BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023179
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48721|HEM4_ARATH Uroporphyrinogen-III synthase, chloroplastic OS=Arabidopsis
thaliana GN=UROS PE=2 SV=2
Length = 321
Score = 349 bits (896), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 172/236 (72%), Positives = 199/236 (84%), Gaps = 1/236 (0%)
Query: 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110
P+VVVTRERGKN ++IKAL K+ I LELPLIQHA+GPD DRL+SVLN D FDWIIITS
Sbjct: 65 PQVVVTRERGKNNQIIKALEKNGISSLELPLIQHARGPDFDRLASVLN-DKSFDWIIITS 123
Query: 111 PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE 170
PEAGSVFLEAWK A +P V+IGVVGAGTA +FEE ++S+ L VAF+PSKATGK+LASE
Sbjct: 124 PEAGSVFLEAWKTASSPEVQIGVVGAGTARVFEEAMKSADGLLHVAFTPSKATGKVLASE 183
Query: 171 LPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIP 230
LP+ K+ +VLYPAS KA N+I EGLS RGFEVVRLNTYTT PV VD +L+QALS P
Sbjct: 184 LPEKVGKRSSVLYPASLKAGNDIVEGLSKRGFEVVRLNTYTTVPVQSVDTVLLQQALSAP 243
Query: 231 VVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 286
V++VASPSAVR+W++LI + EQWSN VACIGETTASAA+RLGLKNVYYP PGLEG
Sbjct: 244 VLSVASPSAVRAWLHLIQNEEQWSNYVACIGETTASAARRLGLKNVYYPEKPGLEG 299
>sp|Q10QR9|HEM4_ORYSJ Uroporphyrinogen-III synthase, chloroplastic OS=Oryza sativa subsp.
japonica GN=UROS PE=2 SV=1
Length = 302
Score = 335 bits (858), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 165/243 (67%), Positives = 190/243 (78%), Gaps = 1/243 (0%)
Query: 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIF 103
A +S P VVVTRERGKN KLI AL KH + LELPLI+H +GPDTDRLS+VL D F
Sbjct: 40 ACSSPPPPDVVVTRERGKNAKLIAALEKHNVQSLELPLIKHVEGPDTDRLSAVLR-DEKF 98
Query: 104 DWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKAT 163
DWI ITSPEA +VFLE WK AG P VRI VVGAGT +F+EVIQ + SL+VAFSPSKA
Sbjct: 99 DWITITSPEAAAVFLEGWKAAGNPKVRIAVVGAGTERVFDEVIQYNDGSLEVAFSPSKAM 158
Query: 164 GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVL 223
GK LASELP+ + C VLYPASAKA +EI+ GLSNRGFEV RLNTYTT V VD +L
Sbjct: 159 GKFLASELPRTTETTCKVLYPASAKAGHEIQNGLSNRGFEVTRLNTYTTVSVQDVDPLIL 218
Query: 224 KQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPG 283
K ALS PVVAVASPSA+R+W+NL S + W N++ACIGETTASAAK+ GLK++YYPT PG
Sbjct: 219 KPALSAPVVAVASPSALRAWLNLASQVDNWGNAIACIGETTASAAKKFGLKSIYYPTTPG 278
Query: 284 LEG 286
L+G
Sbjct: 279 LDG 281
>sp|Q59294|HEM4_CLOJO Porphyrin biosynthesis protein HemD OS=Clostridium josui GN=hemD
PE=3 SV=1
Length = 504
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 102/232 (43%), Gaps = 13/232 (5%)
Query: 52 KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111
K++VTR + +G L++ L + + +E P I+ P ++L + WI++TS
Sbjct: 255 KILVTRPKESSGTLVEKLRQLGAEPVEYPCIEVVPIPQNEKLYHACENIREYGWILLTSK 314
Query: 112 EAGSVFLEAWKEAGTP-----NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKI 166
+F + G N +IG VG+ TA +EV L F+P G+
Sbjct: 315 NGIQIFFDYLNSKGLDARVLANTKIGTVGSQTAKALKEV------GLISDFTPEIFDGRH 368
Query: 167 LASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA 226
LA + + + VL +A AS++I L + + R+ Y T ++ V K
Sbjct: 369 LALGIAERVGENEKVLICDAAIASDDIVNILRSNNIKFDRVPLYNTNYINENSNKVKKSI 428
Query: 227 L--SIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 276
+ + + S S V ++ + D S + CIG TA AAK+ L+ V
Sbjct: 429 VHGELKYITFTSASTVEGFIASMKDIPLESLTAVCIGNKTAEAAKKYNLRYV 480
>sp|Q8KCJ3|HEM4_CHLTE Uroporphyrinogen-III synthase OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=hemD PE=3 SV=1
Length = 246
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 100/244 (40%), Gaps = 31/244 (12%)
Query: 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQ--HAQG---PDTDRLSSVLNADTIFDWII 107
V+VTR + + ++ LA++ +D + P I+ G PD R F I
Sbjct: 4 VLVTRPKHQAEPFVRELAQYGLDSVVFPTIEIRPVTGWSVPDLTR----------FAGIF 53
Query: 108 ITSPEAGSVFLEAWKEAG---TPNV---RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK 161
TSP + FLE E PN+ R+ VG T E K + + P
Sbjct: 54 FTSPNSVQFFLERLLEESPDELPNLQQARVWAVGKTTGGDLE------KHGVSIEPLPKS 107
Query: 162 ATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY-TTEPVHHVDQ 220
A L S + + + T L+ + + I E ++ RG V L Y +P Q
Sbjct: 108 ADAVSLMSGIDASEIEGKTFLFVRGSLSLGTIPEVIAKRGGICVELTVYDNIQPSLEETQ 167
Query: 221 TV--LKQALSIPVVAVASPSAVRSWVNLISDTEQWSNS-VACIGETTASAAKRLGLKNVY 277
+ L I ++ SPS ++ I E S+ +A IG TT+SA ++LG+K
Sbjct: 168 KIKSLLTEGKIDCLSFTSPSTAINFFEAIDSKEVPSDVLIAAIGTTTSSALEKLGVKVDI 227
Query: 278 YPTH 281
P +
Sbjct: 228 IPEY 231
>sp|Q59335|HEM4_CHLP8 Uroporphyrinogen-III synthase OS=Chlorobaculum parvum (strain NCIB
8327) GN=hemD PE=3 SV=1
Length = 246
Score = 38.1 bits (87), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 99/242 (40%), Gaps = 27/242 (11%)
Query: 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQ--HAQGPDTDRLSSVLNADTIFDWIIITS 110
V+VTR + + ++ L ++ + + P I+ G + L T F I TS
Sbjct: 4 VLVTRPKHQAAPFVRELEQYGLSTVVFPTIEIRPVAGWNVPDL-------TKFAGIFFTS 56
Query: 111 PEAGSVFLEAWKEAGTPNV------RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATG 164
P + FL+ + + R+ VG T E K + + P A
Sbjct: 57 PNSVQFFLKHLLQTAPDELKNLQQTRVWAVGKTTGQDLE------KHGVSIEPLPKIADA 110
Query: 165 KILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLK 224
L +++ K T L+ + + I E ++ G V L Y P D +K
Sbjct: 111 VNLMADIDPAEIKGQTFLFVRGSLSLGTIPELIAEFGGTCVELTVYENLPPSLEDTQRVK 170
Query: 225 QALS---IPVVAVASPSAVRSWVNLISDTEQWSNSV--ACIGETTASAAKRLGLKNVYYP 279
L+ + ++ SPS +++ I +++ S+SV A IG TT+ A +++G+K P
Sbjct: 171 DMLAEGKLDCLSFTSPSTAKNFFEAIG-SKELSDSVQIAAIGTTTSGALEKMGIKVDIIP 229
Query: 280 TH 281
+
Sbjct: 230 EY 231
>sp|B5QTH9|PHNW_SALEP 2-aminoethylphosphonate--pyruvate transaminase OS=Salmonella
enteritidis PT4 (strain P125109) GN=phnW PE=3 SV=1
Length = 367
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 40 DATSASASNSNPKVVVTRERGKNGKLIK-----ALAKHRIDCLELPLIQHAQGPDTDRLS 94
+A SA KV++ ++++ +A H DC E+ PD +
Sbjct: 71 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR------PDVQAID 124
Query: 95 SVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIG 132
++LNAD I + E + L E GT R G
Sbjct: 125 AILNADPTISHIAMVHSETTTGMLNPIDEVGTLAHRYG 162
>sp|B5FKT6|PHNW_SALDC 2-aminoethylphosphonate--pyruvate transaminase OS=Salmonella dublin
(strain CT_02021853) GN=phnW PE=3 SV=1
Length = 367
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 40 DATSASASNSNPKVVVTRERGKNGKLIK-----ALAKHRIDCLELPLIQHAQGPDTDRLS 94
+A SA KV++ ++++ +A H DC E+ PD +
Sbjct: 71 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR------PDVQAID 124
Query: 95 SVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIG 132
++LNAD I + E + L E GT R G
Sbjct: 125 AILNADPTISHIAMVHSETTTGMLNPIDEVGTLAHRYG 162
>sp|B5R6T2|PHNW_SALG2 2-aminoethylphosphonate--pyruvate transaminase OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=phnW PE=3
SV=1
Length = 367
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 40 DATSASASNSNPKVVVTRERGKNGKLIK-----ALAKHRIDCLELPLIQHAQGPDTDRLS 94
+A SA KV++ ++++ +A H DC E+ PD +
Sbjct: 71 EAVLGSALGPQDKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVAR------PDVQAID 124
Query: 95 SVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIG 132
++LNAD I + E + L E GT R G
Sbjct: 125 AILNADPTISHIAMVHSETTTGMLNPIDEVGTLAHRYG 162
>sp|A6GX63|SECA_FLAPJ Protein translocase subunit SecA OS=Flavobacterium psychrophilum
(strain JIP02/86 / ATCC 49511) GN=secA PE=3 SV=1
Length = 1116
Score = 31.2 bits (69), Expect = 7.9, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 223 LKQALSIPVVAVASP---SAVRSWVNLISDTEQWSNSVACIGE 262
K+ I V A A SA +S++NL+ DT W+NS + G+
Sbjct: 123 FKENKQITVTATAKDRELSATKSYINLVGDTAVWANSWSAAGK 165
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,918,522
Number of Sequences: 539616
Number of extensions: 4033713
Number of successful extensions: 9030
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 9022
Number of HSP's gapped (non-prelim): 15
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)