Query 023178
Match_columns 286
No_of_seqs 134 out of 1222
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:01:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023178.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023178hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 7E-52 1.5E-56 370.2 30.6 253 3-281 62-332 (365)
2 KOG0697 Protein phosphatase 1B 100.0 2.5E-50 5.4E-55 332.7 24.1 262 4-284 20-296 (379)
3 PTZ00224 protein phosphatase 2 100.0 2E-47 4.4E-52 342.6 29.5 244 5-282 21-274 (381)
4 KOG0698 Serine/threonine prote 100.0 6.5E-47 1.4E-51 336.6 29.9 256 8-283 42-308 (330)
5 PF00481 PP2C: Protein phospha 100.0 1.1E-47 2.3E-52 331.5 18.1 242 7-271 1-254 (254)
6 COG0631 PTC1 Serine/threonine 100.0 3.2E-45 6.9E-50 315.8 23.4 243 4-282 6-255 (262)
7 KOG0699 Serine/threonine prote 100.0 1E-42 2.2E-47 297.0 20.5 252 5-280 21-504 (542)
8 cd00143 PP2Cc Serine/threonine 100.0 4E-41 8.7E-46 289.7 29.1 250 6-278 1-254 (254)
9 smart00332 PP2Cc Serine/threon 100.0 2.7E-40 5.9E-45 285.0 29.7 250 3-276 3-255 (255)
10 PRK14559 putative protein seri 100.0 1.8E-40 3.9E-45 313.2 26.6 246 5-285 374-641 (645)
11 KOG0700 Protein phosphatase 2C 100.0 5.3E-41 1.2E-45 292.7 20.5 234 18-266 83-378 (390)
12 KOG1323 Serine/threonine phosp 100.0 5.7E-28 1.2E-32 204.9 20.6 235 32-280 142-488 (493)
13 KOG1379 Serine/threonine prote 99.9 5.5E-25 1.2E-29 186.5 20.7 213 20-277 91-329 (330)
14 KOG0618 Serine/threonine phosp 99.9 6.4E-25 1.4E-29 208.1 16.7 246 5-283 521-776 (1081)
15 PF13672 PP2C_2: Protein phosp 99.9 2.4E-22 5.2E-27 168.7 13.1 182 11-231 3-195 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 1.2E-17 2.6E-22 138.2 21.1 186 6-263 4-192 (193)
17 TIGR02865 spore_II_E stage II 99.7 8.5E-15 1.8E-19 143.3 22.1 192 15-278 562-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.5 5.1E-12 1.1E-16 104.3 21.5 178 32-279 2-193 (193)
19 COG2208 RsbU Serine phosphatas 98.6 1.8E-05 3.9E-10 72.0 22.1 189 19-279 161-366 (367)
20 COG3700 AphA Acid phosphatase 67.2 9.1 0.0002 31.0 3.9 49 204-266 71-130 (237)
21 PF09436 DUF2016: Domain of un 53.3 8.8 0.00019 26.1 1.4 21 199-219 22-42 (72)
22 PF06972 DUF1296: Protein of u 46.8 34 0.00074 22.2 3.3 27 218-261 19-45 (60)
23 PF01436 NHL: NHL repeat; Int 42.6 54 0.0012 17.4 3.7 22 108-129 7-28 (28)
24 PF14459 Prok-E2_C: Prokaryoti 32.6 1.6E+02 0.0035 21.8 5.3 89 51-144 14-102 (131)
25 PF14014 DUF4230: Protein of u 31.3 1.8E+02 0.004 22.5 6.1 40 190-229 75-114 (157)
26 COG2168 DsrH Uncharacterized c 31.0 39 0.00085 24.3 1.9 26 204-229 25-50 (96)
27 PRK06369 nac nascent polypepti 27.1 2.7E+02 0.0059 20.8 6.5 43 187-229 37-86 (115)
28 TIGR02276 beta_rpt_yvtn 40-res 24.4 1.3E+02 0.0028 16.9 3.2 19 113-131 3-21 (42)
29 cd00534 DHNA_DHNTPE Dihydroneo 23.0 3.1E+02 0.0068 20.1 5.8 60 209-280 42-102 (118)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=7e-52 Score=370.24 Aligned_cols=253 Identities=30% Similarity=0.490 Sum_probs=218.8
Q ss_pred cCCeeeEEeecccCCCCCCceeEeeccCC----------CCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 023178 3 FGSLSHGFISVIGRRRVMEDAVTVAIGGI----------DSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKREG 72 (286)
Q Consensus 3 ~~~~~~~~~s~~G~r~~neD~~~~~~~~~----------~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~~~ 72 (286)
++.|+++.+|++|.|+.|||++++..++. ....+|+|||||||+.+|++|++.+++.+.+...
T Consensus 62 ~~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~------- 134 (365)
T PLN03145 62 IPVVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDED------- 134 (365)
T ss_pred cCceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhc-------
Confidence 46789999999999999999998755321 2367999999999999999999999998876321
Q ss_pred CCCCHHHHHHHHHHHhhHHHHhcCC--CCCCCCCeEEEEEEeCceEEEEEeccceEEEEeCCeEEEcCCCCCCCChhhhH
Q 023178 73 CGGGWEDLMAACFLKMDEEVTGAGR--DASSVGPSALVVMVDEEELVVANRGNSRIVLCRAGVAVPLSRDHKPDKPDESE 150 (286)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~l~~~~~--~~~~~gsT~~~~~i~~~~l~~a~vGDsr~~l~~~g~~~~lt~dh~~~~~~e~~ 150 (286)
....+.++|.++|.++++.+..... ....+|||++++++.++.+|+||+||||+|++++|++++||.||++.++.|+.
T Consensus 135 ~~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~ 214 (365)
T PLN03145 135 FPREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERK 214 (365)
T ss_pred cchhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHH
Confidence 2346788999999999999876542 33469999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcCCeEEeecCceecceeecccccCCCCCCCC------ccccCceEEEEEcCCCCeEEEEEcCCCcCCCCHHHHH
Q 023178 151 RVRVEAAGGGITNWYGCRVLGVLTTSASIGDQNLKPY------VVLSKPEVTVNARSELDEFIVIATRGLWDVVSNEFAC 224 (286)
Q Consensus 151 ~~ri~~~gg~~~~~~~~~~~~~~~~tr~lG~~~~k~~------~v~~~p~i~~~~l~~~~~~lll~SDGv~d~l~~~ei~ 224 (286)
|++..||.+.. .++.|.+.+||+|||..+|.. .++++|++..+++.++|+|||||||||||+|+++++.
T Consensus 215 --RI~~~Gg~v~~---g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v 289 (365)
T PLN03145 215 --RIEASGGYVYD---GYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAV 289 (365)
T ss_pred --HHHHcCCceec---ceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHH
Confidence 99999998864 678888999999999877632 2478999999999988999999999999999999999
Q ss_pred HHHHHhhhccccccCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCC
Q 023178 225 EVVRRCLTGQLRLRFPEECSGSGPSGAAEAATMLAELALARGSKHNISVIVVELKKS 281 (286)
Q Consensus 225 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~ 281 (286)
+++++.+.. ..+++++|+.|++.|+.+++.||+|+|||+|++.
T Consensus 290 ~~i~~~l~~--------------~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~~ 332 (365)
T PLN03145 290 DFARRRLQE--------------HNDPVMCSKELVDEALKRKSGDNLAVVVVCFQSQ 332 (365)
T ss_pred HHHHHHHhc--------------CCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeecC
Confidence 888765431 2578999999999999999999999999999863
No 2
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-50 Score=332.66 Aligned_cols=262 Identities=35% Similarity=0.553 Sum_probs=231.7
Q ss_pred CCeeeEEeecccCCCCCCceeEeeccCC---CCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCCHHH
Q 023178 4 GSLSHGFISVIGRRRVMEDAVTVAIGGI---DSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKR-EGCGGGWED 79 (286)
Q Consensus 4 ~~~~~~~~s~~G~r~~neD~~~~~~~~~---~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~-~~~~~~~~~ 79 (286)
++++||.+|++|||-+|||+..+..... .+|.||+|||||.|++.+.++++++.+.+...-...... ..+-+++++
T Consensus 20 Nglryg~SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~~~ 99 (379)
T KOG0697|consen 20 NGLRYGVSSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENVEK 99 (379)
T ss_pred CceeeeeccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHHHh
Confidence 5899999999999999999988775444 789999999999999999999999999887654332200 123347889
Q ss_pred HHHHHHHHhhHHHHhcCC---CCCCCCCeEEEEEEeCceEEEEEeccceEEEEeCCeEEEcCCCCCCCChhhhHHHHHHh
Q 023178 80 LMAACFLKMDEEVTGAGR---DASSVGPSALVVMVDEEELVVANRGNSRIVLCRAGVAVPLSRDHKPDKPDESERVRVEA 156 (286)
Q Consensus 80 ~l~~~~~~~~~~l~~~~~---~~~~~gsT~~~~~i~~~~l~~a~vGDsr~~l~~~g~~~~lt~dh~~~~~~e~~~~ri~~ 156 (286)
-|+..|+++++.+..... ...++|||++++++....+|++|+||||++++|+|..+.-|.||.|.++.|++ ||+.
T Consensus 100 GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~Eke--RIqn 177 (379)
T KOG0697|consen 100 GIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKE--RIQN 177 (379)
T ss_pred hHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHH--HHhc
Confidence 999999999999887774 33459999999999999999999999999999999999999999999999999 9999
Q ss_pred cCCeEEeecCceecceeecccccCCCCCCC--------CccccCceEEEEEcCCCCeEEEEEcCCCcCCCCHHHHHHHHH
Q 023178 157 AGGGITNWYGCRVLGVLTTSASIGDQNLKP--------YVVLSKPEVTVNARSELDEFIVIATRGLWDVVSNEFACEVVR 228 (286)
Q Consensus 157 ~gg~~~~~~~~~~~~~~~~tr~lG~~~~k~--------~~v~~~p~i~~~~l~~~~~~lll~SDGv~d~l~~~ei~~i~~ 228 (286)
+||.+.- .|++|.|+++|+|||+++|. .+|+|+|++......+.|+||||++||+||+|+++|+.++++
T Consensus 178 AGGSVMI---qRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~ 254 (379)
T KOG0697|consen 178 AGGSVMI---QRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVK 254 (379)
T ss_pred CCCeEEE---EEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHH
Confidence 9998885 89999999999999999983 357999999999999889999999999999999999999998
Q ss_pred HhhhccccccCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCCCC
Q 023178 229 RCLTGQLRLRFPEECSGSGPSGAAEAATMLAELALARGSKHNISVIVVELKKSSTI 284 (286)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~~~~ 284 (286)
..+.- ..+..++|..+++.++-+|++||+|+|++-|.+.|+.
T Consensus 255 sRl~V--------------t~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp~APkv 296 (379)
T KOG0697|consen 255 SRLEV--------------TSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFPGAPKV 296 (379)
T ss_pred hhhee--------------cccHHHHHHHHHHHHHhccCccCceEEEEecCCCCCC
Confidence 75432 3788999999999999999999999999999887753
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=2e-47 Score=342.60 Aligned_cols=244 Identities=32% Similarity=0.481 Sum_probs=207.0
Q ss_pred CeeeEEeecccCCCCCCceeEeeccCCCCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 023178 5 SLSHGFISVIGRRRVMEDAVTVAIGGIDSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKREGCGGGWEDLMAAC 84 (286)
Q Consensus 5 ~~~~~~~s~~G~r~~neD~~~~~~~~~~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 84 (286)
.+.+|+.+++|.|+.|||++++... ++..+|+|||||||..+++++++.+.+.+.+.. .....+.|+++
T Consensus 21 ~~~~g~~s~~G~R~~nED~~~v~~~--~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~---------~~~~~~~l~~a 89 (381)
T PTZ00224 21 IFRCASACVNGYRESMEDAHLLYLT--DDWGFFGVFDGHVNDECSQYLARAWPQALEKEP---------EPMTDERMEEL 89 (381)
T ss_pred cEEEEEEeCCCCCCCCCCeeEeccC--CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcc---------ccccHHHHHHH
Confidence 6889999999999999999887544 456799999999999999999998887664321 11124568999
Q ss_pred HHHhhHHHHhcCCCCCCCCCeEEEEEEe-CceEEEEEeccceEEEEeCCeEEEcCCCCCCCChhhhHHHHHHhcCCeEEe
Q 023178 85 FLKMDEEVTGAGRDASSVGPSALVVMVD-EEELVVANRGNSRIVLCRAGVAVPLSRDHKPDKPDESERVRVEAAGGGITN 163 (286)
Q Consensus 85 ~~~~~~~l~~~~~~~~~~gsT~~~~~i~-~~~l~~a~vGDsr~~l~~~g~~~~lt~dh~~~~~~e~~~~ri~~~gg~~~~ 163 (286)
+..+++.+.... ..+|||++++++. +.++|+||+||||+|++|+|++++||.||++.++.|+. ||.+.|+.+..
T Consensus 90 ~~~~d~~i~~~~---~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~--RI~~~gg~v~~ 164 (381)
T PTZ00224 90 CLEIDEEWMDSG---REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQ--RIEACGGRVVS 164 (381)
T ss_pred HHHHHHHHHhcc---cCCCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHh--HHHHccCEecc
Confidence 999999998665 3569999998886 57999999999999999999999999999999999988 89999998864
Q ss_pred ecCceecceeecccccCCCCCCCC--------ccccCceEEEEEcCCCCeEEEEEcCCCcC-CCCHHHHHHHHHHhhhcc
Q 023178 164 WYGCRVLGVLTTSASIGDQNLKPY--------VVLSKPEVTVNARSELDEFIVIATRGLWD-VVSNEFACEVVRRCLTGQ 234 (286)
Q Consensus 164 ~~~~~~~~~~~~tr~lG~~~~k~~--------~v~~~p~i~~~~l~~~~~~lll~SDGv~d-~l~~~ei~~i~~~~~~~~ 234 (286)
+|+.|.+.+||+||+..+|.. .|+++|++..+++.+ ++||||||||||| +++++|+.+++.+.+..
T Consensus 165 ---~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~-~D~llLaSDGL~d~~ls~eEi~~iv~~~l~~- 239 (381)
T PTZ00224 165 ---NRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQS-NDFIILACDGVFEGNFSNEEVVAFVKEQLET- 239 (381)
T ss_pred ---ccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCC-CCEEEEECCCcCcCccCHHHHHHHHHHHHhc-
Confidence 688999999999999765532 246899999999887 6799999999999 89999999999864321
Q ss_pred ccccCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCC
Q 023178 235 LRLRFPEECSGSGPSGAAEAATMLAELALARGSKHNISVIVVELKKSS 282 (286)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~~ 282 (286)
..+++.+|+.|++.|+.+|+.||+|||||++....
T Consensus 240 -------------~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 240 -------------CDDLAVVAGRVCDEAIRRGSKDNISCLIVQLKDGA 274 (381)
T ss_pred -------------CCCHHHHHHHHHHHHHhcCCCCCEEEEEEEeeCCC
Confidence 25788999999999999999999999999997654
No 4
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=6.5e-47 Score=336.59 Aligned_cols=256 Identities=43% Similarity=0.631 Sum_probs=224.4
Q ss_pred eEEeecccCCCCCCceeEeeccCC------C-CeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHH
Q 023178 8 HGFISVIGRRRVMEDAVTVAIGGI------D-SYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKREGCGGGWEDL 80 (286)
Q Consensus 8 ~~~~s~~G~r~~neD~~~~~~~~~------~-~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (286)
.+..+.+|+|+.+||++....... . ...+|||||||||..+|+|+.++++..+.+.+.... ....+.++
T Consensus 42 ~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~----~~~~~~~a 117 (330)
T KOG0698|consen 42 GSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPK----DRQDVKDA 117 (330)
T ss_pred eEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhccc----chHHHHHH
Confidence 344488888999999998876533 2 588999999999999999999999999999886522 11468999
Q ss_pred HHHHHH-HhhHHHHhcCCCCCCCCCeEEEEEEeCc-eEEEEEeccceEEEEeCC-eEEEcCCCCCCCChhhhHHHHHHhc
Q 023178 81 MAACFL-KMDEEVTGAGRDASSVGPSALVVMVDEE-ELVVANRGNSRIVLCRAG-VAVPLSRDHKPDKPDESERVRVEAA 157 (286)
Q Consensus 81 l~~~~~-~~~~~l~~~~~~~~~~gsT~~~~~i~~~-~l~~a~vGDsr~~l~~~g-~~~~lt~dh~~~~~~e~~~~ri~~~ 157 (286)
++++|. +++..+.........+|||++++++.++ .+|+||+|||||++++.| ..++||.||+|..+.|+. ||+.+
T Consensus 118 ~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~--RI~~~ 195 (330)
T KOG0698|consen 118 LRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERE--RIEAA 195 (330)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHH--HHHHc
Confidence 999999 6999998763234678888888888755 999999999999999866 899999999999999999 99999
Q ss_pred CCeEEeecC-ceecceeecccccCCCCCCCCccccCceEEEEEcCCCCeEEEEEcCCCcCCCCHHHHHHHHHHhhhcccc
Q 023178 158 GGGITNWYG-CRVLGVLTTSASIGDQNLKPYVVLSKPEVTVNARSELDEFIVIATRGLWDVVSNEFACEVVRRCLTGQLR 236 (286)
Q Consensus 158 gg~~~~~~~-~~~~~~~~~tr~lG~~~~k~~~v~~~p~i~~~~l~~~~~~lll~SDGv~d~l~~~ei~~i~~~~~~~~~~ 236 (286)
||.+..+.. +|+.|.++++|+|||..+|+..|+++|++...++.+.++||||+||||||.++++|++++++..+.
T Consensus 196 GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~---- 271 (330)
T KOG0698|consen 196 GGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELA---- 271 (330)
T ss_pred CCEEEEcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhh----
Confidence 999998775 899999999999999999966669999999999999899999999999999999999999998541
Q ss_pred ccCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCCC
Q 023178 237 LRFPEECSGSGPSGAAEAATMLAELALARGSKHNISVIVVELKKSST 283 (286)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~~~ 283 (286)
....+..++..+.+.|..+++.||+|||||.|.+++.
T Consensus 272 ----------~~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~~~ 308 (330)
T KOG0698|consen 272 ----------SISSPLAAAKLLATEALSRGSKDNITVVVVRLKSSPK 308 (330)
T ss_pred ----------ccccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCccc
Confidence 2468899999999999999999999999999988753
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=1.1e-47 Score=331.49 Aligned_cols=242 Identities=39% Similarity=0.633 Sum_probs=206.3
Q ss_pred eeEEeecccCCCCCCceeEeeccC-----CCCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHH
Q 023178 7 SHGFISVIGRRRVMEDAVTVAIGG-----IDSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKREGCGGGWEDLM 81 (286)
Q Consensus 7 ~~~~~s~~G~r~~neD~~~~~~~~-----~~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 81 (286)
.+|+.+..|.|.+|||++++..++ ..+..+|+|||||||..+++++++.++..+.+...... ..++.++|
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~-----~~~~~~al 75 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFND-----GNDIEEAL 75 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHT-----CHHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhccccc-----ccchhhcc
Confidence 478999999999999999998744 26789999999999999999999999988888876643 11789999
Q ss_pred HHHHHH-hhHHHHhcCC--CCCCCCCeEEEEEEeCceEEEEEeccceEEEEeCCeEE-EcCCCCCCCChhhhHHHHHHhc
Q 023178 82 AACFLK-MDEEVTGAGR--DASSVGPSALVVMVDEEELVVANRGNSRIVLCRAGVAV-PLSRDHKPDKPDESERVRVEAA 157 (286)
Q Consensus 82 ~~~~~~-~~~~l~~~~~--~~~~~gsT~~~~~i~~~~l~~a~vGDsr~~l~~~g~~~-~lt~dh~~~~~~e~~~~ri~~~ 157 (286)
..+|.+ +++.+....+ ....+|||+++++|.++++|+||+||||+|+++++... +||+||++.++.|+. ||+.+
T Consensus 76 ~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~--RI~~~ 153 (254)
T PF00481_consen 76 RQAFLAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERE--RIRKA 153 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHH--HHHHT
T ss_pred cceeeecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccc--eeecc
Confidence 999999 8888876321 45899999999999999999999999999999999888 999999999999999 99999
Q ss_pred CCeEEeecCceecceeecccccCCCCCCC---CccccCceEEEEEcCCCCeEEEEEcCCCcCCCCHHHHHHHHHHhhhcc
Q 023178 158 GGGITNWYGCRVLGVLTTSASIGDQNLKP---YVVLSKPEVTVNARSELDEFIVIATRGLWDVVSNEFACEVVRRCLTGQ 234 (286)
Q Consensus 158 gg~~~~~~~~~~~~~~~~tr~lG~~~~k~---~~v~~~p~i~~~~l~~~~~~lll~SDGv~d~l~~~ei~~i~~~~~~~~ 234 (286)
||.+.. .+|+.|.+.+||+|||..+|+ ..|+++|++..+++.++++|||||||||||+|+++|+.+++++.....
T Consensus 154 gg~v~~--~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~ 231 (254)
T PF00481_consen 154 GGRVSE--NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSG 231 (254)
T ss_dssp T-GEEE--TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHH
T ss_pred cccccc--chhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcC
Confidence 999886 689999999999999999998 566999999999999988899999999999999999999999864321
Q ss_pred ccccCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCc
Q 023178 235 LRLRFPEECSGSGPSGAAEAATMLAELALARGSKHNI 271 (286)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DNi 271 (286)
.++..+|+.|++.|+++|+.|||
T Consensus 232 --------------~~~~~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 232 --------------RSPQEAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp --------------SHHHHHHHHHHHHHHHTTHHSHE
T ss_pred --------------CcHHHHHHHHHHHHHhcCCCCCC
Confidence 35899999999999999999996
No 6
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-45 Score=315.80 Aligned_cols=243 Identities=28% Similarity=0.400 Sum_probs=204.7
Q ss_pred CCeeeEEeecccC-CCCCCceeEeeccCCCC-eeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC--HHH
Q 023178 4 GSLSHGFISVIGR-RRVMEDAVTVAIGGIDS-YDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKREGCGGG--WED 79 (286)
Q Consensus 4 ~~~~~~~~s~~G~-r~~neD~~~~~~~~~~~-~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~--~~~ 79 (286)
..+.++..++.|. |..|||++++......+ ..+++|||||||+++|++|++.+++.|.+.+.... ..... +.+
T Consensus 6 ~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~---~~~~~~~~~~ 82 (262)
T COG0631 6 LSLKVAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEALARLFDETN---FNSLNESLEE 82 (262)
T ss_pred ceeeeeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhcc---ccccchhHHH
Confidence 4566777777777 66799999997642211 56999999999999999999999999999987753 11111 789
Q ss_pred HHHHHHHHhhHHHHhcCC---CCCCCCCeEEEEEEeCceEEEEEeccceEEEEeCCeEEEcCCCCCCCChhhhHHHHHHh
Q 023178 80 LMAACFLKMDEEVTGAGR---DASSVGPSALVVMVDEEELVVANRGNSRIVLCRAGVAVPLSRDHKPDKPDESERVRVEA 156 (286)
Q Consensus 80 ~l~~~~~~~~~~l~~~~~---~~~~~gsT~~~~~i~~~~l~~a~vGDsr~~l~~~g~~~~lt~dh~~~~~~e~~~~ri~~ 156 (286)
.|.+++..+++.+..... ....||||++++++.++++|+|||||||+|++|+|.+++||.||++.+..++. ++..
T Consensus 83 ~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~--~~~~ 160 (262)
T COG0631 83 LLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQR--GIIT 160 (262)
T ss_pred HHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHh--cCCC
Confidence 999999999999998863 66899999999999999999999999999999999999999999999888877 5444
Q ss_pred cCCeEEeecCceecceeecccccCCCCCCCCccccCceEEEEEcCCCCeEEEEEcCCCcCCCCHHHHHHHHHHhhhcccc
Q 023178 157 AGGGITNWYGCRVLGVLTTSASIGDQNLKPYVVLSKPEVTVNARSELDEFIVIATRGLWDVVSNEFACEVVRRCLTGQLR 236 (286)
Q Consensus 157 ~gg~~~~~~~~~~~~~~~~tr~lG~~~~k~~~v~~~p~i~~~~l~~~~~~lll~SDGv~d~l~~~ei~~i~~~~~~~~~~ 236 (286)
.++.... +.+ ..+||+||+... + .|++...++.++ +|+|||||||||.++++++.+++..
T Consensus 161 ~~~~~~~--~~~----~~ltralG~~~~---~---~p~~~~~~~~~~-d~llL~SDGl~d~v~~~~i~~il~~------- 220 (262)
T COG0631 161 PEEARSH--PRR----NALTRALGDFDL---L---EPDITELELEPG-DFLLLCSDGLWDVVSDDEIVDILKN------- 220 (262)
T ss_pred HHHHHhC--ccc----hhhhhhcCCCcc---c---ceeEEEEEcCCC-CEEEEECCCCccCcCHHHHHHHHhc-------
Confidence 4333222 111 279999998543 3 899999999994 8999999999999999999999996
Q ss_pred ccCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCC
Q 023178 237 LRFPEECSGSGPSGAAEAATMLAELALARGSKHNISVIVVELKKSS 282 (286)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~~ 282 (286)
..+++.+++.|++.|+++++.||+|+++|++..+.
T Consensus 221 -----------~~~~~~~~~~li~~a~~~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 221 -----------SETPQEAADKLIELALEGGGPDNITVVLVRLNGEG 255 (262)
T ss_pred -----------CCCHHHHHHHHHHHHHhcCCCCceEEEEEEeeccc
Confidence 48999999999999999999999999999998664
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-42 Score=297.05 Aligned_cols=252 Identities=32% Similarity=0.501 Sum_probs=226.1
Q ss_pred CeeeEEeecccCCCCCCceeEeeccCCCCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 023178 5 SLSHGFISVIGRRRVMEDAVTVAIGGIDSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKREGCGGGWEDLMAAC 84 (286)
Q Consensus 5 ~~~~~~~s~~G~r~~neD~~~~~~~~~~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 84 (286)
.+.||+.+++|||..+||+.-....+..++.+|+|+|||||.++++|++..++++|.+.- .+...++..+|++|
T Consensus 21 lL~yg~s~MQGWRvsqEDAHNci~~ld~~t~mF~VYDGHGG~EVa~yca~kLPdflK~~k------~yk~g~~~~aL~~A 94 (542)
T KOG0699|consen 21 LLSYGCSTMQGWRVSQEDAHNCIVDLDTDTHMFGVYDGHGGTEVAKYCAAKLPDFLKERK------FYKAGDVAEALQKA 94 (542)
T ss_pred cchhchhhhhccccchhhhhcccccccCcceEEEEecCCCcHHHHHHHHHhhhHHHHhHH------hhhcccHHHHHHHH
Confidence 578999999999999999998888888999999999999999999999999999998764 33567888999999
Q ss_pred HHHhhHHHHhcC--------------------------------------------------------------------
Q 023178 85 FLKMDEEVTGAG-------------------------------------------------------------------- 96 (286)
Q Consensus 85 ~~~~~~~l~~~~-------------------------------------------------------------------- 96 (286)
|...+..|....
T Consensus 95 Fl~fD~~l~~ee~~keLk~iag~~~~k~~~aeaDd~deed~a~l~EEa~~pl~ElL~rY~G~~~hK~~~sp~~~~g~~s~ 174 (542)
T KOG0699|consen 95 FLDFDDFLRAEESMKELKDIAGEGKPKKAGAEADDEDEEDRADLIEEASVPLAELLKRYGGAGVHKSLLSPFLAKGDVSD 174 (542)
T ss_pred HhchhhhhcCHHHHHHHHHHcCCCCcccccccccccchHHHHHHHHhccCcHHHHHHHhcCCCccccccChhhhccCCcc
Confidence 988887776553
Q ss_pred --------------------------------------------------------------------------------
Q 023178 97 -------------------------------------------------------------------------------- 96 (286)
Q Consensus 97 -------------------------------------------------------------------------------- 96 (286)
T Consensus 175 e~~~~~~~~~eA~p~dst~~~ps~~~~p~A~A~~~~~s~~d~~te~g~~k~~g~~~g~~g~~~~S~s~Kl~q~sKsef~f 254 (542)
T KOG0699|consen 175 ESEDEDEDEEEAEPQDSTEREPSENEDPMASAEVVIESAEDKETEEGSPKKKGQKRGQKGHPIQSESKKLNQSSKSEFDF 254 (542)
T ss_pred CCCcccccccccCCCCccccCcccccCCcccceeccccccccccccCCCCCCCcccccCCCcchhhhhhccccccccccc
Confidence
Q ss_pred ----------------------------------------------------------------------CCCCCCCCeE
Q 023178 97 ----------------------------------------------------------------------RDASSVGPSA 106 (286)
Q Consensus 97 ----------------------------------------------------------------------~~~~~~gsT~ 106 (286)
.....+|||+
T Consensus 255 E~~~sS~d~~D~a~~EEeD~~k~~d~sd~~sse~~eneed~Ded~e~e~ddEE~~e~~map~~~~~~g~EePG~DSGtTA 334 (542)
T KOG0699|consen 255 ETAPSSSDGVDGAATEEEDEVKSPDDSDAESSEFVENEEDDDEDAEDEQDDEEMVEGSMAPLLLGSGGAEEPGEDSGTTA 334 (542)
T ss_pred ccCCCcccccccccccccccccCCcccccccchhcccccccccccccccchhhhhhhcccccccccccCcCCCCCCCceE
Confidence 1556799999
Q ss_pred EEEEEeCceEEEEEeccceEEEEeCCeEEEcCCCCCCCChhhhHHHHHHhcCCeEEeecCceecceeecccccCCCCCCC
Q 023178 107 LVVMVDEEELVVANRGNSRIVLCRAGVAVPLSRDHKPDKPDESERVRVEAAGGGITNWYGCRVLGVLTTSASIGDQNLKP 186 (286)
Q Consensus 107 ~~~~i~~~~l~~a~vGDsr~~l~~~g~~~~lt~dh~~~~~~e~~~~ri~~~gg~~~~~~~~~~~~~~~~tr~lG~~~~k~ 186 (286)
+||++.+++||+||.||||++++|+|+.+.++.||.|....|.. ||..+||.+.. ..|++|.|.++|+|||..||.
T Consensus 335 vVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~--RI~~AGG~vtl--DGRVNGGLNLSRA~GDHaYK~ 410 (542)
T KOG0699|consen 335 VVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETN--RIHAAGGQVTL--DGRVNGGLNLSRAFGDHAYKK 410 (542)
T ss_pred EEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHH--HHHhcCCeEee--cceecCccchhhhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999 99999999985 489999999999999999985
Q ss_pred C--------ccccCceEEEEEcCCCCeEEEEEcCCCcCCCCHHHHHHHHHHhhhccccccCCCCCCCCCCCcHHHHHHHH
Q 023178 187 Y--------VVLSKPEVTVNARSELDEFIVIATRGLWDVVSNEFACEVVRRCLTGQLRLRFPEECSGSGPSGAAEAATML 258 (286)
Q Consensus 187 ~--------~v~~~p~i~~~~l~~~~~~lll~SDGv~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l 258 (286)
. .|++-|+|+...|++.++|+|+++||||++|+.++++++++..+.+ .....++|+.|
T Consensus 411 N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~--------------n~~ls~iceeL 476 (542)
T KOG0699|consen 411 NQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAK--------------NSSLSEICEEL 476 (542)
T ss_pred ccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhc--------------CchHHHHHHHH
Confidence 3 3699999999999999999999999999999999999999986553 36778999999
Q ss_pred HHHHHHcC------CCCCcEEEEEEeCC
Q 023178 259 AELALARG------SKHNISVIVVELKK 280 (286)
Q Consensus 259 ~~~a~~~g------~~DNiTvivv~~~~ 280 (286)
++++++.. ..||+|+|++.|++
T Consensus 477 ~D~CLAp~T~GDGTGCDNMT~ii~~Fkr 504 (542)
T KOG0699|consen 477 CDACLAPSTDGDGTGCDNMTVIITTFKR 504 (542)
T ss_pred HHhhcCCCCCCCCcCCCcceEEEEEecc
Confidence 99998742 68999999999974
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=4e-41 Score=289.71 Aligned_cols=250 Identities=40% Similarity=0.617 Sum_probs=214.3
Q ss_pred eeeEEeecccCCCCCCceeEeeccCC-CCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHH
Q 023178 6 LSHGFISVIGRRRVMEDAVTVAIGGI-DSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKREGCGGGWEDLMAAC 84 (286)
Q Consensus 6 ~~~~~~s~~G~r~~neD~~~~~~~~~-~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 84 (286)
+.+++.+..|.|..|||++++..... .++.+++|||||||+..++++++.+++.+.+.+.... ......+...|+++
T Consensus 1 ~~~~~~~~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~ 78 (254)
T cd00143 1 FSAGVSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETL--TLSEEDIEEALRKA 78 (254)
T ss_pred CceeeecCCCCCCCCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhcc--ccchHHHHHHHHHH
Confidence 46788899999999999999976521 1678999999999999999999999999999886532 12356778899999
Q ss_pred HHHhhHHHHhcCC---CCCCCCCeEEEEEEeCceEEEEEeccceEEEEeCCeEEEcCCCCCCCChhhhHHHHHHhcCCeE
Q 023178 85 FLKMDEEVTGAGR---DASSVGPSALVVMVDEEELVVANRGNSRIVLCRAGVAVPLSRDHKPDKPDESERVRVEAAGGGI 161 (286)
Q Consensus 85 ~~~~~~~l~~~~~---~~~~~gsT~~~~~i~~~~l~~a~vGDsr~~l~~~g~~~~lt~dh~~~~~~e~~~~ri~~~gg~~ 161 (286)
|..+++.+..... ....+|||++++++.++.++++|+||||+|++++++++++|.||++.++.+.. |+...++.+
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~--~i~~~~~~~ 156 (254)
T cd00143 79 FLRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERE--RIEKAGGRV 156 (254)
T ss_pred HHHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHH--HHHHcCCcE
Confidence 9999999987763 45789999999999999999999999999999999999999999999877777 888888865
Q ss_pred EeecCceecceeecccccCCCCCCCCccccCceEEEEEcCCCCeEEEEEcCCCcCCCCHHHHHHHHHHhhhccccccCCC
Q 023178 162 TNWYGCRVLGVLTTSASIGDQNLKPYVVLSKPEVTVNARSELDEFIVIATRGLWDVVSNEFACEVVRRCLTGQLRLRFPE 241 (286)
Q Consensus 162 ~~~~~~~~~~~~~~tr~lG~~~~k~~~v~~~p~i~~~~l~~~~~~lll~SDGv~d~l~~~ei~~i~~~~~~~~~~~~~~~ 241 (286)
. ..+..+...+||++|+..+|+.. .++|++...++.+.+++|||||||||++++++++.+++.+...
T Consensus 157 ~---~~~~~~~~~~t~~lG~~~~~~~~-~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~--------- 223 (254)
T cd00143 157 S---NGRVPGVLAVTRALGDFDLKPGV-SAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELA--------- 223 (254)
T ss_pred E---eCEEcCceeeccccCCccccCCE-EcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhc---------
Confidence 4 24555667899999998888666 7899999999944488899999999999999999999998310
Q ss_pred CCCCCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEEe
Q 023178 242 ECSGSGPSGAAEAATMLAELALARGSKHNISVIVVEL 278 (286)
Q Consensus 242 ~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~ 278 (286)
..+++++|+.|++.|..+++.||+|+|++++
T Consensus 224 ------~~~~~~~a~~l~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 224 ------KEDLQEAAQELVDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred ------ccCHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence 0278999999999999999999999999875
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=2.7e-40 Score=285.04 Aligned_cols=250 Identities=45% Similarity=0.660 Sum_probs=214.2
Q ss_pred cCCeeeEEeecccCCCCCCceeEeeccCCCCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHH
Q 023178 3 FGSLSHGFISVIGRRRVMEDAVTVAIGGIDSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKREGCGGGWEDLMA 82 (286)
Q Consensus 3 ~~~~~~~~~s~~G~r~~neD~~~~~~~~~~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 82 (286)
...+.+++.+..|.|..|||++++......+..+++|||||||..+++++++.+.+.+.+...... .....+.+.|+
T Consensus 3 ~~~~~~~~~~~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~ 79 (255)
T smart00332 3 NLGLRYGLSSMQGVRKPMEDAHVITPDLSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHK---DELEDVEEALR 79 (255)
T ss_pred CCceeEEEecCCCCCCCCcceEEEeccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcc---cchhHHHHHHH
Confidence 346888998888999999999998765446788999999999999999999999988877654321 11135888999
Q ss_pred HHHHHhhHHHHhcCC---CCCCCCCeEEEEEEeCceEEEEEeccceEEEEeCCeEEEcCCCCCCCChhhhHHHHHHhcCC
Q 023178 83 ACFLKMDEEVTGAGR---DASSVGPSALVVMVDEEELVVANRGNSRIVLCRAGVAVPLSRDHKPDKPDESERVRVEAAGG 159 (286)
Q Consensus 83 ~~~~~~~~~l~~~~~---~~~~~gsT~~~~~i~~~~l~~a~vGDsr~~l~~~g~~~~lt~dh~~~~~~e~~~~ri~~~gg 159 (286)
+++.++++.+..... ....+|||++++++.++++|++|+||||+|+++++++.++|.||++.+..|.. ++...++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~--~i~~~~~ 157 (255)
T smart00332 80 KAFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERA--RIEAAGG 157 (255)
T ss_pred HHHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHH--HHHHcCC
Confidence 999999999987764 23579999999999999999999999999999999999999999999988888 8999888
Q ss_pred eEEeecCceecceeecccccCCCCCCCCccccCceEEEEEcCCCCeEEEEEcCCCcCCCCHHHHHHHHHHhhhccccccC
Q 023178 160 GITNWYGCRVLGVLTTSASIGDQNLKPYVVLSKPEVTVNARSELDEFIVIATRGLWDVVSNEFACEVVRRCLTGQLRLRF 239 (286)
Q Consensus 160 ~~~~~~~~~~~~~~~~tr~lG~~~~k~~~v~~~p~i~~~~l~~~~~~lll~SDGv~d~l~~~ei~~i~~~~~~~~~~~~~ 239 (286)
.+.. ++..+...+||++|+..+||.+ +++|++...++.+.+++|||||||||++++++++.+++.+...
T Consensus 158 ~~~~---~~~~~~~~lt~~~g~~~~~~~i-~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~------- 226 (255)
T smart00332 158 FVIN---GRVNGVLALSRAIGDFFLKPYV-SAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLS------- 226 (255)
T ss_pred EEEC---CeECCeEecccccCCHhhcCCe-EeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhh-------
Confidence 7754 4667778999999998888888 8999999999744488899999999999999999999987421
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEE
Q 023178 240 PEECSGSGPSGAAEAATMLAELALARGSKHNISVIVV 276 (286)
Q Consensus 240 ~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv 276 (286)
..++.++|+.|++.|..++..||+|+||+
T Consensus 227 --------~~~~~~~~~~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 227 --------KSDPEEAAKRLIDLALARGSKDNITVIVV 255 (255)
T ss_pred --------cCCHHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 02689999999999999999999999985
No 10
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=1.8e-40 Score=313.17 Aligned_cols=246 Identities=17% Similarity=0.249 Sum_probs=188.1
Q ss_pred CeeeEEeecccC-CCCCCceeEeeccC------C----CCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 023178 5 SLSHGFISVIGR-RRVMEDAVTVAIGG------I----DSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKREGC 73 (286)
Q Consensus 5 ~~~~~~~s~~G~-r~~neD~~~~~~~~------~----~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~~~~ 73 (286)
.+.++..|+.|. |+.|||++.+.... . ....+|+|||||||+.+|++||+.+++.+.+.+.... ..
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~---~~ 450 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHW---QD 450 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhh---cc
Confidence 578899999997 78899998775421 0 1356899999999999999999999999988776432 11
Q ss_pred CCCHHHHHHHHHHHhhHHHHhcCC-----CCCCCCCeEEEEEEeCceEEEEEeccceEEEEe-CCeEEEcCCCCCCCChh
Q 023178 74 GGGWEDLMAACFLKMDEEVTGAGR-----DASSVGPSALVVMVDEEELVVANRGNSRIVLCR-AGVAVPLSRDHKPDKPD 147 (286)
Q Consensus 74 ~~~~~~~l~~~~~~~~~~l~~~~~-----~~~~~gsT~~~~~i~~~~l~~a~vGDsr~~l~~-~g~~~~lt~dh~~~~~~ 147 (286)
.....+.|++++..+++.+..... ....||||++++++.++++|++|+||||+|+++ +|++++||+||++.+..
T Consensus 451 ~~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~l 530 (645)
T PRK14559 451 ELPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQRE 530 (645)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHHH
Confidence 123467899999999999976542 334799999999999999999999999999984 78999999999987532
Q ss_pred hhHHHHHHhcCCeEEeecCceecceeecccccCCCCCCCCccccCceEEEEEcCCCCeEEEEEcCCCcCC--CCH---HH
Q 023178 148 ESERVRVEAAGGGITNWYGCRVLGVLTTSASIGDQNLKPYVVLSKPEVTVNARSELDEFIVIATRGLWDV--VSN---EF 222 (286)
Q Consensus 148 e~~~~ri~~~gg~~~~~~~~~~~~~~~~tr~lG~~~~k~~~v~~~p~i~~~~l~~~~~~lll~SDGv~d~--l~~---~e 222 (286)
.+. | +.........+...+||+||+...+ ..+|++..+++.+ +++||||||||||+ ++. ++
T Consensus 531 v~~-------G--i~~~~a~~~p~~~~LTrALG~~~~~----~l~Pdi~~~~L~~-gD~lLLCSDGL~D~~~ve~~~~~~ 596 (645)
T PRK14559 531 IQR-------G--VEPQIAYARPDAYQLTQALGPRDNS----AIQPDIQFLEIEE-DTLLLLCSDGLSDNDLLETHWQTH 596 (645)
T ss_pred HHh-------C--CCHHHHhcCcccceeeeccCCCCCC----cccceEEEEEcCC-CCEEEEECCCCCCCcccchHHHHH
Confidence 222 2 1111111112345799999985432 2389999999987 78889999999994 443 23
Q ss_pred HHHHHHHhhhccccccCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCCCCC
Q 023178 223 ACEVVRRCLTGQLRLRFPEECSGSGPSGAAEAATMLAELALARGSKHNISVIVVELKKSSTIV 285 (286)
Q Consensus 223 i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~~~~~ 285 (286)
+..++.. ..++.++++.|++.|+.+|+.||+|+|||++...+.+.
T Consensus 597 l~~il~~------------------~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~~~p~~~ 641 (645)
T PRK14559 597 LLPLLSS------------------SANLDQGLNKLIDLANQYNGHDNITAILVRLKVRPQLS 641 (645)
T ss_pred HHHHHhc------------------CCCHHHHHHHHHHHHHHcCCCCcEEEEEEEeccCCCCC
Confidence 3344443 36789999999999999999999999999998877653
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-41 Score=292.74 Aligned_cols=234 Identities=33% Similarity=0.497 Sum_probs=196.3
Q ss_pred CCCCceeEeeccCCCCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhc------CC-------------------
Q 023178 18 RVMEDAVTVAIGGIDSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKR------EG------------------- 72 (286)
Q Consensus 18 ~~neD~~~~~~~~~~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~------~~------------------- 72 (286)
+.-||++-+.....+++.|+||+|||||.+++++.++++...+..++...... ..
T Consensus 83 ~~~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~ 162 (390)
T KOG0700|consen 83 KAEEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSA 162 (390)
T ss_pred CcccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhccccc
Confidence 34577777666656899999999999999999999999999998666552200 00
Q ss_pred -C-CCCHHHHHHHHHHHhhHHHHhcCC-------CCCCCCCeEEEEEEeCceEEEEEeccceEEEEe---CC---eEEEc
Q 023178 73 -C-GGGWEDLMAACFLKMDEEVTGAGR-------DASSVGPSALVVMVDEEELVVANRGNSRIVLCR---AG---VAVPL 137 (286)
Q Consensus 73 -~-~~~~~~~l~~~~~~~~~~l~~~~~-------~~~~~gsT~~~~~i~~~~l~~a~vGDsr~~l~~---~g---~~~~l 137 (286)
. ...+.++|.+||.++++.+..... ....+||||+++++.+..||+||+|||||+|.+ +| ..+||
T Consensus 163 ~~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qL 242 (390)
T KOG0700|consen 163 DQRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQL 242 (390)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEec
Confidence 1 466889999999999999965442 667899999999999999999999999999975 23 67999
Q ss_pred CCCCCCCChhhhHHHHHHhcCC-eEEeecCceecceeecccccCCCCCC---------------------CCccccCceE
Q 023178 138 SRDHKPDKPDESERVRVEAAGG-GITNWYGCRVLGVLTTSASIGDQNLK---------------------PYVVLSKPEV 195 (286)
Q Consensus 138 t~dh~~~~~~e~~~~ri~~~gg-~~~~~~~~~~~~~~~~tr~lG~~~~k---------------------~~~v~~~p~i 195 (286)
|.||+..++.|+.|+|.+++.. .+..+..+|++|.+.+||+|||..+| ||+ +++|++
T Consensus 243 S~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~Pyl-taeP~i 321 (390)
T KOG0700|consen 243 STDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYL-TAEPSI 321 (390)
T ss_pred ChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCce-eccceE
Confidence 9999999999999999999954 55556668999999999999999888 566 999999
Q ss_pred EEEEcCCCCeEEEEEcCCCcCCCCHHHHHHHHHHhhhccccccCCCCCCCCCCCcHHHHHHHHHHHHHHcC
Q 023178 196 TVNARSELDEFIVIATRGLWDVVSNEFACEVVRRCLTGQLRLRFPEECSGSGPSGAAEAATMLAELALARG 266 (286)
Q Consensus 196 ~~~~l~~~~~~lll~SDGv~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~a~~~g 266 (286)
+.++|.+.|.||||+|||+||+|+++|++.++.+++... .+-+.+|+.|++.|+.+.
T Consensus 322 ~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~--------------~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 322 THHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGK--------------FPDGNPATHLIRHALGRA 378 (390)
T ss_pred EEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccC--------------CCCCCHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999975421 234568899999987643
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.96 E-value=5.7e-28 Score=204.89 Aligned_cols=235 Identities=32% Similarity=0.468 Sum_probs=182.1
Q ss_pred CCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhc-------------------C--------CCCC------CHH
Q 023178 32 DSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKR-------------------E--------GCGG------GWE 78 (286)
Q Consensus 32 ~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~-------------------~--------~~~~------~~~ 78 (286)
.++.+|.+||||.|..++-+|++.+.+.+.+.+...-.. . +.+. =+.
T Consensus 142 ~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LVi 221 (493)
T KOG1323|consen 142 ADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVI 221 (493)
T ss_pred CcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhH
Confidence 467899999999999999999999999888877633200 0 0001 134
Q ss_pred HHHHHHHHHhhHHHHhcCC-CCCCCCCeEEEEEEeCceEEEEEeccceEEEEeCCeEEEcCCCCCCCChhhhHHHHHHhc
Q 023178 79 DLMAACFLKMDEEVTGAGR-DASSVGPSALVVMVDEEELVVANRGNSRIVLCRAGVAVPLSRDHKPDKPDESERVRVEAA 157 (286)
Q Consensus 79 ~~l~~~~~~~~~~l~~~~~-~~~~~gsT~~~~~i~~~~l~~a~vGDsr~~l~~~g~~~~lt~dh~~~~~~e~~~~ri~~~ 157 (286)
-+|+.||+.++++|.+... -...+|||+++++.--+++|+||.|||||+++|++++++++++-+|. .|++ |++..
T Consensus 222 GAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPe--tERq--RlQ~L 297 (493)
T KOG1323|consen 222 GALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPE--TERQ--RLQEL 297 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcH--HHHH--HHHHH
Confidence 5899999999999998875 56678999999999999999999999999999999999999999986 5666 54443
Q ss_pred --------CCeEEe--------------------------------------------ecCceecceeecccccCCCCCC
Q 023178 158 --------GGGITN--------------------------------------------WYGCRVLGVLTTSASIGDQNLK 185 (286)
Q Consensus 158 --------gg~~~~--------------------------------------------~~~~~~~~~~~~tr~lG~~~~k 185 (286)
|++..+ -...|+.+.+.+||.|||..+|
T Consensus 298 af~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lk 377 (493)
T KOG1323|consen 298 AFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLK 377 (493)
T ss_pred hhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceee
Confidence 333332 1114456779999999998664
Q ss_pred ---------CCccccCceEEEEEcCC----CCeEEEEEcCCCcCCCCHHHHHHHHHHhhhccccccCCCCCCCCCCCcHH
Q 023178 186 ---------PYVVLSKPEVTVNARSE----LDEFIVIATRGLWDVVSNEFACEVVRRCLTGQLRLRFPEECSGSGPSGAA 252 (286)
Q Consensus 186 ---------~~~v~~~p~i~~~~l~~----~~~~lll~SDGv~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (286)
|.+ ++.|+++++++.+ .|+.+||+|||+||+++++|+..++++.+... ....+.-..
T Consensus 378 v~dsnl~iKPFL-ssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~---------dp~Dp~RYt 447 (493)
T KOG1323|consen 378 VVDSNLSIKPFL-SSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPST---------DPADPSRYT 447 (493)
T ss_pred eecCCcccchhh-hcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCC---------CCCChhHHH
Confidence 777 9999999999863 47899999999999999999999999865432 001122335
Q ss_pred HHHHHHHHHHHH-------------cCCCCCcEEEEEEeCC
Q 023178 253 EAATMLAELALA-------------RGSKHNISVIVVELKK 280 (286)
Q Consensus 253 ~~a~~l~~~a~~-------------~g~~DNiTvivv~~~~ 280 (286)
.+|+.++-.|.. -|+-||||+.||-+..
T Consensus 448 ~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~~ 488 (493)
T KOG1323|consen 448 QAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLKY 488 (493)
T ss_pred HHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEeccC
Confidence 688888888753 2478999999997754
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=5.5e-25 Score=186.53 Aligned_cols=213 Identities=19% Similarity=0.199 Sum_probs=154.3
Q ss_pred CCceeEeeccCCCCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhh-hcCCCCCCHHHHHHHHHHHhhHHHHhcCCC
Q 023178 20 MEDAVTVAIGGIDSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERR-KREGCGGGWEDLMAACFLKMDEEVTGAGRD 98 (286)
Q Consensus 20 neD~~~~~~~~~~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 98 (286)
-||+|++..+ .+..+.|||||+|||.--.+-...+.+.|-+...+.. ...+...++...|.+++.++-++ . .
T Consensus 91 GEDa~Fvss~--~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~~----~-~ 163 (330)
T KOG1379|consen 91 GEDAWFVSSN--PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKSQ----K-V 163 (330)
T ss_pred CCcceeeccC--cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhhc----C-C
Confidence 6999999887 7789999999999987655554444444444444433 23556668999999988776433 1 3
Q ss_pred CCCCCCeEEEEEEe--CceEEEEEeccceEEEEeCCeEEEcCCCCCCCChhhhHHHHHHhcCCeEEeecCceecceeecc
Q 023178 99 ASSVGPSALVVMVD--EEELVVANRGNSRIVLCRAGVAVPLSRDHKPDKPDESERVRVEAAGGGITNWYGCRVLGVLTTS 176 (286)
Q Consensus 99 ~~~~gsT~~~~~i~--~~~l~~a~vGDsr~~l~~~g~~~~lt~dh~~~~~~e~~~~ri~~~gg~~~~~~~~~~~~~~~~t 176 (286)
..-++||++++.++ +++||+||+|||-..++|+|+++..|..|....+.-.+ +. . +.-...
T Consensus 164 ~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQ----------Ls------~-~p~~~~ 226 (330)
T KOG1379|consen 164 PIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHYFNTPYQ----------LS------S-PPEGYS 226 (330)
T ss_pred CCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheeccCCcee----------ec------c-CCcccc
Confidence 45578888888887 88999999999999999999999999877654322211 00 0 000002
Q ss_pred cccCCCCCCCCccccCceEEEEEcCCCCeEEEEEcCCCcCCCCHHHHHHHHHHhhhccccccCCCCCCCCCCCcHHHHHH
Q 023178 177 ASIGDQNLKPYVVLSKPEVTVNARSELDEFIVIATRGLWDVVSNEFACEVVRRCLTGQLRLRFPEECSGSGPSGAAEAAT 256 (286)
Q Consensus 177 r~lG~~~~k~~~v~~~p~i~~~~l~~~~~~lll~SDGv~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 256 (286)
.+++| +| ...+.+++++.+ +|.||++||||||+|.+++|.+++...... ...+++..|+
T Consensus 227 ~~~~d---~p----~~ad~~~~~v~~-GDvIilATDGlfDNl~e~~Il~il~~~~~~-------------~~~~lq~~A~ 285 (330)
T KOG1379|consen 227 SYISD---VP----DSADVTSFDVQK-GDVIILATDGLFDNLPEKEILSILKGLDAR-------------GNLDLQVTAQ 285 (330)
T ss_pred ccccC---Cc----cccceEEEeccC-CCEEEEecccccccccHHHHHHHHHHhhcc-------------ccccHHHHHH
Confidence 22333 22 245678889888 778899999999999999999999874321 2478899999
Q ss_pred HHHHHHHH-----------------------cCCCCCcEEEEEE
Q 023178 257 MLAELALA-----------------------RGSKHNISVIVVE 277 (286)
Q Consensus 257 ~l~~~a~~-----------------------~g~~DNiTvivv~ 277 (286)
+|++.|.. .|..||||+||..
T Consensus 286 ~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 286 KIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred HHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 99999863 2469999999875
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=6.4e-25 Score=208.07 Aligned_cols=246 Identities=27% Similarity=0.404 Sum_probs=214.2
Q ss_pred CeeeEEeecccCCCCCCceeEeeccCC-CCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHH
Q 023178 5 SLSHGFISVIGRRRVMEDAVTVAIGGI-DSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKREGCGGGWEDLMAA 83 (286)
Q Consensus 5 ~~~~~~~s~~G~r~~neD~~~~~~~~~-~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 83 (286)
-|++|++...|+|.++.-+.....++. +....|+++||-+......+...++...+.++..... +-.+.|+.
T Consensus 521 ~~t~Gv~~~~gqrnk~c~~~~~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~-------~et~~mr~ 593 (1081)
T KOG0618|consen 521 LWTYGVAGVSGQRNKVCSRAVWVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYG-------NETEQMRN 593 (1081)
T ss_pred heeeccchhcccccchhhhhhhhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhcc-------ChHHHHHH
Confidence 578999999999999877755544433 6778999999999999999999999999999987632 33444999
Q ss_pred HHHHhhHHHHhcCCCCCCCCCeEEEEEEeCc--------eEEEEEeccceEEEEeCCeEEEcCCCCCC-CChhhhHHHHH
Q 023178 84 CFLKMDEEVTGAGRDASSVGPSALVVMVDEE--------ELVVANRGNSRIVLCRAGVAVPLSRDHKP-DKPDESERVRV 154 (286)
Q Consensus 84 ~~~~~~~~l~~~~~~~~~~gsT~~~~~i~~~--------~l~~a~vGDsr~~l~~~g~~~~lt~dh~~-~~~~e~~~~ri 154 (286)
+|...++++...+ ...|..++.|.|..+ ++.+||+|+|.++++++|+..++|+-... .+++|.. ||
T Consensus 594 ~fl~~~rklg~~g---~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~--RI 668 (1081)
T KOG0618|consen 594 TFLRLNRKLGEEG---QVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYK--RI 668 (1081)
T ss_pred HHHHHhhhhhhhh---ccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHH--HH
Confidence 9999999997766 666777777777543 78999999999999999999999877644 4788888 99
Q ss_pred HhcCCeEEeecCceecceeecccccCCCCCCCCccccCceEEEEEcCCCCeEEEEEcCCCcCCCCHHHHHHHHHHhhhcc
Q 023178 155 EAAGGGITNWYGCRVLGVLTTSASIGDQNLKPYVVLSKPEVTVNARSELDEFIVIATRGLWDVVSNEFACEVVRRCLTGQ 234 (286)
Q Consensus 155 ~~~gg~~~~~~~~~~~~~~~~tr~lG~~~~k~~~v~~~p~i~~~~l~~~~~~lll~SDGv~d~l~~~ei~~i~~~~~~~~ 234 (286)
...+|.+.. +++++|....||++|.+...|.+ .+.|++.+..+++.|+|||+++-++|++|+.+++++++++
T Consensus 669 ~~~~g~i~e--d~k~ngvt~~tR~iG~~~l~P~v-~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn----- 740 (1081)
T KOG0618|consen 669 VDSKGFITE--DNKLNGVTSSTRAIGPFSLFPHV-LPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRN----- 740 (1081)
T ss_pred HHhcCeecC--CCeeeceeeeeeecccccccccc-cCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhc-----
Confidence 999999975 68999999999999999999988 9999999999999999999999999999999999999996
Q ss_pred ccccCCCCCCCCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCCC
Q 023178 235 LRLRFPEECSGSGPSGAAEAATMLAELALARGSKHNISVIVVELKKSST 283 (286)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~a~~l~~~a~~~g~~DNiTvivv~~~~~~~ 283 (286)
..+|..+|++|++.|..+|+.||++++||++....+
T Consensus 741 -------------~~dpL~AAkKL~d~AqSYgc~~nv~vlVv~l~~~~~ 776 (1081)
T KOG0618|consen 741 -------------VEDPLLAAKKLCDLAQSYGCAENVSVLVVRLNHLEE 776 (1081)
T ss_pred -------------CCchHHHHHHHHHHHHhcccccCeeEEEEEeecchh
Confidence 589999999999999999999999999999976543
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.88 E-value=2.4e-22 Score=168.71 Aligned_cols=182 Identities=21% Similarity=0.267 Sum_probs=110.3
Q ss_pred eecccCCCCCCceeEeeccCCCCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC---HHHHHHHHHHH
Q 023178 11 ISVIGRRRVMEDAVTVAIGGIDSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKREGCGGG---WEDLMAACFLK 87 (286)
Q Consensus 11 ~s~~G~r~~neD~~~~~~~~~~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 87 (286)
.++.|.+..|||++.+... ++..+++||||+|+...++.++..+++.+.+.+.... .... ..+.++.+..+
T Consensus 3 ~sh~~~~~~nqD~~~~~~~--~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~ 76 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD--DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLL----SQESPSSIEALIRAIKKE 76 (212)
T ss_dssp ----TTSSS--EEEEEE-T--CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEeeeC--CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcc----cccchHHHHHHHHHHHHH
Confidence 4788999999999997766 6667779999999999999999999999999888743 2111 22233333333
Q ss_pred hhHHH------HhcCCCCCCCCCeEEEEEEeCceEEEEEeccceEEE-EeCCeEEEcCCCCCCCChhhhHHHHHHhcCCe
Q 023178 88 MDEEV------TGAGRDASSVGPSALVVMVDEEELVVANRGNSRIVL-CRAGVAVPLSRDHKPDKPDESERVRVEAAGGG 160 (286)
Q Consensus 88 ~~~~l------~~~~~~~~~~gsT~~~~~i~~~~l~~a~vGDsr~~l-~~~g~~~~lt~dh~~~~~~e~~~~ri~~~gg~ 160 (286)
+...+ .........++||++++++.++.++++|+||||+|+ .++|++..++.+|+. +..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~----~~~---------- 142 (212)
T PF13672_consen 77 ILSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSG----EYP---------- 142 (212)
T ss_dssp HHHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BH----HHH----------
T ss_pred HHHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccc----hhh----------
Confidence 33211 011225678899999999999999999999999965 579999999999962 211
Q ss_pred EEeecCceecceeecccccCCCCCCCCccccCceEEEEEcCCCCeEEEEEcCCCcCCCCHHH-HHHHHHHhh
Q 023178 161 ITNWYGCRVLGVLTTSASIGDQNLKPYVVLSKPEVTVNARSELDEFIVIATRGLWDVVSNEF-ACEVVRRCL 231 (286)
Q Consensus 161 ~~~~~~~~~~~~~~~tr~lG~~~~k~~~v~~~p~i~~~~l~~~~~~lll~SDGv~d~l~~~e-i~~i~~~~~ 231 (286)
..++.+.... | ....++..+++.+ ++.|+|||||||+.+...+ +..++...+
T Consensus 143 -------------~~~~~~~~~~--~---~~~~~~~~~~~~~-~d~ilL~SDG~~~~l~~~~~~~~~l~~~~ 195 (212)
T PF13672_consen 143 -------------NQTRSLTGDD--P---EPDVQYGSIPLEE-GDVILLCSDGVWDNLRSYEDLEQFLKDLW 195 (212)
T ss_dssp -------------HCTTSCCHHC--C---CTETEEEEEE--T-T-EEEEE-HHHHTTS-HHHHHHHH-----
T ss_pred -------------hhhhccCccc--c---ccCCeEEEEEcCC-CCEEEEECcCccccCCCHHHHHHHhhhcc
Confidence 1133333221 1 1234666677666 5667999999999998665 666776643
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.80 E-value=1.2e-17 Score=138.16 Aligned_cols=186 Identities=19% Similarity=0.138 Sum_probs=134.4
Q ss_pred eeeEEeecccCCCCCCceeEeeccCCCCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Q 023178 6 LSHGFISVIGRRRVMEDAVTVAIGGIDSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKREGCGGGWEDLMAACF 85 (286)
Q Consensus 6 ~~~~~~s~~G~r~~neD~~~~~~~~~~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (286)
+.++.....+. ...-|.+.+... .++..+++|+||+|+...|.+++..+...+.+.+.. ... +.+.+
T Consensus 4 ~~~~~~~~p~~-~~~GD~~~~~~~-~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~-------~~~----~~~~l 70 (193)
T smart00331 4 GLIAQYYEDAT-QVGGDFYDVVKL-PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSE-------GIS----LSQIL 70 (193)
T ss_pred eEEEEEEcchH-hcCccEEEEEEe-CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhc-------CCC----HHHHH
Confidence 33444433333 557888877654 145789999999998888889999998888776543 122 44455
Q ss_pred HHhhHHHHhcCCCCCCCCCeEEEEEE--eCceEEEEEeccceEEEEe-CCeEEEcCCCCCCCChhhhHHHHHHhcCCeEE
Q 023178 86 LKMDEEVTGAGRDASSVGPSALVVMV--DEEELVVANRGNSRIVLCR-AGVAVPLSRDHKPDKPDESERVRVEAAGGGIT 162 (286)
Q Consensus 86 ~~~~~~l~~~~~~~~~~gsT~~~~~i--~~~~l~~a~vGDsr~~l~~-~g~~~~lt~dh~~~~~~e~~~~ri~~~gg~~~ 162 (286)
..+++.+.... ...+++|++++++ ..++++++|+||+|+|+++ ++...+++.+
T Consensus 71 ~~~n~~l~~~~--~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~---------------------- 126 (193)
T smart00331 71 ERLNRAIYENG--EDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDD---------------------- 126 (193)
T ss_pred HHHHHHHHhcC--CCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCC----------------------
Confidence 66667766542 3568999999998 5789999999999999999 5655555543
Q ss_pred eecCceecceeecccccCCCCCCCCccccCceEEEEEcCCCCeEEEEEcCCCcCCCCHHHHHHHHHHhhhccccccCCCC
Q 023178 163 NWYGCRVLGVLTTSASIGDQNLKPYVVLSKPEVTVNARSELDEFIVIATRGLWDVVSNEFACEVVRRCLTGQLRLRFPEE 242 (286)
Q Consensus 163 ~~~~~~~~~~~~~tr~lG~~~~k~~~v~~~p~i~~~~l~~~~~~lll~SDGv~d~l~~~ei~~i~~~~~~~~~~~~~~~~ 242 (286)
.++.+|. .+. .+++...+++.+ ++.|+|+|||+||.+.++++.+++.+..
T Consensus 127 ------------~~~~lG~---~~~---~~~~~~~~~l~~-gd~l~l~TDGl~e~~~~~~l~~~l~~~~----------- 176 (193)
T smart00331 127 ------------LGAPLGL---EPD---VEVDVRELTLEP-GDLLLLYTDGLTEARNPERLEELLEELL----------- 176 (193)
T ss_pred ------------CCceeee---CCC---CcceeEEEeeCC-CCEEEEECCCccccCChHHHHHHHHHhc-----------
Confidence 1345564 221 246677788888 5677999999999999999999998842
Q ss_pred CCCCCCCcHHHHHHHHHHHHH
Q 023178 243 CSGSGPSGAAEAATMLAELAL 263 (286)
Q Consensus 243 ~~~~~~~~~~~~a~~l~~~a~ 263 (286)
..++++.++++.+.+.
T Consensus 177 -----~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 177 -----GSPPAEIAQRILEELL 192 (193)
T ss_pred -----CCCHHHHHHHHHHHHh
Confidence 3568888888887653
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.67 E-value=8.5e-15 Score=143.31 Aligned_cols=192 Identities=14% Similarity=0.123 Sum_probs=137.2
Q ss_pred cCCCCCCceeEeeccCCCCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhHHHHh
Q 023178 15 GRRRVMEDAVTVAIGGIDSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKREGCGGGWEDLMAACFLKMDEEVTG 94 (286)
Q Consensus 15 G~r~~neD~~~~~~~~~~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 94 (286)
+.+..+.|.+.+... .++...++|+||+|....|..++..+.+.+.+.... ..++ ..++..+|+.+..
T Consensus 562 ~g~~vsGD~y~~~~l-~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~-------g~~~----~~ai~~lN~~L~~ 629 (764)
T TIGR02865 562 DGELVSGDSYSFGKL-SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLES-------GFDR----EVAIKTVNSILSL 629 (764)
T ss_pred CCCcccCceEEEEEE-CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHc-------CCCH----HHHHHHHHHHHHh
Confidence 445679999988653 245678999999996666667777777777665543 1222 4455666666654
Q ss_pred cCCCCCCCCCeEEEEEEe--CceEEEEEeccceEEEEeCCeEEEcCCCCCCCChhhhHHHHHHhcCCeEEeecCceecce
Q 023178 95 AGRDASSVGPSALVVMVD--EEELVVANRGNSRIVLCRAGVAVPLSRDHKPDKPDESERVRVEAAGGGITNWYGCRVLGV 172 (286)
Q Consensus 95 ~~~~~~~~gsT~~~~~i~--~~~l~~a~vGDsr~~l~~~g~~~~lt~dh~~~~~~e~~~~ri~~~gg~~~~~~~~~~~~~ 172 (286)
.. ...+.+|+.+++++ .+++.++++|+++.|+.|++++.+++..+.|
T Consensus 630 ~~--~~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lP----------------------------- 678 (764)
T TIGR02865 630 RS--TDEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLP----------------------------- 678 (764)
T ss_pred CC--CCCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCce-----------------------------
Confidence 33 24578999999985 5789999999999999999988887643221
Q ss_pred eecccccCCCCCCCCccccCceEEEEEcCCCCeEEEEEcCCCcCCCCHHH-----HHHHHHHhhhccccccCCCCCCCCC
Q 023178 173 LTTSASIGDQNLKPYVVLSKPEVTVNARSELDEFIVIATRGLWDVVSNEF-----ACEVVRRCLTGQLRLRFPEECSGSG 247 (286)
Q Consensus 173 ~~~tr~lG~~~~k~~~v~~~p~i~~~~l~~~~~~lll~SDGv~d~l~~~e-----i~~i~~~~~~~~~~~~~~~~~~~~~ 247 (286)
+|-. + ..+++....++.+ +|.|+|+|||++|..++.+ +.+++.+. .
T Consensus 679 ------lGil---~---~~~~~~~~~~L~~-GD~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~----------------~ 729 (764)
T TIGR02865 679 ------IGIL---D---EVDVELVRKKLKN-GDLIVMVSDGVLEGEKEVEGKVLWLVRKLKET----------------N 729 (764)
T ss_pred ------eEec---c---CCccceEEEEeCC-CCEEEEECCCCCcCCcccccHHHHHHHHHHhc----------------C
Confidence 2210 1 1245666778888 6778999999999876543 55555541 2
Q ss_pred CCcHHHHHHHHHHHHHHcC---CCCCcEEEEEEe
Q 023178 248 PSGAAEAATMLAELALARG---SKHNISVIVVEL 278 (286)
Q Consensus 248 ~~~~~~~a~~l~~~a~~~g---~~DNiTvivv~~ 278 (286)
..+|++.++.|++++.... ..||+|++++++
T Consensus 730 ~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 730 TNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 4689999999999998643 489999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.52 E-value=5.1e-12 Score=104.27 Aligned_cols=178 Identities=16% Similarity=0.147 Sum_probs=115.6
Q ss_pred CCeeEEEEecCCCchHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhHHHHhcCCCCCCCCCeEEEEEE
Q 023178 32 DSYDFFAVYDGHGGANTTAACRERLHLIVAQEVKERRKREGCGGGWEDLMAACFLKMDEEVTGAGRDASSVGPSALVVMV 111 (286)
Q Consensus 32 ~~~~l~~V~DG~gG~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~gsT~~~~~i 111 (286)
++..++.|+|+.|..-.|.+.+..+...+....... .+ ....+..+++.+.... ......+|++++.+
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~-------~~----p~~~l~~ln~~l~~~~-~~~~~~~t~~~~~~ 69 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEG-------LD----PEELLEALNRRLYRDL-KGDNRYATACYAII 69 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTT-------TS----HHHHHHHHHHHHHHHT-TTTSTTEEEEEEEE
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcC-------CC----HHHHHHHHHHHHHHHh-hhccccceEEEEEe
Confidence 456789999999955555666666666666665432 12 4444555556664444 22247788888887
Q ss_pred e--CceEEEEEeccceEEEEeCC--eEEEcCCCCCCCChhhhHHHHHHhcCCeEEeecCceecceeecccccCCCCCCCC
Q 023178 112 D--EEELVVANRGNSRIVLCRAG--VAVPLSRDHKPDKPDESERVRVEAAGGGITNWYGCRVLGVLTTSASIGDQNLKPY 187 (286)
Q Consensus 112 ~--~~~l~~a~vGDsr~~l~~~g--~~~~lt~dh~~~~~~e~~~~ri~~~gg~~~~~~~~~~~~~~~~tr~lG~~~~k~~ 187 (286)
+ .++++++|+|++++++++++ ....+..... .+|-. +.
T Consensus 70 d~~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~-----------------------------------~lG~~---~~ 111 (193)
T PF07228_consen 70 DPETGTLTYANAGHPPPLLLRPGGREIEQLESEGP-----------------------------------PLGIF---ED 111 (193)
T ss_dssp ETTTTEEEEEEESSSEEEEEETTCTEEEEETCSSB-----------------------------------BCSSS---CT
T ss_pred cccceEEEEeCCCCCCEEEEeccccceeecccCcc-----------------------------------ceeee---cc
Confidence 5 56899999999999999983 3333322111 13431 11
Q ss_pred ccccCceEEEEEcCCCCeEEEEEcCCCcCCCCHH-------HHHHHHHHhhhccccccCCCCCCCCCCCcHHHHHHHHHH
Q 023178 188 VVLSKPEVTVNARSELDEFIVIATRGLWDVVSNE-------FACEVVRRCLTGQLRLRFPEECSGSGPSGAAEAATMLAE 260 (286)
Q Consensus 188 ~v~~~p~i~~~~l~~~~~~lll~SDGv~d~l~~~-------ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~ 260 (286)
..+....+++.+ ++.|+|+|||++|....+ .+.+.+.+. ...++++.++.+++
T Consensus 112 ---~~~~~~~~~l~~-gd~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~----------------~~~~~~~~~~~l~~ 171 (193)
T PF07228_consen 112 ---IDYQEQEIQLEP-GDRLLLYTDGLFEALNEDGEFFGEERLLELLDEN----------------RGLSPQEIIDALLE 171 (193)
T ss_dssp ---TCEEEEEEE--T-TEEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH----------------TTS-HHHHHHHHHH
T ss_pred ---ccccceEEEecc-ccEEEEeCCChhhccCCccchhHHHHHHHHHhhc----------------cCCCHHHHHHHHHH
Confidence 144556677777 777899999999998433 334555532 24678999999999
Q ss_pred HHHHc---CCCCCcEEEEEEeC
Q 023178 261 LALAR---GSKHNISVIVVELK 279 (286)
Q Consensus 261 ~a~~~---g~~DNiTvivv~~~ 279 (286)
.+... ...||+|+++++++
T Consensus 172 ~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 172 AIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp HHHHHTTSSTSS-EEEEEEEE-
T ss_pred HHHHhcCCCCCCceEEEEEEEC
Confidence 98873 47999999999874
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.61 E-value=1.8e-05 Score=72.01 Aligned_cols=189 Identities=16% Similarity=0.132 Sum_probs=121.7
Q ss_pred CCCceeEeeccCCCCeeEEEEecCCC-chHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhHHHHhcCC
Q 023178 19 VMEDAVTVAIGGIDSYDFFAVYDGHG-GANTTAACRERLHLIVAQEVKERRKREGCGGGWEDLMAACFLKMDEEVTGAGR 97 (286)
Q Consensus 19 ~neD~~~~~~~~~~~~~l~~V~DG~g-G~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 97 (286)
-.-|.|-+.... .....++|.|..| |..++-. ..+.....+.+... ...++.+.|+. +++.+....
T Consensus 161 vGGD~yd~~~~~-~~~~~i~I~DvsG~Gv~aal~--m~~~~~~~~~~~~~-----~~~~p~~~l~~----~n~~~~~~~- 227 (367)
T COG2208 161 VGGDYYDFIQLG-EKRLRIGIGDVSGKGVPAALL--MLMPKLALRLLLES-----GPLDPADVLET----LNRVLKQNL- 227 (367)
T ss_pred cCCceEEEEEEC-CcEEEEEEEeccCCCHHHHHH--HHHHHHHHHHhhhc-----ccCCHHHHHHH----HHHHHHhcc-
Confidence 345666655441 3577889999999 7666555 33344444444321 13445555443 344444333
Q ss_pred CCCCCCCeEEEEEEe--CceEEEEEeccceEEEEeCCeE---EEcCCCCCCCChhhhHHHHHHhcCCeEEeecCceecce
Q 023178 98 DASSVGPSALVVMVD--EEELVVANRGNSRIVLCRAGVA---VPLSRDHKPDKPDESERVRVEAAGGGITNWYGCRVLGV 172 (286)
Q Consensus 98 ~~~~~gsT~~~~~i~--~~~l~~a~vGDsr~~l~~~g~~---~~lt~dh~~~~~~e~~~~ri~~~gg~~~~~~~~~~~~~ 172 (286)
...+-+|+..++++ ...+..+++|---+++.+.+.. ..+.
T Consensus 228 -~~~~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~---------------------------------- 272 (367)
T COG2208 228 -EEDMFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLT---------------------------------- 272 (367)
T ss_pred -cCCcEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEcc----------------------------------
Confidence 22377888888875 5789999999998888886432 2222
Q ss_pred eecccccCCCCCCCCccccCceEEEEEcCCCCeEEEEEcCCCcC-------CCCHHHHHHHHHHhhhccccccCCCCCCC
Q 023178 173 LTTSASIGDQNLKPYVVLSKPEVTVNARSELDEFIVIATRGLWD-------VVSNEFACEVVRRCLTGQLRLRFPEECSG 245 (286)
Q Consensus 173 ~~~tr~lG~~~~k~~~v~~~p~i~~~~l~~~~~~lll~SDGv~d-------~l~~~ei~~i~~~~~~~~~~~~~~~~~~~ 245 (286)
.....+|- .|.. .+.+....+.+ |+.+++.|||++| .+..+....++.+.
T Consensus 273 -~~g~piG~---~~~~---~~~~~~~~l~~-gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~--------------- 329 (367)
T COG2208 273 -ALGLPIGL---LPDY---QYEVASLQLEP-GDLLVLYTDGVTEARNSDGEFFGLERLLKILGRL--------------- 329 (367)
T ss_pred -CCCceeee---cCCc---cchheeEEecC-CCEEEEEcCCeeeeecCCccEecHHHHHHHHHHH---------------
Confidence 22444554 2322 55566777777 7888999999998 45666777777753
Q ss_pred CCCCcHHHHHHHHHHHHHH----cCCCCCcEEEEEEeC
Q 023178 246 SGPSGAAEAATMLAELALA----RGSKHNISVIVVELK 279 (286)
Q Consensus 246 ~~~~~~~~~a~~l~~~a~~----~g~~DNiTvivv~~~ 279 (286)
...++++.++.+.+...+ ....||+|++++++.
T Consensus 330 -~~~~~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 330 -LGQPAEEILEAILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred -hCCCHHHHHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence 246788888888887765 335788999999975
No 20
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=67.19 E-value=9.1 Score=31.01 Aligned_cols=49 Identities=27% Similarity=0.420 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCc-----------CCCCHHHHHHHHHHhhhccccccCCCCCCCCCCCcHHHHHHHHHHHHHHcC
Q 023178 204 DEFIVIATRGLW-----------DVVSNEFACEVVRRCLTGQLRLRFPEECSGSGPSGAAEAATMLAELALARG 266 (286)
Q Consensus 204 ~~~lll~SDGv~-----------d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~a~~~g 266 (286)
|+.+|+.|.|+| |+|.++.+=+.+.+-+. .-+-|.+.|+.|++.-..||
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D--------------~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWD--------------EFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCc--------------cccchHHHHHHHHHHHHhcC
Confidence 567899999999 34445555454444222 23678999999999977765
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=53.32 E-value=8.8 Score=26.09 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=15.4
Q ss_pred EcCCCCeEEEEEcCCCcCCCC
Q 023178 199 ARSELDEFIVIATRGLWDVVS 219 (286)
Q Consensus 199 ~l~~~~~~lll~SDGv~d~l~ 219 (286)
+++..|.-+|+++||+|=.+.
T Consensus 22 ~l~~~G~Rllva~nGv~lEv~ 42 (72)
T PF09436_consen 22 PLERPGHRLLVASNGVFLEVR 42 (72)
T ss_pred ccccCCcEEEEecCcEEEEEe
Confidence 345457778999999996544
No 22
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=46.76 E-value=34 Score=22.21 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHhhhccccccCCCCCCCCCCCcHHHHHHHHHHH
Q 023178 218 VSNEFACEVVRRCLTGQLRLRFPEECSGSGPSGAAEAATMLAEL 261 (286)
Q Consensus 218 l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~ 261 (286)
-+++||..++.. +.-+|.+++++|+.+
T Consensus 19 hse~eIya~L~e-----------------cnMDpnea~qrLL~q 45 (60)
T PF06972_consen 19 HSEEEIYAMLKE-----------------CNMDPNEAVQRLLSQ 45 (60)
T ss_pred CCHHHHHHHHHH-----------------hCCCHHHHHHHHHhc
Confidence 578999999998 578999999999875
No 23
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=42.62 E-value=54 Score=17.41 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=17.3
Q ss_pred EEEEeCceEEEEEeccceEEEE
Q 023178 108 VVMVDEEELVVANRGNSRIVLC 129 (286)
Q Consensus 108 ~~~i~~~~l~~a~vGDsr~~l~ 129 (286)
+++-.++.+|++-.|..|+..+
T Consensus 7 vav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 7 VAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEETTSEEEEEECCCTEEEEE
T ss_pred EEEeCCCCEEEEECCCCEEEEC
Confidence 3444889999999999988754
No 24
>PF14459 Prok-E2_C: Prokaryotic E2 family C
Probab=32.60 E-value=1.6e+02 Score=21.76 Aligned_cols=89 Identities=11% Similarity=0.039 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhHHHHhcCCCCCCCCCeEEEEEEeCceEEEEEeccceEEEEe
Q 023178 51 ACRERLHLIVAQEVKERRKREGCGGGWEDLMAACFLKMDEEVTGAGRDASSVGPSALVVMVDEEELVVANRGNSRIVLCR 130 (286)
Q Consensus 51 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~gsT~~~~~i~~~~l~~a~vGDsr~~l~~ 130 (286)
...+.+++.+.+...... -.....-...+.+.++++...+...- ...+.|.++++|++.+..=.-+. =.+.++.+
T Consensus 14 A~lDL~vRLlARLYP~l~--ilp~g~as~~~a~~l~~LA~sINp~I-~i~r~G~s~~~clV~G~trp~~s--c~~fFiGS 88 (131)
T PF14459_consen 14 ASLDLVVRLLARLYPKLC--ILPSGEASSFQAQNLQSLARSINPRI-EIRRSGSSPMHCLVIGSTRPKIS--CPRFFIGS 88 (131)
T ss_pred hHHHHHHHHHHHhcceEE--EeecchhHHHHHHHHHHHHHhcCCCe-EEEecCCCceEEEEecCCCCCcc--cceEEEcC
Confidence 344555555555443322 11122223334555555555544333 44456777888877654211111 24667778
Q ss_pred CCeEEEcCCCCCCC
Q 023178 131 AGVAVPLSRDHKPD 144 (286)
Q Consensus 131 ~g~~~~lt~dh~~~ 144 (286)
+|-.-.+++.....
T Consensus 89 dGW~Ak~S~t~Pvg 102 (131)
T PF14459_consen 89 DGWIAKFSPTEPVG 102 (131)
T ss_pred CceeeecccCCCcc
Confidence 88888888766554
No 25
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=31.29 E-value=1.8e+02 Score=22.46 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=28.8
Q ss_pred ccCceEEEEEcCCCCeEEEEEcCCCcCCCCHHHHHHHHHH
Q 023178 190 LSKPEVTVNARSELDEFIVIATRGLWDVVSNEFACEVVRR 229 (286)
Q Consensus 190 ~~~p~i~~~~l~~~~~~lll~SDGv~d~l~~~ei~~i~~~ 229 (286)
.|.|.+....++...--++-...|+|..++.++...+.+.
T Consensus 75 LP~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (157)
T PF14014_consen 75 LPPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKE 114 (157)
T ss_pred CCCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHH
Confidence 5678888777775444446688888888888877666655
No 26
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=31.03 E-value=39 Score=24.32 Aligned_cols=26 Identities=8% Similarity=0.273 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCcCCCCHHHHHHHHHH
Q 023178 204 DEFIVIATRGLWDVVSNEFACEVVRR 229 (286)
Q Consensus 204 ~~~lll~SDGv~d~l~~~ei~~i~~~ 229 (286)
++-++|+.|||+-.+...+..+-++.
T Consensus 25 ~D~vlL~qdGV~aAl~~~~~~~sl~~ 50 (96)
T COG2168 25 GDAVLLLQDGVYAALKGNRYLASLRE 50 (96)
T ss_pred cCeEEEEcccchhhhcCcHHHHHHhc
Confidence 45569999999999998887777765
No 27
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=27.07 E-value=2.7e+02 Score=20.83 Aligned_cols=43 Identities=16% Similarity=0.206 Sum_probs=31.7
Q ss_pred CccccCceEEEEEcCCCCeEEEEEcCCCcC-------CCCHHHHHHHHHH
Q 023178 187 YVVLSKPEVTVNARSELDEFIVIATRGLWD-------VVSNEFACEVVRR 229 (286)
Q Consensus 187 ~~v~~~p~i~~~~l~~~~~~lll~SDGv~d-------~l~~~ei~~i~~~ 229 (286)
.+++..|++...+....+-|.|++..-.-+ .++++++.-++.+
T Consensus 37 ~~Vi~~P~V~~m~~~g~~tY~I~Ge~~~e~~~~~~~~~i~~edI~lv~~q 86 (115)
T PRK06369 37 EIVFENPQVTVMDAQGQKTYQIVGEPEEVEKEAEKEVEIPEEDIELVAEQ 86 (115)
T ss_pred EEEEcCCeEEEEecCCCcEEEEEeccEEeeccccccCCCCHHHHHHHHHH
Confidence 345889999999988777788888877654 3566776665554
No 28
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=24.35 E-value=1.3e+02 Score=16.92 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=15.2
Q ss_pred CceEEEEEeccceEEEEeC
Q 023178 113 EEELVVANRGNSRIVLCRA 131 (286)
Q Consensus 113 ~~~l~~a~vGDsr~~l~~~ 131 (286)
++++|+++-|+..+.++.-
T Consensus 3 ~~~lyv~~~~~~~v~~id~ 21 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDT 21 (42)
T ss_pred CCEEEEEeCCCCEEEEEEC
Confidence 5679999999888887753
No 29
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=22.97 E-value=3.1e+02 Score=20.11 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=41.5
Q ss_pred EEcCCCcCCCCHHHHHHHHHHhhhccccccCCCCCCCCCCCcHHHHHHHHHHHHHHc-CCCCCcEEEEEEeCC
Q 023178 209 IATRGLWDVVSNEFACEVVRRCLTGQLRLRFPEECSGSGPSGAAEAATMLAELALAR-GSKHNISVIVVELKK 280 (286)
Q Consensus 209 l~SDGv~d~l~~~ei~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~a~~~-g~~DNiTvivv~~~~ 280 (286)
-.||-+-+.++-..+.+.+.+.+... .-...+.+|+.|.+..+.. .....+++-+-+.+.
T Consensus 42 ~~~D~l~~tidY~~l~~~i~~~~~~~------------~~~llE~La~~ia~~i~~~~~~v~~v~v~v~K~~~ 102 (118)
T cd00534 42 GESDDLADTLNYAEVAKLIKKIVEGS------------PFKLIETLAEEIADILLEDYPKVSAIKVKVEKPNA 102 (118)
T ss_pred hccCChhhccCHHHHHHHHHHHHhCC------------CHhHHHHHHHHHHHHHHHhCCCceEEEEEEECCCC
Confidence 46788888888898888887765421 1256788999999998876 344555555555443
Done!