-TTTBCCSCTTHHHHC---------------SSCTTTCCCCCCEE
T ss_pred cCCCCCCCCCcCcC-CCCE-------EEE-CCCChhhhHHHHhcC---------------CCCCCCCcchhceE
Confidence 34567899999995 3333 566 59999 999999831 48999999987554
No 82
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.54 E-value=7.8e-08 Score=70.21 Aligned_cols=54 Identities=19% Similarity=0.483 Sum_probs=41.0
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccC
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~ 264 (286)
..+|.||.+.|+.. ..-+.|+|.|...||.+|+++++. .+||+||....+-+|.
T Consensus 15 i~~C~IC~~~i~~g--------~~C~~C~h~fH~~Ci~kWl~~~~~---------~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 15 VKICNICHSLLIQG--------QSCETCGIRMHLPCVAKYFQSNAE---------PRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SCBCSSSCCBCSSS--------EECSSSCCEECHHHHHHHSTTCSS---------CCCTTTCSCCCSCCCC
T ss_pred CCcCcchhhHcccC--------CccCCCCchhhHHHHHHHHHhcCC---------CCCCCCcCcCCCCCCC
Confidence 47899999966532 122269999999999999976532 4899999988766554
No 83
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=98.41 E-value=2.9e-07 Score=80.14 Aligned_cols=49 Identities=35% Similarity=0.733 Sum_probs=37.3
Q ss_pred ccccccccccCC----CCCCCCCccCCCC-------------------------CC-----CcccccccCC-----CCCC
Q 023176 5 VLCKFFAHGACL----KGEHCEFSHDWKD-------------------------PP-----NNICTYYQKG-----FCSY 45 (286)
Q Consensus 5 ~~C~~f~~G~C~----~G~~C~f~H~~~~-------------------------~~-----~~~C~~f~~G-----~C~~ 45 (286)
.+||||+-|.|+ .+..|+|+|++.+ ++ ..+|.+| +| .|.+
T Consensus 90 HLCK~~l~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C~~ 168 (229)
T 3u9g_A 90 HLCKLNLLGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTCGQ 168 (229)
T ss_dssp CCCHHHHTTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSCSS
T ss_pred eechhhhcCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcCCC
Confidence 589999999993 4578999999864 11 4689999 75 7887
Q ss_pred CCCcccCCC
Q 023176 46 GSRCRYEHV 54 (286)
Q Consensus 46 G~~C~y~H~ 54 (286)
++.|...|.
T Consensus 169 ~~~C~kLHI 177 (229)
T 3u9g_A 169 PQPCERLHI 177 (229)
T ss_dssp SSCCCSBCS
T ss_pred CCCCcceec
Confidence 777776665
No 84
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.34 E-value=7.9e-08 Score=89.74 Aligned_cols=47 Identities=32% Similarity=0.778 Sum_probs=38.4
Q ss_pred cCcccccccccccccCccccccceeecCCCCCc-CcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~-fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~ 262 (286)
.++..|+||++. +.+| +++ .|||. ||..||..| ..||+||..+..++
T Consensus 293 ~~~~~C~IC~~~-~~~~-------v~l-pCgH~~fC~~C~~~~---------------~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 293 QEERTCKVCMDK-EVSV-------VFI-PCGHLVVCQECAPSL---------------RKCPICRGIIKGTV 340 (345)
T ss_dssp HTTCBCTTTSSS-BCCE-------EEE-TTCCEEECTTTGGGC---------------SBCTTTCCBCCEEE
T ss_pred cCCCCCCccCCc-CCce-------EEc-CCCChhHhHHHHhcC---------------CcCCCCCCCccCeE
Confidence 457899999995 5555 677 49999 999999988 17999999987554
No 85
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.33 E-value=2.7e-07 Score=70.52 Aligned_cols=47 Identities=23% Similarity=0.604 Sum_probs=35.8
Q ss_pred ccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (286)
Q Consensus 197 C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~ 261 (286)
|.+|-=.|.. ||.+..|.|+||++|+..|.+.++ ++||+||..+..|
T Consensus 4 C~~C~~Pi~i--------ygRmIPCkHvFCydCa~~~~~~~~----------k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 4 CDKCGLPIKV--------YGRMIPCKHVFCYDCAILHEKKGD----------KMCPGCSDPVQRI 50 (101)
T ss_dssp CTTTCSBCSE--------EEEEETTCCEEEHHHHHHHHHTTC----------CBCTTTCCBCSEE
T ss_pred cCccCCCeEE--------EeeeccccccHHHHHHHHHHhccC----------CCCcCcCCeeeee
Confidence 6667654433 344446999999999999997654 5999999998754
No 86
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.25 E-value=4.4e-07 Score=63.67 Aligned_cols=52 Identities=15% Similarity=0.212 Sum_probs=41.8
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc--ccccC
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPS 264 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~--~~~p~ 264 (286)
...|+|+++ ++++| ++++.+||+|+..||.+|.... .+||+.++... -++|.
T Consensus 3 ~~~CpIs~~-~m~dP-------V~~~~sG~~yer~~I~~~l~~~-----------~~cP~t~~~L~~~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGK-VPRRP-------VLSPKSRTIFEKSLLEQYVKDT-----------GNDPITNEPLSIEEIVEI 56 (61)
T ss_dssp -CCCTTTCS-CCSSE-------EEETTTTEEEEHHHHHHHHHHH-----------SBCTTTCCBCCGGGCEEC
T ss_pred eEEecCCCC-CCCCC-------EEeCCCCcEEcHHHHHHHHHhC-----------CCCcCCcCCCChhhcEEC
Confidence 467999999 78888 7774699999999999999753 26999999874 44444
No 87
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.07 E-value=3.1e-06 Score=59.10 Aligned_cols=52 Identities=23% Similarity=0.525 Sum_probs=38.0
Q ss_pred ccCcccccccccccccCccccccceeecC-CCCC---cCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLS-ECDH---PFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~-~C~H---~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
.+++..|.||++. .+.+ .++| +|.| .|..+||.+|...+.. .+||+||..+.
T Consensus 3 ~~~~~~CrIC~~~-~~~~-------l~~PC~C~gs~~~~H~~Cl~~W~~~~~~---------~~C~~C~~~~~ 58 (60)
T 1vyx_A 3 DEDVPVCWICNEE-LGNE-------RFRACGCTGELENVHRSCLSTWLTISRN---------TACQICGVVYN 58 (60)
T ss_dssp TCSCCEETTTTEE-CSCC-------CCCSCCCSSGGGSCCHHHHHHHHHHHTC---------SBCTTTCCBCC
T ss_pred CCCCCEeEEeecC-CCCc-------eecCcCCCCchhhhHHHHHHHHHHhCCC---------CccCCCCCeee
Confidence 4567899999995 2222 2555 2444 8999999999986432 59999999875
No 88
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.96 E-value=2.1e-06 Score=79.46 Aligned_cols=66 Identities=15% Similarity=0.394 Sum_probs=41.0
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
...+|+||++.+.+...--+..- -.+.|+|.|...||.+|..+.......-..+...||.||....
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C-~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSC-DNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCC-SCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccc-cCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 34689999997655221000111 1236999999999999997532111112334579999999754
No 89
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=0.00019 Score=51.12 Aligned_cols=26 Identities=38% Similarity=0.838 Sum_probs=23.2
Q ss_pred CccCChhhhcCCCCCCCCCcccCCCC
Q 023176 130 DRSICSFAAAGNCPRGEKCPHIHGDT 155 (286)
Q Consensus 130 ~~~lC~y~~~G~C~~Gd~C~y~Hg~~ 155 (286)
+..||..|.+|.|+||++|+|+||..
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~~ 44 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGNA 44 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSHH
T ss_pred CcccCcccCcCCCCCCCccCCcCCHH
Confidence 34899888999999999999999984
No 90
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.00013 Score=52.02 Aligned_cols=35 Identities=23% Similarity=0.529 Sum_probs=21.6
Q ss_pred CCCccCCCCCCCcccccccCCCCCCCCCcccCCCCCC
Q 023176 21 CEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (286)
Q Consensus 21 C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~~~ 57 (286)
-.|...... ..+|+.|++|.|.||++|.|+|....
T Consensus 11 W~~R~P~~k--~~LC~~~~~G~C~~G~~C~FAHG~~E 45 (69)
T 2d9m_A 11 WQHRFPTGY--FSICDRYMNGTCPEGNSCKFAHGNAE 45 (69)
T ss_dssp CCCCCCCSC--CSBCHHHHHSCCSSCSSCSSBSSHHH
T ss_pred ccccCCCCC--cccCcccCcCCCCCCCccCCcCCHHH
Confidence 334444443 46777777777777777777776644
No 91
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=96.90 E-value=0.00043 Score=60.20 Aligned_cols=44 Identities=32% Similarity=0.699 Sum_probs=39.1
Q ss_pred Ccccccccc-----ccCCCCCCCCCccCCCCCCCcccccccCCCCCCCCCcccCCCCCC
Q 023176 4 RVLCKFFAH-----GACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPS 57 (286)
Q Consensus 4 ~~~C~~f~~-----G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~~~ 57 (286)
..+|.+| + |.|++++.|...| +|++|++|.|.| .+|+-+|...+
T Consensus 151 PeiC~~Y-kG~g~~g~C~~~~~C~kLH--------IC~~Fl~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 151 PEICKSY-KGEGRKQTCGQPQPCERLH--------ICEHFTRGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp CCBCTTC-CCSSSCCSCSSSSCCCSBC--------SCHHHHTTCCCC-SSCSSCCCTTS
T ss_pred chHHHHh-CCCCCCCcCCCCCCCccee--------ccchhhcCCcCC-CCccCccCccC
Confidence 4689999 6 4899999999998 699999999999 89999999744
No 92
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=95.78 E-value=0.00023 Score=52.39 Aligned_cols=42 Identities=26% Similarity=0.644 Sum_probs=33.1
Q ss_pred CccccccccccCCCCCCCCCccCCCCCCCcccccccCCCCCCCCCcccCCC
Q 023176 4 RVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHV 54 (286)
Q Consensus 4 ~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~ 54 (286)
...|+||.+ |++ ++|+|.|... ...|+|+. .|.+ ..|.|.|.
T Consensus 9 ~e~CKf~~~--Ctn-~~C~f~Hp~~---~~~Cr~g~--~C~~-~~C~f~HP 50 (80)
T 2lhn_A 9 LEQCKFGTH--CTN-KRCKYRHARS---HIMCREGA--NCTR-IDCLFGHP 50 (80)
Confidence 468999996 998 9999999643 35788874 7874 77999994
No 93
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.58 E-value=0.0041 Score=54.83 Aligned_cols=57 Identities=19% Similarity=0.466 Sum_probs=43.0
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCce
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVI 266 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~ 266 (286)
.-..|.||.+.|... ..=++|+|.|...|+.+|+++.. ...||.|+.....-+|..+
T Consensus 179 ~i~~C~iC~~iv~~g--------~~C~~C~~~~H~~C~~~~~~~~~---------~~~CP~C~~~W~~~~~~~~ 235 (238)
T 3nw0_A 179 AVKICNICHSLLIQG--------QSCETCGIRMHLPCVAKYFQSNA---------EPRCPHCNDYWPHEIPKVF 235 (238)
T ss_dssp TCCBCTTTCSBCSSC--------EECSSSCCEECHHHHHHHTTTCS---------SCBCTTTCCBCCSCCCCCC
T ss_pred CCCcCcchhhHHhCC--------cccCccChHHHHHHHHHHHHhCC---------CCCCCCCCCCCCCCCCCCC
Confidence 467899999966531 22335999999999999987643 2599999998877776644
No 94
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.37 E-value=0.001 Score=50.33 Aligned_cols=34 Identities=15% Similarity=0.569 Sum_probs=26.7
Q ss_pred CcccccccccccccCccccccceee--cCCCCCcCcHHHHHH-HH
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGL--LSECDHPFCISCIRN-WR 234 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~--l~~C~H~fC~~Ci~~-w~ 234 (286)
+++.|+||++.++.++ +. + .|+|.||..||+. |.
T Consensus 2 ee~~C~~C~~~~~~~a-------v~~C~-~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDA-------VKTCV-TCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBC-------CEEET-TTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCc-------eEECC-cCChHHhHHHCHHHhc
Confidence 5789999998545554 33 5 6999999999998 54
No 95
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.35 E-value=0.0053 Score=40.57 Aligned_cols=31 Identities=45% Similarity=0.964 Sum_probs=26.2
Q ss_pred CCCccCC-hhhhcCCCCCCCCCcccCCCCCCC
Q 023176 128 PADRSIC-SFAAAGNCPRGEKCPHIHGDTCPT 158 (286)
Q Consensus 128 ~~~~~lC-~y~~~G~C~~Gd~C~y~Hg~~c~~ 158 (286)
.....+| +|.+.|+|++|.+|++.|-...+.
T Consensus 17 ~~~~~iC~~FSayGwCp~G~~Cp~SHDiDl~~ 48 (50)
T 2fc6_A 17 PHPTSICDNFSAYGWCPLGPQCPQSHDISGPS 48 (50)
T ss_dssp CCCSCBCSHHHHTCCCTTGGGCSSBCCCCCCC
T ss_pred ccccchhhhccccccCCCCCCCCccccCCCCC
Confidence 3457889 799999999999999999876653
No 96
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=95.87 E-value=0.0024 Score=42.19 Aligned_cols=24 Identities=29% Similarity=0.825 Sum_probs=12.3
Q ss_pred Cccccccc-CCCCCCCCCcccCCCC
Q 023176 32 NNICTYYQ-KGFCSYGSRCRYEHVK 55 (286)
Q Consensus 32 ~~~C~~f~-~G~C~~G~~C~y~H~~ 55 (286)
+.+|.-|. -|+|++|.+|.++|..
T Consensus 20 ~~iC~~FSayGwCp~G~~Cp~SHDi 44 (50)
T 2fc6_A 20 TSICDNFSAYGWCPLGPQCPQSHDI 44 (50)
T ss_dssp SCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred cchhhhccccccCCCCCCCCccccC
Confidence 34555444 3555555555555544
No 97
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=95.02 E-value=0.0077 Score=53.16 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.5
Q ss_pred ccCChhhhcCCCCCCCCCcccCCCC
Q 023176 131 RSICSFAAAGNCPRGEKCPHIHGDT 155 (286)
Q Consensus 131 ~~lC~y~~~G~C~~Gd~C~y~Hg~~ 155 (286)
..+|.||++|.|.+|++|+|.|...
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHIP 94 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSCC
T ss_pred CeEcCccccCCCCCCCCCCccCCCC
Confidence 4689999999999999999999753
No 98
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=94.40 E-value=0.0087 Score=52.82 Aligned_cols=27 Identities=33% Similarity=0.926 Sum_probs=24.4
Q ss_pred CcccccccCCCCCCCCCcccCCCCCCC
Q 023176 32 NNICTYYQKGFCSYGSRCRYEHVKPSR 58 (286)
Q Consensus 32 ~~~C~~f~~G~C~~G~~C~y~H~~~~~ 58 (286)
..+|.||.+|.|.+|+.|.|.|..|..
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~lPt~ 96 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHIPDE 96 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSCCCH
T ss_pred CeEcCccccCCCCCCCCCCccCCCCCc
Confidence 469999999999999999999998764
No 99
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=88.54 E-value=0.079 Score=38.73 Aligned_cols=41 Identities=27% Similarity=0.638 Sum_probs=29.7
Q ss_pred ccccccccccCCCCCCCCCccCCCCCCCcccccccCCCCCCCCCcccCCCC
Q 023176 5 VLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVK 55 (286)
Q Consensus 5 ~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~ 55 (286)
+.|+|+.. |++ .+|.|.|.. ...|+|+. .|.+ ..|.|.|..
T Consensus 32 ~~Cr~g~~--C~~-~~C~f~HP~----~~~Crf~~--~C~n-~~C~F~Hp~ 72 (80)
T 2lhn_A 32 IMCREGAN--CTR-IDCLFGHPI----NEDCRFGV--NCKN-IYCLFRHPP 72 (80)
Confidence 36777653 776 679999962 35688865 5774 789999965
No 100
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=88.19 E-value=0.8 Score=33.92 Aligned_cols=59 Identities=22% Similarity=0.452 Sum_probs=45.9
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~ 261 (286)
......|.||=|.|=-.. ....|+--..|+-..|..|..-=|+... ..||+|++++...
T Consensus 13 ~~~~qiCqiCGD~VG~~~--~Ge~FVAC~eC~FPvCrpCyEYErkeG~----------q~CpqCktrYkr~ 71 (93)
T 1weo_A 13 NLDGQFCEICGDQIGLTV--EGDLFVACNECGFPACRPCYEYERREGT----------QNCPQCKTRYKRL 71 (93)
T ss_dssp CCSSCBCSSSCCBCCBCS--SSSBCCSCSSSCCCCCHHHHHHHHHTSC----------SSCTTTCCCCCCC
T ss_pred ccCCCccccccCccccCC--CCCEEEeeeccCChhhHHHHHHHHhccC----------ccccccCCccccc
Confidence 345578999999876554 3557888889999999999987666543 4999999998754
No 101
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=83.69 E-value=0.34 Score=36.31 Aligned_cols=45 Identities=31% Similarity=0.620 Sum_probs=35.0
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
-..|-.|+-. +| +++...+|-+|+.||....+..+ .||+|.....
T Consensus 28 ~~nCKsCWf~--~k--------~LV~C~dHYLCl~CLtlmL~~Sd-----------rCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFE--NK--------GLVECNNHYLCLNCLTLLLSVSN-----------RCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSC--CS--------SEEECSSCEEEHHHHHHTCSSSS-----------EETTTTEECC
T ss_pred cccChhhccc--cC--------CeeeecchhhHHHHHHHHHhhcc-----------CCcccCCcCC
Confidence 3568889873 22 67777899999999999886653 8999998764
No 102
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=76.85 E-value=6.8 Score=40.81 Aligned_cols=67 Identities=21% Similarity=0.196 Sum_probs=52.1
Q ss_pred hccCcccccccccccccCccccccceeecCCCC-CcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc--ccccCce
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECD-HPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPSVI 266 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~-H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~--~~~p~~~ 266 (286)
+..++..|+|=++ |+.+| ++++ -| ++|=...|.+|.... .+||.=|++.. .++|+
T Consensus 887 ~iP~~F~cPIs~~-lM~DP-------Vilp-sG~~TydR~~I~~wl~~~-----------~tdP~Tr~~L~~~~liPN-- 944 (968)
T 3m62_A 887 DVPDEFLDPLMYT-IMKDP-------VILP-ASKMNIDRSTIKAHLLSD-----------STDPFNRMPLKLEDVTPN-- 944 (968)
T ss_dssp CSCGGGBCTTTCS-BCSSE-------EECT-TTCCEEEHHHHHHHHTTC-----------CBCTTTCCBCCGGGCEEC--
T ss_pred CCcHHhCCcchhh-HHhCC-------eEcC-CCCEEECHHHHHHHHhcC-----------CCCCCCCCCCCccccccc--
Confidence 4467889999999 89999 8886 65 799999999999752 38999988765 34444
Q ss_pred eeCCcHHHHHHHHHHHh
Q 023176 267 WYYTPEEKQEIIDSYKS 283 (286)
Q Consensus 267 ~~~~~~~k~~li~~yk~ 283 (286)
.+-+..|+.|.+
T Consensus 945 -----~~Lk~~I~~w~~ 956 (968)
T 3m62_A 945 -----EELRQKILCFKK 956 (968)
T ss_dssp -----HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHH
Confidence 456677887765
No 103
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=68.39 E-value=1 Score=38.98 Aligned_cols=24 Identities=25% Similarity=0.736 Sum_probs=0.0
Q ss_pred CccCChhhhcCCCCCCCCCcccCCCC
Q 023176 130 DRSICSFAAAGNCPRGEKCPHIHGDT 155 (286)
Q Consensus 130 ~~~lC~y~~~G~C~~Gd~C~y~Hg~~ 155 (286)
+.++|+|.. .|-||.+|.|.|++-
T Consensus 191 ~~~~~~~~~--~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYGR--KCTYGIKCRFFHPER 214 (223)
T ss_dssp --------------------------
T ss_pred CCCCCCCCc--ccccCCcceecCCcc
Confidence 457799976 799999999999985
No 104
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=60.10 E-value=0.73 Score=33.26 Aligned_cols=16 Identities=25% Similarity=0.868 Sum_probs=14.4
Q ss_pred CCCCcCcHHHHHHHHh
Q 023176 220 ECDHPFCISCIRNWRS 235 (286)
Q Consensus 220 ~C~H~fC~~Ci~~w~~ 235 (286)
.|+|.||..|...|-.
T Consensus 55 ~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCEETTTTEECCS
T ss_pred CCCCeeccccCccccC
Confidence 6999999999999964
No 105
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=58.00 E-value=6.3 Score=27.22 Aligned_cols=51 Identities=22% Similarity=0.361 Sum_probs=34.3
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
..+..|.||.+. . .+.+=..|...|.+.|+.-........ .-.||.|+...
T Consensus 10 ~~~~~C~vC~~~--~-------~ll~Cd~C~~~~H~~Cl~P~l~~~P~g-------~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG--T-------DVLRCTHCAAAFHWRCHFPAGTSRPGT-------GLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC--T-------TCEECSSSCCEECHHHHCTTTCCCCSS-------SCCCTTTTTCC
T ss_pred CCCCCcCCCCCC--C-------eEEECCCCCCceecccCCCccCcCCCC-------CEECccccCCC
Confidence 445779999862 1 234556799999999997555433222 24899998653
No 106
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=54.01 E-value=14 Score=29.11 Aligned_cols=51 Identities=20% Similarity=0.410 Sum_probs=32.5
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHH------HhhC-CCCCCCcCCCcCcccCCCcc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNW------RSSS-PTSGMDVNTALRACPICRKL 257 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w------~~~~-~~~~~~~~~~~~~CP~CR~~ 257 (286)
...+..|.||.+- ... ..=..|-.+||..||..- .+.. ... .-.|++|+-.
T Consensus 54 Dg~~~~C~vC~dG--------G~L-lcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~-------~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEG--------GNL-ICCDFCHNAFCKKCILRNLGRRELSTIMDENN-------QWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCC--------SEE-EECSSSSCEEEHHHHHHHTCHHHHHHHTCTTS-------CCCCTTTCCG
T ss_pred CCCCCcCeecCCC--------Cee-EecCCCchhhhHHHhCCCcchhHHHHhccCCC-------CeEcCCcCCH
Confidence 3456779999983 111 233579999999999853 2321 222 2489999654
No 107
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=48.67 E-value=19 Score=28.71 Aligned_cols=51 Identities=20% Similarity=0.432 Sum_probs=33.5
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHh------h-CCCCCCCcCCCcCcccCCCcc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRS------S-SPTSGMDVNTALRACPICRKL 257 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~------~-~~~~~~~~~~~~~~CP~CR~~ 257 (286)
...+..|.||.+- . .+..-..|--+||+.||..-.. . .... .-.||+|+..
T Consensus 60 Dg~~d~C~vC~~G--------G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~-------~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG--------G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENN-------QWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC--------S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTT-------CCCCTTTCCC
T ss_pred CCCCCeecccCCC--------C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCC-------CCEeecccCc
Confidence 4567899999983 1 1234457899999999985332 1 1211 2489999854
No 108
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=48.06 E-value=1.1 Score=32.75 Aligned_cols=21 Identities=29% Similarity=1.007 Sum_probs=15.9
Q ss_pred ecCCCCCcCcHHHHHHHHhhC
Q 023176 217 LLSECDHPFCISCIRNWRSSS 237 (286)
Q Consensus 217 ~l~~C~H~fC~~Ci~~w~~~~ 237 (286)
.=+.|++.||+.|-..|...+
T Consensus 45 ~C~~C~~~FC~~C~~~w~~~H 65 (86)
T 2ct7_A 45 TCPQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp ECTTTCCEECSSSCSBCCTTT
T ss_pred EeCCCCCccccccCCchhhcC
Confidence 333699999999999995443
No 109
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=43.86 E-value=5.1 Score=30.24 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=25.9
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHH
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~ 234 (286)
...+..|.||.+. -+. ..+..=..|...|...||....
T Consensus 4 ~~~~~~C~~C~~~-g~~-----~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 4 GSSGANCAVCDSP-GDL-----LDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCCCSCBTTTCCC-CCT-----TTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCCCcCCCCC-CCC-----cCCeECCCCCCCcChHHhCCcc
Confidence 4568899999883 211 1223446799999999997654
No 110
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=36.58 E-value=41 Score=22.80 Aligned_cols=38 Identities=16% Similarity=0.098 Sum_probs=29.3
Q ss_pred cCcccCCCccccccccCceeeCCcHHHHHHHHHHHhhc
Q 023176 248 LRACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKL 285 (286)
Q Consensus 248 ~~~CP~CR~~~~~~~p~~~~~~~~~~k~~li~~yk~~~ 285 (286)
...||.|-.......|..|-..|..-+..+.-+-+-+|
T Consensus 18 k~~CP~CG~~T~~~hParfSp~Dky~~yR~~~kk~~~~ 55 (60)
T 2apo_B 18 KEICPKCGEKTVIPKPPKFSLEDRWGKYRRMLKRALKN 55 (60)
T ss_dssp SSBCSSSCSBCBCCCCCCCCTTCTTHHHHHHHHHHHHT
T ss_pred cccCcCCCCcCCCCCCCCCCCCcchHHHHHHHHHHhcc
Confidence 35899999999999999998888877777665544433
No 111
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=35.59 E-value=19 Score=24.14 Aligned_cols=52 Identities=21% Similarity=0.528 Sum_probs=33.5
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~ 257 (286)
+...+..|.||.+. . .+..=..|.-.|.+.|+.--...... ..-.||.|+..
T Consensus 7 ~~~~~~~C~vC~~~--g-------~ll~CD~C~~~fH~~Cl~p~l~~~p~-------g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG--G-------EIILCDTCPRAYHMVCLDPDMEKAPE-------GKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCC--S-------SEEECSSSSCEEEHHHHCTTCCSCCC-------SSCCCTTGGGG
T ss_pred cCCCCCCCccCCCC--C-------cEEECCCCChhhhhhccCCCCCCCCC-------CceECcccccc
Confidence 34567889999872 1 22444578889999999753322211 13589999764
No 112
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=35.01 E-value=25 Score=28.63 Aligned_cols=67 Identities=15% Similarity=0.448 Sum_probs=38.7
Q ss_pred ccCcccccccccccccCccccccceeecC--CCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc--ccccCce
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLS--ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPSVI 266 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~--~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~--~~~p~~~ 266 (286)
+..+.-|.||-+- ....+=. +|-..||..||..+......... ...-.-.|=+|.-... .+.+-.-
T Consensus 76 DG~~~yC~wC~~G---------g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i-~~~d~W~Cy~C~P~~l~~ll~~R~d 145 (159)
T 3a1b_A 76 DGYQSYCTICCGG---------REVLMCGNNNCCRCFCVECVDLLVGPGAAQAA-IKEDPWNCYMCGHKGTYGLLRRRED 145 (159)
T ss_dssp TSSBSSCTTTSCC---------SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHH-HTSSSCCCTTTCSSCEETTEEBCTT
T ss_pred CCCcceeeEecCC---------CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHH-hccCCCEEEecCCccHHHHhhhhhh
Confidence 4457899999983 1112222 58899999999887654211000 0011247999986542 4555444
Q ss_pred e
Q 023176 267 W 267 (286)
Q Consensus 267 ~ 267 (286)
|
T Consensus 146 w 146 (159)
T 3a1b_A 146 W 146 (159)
T ss_dssp H
T ss_pred H
Confidence 5
No 113
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=34.83 E-value=14 Score=25.01 Aligned_cols=43 Identities=26% Similarity=0.617 Sum_probs=27.7
Q ss_pred ccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCC
Q 023176 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (286)
Q Consensus 195 ~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~C 254 (286)
..|--|...+.++ .+|. =+.|++.||++|=.=--.. ...||-|
T Consensus 16 ~~C~~C~~~~~~~-----~~y~-C~~C~~~FC~dCD~fiHe~-----------Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQ-----HVYV-CAVCQNVFCVDCDVFVHDS-----------LHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTS-----EEEC-CTTTTCCBCHHHHHTTTTT-----------SCSSSTT
T ss_pred CcccccCcccCCC-----ccEE-CCccCcCcccchhHHHHhh-----------ccCCcCC
Confidence 4699998864332 1343 4589999999995432211 2489887
No 114
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=33.49 E-value=9.4 Score=25.72 Aligned_cols=51 Identities=22% Similarity=0.434 Sum_probs=31.7
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~ 257 (286)
...+..|.||.+. . .+.+=..|.-.|.+.|+.--...... ..-.||.|+..
T Consensus 6 d~~~~~C~vC~~~--g-------~ll~Cd~C~~~fH~~Cl~ppl~~~p~-------g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG--G-------ELLCCDTCPSSYHIHCLNPPLPEIPN-------GEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC--S-------SCBCCSSSCCCBCSSSSSSCCSSCCS-------SCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC--C-------CEEEcCCCCHHHcccccCCCcCcCCC-------CccCChhhcCc
Confidence 4557889999872 1 12344468888999998642222111 12489999865
No 115
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=33.16 E-value=15 Score=26.16 Aligned_cols=58 Identities=26% Similarity=0.587 Sum_probs=34.3
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~ 257 (286)
...+-..|.+|... |.- ..|+..- -+||.+||..|......-.. ..+.++.|-.|-..
T Consensus 15 ~d~~~~~C~~C~~~-Fs~---~~RrHHC-R~CG~v~C~~Cs~~~~~l~~-----~~~~~RVC~~C~~~ 72 (82)
T 2yw8_A 15 KDDEATHCRQCEKE-FSI---SRRKHHC-RNCGHIFCNTCSSNELALPS-----YPKPVRVCDSCHTL 72 (82)
T ss_dssp CCCCCCBCTTTCCB-CBT---TBCCEEC-TTTCCEECSGGGCEEECCTT-----CSSCEEECHHHHHH
T ss_pred cCccCCcccCcCCc-ccC---ccccccC-CCCCCEEChHHhCCeeecCC-----CCCcCEECHHHHHH
Confidence 44455689999885 431 1233333 37999999999865332111 12345777777543
No 116
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=30.36 E-value=18 Score=27.12 Aligned_cols=13 Identities=31% Similarity=1.066 Sum_probs=11.8
Q ss_pred cCcHHHHHHHHhh
Q 023176 224 PFCISCIRNWRSS 236 (286)
Q Consensus 224 ~fC~~Ci~~w~~~ 236 (286)
.||..|+.+|...
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999985
No 117
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=29.62 E-value=21 Score=26.83 Aligned_cols=14 Identities=36% Similarity=1.113 Sum_probs=12.2
Q ss_pred cCcHHHHHHHHhhC
Q 023176 224 PFCISCIRNWRSSS 237 (286)
Q Consensus 224 ~fC~~Ci~~w~~~~ 237 (286)
.||..|+.+|....
T Consensus 42 GFCRNCLskWy~~a 55 (105)
T 2o35_A 42 GFCRNCLSNWYREA 55 (105)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999863
No 118
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.53 E-value=77 Score=25.42 Aligned_cols=64 Identities=25% Similarity=0.435 Sum_probs=43.6
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~ 270 (286)
.+..|.||... |.-. .-+..+=.+|.|.+|..|-. |... ...-.|=+|++.-...+-+..|+.+
T Consensus 67 ~~~~C~~C~~~-fg~l---~~~g~~C~~C~~~VC~~C~~-~~~~---------~~~W~C~vC~k~rel~~kSGeWf~~ 130 (153)
T 2zet_C 67 NETHCARCLQP-YRLL---LNSRRQCLECSLFVCKSCSH-AHPE---------EQGWLCDPCHLARVVKIGSLEWYYQ 130 (153)
T ss_dssp GGTBCTTTCCB-GGGC---SSCCEECTTTCCEECGGGEE-CCSS---------SSSCEEHHHHHHHHHHHHHCHHHHH
T ss_pred CCccchhhcCc-cccc---cCCCCcCCCCCchhhccccc-ccCC---------CCcEeeHHHHHHHHHHHhccHHHHH
Confidence 57899999995 2111 11225556899999999973 2211 1235899999988777777788754
No 119
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=29.18 E-value=6.5 Score=26.63 Aligned_cols=40 Identities=23% Similarity=0.595 Sum_probs=25.2
Q ss_pred cccccccccccccCccccccceeecCC--CCCcCcHHHHHHHHhh
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSE--CDHPFCISCIRNWRSS 236 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~--C~H~fC~~Ci~~w~~~ 236 (286)
-..|+-|.-. .++.. .-...+-.+ |+|.||..|...|...
T Consensus 6 ~k~CP~C~~~-Iek~~--GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVT-IEKDG--GCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCC-CSSCC--SCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCe-eEeCC--CCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4578888884 45532 222234334 8888888888888754
No 120
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=27.64 E-value=38 Score=21.45 Aligned_cols=49 Identities=29% Similarity=0.655 Sum_probs=29.3
Q ss_pred cccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcc
Q 023176 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (286)
Q Consensus 196 ~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~ 257 (286)
.|.||.+. -+ +..+..=..|.-.|.+.|+.-=...... ..-.||.|+..
T Consensus 2 ~C~vC~~~-~~-----~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~-------g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK-GE-----DDKLILCDECNKAFHLFCLRPALYEVPD-------GEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS-SC-----CSCCEECTTTCCEECHHHHCTTCCSCCS-------SCCSCTTTSCC
T ss_pred CCCCCCCC-CC-----CCCEEECCCCChhhCcccCCCCcCCCCC-------CcEECcCcccc
Confidence 58899873 11 1233455679999999999531211111 12589999763
No 121
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=27.63 E-value=13 Score=22.38 Aligned_cols=13 Identities=23% Similarity=0.723 Sum_probs=10.1
Q ss_pred cCccccccccccc
Q 023176 192 SQEIECSVCLDRV 204 (286)
Q Consensus 192 ~~~~~C~IC~e~i 204 (286)
++...|+|||..+
T Consensus 3 ~EGFiCP~C~~~l 15 (34)
T 3mjh_B 3 SEGFICPQCMKSL 15 (34)
T ss_dssp SEEEECTTTCCEE
T ss_pred CcccCCcHHHHHc
Confidence 4568999999853
No 122
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=27.13 E-value=16 Score=30.73 Aligned_cols=54 Identities=22% Similarity=0.441 Sum_probs=33.7
Q ss_pred hccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 190 ~~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
+...+..|.||.+. + ....=..|...|+..|+.-....... ..-.||.|+....
T Consensus 3 ~d~~~~~C~~C~~~-------g--~ll~Cd~C~~~~H~~Cl~p~l~~~p~-------~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 3 DDPNEDWCAVCQNG-------G--DLLCCEKCPKVFHLTCHVPTLLSFPS-------GDWICTFCRDIGK 56 (207)
T ss_dssp CCSSCSSBTTTCCC-------E--EEEECSSSSCEECTTTSSSCCSSCCS-------SCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCCC-------C--ceEEcCCCCCccCCccCCCCCCCCCC-------CCEEeCceeCccc
Confidence 34567789999863 1 12344568888999997543322111 1258999998653
No 123
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.13 E-value=19 Score=25.74 Aligned_cols=36 Identities=22% Similarity=0.521 Sum_probs=23.2
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHH
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN 232 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~ 232 (286)
.+-..|.+|... |.- ..|+--- -+||.+||..|...
T Consensus 12 ~~~~~C~~C~~~-F~~---~~RrHHC-R~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSAT-FSV---LKKRRSC-SNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCC-CCS---SSCCEEC-SSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCc-ccc---chhhhhh-cCCCcEEChhhcCC
Confidence 344679999885 331 1233333 36999999999754
No 124
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.04 E-value=67 Score=25.17 Aligned_cols=68 Identities=15% Similarity=0.382 Sum_probs=43.1
Q ss_pred cCccccccccccc-ccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176 192 SQEIECSVCLDRV-LSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (286)
Q Consensus 192 ~~~~~C~IC~e~i-~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~ 270 (286)
..+..|.||...+ +-.. .-.+=.+|.|.+|.+|-..-...+ +...-.|=+|++.-...+-+..|+.+
T Consensus 53 ~~~~~C~~C~~~~g~l~~-----~g~~C~~C~~~VC~~C~~~~~~~~-------~~~~W~C~vC~k~rel~~kSG~Wf~~ 120 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGS-----ASVVCEDCKKNVCTKCGVETSNNR-------PHPVWLCKICLEQREVWKRSGAWFFK 120 (134)
T ss_dssp CSSSBCSSSCCBCSTTSC-----CEEECTTTCCEEETTSEEECCCSS-------SSCCEEEHHHHHHHHHHHHTSHHHHT
T ss_pred CCCccccccCCCcccccC-----CCCCCCCCCcccccccCCccCCCC-------CccceechhhHHHHHHHHhhhHHHHh
Confidence 5678899999975 2211 113445799999999954321111 12345899999887777777777654
Q ss_pred c
Q 023176 271 P 271 (286)
Q Consensus 271 ~ 271 (286)
.
T Consensus 121 ~ 121 (134)
T 1zbd_B 121 G 121 (134)
T ss_dssp S
T ss_pred c
Confidence 3
No 125
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=23.97 E-value=35 Score=24.74 Aligned_cols=55 Identities=18% Similarity=0.452 Sum_probs=33.8
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCcc
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~ 257 (286)
+-..|.+|... |.- ..|+..-- +||++||..|...+..-.. ..+.++.|-.|-..
T Consensus 19 ~~~~C~~C~~~-F~~---~~RrhhCr-~CG~v~C~~Cs~~~~~l~~-----~~~~~RVC~~C~~~ 73 (90)
T 3t7l_A 19 EAPNCMNCQVK-FTF---TKRRHHCR-ACGKVFCGVCCNRKCKLQY-----LEKEARVCVVCYET 73 (90)
T ss_dssp GCCBCTTTCCB-CCS---SSCCEECT-TTCCEECGGGSCEEEEETT-----TTEEEEECHHHHHH
T ss_pred cCCcCcCCCCc-ccc---hhhCcccc-CCCCEECCcccCCeeecCC-----CCCCCeECHHHHHH
Confidence 34579999884 431 23444444 7999999999876543221 12345677777543
No 126
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=22.81 E-value=2e+02 Score=20.66 Aligned_cols=74 Identities=27% Similarity=0.485 Sum_probs=42.7
Q ss_pred cCcccccccccccccCccccccceeecC-CCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccccccccCceeeCC
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLS-ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~-~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~~~~~p~~~~~~~ 270 (286)
+.-+.|.+|.|. +++. .|+--| .=.|.||+-|-+...+.... ....-||.=.+- .++--+.-|.--
T Consensus 13 ~a~l~CtlC~er-LEdt-----HFVQCPsv~~HkFCFpCsr~sIk~q~~------~~EvyCPSG~kC-pL~gS~~PWAFm 79 (93)
T 2cs3_A 13 SGPLCCTICHER-LEDT-----HFVQCPSVPSHKFCFPCSRESIKAQGA------TGEVYCPSGEKC-PLVGSNVPWAFM 79 (93)
T ss_dssp CCSCCCSSSCSC-CSST-----TSEECSSCSSCEECHHHHHHHHHHHHS------SSCCCCTTSSCC-BCSSSSSBCCCC
T ss_pred CCeeEeecchhh-hccC-----ceeeCCCccCCeeeccccHHHHHhcCC------CCcEECCCCCcc-ccCCCcCchHHH
Confidence 456889999996 5543 555422 24799999999987765321 112355543221 112223336655
Q ss_pred cHHHHHHH
Q 023176 271 PEEKQEII 278 (286)
Q Consensus 271 ~~~k~~li 278 (286)
..|...|+
T Consensus 80 qgEIatIL 87 (93)
T 2cs3_A 80 QGEIATIL 87 (93)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHh
Confidence 66666665
No 127
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=22.54 E-value=51 Score=30.65 Aligned_cols=67 Identities=15% Similarity=0.423 Sum_probs=39.2
Q ss_pred ccCcccccccccccccCccccccceeecC--CCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc--cccccCce
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLS--ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS--YFVIPSVI 266 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~--~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~--~~~~p~~~ 266 (286)
...+..|.||-+- - ...+=. +|...||..||..+......... ...-.-.|=+|.-.. .++.+-.-
T Consensus 90 DG~~~yCr~C~~G-g--------~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i-~~~d~W~Cf~C~p~p~~~ll~~r~~ 159 (386)
T 2pv0_B 90 DGYQSYCSICCSG-E--------TLLICGNPDCTRCYCFECVDSLVGPGTSGKV-HAMSNWVCYLCLPSSRSGLLQRRRK 159 (386)
T ss_dssp SSSBCSCTTTCCC-S--------SCEECCSTTCCCEECHHHHHHHTCTTHHHHH-HHCSSCCCTTTSSCCEETTEEBCSS
T ss_pred CCCcccceEcCCC-C--------eEEEeCCCCCCcchHHHHHHHhcChhHHHHh-hccCCceEEEcCCcchHhhhhhhhh
Confidence 4567899999984 1 112323 68899999999988743210000 000124899998664 24555445
Q ss_pred e
Q 023176 267 W 267 (286)
Q Consensus 267 ~ 267 (286)
|
T Consensus 160 w 160 (386)
T 2pv0_B 160 W 160 (386)
T ss_dssp H
T ss_pred H
Confidence 5
No 128
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=22.30 E-value=16 Score=20.23 Aligned_cols=15 Identities=40% Similarity=1.220 Sum_probs=10.7
Q ss_pred cccccccCCCCCCCCCc
Q 023176 33 NICTYYQKGFCSYGSRC 49 (286)
Q Consensus 33 ~~C~~f~~G~C~~G~~C 49 (286)
..|..|-+|+| |++|
T Consensus 4 vscv~fgngfc--gdnc 18 (27)
T 2hgo_A 4 VSCVNFGNGFC--GDNC 18 (27)
T ss_dssp CSCEEETTTEE--ECSS
T ss_pred eEeEeecCccc--cCCc
Confidence 45777888888 5666
No 129
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=22.19 E-value=60 Score=23.78 Aligned_cols=39 Identities=26% Similarity=0.531 Sum_probs=14.6
Q ss_pred ccCCCCCCCC---------CccCCCC---CCCccccccc--CCCCCCCCCccc
Q 023176 13 GACLKGEHCE---------FSHDWKD---PPNNICTYYQ--KGFCSYGSRCRY 51 (286)
Q Consensus 13 G~C~~G~~C~---------f~H~~~~---~~~~~C~~f~--~G~C~~G~~C~y 51 (286)
-.|++|..|. |+|..+. ....+....- +-.|.||..|--
T Consensus 15 ~~C~yG~~CYRkNp~H~~~fsHP~d~dY~Dp~~~~~~~~~~~p~C~YG~~CYR 67 (89)
T 2kqb_A 15 TSCMYGANCYRKNPVHFQHFSHPGDSDYGGVQIVGQDETDDRPECPYGPSCYR 67 (89)
T ss_dssp EECTTTTCCCCCCTTHHHHEECTTSTTCCCCCCSSTTTCCC------------
T ss_pred CCCCCCcccccCChHHHhhccCCCcccccCcccccccCCCCCCCCCCchhhhc
Confidence 4588888884 8886543 1122233223 336999999953
No 130
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=21.67 E-value=24 Score=28.87 Aligned_cols=50 Identities=28% Similarity=0.543 Sum_probs=31.3
Q ss_pred CcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 193 ~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
.+..|.||.+. . ....=..|.-.|+..|+.--...... ..-.||.|+...
T Consensus 3 ~~~~C~~C~~~--g-------~ll~Cd~C~~~~H~~C~~p~l~~~p~-------~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG--G-------ELLCCEKCPKVFHLSCHVPTLTNFPS-------GEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC--S-------SCEECSSSSCEECTTTSSSCCSSCCS-------SCCCCTTTSCSS
T ss_pred CCCccccCCCC--C-------eeeecCCCCcccCccccCCCCCCCCC-------CCEECccccCcc
Confidence 46779999863 1 12344568888889997533322111 125899999865
No 131
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=21.28 E-value=95 Score=28.54 Aligned_cols=51 Identities=24% Similarity=0.497 Sum_probs=33.6
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHH--HHHHhhCCCCCCCcCCCcCcccCCCcccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCI--RNWRSSSPTSGMDVNTALRACPICRKLSY 259 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci--~~w~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (286)
.-.+.|+|=+.. +.-| +--..|.|.-|++=. .+...... .-.||+|.+...
T Consensus 213 ~vSL~CPlS~~r-i~~P-------~Rg~~C~HlqCFDl~sfL~~~~~~~---------~W~CPiC~k~~~ 265 (360)
T 4fo9_A 213 RVSLMCPLGKMR-LTIP-------CRAVTCTHLQCFDAALYLQMNEKKP---------TWICPVCDKKAA 265 (360)
T ss_dssp EEESBCTTTCSB-CSSE-------EEETTCCCCCCEEHHHHHHHHHHSC---------CCBCTTTCSBCC
T ss_pred EEeeeCCCccce-eccC-------CcCCCCCCCccCCHHHHHHHHhhCC---------CeECCCCCcccC
Confidence 345789999984 5666 444579999776642 33332221 369999998763
No 132
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=21.01 E-value=25 Score=24.29 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=33.1
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
.++..|.||-.. .+ +..+..=.+|.--|.+.|+.--..... .....||.|+...
T Consensus 16 ~~~~~C~~C~~~-~~-----~~~mi~CD~C~~wfH~~Cv~~~~~~~~-------~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKP-DD-----GSPMIGCDDCDDWYHWPCVGIMAAPPE-------EMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBC-CS-----SCCEEECSSSSSEEEHHHHTCSSCCCS-------SSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCC-CC-----CCCEEEcCCCCcccccccCCCCccCCC-------CCCEEChhccCch
Confidence 445679999874 22 122344456888899999864332211 1246899998754
No 133
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=20.47 E-value=1.2e+02 Score=22.12 Aligned_cols=63 Identities=19% Similarity=0.368 Sum_probs=36.3
Q ss_pred ccCcccccccccccccCccccccceeecCCCCCcCcHHHHHHHHhhCCCCCCC-----cCCCcCcccCCCccccc
Q 023176 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMD-----VNTALRACPICRKLSYF 260 (286)
Q Consensus 191 ~~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~~~~~~~~~~-----~~~~~~~CP~CR~~~~~ 260 (286)
-..|..|.||-. +.. +..|.-- -|+-+|...|++.-..-.+..... ...+--+||.|..-.-+
T Consensus 12 ~~~D~~C~VC~~--~t~----~~l~pCR-vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~lL 79 (89)
T 1wil_A 12 VVNDEMCDVCEV--WTA----ESLFPCR-VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLL 79 (89)
T ss_dssp CCCSCCCTTTCC--CCS----SCCSSCS-SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCSS
T ss_pred CCCCcccCcccc--ccc----cceeccc-cccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhhh
Confidence 346889999974 222 1223333 289999999999864332221110 11233599999665433
No 134
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.39 E-value=29 Score=29.29 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=23.8
Q ss_pred cccccccccccccCccccccceeecCCCCCcCcHHHHHHHH
Q 023176 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (286)
Q Consensus 194 ~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~Ci~~w~ 234 (286)
+..|.+|... |.- -.|+-.- -+||++||..|.....
T Consensus 161 ~~~C~~C~~~-F~~---~~rrhhC-r~CG~v~C~~Cs~~~~ 196 (220)
T 1dvp_A 161 GRVCHRCRVE-FTF---TNRKHHC-RNCGQVFCGQCTAKQC 196 (220)
T ss_dssp CSBCTTTCCB-CCS---SSCCEEC-TTTCCEECSTTSCEEE
T ss_pred CCccCCCCCc-cCC---ccccccc-CCcCCEEChHHhCCee
Confidence 4689999874 431 1233333 3799999999986543
No 135
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=20.35 E-value=99 Score=28.54 Aligned_cols=50 Identities=18% Similarity=0.474 Sum_probs=33.4
Q ss_pred cCcccccccccccccCccccccceeecCCCCCcCcHHH--HHHHHhhCCCCCCCcCCCcCcccCCCccc
Q 023176 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISC--IRNWRSSSPTSGMDVNTALRACPICRKLS 258 (286)
Q Consensus 192 ~~~~~C~IC~e~i~~~~~~~~~~~~~l~~C~H~fC~~C--i~~w~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (286)
.-.+.|+|=+.. +..| +--..|.|.-|++= +.+..... ..-.||+|.+..
T Consensus 247 ~vSL~CPlS~~r-i~~P-------vRg~~C~HlQCFDl~sfL~~~~~~---------~~W~CPIC~k~~ 298 (371)
T 3i2d_A 247 IMSLQCPISYTR-MKYP-------SKSINCKHLQCFDALWFLHSQLQI---------PTWQCPVCQIDI 298 (371)
T ss_dssp EEESBCTTTSSB-CSSE-------EEETTCCSSCCEEHHHHHHHHHHS---------CCCBCTTTCCBC
T ss_pred EEeecCCCcccc-cccc-------CcCCcCCCcceECHHHHHHHhhcC---------CceeCCCCCccc
Confidence 345889999984 6666 44457999977765 23333222 136999998875
Done!