Query 023179
Match_columns 286
No_of_seqs 149 out of 1406
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:01:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05752 uroporphyrinogen-III 100.0 3.8E-43 8.2E-48 313.0 27.0 233 48-286 1-242 (255)
2 PRK08811 uroporphyrinogen-III 100.0 7.2E-43 1.6E-47 312.5 25.5 235 44-286 12-251 (266)
3 COG1587 HemD Uroporphyrinogen- 100.0 7.9E-41 1.7E-45 296.9 26.0 227 50-285 1-235 (248)
4 PRK07239 bifunctional uroporph 100.0 3.4E-40 7.5E-45 309.9 26.5 235 44-286 5-267 (381)
5 PRK09189 uroporphyrinogen-III 100.0 5.3E-40 1.1E-44 290.2 24.4 225 51-286 1-232 (240)
6 PRK05928 hemD uroporphyrinogen 100.0 2.9E-39 6.3E-44 285.2 26.5 229 51-286 2-239 (249)
7 cd06578 HemD Uroporphyrinogen- 100.0 4.1E-37 8.9E-42 269.2 26.6 226 53-286 1-234 (239)
8 PF02602 HEM4: Uroporphyrinoge 100.0 1.2E-38 2.6E-43 279.2 15.9 216 63-286 1-228 (231)
9 PRK06975 bifunctional uroporph 100.0 6.1E-37 1.3E-41 304.0 26.3 230 49-285 2-256 (656)
10 PRK07168 bifunctional uroporph 100.0 4E-34 8.6E-39 273.6 19.9 215 25-276 234-458 (474)
11 KOG4132 Uroporphyrinogen III s 100.0 5.2E-31 1.1E-35 222.0 20.7 228 51-285 4-245 (260)
12 PRK05928 hemD uroporphyrinogen 99.7 1.1E-15 2.4E-20 134.7 13.5 120 48-174 123-247 (249)
13 cd06578 HemD Uroporphyrinogen- 99.6 7.3E-15 1.6E-19 128.3 14.5 118 47-171 119-239 (239)
14 PRK07239 bifunctional uroporph 99.6 7.4E-14 1.6E-18 131.4 14.5 121 47-175 139-276 (381)
15 PRK05752 uroporphyrinogen-III 99.5 1.2E-13 2.6E-18 123.2 13.0 120 49-175 129-251 (255)
16 KOG4132 Uroporphyrinogen III s 99.5 1.6E-13 3.5E-18 116.5 12.8 131 36-175 122-255 (260)
17 PF02602 HEM4: Uroporphyrinoge 99.5 2.8E-14 6.2E-19 124.7 7.0 116 47-169 114-231 (231)
18 PRK09189 uroporphyrinogen-III 99.5 4.3E-13 9.2E-18 118.4 13.3 117 49-172 117-238 (240)
19 COG1587 HemD Uroporphyrinogen- 99.5 5.9E-13 1.3E-17 118.3 12.7 118 50-174 123-244 (248)
20 PRK07168 bifunctional uroporph 99.4 7.1E-12 1.5E-16 120.6 16.8 231 48-286 78-360 (474)
21 PRK08811 uroporphyrinogen-III 99.4 5.5E-12 1.2E-16 113.1 13.3 120 49-175 137-260 (266)
22 PRK06975 bifunctional uroporph 99.2 1.9E-10 4.1E-15 115.1 11.4 102 177-278 2-105 (656)
23 cd06298 PBP1_CcpA_like Ligand- 96.4 0.15 3.2E-06 44.6 14.2 179 64-262 20-214 (268)
24 cd06295 PBP1_CelR Ligand bindi 96.3 0.11 2.4E-06 45.7 13.3 180 65-264 32-225 (275)
25 cd06272 PBP1_hexuronate_repres 96.1 0.1 2.2E-06 45.5 11.8 179 64-265 20-212 (261)
26 cd01575 PBP1_GntR Ligand-bindi 96.1 0.12 2.6E-06 45.0 12.0 183 63-263 19-215 (268)
27 cd06273 PBP1_GntR_like_1 This 96.0 0.16 3.5E-06 44.4 12.8 178 63-262 19-215 (268)
28 cd06299 PBP1_LacI_like_13 Liga 95.9 0.16 3.4E-06 44.4 12.2 181 63-263 19-213 (265)
29 cd06286 PBP1_CcpB_like Ligand- 95.8 0.22 4.8E-06 43.3 12.6 180 63-263 19-213 (260)
30 cd01542 PBP1_TreR_like Ligand- 95.8 0.14 3.1E-06 44.4 11.2 177 63-263 19-211 (259)
31 cd06271 PBP1_AglR_RafR_like Li 95.8 0.18 3.8E-06 44.0 11.8 181 63-263 23-219 (268)
32 cd06294 PBP1_ycjW_transcriptio 95.7 0.23 5E-06 43.3 12.3 184 63-263 24-221 (270)
33 COG1609 PurR Transcriptional r 95.7 0.12 2.5E-06 47.9 10.6 181 63-262 78-274 (333)
34 cd06283 PBP1_RegR_EndR_KdgR_li 95.6 0.43 9.2E-06 41.5 13.5 181 63-263 19-216 (267)
35 PRK02261 methylaspartate mutas 95.5 0.44 9.4E-06 38.4 12.3 113 49-174 2-133 (137)
36 cd06301 PBP1_rhizopine_binding 95.4 0.21 4.5E-06 43.8 11.1 182 64-262 20-219 (272)
37 cd06320 PBP1_allose_binding Pe 95.4 0.4 8.6E-06 42.2 12.8 180 63-262 19-217 (275)
38 cd06270 PBP1_GalS_like Ligand 95.4 0.38 8.2E-06 42.1 12.6 181 63-262 19-214 (268)
39 PRK10423 transcriptional repre 95.3 0.88 1.9E-05 41.1 15.0 181 63-263 76-273 (327)
40 cd06297 PBP1_LacI_like_12 Liga 95.3 0.46 9.9E-06 41.8 12.8 179 63-263 19-218 (269)
41 cd06296 PBP1_CatR_like Ligand- 95.2 0.26 5.5E-06 43.1 10.9 181 64-262 20-215 (270)
42 cd06292 PBP1_LacI_like_10 Liga 95.2 0.26 5.7E-06 43.2 10.9 182 63-262 19-218 (273)
43 TIGR02853 spore_dpaA dipicolin 95.2 1.6 3.4E-05 39.7 16.0 214 50-283 1-266 (287)
44 cd06274 PBP1_FruR Ligand bindi 95.1 0.57 1.2E-05 40.9 12.9 182 64-264 20-217 (264)
45 cd06305 PBP1_methylthioribose_ 95.1 0.39 8.5E-06 42.0 11.9 190 63-270 19-228 (273)
46 TIGR01481 ccpA catabolite cont 95.1 0.88 1.9E-05 41.2 14.4 179 64-262 80-273 (329)
47 cd06289 PBP1_MalI_like Ligand- 95.1 1.3 2.9E-05 38.3 15.0 180 64-264 20-217 (268)
48 cd06288 PBP1_sucrose_transcrip 95.0 0.32 7E-06 42.4 11.0 180 64-262 21-214 (269)
49 PF00532 Peripla_BP_1: Peripla 95.0 0.14 3E-06 46.1 8.8 169 63-250 21-202 (279)
50 cd06309 PBP1_YtfQ_like Peripla 95.0 0.31 6.8E-06 42.8 10.9 200 63-277 19-239 (273)
51 cd06310 PBP1_ABC_sugar_binding 94.9 0.36 7.9E-06 42.3 11.1 183 63-263 19-219 (273)
52 cd06279 PBP1_LacI_like_3 Ligan 94.9 0.74 1.6E-05 40.8 13.0 177 63-262 24-232 (283)
53 COG2185 Sbm Methylmalonyl-CoA 94.8 0.52 1.1E-05 38.2 10.5 107 49-167 11-130 (143)
54 cd06284 PBP1_LacI_like_6 Ligan 94.8 0.7 1.5E-05 40.1 12.4 180 63-263 19-214 (267)
55 cd06290 PBP1_LacI_like_9 Ligan 94.7 0.62 1.3E-05 40.6 12.0 178 64-262 20-213 (265)
56 cd01545 PBP1_SalR Ligand-bindi 94.7 0.69 1.5E-05 40.3 12.3 183 63-262 19-216 (270)
57 PRK11303 DNA-binding transcrip 94.7 0.45 9.8E-06 43.1 11.4 179 64-263 82-276 (328)
58 PF13407 Peripla_BP_4: Peripla 94.6 0.51 1.1E-05 41.0 11.2 191 63-274 18-231 (257)
59 cd06285 PBP1_LacI_like_7 Ligan 94.6 0.56 1.2E-05 40.9 11.4 178 63-262 19-212 (265)
60 cd01537 PBP1_Repressors_Sugar_ 94.6 0.37 8.1E-06 41.3 10.1 183 63-263 19-216 (264)
61 PRK10014 DNA-binding transcrip 94.6 1.1 2.4E-05 40.8 13.8 165 65-249 86-264 (342)
62 cd06281 PBP1_LacI_like_5 Ligan 94.5 0.43 9.4E-06 41.8 10.4 178 64-262 20-213 (269)
63 cd06313 PBP1_ABC_sugar_binding 94.3 0.5 1.1E-05 41.8 10.5 185 63-265 19-220 (272)
64 cd06275 PBP1_PurR Ligand-bindi 94.3 1.1 2.4E-05 39.0 12.6 180 64-262 20-215 (269)
65 cd01574 PBP1_LacI Ligand-bindi 94.3 0.89 1.9E-05 39.5 11.9 180 63-262 19-211 (264)
66 PRK08306 dipicolinate synthase 94.3 0.99 2.1E-05 41.1 12.4 214 50-283 2-267 (296)
67 cd06267 PBP1_LacI_sugar_bindin 94.3 0.95 2.1E-05 38.8 12.0 179 63-261 19-213 (264)
68 cd06278 PBP1_LacI_like_2 Ligan 94.0 0.58 1.2E-05 40.6 10.0 178 63-262 19-212 (266)
69 cd01541 PBP1_AraR Ligand-bindi 93.9 0.79 1.7E-05 40.2 10.9 180 63-262 19-220 (273)
70 cd06316 PBP1_ABC_sugar_binding 93.9 0.83 1.8E-05 40.7 11.2 185 65-263 21-221 (294)
71 PRK10703 DNA-binding transcrip 93.8 1.4 3.1E-05 40.1 12.8 181 63-262 79-276 (341)
72 cd06293 PBP1_LacI_like_11 Liga 93.5 1.8 3.9E-05 37.8 12.5 180 64-263 20-215 (269)
73 TIGR00640 acid_CoA_mut_C methy 93.5 1.8 4E-05 34.5 11.3 111 50-173 2-125 (132)
74 cd06300 PBP1_ABC_sugar_binding 93.5 2.5 5.4E-05 36.9 13.4 160 101-276 59-235 (272)
75 cd06318 PBP1_ABC_sugar_binding 93.4 1.3 2.9E-05 38.9 11.5 184 63-263 19-226 (282)
76 cd06323 PBP1_ribose_binding Pe 93.4 1.5 3.2E-05 38.0 11.7 180 64-263 20-216 (268)
77 cd06314 PBP1_tmGBP Periplasmic 93.3 0.72 1.6E-05 40.5 9.7 183 63-264 18-216 (271)
78 cd06302 PBP1_LsrB_Quorum_Sensi 93.3 0.86 1.9E-05 40.9 10.2 191 63-270 19-230 (298)
79 cd06354 PBP1_BmpA_PnrA_like Pe 93.2 2.5 5.4E-05 37.2 13.0 172 63-250 22-205 (265)
80 cd06280 PBP1_LacI_like_4 Ligan 93.2 1.4 3E-05 38.4 11.2 178 63-263 19-210 (263)
81 cd06308 PBP1_sensor_kinase_lik 93.1 2.2 4.8E-05 37.3 12.3 181 64-262 20-217 (270)
82 cd01536 PBP1_ABC_sugar_binding 92.8 1.5 3.2E-05 37.8 10.7 181 64-262 20-216 (267)
83 cd06282 PBP1_GntR_like_2 Ligan 92.6 1.3 2.9E-05 38.3 10.2 178 64-263 20-214 (266)
84 COG4822 CbiK Cobalamin biosynt 92.6 2 4.4E-05 37.2 10.6 143 65-216 65-241 (265)
85 cd06276 PBP1_FucR_like Ligand- 92.5 1.6 3.5E-05 38.1 10.6 170 63-263 18-200 (247)
86 cd06277 PBP1_LacI_like_1 Ligan 92.3 2.5 5.5E-05 36.8 11.7 180 64-262 23-214 (268)
87 PRK10727 DNA-binding transcrip 92.3 2.3 5E-05 38.9 11.8 178 64-263 80-275 (343)
88 cd02072 Glm_B12_BD B12 binding 92.3 1.9 4.2E-05 34.3 9.7 98 62-172 16-127 (128)
89 cd06322 PBP1_ABC_sugar_binding 92.3 2.1 4.7E-05 37.2 11.2 179 63-262 19-213 (267)
90 cd06307 PBP1_uncharacterized_s 92.3 3.6 7.8E-05 36.0 12.6 184 64-262 20-220 (275)
91 cd06321 PBP1_ABC_sugar_binding 92.3 3 6.6E-05 36.3 12.1 145 101-261 56-214 (271)
92 PRK10653 D-ribose transporter 92.2 1.3 2.8E-05 39.6 9.7 181 63-263 46-242 (295)
93 PRK02910 light-independent pro 92.0 13 0.00028 36.7 17.2 201 60-278 175-386 (519)
94 TIGR01501 MthylAspMutase methy 92.0 3.5 7.7E-05 33.1 10.9 109 51-173 2-130 (134)
95 cd01391 Periplasmic_Binding_Pr 91.9 2.7 5.8E-05 35.5 11.1 150 101-263 57-219 (269)
96 PF04392 ABC_sub_bind: ABC tra 91.9 3.5 7.6E-05 37.2 12.3 173 62-245 17-201 (294)
97 PRK02261 methylaspartate mutas 91.8 1.8 3.8E-05 34.9 9.1 98 179-282 4-122 (137)
98 cd02072 Glm_B12_BD B12 binding 91.8 2.3 5.1E-05 33.8 9.6 88 189-282 15-118 (128)
99 cd06312 PBP1_ABC_sugar_binding 91.7 1.1 2.4E-05 39.2 8.7 185 63-264 20-220 (271)
100 cd01544 PBP1_GalR Ligand-bindi 91.5 7.5 0.00016 34.0 13.7 172 63-262 24-216 (270)
101 PRK10401 DNA-binding transcrip 91.4 3.2 7E-05 37.9 11.7 180 64-262 80-274 (346)
102 PRK09496 trkA potassium transp 91.4 14 0.00029 35.4 19.2 216 51-281 1-263 (453)
103 PF13344 Hydrolase_6: Haloacid 91.4 1.7 3.7E-05 32.8 8.2 82 162-274 17-101 (101)
104 cd00316 Oxidoreductase_nitroge 91.4 12 0.00026 35.1 15.7 141 61-212 167-313 (399)
105 TIGR00640 acid_CoA_mut_C methy 91.2 1.2 2.5E-05 35.7 7.5 90 189-282 18-115 (132)
106 PF06506 PrpR_N: Propionate ca 90.9 4.2 9E-05 33.9 10.9 117 127-278 33-149 (176)
107 cd06317 PBP1_ABC_sugar_binding 90.9 3 6.4E-05 36.3 10.5 181 64-262 21-222 (275)
108 TIGR02417 fruct_sucro_rep D-fr 90.8 3.2 6.9E-05 37.5 11.0 178 64-262 81-274 (327)
109 cd06291 PBP1_Qymf_like Ligand 90.5 2.8 6.1E-05 36.4 10.0 175 63-262 19-210 (265)
110 cd06287 PBP1_LacI_like_8 Ligan 90.4 4.8 0.0001 35.5 11.5 163 63-251 27-201 (269)
111 cd02067 B12-binding B12 bindin 90.4 5 0.00011 30.9 10.2 83 63-157 17-107 (119)
112 PRK09526 lacI lac repressor; R 90.3 5.2 0.00011 36.3 12.0 168 64-250 84-262 (342)
113 TIGR01501 MthylAspMutase methy 89.9 5 0.00011 32.2 9.9 88 189-282 17-120 (134)
114 cd01538 PBP1_ABC_xylose_bindin 89.8 1.4 3E-05 39.2 7.5 182 63-264 19-227 (288)
115 PLN02516 methylenetetrahydrofo 89.2 4.7 0.0001 36.9 10.4 155 66-239 61-221 (299)
116 cd02071 MM_CoA_mut_B12_BD meth 89.0 4.9 0.00011 31.4 9.2 96 63-171 17-120 (122)
117 PRK09701 D-allose transporter 88.8 6.8 0.00015 35.4 11.4 185 63-263 44-252 (311)
118 cd06311 PBP1_ABC_sugar_binding 88.7 8.8 0.00019 33.5 11.8 156 101-272 59-231 (274)
119 cd01539 PBP1_GGBP Periplasmic 88.7 6.7 0.00015 35.2 11.3 184 64-261 20-240 (303)
120 cd06319 PBP1_ABC_sugar_binding 88.5 3.9 8.4E-05 35.7 9.4 179 64-262 20-220 (277)
121 PRK14987 gluconate operon tran 88.3 8 0.00017 35.0 11.6 178 64-262 84-276 (331)
122 cd06306 PBP1_TorT-like TorT-li 87.8 4.3 9.3E-05 35.6 9.2 188 64-270 20-228 (268)
123 PF06180 CbiK: Cobalt chelatas 87.7 1.1 2.4E-05 40.2 5.3 139 63-205 61-237 (262)
124 cd06303 PBP1_LuxPQ_Quorum_Sens 87.6 8.1 0.00017 34.1 10.9 190 63-262 20-225 (280)
125 cd06324 PBP1_ABC_sugar_binding 87.2 15 0.00032 33.0 12.5 188 64-262 21-239 (305)
126 TIGR02955 TMAO_TorT TMAO reduc 87.1 7.3 0.00016 34.8 10.5 188 64-270 20-228 (295)
127 PF10087 DUF2325: Uncharacteri 86.7 3.4 7.4E-05 30.9 6.8 80 180-261 1-82 (97)
128 cd06304 PBP1_BmpA_like Peripla 86.5 9.9 0.00021 33.1 10.7 171 64-250 22-201 (260)
129 PRK15408 autoinducer 2-binding 86.2 4.4 9.6E-05 37.4 8.7 173 64-260 44-241 (336)
130 PRK09492 treR trehalose repres 86.0 25 0.00054 31.4 14.3 175 63-263 82-267 (315)
131 PLN02616 tetrahydrofolate dehy 85.5 6.3 0.00014 37.0 9.1 69 162-238 213-284 (364)
132 PRK14192 bifunctional 5,10-met 85.1 11 0.00024 34.1 10.5 149 66-237 55-211 (283)
133 PRK14191 bifunctional 5,10-met 84.9 10 0.00022 34.4 10.0 152 66-238 53-210 (285)
134 PRK11790 D-3-phosphoglycerate 84.7 27 0.0006 33.3 13.5 173 46-240 6-215 (409)
135 PRK06756 flavodoxin; Provision 84.6 5.4 0.00012 32.0 7.6 64 63-136 20-91 (148)
136 PRK11041 DNA-binding transcrip 84.6 28 0.0006 30.9 13.0 179 63-262 55-250 (309)
137 cd06341 PBP1_ABC_ligand_bindin 84.4 27 0.00059 31.6 13.0 138 101-251 66-212 (341)
138 PRK10569 NAD(P)H-dependent FMN 84.1 5.2 0.00011 34.0 7.5 58 192-249 22-94 (191)
139 COG2185 Sbm Methylmalonyl-CoA 83.8 5.3 0.00011 32.4 6.9 88 189-282 28-125 (143)
140 PLN02897 tetrahydrofolate dehy 83.7 9.6 0.00021 35.5 9.5 68 162-237 196-266 (345)
141 PRK14176 bifunctional 5,10-met 83.6 11 0.00025 34.2 9.8 161 51-237 41-216 (287)
142 TIGR02637 RhaS rhamnose ABC tr 83.5 24 0.00052 31.4 12.1 46 227-273 184-232 (302)
143 cd02071 MM_CoA_mut_B12_BD meth 83.5 4.9 0.00011 31.4 6.6 87 190-282 16-112 (122)
144 PRK06756 flavodoxin; Provision 83.3 4.8 0.0001 32.3 6.7 77 192-276 21-118 (148)
145 PF03358 FMN_red: NADPH-depend 82.7 3.2 7E-05 33.3 5.4 57 191-248 21-97 (152)
146 PRK10339 DNA-binding transcrip 82.6 36 0.00079 30.6 13.3 170 64-262 88-271 (327)
147 PRK15438 erythronate-4-phospha 82.2 17 0.00036 34.5 10.7 163 51-240 1-179 (378)
148 TIGR03567 FMN_reduc_SsuE FMN r 82.1 7.6 0.00016 32.1 7.6 28 222-249 59-93 (171)
149 PRK14187 bifunctional 5,10-met 81.9 11 0.00024 34.4 9.0 153 66-238 54-213 (294)
150 cd01972 Nitrogenase_VnfE_like 81.3 52 0.0011 31.5 14.7 139 61-210 180-326 (426)
151 cd01540 PBP1_arabinose_binding 81.2 11 0.00025 33.0 8.9 68 63-137 19-88 (289)
152 cd01543 PBP1_XylR Ligand-bindi 80.7 25 0.00054 30.4 10.9 175 63-262 18-208 (265)
153 PRK14166 bifunctional 5,10-met 80.6 15 0.00033 33.3 9.4 147 66-237 52-209 (282)
154 TIGR02405 trehalos_R_Ecol treh 80.5 20 0.00044 32.1 10.5 174 63-262 79-263 (311)
155 PRK05476 S-adenosyl-L-homocyst 80.4 57 0.0012 31.4 18.0 175 25-207 16-241 (425)
156 PRK14175 bifunctional 5,10-met 80.4 16 0.00034 33.3 9.5 148 66-239 54-212 (286)
157 PRK14189 bifunctional 5,10-met 80.3 15 0.00033 33.4 9.3 148 65-238 53-211 (285)
158 cd02067 B12-binding B12 bindin 80.1 5 0.00011 30.9 5.5 84 189-278 15-108 (119)
159 PRK10792 bifunctional 5,10-met 79.9 18 0.0004 32.8 9.7 146 65-236 54-210 (285)
160 PRK14183 bifunctional 5,10-met 79.9 17 0.00037 33.0 9.5 147 66-238 53-210 (281)
161 PRK14190 bifunctional 5,10-met 79.9 24 0.00051 32.1 10.4 152 65-237 53-210 (284)
162 PRK12480 D-lactate dehydrogena 79.8 50 0.0011 30.5 12.9 170 51-240 2-210 (330)
163 PRK14171 bifunctional 5,10-met 79.5 13 0.00029 33.7 8.7 149 66-239 54-213 (288)
164 cd06325 PBP1_ABC_uncharacteriz 79.5 41 0.00089 29.2 12.9 150 101-262 59-219 (281)
165 TIGR01278 DPOR_BchB light-inde 79.4 67 0.0015 31.6 16.1 194 60-278 175-388 (511)
166 TIGR02329 propionate_PrpR prop 78.7 59 0.0013 32.2 13.6 116 128-279 54-170 (526)
167 PF02882 THF_DHG_CYH_C: Tetrah 78.2 6.6 0.00014 32.5 5.9 69 162-238 18-89 (160)
168 cd01968 Nitrogenase_NifE_I Nit 78.0 64 0.0014 30.6 14.4 199 59-276 170-378 (410)
169 PF00148 Oxidored_nitro: Nitro 77.7 10 0.00022 35.7 7.8 202 48-271 142-358 (398)
170 PRK14169 bifunctional 5,10-met 77.4 21 0.00046 32.4 9.3 147 66-238 52-209 (282)
171 TIGR03427 ABC_peri_uca ABC tra 76.9 47 0.001 30.7 11.8 142 64-241 25-166 (328)
172 PLN02928 oxidoreductase family 76.6 24 0.00053 32.9 9.9 137 48-207 16-188 (347)
173 cd00401 AdoHcyase S-adenosyl-L 76.5 74 0.0016 30.5 13.7 38 43-80 29-67 (413)
174 PRK00257 erythronate-4-phospha 76.4 30 0.00066 32.7 10.5 163 51-240 1-179 (381)
175 PRK14180 bifunctional 5,10-met 76.3 27 0.00059 31.6 9.7 149 65-238 52-211 (282)
176 PRK10537 voltage-gated potassi 76.1 32 0.0007 32.7 10.7 116 50-173 240-370 (393)
177 cd02070 corrinoid_protein_B12- 76.1 45 0.00098 28.3 10.7 91 50-146 82-183 (201)
178 PRK10569 NAD(P)H-dependent FMN 76.1 13 0.00028 31.6 7.2 58 64-121 22-92 (191)
179 PRK14178 bifunctional 5,10-met 76.0 29 0.00063 31.4 9.8 148 66-239 48-206 (279)
180 cd01979 Pchlide_reductase_N Pc 75.6 69 0.0015 30.3 12.8 204 50-275 155-366 (396)
181 PRK14186 bifunctional 5,10-met 75.4 24 0.00052 32.3 9.2 149 65-239 53-212 (297)
182 PF03358 FMN_red: NADPH-depend 74.9 5.3 0.00011 32.0 4.4 71 63-134 21-112 (152)
183 TIGR01282 nifD nitrogenase mol 74.7 57 0.0012 31.8 12.2 171 60-246 220-402 (466)
184 PF02310 B12-binding: B12 bind 74.7 16 0.00035 27.7 7.0 88 62-161 17-113 (121)
185 cd05212 NAD_bind_m-THF_DH_Cycl 74.5 12 0.00026 30.2 6.4 70 162-239 10-82 (140)
186 TIGR02634 xylF D-xylose ABC tr 74.3 31 0.00068 30.9 9.8 178 62-262 17-219 (302)
187 PRK14177 bifunctional 5,10-met 74.2 32 0.00069 31.3 9.6 147 65-237 54-211 (284)
188 PRK10537 voltage-gated potassi 74.1 49 0.0011 31.5 11.3 102 179-280 241-357 (393)
189 PRK09496 trkA potassium transp 73.6 32 0.0007 32.8 10.2 104 177-280 230-351 (453)
190 PRK14172 bifunctional 5,10-met 73.6 35 0.00076 30.9 9.7 152 66-238 54-211 (278)
191 PRK14188 bifunctional 5,10-met 73.4 30 0.00064 31.7 9.3 125 65-207 53-188 (296)
192 PRK14173 bifunctional 5,10-met 73.2 36 0.00078 31.0 9.7 149 66-239 51-209 (287)
193 cd01079 NAD_bind_m-THF_DH NAD 72.7 23 0.00049 30.4 7.8 46 162-207 35-92 (197)
194 PRK14181 bifunctional 5,10-met 72.5 37 0.0008 30.9 9.6 149 66-239 48-211 (287)
195 PRK14168 bifunctional 5,10-met 72.2 35 0.00076 31.2 9.4 148 65-237 54-217 (297)
196 COG0569 TrkA K+ transport syst 72.2 65 0.0014 27.9 14.5 190 51-249 1-222 (225)
197 TIGR01753 flav_short flavodoxi 72.1 14 0.0003 28.9 6.2 73 53-136 3-88 (140)
198 cd01976 Nitrogenase_MoFe_alpha 71.9 95 0.0021 29.7 14.0 197 60-276 185-391 (421)
199 PRK14174 bifunctional 5,10-met 71.7 52 0.0011 30.0 10.4 150 65-239 52-217 (295)
200 TIGR03566 FMN_reduc_MsuE FMN r 71.6 15 0.00033 30.3 6.6 28 222-249 62-96 (174)
201 PRK14184 bifunctional 5,10-met 71.5 44 0.00096 30.4 9.9 149 65-236 52-212 (286)
202 PRK14719 bifunctional RNAse/5- 71.4 40 0.00087 31.7 9.9 81 117-205 13-99 (360)
203 PRK07765 para-aminobenzoate sy 71.2 46 0.00099 28.7 9.7 94 51-157 1-99 (214)
204 cd01965 Nitrogenase_MoFe_beta_ 70.8 1E+02 0.0022 29.5 17.0 201 61-276 170-393 (428)
205 PRK06703 flavodoxin; Provision 70.8 14 0.00029 29.7 6.0 63 63-136 20-90 (151)
206 PRK14179 bifunctional 5,10-met 70.8 54 0.0012 29.8 10.3 138 53-207 37-188 (284)
207 cd06167 LabA_like LabA_like pr 70.5 15 0.00033 29.2 6.2 83 61-145 53-142 (149)
208 cd01974 Nitrogenase_MoFe_beta 70.4 1E+02 0.0023 29.5 15.1 200 62-276 176-399 (435)
209 cd06268 PBP1_ABC_transporter_L 70.3 70 0.0015 27.5 13.1 152 101-265 65-227 (298)
210 TIGR00853 pts-lac PTS system, 70.1 43 0.00092 25.0 9.5 79 178-265 3-86 (95)
211 PRK06703 flavodoxin; Provision 69.8 32 0.0007 27.5 8.0 50 226-275 46-116 (151)
212 CHL00073 chlN photochlorophyll 69.8 1.1E+02 0.0025 29.7 13.0 201 52-275 195-412 (457)
213 PRK13982 bifunctional SbtC-lik 69.6 20 0.00043 35.0 7.7 65 46-110 252-342 (475)
214 PRK14182 bifunctional 5,10-met 69.4 27 0.00058 31.7 8.0 151 66-238 52-210 (282)
215 PRK10669 putative cation:proto 69.0 45 0.00097 33.1 10.3 102 179-281 418-537 (558)
216 PRK07825 short chain dehydroge 68.6 80 0.0017 27.5 12.1 70 48-124 3-75 (273)
217 TIGR01729 taurine_ABC_bnd taur 68.1 18 0.00039 32.4 6.8 67 42-113 92-158 (300)
218 TIGR01283 nifE nitrogenase mol 67.8 1.2E+02 0.0026 29.3 16.6 197 61-276 211-417 (456)
219 cd06320 PBP1_allose_binding Pe 67.5 28 0.00061 30.2 7.8 75 63-137 142-218 (275)
220 PF11798 IMS_HHH: IMS family H 67.4 7.5 0.00016 22.9 2.7 32 237-273 1-32 (32)
221 PRK05569 flavodoxin; Provision 67.3 17 0.00038 28.6 5.8 73 53-136 6-91 (141)
222 COG4635 HemG Flavodoxin [Energ 66.5 15 0.00033 30.4 5.2 69 62-141 18-94 (175)
223 PF02254 TrkA_N: TrkA-N domain 66.5 52 0.0011 24.6 10.3 103 162-279 8-116 (116)
224 TIGR01285 nifN nitrogenase mol 66.5 1.3E+02 0.0027 29.0 13.2 145 60-212 181-345 (432)
225 PRK10936 TMAO reductase system 66.4 62 0.0013 29.6 10.1 218 26-270 29-275 (343)
226 PRK09739 hypothetical protein; 66.0 25 0.00055 29.7 6.9 58 191-248 24-106 (199)
227 cd05564 PTS_IIB_chitobiose_lic 65.7 53 0.0011 24.4 9.0 76 180-264 1-81 (96)
228 PF03808 Glyco_tran_WecB: Glyc 65.7 64 0.0014 26.7 9.1 124 131-264 9-137 (172)
229 cd06326 PBP1_STKc_like Type I 65.6 1E+02 0.0022 27.6 14.0 148 101-261 67-224 (336)
230 PRK14185 bifunctional 5,10-met 65.6 46 0.001 30.4 8.7 151 66-237 53-213 (293)
231 TIGR01861 ANFD nitrogenase iro 65.6 1.5E+02 0.0032 29.4 14.5 196 60-274 215-418 (513)
232 PF00389 2-Hacid_dh: D-isomer 65.2 43 0.00093 26.1 7.7 95 53-171 1-101 (133)
233 PRK00107 gidB 16S rRNA methylt 64.8 76 0.0017 26.7 9.5 55 163-217 123-177 (187)
234 PRK14170 bifunctional 5,10-met 64.6 70 0.0015 29.0 9.7 148 66-239 53-211 (284)
235 PRK06079 enoyl-(acyl carrier p 64.6 33 0.0007 29.8 7.5 71 45-123 2-79 (252)
236 PF04016 DUF364: Domain of unk 64.1 7.9 0.00017 31.4 3.2 94 177-276 10-113 (147)
237 PRK09426 methylmalonyl-CoA mut 63.9 45 0.00097 34.4 9.2 99 62-173 599-705 (714)
238 PRK14194 bifunctional 5,10-met 63.7 61 0.0013 29.7 9.2 148 66-239 55-213 (301)
239 COG2984 ABC-type uncharacteriz 63.7 1.2E+02 0.0027 27.9 15.5 169 63-247 49-231 (322)
240 PLN03139 formate dehydrogenase 63.4 1.2E+02 0.0027 28.7 11.6 155 62-239 64-266 (386)
241 COG2014 Uncharacterized conser 63.4 38 0.00082 29.5 7.2 126 131-276 80-215 (250)
242 PRK07308 flavodoxin; Validated 63.3 26 0.00056 27.9 6.1 74 52-136 5-90 (146)
243 cd05564 PTS_IIB_chitobiose_lic 62.9 61 0.0013 24.1 9.2 74 52-137 1-80 (96)
244 PRK14167 bifunctional 5,10-met 62.5 52 0.0011 30.1 8.5 146 65-236 52-212 (297)
245 TIGR03567 FMN_reduc_SsuE FMN r 62.4 24 0.00052 29.1 5.9 68 65-132 22-102 (171)
246 PF13458 Peripla_BP_6: Peripla 62.4 1.2E+02 0.0025 27.2 12.8 138 100-251 67-214 (343)
247 cd06341 PBP1_ABC_ligand_bindin 62.2 40 0.00087 30.5 8.0 70 63-134 151-221 (341)
248 TIGR00288 conserved hypothetic 62.2 48 0.001 27.4 7.5 76 63-145 69-148 (160)
249 cd01080 NAD_bind_m-THF_DH_Cycl 61.9 32 0.0007 28.5 6.6 69 163-239 27-98 (168)
250 PRK06895 putative anthranilate 61.7 81 0.0018 26.4 9.2 88 51-156 2-94 (190)
251 cd03129 GAT1_Peptidase_E_like 61.6 62 0.0013 27.5 8.6 65 177-245 28-97 (210)
252 cd00615 Orn_deC_like Ornithine 61.5 27 0.00059 31.3 6.6 62 49-112 98-164 (294)
253 cd05565 PTS_IIB_lactose PTS_II 61.1 57 0.0012 24.6 7.2 77 180-266 2-84 (99)
254 PF10087 DUF2325: Uncharacteri 61.0 54 0.0012 24.2 7.2 55 52-112 1-58 (97)
255 PF05991 NYN_YacP: YacP-like N 60.9 15 0.00033 30.4 4.5 50 152-204 67-117 (166)
256 PRK10669 putative cation:proto 60.7 1E+02 0.0022 30.5 11.1 115 51-173 418-549 (558)
257 PF09084 NMT1: NMT1/THI5 like; 60.7 9.7 0.00021 32.1 3.4 66 41-111 84-149 (216)
258 cd01391 Periplasmic_Binding_Pr 60.4 52 0.0011 27.4 7.9 75 63-137 143-219 (269)
259 PRK14193 bifunctional 5,10-met 59.9 71 0.0015 29.0 8.9 148 66-239 54-214 (284)
260 cd06289 PBP1_MalI_like Ligand- 59.8 70 0.0015 27.3 8.8 76 63-138 137-217 (268)
261 COG0647 NagD Predicted sugar p 59.8 22 0.00048 32.0 5.6 88 57-157 24-115 (269)
262 cd06315 PBP1_ABC_sugar_binding 59.8 1.2E+02 0.0026 26.5 13.7 175 64-251 21-212 (280)
263 COG0715 TauA ABC-type nitrate/ 59.8 31 0.00068 31.2 6.8 67 42-113 128-195 (335)
264 PRK05579 bifunctional phosphop 59.7 40 0.00087 32.1 7.6 34 46-79 184-234 (399)
265 PRK05670 anthranilate synthase 59.3 1E+02 0.0023 25.6 10.0 84 57-156 7-94 (189)
266 PRK08250 glutamine amidotransf 59.1 64 0.0014 28.2 8.4 92 51-157 1-107 (235)
267 TIGR00936 ahcY adenosylhomocys 58.9 1.7E+02 0.0037 28.0 14.8 36 44-79 26-62 (406)
268 PRK01175 phosphoribosylformylg 58.8 91 0.002 27.9 9.3 91 49-155 2-109 (261)
269 COG0190 FolD 5,10-methylene-te 58.3 65 0.0014 29.2 8.2 128 66-211 52-190 (283)
270 PRK06849 hypothetical protein; 58.2 69 0.0015 30.0 9.0 89 49-140 3-112 (389)
271 PRK15395 methyl-galactoside AB 57.9 1.5E+02 0.0032 26.9 13.4 153 101-262 80-259 (330)
272 PRK09271 flavodoxin; Provision 57.9 52 0.0011 26.8 7.1 68 63-137 19-94 (160)
273 PRK11480 tauA taurine transpor 57.9 27 0.00059 31.8 6.0 67 42-113 114-180 (320)
274 TIGR01860 VNFD nitrogenase van 57.6 1.9E+02 0.0041 28.1 14.1 197 60-275 214-418 (461)
275 PF04127 DFP: DNA / pantothena 57.3 28 0.00062 29.4 5.6 18 62-79 32-49 (185)
276 PRK10444 UMP phosphatase; Prov 57.2 68 0.0015 28.3 8.3 35 168-205 26-62 (248)
277 PRK04017 hypothetical protein; 56.7 61 0.0013 25.9 7.0 82 115-205 10-97 (132)
278 PRK00170 azoreductase; Reviewe 56.6 24 0.00052 29.6 5.1 56 193-248 25-113 (201)
279 TIGR03427 ABC_peri_uca ABC tra 56.5 19 0.00042 33.2 4.8 68 43-115 99-166 (328)
280 PF13344 Hydrolase_6: Haloacid 56.5 21 0.00046 26.8 4.2 79 60-145 17-98 (101)
281 COG5426 Uncharacterized membra 56.4 9 0.0002 32.7 2.3 48 59-111 31-78 (254)
282 PF02606 LpxK: Tetraacyldisacc 56.2 31 0.00066 32.0 6.0 71 46-117 223-294 (326)
283 cd06282 PBP1_GntR_like_2 Ligan 55.4 32 0.00069 29.5 5.9 71 64-136 138-213 (266)
284 COG1927 Mtd Coenzyme F420-depe 55.2 99 0.0021 26.9 8.4 54 227-283 59-120 (277)
285 cd06310 PBP1_ABC_sugar_binding 55.1 54 0.0012 28.3 7.3 73 63-137 143-219 (273)
286 PRK06490 glutamine amidotransf 55.0 1E+02 0.0022 27.0 8.9 94 50-158 7-110 (239)
287 TIGR00521 coaBC_dfp phosphopan 54.7 49 0.0011 31.4 7.3 34 46-79 181-231 (390)
288 cd01743 GATase1_Anthranilate_S 53.9 1.2E+02 0.0027 25.0 9.0 88 54-157 3-94 (184)
289 smart00852 MoCF_biosynth Proba 53.8 23 0.0005 27.9 4.3 50 61-114 19-69 (135)
290 TIGR00853 pts-lac PTS system, 53.6 90 0.002 23.2 9.8 76 50-137 3-84 (95)
291 PF01993 MTD: methylene-5,6,7, 53.5 13 0.00028 32.8 2.9 53 102-160 59-116 (276)
292 PLN02645 phosphoglycolate phos 53.5 78 0.0017 28.8 8.3 74 177-276 59-135 (311)
293 PF02571 CbiJ: Precorrin-6x re 53.3 86 0.0019 27.8 8.2 198 51-278 1-225 (249)
294 cd01741 GATase1_1 Subgroup of 53.1 1E+02 0.0022 25.5 8.3 85 54-145 5-98 (188)
295 COG0647 NagD Predicted sugar p 53.0 29 0.00062 31.3 5.1 41 233-277 74-115 (269)
296 cd06314 PBP1_tmGBP Periplasmic 52.9 54 0.0012 28.4 6.9 46 93-138 170-216 (271)
297 PRK11303 DNA-binding transcrip 52.9 82 0.0018 28.2 8.3 44 93-136 229-275 (328)
298 cd01080 NAD_bind_m-THF_DH_Cycl 52.5 50 0.0011 27.4 6.2 58 46-113 40-98 (168)
299 PRK05234 mgsA methylglyoxal sy 52.4 48 0.001 26.8 5.9 53 48-110 30-83 (142)
300 TIGR01459 HAD-SF-IIA-hyp4 HAD- 52.4 1E+02 0.0022 26.8 8.5 78 57-138 24-105 (242)
301 cd01537 PBP1_Repressors_Sugar_ 52.3 57 0.0012 27.5 6.9 46 93-138 169-217 (264)
302 COG0075 Serine-pyruvate aminot 52.1 47 0.001 31.5 6.6 62 48-110 78-139 (383)
303 PRK15424 propionate catabolism 52.1 2.5E+02 0.0055 27.9 14.9 114 128-277 64-178 (538)
304 TIGR02370 pyl_corrinoid methyl 51.9 1.3E+02 0.0027 25.5 8.8 104 165-272 69-186 (197)
305 PRK12742 oxidoreductase; Provi 51.8 88 0.0019 26.4 8.0 32 47-78 3-35 (237)
306 cd02070 corrinoid_protein_B12- 51.7 1.1E+02 0.0023 26.0 8.4 91 178-274 82-186 (201)
307 TIGR01752 flav_long flavodoxin 51.7 1.2E+02 0.0025 24.9 8.3 9 228-236 44-52 (167)
308 PRK09739 hypothetical protein; 51.2 40 0.00086 28.5 5.6 50 63-112 24-89 (199)
309 PRK08339 short chain dehydroge 50.5 1E+02 0.0022 26.9 8.3 74 47-124 5-83 (263)
310 PRK03094 hypothetical protein; 50.5 28 0.00061 25.3 3.8 63 188-268 8-71 (80)
311 cd01740 GATase1_FGAR_AT Type 1 50.2 72 0.0016 27.9 7.2 82 54-145 4-98 (238)
312 PRK00994 F420-dependent methyl 49.8 1.9E+02 0.0041 25.7 9.4 51 227-283 59-120 (277)
313 cd06308 PBP1_sensor_kinase_lik 49.8 45 0.00097 28.9 5.9 45 92-136 172-217 (270)
314 PRK15062 hydrogenase isoenzyme 49.8 2.3E+02 0.005 26.7 12.4 147 108-277 7-163 (364)
315 cd06371 PBP1_sensory_GC_DEF_li 49.7 2.2E+02 0.0048 26.5 11.0 84 164-251 120-217 (382)
316 PRK14478 nitrogenase molybdenu 49.7 2.6E+02 0.0056 27.3 14.8 144 60-211 204-357 (475)
317 PRK05568 flavodoxin; Provision 49.6 45 0.00097 26.2 5.4 73 52-136 5-90 (142)
318 TIGR03590 PseG pseudaminic aci 49.3 68 0.0015 28.7 7.1 77 166-248 22-100 (279)
319 PRK10310 PTS system galactitol 48.8 93 0.002 23.0 6.6 50 179-236 3-58 (94)
320 PRK08594 enoyl-(acyl carrier p 48.7 1.6E+02 0.0035 25.5 9.4 73 47-123 4-83 (257)
321 TIGR01452 PGP_euk phosphoglyco 48.6 91 0.002 27.8 7.8 92 165-283 21-115 (279)
322 cd05565 PTS_IIB_lactose PTS_II 48.5 1E+02 0.0022 23.2 6.8 60 52-123 2-66 (99)
323 PRK10355 xylF D-xylose transpo 48.4 1.4E+02 0.0031 27.2 9.2 188 50-261 25-245 (330)
324 COG0426 FpaA Uncharacterized f 48.2 92 0.002 29.6 7.9 108 163-275 229-360 (388)
325 PF03709 OKR_DC_1_N: Orn/Lys/A 48.2 1.2E+02 0.0027 23.1 8.6 68 62-138 6-77 (115)
326 PLN02253 xanthoxin dehydrogena 47.8 1.1E+02 0.0023 26.8 8.1 74 47-124 15-91 (280)
327 PRK08306 dipicolinate synthase 47.5 1.5E+02 0.0033 26.8 9.1 96 178-276 2-118 (296)
328 PF13377 Peripla_BP_3: Peripla 47.5 71 0.0015 25.1 6.3 83 179-262 10-105 (160)
329 PRK00676 hemA glutamyl-tRNA re 47.3 44 0.00095 31.2 5.5 62 47-109 171-233 (338)
330 PF03698 UPF0180: Uncharacteri 47.3 32 0.0007 25.0 3.7 38 188-238 8-45 (80)
331 TIGR01728 SsuA_fam ABC transpo 46.6 68 0.0015 27.8 6.6 67 44-115 95-161 (288)
332 PRK05569 flavodoxin; Provision 46.5 1E+02 0.0022 24.1 7.0 24 226-249 46-78 (141)
333 PLN02891 IMP cyclohydrolase 46.4 2.5E+02 0.0054 28.0 10.6 134 103-249 24-179 (547)
334 cd03146 GAT1_Peptidase_E Type 46.4 1.4E+02 0.003 25.5 8.3 80 163-250 16-101 (212)
335 PLN02409 serine--glyoxylate am 46.2 60 0.0013 30.6 6.5 62 49-111 83-146 (401)
336 PF02670 DXP_reductoisom: 1-de 46.2 16 0.00035 29.0 2.2 98 133-248 9-112 (129)
337 PF07279 DUF1442: Protein of u 46.1 2E+02 0.0044 25.0 11.3 76 166-249 58-135 (218)
338 COG0698 RpiB Ribose 5-phosphat 46.1 1.7E+02 0.0036 24.0 9.8 114 51-173 1-122 (151)
339 TIGR02690 resist_ArsH arsenica 46.0 2E+02 0.0044 25.0 9.5 73 177-250 25-119 (219)
340 PF13377 Peripla_BP_3: Peripla 46.0 98 0.0021 24.2 6.9 75 63-138 29-107 (160)
341 cd06273 PBP1_GntR_like_1 This 46.0 67 0.0014 27.6 6.4 72 64-135 138-214 (268)
342 PRK03619 phosphoribosylformylg 45.9 1.4E+02 0.003 25.8 8.2 79 52-145 2-95 (219)
343 cd03129 GAT1_Peptidase_E_like 45.9 1.1E+02 0.0023 26.0 7.5 67 50-123 29-100 (210)
344 cd03466 Nitrogenase_NifN_2 Nit 45.9 2.8E+02 0.006 26.5 14.4 202 59-276 167-394 (429)
345 PRK13143 hisH imidazole glycer 45.8 1.4E+02 0.0029 25.3 8.1 78 51-143 1-86 (200)
346 cd06295 PBP1_CelR Ligand bindi 45.7 82 0.0018 27.2 6.9 75 64-138 146-225 (275)
347 PRK09426 methylmalonyl-CoA mut 45.5 63 0.0014 33.3 6.8 87 189-281 598-694 (714)
348 TIGR03264 met_CoM_red_C methyl 45.0 1.5E+02 0.0033 25.0 7.7 95 192-286 53-163 (194)
349 PF08759 DUF1792: Domain of un 45.0 94 0.002 27.2 6.8 95 105-206 93-195 (225)
350 PRK06463 fabG 3-ketoacyl-(acyl 44.9 1.2E+02 0.0027 26.0 7.9 70 46-123 3-75 (255)
351 cd03145 GAT1_cyanophycinase Ty 44.6 52 0.0011 28.4 5.3 71 49-123 28-103 (217)
352 PRK07792 fabG 3-ketoacyl-(acyl 44.6 1.7E+02 0.0037 26.2 9.0 79 42-123 4-86 (306)
353 COG1497 Predicted transcriptio 44.5 52 0.0011 29.2 5.2 63 130-204 190-252 (260)
354 PRK07053 glutamine amidotransf 44.4 1.6E+02 0.0034 25.8 8.4 92 50-156 2-105 (234)
355 PLN02306 hydroxypyruvate reduc 44.1 2.9E+02 0.0062 26.2 12.6 149 47-210 12-198 (386)
356 cd06313 PBP1_ABC_sugar_binding 44.0 1.3E+02 0.0029 26.0 8.1 47 92-138 173-219 (272)
357 cd01967 Nitrogenase_MoFe_alpha 43.8 2.8E+02 0.0061 26.0 10.8 138 61-211 174-319 (406)
358 COG2099 CobK Precorrin-6x redu 43.6 2.4E+02 0.0052 25.2 10.4 200 50-279 2-229 (257)
359 PF02310 B12-binding: B12 bind 43.5 69 0.0015 24.1 5.4 84 189-278 16-110 (121)
360 TIGR01457 HAD-SF-IIA-hyp2 HAD- 43.5 1.1E+02 0.0024 26.8 7.4 79 168-274 23-104 (249)
361 cd03145 GAT1_cyanophycinase Ty 43.3 87 0.0019 26.9 6.6 84 163-249 13-103 (217)
362 cd01966 Nitrogenase_NifN_1 Nit 43.3 2.6E+02 0.0056 26.7 10.4 192 61-275 172-381 (417)
363 cd06309 PBP1_YtfQ_like Peripla 43.2 2.1E+02 0.0046 24.6 9.2 47 93-139 175-225 (273)
364 cd01575 PBP1_GntR Ligand-bindi 43.2 1.4E+02 0.0031 25.3 8.1 45 93-137 168-215 (268)
365 PRK10653 D-ribose transporter 43.0 1.2E+02 0.0027 26.6 7.8 31 103-133 208-238 (295)
366 cd06288 PBP1_sucrose_transcrip 43.0 1.7E+02 0.0036 25.0 8.5 43 93-135 168-213 (269)
367 PRK02842 light-independent pro 43.0 3.1E+02 0.0066 26.2 12.3 147 50-209 166-322 (427)
368 COG0655 WrbA Multimeric flavod 43.0 47 0.001 28.2 4.8 27 220-246 67-100 (207)
369 cd06284 PBP1_LacI_like_6 Ligan 42.9 1E+02 0.0022 26.3 7.1 45 93-137 167-214 (267)
370 PRK02910 light-independent pro 42.7 1.3E+02 0.0029 29.6 8.5 51 28-82 275-326 (519)
371 PRK05565 fabG 3-ketoacyl-(acyl 42.7 1.2E+02 0.0026 25.6 7.4 33 47-79 2-35 (247)
372 cd06300 PBP1_ABC_sugar_binding 42.4 1.6E+02 0.0035 25.3 8.3 44 93-137 176-219 (272)
373 PRK01355 azoreductase; Reviewe 42.3 56 0.0012 27.6 5.1 56 193-248 26-104 (199)
374 PRK12748 3-ketoacyl-(acyl-carr 42.3 1.2E+02 0.0026 26.1 7.4 33 47-79 2-37 (256)
375 TIGR01737 FGAM_synth_I phospho 42.3 1.5E+02 0.0032 25.7 7.9 80 51-145 1-94 (227)
376 cd01422 MGS Methylglyoxal synt 42.2 77 0.0017 24.4 5.5 53 49-111 26-79 (115)
377 COG0436 Aspartate/tyrosine/aro 42.1 41 0.00089 31.9 4.7 60 50-113 113-174 (393)
378 PRK05282 (alpha)-aspartyl dipe 41.9 82 0.0018 27.7 6.2 75 165-249 18-99 (233)
379 TIGR01282 nifD nitrogenase mol 41.9 1.8E+02 0.0039 28.3 9.1 96 46-156 331-426 (466)
380 PRK08105 flavodoxin; Provision 41.8 1.2E+02 0.0027 24.3 6.9 66 63-138 20-94 (149)
381 PRK07453 protochlorophyllide o 41.8 2.6E+02 0.0056 25.1 10.1 73 48-124 4-80 (322)
382 PRK06398 aldose dehydrogenase; 41.8 1.3E+02 0.0029 26.0 7.6 33 47-79 3-36 (258)
383 cd06386 PBP1_NPR_C_like Ligand 41.5 2.3E+02 0.0049 26.4 9.6 59 190-251 157-218 (387)
384 COG2247 LytB Putative cell wal 41.5 1.1E+02 0.0023 28.4 6.9 54 152-207 52-106 (337)
385 cd06296 PBP1_CatR_like Ligand- 41.5 1E+02 0.0022 26.4 6.8 75 63-137 137-216 (270)
386 cd06323 PBP1_ribose_binding Pe 41.5 77 0.0017 27.1 6.0 35 102-136 181-215 (268)
387 PLN02572 UDP-sulfoquinovose sy 41.4 1.2E+02 0.0025 29.2 7.8 38 42-79 39-77 (442)
388 cd06298 PBP1_CcpA_like Ligand- 41.2 2.1E+02 0.0046 24.3 8.8 35 103-137 178-215 (268)
389 PLN03026 histidinol-phosphate 41.1 72 0.0016 29.8 6.2 61 49-113 126-186 (380)
390 PF04392 ABC_sub_bind: ABC tra 41.1 1.2E+02 0.0025 27.2 7.3 67 190-261 17-88 (294)
391 cd06350 PBP1_GPCR_family_C_lik 41.0 1.2E+02 0.0026 27.3 7.5 87 164-252 148-242 (348)
392 CHL00076 chlB photochlorophyll 41.0 3.7E+02 0.0079 26.5 16.8 141 60-211 180-339 (513)
393 PRK12359 flavodoxin FldB; Prov 40.9 1.5E+02 0.0033 24.6 7.4 70 56-135 8-86 (172)
394 PRK05784 phosphoribosylamine-- 40.8 3.2E+02 0.007 26.8 10.7 73 51-124 1-92 (486)
395 PRK09004 FMN-binding protein M 40.5 75 0.0016 25.5 5.4 61 63-136 20-90 (146)
396 COG1184 GCD2 Translation initi 40.4 43 0.00094 30.6 4.3 28 52-79 147-176 (301)
397 cd06301 PBP1_rhizopine_binding 40.3 62 0.0013 27.9 5.3 43 93-135 174-218 (272)
398 cd05212 NAD_bind_m-THF_DH_Cycl 40.2 53 0.0011 26.4 4.4 79 46-138 24-103 (140)
399 TIGR03566 FMN_reduc_MsuE FMN r 40.2 80 0.0017 25.9 5.7 42 71-112 29-78 (174)
400 cd06311 PBP1_ABC_sugar_binding 40.1 83 0.0018 27.2 6.1 50 93-143 176-226 (274)
401 PF03853 YjeF_N: YjeF-related 40.0 51 0.0011 27.2 4.4 36 176-211 23-62 (169)
402 PLN02778 3,5-epimerase/4-reduc 40.0 1.1E+02 0.0024 27.5 7.0 56 50-110 9-65 (298)
403 PRK10444 UMP phosphatase; Prov 40.0 84 0.0018 27.7 6.0 83 59-155 19-104 (248)
404 TIGR02069 cyanophycinase cyano 39.9 1.4E+02 0.003 26.5 7.4 83 164-249 13-102 (250)
405 PF02401 LYTB: LytB protein; 39.9 2.9E+02 0.0063 25.0 10.1 157 50-234 28-215 (281)
406 COG0826 Collagenase and relate 39.8 2.1E+02 0.0046 26.7 8.9 57 227-283 91-148 (347)
407 TIGR01182 eda Entner-Doudoroff 39.7 1.5E+02 0.0033 25.5 7.3 34 50-83 8-43 (204)
408 cd06533 Glyco_transf_WecG_TagA 39.6 2.1E+02 0.0047 23.5 8.7 118 131-262 7-133 (171)
409 KOG1610 Corticosteroid 11-beta 39.4 3.2E+02 0.0068 25.3 10.7 149 46-209 25-208 (322)
410 TIGR03590 PseG pseudaminic aci 39.4 2.8E+02 0.006 24.7 17.9 71 50-124 31-102 (279)
411 PRK05872 short chain dehydroge 39.2 2.8E+02 0.006 24.6 9.8 71 46-123 5-81 (296)
412 CHL00073 chlN photochlorophyll 39.0 1.1E+02 0.0024 29.8 7.1 93 47-145 311-408 (457)
413 cd06271 PBP1_AglR_RafR_like Li 38.9 1.3E+02 0.0027 25.7 7.0 45 93-137 172-219 (268)
414 COG2072 TrkA Predicted flavopr 38.8 48 0.001 31.9 4.7 46 25-78 158-203 (443)
415 cd06316 PBP1_ABC_sugar_binding 38.8 2.2E+02 0.0048 24.9 8.7 48 92-139 176-223 (294)
416 COG1663 LpxK Tetraacyldisaccha 38.7 52 0.0011 30.6 4.6 74 42-116 225-298 (336)
417 PRK12827 short chain dehydroge 38.7 1.6E+02 0.0034 24.9 7.5 89 48-136 4-97 (249)
418 cd06280 PBP1_LacI_like_4 Ligan 38.5 1.3E+02 0.0028 25.8 7.0 36 102-137 172-210 (263)
419 PRK06550 fabG 3-ketoacyl-(acyl 38.5 1.8E+02 0.0038 24.5 7.8 32 48-79 3-35 (235)
420 PRK06125 short chain dehydroge 38.4 1.9E+02 0.0041 24.8 8.1 33 47-79 4-37 (259)
421 PF02525 Flavodoxin_2: Flavodo 38.4 11 0.00023 31.8 0.0 56 191-247 22-104 (199)
422 COG0120 RpiA Ribose 5-phosphat 38.0 1.5E+02 0.0032 26.1 7.0 51 226-276 18-70 (227)
423 cd06333 PBP1_ABC-type_HAAT_lik 38.0 1.9E+02 0.0041 25.6 8.2 62 63-127 151-214 (312)
424 PRK12829 short chain dehydroge 37.9 1.4E+02 0.003 25.5 7.2 33 46-78 7-40 (264)
425 COG0075 Serine-pyruvate aminot 37.8 1.9E+02 0.004 27.6 8.2 61 173-235 75-138 (383)
426 cd06451 AGAT_like Alanine-glyo 37.7 91 0.002 28.4 6.2 61 49-111 73-133 (356)
427 PLN02369 ribose-phosphate pyro 37.7 3.2E+02 0.0069 24.9 18.4 211 46-282 34-264 (302)
428 cd01976 Nitrogenase_MoFe_alpha 37.4 3.4E+02 0.0073 25.9 10.2 98 46-158 296-393 (421)
429 cd06346 PBP1_ABC_ligand_bindin 37.4 2.9E+02 0.0064 24.5 9.4 76 50-127 137-218 (312)
430 PRK13479 2-aminoethylphosphona 37.4 1.1E+02 0.0023 28.2 6.6 63 49-112 79-141 (368)
431 cd06375 PBP1_mGluR_groupII Lig 37.3 1.4E+02 0.0031 28.6 7.7 86 164-251 162-256 (458)
432 PRK11921 metallo-beta-lactamas 37.3 89 0.0019 29.5 6.1 37 100-136 298-341 (394)
433 PRK07206 hypothetical protein; 37.1 3.6E+02 0.0077 25.3 10.3 30 50-79 2-31 (416)
434 PRK06490 glutamine amidotransf 37.1 2.8E+02 0.006 24.3 8.9 53 177-236 6-60 (239)
435 cd06274 PBP1_FruR Ligand bindi 36.9 1.8E+02 0.0038 24.9 7.6 36 102-137 178-216 (264)
436 TIGR02667 moaB_proteo molybden 36.9 1.1E+02 0.0023 25.2 5.8 50 61-114 23-75 (163)
437 PRK07060 short chain dehydroge 36.9 2E+02 0.0042 24.3 7.8 33 46-78 5-38 (245)
438 PF04273 DUF442: Putative phos 36.8 77 0.0017 24.4 4.6 62 51-112 29-97 (110)
439 PRK08063 enoyl-(acyl carrier p 36.8 1.7E+02 0.0038 24.7 7.5 31 48-78 2-33 (250)
440 PRK09271 flavodoxin; Provision 36.8 1.5E+02 0.0033 24.0 6.7 23 227-249 50-80 (160)
441 PTZ00075 Adenosylhomocysteinas 36.7 4.2E+02 0.0091 26.0 14.7 39 43-81 38-77 (476)
442 PRK13394 3-hydroxybutyrate deh 36.7 1.9E+02 0.0042 24.6 7.9 31 47-77 4-35 (262)
443 PRK10494 hypothetical protein; 36.7 1.2E+02 0.0026 27.0 6.6 76 50-126 121-202 (259)
444 PF04321 RmlD_sub_bind: RmlD s 36.6 26 0.00057 31.4 2.3 59 51-111 1-60 (286)
445 PF01993 MTD: methylene-5,6,7, 36.6 29 0.00062 30.7 2.4 53 227-282 58-118 (276)
446 PF01276 OKR_DC_1: Orn/Lys/Arg 36.6 75 0.0016 30.5 5.4 73 49-123 105-195 (417)
447 PRK13243 glyoxylate reductase; 36.5 3.4E+02 0.0075 25.0 10.9 172 50-237 2-213 (333)
448 PRK00676 hemA glutamyl-tRNA re 36.5 80 0.0017 29.4 5.5 58 177-236 173-234 (338)
449 PRK06841 short chain dehydroge 36.4 1.8E+02 0.004 24.7 7.7 83 47-135 12-98 (255)
450 PRK14476 nitrogenase molybdenu 36.4 4.1E+02 0.0088 25.7 16.1 193 60-276 182-393 (455)
451 cd01543 PBP1_XylR Ligand-bindi 36.3 1.7E+02 0.0037 25.1 7.4 46 92-137 161-209 (265)
452 PF01321 Creatinase_N: Creatin 36.3 1.4E+02 0.003 22.5 6.2 89 91-187 3-101 (132)
453 PRK08410 2-hydroxyacid dehydro 36.3 3.4E+02 0.0073 24.8 13.3 65 177-241 144-209 (311)
454 PRK04870 histidinol-phosphate 36.2 96 0.0021 28.4 6.1 61 49-113 104-164 (356)
455 PRK15452 putative protease; Pr 36.2 3.5E+02 0.0076 26.2 10.0 56 228-283 89-145 (443)
456 TIGR01754 flav_RNR ribonucleot 36.1 99 0.0021 24.3 5.4 34 100-136 48-89 (140)
457 PF13685 Fe-ADH_2: Iron-contai 35.7 1.2E+02 0.0027 26.9 6.4 41 165-207 8-52 (250)
458 PF12261 T_hemolysin: Thermost 35.6 54 0.0012 27.7 3.8 37 100-142 114-150 (179)
459 cd06367 PBP1_iGluR_NMDA N-term 35.5 2.7E+02 0.0059 25.3 9.0 65 62-127 153-220 (362)
460 PRK08993 2-deoxy-D-gluconate 3 35.3 2E+02 0.0043 24.7 7.7 71 47-123 7-81 (253)
461 cd06294 PBP1_ycjW_transcriptio 35.0 1.2E+02 0.0027 25.8 6.4 35 102-136 183-220 (270)
462 cd06267 PBP1_LacI_sugar_bindin 35.0 2.7E+02 0.0058 23.3 9.5 87 50-136 116-214 (264)
463 cd06334 PBP1_ABC_ligand_bindin 34.9 3.3E+02 0.0071 25.0 9.4 97 48-152 138-240 (351)
464 PF02502 LacAB_rpiB: Ribose/Ga 34.8 2.2E+02 0.0047 22.9 7.1 102 62-173 14-120 (140)
465 PRK13556 azoreductase; Provisi 34.8 1E+02 0.0022 26.1 5.7 24 226-249 87-117 (208)
466 cd00578 L-fuc_L-ara-isomerases 34.6 2.5E+02 0.0055 27.0 8.9 144 61-212 24-199 (452)
467 cd00615 Orn_deC_like Ornithine 34.5 1.7E+02 0.0037 26.1 7.3 30 177-208 98-127 (294)
468 cd06272 PBP1_hexuronate_repres 34.5 1.2E+02 0.0025 26.0 6.1 40 101-140 171-213 (261)
469 CHL00197 carA carbamoyl-phosph 34.5 4.1E+02 0.0089 25.2 10.1 86 49-145 191-280 (382)
470 cd06281 PBP1_LacI_like_5 Ligan 34.5 88 0.0019 26.9 5.3 43 93-135 167-212 (269)
471 PF02882 THF_DHG_CYH_C: Tetrah 34.5 1E+02 0.0022 25.4 5.3 57 46-112 32-89 (160)
472 PRK05723 flavodoxin; Provision 34.4 1.8E+02 0.0039 23.5 6.7 65 62-136 18-92 (151)
473 cd06364 PBP1_CaSR Ligand-bindi 34.4 1.9E+02 0.0042 28.3 8.1 86 164-251 175-268 (510)
474 PRK08912 hypothetical protein; 34.4 93 0.002 28.9 5.7 59 50-112 111-169 (387)
475 PRK02610 histidinol-phosphate 34.2 1.1E+02 0.0023 28.5 6.1 61 50-112 115-178 (374)
476 TIGR01752 flav_long flavodoxin 34.1 1.6E+02 0.0034 24.0 6.5 74 53-135 4-85 (167)
477 cd06167 LabA_like LabA_like pr 34.1 1.4E+02 0.0031 23.4 6.1 31 178-208 100-130 (149)
478 PRK02812 ribose-phosphate pyro 34.1 3.8E+02 0.0083 24.8 17.6 207 46-282 64-292 (330)
479 PRK07856 short chain dehydroge 34.1 2E+02 0.0043 24.6 7.5 32 47-78 3-35 (252)
480 TIGR00537 hemK_rel_arch HemK-r 33.9 1.1E+02 0.0023 25.2 5.4 48 166-213 121-169 (179)
481 cd06349 PBP1_ABC_ligand_bindin 33.7 3.4E+02 0.0073 24.3 9.3 105 164-272 122-234 (340)
482 KOG2882 p-Nitrophenyl phosphat 33.7 2.4E+02 0.0052 25.9 7.9 39 163-205 91-129 (306)
483 cd06303 PBP1_LuxPQ_Quorum_Sens 33.5 1E+02 0.0022 26.9 5.6 10 130-139 193-202 (280)
484 PRK06567 putative bifunctional 33.4 3.5E+02 0.0075 29.3 10.0 120 129-270 857-978 (1028)
485 cd06290 PBP1_LacI_like_9 Ligan 33.3 1.5E+02 0.0033 25.3 6.6 25 102-126 176-200 (265)
486 cd01541 PBP1_AraR Ligand-bindi 33.3 1.6E+02 0.0035 25.3 6.8 45 93-137 174-221 (273)
487 PRK07114 keto-hydroxyglutarate 33.2 3.3E+02 0.0071 23.7 10.5 33 51-83 16-50 (222)
488 PLN02409 serine--glyoxylate am 33.1 2.6E+02 0.0056 26.3 8.6 33 177-209 83-115 (401)
489 cd02068 radical_SAM_B12_BD B12 33.1 2.2E+02 0.0048 21.8 7.4 76 62-144 5-84 (127)
490 TIGR01279 DPOR_bchN light-inde 33.1 4E+02 0.0086 25.3 9.8 131 63-207 168-303 (407)
491 PRK10703 DNA-binding transcrip 33.1 1.4E+02 0.0031 26.8 6.7 74 64-137 199-277 (341)
492 COG0431 Predicted flavoprotein 33.0 1.4E+02 0.0031 24.9 6.1 82 180-261 2-107 (184)
493 PF05368 NmrA: NmrA-like famil 32.9 94 0.002 26.4 5.2 101 155-280 2-102 (233)
494 PRK12744 short chain dehydroge 32.8 2.6E+02 0.0057 23.9 8.1 76 47-123 5-85 (257)
495 cd06268 PBP1_ABC_transporter_L 32.8 2.9E+02 0.0063 23.4 8.4 25 102-126 190-215 (298)
496 cd00758 MoCF_BD MoCF_BD: molyb 32.8 71 0.0015 25.1 4.0 50 62-115 21-71 (133)
497 COG0800 Eda 2-keto-3-deoxy-6-p 32.7 1.4E+02 0.0031 25.8 6.0 37 50-86 13-51 (211)
498 COG0499 SAM1 S-adenosylhomocys 32.7 4.4E+02 0.0096 25.1 13.2 167 25-209 13-240 (420)
499 cd08187 BDH Butanol dehydrogen 32.6 1.3E+02 0.0029 28.2 6.5 73 163-241 16-100 (382)
500 COG0079 HisC Histidinol-phosph 32.5 1.1E+02 0.0024 28.5 5.9 58 50-113 99-156 (356)
No 1
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=3.8e-43 Score=313.03 Aligned_cols=233 Identities=20% Similarity=0.157 Sum_probs=203.1
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC
Q 023179 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP 127 (286)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~ 127 (286)
+.|++||||||.+++..+++.|+++|++++.+|++++++.++...+...+..+..||||||||+|||++|++.+.+.+.+
T Consensus 1 ~~g~~vlvTRp~~~~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~naV~~~~~~l~~~~~~ 80 (255)
T PRK05752 1 MSGWRLLLTRPAEECAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPAARLGLELLDRYWPQ 80 (255)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHHHHHHHHHHHhhCCC
Confidence 46899999999999999999999999999999999999988766777777778999999999999999999998776543
Q ss_pred --CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHh--cccC-CCCCCEEEEEcCCCChhHHHHHHHhCCC
Q 023179 128 --NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASE--LPKN-GKKKCTVLYPASAKASNEIEEGLSNRGF 202 (286)
Q Consensus 128 --~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~--L~~~-~~~~~rvL~~~g~~~~~~L~~~L~~~G~ 202 (286)
+.+++|||++|+++|+++ |+.++++|..+++++|++. +... ...+++||++||+.+++.|.+.|++.|+
T Consensus 81 ~~~~~~~aVG~~Ta~al~~~------G~~~~~~p~~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~r~~L~~~L~~~G~ 154 (255)
T PRK05752 81 PPQQPWFSVGAATAAILQDY------GLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGA 154 (255)
T ss_pred CcCCEEEEECHHHHHHHHHc------CCCcccCCCCCCcHHHHhChhhhccccCCCCEEEEEccCccHHHHHHHHHHCCC
Confidence 689999999999999999 9999998899999999876 3332 1367899999999999999999999999
Q ss_pred eeEEEEeeeeecCCCCcHHHHHH--cCCCCEEEEeChHHHHHHHHHhcccc--CCCceEEEeCHHHHHHHHHcCCCeEEe
Q 023179 203 EVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSWVNLISDTE--QWSNSVACIGETTASAAKRLGLKNVYY 278 (286)
Q Consensus 203 ~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~IvftS~sav~~~~~~~~~~~--~~~~~iv~IG~~Ta~~l~~~G~~~v~~ 278 (286)
+|.++++|++++.........+. .+.+|+|+|||++++++|++.++... ..+.+++|||++|+++++++|++++++
T Consensus 155 ~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ta~a~~~~G~~~~~~ 234 (255)
T PRK05752 155 SVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVSSGQGFEHLQQLAGADWPELARLPLFVPSPRVAEQARAAGAQTVVD 234 (255)
T ss_pred EEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEECCHHHHHHHHHHhChhHHHhcCceEEEeCHHHHHHHHHcCCCceee
Confidence 99999999998766554443333 25799999999999999999886532 235789999999999999999999999
Q ss_pred CCCCCCCC
Q 023179 279 PTHPGLEG 286 (286)
Q Consensus 279 ~~~ps~eg 286 (286)
++.|+.++
T Consensus 235 a~~~t~~~ 242 (255)
T PRK05752 235 CRGASAAA 242 (255)
T ss_pred CCCCChHH
Confidence 99998764
No 2
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=7.2e-43 Score=312.51 Aligned_cols=235 Identities=18% Similarity=0.198 Sum_probs=201.6
Q ss_pred cCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH
Q 023179 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (286)
Q Consensus 44 ~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~ 123 (286)
+..+|.|++||||||.+++..+.+.|++.|++++.+|++++++..+ ..+...+..+.+||||||||+|||++|+..+..
T Consensus 12 ~~~~l~g~~IlvTRp~~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~-~~~~~~l~~l~~~d~iiftS~NAV~~~~~~~~~ 90 (266)
T PRK08811 12 AATADAAWTLISLRPSGEHAPLRRAVARHGGRLLALSPWRLQRLDT-AQARDALRQALAAPIVVFTSPAAVRAAHRLLPL 90 (266)
T ss_pred CCcCCCCCEEEEeCCHHHHHHHHHHHHHCCCcEEEcCceeecCCCc-hhHHHHHhhcccCCEEEEECHHHHHHHHHHhcc
Confidence 3578999999999999999999999999999999999999998754 445566767889999999999999999865533
Q ss_pred cCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCe
Q 023179 124 AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFE 203 (286)
Q Consensus 124 ~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~ 203 (286)
.+..+.+++|||++|+++|+++ |+.++++|+++++|+|++. +.....+++||+++|+.+|++|.+.|+++|+.
T Consensus 91 ~~~~~~~~~AVG~~TA~aL~~~------G~~~~~~P~~~~se~Ll~l-~~~~~~g~~vLi~rg~~gr~~L~~~L~~~G~~ 163 (266)
T PRK08811 91 QRPARAHWLSVGEGTARALQAC------GIDEVVRPTRMDSEGLLAL-PLAQAPLQAVGLITAPGGRGLLAPTLQQRGAR 163 (266)
T ss_pred cCccCCeEEEECHHHHHHHHHc------CCCceeCCCCCCcHHHHhC-hhhhCCCCEEEEEeCCCcHHHHHHHHHHCCCE
Confidence 4456899999999999999999 9999999999999999876 22223678999999999999999999999999
Q ss_pred eEEEEeeeeecCCCCcHHHHH--HcCCCCEEEEeChHHHHHHHHHhcccc---CCCceEEEeCHHHHHHHHHcCCCeEEe
Q 023179 204 VVRLNTYTTEPVHHVDQTVLK--QALSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIGETTASAAKRLGLKNVYY 278 (286)
Q Consensus 204 V~~~~vY~~~~~~~~~~~~~~--~~~~~d~IvftS~sav~~~~~~~~~~~---~~~~~iv~IG~~Ta~~l~~~G~~~v~~ 278 (286)
|+++++|++++.+...+.... ....+|+++|||++++++|++.++... +.+..++|||++|+++++++|++++++
T Consensus 164 V~~~~vY~~~~~~~~~~~~~~l~~~~~~d~i~ftS~sav~~f~~~l~~~~~~~l~~~~~v~is~rtA~~a~~~G~~~v~v 243 (266)
T PRK08811 164 ILRADVYQRVPLRLRASTLAALSRAAPRSVLALSSAEALTLILQQLPDALRRALQQRPVVASSDRLLDAAHAAGFIHVMR 243 (266)
T ss_pred EeEEEEEeeeCCCCCHHHHHHHHHhCCCCEEEEChHHHHHHHHHHhhhhHHHHHhCCCEEEeCHHHHHHHHHcCCCceee
Confidence 999999999987654432211 125799999999999999999886531 236789999999999999999999999
Q ss_pred CCCCCCCC
Q 023179 279 PTHPGLEG 286 (286)
Q Consensus 279 ~~~ps~eg 286 (286)
++.|+.++
T Consensus 244 A~~~~~~~ 251 (266)
T PRK08811 244 AAGPLPAQ 251 (266)
T ss_pred CCCCCHHH
Confidence 99998764
No 3
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=100.00 E-value=7.9e-41 Score=296.94 Aligned_cols=227 Identities=34% Similarity=0.447 Sum_probs=205.0
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC--
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-- 127 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~-- 127 (286)
||+|||||+.++.+++...|++.|++++.+|++++.+..+ ++..+..+..||||+|||++||++|++.+...+.+
T Consensus 1 ~~~vlvtR~~~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~---l~~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~~~ 77 (248)
T COG1587 1 GMRVLVTRPREQAEELAALLRKAGAEPLELPLIEIEPLPD---LEVALEDLDSADWVVFTSPNAVRFFFEALKEQGLDAL 77 (248)
T ss_pred CcEEEEeCchhhhHHHHHHHHhCCCcceeecceeeecchh---HHHHHhccccCCEEEEECHHHHHHHHHHHHhhccccc
Confidence 6999999999999999999999999999999999998764 66667677779999999999999999999887653
Q ss_pred -CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEE
Q 023179 128 -NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (286)
Q Consensus 128 -~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~ 206 (286)
+.+++|||++|+++|+++ |+.++++|+.+++++|++.|+.....+++|++++|+.+++.|.+.|.++|++|.+
T Consensus 78 ~~~~i~aVG~~Ta~~l~~~------G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~r~~l~~~L~~~G~~v~~ 151 (248)
T COG1587 78 KNKKIAAVGEKTAEALRKL------GIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGGREVLEEKLEERGAEVRE 151 (248)
T ss_pred ccCeEEEEcHHHHHHHHHh------CCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCchHHHHHHHHhCCCEEEE
Confidence 899999999999999999 9999999999999999999998875579999999999999999999999999999
Q ss_pred EEeeeeecCCCCcHHHHH--HcCCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHHHHHHHHHcCCCeEEeCCC
Q 023179 207 LNTYTTEPVHHVDQTVLK--QALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTASAAKRLGLKNVYYPTH 281 (286)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~--~~~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~Ta~~l~~~G~~~v~~~~~ 281 (286)
+++|++++.....+.... ....+|+|+|||++++++|+..++.... .+.+++|||+.|++.++++|+++++.++.
T Consensus 152 ~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~v~~~~~~~~~~~~~~~~~~~v~~IG~~Ta~~l~~~G~~~~~~~~~ 231 (248)
T COG1587 152 VEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSSAVRALLALAPESGIEFLERKRVASIGPRTAETLKELGITVDIAAEK 231 (248)
T ss_pred EeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHHHHHHHHHHccccchhHhhCceEEEecHHHHHHHHHcCCcceecccc
Confidence 999999999987433222 2479999999999999999999987642 35899999999999999999999999988
Q ss_pred CCCC
Q 023179 282 PGLE 285 (286)
Q Consensus 282 ps~e 285 (286)
++.+
T Consensus 232 ~~~~ 235 (248)
T COG1587 232 PTLE 235 (248)
T ss_pred cchH
Confidence 8765
No 4
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=100.00 E-value=3.4e-40 Score=309.86 Aligned_cols=235 Identities=20% Similarity=0.216 Sum_probs=200.6
Q ss_pred cCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeCHHHHHHHHHHH
Q 023179 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAW 121 (286)
Q Consensus 44 ~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~--~~~d~IvFTS~~av~~~~~~l 121 (286)
..+||+|++|+|||+. ++..+++.|+++|++++.+|++++++..+...++..+..+ ..||||||||+|||++|++.+
T Consensus 5 ~~~pL~g~rIlvtr~~-~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ngv~~~~~~l 83 (381)
T PRK07239 5 DSAPLAGFTVGVTAAR-RAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIGFRGWVEAA 83 (381)
T ss_pred CCCCCCCcEEEEeccC-CHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHHHHHHHHHH
Confidence 3489999999999987 8999999999999999999999999987656666666554 579999999999999999988
Q ss_pred HHcCC--------CCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCC-----C
Q 023179 122 KEAGT--------PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASA-----K 188 (286)
Q Consensus 122 ~~~~~--------~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~-----~ 188 (286)
.+.+. .+.+++|||++|+++|+++ |+.++++|+.+++++|++.+......+++|+++++. .
T Consensus 84 ~~~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~~~~p~~~~~e~L~~~l~~~~~~g~~vli~~~~~~~~~~ 157 (381)
T PRK07239 84 DGWGLADELLEALSSARLLARGPKATGAIRAA------GLREEWSPASESSAEVLEYLLEEGVAGKRIAVQLHGATDEWE 157 (381)
T ss_pred HHcCChHHHHHHHcCCeEEEECccHHHHHHHc------CCCCccCCCCCccHHHHHHHhcCCCCCCEEEEEcCCCccccC
Confidence 77654 4889999999999999999 999999999999999999998765678999998766 3
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeecCCCCc--HHHHHHc--CCCCEEEEeChHHHHHHHHHhcccc---------CCCc
Q 023179 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE---------QWSN 255 (286)
Q Consensus 189 ~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~--~~~~~~~--~~~d~IvftS~sav~~~~~~~~~~~---------~~~~ 255 (286)
.++.|.+.|++.|++|.++++|++++..... ....+.+ +.+|+|+|||+++|++|++.+.... ..+.
T Consensus 158 ~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l~~~~~d~v~FtS~stv~~f~~~l~~~~~~~~~~~~~~~~~ 237 (381)
T PRK07239 158 PLPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAIASRGLDAVTFTSAPAVAALLERAREMGLLDQLLAALRTDV 237 (381)
T ss_pred chHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHHHcCCccEEEEcCHHHHHHHHHHHHHcCChHHHHHhhccCC
Confidence 4568999999999999999999998764432 2333333 4799999999999999999986531 1357
Q ss_pred eEEEeCHHHHHHHHHcCCCeEEeCCCCCCCC
Q 023179 256 SVACIGETTASAAKRLGLKNVYYPTHPGLEG 286 (286)
Q Consensus 256 ~iv~IG~~Ta~~l~~~G~~~v~~~~~ps~eg 286 (286)
+++||||.|+++|+++|+++ .+|++|+.+|
T Consensus 238 ~i~aIGp~Ta~al~~~G~~~-~vp~~~t~~~ 267 (381)
T PRK07239 238 LAACVGPVTAAPLVRAGVPT-SAPERMRLGA 267 (381)
T ss_pred EEEEECHHHHHHHHHcCCCc-cCCCCCCHHH
Confidence 89999999999999999997 5899998875
No 5
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=100.00 E-value=5.3e-40 Score=290.19 Aligned_cols=225 Identities=18% Similarity=0.146 Sum_probs=188.1
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CCCCc
Q 023179 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNV 129 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~-~~~~~ 129 (286)
|+||||||.+++..+.+.|+++|++++.+|++++.+.++ .....+ ...||||||||+|||++|.+..... .+.+.
T Consensus 1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~--~~~~~l--~~~~d~iifTS~naV~~~~~~~~~~~~~~~~ 76 (240)
T PRK09189 1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVA--AAFTAL--SEPHGAIAVTSAEAVRHLAALGERLLPHLAL 76 (240)
T ss_pred CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChh--hhhhhh--cCCcCEEEEECHHHHHHHHhcchhhHHhcCC
Confidence 689999999999999999999999999999999987642 122223 2468999999999999987642221 23478
Q ss_pred EEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEe
Q 023179 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 130 ~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~v 209 (286)
+++|||++|+++|+++ |+.. +.|..+++++|++.+......+++|||+||+.++++|.+.|+++|++|+++++
T Consensus 77 ~~~aVG~~Ta~~l~~~------G~~~-~~~~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~v 149 (240)
T PRK09189 77 PLFAVGEATAEAAREL------GFRH-VIEGGGDGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAEC 149 (240)
T ss_pred eEEEEcHHHHHHHHHc------CCCC-CcCCCCCHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEE
Confidence 9999999999999999 9984 56778999999998876544678999999999999999999999999999999
Q ss_pred eeeecCCCCcHHHHHHc--CCCCEEEEeChHHHHHHHHHhcccc--C--CCceEEEeCHHHHHHHHHcCCCeEEeCCCCC
Q 023179 210 YTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE--Q--WSNSVACIGETTASAAKRLGLKNVYYPTHPG 283 (286)
Q Consensus 210 Y~~~~~~~~~~~~~~~~--~~~d~IvftS~sav~~~~~~~~~~~--~--~~~~iv~IG~~Ta~~l~~~G~~~v~~~~~ps 283 (286)
|++++.+...+.+.+.+ ..+|+|+|||++++++|++.++... . .+.+++|||++|++++++.|+.++++++.|+
T Consensus 150 Y~~~~~~~~~~~~~~~l~~~~~d~i~f~S~~~~~~f~~~~~~~~~~~~l~~~~~v~Ig~~ta~al~~~~~~~~~ia~~~t 229 (240)
T PRK09189 150 YDMLPVMYSPATLSAILGGAPFDAVLLYSRVAARRFFALMRLSIAPPADEKTRFLCLSARVAAALPASLRAQALIAAMPD 229 (240)
T ss_pred EEeecCCCChHHHHHHHhcCCCCEEEEeCHHHHHHHHHHHhhhcCcccccccCeEEeCHHHHHHHhhccccceeecCCCC
Confidence 99998776654444332 5799999999999999999986431 2 2578999999999999998888888899999
Q ss_pred CCC
Q 023179 284 LEG 286 (286)
Q Consensus 284 ~eg 286 (286)
.|+
T Consensus 230 ~~~ 232 (240)
T PRK09189 230 EKS 232 (240)
T ss_pred HHH
Confidence 874
No 6
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=2.9e-39 Score=285.23 Aligned_cols=229 Identities=28% Similarity=0.359 Sum_probs=200.1
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc---CCC
Q 023179 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA---GTP 127 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~---~~~ 127 (286)
|+||+||+....+.+.+.|+++|++++.+|++++++.++... ...+..+..||+|||||++||+.|++.+.+. .+.
T Consensus 2 ~~ilitr~~~~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~-~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~~ 80 (249)
T PRK05928 2 MKILVTRPSPKAEELVELLRELGFVALHFPLIEIEPGRQLPQ-LAAQLAALGADWVIFTSKNAVEFLLSALKKKKLKWPK 80 (249)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCCEEEeccEEEecCCCcCh-HHHHhhCCCCCEEEEECHHHHHHHHHHHHhcCcCCCC
Confidence 899999999999999999999999999999999999875433 3444467899999999999999999988732 235
Q ss_pred CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 023179 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (286)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~ 207 (286)
+.+++|||++|+++|+++ |+.++++|+.++.+++++.|.+....|+++|++||..+++.|.+.|++.|++|.++
T Consensus 81 ~~~~~avG~~Ta~~l~~~------G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~ 154 (249)
T PRK05928 81 NKKYAAIGEKTALALKKL------GGKVVFVPEDGESSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVDEC 154 (249)
T ss_pred CCEEEEECHHHHHHHHHc------CCCccccCCCCcChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEeEE
Confidence 899999999999999999 99999999999999999999887456799999999999999999999999999999
Q ss_pred EeeeeecCCCCcHHHHHH--cCCCCEEEEeChHHHHHHHHHhcccc----CCCceEEEeCHHHHHHHHHcCCCeEEeCCC
Q 023179 208 NTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSWVNLISDTE----QWSNSVACIGETTASAAKRLGLKNVYYPTH 281 (286)
Q Consensus 208 ~vY~~~~~~~~~~~~~~~--~~~~d~IvftS~sav~~~~~~~~~~~----~~~~~iv~IG~~Ta~~l~~~G~~~v~~~~~ 281 (286)
++|++++.+......... ...+|+|+|||++++++|++.+.... ..+.+++|||++|+++++++|++++++|++
T Consensus 155 ~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS~~~v~~~~~~~~~~~~~~~~~~~~~~aiG~~Ta~~l~~~G~~~~~~~~~ 234 (249)
T PRK05928 155 EVYERVPPKLDGAELLARLQSGEVDAVIFTSPSTVRAFFSLAPELGRREWLLSCKAVVIGERTAEALRELGIKVIIVPDS 234 (249)
T ss_pred EEEEeeCCCCChHHHHHHHHhCCCCEEEECCHHHHHHHHHHhcccchhHHHhCCeEEEeCHHHHHHHHHcCCCcceecCC
Confidence 999999876544333332 25899999999999999999987643 126889999999999999999999999999
Q ss_pred CCCCC
Q 023179 282 PGLEG 286 (286)
Q Consensus 282 ps~eg 286 (286)
|+.+|
T Consensus 235 ~~~~~ 239 (249)
T PRK05928 235 ADNEA 239 (249)
T ss_pred CChHH
Confidence 98764
No 7
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=100.00 E-value=4.1e-37 Score=269.25 Aligned_cols=226 Identities=33% Similarity=0.457 Sum_probs=198.8
Q ss_pred EEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc---CCCCc
Q 023179 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA---GTPNV 129 (286)
Q Consensus 53 VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~---~~~~~ 129 (286)
||+||+....+.+.+.|+++|++++.+|+|++.+. +...+...+..+..+|+|||||+++|+.|++.+... .+.+.
T Consensus 1 iLi~r~~~~~~~l~~~L~~~G~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~iiftS~~av~~~~~~~~~~~~~~~~~~ 79 (239)
T cd06578 1 VLVTRPRPQADELAALLEALGAEVLELPLIEIEPL-DDAELDAALADLDEYDWLIFTSPNAVEAFFEALEELGLRALAGL 79 (239)
T ss_pred CEecCchHHhHHHHHHHHHcCCcEEEeeeEEEecC-ChHHHHHHHHhcCCCCEEEEECHHHHHHHHHHHHhhCCccccCC
Confidence 69999999999999999999999999999999987 545566666667789999999999999999988764 45799
Q ss_pred EEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEe
Q 023179 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 130 ~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~v 209 (286)
+++|||++|+++|++. |+.+++.|+.+++++|++.|.+....++++++++|+..+..|.+.|+++|++|.++++
T Consensus 80 ~~~avG~~Ta~~l~~~------g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~ 153 (239)
T cd06578 80 KIAAVGPKTAEALREA------GLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEVEV 153 (239)
T ss_pred EEEEECHHHHHHHHHc------CCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEE
Confidence 9999999999999999 9999998889999999999998745779999999999999999999999999999999
Q ss_pred eeeecCCCCcHHHHHH--cCCCCEEEEeChHHHHHHHHHhccc---cCCCceEEEeCHHHHHHHHHcCCCeEEeCCCCCC
Q 023179 210 YTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSWVNLISDT---EQWSNSVACIGETTASAAKRLGLKNVYYPTHPGL 284 (286)
Q Consensus 210 Y~~~~~~~~~~~~~~~--~~~~d~IvftS~sav~~~~~~~~~~---~~~~~~iv~IG~~Ta~~l~~~G~~~v~~~~~ps~ 284 (286)
|++++.+.. ++..+. ...+|+|+|||+++++.|++.+.+. ...+.+++|||++|+++|+++|++++++++.|+.
T Consensus 154 Y~~~~~~~~-~~~~~~l~~~~~~~iiftS~~~v~~f~~~~~~~~~~~~~~~~~~aig~~t~~~l~~~g~~~~~~~~~~~~ 232 (239)
T cd06578 154 YRTVPPDLD-AELLELLEEGAIDAVLFTSPSTVRNLLELLGKEGRALLKNVKIAAIGPRTAEALRELGLKVVIVAESPTL 232 (239)
T ss_pred EEEECCCCc-HHHHHHHHcCCCcEEEEeCHHHHHHHHHHHhhhhhhhhcCCeEEEECHHHHHHHHHcCCCceeeecCCCh
Confidence 999988754 222222 2467899999999999999999763 2347999999999999999999999999999987
Q ss_pred CC
Q 023179 285 EG 286 (286)
Q Consensus 285 eg 286 (286)
+|
T Consensus 233 ~~ 234 (239)
T cd06578 233 EA 234 (239)
T ss_pred HH
Confidence 64
No 8
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=100.00 E-value=1.2e-38 Score=279.15 Aligned_cols=216 Identities=30% Similarity=0.427 Sum_probs=184.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC--CccEEEEeCHHHHHHHHHHHHHcC-----CCCcEEEEEC
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWIIITSPEAGSVFLEAWKEAG-----TPNVRIGVVG 135 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~--~~d~IvFTS~~av~~~~~~l~~~~-----~~~~~i~aVG 135 (286)
+++++.|+++|++++.+|++++++..+...+...++.+. .||+|||||++||++|++.+...+ +.+.+++|||
T Consensus 1 ~~l~~~l~~~G~~~~~~P~i~~~~~~~~~~l~~~l~~l~~~~~d~viftS~~av~~~~~~l~~~~~~~~~~~~~~i~avG 80 (231)
T PF02602_consen 1 SELAALLRALGAEVIELPLIEIEPLPDLASLEAALEQLPPGNYDWVIFTSPNAVRAFFKALQSAGADLRLLKNIKIFAVG 80 (231)
T ss_dssp -HHHHHHHHTTEEEEEEESEEEEECCHHHHHHHHHHHHTGCCSSEEEESSHHHHHHHHHHHHHTTHHHHHHHHSEEEESS
T ss_pred CHHHHHHHHCCCcEEEECCEEEEeCCCHHHHHHHHHhcccCCCCEEEEECHHHHHHHHHHHhhhhhhhhhccCCeEEEEc
Confidence 468999999999999999999999776677777776665 999999999999999999887332 2489999999
Q ss_pred hhhHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 136 AGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
++|+++|+++ |+.++++|. .+++++|++.|.+.. .++|+||++|+.++++|.+.|++.|++|.+++||++ .
T Consensus 81 ~~Ta~~l~~~------G~~~~~~~~~~~~s~~L~~~l~~~~-~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~-~ 152 (231)
T PF02602_consen 81 PKTAEALREY------GFQPDFVPSSEGSSEGLAELLKEQL-RGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYET-P 152 (231)
T ss_dssp HHHHHHHHHT------T-EECEE-TTSSSHHHHHGGHHHCC-TTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEE-E
T ss_pred HHHHHHHHHc------CCCccccCCCCCCHHHHHHHHHhhC-CCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeec-c
Confidence 9999999999 999998887 889999999888754 458999999999999999999999999999999999 4
Q ss_pred CCCCcHHHHHHc--CCCCEEEEeChHHHHHHHHHhccc--cCCCceEEEeCHHHHHHHHHcCCCeEEeCCCCCCCC
Q 023179 215 VHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDT--EQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 286 (286)
Q Consensus 215 ~~~~~~~~~~~~--~~~d~IvftS~sav~~~~~~~~~~--~~~~~~iv~IG~~Ta~~l~~~G~~~v~~~~~ps~eg 286 (286)
......+..+.+ ..+|+|+|||+++++.|++.+++. ...+.+++|||++|+++++++|++++++|++|+.+|
T Consensus 153 ~~~~~~~~~~~l~~~~~~~v~ftS~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ta~~l~~~g~~~~~va~~~~~~~ 228 (231)
T PF02602_consen 153 PEELSPELKEALDRGEIDAVVFTSPSAVRAFLELLKKNGALLKRVPIVAIGPRTAKALRELGFKVDIVAERPTIEA 228 (231)
T ss_dssp EHHHHHHHHHHHHHTTTSEEEESSHHHHHHHHHHSSGHHHHHTTSEEEESSHHHHHHHHHTT-SCSEEESSSSHHH
T ss_pred cccchHHHHHHHHcCCCCEEEECCHHHHHHHHHHhHhhhhhhhCCEEEEECHHHHHHHHHcCCCceEECCCCChhH
Confidence 443333334333 689999999999999999999864 234799999999999999999999999999998764
No 9
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=100.00 E-value=6.1e-37 Score=303.99 Aligned_cols=230 Identities=21% Similarity=0.214 Sum_probs=194.7
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCC
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPN 128 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~ 128 (286)
.+++||||||.+++..+++.|+++|++++.+|++++++..+...+...+..+..||||||||+|||++|++.+...+..+
T Consensus 2 ~~~~VLVTRp~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l~~~~~~~ 81 (656)
T PRK06975 2 RAFTVVVTRPDGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLDAIWPHA 81 (656)
T ss_pred CCCEEEEeCcHhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHHHhhCccC
Confidence 47999999999999999999999999999999999999877667778887889999999999999999999887766678
Q ss_pred cEEEEEChhhHHHHHHhhhccCCCCceecc------------CCCCCHHHHHHhcccCC--CCCCEEEEEcCCCChhHHH
Q 023179 129 VRIGVVGAGTASIFEEVIQSSKCSLDVAFS------------PSKATGKILASELPKNG--KKKCTVLYPASAKASNEIE 194 (286)
Q Consensus 129 ~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~------------~~~~~~e~L~~~L~~~~--~~~~rvL~~~g~~~~~~L~ 194 (286)
++++|||++|+++|+++ |+.++++ |+.+++|+|++.+.... ..+++|||+||+.+++.|.
T Consensus 82 ~~i~AVG~~Ta~aL~~~------Gi~~~~~~~~~P~~~~~~p~~~~~se~Ll~~l~~~~~~~~g~rVLi~rG~~gr~~L~ 155 (656)
T PRK06975 82 LPVAVVGPGSVAALARH------GIAAPAHRVIAPDAPADGGEARYDSEALFAEIDAAFGALAGKRVLIVRGDGGREWLA 155 (656)
T ss_pred CeEEEECHHHHHHHHHc------CCCCceeeccccccccCCCCCccchHHHHHhHHHhccCCCCCEEEEEcCCCCcHHHH
Confidence 99999999999999999 9998876 45689999999998754 4789999999999999999
Q ss_pred HHHHhCCCeeEEEEeeeeecCCCCcH--HHHHH-c-CCCCEEEEeChHHHHHHHHHhcc----cc---CCCceEEEeCHH
Q 023179 195 EGLSNRGFEVVRLNTYTTEPVHHVDQ--TVLKQ-A-LSIPVVAVASPSAVRSWVNLISD----TE---QWSNSVACIGET 263 (286)
Q Consensus 195 ~~L~~~G~~V~~~~vY~~~~~~~~~~--~~~~~-~-~~~d~IvftS~sav~~~~~~~~~----~~---~~~~~iv~IG~~ 263 (286)
+.|+++|+.|++++||++........ ..+.. + +.+|+|+|||++++++|++.... .. +.+.+++|||++
T Consensus 156 ~~L~~~Ga~V~~v~vY~~~~~~~~~~~~~~~~~~l~~~idav~fTS~s~v~~f~~la~~~l~~~~~~~l~~~~ivaIgpr 235 (656)
T PRK06975 156 ERLREAGAEVELVEAYRRVVPEPSIGAWERVHALLSGAPHAWLLTSSEAVRNLDELARAHLNPAEIDALKHAPLVAPHAR 235 (656)
T ss_pred HHHHHCCCEEEEEeEEEeeCCCcchhHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhhcCHHHHHHHhCCeEEEeCHH
Confidence 99999999999999999864432221 11221 2 46999999999999999998432 11 236789999999
Q ss_pred HHHHHHHcCCCeEEeCCCCCCC
Q 023179 264 TASAAKRLGLKNVYYPTHPGLE 285 (286)
Q Consensus 264 Ta~~l~~~G~~~v~~~~~ps~e 285 (286)
|++.++++||++++ +..++.+
T Consensus 236 tA~~a~~~G~~~i~-~a~~~~e 256 (656)
T PRK06975 236 IAEQARALGFDRIT-LTGAGDE 256 (656)
T ss_pred HHHHHHHcCCCeee-cCCCChH
Confidence 99999999999865 4555543
No 10
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=100.00 E-value=4e-34 Score=273.57 Aligned_cols=215 Identities=11% Similarity=0.118 Sum_probs=179.8
Q ss_pred CCCCCCCCccccccccccccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCcc
Q 023179 25 NRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFD 104 (286)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d 104 (286)
-+++|++++|++. +||+|++|||||+.++...+.+.|+++|++++.+|+++..+.+.. ++.++++..||
T Consensus 234 vv~~~~~~~~~~~--------~PL~G~~IlVtR~~~q~~~l~~~L~~~GA~v~~~P~i~~~~~~~~---~~~l~~l~~yd 302 (474)
T PRK07168 234 VVSLRNQIAWKER--------KPLHGKKVLFTSATNKTSVMKQKLQEAGAEIYQIPTFKKEEYTLT---LEQINEIFNVN 302 (474)
T ss_pred Hhccccccchhhc--------ccccCceEEeeccHHHHHHHHHHHHHcCCEEEEeccEEeeCCCCc---HHHHHHhccCC
Confidence 3678899999999 999999999999999999999999999999999999998754422 35566778899
Q ss_pred EEEEeCHHHHHHHHHHHHHcCCC----CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCE
Q 023179 105 WIIITSPEAGSVFLEAWKEAGTP----NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT 180 (286)
Q Consensus 105 ~IvFTS~~av~~~~~~l~~~~~~----~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~r 180 (286)
||||||+|||+.|++.+.+.++| ..+|+|||++|+++|+++ |+.++ |+.++++++++. ... . +|
T Consensus 303 wlvFTS~ngV~~Ff~~l~~~~~D~R~l~~kiaavG~~Ta~aL~~~------Gl~~d--p~~~~~e~~l~~-g~~--~-~~ 370 (474)
T PRK07168 303 RLVFCSAESVEILMQSCSKYKKDIRSLQAELQHMNVATQEKLMQY------GLLSK--EAKFSSDTTVYL-GRN--I-NR 370 (474)
T ss_pred EEEEcCHHHHHHHHHHHHHcCCChHHhCCEEEEECHHHHHHHHhC------CCccC--CcccccceeEEe-ccc--c-cc
Confidence 99999999999999999998875 489999999999999999 99985 889999998755 221 2 79
Q ss_pred EEEEcCCCChhHHHHHHHhCCCe-eEEEEeee--eecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhcccc---CCC
Q 023179 181 VLYPASAKASNEIEEGLSNRGFE-VVRLNTYT--TEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTE---QWS 254 (286)
Q Consensus 181 vL~~~g~~~~~~L~~~L~~~G~~-V~~~~vY~--~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~---~~~ 254 (286)
+++++++ .|+. |.+.+.|+ ++...... ..+.+ ..+|+|+|||+++|++|++.+...+ ...
T Consensus 371 vl~~~~~------------~g~~~~~~~~~y~~~~~~~~~~~-~~l~e-~~~d~iiFtS~ssV~~f~~~~~~~~~~~~~~ 436 (474)
T PRK07168 371 IAFIQEK------------IGAGSYMMTHKYTIDHRFDEVHS-RMLSE-FLWDSIVFEGRASIDTFLAEVKRLGFIDIVT 436 (474)
T ss_pred eeecccC------------CCCceEEEEEEeeccccccchhh-hHHhh-ccCceEEECCHHHHHHHHHHHHhhCchhhcc
Confidence 9999976 5666 99999999 55533222 22222 2489999999999999999986543 136
Q ss_pred ceEEEeCHHHHHHHHHcCCCeE
Q 023179 255 NSVACIGETTASAAKRLGLKNV 276 (286)
Q Consensus 255 ~~iv~IG~~Ta~~l~~~G~~~v 276 (286)
++++||||.|+++|.++|++++
T Consensus 437 ~~~~~iGp~t~~~a~~~G~~~~ 458 (474)
T PRK07168 437 LPFSYTDVPTLHYANKVGFHNI 458 (474)
T ss_pred CceEEeCHHHHHHHHHhCCCcc
Confidence 8899999999999999999875
No 11
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=99.98 E-value=5.2e-31 Score=222.03 Aligned_cols=228 Identities=19% Similarity=0.225 Sum_probs=195.9
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-----
Q 023179 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA----- 124 (286)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~----- 124 (286)
.+|++..... ..+.+.+.|+++|++++.+|++++.... .+++.+.|+...+|-.||||||..|+.+-+.+...
T Consensus 4 ~~vlllK~~s~~~D~Y~~~l~~~~~epifIP~l~f~f~~-l~~lr~kL~~p~kY~giIfTSpR~VEa~~eaL~q~~tel~ 82 (260)
T KOG4132|consen 4 VTVLLLKNKSVPIDPYEEELRSYGLEPIFIPVLSFTFVN-LQQLRAKLNNPPKYAGIIFTSPRCVEALNEALIQTETELK 82 (260)
T ss_pred eeEEEecCCCCCCCHHHHHHHhcCCCceeecceeeeecc-HHHHHHHhcCchhhceeEEeChHHHHHHHHHhccccchhh
Confidence 4677776655 6789999999999999999999999875 57888999888899999999999999998888732
Q ss_pred -CCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCC--CCCEEEEEcCCCChhHHHHHHHhCC
Q 023179 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYPASAKASNEIEEGLSNRG 201 (286)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~--~~~rvL~~~g~~~~~~L~~~L~~~G 201 (286)
.|....+|+||+.|...++.. |+.....-.-.+++.|++.|.++.. +..++|+++|+..|+.|+.+|.+.|
T Consensus 83 ~~w~a~~vYtVG~aT~~si~~~------~~l~T~Ge~~gNa~~LaD~Ive~~~~~~alPLLfpcGn~~rdil~kkL~~~G 156 (260)
T KOG4132|consen 83 AAWLAKHVYTVGPATHASIRRL------GFLNTHGEDAGNAEILADLIVETFTDKRALPLLFPCGNLRRDILPKKLHDKG 156 (260)
T ss_pred hHHhhcceeeeccccHHHHHHh------cCccccccccccHHHHhHhhhhcCCCcccCceEEEcccchhHHHHHHHHhCC
Confidence 235789999999999999998 7665454345789999999988642 5568999999999999999999999
Q ss_pred CeeEEEEeeeeecCCCCcHHHHHHc---CCCCEEEEeChHHHHHHHHHhcccc--CCCceEEEeCHHHHHHHHHcCCCeE
Q 023179 202 FEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVASPSAVRSWVNLISDTE--QWSNSVACIGETTASAAKRLGLKNV 276 (286)
Q Consensus 202 ~~V~~~~vY~~~~~~~~~~~~~~~~---~~~d~IvftS~sav~~~~~~~~~~~--~~~~~iv~IG~~Ta~~l~~~G~~~v 276 (286)
+.|+.+.||+++..++...++...+ +.+|+|+|+||++++...+.+.... ..+.++++|||+|+++|++.|.++.
T Consensus 157 ~~Vds~~VY~T~~hp~~~~~~~~alk~~~~~d~ivfFSPsgv~~~lq~f~~~~~s~~~~k~aaIGPtT~kaL~~~g~~~~ 236 (260)
T KOG4132|consen 157 IRVDSCEVYETREHPDGFKQFIHALKECGFIDWIVFFSPSGVKSSLQYFGDSNRSGDHLKLAAIGPTTRKALEDLGVKVD 236 (260)
T ss_pred ceeeEEEEEeeeecccHHHHHHHHHHhcCCcceEEEECcchHHHHHHHHHHhccchhheeEEEeCcchHHHHHHcCCCcc
Confidence 9999999999999998776655443 5799999999999999999988754 2368999999999999999999999
Q ss_pred EeCCCCCCC
Q 023179 277 YYPTHPGLE 285 (286)
Q Consensus 277 ~~~~~ps~e 285 (286)
++++.|+.|
T Consensus 237 ~vs~~P~pe 245 (260)
T KOG4132|consen 237 VVSPAPDPE 245 (260)
T ss_pred eecCCCCHH
Confidence 999999875
No 12
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=99.66 E-value=1.1e-15 Score=134.67 Aligned_cols=120 Identities=22% Similarity=0.244 Sum_probs=102.8
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC-
Q 023179 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG- 125 (286)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~- 125 (286)
+.|++||++|+....+.+.+.|+++|+.+..+|+|++.+..+. ......+ ....+|+|+|||+++|+.|++.+...+
T Consensus 123 ~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~-~~~~~d~ivftS~~~v~~~~~~~~~~~~ 201 (249)
T PRK05928 123 LKGKRVLYLRGNGGREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARL-QSGEVDAVIFTSPSTVRAFFSLAPELGR 201 (249)
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHH-HhCCCCEEEECCHHHHHHHHHHhcccch
Confidence 5799999999999999999999999999999999999876532 2222333 136899999999999999999887654
Q ss_pred ---CCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC
Q 023179 126 ---TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (286)
Q Consensus 126 ---~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~ 174 (286)
..+.+++|||+.|+++|+++ |+.++++|++++.++|++.|.+.
T Consensus 202 ~~~~~~~~~~aiG~~Ta~~l~~~------G~~~~~~~~~~~~~~l~~~l~~~ 247 (249)
T PRK05928 202 REWLLSCKAVVIGERTAEALREL------GIKVIIVPDSADNEALLRALKEL 247 (249)
T ss_pred hHHHhCCeEEEeCHHHHHHHHHc------CCCcceecCCCChHHHHHHHHHh
Confidence 34889999999999999999 99999999999999999888654
No 13
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=99.63 E-value=7.3e-15 Score=128.26 Aligned_cols=118 Identities=21% Similarity=0.269 Sum_probs=103.3
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc--
Q 023179 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (286)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~-- 124 (286)
.+.+++|+++|+......+.+.|+++|+++..+|+|+.++.++.+...+.+ ....+|+|+|||+++|+.|++.+.+.
T Consensus 119 ~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~l-~~~~~~~iiftS~~~v~~f~~~~~~~~~ 197 (239)
T cd06578 119 DGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPDLDAELLELL-EEGAIDAVLFTSPSTVRNLLELLGKEGR 197 (239)
T ss_pred CCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCCCcHHHHHHH-HcCCCcEEEEeCHHHHHHHHHHHhhhhh
Confidence 367999999999988899999999999999999999999876555556666 34578899999999999999988764
Q ss_pred -CCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhc
Q 023179 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (286)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L 171 (286)
.+.+.+++|||+.|++.|++. |++++++++.++.++|++.|
T Consensus 198 ~~~~~~~~~aig~~t~~~l~~~------g~~~~~~~~~~~~~~l~~~i 239 (239)
T cd06578 198 ALLKNVKIAAIGPRTAEALREL------GLKVVIVAESPTLEALLEAL 239 (239)
T ss_pred hhhcCCeEEEECHHHHHHHHHc------CCCceeeecCCChHHHHhhC
Confidence 356899999999999999999 99999999999999998754
No 14
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=99.55 E-value=7.4e-14 Score=131.42 Aligned_cols=121 Identities=21% Similarity=0.269 Sum_probs=99.1
Q ss_pred CCCCCeEEEeCCC-----CchHHHHHHHHhCCCcEEEeceEEeeeCCCch---HHHHHHhcCCCccEEEEeCHHHHHHHH
Q 023179 47 SNSNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNADTIFDWIIITSPEAGSVFL 118 (286)
Q Consensus 47 ~l~g~~VLitR~~-----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~---~l~~~l~~~~~~d~IvFTS~~av~~~~ 118 (286)
...|++|++.+.. ...+.|.+.|++.|+.|..+|+|++++..+.+ .+...+ ..+.+|+|+|||+++|+.|+
T Consensus 139 ~~~g~~vli~~~~~~~~~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~l-~~~~~d~v~FtS~stv~~f~ 217 (381)
T PRK07239 139 GVAGKRIAVQLHGATDEWEPLPEFLEALRAAGAEVVPVPVYRWVPPPDPGPLDRLVDAI-ASRGLDAVTFTSAPAVAALL 217 (381)
T ss_pred CCCCCEEEEEcCCCccccCchHHHHHHHHHCCCEEEEeCcEEEcCCCChhHHHHHHHHH-HcCCccEEEEcCHHHHHHHH
Confidence 4679999998765 33468999999999999999999998654322 334444 23579999999999999999
Q ss_pred HHHHHcCC---------CCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC
Q 023179 119 EAWKEAGT---------PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (286)
Q Consensus 119 ~~l~~~~~---------~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~ 175 (286)
+.+...+. .+++++|||+.|+++|+++ |+.+ .+|+.++.++|++.|.+..
T Consensus 218 ~~l~~~~~~~~~~~~~~~~~~i~aIGp~Ta~al~~~------G~~~-~vp~~~t~~~Lv~~i~~~~ 276 (381)
T PRK07239 218 ERAREMGLLDQLLAALRTDVLAACVGPVTAAPLVRA------GVPT-SAPERMRLGALARHITEEL 276 (381)
T ss_pred HHHHHcCChHHHHHhhccCCEEEEECHHHHHHHHHc------CCCc-cCCCCCCHHHHHHHHHHHh
Confidence 98876432 4678999999999999999 9998 5799999999999997653
No 15
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=99.53 E-value=1.2e-13 Score=123.15 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=102.5
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc--C
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA--G 125 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~--~ 125 (286)
.|++||++|+....+.|.+.|++.|+.|..+++|+..+... .+.+.+.+ ..+.+|+|+|||+++++.|++.+... .
T Consensus 129 ~~~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~-~~~~~d~v~ftS~~~~~~~~~~~~~~~~~ 207 (255)
T PRK05752 129 PDPRVLIMRGEGGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRV-EAERLNGLVVSSGQGFEHLQQLAGADWPE 207 (255)
T ss_pred CCCEEEEEccCccHHHHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHH-HhCCCCEEEECCHHHHHHHHHHhChhHHH
Confidence 58899999999999999999999999999999999876543 34455555 34679999999999999999877542 2
Q ss_pred CCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC
Q 023179 126 TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (286)
Q Consensus 126 ~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~ 175 (286)
+.+.+++|||+.|++++++. |+.++.+++.++.++|++.|.+..
T Consensus 208 ~~~~~~~~ig~~ta~a~~~~------G~~~~~~a~~~t~~~L~~al~~~~ 251 (255)
T PRK05752 208 LARLPLFVPSPRVAEQARAA------GAQTVVDCRGASAAALLAALRRQA 251 (255)
T ss_pred hcCceEEEeCHHHHHHHHHc------CCCceeeCCCCChHHHHHHHHhcc
Confidence 45789999999999999999 999888888999999999987653
No 16
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=99.52 E-value=1.6e-13 Score=116.48 Aligned_cols=131 Identities=15% Similarity=0.236 Sum_probs=112.3
Q ss_pred cccccccccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeCHHHH
Q 023179 36 QASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAG 114 (286)
Q Consensus 36 ~~~~~~~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~~~~~d~IvFTS~~av 114 (286)
+.+++++..++. .-.|.+.+....+.|.++|.+.|+.|..+-+|+++..+|. .++..+++.-+..|||+|.||+++
T Consensus 122 D~Ive~~~~~~a---lPLLfpcGn~~rdil~kkL~~~G~~Vds~~VY~T~~hp~~~~~~~~alk~~~~~d~ivfFSPsgv 198 (260)
T KOG4132|consen 122 DLIVETFTDKRA---LPLLFPCGNLRRDILPKKLHDKGIRVDSCEVYETREHPDGFKQFIHALKECGFIDWIVFFSPSGV 198 (260)
T ss_pred HhhhhcCCCccc---CceEEEcccchhHHHHHHHHhCCceeeEEEEEeeeecccHHHHHHHHHHhcCCcceEEEECcchH
Confidence 344444333333 3488999999999999999999999999999999999874 578888866678999999999999
Q ss_pred HHHHHHHHHcC--CCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC
Q 023179 115 SVFLEAWKEAG--TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (286)
Q Consensus 115 ~~~~~~l~~~~--~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~ 175 (286)
....+++.... .++.++++||+.|+++|++. |++++.+.+.++.+.|+..|...+
T Consensus 199 ~~~lq~f~~~~~s~~~~k~aaIGPtT~kaL~~~------g~~~~~vs~~P~pe~L~~~I~~~~ 255 (260)
T KOG4132|consen 199 KSSLQYFGDSNRSGDHLKLAAIGPTTRKALEDL------GVKVDVVSPAPDPESLADAIELYQ 255 (260)
T ss_pred HHHHHHHHHhccchhheeEEEeCcchHHHHHHc------CCCcceecCCCCHHHHHHHHHhhh
Confidence 99999998764 36999999999999999999 999999999999999999887654
No 17
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=99.50 E-value=2.8e-14 Score=124.73 Aligned_cols=116 Identities=23% Similarity=0.287 Sum_probs=98.4
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc--
Q 023179 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (286)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~-- 124 (286)
.+.+++||+.|+....+.|.+.|+++|++|..+++|+....+....+.+.+ ....+|+|+|||+++++.|++.+.+.
T Consensus 114 ~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l-~~~~~~~v~ftS~~~~~~~~~~~~~~~~ 192 (231)
T PF02602_consen 114 QLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYETPPEELSPELKEAL-DRGEIDAVVFTSPSAVRAFLELLKKNGA 192 (231)
T ss_dssp CCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHH-HHTTTSEEEESSHHHHHHHHHHSSGHHH
T ss_pred hCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHH-HcCCCCEEEECCHHHHHHHHHHhHhhhh
Confidence 456789999999999999999999999999999999992222234555556 33789999999999999999987654
Q ss_pred CCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHH
Q 023179 125 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILAS 169 (286)
Q Consensus 125 ~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~ 169 (286)
.+.+.+++|+|+.|+++|++. |+++++++++++.++|++
T Consensus 193 ~~~~~~~~~ig~~ta~~l~~~------g~~~~~va~~~~~~~lv~ 231 (231)
T PF02602_consen 193 LLKRVPIVAIGPRTAKALREL------GFKVDIVAERPTIEALVE 231 (231)
T ss_dssp HHTTSEEEESSHHHHHHHHHT------T-SCSEEESSSSHHHHHH
T ss_pred hhhCCEEEEECHHHHHHHHHc------CCCceEECCCCChhHhhC
Confidence 457999999999999999999 999999999999999874
No 18
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=99.49 E-value=4.3e-13 Score=118.43 Aligned_cols=117 Identities=17% Similarity=0.121 Sum_probs=97.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc---
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA--- 124 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~--- 124 (286)
.|++||+.|+....+.|.+.|+++|+.+..+++|++++.+. .+.+.+.+ ....+|+|+|||+++++.|++.+...
T Consensus 117 ~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~~~d~i~f~S~~~~~~f~~~~~~~~~~ 195 (240)
T PRK09189 117 PTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAIL-GGAPFDAVLLYSRVAARRFFALMRLSIAP 195 (240)
T ss_pred CCCcEEEeccCcccchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHH-hcCCCCEEEEeCHHHHHHHHHHHhhhcCc
Confidence 58899999999999999999999999999999999987653 23455555 34679999999999999999988643
Q ss_pred -CCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc
Q 023179 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (286)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~ 172 (286)
++.+.+++|||+.|++++++. |...+.+++.++.++|++.|.
T Consensus 196 ~~l~~~~~v~Ig~~ta~al~~~------~~~~~~ia~~~t~~~l~~~l~ 238 (240)
T PRK09189 196 PADEKTRFLCLSARVAAALPAS------LRAQALIAAMPDEKSLLSLLS 238 (240)
T ss_pred ccccccCeEEeCHHHHHHHhhc------cccceeecCCCCHHHHHHHhh
Confidence 235788999999999999887 655556688999999998764
No 19
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=99.47 E-value=5.9e-13 Score=118.27 Aligned_cols=118 Identities=24% Similarity=0.309 Sum_probs=103.1
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCch-HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC--
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTD-RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT-- 126 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~-~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~-- 126 (286)
|++||+.|+....+.+.+.|.++|+++..+++|++++..... .+...+ ....+|+|+|||+.+|+.|++.+...+.
T Consensus 123 ~~~vl~~~~~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~-~~~~~d~v~ftS~~~v~~~~~~~~~~~~~~ 201 (248)
T COG1587 123 GKRVLILRGNGGREVLEEKLEERGAEVREVEVYRTEPPPLDEATLIELL-KLGEVDAVVFTSSSAVRALLALAPESGIEF 201 (248)
T ss_pred CCeEEEEcCCCchHHHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHH-HhCCCCEEEEeCHHHHHHHHHHccccchhH
Confidence 799999999999999999999999999999999999887432 233344 5789999999999999999998877543
Q ss_pred -CCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC
Q 023179 127 -PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (286)
Q Consensus 127 -~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~ 174 (286)
.+.+++|||+.|++.|+++ |+++++.++.++.+.|.+.+...
T Consensus 202 ~~~~~v~~IG~~Ta~~l~~~------G~~~~~~~~~~~~~~l~~al~~~ 244 (248)
T COG1587 202 LERKRVASIGPRTAETLKEL------GITVDIAAEKPTLEALADALAKL 244 (248)
T ss_pred hhCceEEEecHHHHHHHHHc------CCcceecccccchHHHHHHHHHH
Confidence 3789999999999999999 99998999989999998887654
No 20
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=99.41 E-value=7.1e-12 Score=120.59 Aligned_cols=231 Identities=13% Similarity=0.149 Sum_probs=149.3
Q ss_pred CCCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceEEee---------eC-----------------CCc-hHHH-
Q 023179 48 NSNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHA---------QG-----------------PDT-DRLS- 94 (286)
Q Consensus 48 l~g~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~---------~~-----------------~~~-~~l~- 94 (286)
..|++|++....+ ...++.+.|.++|+++..+|=+.-. |. .+. +..+
T Consensus 78 ~~Gk~VvrL~~GDP~vfg~~~ee~~~l~~~gi~~eVVPGISS~~aaaA~aGiPlt~r~~~~s~~viT~h~~~~~~~~~~~ 157 (474)
T PRK07168 78 KEGKIVVRLKGGDPSIFGRVGEEAETLAAANIPYEIVPGITSSIAASSYAGIPLTHRNYSNSVTLLTGHAKGPLTDHGKY 157 (474)
T ss_pred hCCCEEEEEeCCCchHHhhHHHHHHHHHhCCCCEEEECChhHHHHHHHHcCCCCCCccccceEEEEccCcCCccccchhH
Confidence 3688888875543 2457788899999888877744310 11 000 0000
Q ss_pred HHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC-CCcEEEEEChhh----------HHHHHHhhhccCCCCc---eeccCC
Q 023179 95 SVLNADTIFDWIIITSPEAGSVFLEAWKEAGT-PNVRIGVVGAGT----------ASIFEEVIQSSKCSLD---VAFSPS 160 (286)
Q Consensus 95 ~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~-~~~~i~aVG~~T----------a~~L~~~~~~~~~G~~---~~~~~~ 160 (286)
..+ ...--.++++.......+.+.|.+.|. ++.+++++-..| .+.|.+..+.. ++. +.++.+
T Consensus 158 ~~l--~~~~tlV~lm~~~~l~~I~~~L~~~G~~~~tpvavv~~~t~~~Qri~~~tL~~l~~~~~~~--~~~~pavivvG~ 233 (474)
T PRK07168 158 NSS--HNSDTIAYYMGIKNLPTICENLRQAGKKEDTPVAVIEWGTTGKQRVVTGTLSTIVSIVKNE--NISNPSMTIVGD 233 (474)
T ss_pred HHh--cCCCeEEEEcChhhHHHHHHHHHHcCcCCCCeEEEEEECCCCCcEEEEEEHHHHHHHHHhc--CCCCCEEEEECh
Confidence 112 111245666777777777888888776 356665544333 23332110000 332 122221
Q ss_pred CCC-HHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHH
Q 023179 161 KAT-GKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 161 ~~~-~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sa 239 (286)
--. .+.+ .........|++||+.|.......|.+.|++.|++|.++|+-+..+.+.. +..++++..+|||+|||+.+
T Consensus 234 vv~~~~~~-~~~~~~PL~G~~IlVtR~~~q~~~l~~~L~~~GA~v~~~P~i~~~~~~~~-~~~l~~l~~ydwlvFTS~ng 311 (474)
T PRK07168 234 VVSLRNQI-AWKERKPLHGKKVLFTSATNKTSVMKQKLQEAGAEIYQIPTFKKEEYTLT-LEQINEIFNVNRLVFCSAES 311 (474)
T ss_pred Hhcccccc-chhhcccccCceEEeeccHHHHHHHHHHHHHcCCEEEEeccEEeeCCCCc-HHHHHHhccCCEEEEcCHHH
Confidence 111 1111 12222223689999999999999999999999999999999997655433 45566678999999999999
Q ss_pred HHHHHHHhccccC----CCceEEEeCHHHHHHHHHcCCCeEEeCCCCCCCC
Q 023179 240 VRSWVNLISDTEQ----WSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 286 (286)
Q Consensus 240 v~~~~~~~~~~~~----~~~~iv~IG~~Ta~~l~~~G~~~v~~~~~ps~eg 286 (286)
|+.|++.+.+.+. ...+++|||+.|+++|+++|+..+ |++++.|+
T Consensus 312 V~~Ff~~l~~~~~D~R~l~~kiaavG~~Ta~aL~~~Gl~~d--p~~~~~e~ 360 (474)
T PRK07168 312 VEILMQSCSKYKKDIRSLQAELQHMNVATQEKLMQYGLLSK--EAKFSSDT 360 (474)
T ss_pred HHHHHHHHHHcCCChHHhCCEEEEECHHHHHHHHhCCCccC--Ccccccce
Confidence 9999999987531 247899999999999999999985 88877664
No 21
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=99.39 E-value=5.5e-12 Score=113.13 Aligned_cols=120 Identities=13% Similarity=0.045 Sum_probs=101.4
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCch-HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc---
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTD-RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA--- 124 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~-~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~--- 124 (286)
.|++||+.|.....+.|.+.|+++|+.|..+++|+..+..... .+...+ .....|+++|||+++++.|++.+...
T Consensus 137 ~g~~vLi~rg~~gr~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~l~-~~~~~d~i~ftS~sav~~f~~~l~~~~~~ 215 (266)
T PRK08811 137 PLQAVGLITAPGGRGLLAPTLQQRGARILRADVYQRVPLRLRASTLAALS-RAAPRSVLALSSAEALTLILQQLPDALRR 215 (266)
T ss_pred CCCEEEEEeCCCcHHHHHHHHHHCCCEEeEEEEEeeeCCCCCHHHHHHHH-HhCCCCEEEEChHHHHHHHHHHhhhhHHH
Confidence 5899999999999999999999999999999999987654322 233332 23578999999999999999887542
Q ss_pred CCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC
Q 023179 125 GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (286)
Q Consensus 125 ~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~ 175 (286)
++.+.+++|+|+.|++.+++. |+..+.+++.++.++|+..+..+.
T Consensus 216 ~l~~~~~v~is~rtA~~a~~~------G~~~v~vA~~~~~~~l~~a~~~~~ 260 (266)
T PRK08811 216 ALQQRPVVASSDRLLDAAHAA------GFIHVMRAAGPLPAQLAAAAAAIM 260 (266)
T ss_pred HHhCCCEEEeCHHHHHHHHHc------CCCceeeCCCCCHHHHHHHHHhhc
Confidence 246888999999999999999 999988999999999999987764
No 22
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=99.16 E-value=1.9e-10 Score=115.09 Aligned_cols=102 Identities=20% Similarity=0.247 Sum_probs=86.3
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcH--HHHHHcCCCCEEEEeChHHHHHHHHHhccccCCC
Q 023179 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ--TVLKQALSIPVVAVASPSAVRSWVNLISDTEQWS 254 (286)
Q Consensus 177 ~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~--~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~ 254 (286)
.+.+||+.|.......|.+.|++.|+++..+++.+..+.+...+ ..+..+..+|+|||||+.+|+.|++.+......+
T Consensus 2 ~~~~VLVTRp~~qa~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nAV~~~~~~l~~~~~~~ 81 (656)
T PRK06975 2 RAFTVVVTRPDGQSAALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNAVDRALARLDAIWPHA 81 (656)
T ss_pred CCCEEEEeCcHhHHHHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHHHHHHHHHHHhhCccC
Confidence 35799999999999999999999999999999999988765321 2334467999999999999999999876432225
Q ss_pred ceEEEeCHHHHHHHHHcCCCeEEe
Q 023179 255 NSVACIGETTASAAKRLGLKNVYY 278 (286)
Q Consensus 255 ~~iv~IG~~Ta~~l~~~G~~~v~~ 278 (286)
.+++|||+.|+++++++|+..+++
T Consensus 82 ~~i~AVG~~Ta~aL~~~Gi~~~~~ 105 (656)
T PRK06975 82 LPVAVVGPGSVAALARHGIAAPAH 105 (656)
T ss_pred CeEEEECHHHHHHHHHcCCCCcee
Confidence 899999999999999999997765
No 23
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=96.35 E-value=0.15 Score=44.55 Aligned_cols=179 Identities=13% Similarity=0.063 Sum_probs=98.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++..++. . .+.+...+.++. ...+|+||+.+........+.+.. .++++++++...
T Consensus 20 ~~~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~---~~ipvV~~~~~~--- 88 (268)
T cd06298 20 GIDDIATMYKYNIILSNS---D--NDKEKELKVLNNLLAKQVDGIIFMGGKISEEHREEFKR---SPTPVVLAGSVD--- 88 (268)
T ss_pred HHHHHHHHcCCeEEEEeC---C--CCHHHHHHHHHHHHHhcCCEEEEeCCCCcHHHHHHHhc---CCCCEEEEcccc---
Confidence 445667788998876642 1 121211222211 257999999865433334444433 378888888642
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-h-------hHHHHHHHhCCCeeEEEEeeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-S-------NEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-~-------~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
... .+..+..-....+..+++.|.+. +.++++++.+... . .-+.+.++++|.++....++...
T Consensus 89 -~~~------~~~~v~~d~~~~~~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~ 159 (268)
T cd06298 89 -EDN------ELPSVNIDYKKAAFEATELLIKN--GHKKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGD 159 (268)
T ss_pred -CCC------CCCEEEECcHHHHHHHHHHHHHc--CCceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeCC
Confidence 111 22211111123355566667653 4478999986654 1 34567888888765443333322
Q ss_pred cCCCCcHHHHHH-cC--CCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 214 PVHHVDQTVLKQ-AL--SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 214 ~~~~~~~~~~~~-~~--~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
.......+..+. +. .+++|++++...+..+++.+.+.+. .++.+++++.
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~di~vvg~d~ 214 (268)
T cd06298 160 YTYESGYELAEELLEDGKPTAAFVTDDELAIGILNAAQDAGLKVPEDFEIIGFNN 214 (268)
T ss_pred CChhHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHcCCCCccceEEEeecc
Confidence 211111122222 21 2899999998888778777765432 2466777764
No 24
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=96.33 E-value=0.11 Score=45.73 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=97.6
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHH
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 144 (286)
+.+.+++.|+++..+..- .. +...+.+.+ ....+|.||+++...-...++.+.+ .+++++++|.....
T Consensus 32 i~~~~~~~g~~~~v~~~~---~~-~~~~~~~~l-~~~~~dgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~---- 99 (275)
T cd06295 32 IADALAERGYDLLLSFVS---SP-DRDWLARYL-ASGRADGVILIGQHDQDPLPERLAE---TGLPFVVWGRPLPG---- 99 (275)
T ss_pred HHHHHHHcCCEEEEEeCC---ch-hHHHHHHHH-HhCCCCEEEEeCCCCChHHHHHHHh---CCCCEEEECCccCC----
Confidence 556677889888765421 11 123444444 2357999999775432333444433 47899999864321
Q ss_pred hhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecCCC
Q 023179 145 VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (286)
Q Consensus 145 ~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~~~ 217 (286)
. .+..+..-....++.+++.|.+. ..++++++.+... ..-+.+.|++.|..+....++.......
T Consensus 100 ~------~~~~V~~d~~~~g~~~a~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~ 171 (275)
T cd06295 100 Q------PYCYVGSDNVGGGRLATEHLLAR--GRRRIAFLGGPQDMPEGEERLEGYREALAEAGLPLDPRLVAPGDFTEE 171 (275)
T ss_pred C------CCCEEEECcHHHHHHHHHHHHHC--CCCeEEEEcCCCCcchhHHHHHHHHHHHHHcCCCCChhhEEeccCCHH
Confidence 1 22211111122345566666554 3468999877543 2346677888776554333332221111
Q ss_pred CcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHHH
Q 023179 218 VDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (286)
Q Consensus 218 ~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~T 264 (286)
.....+.. + ..+++|++++...+..++..+.+.+. .++.++|++...
T Consensus 172 ~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~~l~~~g~~ip~~i~ii~~d~~~ 225 (275)
T cd06295 172 SGRAAMRALLERGPDFDAVFAASDLMALGALRALREAGRRVPEDVAVVGFDDIP 225 (275)
T ss_pred HHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHhCCCCccceEEEeeCCch
Confidence 11122222 2 35899999998877777666665432 246677776543
No 25
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=96.09 E-value=0.1 Score=45.53 Aligned_cols=179 Identities=8% Similarity=0.011 Sum_probs=96.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (286)
.+.+.++++|+++...... +.....+.+ ....+|+||+++...-...+..+.+ .+++++++|....
T Consensus 20 gi~~~~~~~g~~~~~~~~~------~~~~~~~~l-~~~~vdgii~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~---- 85 (261)
T cd06272 20 GINQAISKNGYNMNVSITP------SLAEAEDLF-KENRFDGVIIFGESASDVEYLYKIK---LAIPVVSYGVDYD---- 85 (261)
T ss_pred HHHHHHHHcCCEEEEEecc------cHHHHHHHH-HHcCcCEEEEeCCCCChHHHHHHHH---cCCCEEEEcccCC----
Confidence 4446667889888776543 112223334 2357999999876543333343433 3678999987542
Q ss_pred HhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecCC
Q 023179 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (286)
Q Consensus 144 ~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~~ 216 (286)
. ++..+..-....+..+++.|.+. ..++++++.+... ...+.+.+++.|..+....++......
T Consensus 86 -~------~~~~V~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~ 156 (261)
T cd06272 86 -L------KYPIVNVDNEKAMELAVLYLAEK--GHKKIAYIGDLSLDRRQRKRFKGFLETCDENGISISDSHIDVDGLSA 156 (261)
T ss_pred -C------CCCEEEEChHHHHHHHHHHHHHc--CchhEEEeecccccccHHHHHHHHHHHHHHcCCCCCHHHeeeCCCCH
Confidence 2 22211111123355566666654 3468888865543 124566788888644332233211111
Q ss_pred CCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHHHH
Q 023179 217 HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTA 265 (286)
Q Consensus 217 ~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~Ta 265 (286)
....+.+.. + ..+++|++++-..+...+..+.+.+. .++.+++++....
T Consensus 157 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~dv~vvg~d~~~~ 212 (261)
T cd06272 157 EGGDNAAKKLLKESDLPTAIICGSYDIALGVLSALNKQGISIPEDIEIISYDNIPQ 212 (261)
T ss_pred HHHHHHHHHHHcCCCCCCEEEECCcHHHHHHHHHHHHhCCCCCCceEEEeeCChhH
Confidence 111122222 1 34899999988877777766655432 2566777766433
No 26
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=96.06 E-value=0.12 Score=45.03 Aligned_cols=183 Identities=9% Similarity=-0.005 Sum_probs=96.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
..+.+.+++.|.++...+... .. ....++.+.+ ....+|.||+++...-..+.+.+.. .++++++++...
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~-~~-~~~~~~~~~l-~~~~vdgiii~~~~~~~~~~~~~~~---~~ipvv~~~~~~---- 88 (268)
T cd01575 19 QGISDVLEAAGYQLLLGNTGY-SP-EREEELLRTL-LSRRPAGLILTGLEHTERTRQLLRA---AGIPVVEIMDLP---- 88 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCC-Cc-hhHHHHHHHH-HHcCCCEEEEeCCCCCHHHHHHHHh---cCCCEEEEecCC----
Confidence 345567788898887655311 11 1111222222 1357999999886543344444443 367888887532
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecC
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (286)
... ....+..-....+..+++.|.+. ..+++.++.+... ...+.+.|++.|..+....++.....
T Consensus 89 ~~~------~~~~v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~~ 160 (268)
T cd01575 89 PDP------IDMAVGFSHAEAGRAMARHLLAR--GYRRIGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTPEPSS 160 (268)
T ss_pred CCC------CCCeEEeCcHHHHHHHHHHHHHC--CCCcEEEecCCCCcccHHHHHHHHHHHHHHcCCCCCceeEeccCCC
Confidence 111 11111111123345555666554 3468888877654 23466778888764433222221111
Q ss_pred CCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 216 HHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 216 ~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
.....+..++ + ..+++|++.|...+..++..+.+.+. .++.+++++..
T Consensus 161 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~p~di~vig~d~~ 215 (268)
T cd01575 161 FALGRELLAELLARWPDLDAVFCSNDDLALGALFECQRRGISVPEDIAIAGFGDL 215 (268)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHhCCCCCcceEEEecCCc
Confidence 1111122222 2 36899999998887777777765431 24566666644
No 27
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=96.04 E-value=0.16 Score=44.36 Aligned_cols=178 Identities=12% Similarity=0.059 Sum_probs=95.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCch---HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~---~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
..+.+.++++|+.++... .. .+.+ ...+.+ .-...|.||+++.......++.+.+ .+++++++|....
T Consensus 19 ~~i~~~~~~~g~~~~~~~---~~--~~~~~~~~~~~~l-~~~~vdgiii~~~~~~~~~~~~l~~---~~iPvv~~~~~~~ 89 (268)
T cd06273 19 QAFQETLAAHGYTLLVAS---SG--YDLDREYAQARKL-LERGVDGLALIGLDHSPALLDLLAR---RGVPYVATWNYSP 89 (268)
T ss_pred HHHHHHHHHCCCEEEEec---CC--CCHHHHHHHHHHH-HhcCCCEEEEeCCCCCHHHHHHHHh---CCCCEEEEcCCCC
Confidence 356677888898887521 11 1212 122222 1246899999876544444444443 3678888876421
Q ss_pred HHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEee
Q 023179 140 SIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTY 210 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~--------~~~L~~~L~~~G~~V~~~~vY 210 (286)
.. .+.. +... ...+..+++.|.+. ..+++.++.+... ...+.+.|+++|+.+....++
T Consensus 90 ----~~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~ 156 (268)
T cd06273 90 ----DS------PYPC-VGFDNREAGRLAARHLIAL--GHRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQV 156 (268)
T ss_pred ----CC------CCCE-EEeChHHHHHHHHHHHHHC--CCCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHee
Confidence 11 2211 1112 12344556666654 3478999865431 234567888888766544444
Q ss_pred eeecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 211 TTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 211 ~~~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
..........+.... + ..+++|++++...+..++..+.+.+. .++.+++++.
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~~~~~~l~~~g~~~p~~i~vig~d~ 215 (268)
T cd06273 157 EAPYSIADGRAALRQLLEQPPRPTAVICGNDVLALGALYEARRLGLSVPEDLSIVGFDD 215 (268)
T ss_pred eCCCcHHHHHHHHHHHHcCCCCCCEEEEcChHHHHHHHHHHHHcCCCCCCceEEEecCC
Confidence 322111111122222 2 35899999998888777777765432 2455666654
No 28
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=95.94 E-value=0.16 Score=44.35 Aligned_cols=181 Identities=11% Similarity=0.037 Sum_probs=97.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
..+.+.++++|+++..++... .++ ...+.+.+ .-..+|.||+++.......++.+.+ .+++++++|.....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~l~~---~~ipvV~~~~~~~~- 90 (265)
T cd06299 19 TAIQDAASAAGYSTIIGNSDE---NPETENRYLDNL-LSQRVDGIIVVPHEQSAEQLEDLLK---RGIPVVFVDREITG- 90 (265)
T ss_pred HHHHHHHHHcCCEEEEEeCCC---CHHHHHHHHHHH-HhcCCCEEEEcCCCCChHHHHHHHh---CCCCEEEEecccCC-
Confidence 345567778898888664321 111 11122222 1357899999875433323444443 47889999865321
Q ss_pred HHHhhhccCCCCceeccCCCC-CHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~-~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
. ++.. +..... ....+++.|.+. ..++++++.+.... .-+.+.++++|.++....++...
T Consensus 91 ---~------~~~~-v~~d~~~~~~~~~~~l~~~--g~~~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~ 158 (265)
T cd06299 91 ---S------PIPF-VTSDPQPGMTEAVSLLVAL--GHKKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGG 158 (265)
T ss_pred ---C------CCCE-EEECcHHHHHHHHHHHHHc--CCCcEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhEEecC
Confidence 2 3222 112211 223344555443 34689998765532 35677888888654332233222
Q ss_pred cCCCCcHHHHHH-cC-CCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 214 PVHHVDQTVLKQ-AL-SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 214 ~~~~~~~~~~~~-~~-~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
.......+..+. +. .+++|++++...+...+..+.+.+. .++.+++++..
T Consensus 159 ~~~~~~~~~~~~~l~~~~~av~~~~d~~a~gv~~al~~~g~~vp~dv~v~g~d~~ 213 (265)
T cd06299 159 YSQESGYAGATKLLDQGATAIIAGDSMMTIGAIRAIHDAGLVIGEDISLIGFDDL 213 (265)
T ss_pred cchHHHHHHHHHHHcCCCCEEEEcCcHHHHHHHHHHHHhCCCCCcceeEEEeCCH
Confidence 111111122222 22 3899999999888777777765432 25677777753
No 29
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=95.82 E-value=0.22 Score=43.34 Aligned_cols=180 Identities=11% Similarity=0.016 Sum_probs=98.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
..+.+.+++.|.++...+. ...++ ..++.+.+ .....|+||+.+...-...++.+.+ ..+++.++..+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l-~~~~vdgiii~~~~~~~~~~~~~~~----~~pvv~~~~~~~-- 88 (260)
T cd06286 19 DGIEKAALKHGYKVVLLQT---NYDKEKELEYLELL-KTKQVDGLILCSRENDWEVIEPYTK----YGPIVLCEEYDS-- 88 (260)
T ss_pred HHHHHHHHHcCCEEEEEeC---CCChHHHHHHHHHH-HHcCCCEEEEeCCCCCHHHHHHHhc----CCCEEEEecccC--
Confidence 3556667788988876533 11111 11222223 2356899999875322222333433 237888886542
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
. ++..+..-....+..+++.|.+. ..++++++.+... ..-+.+.|++.|..+....+|....
T Consensus 89 ---~------~~~~v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~i~~~~~ 157 (260)
T cd06286 89 ---K------NISSVYIDHYEAFYEALKYLIQK--GYRKIAYCIGRKKSLNSQSRKKAYKDALEEYGLTPDEEWIFEGCF 157 (260)
T ss_pred ---C------CCCEEEECChHHHHHHHHHHHHC--CCceEEEEcCCcccchhHHHHHHHHHHHHHcCCCCChHheEeCCC
Confidence 2 33322222223455566666654 3478999987653 3345677888886654333333211
Q ss_pred CCCCcHHHHHHc----CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 215 VHHVDQTVLKQA----LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 215 ~~~~~~~~~~~~----~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
......+..+.+ ..+++|++.+-..+..++..+.+.+. .++.+++++..
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~ip~di~v~g~d~~ 213 (260)
T cd06286 158 TIEDGERIGHQLLKMKDRPDAIFTGSDEVAAGIITEAKKQGIRVPEDLAIIGFDNQ 213 (260)
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEEcchHHHHHHHHHHHHcCCCCCcceEEEeecCc
Confidence 111112222221 36899999999998888888776542 24677777643
No 30
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=95.77 E-value=0.14 Score=44.44 Aligned_cols=177 Identities=16% Similarity=0.138 Sum_probs=93.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
..+.+.++++|+++...+. .. +.+...+.++. ...+|+||+++........+.+.+ .+++++.+|....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~---~~--~~~~~~~~i~~l~~~~~dgii~~~~~~~~~~~~~~~~---~~ipvv~~~~~~~- 89 (259)
T cd01542 19 KGILAALYENGYQMLLMNT---NF--SIEKEIEALELLARQKVDGIILLATTITDEHREAIKK---LNVPVVVVGQDYP- 89 (259)
T ss_pred HHHHHHHHHCCCEEEEEeC---CC--CHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhc---CCCCEEEEeccCC-
Confidence 3455667788988765432 11 11211222222 368999999876533334444433 3678998886431
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~--------~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
.. .....-....+..+++.|.+. ..+++.++.+... ...+.+.+++.|. ....++..
T Consensus 90 ---~~--------~~v~~d~~~~~~~~~~~l~~~--g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~~~~~--~~~~~~~~ 154 (259)
T cd01542 90 ---GI--------SSVVYDDYGAGYELGEYLAQQ--GHKNIAYLGVSESDIAVGILRKQGYLDALKEHGI--CPPNIVET 154 (259)
T ss_pred ---CC--------CEEEECcHHHHHHHHHHHHHc--CCCcEEEEcCCcccchhHHHHHHHHHHHHHHcCC--ChHHeeec
Confidence 11 111111223345566666663 3478888865421 2346677888776 11222222
Q ss_pred ecCCCCcHHHHHH-c-CC-CCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 213 EPVHHVDQTVLKQ-A-LS-IPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 213 ~~~~~~~~~~~~~-~-~~-~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
........+.+.. + .. +++|++++-..+..+++.+.+.+. .++.++.++..
T Consensus 155 ~~~~~~~~~~~~~~l~~~~~~~i~~~~d~~a~g~~~~l~~~g~~vp~di~v~g~d~~ 211 (259)
T cd01542 155 DFSYESAYEAAQELLEPQPPDAIVCATDTIALGAMKYLQELGRRIPEDISVAGFGGY 211 (259)
T ss_pred cCchhhHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEecCCc
Confidence 2111111222222 2 12 899999998888777777765432 24566666654
No 31
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=95.77 E-value=0.18 Score=43.96 Aligned_cols=181 Identities=12% Similarity=0.070 Sum_probs=96.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
..+.+.++++|+++.......- .+ .+.+.+.+ ....+|+||+++...-...++.+.+ .+++++++|.....
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~-~~~~vdgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~- 94 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPD---EDPLEVYRRLV-ESGLVDGVIISRTRPDDPRVALLLE---RGFPFVTHGRTELG- 94 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCc---HHHHHHHHHHH-HcCCCCEEEEecCCCCChHHHHHHh---cCCCEEEECCcCCC-
Confidence 3455667788988877654221 11 12333444 2356999999875432222333333 36788888754311
Q ss_pred HHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
. .+.. +... ...+...++.|.+. ..++++++.+... ..-+.+.++++|..+....++...
T Consensus 95 ---~------~~~~-V~~d~~~~~~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~ 162 (268)
T cd06271 95 ---D------PHPW-VDFDNEAAAYQAVRRLIAL--GHRRIALLNPPEDLTFAQHRRAGYRRALAEAGLPLDPALIVSGD 162 (268)
T ss_pred ---C------CCCe-EeeCcHHHHHHHHHHHHHc--CCCcEEEecCccccchHHHHHHHHHHHHHHhCCCCCCceEEeCC
Confidence 1 2221 1122 22344455666554 3478998876543 234567788888765433344322
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
.......+..+. + ..+++|+..+...+..++..+.+.+. .++.+++++..
T Consensus 163 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vp~~i~iig~d~~ 219 (268)
T cd06271 163 MTEEGGYAAAAELLALPDRPTAIVCSSELMALGVLAALAEAGLRPGRDVSVVGFDDS 219 (268)
T ss_pred CChHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHhCCCCCcceeEEEecCc
Confidence 111111122222 1 35899999998877777777665432 24556666543
No 32
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.69 E-value=0.23 Score=43.32 Aligned_cols=184 Identities=8% Similarity=0.024 Sum_probs=94.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
..+.+.++++|+++.....- ......+.+...+ .-..+|.||++++..-....+.+.+ .++++++++......
T Consensus 24 ~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~-~~~~~dgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~~- 96 (270)
T cd06294 24 RGISAVANENGYDISLATGK--NEEELLEEVKKMI-QQKRVDGFILLYSREDDPIIDYLKE---EKFPFVVIGKPEDDK- 96 (270)
T ss_pred HHHHHHHHHCCCEEEEecCC--CcHHHHHHHHHHH-HHcCcCEEEEecCcCCcHHHHHHHh---cCCCEEEECCCCCCC-
Confidence 34566777889887643211 0100112333333 2246899999875433333444433 378899998643110
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeeecC
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (286)
. ++..+..-....+..+++.|.+. ..++++++.+.... ..+.+.+++.|..+....+......
T Consensus 97 --~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~ 166 (270)
T cd06294 97 --E------NITYVDNDNIQAGYDATEYLIKL--GHKKIAFVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVIISLDFS 166 (270)
T ss_pred --C------CCCeEEECcHHHHHHHHHHHHHc--CCccEEEecCCcccHHHHHHHHHHHHHHHHcCCCCCcceEEecCCc
Confidence 1 22211111123345566666654 34799999876542 2456778888753321111111111
Q ss_pred CCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 216 HHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 216 ~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
.....+.... + ..+++|++.+...+...+..+.+.+. .++.+++++..
T Consensus 167 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~iP~dv~vig~d~~ 221 (270)
T cd06294 167 EEGGYKALKKLLEQHPRPTAIVATDDLLALGVLKVLNELGLKVPEDLSIIGFNNS 221 (270)
T ss_pred hHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCcceEEEeeCCh
Confidence 1111122222 2 35899999998777777777665432 24556666543
No 33
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=95.66 E-value=0.12 Score=47.92 Aligned_cols=181 Identities=9% Similarity=0.037 Sum_probs=108.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
..+.+.++++|++++..+.-... .......+.+ ....+|.||+.+...-..+.+.+.+. +.+++.+|....
T Consensus 78 ~gi~~~~~~~gy~~~l~~~~~~~--~~e~~~~~~l-~~~~vdGiIi~~~~~~~~~~~~l~~~---~~P~V~i~~~~~--- 148 (333)
T COG1609 78 KGIEEAAREAGYSLLLANTDDDP--EKEREYLETL-LQKRVDGLILLGERPNDSLLELLAAA---GIPVVVIDRSPP--- 148 (333)
T ss_pred HHHHHHHHHcCCEEEEECCCCCH--HHHHHHHHHH-HHcCCCEEEEecCCCCHHHHHHHHhc---CCCEEEEeCCCc---
Confidence 45566777899999877665511 1112233333 24679999999855545555555543 789999998764
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeE-EEEeeeeec
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVV-RLNTYTTEP 214 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~-~~~vY~~~~ 214 (286)
.. ++..+..-....+..+++.|.+.. .+++.++.|... ...+.+.|+++|..+. .... ....
T Consensus 149 -~~------~~~~V~~Dn~~~~~~a~~~L~~~G--~~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~-~~~~ 218 (333)
T COG1609 149 -GL------GVPSVGIDNFAGAYLATEHLIELG--HRRIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIV-EGDF 218 (333)
T ss_pred -cC------CCCEEEEChHHHHHHHHHHHHHCC--CceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEE-ecCC
Confidence 22 343333322334555666776642 478999988731 2457789999998762 2222 2222
Q ss_pred CCCCcHHHHHH-c---CC-CCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 215 VHHVDQTVLKQ-A---LS-IPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 215 ~~~~~~~~~~~-~---~~-~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
........... + .. +++|++.|-..+--.+..+.+.+. .++.++.++.
T Consensus 219 ~~~~g~~~~~~ll~~~~~~ptAif~~nD~~Alg~l~~~~~~g~~vP~disviGfDd 274 (333)
T COG1609 219 SEESGYEAAERLLARGEPRPTAIFCANDLMALGALRALRELGLRVPEDLSVIGFDD 274 (333)
T ss_pred ChHHHHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCCeeEEEEecC
Confidence 22222222222 2 23 899999999999888877666532 1355666665
No 34
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=95.57 E-value=0.43 Score=41.49 Aligned_cols=181 Identities=11% Similarity=0.072 Sum_probs=95.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
..+.+.++++|+++..... . .+.+.....++. -..+|+||+.....-...++.+.+ .+++++++|....
T Consensus 19 ~~i~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~l~~~~~---~~ipvV~~~~~~~- 89 (267)
T cd06283 19 KGIEDVCRAHGYQVLVCNS---D--NDPEKEKEYLESLLAYQVDGLIVNPTGNNKELYQRLAK---NGKPVVLVDRKIP- 89 (267)
T ss_pred HHHHHHHHHcCCEEEEEcC---C--CCHHHHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHhc---CCCCEEEEcCCCC-
Confidence 4556777788988754321 1 122222222222 257899999876432222343332 4789999986531
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~--------~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
.. ++..+..-....++.+++.|.+. ..++++++.+... ...+.+.+++.|..+....+...
T Consensus 90 ---~~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~ 158 (267)
T cd06283 90 ---EL------GVDTVTLDNYEAAKEAVDHLIEK--GYERILFVTEPLDEISPRMERYEGFKEALAEHGIGVNEELIEID 158 (267)
T ss_pred ---CC------CCCEEEeccHHHHHHHHHHHHHc--CCCcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCcceeEec
Confidence 12 32221221223456667777654 3468888865432 13456777777743322222111
Q ss_pred ecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
........+..++ + ..+++|++++...+..++..+.+.+. .++.+++++..
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~v~g~d~~ 216 (267)
T cd06283 159 DEDADELDERLRQLLNKPKKKTAIFAANGLILLEVLKALKELGIRIPEDVGLIGFDDT 216 (267)
T ss_pred ccchHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCccceEEEEeCCc
Confidence 1111111112222 1 25899999998888777777765542 24567777654
No 35
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.55 E-value=0.44 Score=38.41 Aligned_cols=113 Identities=20% Similarity=0.234 Sum_probs=75.4
Q ss_pred CCCeEEEeCCCCch-----HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHH
Q 023179 49 SNPKVVVTRERGKN-----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFL 118 (286)
Q Consensus 49 ~g~~VLitR~~~~~-----~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~-----~av~~~~ 118 (286)
++++||+....++. .-+...|+..|++|+++-.-.. .+++.+.. ...+.|.|.+++. ..++.+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp-----~e~i~~~a-~~~~~d~V~lS~~~~~~~~~~~~~~ 75 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTS-----QEEFIDAA-IETDADAILVSSLYGHGEIDCRGLR 75 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCC-----HHHHHHHH-HHcCCCEEEEcCccccCHHHHHHHH
Confidence 46788888766543 4566778899999998764332 24454554 2356788777653 3445566
Q ss_pred HHHHHcCCCCcEEEEEChh---------hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC
Q 023179 119 EAWKEAGTPNVRIGVVGAG---------TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (286)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~---------Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~ 174 (286)
+.+.+.+..++++++-|.- ..+.|++. |+...|.|.. +.+.++..|.+.
T Consensus 76 ~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~------G~~~vf~~~~-~~~~i~~~l~~~ 133 (137)
T PRK02261 76 EKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEM------GFDRVFPPGT-DPEEAIDDLKKD 133 (137)
T ss_pred HHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHc------CCCEEECcCC-CHHHHHHHHHHH
Confidence 7777777778888888864 12578888 9987776544 677777777654
No 36
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=95.44 E-value=0.21 Score=43.81 Aligned_cols=182 Identities=12% Similarity=0.049 Sum_probs=94.7
Q ss_pred HHHHHHHh-CCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhh
Q 023179 64 KLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 64 ~l~~~L~~-~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
.+.+.+++ .|+++...... .+.+...+.++. ....|+||+.+.. .....++.+.+ .+++++.++...
T Consensus 20 gi~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~---~~iPvv~~~~~~ 91 (272)
T cd06301 20 AMKEHAKVLGGVELQFEDAK-----NDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANA---AGIPLVYVNRRP 91 (272)
T ss_pred HHHHHHHHcCCcEEEEeCCC-----CCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHH---CCCeEEEecCCC
Confidence 34555667 78777764331 121222222211 2468999987654 23334444433 478888888653
Q ss_pred HHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeee
Q 023179 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~ 211 (286)
... .. ++..+.......+..+++.|.+.....++++++.|... ...+.+.|+++| .+....++.
T Consensus 92 ~~~--~~------~~~~V~~d~~~~g~~~~~~l~~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~-~~~~~~~~~ 162 (272)
T cd06301 92 ENA--PK------GVAYVGSDEVVAGRLQAEYVADKLGGKGNVAILMGPLGQSAQIDRTKGVEEVLAKYP-DIKVVEEQT 162 (272)
T ss_pred CCC--CC------eeEEEecChHHHHHHHHHHHHHHhCCCccEEEEECCCCCccHHHHHHHHHHHHHHCC-CcEEEecCC
Confidence 211 01 22211121123345556666654223368999977653 245667888887 333333322
Q ss_pred eecCCCCcHHHHHH----cCCCCEEEEeChHHHHHHHHHhccccC--CCceEEEeCH
Q 023179 212 TEPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ--WSNSVACIGE 262 (286)
Q Consensus 212 ~~~~~~~~~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~--~~~~iv~IG~ 262 (286)
.........+..+. ...+++|++.+...+...++.+.+.+. .++.+++++.
T Consensus 163 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~~di~ivg~d~ 219 (272)
T cd06301 163 ANWSRAEAMDLMENWLSSGGKIDAVVANNDEMALGAIMALKAAGKSDKDVPVAGIDG 219 (272)
T ss_pred CCccHHHHHHHHHHHHHhCCCCCEEEECCCchHHHHHHHHHHcCCCCCCcEEEeeCC
Confidence 21111111111221 245899999888887777777765542 2567777753
No 37
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=95.40 E-value=0.4 Score=42.15 Aligned_cols=180 Identities=10% Similarity=0.014 Sum_probs=93.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEECh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~ 136 (286)
..+.+.++++|+++..+..-. ..+.+ .++..+ ....|+||+.... .+...++.+.+ .+++++.+|.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~---~~~~~~~~~~i~~l~--~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~ 90 (275)
T cd06320 19 EGYENEAKKLGVSVDIQAAPS---EGDQQGQLSIAENMI--NKGYKGLLFSPISDVNLVPAVERAKK---KGIPVVNVND 90 (275)
T ss_pred HHHHHHHHHhCCeEEEEccCC---CCCHHHHHHHHHHHH--HhCCCEEEECCCChHHhHHHHHHHHH---CCCeEEEECC
Confidence 345567778898877543221 11111 122222 2468999887532 23334454443 3788988886
Q ss_pred hhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhC-CCeeEEEE
Q 023179 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNR-GFEVVRLN 208 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~-G~~V~~~~ 208 (286)
.... . ....+.......++.+++.|.+.....++++++.+... ..-+.+.++++ |.++....
T Consensus 91 ~~~~----~------~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~ 160 (275)
T cd06320 91 KLIP----N------ATAFVGTDNKANGVRGAEWIIDKLAEGGKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVASQ 160 (275)
T ss_pred CCCC----c------cceEEecCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEEec
Confidence 4311 1 11111111122345556666554323468998876432 24567788888 87764321
Q ss_pred eeeeecCCCCcHH----HHHHcCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCH
Q 023179 209 TYTTEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 262 (286)
Q Consensus 209 vY~~~~~~~~~~~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~ 262 (286)
.+. ........ +++.-..+++|++.+-..+..+++.+.+.+. .+..+++++.
T Consensus 161 ~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~~di~vig~d~ 217 (275)
T cd06320 161 PAD--WDREKAYDVATTILQRNPDLKAIYCNNDTMALGVVEAVKNAGKQGKVLVVGTDG 217 (275)
T ss_pred CCC--ccHHHHHHHHHHHHHhCCCccEEEECCchhHHHHHHHHHhcCCCCCeEEEecCC
Confidence 111 11111111 1222246899999988888877777765432 1345555533
No 38
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=95.40 E-value=0.38 Score=42.12 Aligned_cols=181 Identities=7% Similarity=0.020 Sum_probs=95.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
..+.+.++++|+.+..... ....+ ...+.+.+ .-..+|+||+++..--...++.+.+ .++++++++....
T Consensus 19 ~g~~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~-~~~~vdgii~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~-- 89 (268)
T cd06270 19 SGVESVARKAGKHLIITAG---HHSAEKEREAIEFL-LERRCDALILHSKALSDDELIELAA---QVPPLVLINRHIP-- 89 (268)
T ss_pred HHHHHHHHHCCCEEEEEeC---CCchHHHHHHHHHH-HHcCCCEEEEecCCCCHHHHHHHhh---CCCCEEEEeccCC--
Confidence 3445667789998875432 11111 11122222 1367999999864211112344433 3678888886431
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
.. +...+..-....++.+++.|.+. ..++++++.+... ...+.+.++++|..+....++....
T Consensus 90 --~~------~~~~v~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~ 159 (268)
T cd06270 90 --GL------ADRCIWLDNEQGGYLATEHLIEL--GHRKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEGDF 159 (268)
T ss_pred --CC------CCCeEEECcHHHHHHHHHHHHHC--CCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEECCC
Confidence 11 21211122223455566666554 3468888876543 2235677888887654333332221
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
.........+. + ..+++|+.++...+..++..+.+.+. .++.+++++.
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ip~di~v~g~d~ 214 (268)
T cd06270 160 TEEGGYAAMQELLARGAPFTAVFCANDEMAAGAISALREHGISVPQDVSIIGFDD 214 (268)
T ss_pred CHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceeEEEecC
Confidence 11111122222 2 35899999998888888877766432 2466777775
No 39
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=95.28 E-value=0.88 Score=41.14 Aligned_cols=181 Identities=9% Similarity=0.042 Sum_probs=95.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
..+.+.++++|+++..++. . .+.+...+.++. ...+|.||+++...-....+.+.. ..+++++.+|...
T Consensus 76 ~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~--~~~iPvV~i~~~~-- 146 (327)
T PRK10423 76 RGVERSCFERGYSLVLCNT---E--GDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQR--YPSVPTVMMDWAP-- 146 (327)
T ss_pred HHHHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCCcchhhHHHHHh--cCCCCEEEECCcc--
Confidence 3455667788988765332 1 121222222211 257899999875432222232322 1367899998521
Q ss_pred HHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
... .... +.... ..+..+++.|.+. ..+++.|+.|... ..-+.+.|+++|+.+....++..
T Consensus 147 --~~~------~~~~-v~~d~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~ 215 (327)
T PRK10423 147 --FDG------DSDL-IQDNSLLGGDLATQYLIDK--GYTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTG 215 (327)
T ss_pred --CCC------CCCE-EEEChHHHHHHHHHHHHHc--CCCeEEEEeCCccccchHHHHHHHHHHHHHcCCCCCcceEEeC
Confidence 111 2221 11221 2345566666554 3478999876542 24567888888876543323221
Q ss_pred ecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
........+..+. + ..+++|++++-..+..++..+.+.+. .++.+++++..
T Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~~l~~~g~~vP~dvsvigfd~~ 273 (327)
T PRK10423 216 DFEFNGGFDAMQQLLALPLRPQAVFTGNDAMAVGVYQALYQAGLSVPQDIAVIGYDDI 273 (327)
T ss_pred CCChHHHHHHHHHHhcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEeCCh
Confidence 1111111122222 2 35899999998888777777766532 25667777654
No 40
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=95.27 E-value=0.46 Score=41.82 Aligned_cols=179 Identities=12% Similarity=0.067 Sum_probs=96.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
..+.+.++++|.+++..+.... .+. +.+...+ .....|+||+++...-...++.+.+ .+++++++|...
T Consensus 19 ~~i~~~~~~~gy~~~~~~~~~~---~~~~~~~~~~l-~~~~vdgvi~~~~~~~~~~~~~l~~---~~iPvv~~~~~~--- 88 (269)
T cd06297 19 EGIEGALLEQRYDLALFPLLSL---ARLKRYLESTT-LAYLTDGLLLASYDLTERLAERRLP---TERPVVLVDAEN--- 88 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCc---HHHHHHHHHHH-HhcCCCEEEEecCccChHHHHHHhh---cCCCEEEEccCC---
Confidence 4566677788988887643311 111 1222223 2357999999985422333343433 367899998632
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------------hhHHHHHHHhCCCeeEEEE
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------------SNEIEEGLSNRGFEVVRLN 208 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------------~~~L~~~L~~~G~~V~~~~ 208 (286)
. ++..........+...++.|.+. .+++.++.+... ..-+.+.+++.|..+....
T Consensus 89 ---~------~~~~v~~d~~~~g~~a~~~L~~~---~~~i~~i~~~~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~ 156 (269)
T cd06297 89 ---P------RFDSFYLDNRLGGRLAGAYLADF---PGRIGAITVEEEPDRAFRRTVFAERRAGFQQALKDAGRPFSPDL 156 (269)
T ss_pred ---C------CCCEEEECcHHHHHHHHHHHHHh---CCceEEEeCccccccccccccHHHHHHHHHHHHHHcCCCCChhh
Confidence 1 22222222223345555666654 267877755332 2345667788887765433
Q ss_pred eeeeecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 209 TYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 209 vY~~~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
++..........+.... + ..+++|++.+-..+-..+..+.+.+. .++.+++++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vP~di~vvg~d~~ 218 (269)
T cd06297 157 LAITDHSEEGGRLAMRHLLEKASPPLAVFASADQQALGALQEAVELGLTVGEDVRVVGFDDH 218 (269)
T ss_pred EEeCCCChhhHHHHHHHHHcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEECCc
Confidence 33322111111122222 2 35899999998888777777765432 24667777554
No 41
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.20 E-value=0.26 Score=43.13 Aligned_cols=181 Identities=11% Similarity=0.033 Sum_probs=94.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (286)
.+.+.+++.|+++.......-. ....++.+.+ ....+|+||++++..-...++.+. ..+++++++|.....
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~--~~~~~~i~~l-~~~~~dgiii~~~~~~~~~~~~~~---~~~ipvV~i~~~~~~--- 90 (270)
T cd06296 20 GVEEAAAAAGYDVVLSESGRRT--SPERQWVERL-SARRTDGVILVTPELTSAQRAALR---RTGIPFVVVDPAGDP--- 90 (270)
T ss_pred HHHHHHHHcCCeEEEecCCCch--HHHHHHHHHH-HHcCCCEEEEecCCCChHHHHHHh---cCCCCEEEEecccCC---
Confidence 4455667788887654332111 0011112222 135799999987653222233332 347899999865311
Q ss_pred HhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecC
Q 023179 144 EVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 144 ~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (286)
.. .+.. +.+. ...++...+.|.+. ..+++.++.|... ..-+.+.+++.|..+....++.....
T Consensus 91 ~~------~~~~-v~~d~~~~~~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~ 161 (270)
T cd06296 91 DA------DVPS-VGATNWAGGLAATEHLLEL--GHRRIGFITGPPDLLCSRARLDGYRAALAEAGIPVDPALVREGDFS 161 (270)
T ss_pred CC------CCCE-EEeCcHHHHHHHHHHHHHc--CCCcEEEEcCCCcchhHHHHHHHHHHHHHHcCCCCChHHheeCCCC
Confidence 01 2111 1121 12345555565553 3468998877644 23456677777766543333322221
Q ss_pred CCCcHHHHHH----cCCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 216 HHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 216 ~~~~~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
.....+..+. -..+++|++.+...+..++..+.+.+. .++.+++++.
T Consensus 162 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~p~~i~v~~~d~ 215 (270)
T cd06296 162 TESGFRAAAELLALPERPTAIFAGNDLMALGVYEAARERGLRIPEDLSVVGFDD 215 (270)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCCCceEEEEECC
Confidence 1111112222 146899999999888888888776542 2455666654
No 42
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.18 E-value=0.26 Score=43.19 Aligned_cols=182 Identities=11% Similarity=0.001 Sum_probs=94.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHH-----HHHHHHHHHHHcCCCCcEEEEECh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~-----av~~~~~~l~~~~~~~~~i~aVG~ 136 (286)
..+.+.+++.|++++..+. ...++ ..++.+.+ ....+|+||+++.. +....++.+.+ .+++++++|.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l-~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~---~~ipvV~i~~ 91 (273)
T cd06292 19 EAIEAALAQYGYTVLLCNT---YRGGVSEADYVEDL-LARGVRGVVFISSLHADTHADHSHYERLAE---RGLPVVLVNG 91 (273)
T ss_pred HHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHH-HHcCCCEEEEeCCCCCcccchhHHHHHHHh---CCCCEEEEcC
Confidence 4556667788988764322 11111 11222333 13578999997632 22233444433 4788999987
Q ss_pred hhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEe
Q 023179 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~v 209 (286)
.... .. .+..+..-....+..+++.|.+. ..++++++.|... ...+.+.++++|..+....+
T Consensus 92 ~~~~---~~------~~~~V~~d~~~~~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~i 160 (273)
T cd06292 92 RAPP---PL------KVPHVSTDDALAMRLAVRHLVAL--GHRRIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALV 160 (273)
T ss_pred CCCC---CC------CCCEEEECcHHHHHHHHHHHHHC--CCceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhe
Confidence 5421 01 22222221223345556666654 3468888876532 23456677788765433222
Q ss_pred eeeecCCCCcHHHHHH-c-CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 210 YTTEPVHHVDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 210 Y~~~~~~~~~~~~~~~-~-~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
+..........+..++ + ..+++|++.+...+..++..+.+.+. .++.+++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~a~g~~~~l~~~g~~ip~di~ii~~d~ 218 (273)
T cd06292 161 ARGMFSVEGGQAAAVELLGSGPTAIVAASDLMALGAIRAARRRGLRVPEDVSVVGYDD 218 (273)
T ss_pred EeCCCCHHHHHHHHHHHhcCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeeCC
Confidence 2222111111222222 2 24899999988877777777665432 2456666654
No 43
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.17 E-value=1.6 Score=39.70 Aligned_cols=214 Identities=16% Similarity=0.140 Sum_probs=121.7
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeee-CCC--chHHHHHHhcCCCccEEEEeCH----HHH--------
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQ-GPD--TDRLSSVLNADTIFDWIIITSP----EAG-------- 114 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~-~~~--~~~l~~~l~~~~~~d~IvFTS~----~av-------- 114 (286)
|++|.|.-+..+.-++++.|.++|+.|..+-+=.... ... ...+.+. .+...|.||+-=| .+-
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLEL--DLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhh--hhccCCEEEECCccccCCceEecccccC
Confidence 5788888888888999999999999976553311100 000 1111121 1466788876433 221
Q ss_pred -----HHHHHHHHHcCCCCcEEEEEChhhH---HHHHHhhhccCCCCcee------ccC---CCCCHHHHHHhcccC---
Q 023179 115 -----SVFLEAWKEAGTPNVRIGVVGAGTA---SIFEEVIQSSKCSLDVA------FSP---SKATGKILASELPKN--- 174 (286)
Q Consensus 115 -----~~~~~~l~~~~~~~~~i~aVG~~Ta---~~L~~~~~~~~~G~~~~------~~~---~~~~~e~L~~~L~~~--- 174 (286)
+.+++.+ +...+++.|-.+. +++++. |+.+. .++ ...+++.-+..+.+.
T Consensus 79 ~~~l~~~~l~~~-----~~~~~~~~G~~~~~l~~~a~~~------gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~ 147 (287)
T TIGR02853 79 KVVLTPELLEST-----KGHCTIYVGISNPYLEQLAADA------GVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDF 147 (287)
T ss_pred CccccHHHHHhc-----CCCCEEEEecCCHHHHHHHHHC------CCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCC
Confidence 1122222 2333455554333 366677 98886 222 124455544433332
Q ss_pred CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCC-----------CcHHHHHHcCCCCEEEEeChHHH--H
Q 023179 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-----------VDQTVLKQALSIPVVAVASPSAV--R 241 (286)
Q Consensus 175 ~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~-----------~~~~~~~~~~~~d~IvftS~sav--~ 241 (286)
...+++++++........+...|...|.+| .+|.+.+... ......+.+.+.|+|+.+.|..+ +
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~~V---~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~ 224 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGARV---FVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTA 224 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCCEE---EEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCH
Confidence 236789999988777788999999999754 4555543210 01111222468999999998764 2
Q ss_pred HHHHHhccccCCCceEEEe----CHHHHHHHHHcCCCeEEeCCCCC
Q 023179 242 SWVNLISDTEQWSNSVACI----GETTASAAKRLGLKNVYYPTHPG 283 (286)
Q Consensus 242 ~~~~~~~~~~~~~~~iv~I----G~~Ta~~l~~~G~~~v~~~~~ps 283 (286)
..++.++. +..++=+ |.+--+++++.|.+.+..|.-|.
T Consensus 225 ~~l~~~k~----~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glPg 266 (287)
T TIGR02853 225 DVLSKLPK----HAVIIDLASKPGGTDFEYAKKRGIKALLAPGLPG 266 (287)
T ss_pred HHHhcCCC----CeEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCCc
Confidence 22333322 2222211 44445899999999887776554
No 44
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=95.15 E-value=0.57 Score=40.86 Aligned_cols=182 Identities=10% Similarity=0.057 Sum_probs=98.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
.+.+.++++|+++....... .++ ..++.+.+ ....+|.||+.+...-......+.+ .++++++++....
T Consensus 20 ~~~~~~~~~g~~~~~~~~~~---~~~~~~~~i~~l-~~~~vdgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~--- 89 (264)
T cd06274 20 RLEALARERGYQLLIACSDD---DPETERETVETL-IARQVDALIVAGSLPPDDPYYLCQK---AGLPVVALDRPGD--- 89 (264)
T ss_pred HHHHHHHHCCCEEEEEeCCC---CHHHHHHHHHHH-HHcCCCEEEEcCCCCchHHHHHHHh---cCCCEEEecCccC---
Confidence 44466778898887654321 111 11222222 1357899999876421111333333 4678999987642
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecC
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (286)
.. ++..+..-....+..+++.|.+. +.++++++.|... ..-+.+.++++|..+....++.....
T Consensus 90 -~~------~~~~V~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~ 160 (264)
T cd06274 90 -PS------RFPSVVSDNRDGAAELTRELLAA--PPEEVLFLGGLPELSPSRERLAGFRQALADAGLPVQPDWIYAEGYS 160 (264)
T ss_pred -CC------CCCEEEEccHHHHHHHHHHHHHC--CCCcEEEEeCCCcccchHHHHHHHHHHHHHcCCCCCcceeecCCCC
Confidence 12 22221211112234456666653 3468999977654 23456677788765544444433222
Q ss_pred CCCcHHHHHH----c-CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHHH
Q 023179 216 HHVDQTVLKQ----A-LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (286)
Q Consensus 216 ~~~~~~~~~~----~-~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~T 264 (286)
.....+..++ . ..+++|++.+-..+.-++..+.+.+. .++.+++++...
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~ai~~~~d~~A~g~~~al~~~g~~ip~dv~v~g~d~~~ 217 (264)
T cd06274 161 PESGYQLMAELLARLGRLPRALFTTSYTLLEGVLRFLRERPGLAPSDLRIATFDDHP 217 (264)
T ss_pred hHHHHHHHHHHHccCCCCCcEEEEcChHHHHHHHHHHHHcCCCCCcceEEEEeCCHH
Confidence 1111112222 1 24899999998888777777776542 257788887653
No 45
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=95.15 E-value=0.39 Score=41.99 Aligned_cols=190 Identities=8% Similarity=-0.013 Sum_probs=96.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCH--HHHHHHHHHHHHcCCCCcEEEEEChhh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~--~av~~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
..+.+.++++|+++..++. ...++ .+.++..+ ...+|+||+.+. ......++.+.+ .++++++++...
T Consensus 19 ~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~l~~~~--~~~vdgii~~~~~~~~~~~~i~~~~~---~~ipvV~~~~~~ 90 (273)
T cd06305 19 AGTKAEAEALGGDLRVYDA---GGDDAKQADQIDQAI--AQKVDAIIIQHGRAEVLKPWVKRALD---AGIPVVAFDVDS 90 (273)
T ss_pred HHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHH--HcCCCEEEEecCChhhhHHHHHHHHH---cCCCEEEecCCC
Confidence 3455678889998776432 11111 11223333 247999999764 333444455544 367788887643
Q ss_pred HHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCC-CeeEEEEeee
Q 023179 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRG-FEVVRLNTYT 211 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~L~~~L~~~G-~~V~~~~vY~ 211 (286)
.. . ++..+.......+..+++.|.+.....+++.++.+... ...+.+.+++.| ..+.......
T Consensus 91 ~~----~------~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~ 160 (273)
T cd06305 91 DN----P------KVNNTTQDDYSLARLSLDQLVKDLGGKGNVGYVNVAGFPPLDRRYDVWQAVLKAYPGIKEVAELGDV 160 (273)
T ss_pred CC----C------ccceeeechHHHHHHHHHHHHHHhCCCCCEEEEEccCCchHHHHHHHHHHHHHHCCCcEEecccccc
Confidence 21 1 22211121222345555666553223468888876421 124566777766 4432211111
Q ss_pred eecCCCCcHHHHHH----cCCC--CEEEEeChHHHHHHHHHhccccC-CCceEEEeC--HHHHHHHHH
Q 023179 212 TEPVHHVDQTVLKQ----ALSI--PVVAVASPSAVRSWVNLISDTEQ-WSNSVACIG--ETTASAAKR 270 (286)
Q Consensus 212 ~~~~~~~~~~~~~~----~~~~--d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG--~~Ta~~l~~ 270 (286)
.........+..+. -..+ ++|+..+...+...+..+.+.+. .++.+++++ +.+.+.+.+
T Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~di~iig~d~~~~~~~~i~~ 228 (273)
T cd06305 161 SNNTAQDAAAQVEAVLKKYPKGGIDAIWAAWDEFAKGAKQALDEAGRTDEIKIYGVDISPEDLQLMRE 228 (273)
T ss_pred cccchhHHHHHHHHHHHHCCCcccCeEEEcChhhhHHHHHHHHHcCCCCCceEEEecCCHHHHHHHHc
Confidence 00011111111221 2346 88888888777777777766543 257777775 334444444
No 46
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=95.10 E-value=0.88 Score=41.23 Aligned_cols=179 Identities=15% Similarity=0.071 Sum_probs=92.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++..+.. ..+.+...+.++ ....+|.||+.+...-....+.+.+ .+++++.+|...
T Consensus 80 ~i~~~~~~~g~~~~i~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~--- 148 (329)
T TIGR01481 80 GIEDIATMYKYNIILSNS-----DEDPEKEVQVLNTLLSKQVDGIIFMGGTITEKLREEFSR---SPVPVVLAGTVD--- 148 (329)
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHh---cCCCEEEEecCC---
Confidence 344556678888765321 112121122221 1357899999765422333344433 367888887532
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~--------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
... ++..+..-....+..+++.|.+. ..+++.++.|... ..-+.+.|+++|..+....++...
T Consensus 149 -~~~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~ 219 (329)
T TIGR01481 149 -KEN------ELPSVNIDYKQATKEAVGELIAK--GHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGK 219 (329)
T ss_pred -CCC------CCCEEEECcHHHHHHHHHHHHHC--CCCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecC
Confidence 111 22221211112234455666553 3468988876432 133567788888876543333322
Q ss_pred cCCCCcHHHHHHc--CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 214 PVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 214 ~~~~~~~~~~~~~--~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
.......+..+.+ ..+++|++.+-..+..++..+.+.+. .++.+++++.
T Consensus 220 ~~~~~~~~~~~~ll~~~p~ai~~~~d~~A~g~~~al~~~g~~vP~dvsvvgfd~ 273 (329)
T TIGR01481 220 YSYDAGYKAFAELKGSLPTAVFVASDEMAAGILNAAMDAGIKVPEDLEVITSNN 273 (329)
T ss_pred CChHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEeeCC
Confidence 1111112222222 35799999998877777777765432 2455666654
No 47
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.06 E-value=1.3 Score=38.35 Aligned_cols=180 Identities=11% Similarity=0.092 Sum_probs=93.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
.+.+.++++|.++.... .. .+.+...+.++. ...+|.||+.+.. ... .++.+.. .+++++.++....
T Consensus 20 g~~~~a~~~g~~~~~~~---~~--~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~-~~~~~~~---~~ipvV~~~~~~~ 90 (268)
T cd06289 20 GLEEVLEEAGYTVFLAN---SG--EDVERQEQLLSTMLEHGVAGIILCPAAGTSPD-LLKRLAE---SGIPVVLVAREVA 90 (268)
T ss_pred HHHHHHHHcCCeEEEec---CC--CChHHHHHHHHHHHHcCCCEEEEeCCCCccHH-HHHHHHh---cCCCEEEEeccCC
Confidence 44466777888765432 11 122211222221 2578999998643 333 3344433 4678888875432
Q ss_pred HHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 023179 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
. . .+.....-....+..+++.|.+. ..++++++.+... ..-+.+.|++.|.++....++..
T Consensus 91 ~----~------~~~~v~~d~~~~~~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~ 158 (268)
T cd06289 91 G----A------PFDYVGPDNAAGARLATEHLISL--GHRRIAFIGGLEDSSTRRERLAGYRAALAEAGLPFDSELVVEG 158 (268)
T ss_pred C----C------CCCEEeecchHHHHHHHHHHHHC--CCCCEEEecCCccccchHHHHHHHHHHHHHcCCCCCchhEEec
Confidence 1 1 22211111122345555666554 3468988876543 24456778777754433333322
Q ss_pred ecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHHH
Q 023179 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETT 264 (286)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~T 264 (286)
..........++. + ..+++|+.++...+..++..+.+.+. .++.+++++...
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~al~~~g~~~p~di~iig~d~~~ 217 (268)
T cd06289 159 PPSRQGGAEAVAQLLDLPPRPTAIVCFNDLVAFGAMSGLRRAGLTPGRDIAVVGFDDVA 217 (268)
T ss_pred CcchhhHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecCch
Confidence 2111111122222 2 36899999999888777777776542 246677777643
No 48
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=95.04 E-value=0.32 Score=42.38 Aligned_cols=180 Identities=10% Similarity=-0.057 Sum_probs=93.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (286)
.+.+.++++|+++..++.-.-. .....+.+.+ ....+|.||+++...-.. ..... ..+++++.++..+..
T Consensus 21 ~i~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~l-~~~~~dgiii~~~~~~~~-~~~~~---~~~ipvv~~~~~~~~--- 90 (269)
T cd06288 21 GAQDAAREHGYLLLVVNTGGDD--ELEAEAVEAL-LDHRVDGIIYATMYHREV-TLPPE---LLSVPTVLLNCYDAD--- 90 (269)
T ss_pred HHHHHHHHCCCEEEEEeCCCCH--HHHHHHHHHH-HHcCCCEEEEecCCCChh-HHHHH---hcCCCEEEEecccCC---
Confidence 4456677788886654321110 0001111222 135789999987542221 11111 246888888865421
Q ss_pred HhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecCC
Q 023179 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (286)
Q Consensus 144 ~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~~ 216 (286)
. .+..+..-....+..+++.|.+. ..++++++.+... ..-+.+.++++|.++....++......
T Consensus 91 -~------~~~~v~~d~~~~~~~a~~~l~~~--g~~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~ 161 (269)
T cd06288 91 -G------ALPSVVPDEEQGGYDATRHLLAA--GHRRIAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGDWSA 161 (269)
T ss_pred -C------CCCeEEEccHHHHHHHHHHHHHc--CCceEEEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeCCCCh
Confidence 1 22221221223456666667654 3468999876654 223456777777655433333222111
Q ss_pred CCcHHHHHH----cCCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 217 HVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 217 ~~~~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
....+..++ -..+|+|+++|...+..++..+.+.+. .++.+++++.
T Consensus 162 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~di~v~g~d~ 214 (269)
T cd06288 162 DDGYEAAAALLDLDDRPTAIFCGNDRMAMGAYQALLERGLRIPQDVSVVGFDN 214 (269)
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHcCCCCcccceEEeeCC
Confidence 111111222 135899999999888777777765432 2455666554
No 49
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=95.04 E-value=0.14 Score=46.07 Aligned_cols=169 Identities=10% Similarity=0.110 Sum_probs=98.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
..+.+.++++|+.++.+. +...++.++..+.+ .-...|+||++|...- ..+.. +.+ .+.+++++|......
T Consensus 21 ~gIe~~a~~~Gy~l~l~~---t~~~~~~e~~i~~l-~~~~vDGiI~~s~~~~~~~l~~-~~~---~~iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 21 RGIEQEAREHGYQLLLCN---TGDDEEKEEYIELL-LQRRVDGIILASSENDDEELRR-LIK---SGIPVVLIDRYIDNP 92 (279)
T ss_dssp HHHHHHHHHTTCEEEEEE---ETTTHHHHHHHHHH-HHTTSSEEEEESSSCTCHHHHH-HHH---TTSEEEEESS-SCTT
T ss_pred HHHHHHHHHcCCEEEEec---CCCchHHHHHHHHH-HhcCCCEEEEecccCChHHHHH-HHH---cCCCEEEEEeccCCc
Confidence 345566778999887543 22211112222223 1267999999987655 33333 333 278999999874222
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCE-EEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT-VLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~r-vL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
. ++..+..-....+..+.+.|.+.. .++ ++++.+.... .-+.+.|+++|..+....++...
T Consensus 93 ---~------~~~~V~~D~~~a~~~a~~~Li~~G--h~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~ 161 (279)
T PF00532_consen 93 ---E------GVPSVYIDNYEAGYEATEYLIKKG--HRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEGD 161 (279)
T ss_dssp ---C------TSCEEEEEHHHHHHHHHHHHHHTT--CCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESS
T ss_pred ---c------cCCEEEEcchHHHHHHHHHHHhcc--cCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccccC
Confidence 2 444433322223445667776653 367 9999887642 24678899999988877776654
Q ss_pred cCCCCcHHHHHHc----CCCCEEEEeChHHHHHHHHHhccc
Q 023179 214 PVHHVDQTVLKQA----LSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 214 ~~~~~~~~~~~~~----~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
.......+..+++ ..+|+|++++-..+.-.+..+.+.
T Consensus 162 ~~~~~g~~~~~~ll~~~p~idai~~~nd~~A~ga~~~l~~~ 202 (279)
T PF00532_consen 162 FDYESGYEAARELLESHPDIDAIFCANDMMAIGAIRALRER 202 (279)
T ss_dssp SSHHHHHHHHHHHHHTSTT-SEEEESSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhCCCCEEEEEeCHHHHHHHHHHHHHc
Confidence 3222222222222 356799999988877766666554
No 50
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=95.01 E-value=0.31 Score=42.83 Aligned_cols=200 Identities=14% Similarity=0.084 Sum_probs=101.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
..+.+.++++|++++......-.. ...+.+...+ ...+|+||+.+.+. ....++.+.+ .+++++.++..-..
T Consensus 19 ~~~~~~a~~~g~~~~~~~~~~~~~-~~~~~i~~l~--~~~vdgiIi~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~~~ 92 (273)
T cd06309 19 KSIKDAAEKRGFDLKFADAQQKQE-NQISAIRSFI--AQGVDVIILAPVVETGWDPVLKEAKA---AGIPVILVDRGVDV 92 (273)
T ss_pred HHHHHHHHhcCCEEEEeCCCCCHH-HHHHHHHHHH--HcCCCEEEEcCCccccchHHHHHHHH---CCCCEEEEecCcCC
Confidence 456677778999998765432100 0011222322 25799999977542 2344455544 36788888853110
Q ss_pred HHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCC-CeeEEEEeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNTYT 211 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G-~~V~~~~vY~ 211 (286)
.... .....+.... ..+..+++.|.+.....++++++.+... ...+.+.|++++ .++ ..++.
T Consensus 93 -~~~~------~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~~~~--~~~~~ 163 (273)
T cd06309 93 -KDDS------LYVTFIGSDFVEEGRRAADWLAKATGGKGNIVELQGTVGSSVAIDRKKGFAEVIKKYPNMKI--VASQT 163 (273)
T ss_pred -ccCc------ceeeEecCChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEE--eeccC
Confidence 0000 1111122221 1234455555554223468999977543 245677787763 332 22222
Q ss_pred eecCCCCcHH----HHHHcC-CCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHHHH--HHHHHcCCCeEE
Q 023179 212 TEPVHHVDQT----VLKQAL-SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTA--SAAKRLGLKNVY 277 (286)
Q Consensus 212 ~~~~~~~~~~----~~~~~~-~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~Ta--~~l~~~G~~~v~ 277 (286)
.........+ +++.-. .+++|+.++-..+...+..+.+.+. .++.+++++.... ..+..-.+..+.
T Consensus 164 ~~~~~~~~~~~~~~~l~~~~~~~~aI~~~~d~~a~g~~~a~~~~g~~ip~di~iig~d~~~~~~~~~~~~~lt~~~ 239 (273)
T cd06309 164 GDFTRAKGKEVMEALLKAHGDDIDAVYAHNDEMALGAIQAIKAAGKKPGKDIKIVSIDGTKDAFQAMADGKLNATV 239 (273)
T ss_pred CcccHHHHHHHHHHHHHhCCCCccEEEECCcHHHHHHHHHHHHcCCCCCCCeEEEecCCCHHHHHHHHcCceEEEE
Confidence 2111111111 222112 5899999888888777776665542 2577888865533 245443444433
No 51
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.93 E-value=0.36 Score=42.28 Aligned_cols=183 Identities=15% Similarity=0.124 Sum_probs=95.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHH--HHHHHHHHHcCCCCcEEEEEChhh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av--~~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
..+.+.++++|+++..+.... ..+.+...+.++. ...+|+||+.+...- ...++.+.. .+++++.++...
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~ 92 (273)
T cd06310 19 AGAEAAAKELGVKVTFQGPAS---ETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEAKD---AGIPVVLIDSGL 92 (273)
T ss_pred HHHHHHHHHcCCEEEEecCcc---CCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHHHH---CCCCEEEecCCC
Confidence 345566778898887654211 1121222222211 257999999765421 223343333 467888887542
Q ss_pred HHHHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhC-CCeeEEEEe
Q 023179 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNR-GFEVVRLNT 209 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~-G~~V~~~~v 209 (286)
.. .. .+.. +.... ..+..+++.|.+.....++++++.+... ...+.+.+++. |+.+.. .
T Consensus 93 ~~---~~------~~~~-v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~a~~~~~~~~~~~--~ 160 (273)
T cd06310 93 NS---DI------AVSF-VATDNVAAGKLAAEALAELLGKKGKVAVISFVPGSSTTDQREEGFLEGLKEYPGIEIVA--T 160 (273)
T ss_pred CC---Cc------ceEE-EeeChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEe--c
Confidence 11 11 2222 12221 2345556666654323468999976543 23456788887 766543 2
Q ss_pred eeeecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCHH
Q 023179 210 YTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 263 (286)
Q Consensus 210 Y~~~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~~ 263 (286)
+..........+.... + ..+++|++.|...+..++..+.+.+. .++.+++++..
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~~l~~~g~~~di~vig~d~~ 219 (273)
T cd06310 161 QYSDSDYAKALDITEDLLTANPDLKGIFGANEGSAVGAARAVRQAGKAGKVKVVGFDAS 219 (273)
T ss_pred ccCCcCHHHHHHHHHHHHHhCCCceEEEecCchhHHHHHHHHHhcCCCCCeEEEEeCCC
Confidence 2211111111112222 1 35899999998888878777765432 24667776644
No 52
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.88 E-value=0.74 Score=40.82 Aligned_cols=177 Identities=10% Similarity=0.063 Sum_probs=96.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
..+.+.+++.|+++..++... +.+.+ ..+ .....|+||+++.......++.+.. .+++++++|....
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~-----~~~~~-~~~-~~~~~dgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~--- 90 (283)
T cd06279 24 AGVAEVLDAAGVNLLLLPASS-----EDSDS-ALV-VSALVDGFIVYGVPRDDPLVAALLR---RGLPVVVVDQPLP--- 90 (283)
T ss_pred HHHHHHHHHCCCEEEEecCcc-----HHHHH-HHH-HhcCCCEEEEeCCCCChHHHHHHHH---cCCCEEEEecCCC---
Confidence 345677788999988776532 11222 223 2467899999875332223444443 4678888886431
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCC------------------------ChhHHHHHHH
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK------------------------ASNEIEEGLS 198 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~------------------------~~~~L~~~L~ 198 (286)
. ++.....-....+..+++.|.+. ..+++.++.+.. ...-+.+.++
T Consensus 91 --~------~~~~v~~d~~~~g~~~~~~L~~~--g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~gf~~~~~ 160 (283)
T cd06279 91 --P------GVPSVGIDDRAAAREAARHLLDL--GHRRIGILGLRLGRDRNTGRVTDERLASATFSVARERLEGYLEALE 160 (283)
T ss_pred --C------CCCEEeeCcHHHHHHHHHHHHHc--CCCcEEEecCcccccccccccccccccccccccHHHHHHHHHHHHH
Confidence 2 22211111123345555666553 346888886642 1234567788
Q ss_pred hCCCeeEEEEeeeeecCC-CCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 199 NRGFEVVRLNTYTTEPVH-HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 199 ~~G~~V~~~~vY~~~~~~-~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
+.|.++....+|...... ....+..+. + ..+++|++.+-..+...+..+.+.+. .++.+++++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~gv~~al~~~g~~ip~di~vig~d~ 232 (283)
T cd06279 161 EAGIDISDVPIWEIPENDRASGEEAARELLDASPRPTAILCMSDVLALGALQVARELGLRVPEDLSVVGFDG 232 (283)
T ss_pred HcCCCCChheEEecCCCchHHHHHHHHHHHcCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEeeeCC
Confidence 888665544444321111 111122222 2 35789888887777666666655432 2456666654
No 53
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=94.82 E-value=0.52 Score=38.20 Aligned_cols=107 Identities=23% Similarity=0.395 Sum_probs=75.7
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-----HHHH
Q 023179 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-----SVFL 118 (286)
Q Consensus 49 ~g~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-----~~~~ 118 (286)
+..||++-.... .+.-+.+.|++.|++|++.++.++.. +-+.+++ .++.|.|+..|-.+- ..+.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~----e~v~aA~--~~dv~vIgvSsl~g~h~~l~~~lv 84 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPE----EAVRAAV--EEDVDVIGVSSLDGGHLTLVPGLV 84 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHH----HHHHHHH--hcCCCEEEEEeccchHHHHHHHHH
Confidence 356788776542 45788999999999999999998852 4455555 467899999887764 3345
Q ss_pred HHHHHcCCCCcEEEE---EChhhHHHHHHhhhccCCCCceeccCCCCCHHHH
Q 023179 119 EAWKEAGTPNVRIGV---VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKIL 167 (286)
Q Consensus 119 ~~l~~~~~~~~~i~a---VG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L 167 (286)
+.+.+.|.+.+.+++ +.+...+.|+++ |+.-.|.|...-.+.+
T Consensus 85 e~lre~G~~~i~v~~GGvip~~d~~~l~~~------G~~~if~pgt~~~~~~ 130 (143)
T COG2185 85 EALREAGVEDILVVVGGVIPPGDYQELKEM------GVDRIFGPGTPIEEAL 130 (143)
T ss_pred HHHHHhCCcceEEeecCccCchhHHHHHHh------CcceeeCCCCCHHHHH
Confidence 666777777777554 445566778988 9998888765333333
No 54
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=94.76 E-value=0.7 Score=40.10 Aligned_cols=180 Identities=9% Similarity=-0.011 Sum_probs=93.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
..+.+.++++|+++..+.. ..+.+...+.++ .....|+||++++..-....+.+ ..+++++.++....
T Consensus 19 ~~i~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~----~~~ipvv~~~~~~~- 88 (267)
T cd06284 19 KGIEDEAREAGYGVLLGDT-----RSDPEREQEYLDLLRRKQADGIILLDGSLPPTALTAL----AKLPPIVQACEYIP- 88 (267)
T ss_pred HHHHHHHHHcCCeEEEecC-----CCChHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHH----hcCCCEEEEecccC-
Confidence 5566777888988765432 112121222221 13578999998754222222222 13678888764321
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
.. .+.....-....+..+++.|.+. ..+++.++.+... ...+.+.++++|+++....++...
T Consensus 89 ---~~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~l~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~ 157 (267)
T cd06284 89 ---GL------AVPSVSIDNVAAARLAVDHLISL--GHRRIALITGPRDNPLARDRLEGYRQALAEAGLPADEELIQEGD 157 (267)
T ss_pred ---CC------CcceEEecccHHHHHHHHHHHHc--CCceEEEEcCCccchhHHHHHHHHHHHHHHcCCCCCcceEEeCC
Confidence 11 21111111223355566666654 3468988877533 234567888888665443333322
Q ss_pred cCCCCcHHHHHH----cCCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 214 PVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 214 ~~~~~~~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
.......+..+. -..+++|+++|...+..++..+.+.+. .++.+++++..
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~al~~~g~~~p~~v~v~g~d~~ 214 (267)
T cd06284 158 FSLESGYAAARRLLALPDRPTAIFCFSDEMAIGAISALKELGLRVPEDISVVGFDDI 214 (267)
T ss_pred CChHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCccceeEEEeCCH
Confidence 211111122222 135899999998887777777665432 24566666543
No 55
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.75 E-value=0.62 Score=40.59 Aligned_cols=178 Identities=9% Similarity=-0.012 Sum_probs=93.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+.+...+.. .+.+...+.++. -..+|.||+.+...-......+. .+++++.+|....
T Consensus 20 gi~~~~~~~gy~~~~~~~~-----~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~----~~iPvV~i~~~~~-- 88 (265)
T cd06290 20 GMERGLNGSGYSPIIATGH-----WNQSRELEALELLKSRRVDALILLGGDLPEEEILALA----EEIPVLAVGRRVP-- 88 (265)
T ss_pred HHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHh----cCCCEEEECCCcC--
Confidence 4456677889888765431 122222222222 35689999986532222223221 3688999986431
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
.. ++..+..-....+..+++.|.+. ..+++.++.+... ..-+.+.+.+.|..+....++....
T Consensus 89 --~~------~~~~V~~d~~~a~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~ 158 (265)
T cd06290 89 --GP------GAASIAVDNFQGGYLATQHLIDL--GHRRIAHITGPRGHIDARDRLAGYRKALEEAGLEVQPDLIVQGDF 158 (265)
T ss_pred --CC------CCCEEEECcHHHHHHHHHHHHHC--CCCeEEEEeCccccchhhHHHHHHHHHHHHcCCCCCHHHEEecCC
Confidence 12 32211111122345555666654 3478988877643 2335566777776654322222111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
........++. + ..+++|++++...+..+++.+.+.+. .++.+++++.
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~aii~~~~~~a~~~~~~l~~~g~~ip~di~vi~~d~ 213 (265)
T cd06290 159 EEESGLEAVEELLQRGPDFTAIFAANDQTAYGARLALYRRGLRVPEDVSLIGFDD 213 (265)
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEeeecC
Confidence 11111122222 2 35899999999888777777776542 2456666664
No 56
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=94.73 E-value=0.69 Score=40.29 Aligned_cols=183 Identities=11% Similarity=0.074 Sum_probs=93.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH-HHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a-v~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
..+.+.++++|+++.......... .....+.+.+ ....+|.||+++... ....++.+.+ .+++++.+|.....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~l-~~~~vdgiii~~~~~~~~~~~~~~~~---~~ipvv~i~~~~~~- 92 (270)
T cd01545 19 LGALDACRDTGYQLVIEPCDSGSP-DLAERVRALL-QRSRVDGVILTPPLSDNPELLDLLDE---AGVPYVRIAPGTPD- 92 (270)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCch-HHHHHHHHHH-HHCCCCEEEEeCCCCCccHHHHHHHh---cCCCEEEEecCCCC-
Confidence 345566778898877553321110 0112233333 235789999987642 2233344433 46789888865321
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
. .+..+.......+...++.|.+. +.++++++.+.... ..+.+.+++.|..+....++....
T Consensus 93 ---~------~~~~V~~d~~~~g~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~ 161 (270)
T cd01545 93 ---P------DSPCVRIDDRAAAREMTRHLIDL--GHRRIAFIAGPPDHRASAERLEGYRDALAEAGLPLDPELVAQGDF 161 (270)
T ss_pred ---C------CCCeEEeccHHHHHHHHHHHHHC--CCceEEEEeCCCCchhHHHHHHHHHHHHHHcCCCCChhhEEeCCC
Confidence 1 21111111122345555666554 35788888765542 235566777776653222222111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
......+.+++ + ..+++|++++...+..++..+.+.+. .++.+++++.
T Consensus 162 ~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~~~~~~~~~~g~~~p~~i~vig~d~ 216 (270)
T cd01545 162 TFESGLEAAEALLALPDRPTAIFASNDDMAAGVLAVAHRRGLRVPDDLSVVGFDD 216 (270)
T ss_pred ChhhHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 11111122222 2 35899999988887777777765431 2345555554
No 57
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=94.71 E-value=0.45 Score=43.14 Aligned_cols=179 Identities=13% Similarity=0.139 Sum_probs=93.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHH-HHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~a-v~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++..... ....+ ..++.+.+ ....+|.||+.+... ...+++.+.+ .+++++++|....
T Consensus 82 gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~~l~~---~~iPvV~v~~~~~-- 152 (328)
T PRK11303 82 YLERQARQRGYQLLIACS---DDQPDNEMRCAEHL-LQRQVDALIVSTSLPPEHPFYQRLQN---DGLPIIALDRALD-- 152 (328)
T ss_pred HHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHH-HHcCCCEEEEcCCCCCChHHHHHHHh---cCCCEEEECCCCC--
Confidence 344556678988765432 11111 11222223 135799999976421 1223444433 3678999986531
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
.. ++..+.......+..+++.|.+. ..++++++.+... ..-+.+.|+++|..+.. +|....
T Consensus 153 --~~------~~~~V~~d~~~~~~~a~~~L~~~--G~r~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~--~~~~~~ 220 (328)
T PRK11303 153 --RE------HFTSVVSDDQDDAEMLAESLLKF--PAESILLLGALPELSVSFEREQGFRQALKDDPREVHY--LYANSF 220 (328)
T ss_pred --CC------CCCEEEeCCHHHHHHHHHHHHHC--CCCeEEEEeCccccccHHHHHHHHHHHHHHcCCCceE--EEeCCC
Confidence 12 33322222223345556666654 3478999976542 24567888888875432 222111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
......+..+. + ..+++|++++-..+...+..+.+.+. .++.+++++..
T Consensus 221 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~disv~gfd~~ 276 (328)
T PRK11303 221 EREAGAQLFEKWLETHPMPDALFTTSYTLLQGVLDVLLERPGELPSDLAIATFGDN 276 (328)
T ss_pred ChHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEeCCh
Confidence 11111122222 2 35899999998777666666655431 24566666653
No 58
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=94.64 E-value=0.51 Score=41.05 Aligned_cols=191 Identities=12% Similarity=0.104 Sum_probs=107.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEECh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~~~~~d~IvFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~ 136 (286)
..+.+.+++.|.++..+ .....+.+ .+++.+ ...+|.||++.... ...+++.+.+ .+++++.+..
T Consensus 18 ~g~~~~a~~~g~~~~~~----~~~~~d~~~q~~~i~~~i--~~~~d~Iiv~~~~~~~~~~~l~~~~~---~gIpvv~~d~ 88 (257)
T PF13407_consen 18 KGAKAAAKELGYEVEIV----FDAQNDPEEQIEQIEQAI--SQGVDGIIVSPVDPDSLAPFLEKAKA---AGIPVVTVDS 88 (257)
T ss_dssp HHHHHHHHHHTCEEEEE----EESTTTHHHHHHHHHHHH--HTTESEEEEESSSTTTTHHHHHHHHH---TTSEEEEESS
T ss_pred HHHHHHHHHcCCEEEEe----CCCCCCHHHHHHHHHHHH--HhcCCEEEecCCCHHHHHHHHHHHhh---cCceEEEEec
Confidence 44566777889998877 11122222 333333 25699999875543 4556666665 3789999888
Q ss_pred hhHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCChh-------HHHHHHHhCCCeeEEEE
Q 023179 137 GTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKASN-------EIEEGLSNRGFEVVRLN 208 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~-------~L~~~L~~~G~~V~~~~ 208 (286)
. .... . .....+.+. ...+..+++.|.+....+.+++++.|..+.. -+.+.|++.+ .+..+.
T Consensus 89 ~--~~~~-~------~~~~~v~~d~~~~G~~~a~~l~~~~~~~~~v~~~~~~~~~~~~~~r~~g~~~~l~~~~-~~~~~~ 158 (257)
T PF13407_consen 89 D--EAPD-S------PRAAYVGTDNYEAGKLAAEYLAEKLGAKGKVLILSGSPGNPNTQERLEGFRDALKEYP-GVEIVD 158 (257)
T ss_dssp T--HHTT-S------TSSEEEEE-HHHHHHHHHHHHHHHHTTTEEEEEEESSTTSHHHHHHHHHHHHHHHHCT-TEEEEE
T ss_pred c--cccc-c------cceeeeeccHHHHHHHHHHHHHHHhccCceEEeccCCCCchHHHHHHHHHHHHHhhcc-eeeeee
Confidence 7 1111 1 111212221 1234556666665544447999887766532 4556777755 565565
Q ss_pred eeeeecCCCCcHH---HHHH-c--CCCCEEEEeChHHHHHHHHHhccccCC-CceEEEe--CHHHHHHHHHcCCC
Q 023179 209 TYTTEPVHHVDQT---VLKQ-A--LSIPVVAVASPSAVRSWVNLISDTEQW-SNSVACI--GETTASAAKRLGLK 274 (286)
Q Consensus 209 vY~~~~~~~~~~~---~~~~-~--~~~d~IvftS~sav~~~~~~~~~~~~~-~~~iv~I--G~~Ta~~l~~~G~~ 274 (286)
.|.. .....+. .... + .++++|+.++...+....+.+.+.+.. ...++++ .+.+.+.+++-.+.
T Consensus 159 ~~~~--~~~~~~~a~~~~~~~l~~~~~~~i~~~~~~~~~g~~~al~~~g~~~~~~v~g~d~~~~~~~~i~~g~~~ 231 (257)
T PF13407_consen 159 EYEY--TDWDPEDARQAIENLLQANPVDAIIACNDGMALGAAQALQQAGRAGKVIVVGFDGSPEALEAIKDGNIT 231 (257)
T ss_dssp EEEE--CTTSHHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEEECHHHHHHHHHTTSSS
T ss_pred eeec--cCCCHHHHHHHHHHhhhcCCceEEEeCCChHHHHHHHHHHHcCCcccceeecCCCCHHHHHHHHCCCCe
Confidence 4432 1222221 1111 1 248999999999988888888775432 3446665 34455555553333
No 59
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.59 E-value=0.56 Score=40.93 Aligned_cols=178 Identities=11% Similarity=0.060 Sum_probs=93.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
..+.+.++++|+.+...+. ..+.+...+.++ ....+|.|++.+...-...++.+.+ .+++++++|....
T Consensus 19 ~gi~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~~---~~iPvv~~~~~~~- 89 (265)
T cd06285 19 EGIEEAAAERGYSTFVANT-----GDNPDAQRRAIEMLLDRRVDGLILGDARSDDHFLDELTR---RGVPFVLVLRHAG- 89 (265)
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHH---cCCCEEEEccCCC-
Confidence 3556677788987643321 112222222221 1367999999865433223344433 3678999987531
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
.. ..+..-....+...++.|.+. ..+++.++.|... ...+.+.+++.|..+....++...
T Consensus 90 ---~~--------~~V~~d~~~ag~~a~~~L~~~--g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~ 156 (265)
T cd06285 90 ---TS--------PAVTGDDVLGGRLATRHLLDL--GHRRIAVLAGPDYASTARDRLAGFRAALAEAGIEVPPERIVYSG 156 (265)
T ss_pred ---CC--------CEEEeCcHHHHHHHHHHHHHC--CCccEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCC
Confidence 11 111111123345556666554 3468888877554 234566778888765432222211
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
..........++ + ..+++|++++...+..++..+.+.+. .++.+++++.
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d~ 212 (265)
T cd06285 157 FDIEGGEAAAEKLLRSDSPPTAIFAVNDFAAIGVMGAARDRGLRVPDDVALVGYND 212 (265)
T ss_pred CCHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecC
Confidence 111111112222 2 35799999999988777777765431 2344555543
No 60
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=94.58 E-value=0.37 Score=41.34 Aligned_cols=183 Identities=11% Similarity=0.066 Sum_probs=92.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH-HHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~-~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
..+.+.++++|+++..++.-... ....+.+.+.+ ...+|.||+.+...... .+..+.+ .+++++.++.....
T Consensus 19 ~g~~~~~~~~g~~l~~~~~~~~~-~~~~~~~~~~~--~~~~d~ii~~~~~~~~~~~~~~l~~---~~ip~v~~~~~~~~- 91 (264)
T cd01537 19 KGIEEAAKAAGYQVLLANSQNDA-EKQLSALENLI--ARGVDGIIIAPSDLTAPTIVKLARK---AGIPVVLVDRDIPD- 91 (264)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCH-HHHHHHHHHHH--HcCCCEEEEecCCCcchhHHHHhhh---cCCCEEEeccCCCC-
Confidence 44556677788776655432110 00011222333 24789999877553332 2333332 47888888877543
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
.. .+..........+..+++.|.+.. .++++++.+... ...+.+.+++.| .+....++....
T Consensus 92 --~~------~~~~v~~d~~~~~~~~~~~l~~~g--~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 160 (264)
T cd01537 92 --GD------RVPSVGSDNEQAGYLAGEHLAEKG--HRRIALLAGPLGSSTARERVAGFKDALKEAG-PIEIVLVQEGDW 160 (264)
T ss_pred --Cc------ccceEecCcHHHHHHHHHHHHHhc--CCcEEEEECCCCCCcHHHHHHHHHHHHHHcC-CcChhhhccCCC
Confidence 11 111111112234555666666543 478988877543 355677787777 222222222111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
......+.+.. + ..+|+|++++...+..++..+.+.+. .++.+++.+..
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~g~~i~~~i~i~~~d~~ 216 (264)
T cd01537 161 DAEKGYQAAEELLTAHPDPTAIFAANDDMALGALRALREAGLRVPDDISVIGFDGT 216 (264)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHhCCCCCCCeEEEeecCc
Confidence 11111112222 2 24899999987777767776665432 24566666543
No 61
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=94.58 E-value=1.1 Score=40.76 Aligned_cols=165 Identities=12% Similarity=0.079 Sum_probs=85.6
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH-HHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~a-v~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
+.+.++++|..+..++. . .+.+...+.++. ...+|+||+.+... ....++.+.+ .+++++.++...
T Consensus 86 i~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~---~~iPvV~~~~~~--- 154 (342)
T PRK10014 86 LTEALEAQGRMVFLLQG---G--KDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMAEE---KGIPVVFASRAS--- 154 (342)
T ss_pred HHHHHHHcCCEEEEEeC---C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHhh---cCCCEEEEecCC---
Confidence 44567778887654321 1 122222222222 35799999987542 2333444433 367888887532
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
... ++..+..-....+..+++.|.+. ..++++++.|.... .-+.+.|+++|..+....++....
T Consensus 155 -~~~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~ 225 (342)
T PRK10014 155 -YLD------DVDTVRPDNMQAAQLLTEHLIRN--GHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLECTS 225 (342)
T ss_pred -CCC------CCCEEEeCCHHHHHHHHHHHHHC--CCCEEEEEcCCcccccHHHHHHHHHHHHHHcCCCCCcceEecCCC
Confidence 111 22221111112345555666554 34799999775431 246778888887664433322111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhcc
Q 023179 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISD 249 (286)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~ 249 (286)
......+.... + ..+++|++.+-..+...+..+.+
T Consensus 226 ~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~~l~~ 264 (342)
T PRK10014 226 SQKQAAEAITALLRHNPTISAVVCYNETIAMGAWFGLLR 264 (342)
T ss_pred ChHHHHHHHHHHHcCCCCCCEEEECCcHHHHHHHHHHHH
Confidence 11111112222 2 35899999998877766665544
No 62
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=94.50 E-value=0.43 Score=41.81 Aligned_cols=178 Identities=10% Similarity=0.055 Sum_probs=93.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|.+++.... ...++ .....+.+ .....|+||+++...- ..+.+.+.+ .+++++.++....
T Consensus 20 ~i~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l-~~~~vdgii~~~~~~~~~~~~~~~~~---~~ipvV~i~~~~~-- 90 (269)
T cd06281 20 GAEDRLRAAGYSLLIANS---LNDPERELEILRSF-EQRRMDGIIIAPGDERDPELVDALAS---LDLPIVLLDRDMG-- 90 (269)
T ss_pred HHHHHHHHcCCEEEEEeC---CCChHHHHHHHHHH-HHcCCCEEEEecCCCCcHHHHHHHHh---CCCCEEEEecccC--
Confidence 445677788988775432 11111 11222223 1257899999875321 334444443 3678999986542
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
. .+..+..-....+..+++.|.+. ..++++++.+... ..-+.+.++++|..+.....|....
T Consensus 91 ---~------~~~~V~~d~~~~g~~a~~~l~~~--G~~~i~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~ 159 (269)
T cd06281 91 ---G------GADAVLFDHAAGMRQAVEYLISL--GHRRIALVGGGSNTRPGRERLEGYKAAFAAAGLPPDPALVRLSTP 159 (269)
T ss_pred ---C------CCCEEEECcHHHHHHHHHHHHHC--CCcEEEEecCccccccHHHHHHHHHHHHHHcCCCCCHHHeecCcH
Confidence 1 22221111122345556666554 3468998877532 2445678888887653222222211
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
.....+..+. + ..+++|+++|-..+...+..+.+.+. .++.+++.+.
T Consensus 160 -~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ip~dv~iig~d~ 213 (269)
T cd06281 160 -AASGFDATRALLALPDRPTAIIAGGTQVLVGVLRALREAGLRIPRDLSVISIGD 213 (269)
T ss_pred -HHHHHHHHHHHHcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcceeEEEecC
Confidence 1111112222 2 35899999888877777776665432 2455666663
No 63
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.35 E-value=0.5 Score=41.77 Aligned_cols=185 Identities=9% Similarity=0.021 Sum_probs=96.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
..+.+.++++|+++.....- .+.+...+.++. ....|.||+.+.. .....++.+.+ .+++++.++...
T Consensus 19 ~gi~~~~~~~G~~~~~~~~~-----~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~ 90 (272)
T cd06313 19 QAADEAGKLLGVDVTWYGGA-----LDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIA---RGIPVIDMGTLI 90 (272)
T ss_pred HHHHHHHHHcCCEEEEecCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHH---CCCcEEEeCCCC
Confidence 34556677889888765321 121222222221 3678999997542 22333344433 378899998653
Q ss_pred HHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCC-CeeEEEEe
Q 023179 139 ASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNT 209 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G-~~V~~~~v 209 (286)
... .. +....+... ...++.+++.|.+.....++++++.|... ..-+.+.|+++| .++.. .
T Consensus 91 ~~~--~~------~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~~~~~~~~~~~~--~ 160 (272)
T cd06313 91 APL--QI------NVHSFLAPDNYFMGASVAQALCNAMGGKGKIAMLQGALGHTGAQGRAQGFNDVIKKYPDIEVVD--E 160 (272)
T ss_pred CCC--CC------ceEEEECCCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCcchhHHHHHHHHHHHhCCCCEEEe--c
Confidence 210 11 211112222 22345556666554323468999977532 345667777775 43322 2
Q ss_pred eeeecCCCCcHHHHHH----cCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHH
Q 023179 210 YTTEPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTA 265 (286)
Q Consensus 210 Y~~~~~~~~~~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta 265 (286)
+..........+..+. -..+++|++++-..+...++.+.+.+..++.++.++..-.
T Consensus 161 ~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~~~g~~di~vvgfd~~~~ 220 (272)
T cd06313 161 QPANWDVSKAARIWETWLTKYPQLDGAFCHNDSMALAAYQIMKAAGRTKIVIGGVDGDPP 220 (272)
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHcCCCceEEEeecCCHH
Confidence 2111111111111221 2358999999988887777777665433577777765543
No 64
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=94.30 E-value=1.1 Score=39.02 Aligned_cols=180 Identities=9% Similarity=0.020 Sum_probs=92.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.+++.|+++..++ .. .+.+...+.++. ....|+||+++...-......+.. ..+++++++|....
T Consensus 20 gi~~~~~~~g~~~~~~~---~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~--~~~ipvV~i~~~~~-- 90 (269)
T cd06275 20 GVEQYCYRQGYNLILCN---TE--GDPERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLER--YRHIPMVVMDWGPE-- 90 (269)
T ss_pred HHHHHHHHcCCEEEEEe---CC--CChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHh--cCCCCEEEEecccC--
Confidence 44456677888876432 11 122222222221 257899999875432222232322 24788999986532
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
.. .+..+..-....++.+++.|.+. ..++++++.+... ..-+.+.++++|.++.....+....
T Consensus 91 --~~------~~~~V~~d~~~~~~~~~~~l~~~--G~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~ 160 (269)
T cd06275 91 --DD------FADKIQDNSEEGGYLATRHLIEL--GHRRIGCITGPLEKAPAQQRLAGFRRAMAEAGLPVNPGWIVEGDF 160 (269)
T ss_pred --CC------CCCeEeeCcHHHHHHHHHHHHHC--CCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCHHHhccCCC
Confidence 11 22211111122344555666554 3478999876543 2345678888887654322222111
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
......+..+. + ..+++|++++...+..++..+.+.+. .++.+++++.
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~vvg~d~ 215 (269)
T cd06275 161 ECEGGYEAMQRLLAQPKRPTAVFCGNDLMAMGALCAAQEAGLRVPQDLSIIGYDD 215 (269)
T ss_pred ChHHHHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHcCCCCCcceEEEEeCC
Confidence 11111122222 2 25899999998888777777765432 2456666654
No 65
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=94.27 E-value=0.89 Score=39.51 Aligned_cols=180 Identities=10% Similarity=0.002 Sum_probs=93.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
..+.+.++++|+.+..+..-...+ ....++.+.+ .-...|+||+.+...-......+. ..+++++++|....
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l-~~~~vdgiii~~~~~~~~~~~~~~---~~~ipvv~~~~~~~--- 90 (264)
T cd01574 19 AAIESAAREAGYAVTLSMLAEADE-EALRAAVRRL-LAQRVDGVIVNAPLDDADAALAAA---PADVPVVFVDGSPS--- 90 (264)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCch-HHHHHHHHHH-HhcCCCEEEEeCCCCChHHHHHHH---hcCCCEEEEeccCC---
Confidence 345667777888876542211100 1111222223 135799999987643322222222 24688999987542
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeeecC
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (286)
. .+.....-....+..+++.|.+. ..++++++.+.... .-+.+.|++.|+.+.. .+.....
T Consensus 91 --~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~--~~~~~~~ 158 (264)
T cd01574 91 --P------RVSTVSVDQEGGARLATEHLLEL--GHRTIAHVAGPEEWLSARARLAGWRAALEAAGIAPPP--VLEGDWS 158 (264)
T ss_pred --C------CCCEEEeCcHHHHHHHHHHHHHC--CCCEEEEEecCCccchHHHHHHHHHHHHHHCCCCcce--eeecCCC
Confidence 2 22221221123355566666654 34789999776542 2467778888876542 1221111
Q ss_pred CCCcHHHHHH-c--CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 216 HHVDQTVLKQ-A--LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 216 ~~~~~~~~~~-~--~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
.....+..+. + ..+++|+.++...+...+..+.+.+. .++.+++++.
T Consensus 159 ~~~~~~~~~~~l~~~~~~ai~~~~d~~a~g~~~~~~~~g~~ip~~i~ii~~d~ 211 (264)
T cd01574 159 AESGYRAGRELLREGDPTAVFAANDQMALGVLRALHELGLRVPDDVSVVGFDD 211 (264)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHHHHHcCCCCccceEEecccC
Confidence 1111122222 1 23899999888777777776665431 2456666654
No 66
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.26 E-value=0.99 Score=41.14 Aligned_cols=214 Identities=15% Similarity=0.152 Sum_probs=116.7
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeee---CCCc-hHHHHHHhcCCCccEEEEeCHH--------HH---
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQ---GPDT-DRLSSVLNADTIFDWIIITSPE--------AG--- 114 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~---~~~~-~~l~~~l~~~~~~d~IvFTS~~--------av--- 114 (286)
|+++.|.-...+.-++++.|.+.|++|...-+-...+ .... +..++. +...|.|++.-|- +.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~---~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEA---LSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHH---hccCCEEEECCccccCCceeeccccc
Confidence 6889999888888999999999999998622111111 0000 111222 4678999987442 11
Q ss_pred ------HHHHHHHHHcCCCCcEEE--EEChhhHHHHHHhhhccCCCCceeccCC---------CCCHHH-HHHhcccCC-
Q 023179 115 ------SVFLEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPS---------KATGKI-LASELPKNG- 175 (286)
Q Consensus 115 ------~~~~~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~~~---------~~~~e~-L~~~L~~~~- 175 (286)
..+++.+. +...++ ++-+...+.+++. |+.+...++ -.++++ +...+....
T Consensus 79 ~~~~~~~~~l~~l~----~~~~v~~G~~~~~~~~~~~~~------gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~~~ 148 (296)
T PRK08306 79 EKLVLTEELLELTP----EHCTIFSGIANPYLKELAKET------NRKLVELFERDDVAILNSIPTAEGAIMMAIEHTPI 148 (296)
T ss_pred cCCcchHHHHHhcC----CCCEEEEecCCHHHHHHHHHC------CCeEEEEeccchhhhhccHhHHHHHHHHHHHhCCC
Confidence 22333332 232222 2334445556666 888743332 133444 333332221
Q ss_pred -CCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCC-----------CcHHHHHHcCCCCEEEEeChHHH--H
Q 023179 176 -KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-----------VDQTVLKQALSIPVVAVASPSAV--R 241 (286)
Q Consensus 176 -~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~-----------~~~~~~~~~~~~d~IvftS~sav--~ 241 (286)
..+++++++........+...|+..|++| .+|.+.+... ..+...+.+...|+|+.|.|..+ +
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V---~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~ 225 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKALGANV---TVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTK 225 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEE---EEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhH
Confidence 25789999977666777889999999755 4444443210 00112223468999999988643 2
Q ss_pred HHHHHhccccCCCceEE--E--eCHHHHHHHHHcCCCeEEeCCCCC
Q 023179 242 SWVNLISDTEQWSNSVA--C--IGETTASAAKRLGLKNVYYPTHPG 283 (286)
Q Consensus 242 ~~~~~~~~~~~~~~~iv--~--IG~~Ta~~l~~~G~~~v~~~~~ps 283 (286)
..++.++. +..++ + -|.+--+++++.|.+.+..+.-|+
T Consensus 226 ~~l~~~~~----g~vIIDla~~pggtd~~~a~~~Gv~~~~~~~lpg 267 (296)
T PRK08306 226 EVLSKMPP----EALIIDLASKPGGTDFEYAEKRGIKALLAPGLPG 267 (296)
T ss_pred HHHHcCCC----CcEEEEEccCCCCcCeeehhhCCeEEEEECCCCc
Confidence 22223332 11111 1 134334577888988776565553
No 67
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=94.26 E-value=0.95 Score=38.84 Aligned_cols=179 Identities=11% Similarity=0.071 Sum_probs=90.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
..+.+.++++|+++...+. ...++ .+.++..+ -..+|.|++.....-...+..+.+ .++++++++.....
T Consensus 19 ~g~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~--~~~~d~iii~~~~~~~~~~~~~~~---~~ipvv~~~~~~~~ 90 (264)
T cd06267 19 RGIEEAAREAGYSVLLCNS---DEDPEKEREALELLL--SRRVDGIILAPSRLDDELLEELAA---LGIPVVLVDRPLDG 90 (264)
T ss_pred HHHHHHHHHcCCEEEEEcC---CCCHHHHHHHHHHHH--HcCcCEEEEecCCcchHHHHHHHH---cCCCEEEecccccC
Confidence 3445556677877765422 11110 12222222 257999998776533322333333 47788888765422
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
. .+...-......+..+++.|.+. ..++++++.+... ...+.+.+++.|..+....++...
T Consensus 91 ----~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~ 158 (264)
T cd06267 91 ----L------GVDSVGIDNRAGAYLAVEHLIEL--GHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGD 158 (264)
T ss_pred ----C------CCCEEeeccHHHHHHHHHHHHHC--CCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecc
Confidence 2 22211111122244455666553 3478998876654 234567777777544333332222
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeC
Q 023179 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIG 261 (286)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG 261 (286)
............ + ..+|+|+..+...+..+...+.+.+. .++.+++++
T Consensus 159 ~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~al~~~g~~~~~~i~i~~~d 213 (264)
T cd06267 159 FSEESGYEAARELLASGERPTAIFAANDLMAIGALRALRELGLRVPEDVSVVGFD 213 (264)
T ss_pred cchhhHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHHHHHhCCCCCCceEEEeeC
Confidence 111111222222 2 34899998887776666666655432 134555554
No 68
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=93.95 E-value=0.58 Score=40.63 Aligned_cols=178 Identities=14% Similarity=0.099 Sum_probs=91.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
..+.+.++++|+.+..+..-.. .+. +.++..+ ....|.||+++.......++.+.+ .+++++.+|..+..
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~---~~~~~~i~~~~--~~~vdgiii~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~- 89 (266)
T cd06278 19 EALSRALQARGYQPLLINTDDD---EDLDAALRQLL--QYRVDGVIVTSGTLSSELAEECRR---NGIPVVLINRYVDG- 89 (266)
T ss_pred HHHHHHHHHCCCeEEEEcCCCC---HHHHHHHHHHH--HcCCCEEEEecCCCCHHHHHHHhh---cCCCEEEECCccCC-
Confidence 3456777889988875543211 111 1222222 357999999865322222443433 47889999875421
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
. .+.....-....+..+++.|.+. ..++++++.+... ..-+.+.+++.|..+.. ..+.. .
T Consensus 90 ---~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~-~~~~~-~ 156 (266)
T cd06278 90 ---P------GVDAVCSDNYEAGRLAAELLLAK--GCRRIAFIGGPADTSTSRERERGFRDALAAAGVPVVV-EEAGD-Y 156 (266)
T ss_pred ---C------CCCEEEEChHHHHHHHHHHHHHC--CCceEEEEcCCCcccchHHHHHHHHHHHHHcCCChhh-hccCC-C
Confidence 1 22211111123345556666654 3469999987654 23466777777765321 11111 0
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhcccc-C---CCceEEEeCH
Q 023179 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTE-Q---WSNSVACIGE 262 (286)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~-~---~~~~iv~IG~ 262 (286)
......+.... + ..+++|+.++...+...++.+.+.. . .++.+++++.
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~l~~~~~~~~p~di~i~~~d~ 212 (266)
T cd06278 157 SYEGGYEAARRLLASRPRPDAIFCANDLLAIGVMDAARQEGGLRVPEDVSVIGFDD 212 (266)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHhcCCCCccceEEEEeCC
Confidence 00111111111 2 3589999998877766666665421 1 2355555543
No 69
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=93.89 E-value=0.79 Score=40.16 Aligned_cols=180 Identities=11% Similarity=0.053 Sum_probs=94.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHH-----HHHHHHHHHHcCCCCcEEEEEC
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEA-----GSVFLEAWKEAGTPNVRIGVVG 135 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~a-----v~~~~~~l~~~~~~~~~i~aVG 135 (286)
..+.+.++++|+++..... ....+ .+.++..+ ...+|+||+++... ...+++.+.+ .+++++.+|
T Consensus 19 ~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~--~~~vdgii~~~~~~~~~~~~~~~~~~~~~---~~ipvV~~~ 90 (273)
T cd01541 19 RGIESVLSEKGYSLLLAST---NNDPERERKCLENML--SQGIDGLIIEPTKSALPNPNIDLYLKLEK---LGIPYVFIN 90 (273)
T ss_pred HHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHH--HcCCCEEEEeccccccccccHHHHHHHHH---CCCCEEEEe
Confidence 3456677788988875432 11111 12233333 35799999986532 2233444433 367899888
Q ss_pred hhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEe
Q 023179 136 AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~v 209 (286)
.... .. ++..+..-....+..+++.|.+. ..++++++.+... ...+.+.|++.|..+....+
T Consensus 91 ~~~~----~~------~~~~V~~D~~~~g~~~~~~l~~~--G~~~i~~l~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~ 158 (273)
T cd01541 91 ASYE----EL------NFPSLVLDDEKGGYKATEYLIEL--GHRKIAGIFKADDLQGVKRMKGFIKAYREHGIPFNPSNV 158 (273)
T ss_pred cCCC----CC------CCCEEEECcHHHHHHHHHHHHHc--CCcCEEEecCCCcccHHHHHHHHHHHHHHcCCCCChHHE
Confidence 6431 11 22211111223345566666654 2367877755322 22356788888865433323
Q ss_pred eeeecCC--CCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 210 YTTEPVH--HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 210 Y~~~~~~--~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
+...... ....+..++ + ..+|+|+++|-..+..++..+.+.+. .++.+++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~l~~~~~~~av~~~~d~~a~g~~~al~~~g~~~p~dv~vvg~d~ 220 (273)
T cd01541 159 ITYTTEEKEEKLFEKIKEILKRPERPTAIVCYNDEIALRVIDLLKELGLKIPEDISVVGFDD 220 (273)
T ss_pred EeccccchhhHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCcEEEEEcCC
Confidence 2211111 111122222 2 35899999998888877777765432 2456666644
No 70
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=93.89 E-value=0.83 Score=40.71 Aligned_cols=185 Identities=10% Similarity=0.050 Sum_probs=92.6
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
+.+.+++.|+++..+.. ....++ .+.+...+ ....|.||+.+.. .....++.+.+ .+++++.++.....
T Consensus 21 i~~~a~~~g~~~~~~~~--~~~~~~~~~~~l~~~~--~~~~dgiii~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~~~ 93 (294)
T cd06316 21 AKDEFAKLGIEVVATTD--AQFDPAKQVADIETTI--SQKPDIIISIPVDPVSTAAAYKKVAE---AGIKLVFMDNVPSG 93 (294)
T ss_pred HHHHHHHcCCEEEEecC--CCCCHHHHHHHHHHHH--HhCCCEEEEcCCCchhhhHHHHHHHH---cCCcEEEecCCCcc
Confidence 45667788988874311 111111 11222223 3578999886533 23444555544 36788888764321
Q ss_pred HHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
+... .++...+... ...+..+++.|.+.....+++.++.+... ..-+.+.|++++..+..+.....
T Consensus 94 -~~~~-----~~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~ 167 (294)
T cd06316 94 -LEHG-----KDYAGIVTDDNYGNGQIAADALAKALPGKGKVGLIYHGADYFVTNQRDQGFKETIKKNYPDITIVAEKGI 167 (294)
T ss_pred -cccC-----cceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCcccHHHHHHHHHHHHHHhCCCcEEEeecCC
Confidence 1100 0111111111 22234445555544223478988877543 23455667655532222211111
Q ss_pred ecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHH
Q 023179 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 263 (286)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~ 263 (286)
. ......+..+. + ..+++|+.++-..+...++.+.+.+..++.++++|..
T Consensus 168 ~-~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~di~vvg~d~~ 221 (294)
T cd06316 168 D-GPSKAEDIANAMLTQNPDLKGIYAVWDVPAEGVIAALRAAGRDDIKVTTVDLG 221 (294)
T ss_pred c-chhHHHHHHHHHHHhCCCeeEEEeCCCchhHHHHHHHHHcCCCCceEEEeCCC
Confidence 1 01111112222 2 3578999998888888888887665446788888753
No 71
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=93.83 E-value=1.4 Score=40.09 Aligned_cols=181 Identities=10% Similarity=0.019 Sum_probs=93.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
..+.+.++++|++++.++.. .+.+...+.++ .....|+||+.....-...++.+.+ ..+++++.++....
T Consensus 79 ~gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~--~~~iPvV~~d~~~~- 150 (341)
T PRK10703 79 EAVEKNCYQKGYTLILCNAW-----NNLEKQRAYLSMLAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGEA- 150 (341)
T ss_pred HHHHHHHHHCCCEEEEEeCC-----CCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHh--cCCCCEEEEecccC-
Confidence 34455667789887655321 12121112221 1356899998764322233444433 13678888874321
Q ss_pred HHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
.. ++...+.+.. ..+...++.|.+. ..++++++.|... ..-+.+.|+++|+++....++..
T Consensus 151 ---~~------~~~~~v~~d~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~gi~~~~~~~~~~ 219 (341)
T PRK10703 151 ---KA------DFTDAIIDNAFEGGYLAGRYLIER--GHRDIGVIPGPLERNTGAGRLAGFMKAMEEANIKVPEEWIVQG 219 (341)
T ss_pred ---Cc------CCCCeEEECcHHHHHHHHHHHHHC--CCCcEEEEeCCccccchHHHHHHHHHHHHHcCCCCChHHeEeC
Confidence 11 2111122221 1245566666554 3468999876543 23456788888877654323322
Q ss_pred ecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
...........+. + ..+++|++++...+...+..+.+.+. .++.+++++.
T Consensus 220 ~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~~~g~~ip~dv~vvgfD~ 276 (341)
T PRK10703 220 DFEPESGYEAMQQILSQKHRPTAVFCGGDIMAMGAICAADEMGLRVPQDISVIGYDN 276 (341)
T ss_pred CCCHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 1111111122222 2 35899999999888878777765431 2455666543
No 72
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=93.54 E-value=1.8 Score=37.79 Aligned_cols=180 Identities=9% Similarity=0.085 Sum_probs=94.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHH-HHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~-av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++..+... ...+ ...+.+.+ ....+|.||+++.. .-..+.+ +.. .+.+++++|.....
T Consensus 20 gi~~~~~~~gy~v~~~~~~---~~~~~~~~~i~~~-~~~~~dgiii~~~~~~~~~~~~-~~~---~~~pvV~i~~~~~~- 90 (269)
T cd06293 20 AVEEEADARGLSLVLCATR---NRPERELTYLRWL-DTNHVDGLIFVTNRPDDGALAK-LIN---SYGNIVLVDEDVPG- 90 (269)
T ss_pred HHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHH-HHCCCCEEEEeCCCCCHHHHHH-HHh---cCCCEEEECCCCCC-
Confidence 4456777889888654322 1111 11222223 23579999998532 1122222 222 36789999965321
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
. .+..+..-....+...++.|.+. ..++++++.+... ..-+.+.|+++|..+....++....
T Consensus 91 ---~------~~~~V~~d~~~~~~~~~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~~~ 159 (269)
T cd06293 91 ---A------KVPKVFCDNEQGGRLATRHLARA--GHRRIAFVGGPDALISARERYAGYREALAEAHIPEVPEYVCFGDY 159 (269)
T ss_pred ---C------CCCEEEECCHHHHHHHHHHHHHC--CCceEEEEecCcccccHHHHHHHHHHHHHHcCCCCChheEEecCC
Confidence 1 21111211122345566666654 3478998876533 2446678888887654333332221
Q ss_pred CCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 215 VHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 215 ~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
......+.... + ..+++|++.+-..+...+..+.+.+. .++.+++++..
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vp~di~i~g~d~~ 215 (269)
T cd06293 160 TREFGRAAAAQLLARGDPPTAIFAASDEIAIGLLEVLRERGLSIPGDMSLVGFDDV 215 (269)
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCccceEEEeecCc
Confidence 11111122222 1 35899999998877777666665432 25678888764
No 73
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.53 E-value=1.8 Score=34.53 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=72.2
Q ss_pred CCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH-----HHHHHH
Q 023179 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFLE 119 (286)
Q Consensus 50 g~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a-----v~~~~~ 119 (286)
..+|++-.... +..-....|+..|++|+......... +-++.+. ..+.|.|+++|-.+ +..+.+
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e----~~v~aa~--e~~adii~iSsl~~~~~~~~~~~~~ 75 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPE----EIARQAV--EADVHVVGVSSLAGGHLTLVPALRK 75 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHH----HHHHHHH--HcCCCEEEEcCchhhhHHHHHHHHH
Confidence 35666665544 24567788899999999998874431 2333444 35789999988663 455566
Q ss_pred HHHHcCCCCcEEEEEC---hhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 120 AWKEAGTPNVRIGVVG---AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 120 ~l~~~~~~~~~i~aVG---~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
.+++.+...+++++=| +.-.+.|++. |+.-.+.|. .+.+.+++.+.+
T Consensus 76 ~L~~~g~~~i~vivGG~~~~~~~~~l~~~------Gvd~~~~~g-t~~~~i~~~l~~ 125 (132)
T TIGR00640 76 ELDKLGRPDILVVVGGVIPPQDFDELKEM------GVAEIFGPG-TPIPESAIFLLK 125 (132)
T ss_pred HHHhcCCCCCEEEEeCCCChHhHHHHHHC------CCCEEECCC-CCHHHHHHHHHH
Confidence 6777666666666543 3345667777 998766554 466676666644
No 74
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=93.49 E-value=2.5 Score=36.90 Aligned_cols=160 Identities=17% Similarity=0.031 Sum_probs=84.3
Q ss_pred CCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCC
Q 023179 101 TIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKK 178 (286)
Q Consensus 101 ~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~ 178 (286)
..+|.||+.+.. .....++.+.+ .++++++++..... . .+..........+..+++.|.+.....
T Consensus 59 ~~vdgiIi~~~~~~~~~~~l~~~~~---~~iPvv~~~~~~~~----~------~~~~v~~d~~~~g~~~~~~l~~~~~g~ 125 (272)
T cd06300 59 QGVDAIIINPASPTALNPVIEEACE---AGIPVVSFDGTVTT----P------CAYNVNEDQAEFGKQGAEWLVKELGGK 125 (272)
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHH---CCCeEEEEecCCCC----C------ceeEecCCHHHHHHHHHHHHHHHcCCC
Confidence 589999997643 33333444443 47888888754211 1 111111111223455666666543345
Q ss_pred CEEEEEcCCCC-------hhHHHHHHHhCC-CeeEEEEeeeeecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHH
Q 023179 179 CTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNTYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNL 246 (286)
Q Consensus 179 ~rvL~~~g~~~-------~~~L~~~L~~~G-~~V~~~~vY~~~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~ 246 (286)
++++++.|... ...+.+.+.++| .++.. ++..........+.... + ..+++|++.+.. +-..+..
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~-A~g~~~a 202 (272)
T cd06300 126 GNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIKIVG--EVYGDWDQAVAQKAVADFLASNPDVDGIWTQGGD-AVGAVQA 202 (272)
T ss_pred ceEEEEECCCCCcchHHHHHHHHHHHHHCCCcEEEe--ecCCCCCHHHHHHHHHHHHHhCCCcCEEEecCCC-cHHHHHH
Confidence 78998876432 245677888777 66542 22111111111112222 1 358999999888 7777777
Q ss_pred hccccCCCceEEEeCHHHHHH---HHHcCCCeE
Q 023179 247 ISDTEQWSNSVACIGETTASA---AKRLGLKNV 276 (286)
Q Consensus 247 ~~~~~~~~~~iv~IG~~Ta~~---l~~~G~~~v 276 (286)
+.+.+..-..+++++...... +..-++..+
T Consensus 203 l~~~g~~~p~v~g~d~~~~~~~~~~~~~~ltti 235 (272)
T cd06300 203 FEQAGRDIPPVTGEDENGFLRWRLWKDKGLKGI 235 (272)
T ss_pred HHHcCCCCcEEEeeCCcHHHHHHhhhccCceeE
Confidence 766543223566666554333 334455544
No 75
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=93.43 E-value=1.3 Score=38.86 Aligned_cols=184 Identities=11% Similarity=0.056 Sum_probs=92.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
..+.+.++++|+++..... ..+.+...+.++. ....|+||+++.. ++...++.+.+ .++++++++...
T Consensus 19 ~~i~~~~~~~g~~v~~~~~-----~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~---~~iPvV~~~~~~ 90 (282)
T cd06318 19 EAAKAHAKALGYELISTDA-----QGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKA---AGVPVVVVDSSI 90 (282)
T ss_pred HHHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHH---CCCCEEEecCCC
Confidence 3455677789988764322 1121211122211 3578999997643 32333444433 478899998642
Q ss_pred HHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccC-CCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeE---E
Q 023179 139 ASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKN-GKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVV---R 206 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~-~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~---~ 206 (286)
.... . .+.. +... ...++.+++.|.+. ..++++++++.+... ..-+.+.|+++|.... .
T Consensus 91 ~~~~--~------~~~~-v~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~ 161 (282)
T cd06318 91 NLEA--G------VVTQ-VQSSNAKNGNLVGEWVVGELGDKPMKIILLSGDAGNLVGQARRDGFLLGVSEAQLRKYGKTN 161 (282)
T ss_pred CCCc--C------eEEE-EecCcHHHHHHHHHHHHHHhCCCCceEEEEECCCCCchHhHHHHhHHHHHhhCcccccccCC
Confidence 1000 0 1111 1111 22355666666553 323458998876433 3346677777764211 1
Q ss_pred EEeeeeecCCCCcHH-------HHHHcCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCHH
Q 023179 207 LNTYTTEPVHHVDQT-------VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 263 (286)
Q Consensus 207 ~~vY~~~~~~~~~~~-------~~~~~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~~ 263 (286)
+.++........... ++.....+|+|++.+-..+..++..+.+.+. .++.+++++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~dv~vvg~d~~ 226 (282)
T cd06318 162 FTIVAQGYGDWTREGGLKAMEDLLVAHPDINVVYSENDDMALGAMRVLAEAGKTDDVKVAAADGQ 226 (282)
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHHhCCCcCEEEECCcchHHHHHHHHHHcCCCCCeEEEecCCC
Confidence 111111111111111 1211235899999988777777777666532 35677777543
No 76
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=93.37 E-value=1.5 Score=38.02 Aligned_cols=180 Identities=14% Similarity=0.037 Sum_probs=90.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
.+.+.++++|+++..++. . .+.+...+.++. ...+|.||+.+... ...+++.+.. .+++++.++..-.
T Consensus 20 ~i~~~~~~~g~~v~~~~~---~--~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~---~~ipvv~~~~~~~ 91 (268)
T cd06323 20 GAQKEAKELGYELTVLDA---Q--NDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANE---AGIPVFTIDREAN 91 (268)
T ss_pred HHHHHHHHcCceEEecCC---C--CCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHH---CCCcEEEEccCCC
Confidence 455667788888865433 1 122222222222 24699999976432 2234444443 3688888875421
Q ss_pred HHHHHhhhccCCCCceecc-CCCC-CHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhC-CCeeEEEEe
Q 023179 140 SIFEEVIQSSKCSLDVAFS-PSKA-TGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNR-GFEVVRLNT 209 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~-~~~~-~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~-G~~V~~~~v 209 (286)
. +.....+ .... .+..+++.|.+.....++++++.|... ..-+.+.|+++ |.++.....
T Consensus 92 -----~------~~~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~ 160 (268)
T cd06323 92 -----G------GEVVSQIASDNVAGGKMAAEYLVKLLGGKGKVVELQGIPGASAARERGKGFHEVVDKYPGLKVVASQP 160 (268)
T ss_pred -----C------CceEEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEEeccc
Confidence 0 1111112 2222 245566666654223468888866432 23455777774 665432111
Q ss_pred eeeecCCCCcHHHHH---HcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHH
Q 023179 210 YTTEPVHHVDQTVLK---QALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 263 (286)
Q Consensus 210 Y~~~~~~~~~~~~~~---~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~ 263 (286)
+.... +...+.+.+ .-..+++|++++...+...+..+.+.+..++.+++++..
T Consensus 161 ~~~~~-~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~di~iig~d~~ 216 (268)
T cd06323 161 ADFDR-AKGLNVMENILQAHPDIKGVFAQNDEMALGAIEALKAAGKDDVKVVGFDGT 216 (268)
T ss_pred CCCCH-HHHHHHHHHHHHHCCCcCEEEEcCCchHHHHHHHHHHcCCCCcEEEEeCCC
Confidence 11100 000111111 113589999999888877766666543224566666543
No 77
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=93.35 E-value=0.72 Score=40.48 Aligned_cols=183 Identities=10% Similarity=0.001 Sum_probs=88.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
..+.+.++++|+++..+.. . ..+.+...+.++ .....|.+|+.+.. .....++.+. . +++++.+|...
T Consensus 18 ~gi~~~~~~~g~~~~~~~~---~-~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~---~-~ipvV~~~~~~ 89 (271)
T cd06314 18 AGVKAAGKELGVDVEFVVP---Q-QGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKAA---A-GIKLITTDSDA 89 (271)
T ss_pred HHHHHHHHHcCCeEEEeCC---C-CCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHHHHHHHh---c-CCCEEEecCCC
Confidence 3445667788988775521 1 111111112221 13579999998643 2222333332 3 67888888543
Q ss_pred HHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeee
Q 023179 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~ 211 (286)
... . .+..+..-....+..+++.|.+....+.+++++.|... ..-+.+.+++.|..+.. .+.
T Consensus 90 ~~~--~-------~~~~V~~D~~~~g~~a~~~l~~~~~~g~~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~--~~~ 158 (271)
T cd06314 90 PDS--G-------RYVYIGTDNYAAGRTAGEIMKKALPGGGKVAIFVGSLGADNAKERIQGIKDAIKDSKIEIVD--TRG 158 (271)
T ss_pred Ccc--c-------eeEEEccChHHHHHHHHHHHHHHcCCCCEEEEEecCCCCCCHHHHHHHHHHHHhcCCcEEEE--Eec
Confidence 110 0 11111111122344555565553223456666666533 23467788888876543 111
Q ss_pred eecCCCCcHHHHHH----cCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCHHH
Q 023179 212 TEPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETT 264 (286)
Q Consensus 212 ~~~~~~~~~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~~T 264 (286)
............+. -..+++|++.+...+..++..+.+.+. .++.++.++...
T Consensus 159 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~~~~~al~~~g~~~di~vig~d~~~ 216 (271)
T cd06314 159 DEEDFAKAKSNAEDALNAHPDLKCMFGLYAYNGPAIAEAVKAAGKLGKVKIVGFDEDP 216 (271)
T ss_pred CccCHHHHHHHHHHHHHhCCCccEEEecCCccHHHHHHHHHHcCCCCceEEEEeCCCH
Confidence 11110111112222 135788887766666556666655432 246677776643
No 78
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=93.26 E-value=0.86 Score=40.93 Aligned_cols=191 Identities=10% Similarity=0.091 Sum_probs=98.1
Q ss_pred HHHHHHHHhCCCcEEEe-ceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 63 GKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
..+.+.++++|.++..+ +.. . +.+...+.++. ....|.||+++.. ++...++.+.+ .+++++.++..
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~-~----d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~---~~iPvV~v~~~ 90 (298)
T cd06302 19 EGAKEAAKELGVDAIYVGPTT-A----DAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKARE---AGIKVVTHDSD 90 (298)
T ss_pred HHHHHHHHHhCCeEEEECCCC-C----CHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHH---CCCeEEEEcCC
Confidence 34556677889887753 322 1 11222222322 2568999998653 22344444443 47788888753
Q ss_pred hHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCe-eEEEE
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFE-VVRLN 208 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~-V~~~~ 208 (286)
... ... .+.+ .... ...+..+++.|.+.....++++++.+... ..-+.+.|+++|.. +..+.
T Consensus 91 ~~~--~~~------~~~~-v~~D~~~~g~~a~~~l~~~~~~~~~I~~l~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~ 161 (298)
T cd06302 91 VQP--DNR------DYDI-EQADNKAIGETLMDSLAEQMGGKGEYAIFVGSLTATNQNAWIDAAKAYQKEKYYPMLELVD 161 (298)
T ss_pred CCC--Ccc------eeEE-eccCHHHHHHHHHHHHHHHcCCCCEEEEEeCCCCCcchHHHHHHHHHHHhhcCCCCeEEeC
Confidence 211 001 1111 1112 12345556666665322358988876443 24566788888732 22222
Q ss_pred eeeeecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCHH--HHHHHHH
Q 023179 209 TYTTEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET--TASAAKR 270 (286)
Q Consensus 209 vY~~~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~~--Ta~~l~~ 270 (286)
++..........+..+. + ..+++|++++-..+...++.+.+.+. .++.++.++.. +++.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~D~~A~g~~~al~~~g~~~dv~vvG~D~~~~~~~~~~~ 230 (298)
T cd06302 162 RQYGDDDADKSYQTAQELLKAYPDLKGIIGPTSVGIPGAARAVEEAGLKGKVAVTGLGLPNQMAPYVKS 230 (298)
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCceEEEECCCcchhHHHHHHHhcCCCCCEEEEEeCCCHHHHHHHhC
Confidence 32211111111111211 1 35789999888777777777776543 35678888653 3445554
No 79
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=93.25 E-value=2.5 Score=37.22 Aligned_cols=172 Identities=12% Similarity=0.053 Sum_probs=86.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
..+.+.++++|.++..++.. .+ .+..+..+.+ .....|.||++++..-....+.+.. ..+.+++.+|..... .
T Consensus 22 ~gi~~~~~~~gy~~~i~~~~--~~-~~~~~~i~~l-~~~~vdgiI~~~~~~~~~~~~~~~~--~~~~PiV~i~~~~~~-~ 94 (265)
T cd06354 22 EGLERAAKELGIEYKYVESK--SD-ADYEPNLEQL-ADAGYDLIVGVGFLLADALKEVAKQ--YPDQKFAIIDAVVDD-P 94 (265)
T ss_pred HHHHHHHHHcCCeEEEEecC--CH-HHHHHHHHHH-HhCCCCEEEEcCcchHHHHHHHHHH--CCCCEEEEEecccCC-C
Confidence 34556778899998886543 11 1112222223 2367999999875433333333332 236789999864311 0
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-----h-hHHHHHHHhCC---CeeEEEEeeeee
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-----S-NEIEEGLSNRG---FEVVRLNTYTTE 213 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-----~-~~L~~~L~~~G---~~V~~~~vY~~~ 213 (286)
. ++.....-.......+...+... ...+++.++.+... + .-+.+.+++.| ..+....++...
T Consensus 95 --~------~~~~v~~d~~~a~~~a~~ll~~~-~G~~~I~~i~~~~~~~~~~r~~gf~~~~~~~g~~~~~~~~~~~~~~~ 165 (265)
T cd06354 95 --P------NVASIVFKEEEGSFLAGYLAALM-TKTGKVGFIGGMDIPLIRRFEAGFEAGVKYVNPGVPDIEVLVQYAGS 165 (265)
T ss_pred --C------cEEEEEecchhHHHHHHHHHHhh-cCCCeEEEEecccChHHHHHHHHHHHHHHHHhccCCCceEEEEEcCc
Confidence 1 22221221112223333222221 13478999976432 2 34567777777 555443333322
Q ss_pred cC-CCCcHHHHHH-c-CCCCEEEEeChHHHHHHHHHhccc
Q 023179 214 PV-HHVDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 214 ~~-~~~~~~~~~~-~-~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
.. .....+..++ + ..+|+|++++-..+-..+..+++.
T Consensus 166 ~~~~~~~~~~~~~ll~~~pdaI~~~nd~~A~gv~~al~~~ 205 (265)
T cd06354 166 FNDPAKGKEIAQAMYDQGADVIFAAAGGTGNGVFQAAKEA 205 (265)
T ss_pred ccCHHHHHHHHHHHHHCCCcEEEECCCCCchHHHHHHHhc
Confidence 11 1111122222 2 347998888877776666666654
No 80
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=93.18 E-value=1.4 Score=38.39 Aligned_cols=178 Identities=8% Similarity=0.046 Sum_probs=93.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
..+.+.+++.|.+++.+. ....++. ..+.+.+ ....+|.||+++...-..... +.. .+.+++.+|.....
T Consensus 19 ~~i~~~~~~~g~~~~~~~---~~~~~~~~~~~i~~l-~~~~~dgiii~~~~~~~~~~~-~~~---~~iPvV~~~~~~~~- 89 (263)
T cd06280 19 RAVEDAAYRAGLRVILCN---TDEDPEKEAMYLELM-EEERVTGVIFAPTRATLRRLA-ELR---LSFPVVLIDRAGPA- 89 (263)
T ss_pred HHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHH-HhCCCCEEEEeCCCCCchHHH-HHh---cCCCEEEECCCCCC-
Confidence 455577788898886431 1211111 1122223 235689999988653322222 222 36789999876421
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeecC
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (286)
. .+..........+..+++.|.+. ..+++.++.|... ...+.+.+++.|..+....+ . ..
T Consensus 90 ---~------~~~~v~~d~~~~g~~a~~~L~~~--g~~~i~~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~--~-~~ 155 (263)
T cd06280 90 ---G------RVDAVVLDNRAAARTLVEHLVAQ--GYRRIGGLFGNASTTGAERRAGYEDAMRRHGLAPDARFV--A-PT 155 (263)
T ss_pred ---C------CCCEEEECcHHHHHHHHHHHHHC--CCceEEEEeCCCCCCHHHHHHHHHHHHHHcCCCCChhhc--c-cC
Confidence 1 22222222223345566666554 3368888866532 23456677777765432111 1 11
Q ss_pred CCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 216 HHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 216 ~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
.....+...+ + ..+++|+.++...+...+..+.+.+. .++.+++++..
T Consensus 156 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d~~ 210 (263)
T cd06280 156 AEAAEAALAAWLAAPERPEALVASNGLLLLGALRAVRAAGLRIPQDLALAGFDND 210 (263)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCcEEEEEeCCh
Confidence 1111112222 2 25899999999888877777766542 24556665553
No 81
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=93.06 E-value=2.2 Score=37.27 Aligned_cols=181 Identities=10% Similarity=0.071 Sum_probs=92.1
Q ss_pred HHHHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 64 KLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 64 ~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
.+.+.+.++ |+++..+... ..+....+.++..+ ....|.||+.+.. .....++.+.+ .+++++.+|.....
T Consensus 20 ~i~~~~~~~~g~~~~~~~~~-~~~~~~~~~i~~~~--~~~vdgiii~~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~~ 93 (270)
T cd06308 20 EIQREASNYPDVELIIADAA-DDNSKQVADIENFI--RQGVDLLIISPNEAAPLTPVVEEAYR---AGIPVILLDRKILS 93 (270)
T ss_pred HHHHHHHhcCCcEEEEEcCC-CCHHHHHHHHHHHH--HhCCCEEEEecCchhhchHHHHHHHH---CCCCEEEeCCCCCC
Confidence 344555665 7887654321 00000112232222 2578999998643 22333344433 47889999854211
Q ss_pred HHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhC-CCeeEEEEeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNTYT 211 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~-G~~V~~~~vY~ 211 (286)
. .....+.... ..+..+++.|.+.....++++++.+.... .-+.+.|+++ |.++.. .+.
T Consensus 94 ----~------~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~R~~g~~~~l~~~~~~~~~~--~~~ 161 (270)
T cd06308 94 ----D------KYTAYIGADNYEIGRQAGEYIANLLPGKGNILEIWGLEGSSPAIERHDGFKEALSKYPKIKIVA--QQD 161 (270)
T ss_pred ----c------cceEEeecCcHHHHHHHHHHHHHHcCCCceEEEEECCCCCchHHHHHHHHHHHHHHCCCCEEEE--ecC
Confidence 1 1111122222 23444555665542245799999764432 3345677777 765532 221
Q ss_pred eecCCCCcHH----HHHHcCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCH
Q 023179 212 TEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 262 (286)
Q Consensus 212 ~~~~~~~~~~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~ 262 (286)
.......... +++....+++|++.+-..+...+..+.+.+. .++.+++++.
T Consensus 162 ~~~~~~~~~~~~~~~l~~~~~~~aI~~~~d~~a~g~~~al~~~g~~~dv~vvg~d~ 217 (270)
T cd06308 162 GDWLKEKAEEKMEELLQANPDIDLVYAHNDPMALGAYLAAKRAGREKEIKFIGIDG 217 (270)
T ss_pred CCccHHHHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHHHHHcCCCCCcEEEEecC
Confidence 1111111111 2222245899999999988888888776542 3567777754
No 82
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=92.81 E-value=1.5 Score=37.82 Aligned_cols=181 Identities=12% Similarity=0.093 Sum_probs=91.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH--HHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av--~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++..++.-.. +......+...+ ...+|.||+.+.... ...++.+.. .++++++++.....
T Consensus 20 ~~~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~l~--~~~vdgvi~~~~~~~~~~~~~~~l~~---~~ip~V~~~~~~~~- 92 (267)
T cd01536 20 GAEAAAKELGVELIVLDAQND-VSKQIQQIEDLI--AQGVDGIIISPVDSAALTPALKKANA---AGIPVVTVDSDIDG- 92 (267)
T ss_pred HHHHHHHhcCceEEEECCCCC-HHHHHHHHHHHH--HcCCCEEEEeCCCchhHHHHHHHHHH---CCCcEEEecCCCCc-
Confidence 334556678887776554321 100011222223 237999998865432 224444443 36788888765422
Q ss_pred HHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCC-CeeEEEEeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVRLNTYTT 212 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G-~~V~~~~vY~~ 212 (286)
.. .+.. +.+. ...+..+++.|.+...+.+++.++.+... ...+.+.+++.| .++... +..
T Consensus 93 --~~------~~~~-v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~--~~~ 161 (267)
T cd01536 93 --GN------RLAY-VGTDNYEAGRLAGEYLAKLLGGKGKVAIIEGPPGSSNAQERVKGFRDALKEYPDIEIVAV--QDG 161 (267)
T ss_pred --cc------eeEE-EecCHHHHHHHHHHHHHHHhCCCceEEEEEcccccchHHHHHHHHHHHHHhCCCcEEEEE--ecC
Confidence 11 2221 1222 12344555666554223478888866532 345677888874 554322 211
Q ss_pred ecCCCCcHHHHHH----cCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCH
Q 023179 213 EPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 262 (286)
Q Consensus 213 ~~~~~~~~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~ 262 (286)
........+.+.. ...+++|++.+...+..++..+.+.+. .+..++..+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~~~~~~l~~~g~~~~i~ivg~d~ 216 (267)
T cd01536 162 NWDREKALQAMEDLLQANPDIDAIFAANDSMALGAVAALKAAGRKGDVKIVGVDG 216 (267)
T ss_pred CCcHHHHHHHHHHHHHhCCCccEEEEecCCchHHHHHHHHhcCCCCCceEEecCC
Confidence 1111111122222 134788888887777777777665432 2466666654
No 83
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=92.57 E-value=1.3 Score=38.27 Aligned_cols=178 Identities=11% Similarity=0.007 Sum_probs=91.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++...+. ...++ ..+..+.+. -..+|+||+.+.+.. ..+++.+.+ .++++++++....
T Consensus 20 ~i~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~-~~~vdgiii~~~~~~~~~~~~~~~~---~~ipvV~~~~~~~-- 90 (266)
T cd06282 20 GIQEEARAAGYSLLLATT---DYDAEREADAVETLL-RQRVDGLILTVADAATSPALDLLDA---ERVPYVLAYNDPQ-- 90 (266)
T ss_pred HHHHHHHHCCCEEEEeeC---CCCHHHHHHHHHHHH-hcCCCEEEEecCCCCchHHHHHHhh---CCCCEEEEeccCC--
Confidence 445667788988886543 11111 111222221 257999999765421 224444443 3677888765432
Q ss_pred HHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCCCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~~rvL~~~g~~~--------~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
. ++.. +.... ..+..+++.|.+. ..++++++.|... ..-+.+.|++.|.++.....+..
T Consensus 91 ---~------~~~~-v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~ 158 (266)
T cd06282 91 ---P------GRPS-VSVDNRAAARDVAQALAAL--GHRRIAMLAGRLAASDRARQRYAGYRAAMRAAGLAPLPPVEIPF 158 (266)
T ss_pred ---C------CCCE-EeeCcHHHHHHHHHHHHHc--CcccEEEeccccccCchHHHHHHHHHHHHHHcCCCCCccccCCC
Confidence 2 2221 12221 2344555666554 3468888865321 23445677788876533221111
Q ss_pred ecCCCCcHHHHHHc---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 213 EPVHHVDQTVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 213 ~~~~~~~~~~~~~~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
. .....+.+.+.+ ..+++|++++...+..++..+.+.+. .++.+++.+..
T Consensus 159 ~-~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~p~di~v~g~d~~ 214 (266)
T cd06282 159 N-TAALPSALLALLTAHPAPTAIFCSNDLLALAVIRALRRLGLRVPDDLSVVGFDGI 214 (266)
T ss_pred c-HHHHHHHHHHHhcCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeecch
Confidence 1 110111112112 35899999998877777777766532 24556666543
No 84
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=92.56 E-value=2 Score=37.21 Aligned_cols=143 Identities=19% Similarity=0.261 Sum_probs=98.8
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEE-----EEeCHHHHHHHHHHHHHcCC---CCcEEEEEC
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWI-----IITSPEAGSVFLEAWKEAGT---PNVRIGVVG 135 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~-~~~d~I-----vFTS~~av~~~~~~l~~~~~---~~~~i~aVG 135 (286)
-...|.++|++=+.+..+.+.|..+++.+....+.. ..|+-| +..|.+--+.+++.++..-. .+-.++-+|
T Consensus 65 aL~klk~~gy~eviiQ~lhiIpG~EyEklvr~V~~~~~dF~~lkig~PlLy~k~DYe~~v~aik~~~ppl~k~e~~vlmg 144 (265)
T COG4822 65 ALNKLKDQGYEEVIIQPLHIIPGIEYEKLVREVNKYSNDFKRLKIGRPLLYYKNDYEICVEAIKDQIPPLNKDEILVLMG 144 (265)
T ss_pred HHHHHHHccchheeeeeeeecCchHHHHHHHHHHHHhhhhheeecCCceeechhhHHHHHHHHHHhcCCcCcCeEEEEEe
Confidence 346788899998888888888887777666555332 344444 45677888888888877644 355677788
Q ss_pred hhhH-----------HHHHHhhhccCCCCceeccC---CCCCHHHHHHhcccCCCCC---CEEEEEcCCCChh-------
Q 023179 136 AGTA-----------SIFEEVIQSSKCSLDVAFSP---SKATGKILASELPKNGKKK---CTVLYPASAKASN------- 191 (286)
Q Consensus 136 ~~Ta-----------~~L~~~~~~~~~G~~~~~~~---~~~~~e~L~~~L~~~~~~~---~rvL~~~g~~~~~------- 191 (286)
++|. -.+.++ |+..+++. .-+..+.+++.|.+....+ -+++++.|+.+..
T Consensus 145 HGt~h~s~~~YacLd~~~~~~------~f~~v~v~~ve~yP~~d~vi~~l~~~~~~~v~L~PlMlvAG~Ha~nDMasdde 218 (265)
T COG4822 145 HGTDHHSNAAYACLDHVLDEY------GFDNVFVAAVEGYPLVDTVIEYLRKNGIKEVHLIPLMLVAGDHAKNDMASDDE 218 (265)
T ss_pred cCCCccHHHHHHHHHHHHHhc------CCCceEEEEecCCCcHHHHHHHHHHcCCceEEEeeeEEeechhhhhhhcccch
Confidence 8775 345666 87555543 2367889999998765422 2578889988754
Q ss_pred -HHHHHHHhCCCeeEEEEeeeeecCC
Q 023179 192 -EIEEGLSNRGFEVVRLNTYTTEPVH 216 (286)
Q Consensus 192 -~L~~~L~~~G~~V~~~~vY~~~~~~ 216 (286)
..++.|++.|+.| .+|..-.=+
T Consensus 219 dswk~il~~~G~~v---~~~l~GLGE 241 (265)
T COG4822 219 DSWKNILEKNGFKV---EVYLHGLGE 241 (265)
T ss_pred HHHHHHHHhCCcee---EEEeecCCC
Confidence 4569999999987 566654433
No 85
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability. FcuR acts as an inducer of fucRRIAK and as a corepressor of another locus that regulates production of fucosylated glycans. FcuR and its close homologs in this group are a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes t
Probab=92.52 E-value=1.6 Score=38.08 Aligned_cols=170 Identities=8% Similarity=0.010 Sum_probs=95.1
Q ss_pred HHHHHHHHhCC-CcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH-HHHHHHHcCCCCcEEEEEChhhHH
Q 023179 63 GKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 63 ~~l~~~L~~~G-~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~-~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
..+.+.++++| .+++..+.-+ ...+.+...+ ...+|.+|+.|...-.. ....+.+ .+.+++.+|.....
T Consensus 18 ~~i~~~l~~~g~~~l~~~~~~~----~~~~~~~~~~--~~~vdGvIi~~~~~~~~~~~~~~~~---~~~PvV~i~~~~~~ 88 (247)
T cd06276 18 NSFVNTLGKNAQVDLYFHHYNE----DLFKNIISNT--KGKYSGYVVMPHFKNEIQYFLLKKI---PKEKLLILDHSIPE 88 (247)
T ss_pred HHHHHHHHhcCcEEEEEEcCch----HHHHHHHHHH--hcCCCEEEEecCCCCcHHHHHHhcc---CCCCEEEEcCcCCC
Confidence 45667777889 7666544332 1112222223 36799999987642221 2222221 35789999975311
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhccc--CCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPK--NGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~--~~~~~~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
.. ++..+.......+..+++.|.+ . +.+++.++.+... ..-+.+.|++.|+.+... .
T Consensus 89 ---~~------~~~~V~~D~~~~~~~a~~~L~~~~~--G~~~Ia~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~-~--- 153 (247)
T cd06276 89 ---GG------EYSSVAQDFEKAIYNALQEGLEKLK--KYKKLILVFPNKTAIPKEIKRGFERFCKDYNIETEII-N--- 153 (247)
T ss_pred ---CC------CCCeEEEccHHHHHHHHHHHHHHhc--CCCEEEEEecCccHhHHHHHHHHHHHHHHcCCCcccc-c---
Confidence 11 2222222223345566677766 4 3479999977542 334567888888765421 1
Q ss_pred ecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 213 EPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
... . ......++|+++|-..+..++..+.+.+. .++.+++++..
T Consensus 154 ---~~~-~---~~~~~~~ai~~~~d~~A~g~~~~l~~~g~~iP~disvigfd~~ 200 (247)
T cd06276 154 ---DYE-N---REIEKGDLYIILSDTDLVFLIKKARESGLLLGKDIGIISYNDT 200 (247)
T ss_pred ---ccc-h---hhccCCcEEEEeCHHHHHHHHHHHHHcCCcCCceeEEEEecCc
Confidence 000 0 01234599999999999888887776542 24566666654
No 86
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=92.35 E-value=2.5 Score=36.79 Aligned_cols=180 Identities=10% Similarity=0.027 Sum_probs=91.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (286)
.+.+.++++|+++...+.-.. . .....+.+.+ .-..+|.||+.+...-.. ++.+.+ .+++++.++..- .
T Consensus 23 ~i~~~~~~~g~~~~~~~~~~~-~-~~~~~~~~~l-~~~~vdgiii~~~~~~~~-~~~l~~---~~ipvV~~~~~~----~ 91 (268)
T cd06277 23 AIEEEAKKYGYNLILKFVSDE-D-EEEFELPSFL-EDGKVDGIILLGGISTEY-IKEIKE---LGIPFVLVDHYI----P 91 (268)
T ss_pred HHHHHHHHcCCEEEEEeCCCC-h-HHHHHHHHHH-HHCCCCEEEEeCCCChHH-HHHHhh---cCCCEEEEccCC----C
Confidence 455667778887765543111 0 0011222223 135799999988654332 444443 367888887542 1
Q ss_pred HhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee-cC
Q 023179 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE-PV 215 (286)
Q Consensus 144 ~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~-~~ 215 (286)
.. ++..+..-....+..+++.|.+. ..++++++.+... ..-+.+.+++.|..+....++... ..
T Consensus 92 ~~------~~~~V~~d~~~~~~~a~~~l~~~--g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~ 163 (268)
T cd06277 92 NE------KADCVLTDNYSGAYAATEYLIEK--GHRKIGFVGDPLYSPSFEERYEGYKKALLDHGIPFNEDYDITEKEED 163 (268)
T ss_pred CC------CCCEEEecchHHHHHHHHHHHHC--CCCcEEEECCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEEcchhH
Confidence 12 32221221122334444555443 3478999876653 123567788888766443332211 00
Q ss_pred CCCcHHHHHHc-CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 216 HHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 216 ~~~~~~~~~~~-~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
.....++++.. ..+++|+..+...+..++..+.+.+. .++.+++++.
T Consensus 164 ~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~a~~~~g~~~p~di~vig~d~ 214 (268)
T cd06277 164 EEDIGKFIDELKPLPTAFFCSNDGVAFLLIKVLKEMGIRVPEDVSVIGFDD 214 (268)
T ss_pred HHHHHHHHhcCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCcceEEeecC
Confidence 00111222222 34899999888877766666555431 2345555543
No 87
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=92.33 E-value=2.3 Score=38.86 Aligned_cols=178 Identities=8% Similarity=0.012 Sum_probs=88.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcE-EEEEChhhHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVR-IGVVGAGTAS 140 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~-i~aVG~~Ta~ 140 (286)
.+.+.++++|..++..... .+.+...+.++. ...+|.||+.+...-...+..+.+ +.+ +++++....
T Consensus 80 gi~~~~~~~g~~~~~~~~~-----~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~----~~p~vV~i~~~~~- 149 (343)
T PRK10727 80 AVEQVAYHTGNFLLIGNGY-----HNEQKERQAIEQLIRHRCAALVVHAKMIPDAELASLMK----QIPGMVLINRILP- 149 (343)
T ss_pred HHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHh----cCCCEEEEecCCC-
Confidence 3445666788876543221 121111122211 357899999864211112233322 344 777875421
Q ss_pred HHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
.. ++.. +.... ..+...++.|.+. ..+++.++.+... ..-+.+.|+++|..+....++..
T Consensus 150 ---~~------~~~~-V~~Dn~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~ 217 (343)
T PRK10727 150 ---GF------ENRC-IALDDRYGAWLATRHLIQQ--GHTRIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFG 217 (343)
T ss_pred ---CC------CCCE-EEECcHHHHHHHHHHHHHC--CCccEEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhEEeC
Confidence 11 2221 12222 2233445556553 3478998876542 24567888899987654333322
Q ss_pred ecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
........+..++ + ..+++|++.+-..+-..+..+.+.+. .++.+++++..
T Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disVigfD~~ 275 (343)
T PRK10727 218 EPDESGGEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDV 275 (343)
T ss_pred CCChhHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceeEEeecCc
Confidence 1111111122222 2 35799999988877777776665432 24556666543
No 88
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=92.31 E-value=1.9 Score=34.28 Aligned_cols=98 Identities=20% Similarity=0.255 Sum_probs=65.7
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-----HHHHHHHHHHHcCCCCcEEEEECh
Q 023179 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~-----av~~~~~~l~~~~~~~~~i~aVG~ 136 (286)
..-+...|+.+|++|+.+..-... +.+-+.. ...+.|.|..+|-. ..+.+.+.+++.++...++++=|.
T Consensus 16 kniv~~~L~~~GfeVidLG~~v~~-----e~~v~aa-~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~ 89 (128)
T cd02072 16 NKILDHAFTEAGFNVVNLGVLSPQ-----EEFIDAA-IETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGN 89 (128)
T ss_pred HHHHHHHHHHCCCEEEECCCCCCH-----HHHHHHH-HHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECC
Confidence 356778899999999988765442 3333333 23578888876633 345567777787876677777554
Q ss_pred h---------hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc
Q 023179 137 G---------TASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (286)
Q Consensus 137 ~---------Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~ 172 (286)
- ....|++. |+...|.|.. +.+.+++.|.
T Consensus 90 ~~i~~~d~~~~~~~L~~~------Gv~~vf~pgt-~~~~i~~~l~ 127 (128)
T cd02072 90 LVVGKQDFEDVEKRFKEM------GFDRVFAPGT-PPEEAIADLK 127 (128)
T ss_pred CCCChhhhHHHHHHHHHc------CCCEEECcCC-CHHHHHHHHh
Confidence 2 23558988 9988777654 6777776664
No 89
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=92.31 E-value=2.1 Score=37.17 Aligned_cols=179 Identities=12% Similarity=0.098 Sum_probs=90.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
..+.+.++++|+++...+. ....+ .+.+...+ ....|+||+++.. .....++.+.+ .+++++.++...
T Consensus 19 ~~i~~~~~~~g~~~~i~~~---~~~~~~~~~~~~~~~--~~~vdgiii~~~~~~~~~~~~~~~~~---~~ipvV~~~~~~ 90 (267)
T cd06322 19 NAMKEEAKKQKVNLIVSIA---NQDLNKQLSDVEDFI--TKKVDAIVLSPVDSKGIRAAIAKAKK---AGIPVITVDIAA 90 (267)
T ss_pred HHHHHHHHhcCCEEEEecC---CCCHHHHHHHHHHHH--HcCCCEEEEcCCChhhhHHHHHHHHH---CCCCEEEEcccC
Confidence 4556667788988765432 11111 11222222 3579999998653 22334454444 367788887431
Q ss_pred HHHHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhC-CCeeEEEEee
Q 023179 139 ASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNR-GFEVVRLNTY 210 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~L~~~L~~~-G~~V~~~~vY 210 (286)
... +....+.... ..+...++.|.+.....+++.++.+... ..-+.+.+++. |.++... +
T Consensus 91 ----~~~------~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~--~ 158 (267)
T cd06322 91 ----EGV------AVVSHVATDNYAGGVLAGELAAKVLNGKGQVAIIDYPTVQSVVDRVRGFKEALADYPNIKIVAV--Q 158 (267)
T ss_pred ----CCC------ceEEEEecChHHHHHHHHHHHHHHhCCCceEEEEecCCCccHHHHHHHHHHHHHhCCCcEEEEe--c
Confidence 111 1111122222 1233345555554223368888865432 24456778777 7665322 1
Q ss_pred eeecCCCCcHH----HHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCH
Q 023179 211 TTEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE 262 (286)
Q Consensus 211 ~~~~~~~~~~~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~ 262 (286)
. ........+ +++...++++|+..+-..+...++.+.+.+..++.++.++.
T Consensus 159 ~-~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~di~vvg~d~ 213 (267)
T cd06322 159 P-GITRAEALTAAQNILQANPDLDGIFAFGDDAALGAVSAIKAAGRDNVKVIGFDG 213 (267)
T ss_pred C-CCChHHHHHHHHHHHHhCCCCCEEEEcCCcHHHHHHHHHHHCCCCCeEEEEecC
Confidence 1 111111111 12112358999999988887777777654433456666643
No 90
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=92.29 E-value=3.6 Score=36.03 Aligned_cols=184 Identities=11% Similarity=0.003 Sum_probs=90.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEEEeCHHHH--HHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~-~~~d~IvFTS~~av--~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
.+.+.++++|.....+........ +.+...+.++.+ ...|.||+.+...- ..+++.+.+ .+++++.++.....
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~vdgiii~~~~~~~~~~~i~~~~~---~~ipvV~~~~~~~~ 95 (275)
T cd06307 20 ALEAAAAAFPDARIRVRIHFVESF-DPAALAAALLRLGARSDGVALVAPDHPQVRAAVARLAA---AGVPVVTLVSDLPG 95 (275)
T ss_pred HHHHHHhhhhccCceEEEEEccCC-CHHHHHHHHHHHHhcCCEEEEeCCCcHHHHHHHHHHHH---CCCcEEEEeCCCCC
Confidence 344556667766655544332221 212222222211 17999999886532 334555554 36788888754311
Q ss_pred HHHHhhhccCCCCceeccCC-CCCHHHHHHhcccC-CCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPS-KATGKILASELPKN-GKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~-~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~ 211 (286)
. . .+.. +... ...+...++.|.+. ..++++++++.|... ..-+.+.|++.|..+....++.
T Consensus 96 ~---~------~~~~-V~~d~~~~g~~~~~~l~~~~g~~~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~~~~ 165 (275)
T cd06307 96 S---P------RAGY-VGIDNRAAGRTAAWLIGRFLGRRPGKVAVLAGSHRFRGHEEREMGFRSVLREEFPGLRVLETLE 165 (275)
T ss_pred C---c------eeeE-EccChHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCcchHHHHHHHHHHHHhhCCCcEEEeecc
Confidence 0 0 1111 1111 12233444555554 223468998877542 2345567777776554433322
Q ss_pred eecCCCCcHHHHHH----cCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCH
Q 023179 212 TEPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 262 (286)
Q Consensus 212 ~~~~~~~~~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~ 262 (286)
.........+..++ -..+++|++++... ..+++.+.+.+. .++.++.++.
T Consensus 166 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~-~g~~~al~~~g~~~di~Ivg~d~ 220 (275)
T cd06307 166 GLDDPARAYEATRKLLARHPDLVGIYNAGGGN-RGVIRALREAGRAGKVVFVGHEL 220 (275)
T ss_pred CCCChHHHHHHHHHHHHhCCCceEEEECCCCh-HHHHHHHHHcCCCCCcEEEEecC
Confidence 21111111122222 13688988888765 567777766542 2456666654
No 91
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=92.26 E-value=3 Score=36.35 Aligned_cols=145 Identities=9% Similarity=0.055 Sum_probs=77.2
Q ss_pred CCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCC
Q 023179 101 TIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKK 177 (286)
Q Consensus 101 ~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~ 177 (286)
...|.||+.+.. +..-.++.+.+ .+++++.+|.... .. ...+... ...++.+++.|.+....
T Consensus 56 ~~~dgiIi~~~~~~~~~~~i~~~~~---~~ipvv~~~~~~~----~~--------~~~V~~d~~~~g~~~~~~l~~~~~g 120 (271)
T cd06321 56 AKVDLILLNAVDSKGIAPAVKRAQA---AGIVVVAVDVAAE----GA--------DATVTTDNVQAGEISCQYLADRLGG 120 (271)
T ss_pred hCCCEEEEeCCChhHhHHHHHHHHH---CCCeEEEecCCCC----Cc--------cceeeechHHHHHHHHHHHHHHhCC
Confidence 568999997643 22333444433 3678999986421 11 1111111 22345556666654223
Q ss_pred CCEEEEEcCCCC------hhHHHHHHHhC-CCeeEEEEeeeeecCCCCcHHHHHH----cCCCCEEEEeChHHHHHHHHH
Q 023179 178 KCTVLYPASAKA------SNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNL 246 (286)
Q Consensus 178 ~~rvL~~~g~~~------~~~L~~~L~~~-G~~V~~~~vY~~~~~~~~~~~~~~~----~~~~d~IvftS~sav~~~~~~ 246 (286)
.+++.++.|... ..-+.+.+++. |.+.... .+..........+..++ -..+++|++.+-..+..++..
T Consensus 121 ~~~i~~i~g~~~~~~~~R~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 199 (271)
T cd06321 121 KGNVAILNGPPVSAVLDRVAGCKAALAKYPGIKLLSD-DQNGKGSRDGGLRVMQGLLTRFPKLDGVFAINDPTAIGADLA 199 (271)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHhCCCcEEEee-ecCCCCChhhHHHHHHHHHHhCCCCCEEEECCchhHHHHHHH
Confidence 468999987643 23344566665 4432211 11111111111112222 246899999998888878887
Q ss_pred hccccCCCceEEEeC
Q 023179 247 ISDTEQWSNSVACIG 261 (286)
Q Consensus 247 ~~~~~~~~~~iv~IG 261 (286)
+.+.+..++.+++++
T Consensus 200 l~~~g~~di~v~g~d 214 (271)
T cd06321 200 AKQAGRNDIKITSVD 214 (271)
T ss_pred HHHcCCCCcEEEEec
Confidence 776654467777774
No 92
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=92.19 E-value=1.3 Score=39.62 Aligned_cols=181 Identities=9% Similarity=0.071 Sum_probs=94.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEEChhh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
..+.+.++++|++++.+... .+.+...+.++. ...+|.||+++... ....++.+.+ .+++++.++...
T Consensus 46 ~~i~~~~~~~G~~~~~~~~~-----~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~ 117 (295)
T PRK10653 46 DGAQKEADKLGYNLVVLDSQ-----NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQ---ANIPVITLDRGA 117 (295)
T ss_pred HHHHHHHHHcCCeEEEecCC-----CCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHH---CCCCEEEEccCC
Confidence 34556678899888764321 121211222221 24689999876432 1223333333 467888888542
Q ss_pred HHHHHHhhhccCCCCceeccCCCC-CHHHHHHhcccCCCCCCEEEEEcCCC-------ChhHHHHHHHhCCCeeEEEEee
Q 023179 139 ASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAK-------ASNEIEEGLSNRGFEVVRLNTY 210 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~~~~~-~~e~L~~~L~~~~~~~~rvL~~~g~~-------~~~~L~~~L~~~G~~V~~~~vY 210 (286)
.. .. .+.. +.+... .++.+++.|.+....+.+++++.+.. ....+.+.+++.|.++.. .+
T Consensus 118 ~~---~~------~~~~-V~~D~~~~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~R~~gf~~al~~~g~~~~~--~~ 185 (295)
T PRK10653 118 TK---GE------VVSH-IASDNVAGGKMAGDFIAKKLGEGAKVIQLEGIAGTSAARERGEGFKQAVAAHKFNVLA--SQ 185 (295)
T ss_pred CC---Cc------eeeE-EccChHHHHHHHHHHHHHHhCCCceEEEEEccCCCccHHHHHHHHHHHHhhCCCEEEE--ec
Confidence 10 01 1111 222222 24556666765432224677665542 235577888888865532 22
Q ss_pred eeecCCCCcHH----HHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHH
Q 023179 211 TTEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 263 (286)
Q Consensus 211 ~~~~~~~~~~~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~ 263 (286)
..........+ +++....+++|++++-..+.-++..+.+.+..++.+++++..
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~l~al~~~G~~dv~vig~d~~ 242 (295)
T PRK10653 186 PADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGT 242 (295)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcCEEEECCChhHHHHHHHHHHcCCCceEEEEeCCC
Confidence 11100000111 121123588999999888887777777654446778887654
No 93
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=92.02 E-value=13 Score=36.71 Aligned_cols=201 Identities=20% Similarity=0.141 Sum_probs=107.3
Q ss_pred CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CCCCcEEEEEC-hh
Q 023179 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AG 137 (286)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~-~~~~~~i~aVG-~~ 137 (286)
.+-.++.+.|++.|+++..++.. ....++ |.++.+.+.-|..++.....+.+.+++. +.+-+...=+| ..
T Consensus 175 ~D~~EikrlL~~~Gi~vn~v~p~----g~s~~d----i~~l~~A~~nivl~~~~g~~~A~~Lee~fGiP~i~~~PiG~~~ 246 (519)
T PRK02910 175 DDLTELRRLLATLGIDVNVVAPL----GASPAD----LKRLPAAWFNVVLYREIGESAARYLEREFGQPYVKTVPIGVGA 246 (519)
T ss_pred hHHHHHHHHHHHcCCeEEEEeCC----CCCHHH----HHhcccCcEEEEeCHHHHHHHHHHHHHHhCCcccccccccHHH
Confidence 45589999999999999876521 112222 3356777888888887666677777643 44434445566 46
Q ss_pred hHHHHHHhhhccCCCCceec----cCC-CCCHHHH--HHhccc-CCCCCCEEEEEcCCCChhHHHHHHH-hCCCeeEEEE
Q 023179 138 TASIFEEVIQSSKCSLDVAF----SPS-KATGKIL--ASELPK-NGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLN 208 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~----~~~-~~~~e~L--~~~L~~-~~~~~~rvL~~~g~~~~~~L~~~L~-~~G~~V~~~~ 208 (286)
|.+.|++..+.- |..... ..+ ......+ ...+.. ....|+|+.+..+..-.-.+...|. +.|++|..+-
T Consensus 247 T~~fL~~la~~~--g~~~~~~e~~i~~~~~~~~~l~~~~~~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~ElGm~vv~~g 324 (519)
T PRK02910 247 TARFIREVAELL--NLDGADLEAFILDGLSAPSRLPWFSRSVDSTYLTGKRVFVFGDATHAVAAARILSDELGFEVVGAG 324 (519)
T ss_pred HHHHHHHHHHHh--CCChhhhHHHHHHHHhhhhhhhHHHHhhhhHhhcCCEEEEEcCcHHHHHHHHHHHHhcCCeEEEEe
Confidence 777777662211 432110 000 0000000 011111 1226789988887666667788887 7999998777
Q ss_pred eeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeEEe
Q 023179 209 TYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYY 278 (286)
Q Consensus 209 vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v~~ 278 (286)
+|.....+. .....+.. ..++++-.-...++..+... +..++.-+..-...++++|...+.+
T Consensus 325 t~~~~~~~~-~~~~~~~~-~~~~~i~~D~~el~~~i~~~------~PdliiG~~~er~~a~~lgiP~~~i 386 (519)
T PRK02910 325 TYLREDARW-VRAAAKEY-GDEALITDDYLEVEDAIAEA------APELVLGTQMERHSAKRLGIPCAVI 386 (519)
T ss_pred cCCcchhHH-HHHHHHhc-CCCeEEecCHHHHHHHHHhc------CCCEEEEcchHHHHHHHcCCCEEEe
Confidence 766543222 11122222 23444433333333333222 2334444445555667777765433
No 94
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=91.97 E-value=3.5 Score=33.07 Aligned_cols=109 Identities=19% Similarity=0.296 Sum_probs=70.0
Q ss_pred CeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH-----HHHHHHH
Q 023179 51 PKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFLEA 120 (286)
Q Consensus 51 ~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a-----v~~~~~~ 120 (286)
.+|++.....+ ..-+...|+++|++|+++..-... +++-+.. ...+.|.|..+|-.+ ...+.+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~-----e~~v~aa-~~~~adiVglS~l~~~~~~~~~~~~~~ 75 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQ-----EEFIKAA-IETKADAILVSSLYGHGEIDCKGLRQK 75 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCH-----HHHHHHH-HHcCCCEEEEecccccCHHHHHHHHHH
Confidence 45666555443 356678899999999998765442 3333333 235788888777443 4445677
Q ss_pred HHHcCCCCcEEEEEChh-------h---HHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 121 WKEAGTPNVRIGVVGAG-------T---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 121 l~~~~~~~~~i~aVG~~-------T---a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
+++.++...++ .+|-. . .+.|++. |+...|.|.. ..+.+++.|.+
T Consensus 76 l~~~gl~~~~v-ivGG~~vi~~~d~~~~~~~l~~~------Gv~~vF~pgt-~~~~iv~~l~~ 130 (134)
T TIGR01501 76 CDEAGLEGILL-YVGGNLVVGKQDFPDVEKRFKEM------GFDRVFAPGT-PPEVVIADLKK 130 (134)
T ss_pred HHHCCCCCCEE-EecCCcCcChhhhHHHHHHHHHc------CCCEEECcCC-CHHHHHHHHHH
Confidence 77777766664 44442 1 2358888 9988787654 66777777754
No 95
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=91.91 E-value=2.7 Score=35.50 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=84.0
Q ss_pred CCccEEEEeCHHHHHH-HHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCC
Q 023179 101 TIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKK 178 (286)
Q Consensus 101 ~~~d~IvFTS~~av~~-~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~ 178 (286)
..+|.|++........ ....+.+ .+++++.++....... .. .....+.+. ....+.+++.+.+.. .
T Consensus 57 ~~~d~ii~~~~~~~~~~~~~~~~~---~~ip~v~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~l~~~~--~ 124 (269)
T cd01391 57 QGVDGIIGPPSSSSALAVVELAAA---AGIPVVSLDATAPDLT-GY------PYVFRVGPDNEQAGEAAAEYLAEKG--W 124 (269)
T ss_pred cCCCEEEecCCCHHHHHHHHHHHH---cCCcEEEecCCCCccC-CC------ceEEEEcCCcHHHHHHHHHHHHHhC--C
Confidence 4789999887654332 3444443 3678888877654322 11 111122222 223555666666543 4
Q ss_pred CEEEEEcCCC-C-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--C-CCCEEEEeChHHHHHHHHHhcc
Q 023179 179 CTVLYPASAK-A-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--L-SIPVVAVASPSAVRSWVNLISD 249 (286)
Q Consensus 179 ~rvL~~~g~~-~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~-~~d~IvftS~sav~~~~~~~~~ 249 (286)
+++.++.+.. . ...+.+.+++.|.++.....+..... ...+...+.+ . ..++|++.+...+..++..+.+
T Consensus 125 ~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~~~~ 203 (269)
T cd01391 125 KRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLDTE-KGFQALLQLLKAAPKPDAIFACNDEMAAGALKAARE 203 (269)
T ss_pred ceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCCcc-ccHHHHHHHHhcCCCCCEEEEcCchHHHHHHHHHHH
Confidence 7888887665 2 34566777778755543333322111 1222233322 2 5899999998888888888776
Q ss_pred ccC--CCceEEEeCHH
Q 023179 250 TEQ--WSNSVACIGET 263 (286)
Q Consensus 250 ~~~--~~~~iv~IG~~ 263 (286)
.+. .+..+++++..
T Consensus 204 ~g~~~~~~~ii~~~~~ 219 (269)
T cd01391 204 AGLTPGDISIIGFDGS 219 (269)
T ss_pred cCCCCCCCEEEecccc
Confidence 543 35666666543
No 96
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=91.90 E-value=3.5 Score=37.18 Aligned_cols=173 Identities=11% Similarity=0.091 Sum_probs=80.7
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEECh---
Q 023179 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA--- 136 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~--- 136 (286)
..-+.+.|++.|+....+-........|.+.+.+.++. ..++|.|+-+...+...+.+.+. +.++++..|-
T Consensus 17 ~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa~~~~~~~~----~~iPVVf~~V~dp 92 (294)
T PF04392_consen 17 VRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAAQALAKHLK----DDIPVVFCGVSDP 92 (294)
T ss_dssp HHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHHHHHHHH-S----S-S-EEEECES-T
T ss_pred HHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHhcC----CCcEEEEEeccCh
Confidence 35677888899988722222222223344555555542 36899999888888877666542 2277766664
Q ss_pred hhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEE-cCCCC-----hhHHHHHHHhCCCeeEEEEee
Q 023179 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYP-ASAKA-----SNEIEEGLSNRGFEVVRLNTY 210 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~-~g~~~-----~~~L~~~L~~~G~~V~~~~vY 210 (286)
......... ..+ |-++.=+.+....+.-++.+.+....-+++.++ ..... .+.+.+..++.|+++..+.+-
T Consensus 93 ~~~~l~~~~-~~~--~~nvTGv~~~~~~~~~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~ 169 (294)
T PF04392_consen 93 VGAGLVDSL-DRP--GKNVTGVSERPPIEKQLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVP 169 (294)
T ss_dssp TTTTS-S-S-SS----SSEEEEEE---HHHHHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred hhhhccccc-cCC--CCCEEEEECCcCHHHHHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecC
Confidence 111111111 000 111111112334444446665555444677443 32222 346677778889888766553
Q ss_pred eeecCCCCcHHHHHHc-CCCCEEEEeChHHHHHHHH
Q 023179 211 TTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVN 245 (286)
Q Consensus 211 ~~~~~~~~~~~~~~~~-~~~d~IvftS~sav~~~~~ 245 (286)
.. ...+..++.+ ...|++++.....+..-..
T Consensus 170 ~~----~~~~~~~~~l~~~~da~~~~~~~~~~~~~~ 201 (294)
T PF04392_consen 170 SS----EDLEQALEALAEKVDALYLLPDNLVDSNFE 201 (294)
T ss_dssp SG----GGHHHHHHHHCTT-SEEEE-S-HHHHHTHH
T ss_pred cH----hHHHHHHHHhhccCCEEEEECCcchHhHHH
Confidence 21 2223334433 5789888887776654433
No 97
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=91.82 E-value=1.8 Score=34.86 Aligned_cols=98 Identities=16% Similarity=0.217 Sum_probs=57.8
Q ss_pred CEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEEEEeCh-----HHHHHHHHH
Q 023179 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASP-----SAVRSWVNL 246 (286)
Q Consensus 179 ~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~IvftS~-----sav~~~~~~ 246 (286)
.+|++.+-... ...+.-.|+..|++|..+-. .+ +.+++.+. ..++|+|.+++. ..++.+.+.
T Consensus 4 ~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~--~v----p~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~ 77 (137)
T PRK02261 4 KTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGV--MT----SQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREK 77 (137)
T ss_pred CEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCC--CC----CHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHH
Confidence 45655544433 33455678888887744332 12 12233332 257888777652 345556666
Q ss_pred hccccCCCceEEEeCHH---------HHHHHHHcCCCeEEeCCCC
Q 023179 247 ISDTEQWSNSVACIGET---------TASAAKRLGLKNVYYPTHP 282 (286)
Q Consensus 247 ~~~~~~~~~~iv~IG~~---------Ta~~l~~~G~~~v~~~~~p 282 (286)
+++....+.++++-|.- ..+.++++|+..++-|..+
T Consensus 78 L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~ 122 (137)
T PRK02261 78 CIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTD 122 (137)
T ss_pred HHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCC
Confidence 65543346777777754 2358999999988876654
No 98
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=91.82 E-value=2.3 Score=33.83 Aligned_cols=88 Identities=15% Similarity=0.269 Sum_probs=56.9
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEEEEeCh--H---HHHHHHHHhccccCCCceEEEeC
Q 023179 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASP--S---AVRSWVNLISDTEQWSNSVACIG 261 (286)
Q Consensus 189 ~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~IvftS~--s---av~~~~~~~~~~~~~~~~iv~IG 261 (286)
+...+...|+..|++|..+-+.. .+++..+. ..++|+|..+|- . ..+.+.+.+++.+..+.++++=|
T Consensus 15 Gkniv~~~L~~~GfeVidLG~~v------~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG 88 (128)
T cd02072 15 GNKILDHAFTEAGFNVVNLGVLS------PQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGG 88 (128)
T ss_pred HHHHHHHHHHHCCCEEEECCCCC------CHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEEC
Confidence 44567788999999886665522 23333332 258899888762 2 35556666665544457777766
Q ss_pred HH---------HHHHHHHcCCCeEEeCCCC
Q 023179 262 ET---------TASAAKRLGLKNVYYPTHP 282 (286)
Q Consensus 262 ~~---------Ta~~l~~~G~~~v~~~~~p 282 (286)
.- ..+.|+++|+..++-|..+
T Consensus 89 ~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~ 118 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGFDRVFAPGTP 118 (128)
T ss_pred CCCCChhhhHHHHHHHHHcCCCEEECcCCC
Confidence 52 3366999999998877654
No 99
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=91.73 E-value=1.1 Score=39.25 Aligned_cols=185 Identities=12% Similarity=0.082 Sum_probs=93.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEEChhh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
..+.+.++++|.++..+..-. .+.+...+.++. ....|.||+++... +...++.+.+ .++++++++...
T Consensus 20 ~g~~~~~~~~g~~v~~~~~~~----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~ 92 (271)
T cd06312 20 NGAEDAAKDLGVDVEYRGPET----FDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVA---AGIPVISFNAGD 92 (271)
T ss_pred HHHHHHHHHhCCEEEEECCCC----CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHH---CCCeEEEeCCCC
Confidence 345566677888876553321 021222222211 25799999987542 3334444443 367898887542
Q ss_pred HHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeee
Q 023179 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~ 211 (286)
.. .... ..+..+.......+..+++.|.+. ...++++++.|+.. ...+.+.++++|..+. .+.
T Consensus 93 ~~-~~~~-----~~~~~V~~d~~~~g~~~~~~l~~~-~g~~~i~~i~g~~~~~~~~~r~~g~~~~~~~~~~~~~---~~~ 162 (271)
T cd06312 93 PK-YKEL-----GALAYVGQDEYAAGEAAGERLAEL-KGGKNVLCVIHEPGNVTLEDRCAGFADGLGGAGITEE---VIE 162 (271)
T ss_pred Cc-cccc-----cceEEeccChHHHHHHHHHHHHHh-cCCCeEEEEecCCCCccHHHHHHHHHHHHHhcCceee---Eee
Confidence 11 0001 011111111122345556666652 23468888876432 2345566777765432 121
Q ss_pred eecCCCCcHHHHHH----cCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCHHH
Q 023179 212 TEPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETT 264 (286)
Q Consensus 212 ~~~~~~~~~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~~T 264 (286)
.........+..+. ..++++|+.++...+.-.+..+.+.+. .++.+++++..-
T Consensus 163 ~~~~~~~~~~~~~~~l~~~~~~~aI~~~~d~~a~g~~~al~~~g~~~di~vvg~d~~~ 220 (271)
T cd06312 163 TGADPTEVASRIAAYLRANPDVDAVLTLGAPSAAPAAKALKQAGLKGKVKLGGFDLSP 220 (271)
T ss_pred cCCCHHHHHHHHHHHHHhCCCccEEEEeCCccchHHHHHHHhcCCCCCeEEEEecCCH
Confidence 11111111112222 235899999998877777776665432 357788886433
No 100
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=91.46 E-value=7.5 Score=33.95 Aligned_cols=172 Identities=12% Similarity=0.005 Sum_probs=93.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
..+.+.++++|+.+..... . .+ . . . ....+|.||+.++..-. .++.+.+ .+++++.++.....
T Consensus 24 ~gi~~~~~~~g~~~~~~~~----~-~~-~--~--~-~~~~vdgii~~~~~~~~-~~~~~~~---~~~pvV~~~~~~~~-- 86 (270)
T cd01544 24 LGIEKRAQELGIELTKFFR----D-DD-L--L--E-ILEDVDGIIAIGKFSQE-QLAKLAK---LNPNLVFVDSNPAP-- 86 (270)
T ss_pred HHHHHHHHHcCCEEEEEec----c-ch-h--H--H-hccCcCEEEEecCCCHH-HHHHHHh---hCCCEEEECCCCCC--
Confidence 4556778888988876544 1 11 1 1 1 24678999987643322 2333333 36788888865421
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC------------hhHHHHHHHhCCCeeEEEEee
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------------SNEIEEGLSNRGFEVVRLNTY 210 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~------------~~~L~~~L~~~G~~V~~~~vY 210 (286)
. .+..+..-....+..+++.|.+. ..++++++.+... ...+.+.+.++|. .....++
T Consensus 87 --~------~~~~v~~D~~~a~~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~~~~~~~-~~~~~~~ 155 (270)
T cd01544 87 --D------GFDSVVPDFEQAVEKALDYLLEL--GHTRIGFIGGEEKTTDGHEYIEDPRETAFREYMKEKGL-YDPELIY 155 (270)
T ss_pred --C------CCCEEEECHHHHHHHHHHHHHHc--CCCcEEEECCCcccccccchhhhHHHHHHHHHHHHcCC-CChheEe
Confidence 1 22221221122345566666553 3468999977542 3345677888874 2222233
Q ss_pred eeecCCCCcHH----HHHHc--CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 211 TTEPVHHVDQT----VLKQA--LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 211 ~~~~~~~~~~~----~~~~~--~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
..........+ .++.. ..+++|++.+...+..++..+.+.+. .++.+++.+.
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~v~g~d~ 216 (270)
T cd01544 156 IGDFTVESGYQLMKEALKSLGDNLPTAFFIASDPMAIGALRALQEAGIKVPEDVSVISFND 216 (270)
T ss_pred eCCCCHHHHHHHHHHHHhccCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 32211111112 22222 24799999999988888887765432 2456666654
No 101
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=91.42 E-value=3.2 Score=37.94 Aligned_cols=180 Identities=11% Similarity=0.044 Sum_probs=88.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
.+.+.++++|+.+...... ..++. .+..+.+ .....|.||+++...-...+..+... ..+++.++....
T Consensus 80 gi~~~~~~~gy~~~~~~~~---~~~~~~~~~i~~l-~~~~vdGiIi~~~~~~~~~~~~~~~~---~p~vV~i~~~~~--- 149 (346)
T PRK10401 80 AVDLVAQQHQKYVLIGNSY---HEAEKERHAIEVL-IRQRCNALIVHSKALSDDELAQFMDQ---IPGMVLINRVVP--- 149 (346)
T ss_pred HHHHHHHHCCCEEEEEcCC---CChHHHHHHHHHH-HhcCCCEEEEeCCCCChHHHHHHHhc---CCCEEEEecccC---
Confidence 3455667789887643321 11111 1122222 13579999998642111112222221 123777775321
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecC
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (286)
.. ++..+..-....+....+.|.+. ..+++.|+.|... ..-+.+.|+++|..+....++.....
T Consensus 150 -~~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~ 220 (346)
T PRK10401 150 -GY------AHRCVCLDNVSGARMATRMLLNN--GHQRIGYLSSSHGIEDDAMRRAGWMSALKEQGIIPPESWIGTGTPD 220 (346)
T ss_pred -CC------CCCEEEECcHHHHHHHHHHHHHC--CCCeEEEEeCCCcCcchHHHHHHHHHHHHHcCCCCChhheecCCCC
Confidence 11 22221221112234445556543 3478988876442 23466888888876544333332211
Q ss_pred CCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 216 HHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 216 ~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
.....+..++ + ..+++|++.+-..+..++..+.+.+. .++.++.++.
T Consensus 221 ~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvigfD~ 274 (346)
T PRK10401 221 MQGGEAAMVELLGRNLQLTAVFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDD 274 (346)
T ss_pred hHHHHHHHHHHHcCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEeCC
Confidence 1111122222 2 35899999998888777777766431 2344555543
No 102
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.41 E-value=14 Score=35.36 Aligned_cols=216 Identities=12% Similarity=0.093 Sum_probs=104.6
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEece-------------EEeeeCC--CchHHHHHHhcCCCccEEEEeCHHHHH
Q 023179 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPL-------------IQHAQGP--DTDRLSSVLNADTIFDWIIITSPEAGS 115 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~-------------~~~~~~~--~~~~l~~~l~~~~~~d~IvFTS~~av~ 115 (286)
|+|+|.-...-+..+++.|.+.|.++..+-. ++..... +...+.+ . .+..+|.+++++++-..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~-~-~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLRE-A-GAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHH-c-CCCcCCEEEEecCChHH
Confidence 3556665544556666666666665543311 1111111 1122222 1 35689999998776333
Q ss_pred HH-HH-HHHHcCCCCcEEEEE--Chhh---HHHH--HHhhhccCCCCceeccCCCCCHHHHHHhcccCCC------CCC-
Q 023179 116 VF-LE-AWKEAGTPNVRIGVV--GAGT---ASIF--EEVIQSSKCSLDVAFSPSKATGKILASELPKNGK------KKC- 179 (286)
Q Consensus 116 ~~-~~-~l~~~~~~~~~i~aV--G~~T---a~~L--~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~------~~~- 179 (286)
.. .. ..+.. ....++++. .... .+.+ ++. |....+.|....+..|+..+..... .+.
T Consensus 79 n~~~~~~~r~~-~~~~~ii~~~~~~~~~~~~~l~~~~~~------G~~~vi~p~~~~a~~l~~~l~~~~~~~~~~~~~~~ 151 (453)
T PRK09496 79 NMVACQIAKSL-FGAPTTIARVRNPEYAEYDKLFSKEAL------GIDLLISPELLVAREIARLIEYPGALDVEEFADGR 151 (453)
T ss_pred HHHHHHHHHHh-cCCCeEEEEECCccccchhhhhhhhcC------CccEEECHHHHHHHHHHHHhcCCCceEeeeecCCe
Confidence 32 22 22222 134445443 2222 2233 556 8877676766666777665533210 111
Q ss_pred -EEE--EEcCC--CChhHHHHHH---HhCCCeeEEEEeeeeec--CCCCcHHHHHHcCCCCE-EEEeChHHHHHHHHHhc
Q 023179 180 -TVL--YPASA--KASNEIEEGL---SNRGFEVVRLNTYTTEP--VHHVDQTVLKQALSIPV-VAVASPSAVRSWVNLIS 248 (286)
Q Consensus 180 -rvL--~~~g~--~~~~~L~~~L---~~~G~~V~~~~vY~~~~--~~~~~~~~~~~~~~~d~-IvftS~sav~~~~~~~~ 248 (286)
.+. .+..+ .....+.+.- ...|+.|.. +++... .+. ... .+..-|. ++...+..++.|...+.
T Consensus 152 ~~i~e~~V~~~s~~~g~~l~~l~~~~~~~~~~vi~--i~r~~~~~~p~-~~~---~l~~gD~l~v~g~~~~l~~~~~~~~ 225 (453)
T PRK09496 152 VQLVEVKVYEGSPLVGKPLSDLREHFPDIDVRVVA--IFRGGRLIIPR-GDT---VIEAGDEVYFIGAREHIRAVMSEFG 225 (453)
T ss_pred EEEEEEEeCCCCccCCcCHHHhhhhcCCCceEEEE--EEECCEEEcCC-CCc---EecCCCEEEEEeCHHHHHHHHHHhC
Confidence 111 11111 1122233222 234555543 343221 111 111 1334444 45577888888888776
Q ss_pred cccCCCceEEEeC-----HHHHHHHHHcCCCeEEeCCC
Q 023179 249 DTEQWSNSVACIG-----ETTASAAKRLGLKNVYYPTH 281 (286)
Q Consensus 249 ~~~~~~~~iv~IG-----~~Ta~~l~~~G~~~v~~~~~ 281 (286)
.......+++.+| ...++.|.+.|...+++-.+
T Consensus 226 ~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~ 263 (453)
T PRK09496 226 RLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERD 263 (453)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5432245566665 77888888888877665443
No 103
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=91.36 E-value=1.7 Score=32.85 Aligned_cols=82 Identities=13% Similarity=0.230 Sum_probs=56.6
Q ss_pred CCHHHHHHhcccCCCCCCEEEEEcCCCC--hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHH
Q 023179 162 ATGKILASELPKNGKKKCTVLYPASAKA--SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 162 ~~~e~L~~~L~~~~~~~~rvL~~~g~~~--~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sa 239 (286)
+.+.+.++.|.+ .|+++.++..+.. +..+.+.|+..|+.+ + .++ ++||..+
T Consensus 17 pga~e~l~~L~~---~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~-----------~--~~~-----------i~ts~~~ 69 (101)
T PF13344_consen 17 PGAVEALDALRE---RGKPVVFLTNNSSRSREEYAKKLKKLGIPV-----------D--EDE-----------IITSGMA 69 (101)
T ss_dssp TTHHHHHHHHHH---TTSEEEEEES-SSS-HHHHHHHHHHTTTT---------------GGG-----------EEEHHHH
T ss_pred cCHHHHHHHHHH---cCCCEEEEeCCCCCCHHHHHHHHHhcCcCC-----------C--cCE-----------EEChHHH
Confidence 345566677766 4589999977754 468999999999864 1 111 7899999
Q ss_pred HHHHHHHhccccCCCceEEEeC-HHHHHHHHHcCCC
Q 023179 240 VRSWVNLISDTEQWSNSVACIG-ETTASAAKRLGLK 274 (286)
Q Consensus 240 v~~~~~~~~~~~~~~~~iv~IG-~~Ta~~l~~~G~~ 274 (286)
+..++..... ..+++++| +...+.+++.|++
T Consensus 70 ~~~~l~~~~~----~~~v~vlG~~~l~~~l~~~G~e 101 (101)
T PF13344_consen 70 AAEYLKEHKG----GKKVYVLGSDGLREELREAGFE 101 (101)
T ss_dssp HHHHHHHHTT----SSEEEEES-HHHHHHHHHTTEE
T ss_pred HHHHHHhcCC----CCEEEEEcCHHHHHHHHHcCCC
Confidence 9988887422 46677665 5667777888863
No 104
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=91.35 E-value=12 Score=35.14 Aligned_cols=141 Identities=16% Similarity=0.093 Sum_probs=81.4
Q ss_pred chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CCCCcEEEEEC-hhh
Q 023179 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AGT 138 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~-~~~~~~i~aVG-~~T 138 (286)
+..++.+.|++.|+++..++.... ..++ ++.+.+.+..+..++..-..+.+.+++. +.+-....-+| ..|
T Consensus 167 d~~el~~ll~~~G~~v~~~~~~~~----s~~~----i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~p~~~~~p~G~~~t 238 (399)
T cd00316 167 DLRELKRLLEEMGIRVNALFDGGT----TVEE----LRELGNAKLNLVLCRESGLYLARYLEEKYGIPYILINPIGLEAT 238 (399)
T ss_pred hHHHHHHHHHHcCCcEEEEcCCCC----CHHH----HHhhccCcEEEEecHhHHHHHHHHHHHHhCCCeEEeCCcCHHHH
Confidence 558999999999999998876622 1222 3356677888888885555566767654 33333223456 356
Q ss_pred HHHHHHhhhccCCCCceeccCCC--CCHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeee
Q 023179 139 ASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~~~~--~~~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
.+.|++..+.- |... -++.. .--+.+.+.+... ...|+++++..+....-.+...|.+.|.+|..+..+..
T Consensus 239 ~~~l~~i~~~~--g~~~-~~~~~i~~~~~~~~~~~~~~~~~l~g~~~~i~~~~~~~~~~~~~l~e~G~~v~~~~~~~~ 313 (399)
T cd00316 239 DAFLRKLAELF--GIEK-EVPEVIARERARLLDALADYHEYLGGKKVAIFGDGDLLLALARFLLELGMEVVAAGTTFG 313 (399)
T ss_pred HHHHHHHHHHh--CCCc-chHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCCC
Confidence 66666652111 3200 01100 0001112222221 12678998877665556678899999998877665443
No 105
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=91.25 E-value=1.2 Score=35.68 Aligned_cols=90 Identities=18% Similarity=0.258 Sum_probs=56.2
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChH-----HHHHHHHHhccccCCCceEEEeC--
Q 023179 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-----AVRSWVNLISDTEQWSNSVACIG-- 261 (286)
Q Consensus 189 ~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~s-----av~~~~~~~~~~~~~~~~iv~IG-- 261 (286)
+...+...|+..|++|.....+.+. +...+... ..+.|+|+..|-. .++.+.+.+++.+..+.++++=|
T Consensus 18 g~~iv~~~l~~~GfeVi~lg~~~s~--e~~v~aa~--e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~ 93 (132)
T TIGR00640 18 GAKVIATAYADLGFDVDVGPLFQTP--EEIARQAV--EADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVI 93 (132)
T ss_pred HHHHHHHHHHhCCcEEEECCCCCCH--HHHHHHHH--HcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 4566778899999998777776332 11111122 2589999998855 34444555544332245555543
Q ss_pred -HHHHHHHHHcCCCeEEeCCCC
Q 023179 262 -ETTASAAKRLGLKNVYYPTHP 282 (286)
Q Consensus 262 -~~Ta~~l~~~G~~~v~~~~~p 282 (286)
+.-.+.++++|+..++-|..+
T Consensus 94 ~~~~~~~l~~~Gvd~~~~~gt~ 115 (132)
T TIGR00640 94 PPQDFDELKEMGVAEIFGPGTP 115 (132)
T ss_pred ChHhHHHHHHCCCCEEECCCCC
Confidence 445677899999988877653
No 106
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=90.94 E-value=4.2 Score=33.94 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=71.1
Q ss_pred CCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEE
Q 023179 127 PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (286)
Q Consensus 127 ~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~ 206 (286)
.+..++.-...|++.|++++ ++.+..+ ..+..+++++|.+....+.++.++.....-..+...-.-.|.
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-----~iPVV~I--~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~---- 101 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-----SIPVVEI--PISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGV---- 101 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC------SS-EEEE-----HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-----
T ss_pred cCCeEEEECCHHHHHHHHhC-----CCCEEEE--CCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCC----
Confidence 46777777777999999996 7776555 467888888887766556677776654432222111111122
Q ss_pred EEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeEEe
Q 023179 207 LNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYY 278 (286)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v~~ 278 (286)
++....|.++..++..+..+... +..+++=|..+.+.++++|++.+.+
T Consensus 102 ---------------------~i~~~~~~~~~e~~~~i~~~~~~---G~~viVGg~~~~~~A~~~gl~~v~i 149 (176)
T PF06506_consen 102 ---------------------DIKIYPYDSEEEIEAAIKQAKAE---GVDVIVGGGVVCRLARKLGLPGVLI 149 (176)
T ss_dssp ---------------------EEEEEEESSHHHHHHHHHHHHHT---T--EEEESHHHHHHHHHTTSEEEES
T ss_pred ---------------------ceEEEEECCHHHHHHHHHHHHHc---CCcEEECCHHHHHHHHHcCCcEEEE
Confidence 44455556666666666666543 5778888888888888899887654
No 107
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=90.92 E-value=3 Score=36.34 Aligned_cols=181 Identities=15% Similarity=0.138 Sum_probs=89.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
.+.+.++++|+++..++. . .+.+...+.++. -...|+||+..... ....++.+.+ .+++++.++....
T Consensus 21 g~~~~~~~~g~~~~~~~~---~--~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~---~~iPvV~~~~~~~ 92 (275)
T cd06317 21 AFQAAAEEDGVEVIVLDA---N--GDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQ---AGIPVVITNSNIS 92 (275)
T ss_pred HHHHHHHhcCCEEEEEcC---C--cCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHH---CCCcEEEeCCCCC
Confidence 444556678988765432 1 121222222211 24689998876432 2233444443 4678888875421
Q ss_pred HHHHHhhhccCCCCce--ecc-CCC-CCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEE
Q 023179 140 SIFEEVIQSSKCSLDV--AFS-PSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLN 208 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~--~~~-~~~-~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~~~~ 208 (286)
.. +... .++ ... ..+..+++.+.+.....++++++.+.... ..+.+.++++|..+....
T Consensus 93 ----~~------~~~~v~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~ 162 (275)
T cd06317 93 ----EK------GFEFIKSFTGPDDISQGERSAEAMCKALGGKGQIVVIAGQPGNGTAIERQKGFEDELAEVCPGVEVLD 162 (275)
T ss_pred ----CC------ccchhhhhccccHHHHHHHHHHHHHHHcCCCceEEEEecCCCCchHHHHHHHHHHHHHhhCCCCEEEe
Confidence 11 1110 011 111 12344555555543233689988664321 335577778875554443
Q ss_pred eeeeecCCCCcH----HHHHHc-CCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCH
Q 023179 209 TYTTEPVHHVDQ----TVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 262 (286)
Q Consensus 209 vY~~~~~~~~~~----~~~~~~-~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~ 262 (286)
.+.......... .+++.. ..+++|++.+-..+..++..+.+.+. .++.++.++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~~dv~v~g~d~ 222 (275)
T cd06317 163 TQPADWDREKAQVAMEALITKFGDDIDGVYAGDDNMARGALNAAKEAGLAGGIVIVGANN 222 (275)
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCccEEEECCCcHHHHHHHHHHhcCCcCCcEEEEeCC
Confidence 332111111111 122222 34799998887777777777765542 2566666643
No 108
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=90.82 E-value=3.2 Score=37.53 Aligned_cols=178 Identities=11% Similarity=0.084 Sum_probs=89.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeCHHH-HHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~~~~~d~IvFTS~~a-v~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+.+..+... ..++. ....+.+ .....|.||+.+... ....+..+.+ .+++++.++....
T Consensus 81 ~i~~~~~~~gy~~~i~~~~---~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 151 (327)
T TIGR02417 81 ELEQQCREAGYQLLIACSD---DNPDQEKVVIENL-LARQVDALIVASCMPPEDAYYQKLQN---EGLPVVALDRSLD-- 151 (327)
T ss_pred HHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHH-HHcCCCEEEEeCCCCCChHHHHHHHh---cCCCEEEEccccC--
Confidence 4555667789988765431 11111 1122222 135789999876432 2233344433 3678888986431
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
.. ++..+.......+..+++.|.+. ..+++.|+.+... ..-+.+.|+++|..+. .++....
T Consensus 152 --~~------~~~~V~~dn~~~~~~~~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~--~~~~~~~ 219 (327)
T TIGR02417 152 --DE------HFCSVISDDVDAAAELIERLLSQ--HADEFWYLGAQPELSVSRDRLAGFRQALKQATLEVE--WVYGGNY 219 (327)
T ss_pred --CC------CCCEEEeCcHHHHHHHHHHHHHC--CCCeEEEEeCcccchhHHHHHHHHHHHHHHcCCChH--hEEeCCC
Confidence 11 22222221122244555666554 3478999987543 2345677888886532 1222111
Q ss_pred CCCCcHHHHHH-c---C-CCCEEEEeChHHHHHHHHHhcccc--CCCceEEEeCH
Q 023179 215 VHHVDQTVLKQ-A---L-SIPVVAVASPSAVRSWVNLISDTE--QWSNSVACIGE 262 (286)
Q Consensus 215 ~~~~~~~~~~~-~---~-~~d~IvftS~sav~~~~~~~~~~~--~~~~~iv~IG~ 262 (286)
......+...+ + . .+++|++.+-..+..++..+.+.+ ..++.+++++.
T Consensus 220 ~~~~~~~~~~~ll~~~~~~~~Ai~~~~D~~A~g~~~al~~~g~vP~dvsvigfd~ 274 (327)
T TIGR02417 220 SRESGYQMFAKLCARLGRLPQALFTTSYTLLEGVLDYMLERPLLDSQLHLATFGD 274 (327)
T ss_pred ChHHHHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEECC
Confidence 11111122222 1 2 479999988666655555554432 11455666553
No 109
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=90.53 E-value=2.8 Score=36.36 Aligned_cols=175 Identities=13% Similarity=0.091 Sum_probs=90.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
..+.+.++++|.++...+.- ...+ ..++.+.+ .....|.||+++.... .+.+. ..++++++++....
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~-~~~~~dgiii~~~~~~---~~~~~---~~gipvv~~~~~~~-- 86 (265)
T cd06291 19 RAVEKELYKKGYKLILCNSD---NDPEKEREYLEML-RQNQVDGIIAGTHNLG---IEEYE---NIDLPIVSFDRYLS-- 86 (265)
T ss_pred HHHHHHHHHCCCeEEEecCC---ccHHHHHHHHHHH-HHcCCCEEEEecCCcC---HHHHh---cCCCCEEEEeCCCC--
Confidence 34556777889887754321 1111 11111222 1357899999876432 12222 23678999986532
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~--------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
. ++..+..-....+..+++.|.+. ..++++++.+... ..-+.+.|+++|..+..+.+ ..
T Consensus 87 ---~------~~~~V~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~-~~- 153 (265)
T cd06291 87 ---E------NIPIVSSDNYEGGRLAAEELIER--GCKHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRIIEI-QE- 153 (265)
T ss_pred ---C------CCCeEeechHHHHHHHHHHHHHc--CCcEEEEEccCcccccchHHHHHHHHHHHHHcCCCCChhee-ec-
Confidence 1 22211111122345566666654 3468988876554 13466788888876543221 11
Q ss_pred cCCCC-cHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 214 PVHHV-DQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 214 ~~~~~-~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
..... ..+.... + ..+++|++.+-..+..++..+.+.+. .++.+++++.
T Consensus 154 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~vp~di~v~g~d~ 210 (265)
T cd06291 154 NFDDAEKKEEIKELLEEYPDIDGIFASNDLTAILVLKEAQQRGIRVPEDLQIIGYDG 210 (265)
T ss_pred cccchHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCcceEEeccCC
Confidence 11111 1122222 2 35788888777777667666665432 2355555554
No 110
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=90.43 E-value=4.8 Score=35.51 Aligned_cols=163 Identities=13% Similarity=0.102 Sum_probs=89.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
..+.+.++++|+.++.++... + . ..+ .....|.||+++...-...++.+.+ .+++++.+|.....
T Consensus 27 ~~i~~~~~~~gy~~~~~~~~~-----~-~---~~l-~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~~~-- 91 (269)
T cd06287 27 AAAAESALERGLALCLVPPHE-----A-D---SPL-DALDIDGAILVEPMADDPQVARLRQ---RGIPVVSIGRPPGD-- 91 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCC-----c-h---hhh-hccCcCeEEEecCCCCCHHHHHHHH---cCCCEEEeCCCCCC--
Confidence 456677888999888765431 1 1 123 2357999999875432223333433 36789999864310
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecC
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (286)
.. ++..+..-....+..+++.|.+. ..++++|+.+... ..-+.+.++++|.++..+.+ ....
T Consensus 92 -~~------~~~~V~~d~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~--~~~~ 160 (269)
T cd06287 92 -RT------DVPYVDLQSAATARMLLEHLRAQ--GARQIALIVGSARRNSYLEAEAAYRAFAAEHGMPPVVLRV--DEAG 160 (269)
T ss_pred -CC------CCCeEeeCcHHHHHHHHHHHHHc--CCCcEEEEeCCcccccHHHHHHHHHHHHHHcCCCcceeEe--cCCC
Confidence 11 33322222223345555666554 2368989876432 23456778888876542111 1111
Q ss_pred CC-CcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhcccc
Q 023179 216 HH-VDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTE 251 (286)
Q Consensus 216 ~~-~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~ 251 (286)
.. ...+..++ + ..+++|+++|-..+...+..+.+.+
T Consensus 161 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~gvl~al~~~g 201 (269)
T cd06287 161 GEEAGYAACAQLLAQHPDLDALCVPVDAFAVGAVRAATELG 201 (269)
T ss_pred ChHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcC
Confidence 11 11112222 1 3579999999888877777776543
No 111
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=90.35 E-value=5 Score=30.88 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~-----~av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
.-+...|+..|++|+++... . + .+.+.+.+ ...++|.|.+++. ..+..+.+.+++.+.++++|++-|..
T Consensus 17 ~~~~~~l~~~G~~V~~lg~~--~--~-~~~l~~~~-~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~ 90 (119)
T cd02067 17 NIVARALRDAGFEVIDLGVD--V--P-PEEIVEAA-KEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAI 90 (119)
T ss_pred HHHHHHHHHCCCEEEECCCC--C--C-HHHHHHHH-HHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCC
Confidence 46778888999999776622 1 1 24555555 3467899988875 23344556666654447888888877
Q ss_pred hHH---HHHHhhhccCCCCceec
Q 023179 138 TAS---IFEEVIQSSKCSLDVAF 157 (286)
Q Consensus 138 Ta~---~L~~~~~~~~~G~~~~~ 157 (286)
... .+++. |+...+
T Consensus 91 ~~~~~~~~~~~------G~D~~~ 107 (119)
T cd02067 91 VTRDFKFLKEI------GVDAYF 107 (119)
T ss_pred CChhHHHHHHc------CCeEEE
Confidence 665 56666 876544
No 112
>PRK09526 lacI lac repressor; Reviewed
Probab=90.30 E-value=5.2 Score=36.33 Aligned_cols=168 Identities=8% Similarity=-0.019 Sum_probs=83.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (286)
.+.+.++++|+++..+..-.... .......+.+ ....+|.||+.++..-... ..+.. ...+++++.++...
T Consensus 84 gi~~~a~~~g~~~~i~~~~~~~~-~~~~~~l~~l-~~~~vdGiii~~~~~~~~~-~~~~~-~~~~iPvV~~d~~~----- 154 (342)
T PRK09526 84 AIKSRADQLGYSVVISMVERSGV-EACQAAVNEL-LAQRVSGVIINVPLEDADA-EKIVA-DCADVPCLFLDVSP----- 154 (342)
T ss_pred HHHHHHHHCCCEEEEEeCCCChH-HHHHHHHHHH-HhcCCCEEEEecCCCcchH-HHHHh-hcCCCCEEEEeccC-----
Confidence 44466678898887643211000 0011122223 1367999999644322212 11211 12367888887521
Q ss_pred HhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecCC
Q 023179 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (286)
Q Consensus 144 ~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~~ 216 (286)
.. .+..+..-....+..+++.|.+. ..++++++.|... ..-+.+.|++.|+.+.. ++......
T Consensus 155 ~~------~~~~V~~d~~~~~~~a~~~L~~~--G~~~I~~l~g~~~~~~~~~R~~Gf~~al~~~gi~~~~--~~~~~~~~ 224 (342)
T PRK09526 155 QS------PVNSVSFDPEDGTRLGVEHLVEL--GHQRIALLAGPESSVSARLRLAGWLEYLTDYQLQPIA--VREGDWSA 224 (342)
T ss_pred CC------CCCEEEECcHHHHHHHHHHHHHC--CCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCcce--EEeCCCch
Confidence 12 22211111122345566677664 3479999977543 23467788888875422 22111111
Q ss_pred CCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccc
Q 023179 217 HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 217 ~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
....+.... + ..+++|++++-..+..++..+.+.
T Consensus 225 ~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~ 262 (342)
T PRK09526 225 MSGYQQTLQMLREGPVPSAILVANDQMALGVLRALHES 262 (342)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHHHc
Confidence 111111222 2 358999999988887777766654
No 113
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=89.88 E-value=5 Score=32.19 Aligned_cols=88 Identities=17% Similarity=0.283 Sum_probs=54.1
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEEEEeChH-----HHHHHHHHhccccCCCceEEEeC
Q 023179 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPS-----AVRSWVNLISDTEQWSNSVACIG 261 (286)
Q Consensus 189 ~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~IvftS~s-----av~~~~~~~~~~~~~~~~iv~IG 261 (286)
+...+...|+..|++|..+-+.. .+++..+. ..++|+|..+|-. ..+.+.+.+++.+..+.++++=|
T Consensus 17 Gk~iv~~~l~~~GfeVi~LG~~v------~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG 90 (134)
T TIGR01501 17 GNKILDHAFTNAGFNVVNLGVLS------PQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGG 90 (134)
T ss_pred hHHHHHHHHHHCCCEEEECCCCC------CHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecC
Confidence 34566788999999886655422 23344433 2588888887633 34555556655444345555555
Q ss_pred H------H---HHHHHHHcCCCeEEeCCCC
Q 023179 262 E------T---TASAAKRLGLKNVYYPTHP 282 (286)
Q Consensus 262 ~------~---Ta~~l~~~G~~~v~~~~~p 282 (286)
. . ..+.++++|+..++-|..+
T Consensus 91 ~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~ 120 (134)
T TIGR01501 91 NLVVGKQDFPDVEKRFKEMGFDRVFAPGTP 120 (134)
T ss_pred CcCcChhhhHHHHHHHHHcCCCEEECcCCC
Confidence 2 1 1346999999998877664
No 114
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=89.76 E-value=1.4 Score=39.21 Aligned_cols=182 Identities=12% Similarity=0.061 Sum_probs=94.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
..+.+.++++|+++..+....- +....+.+...+ ...+|.||+++.. .+...++.+.+ .++++++++.....
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~i~~~~--~~~vdgiii~~~~~~~~~~~l~~l~~---~~ipvV~~~~~~~~ 92 (288)
T cd01538 19 PNFEAALKELGAEVIVQNANGD-PAKQISQIENMI--AKGVDVLVIAPVDGEALASAVEKAAD---AGIPVIAYDRLILN 92 (288)
T ss_pred HHHHHHHHHcCCEEEEECCCCC-HHHHHHHHHHHH--HcCCCEEEEecCChhhHHHHHHHHHH---CCCCEEEECCCCCC
Confidence 3555667789999887554210 000011222222 3579999998643 33344444443 46788888865311
Q ss_pred HHHHhhhccCCCCceeccCC-CCCHHHHHHhcccC----CCCCCEEEEEcCCCC-------hhHHHHHHHhCC----Cee
Q 023179 141 IFEEVIQSSKCSLDVAFSPS-KATGKILASELPKN----GKKKCTVLYPASAKA-------SNEIEEGLSNRG----FEV 204 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~----~~~~~rvL~~~g~~~-------~~~L~~~L~~~G----~~V 204 (286)
. .....+... ...+..+++.|.+. ....++++++.|... ..-+.+.|++.| +++
T Consensus 93 ----~------~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~l~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~ 162 (288)
T cd01538 93 ----S------NVDYYVSFDNEKVGELQGQALVDGLGAKGKPPGNIELIAGSPTDNNAKLFFNGAMSVLKPLIDSGKITI 162 (288)
T ss_pred ----C------CcceEEEeChHHHHHHHHHHHHHHHhhcCCCCceEEEEECCCCCchHHHHHHHHHHHHHhccccCCeeE
Confidence 0 111111111 12344444555444 123468998876543 223456777766 332
Q ss_pred EEEEeeeeecCCCCcH---H----HHHHcC-CCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCHHH
Q 023179 205 VRLNTYTTEPVHHVDQ---T----VLKQAL-SIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETT 264 (286)
Q Consensus 205 ~~~~vY~~~~~~~~~~---~----~~~~~~-~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~~T 264 (286)
.. ..|. .....+ + +++.-. .+++|++.+...+...+..+.+.+. .++.+++++...
T Consensus 163 ~~-~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~I~~~~d~~a~g~~~al~~~g~~~dv~vvg~d~~~ 227 (288)
T cd01538 163 VG-EVAT---PDWDPETAQKRMENALTANYNKVDGVLAANDGTAGGAIAALKAAGLAGKPPVTGQDAEL 227 (288)
T ss_pred Ee-cccc---CCCCHHHHHHHHHHHHHhCCCCccEEEeCCcHHHHHHHHHHHHcCCCCCceEEecCCCH
Confidence 21 1111 111111 1 222123 6899999998888888888776542 257778887643
No 115
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=89.21 E-value=4.7 Score=36.87 Aligned_cols=155 Identities=17% Similarity=0.101 Sum_probs=85.8
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~---l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
.+..++.|+++..+-+-+.. ..+++.+. ++.....|.|++--|---..--+.+.+.-.....+=.+.+.-...|
T Consensus 61 ~k~a~~~Gi~~~~~~l~~~~---s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~KDVDGl~~~n~g~l 137 (299)
T PLN02516 61 RKACAEVGIKSFDVDLPENI---SEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKL 137 (299)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcccccCccCHhhHhhH
Confidence 34566789887655443222 12334444 4445678999998883211111112221111222222233322222
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCc
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD 219 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~ 219 (286)
-.- +....+.| .|+.++++.|..+. ..|++++++ |++....-|...|.++|++|+.+...+. + .
T Consensus 138 ~~~------~~~~~~~P--cTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~----n-l 204 (299)
T PLN02516 138 AMK------GREPLFLP--CTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTP----D-P 204 (299)
T ss_pred hcC------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC----C-H
Confidence 111 11122444 57888887776553 378898887 8888888899999999999988765431 1 1
Q ss_pred HHHHHHcCCCCEEEEeChHH
Q 023179 220 QTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 220 ~~~~~~~~~~d~IvftS~sa 239 (286)
++. ..+.|+|+..-+..
T Consensus 205 ~~~---~~~ADIvv~AvGk~ 221 (299)
T PLN02516 205 ESI---VREADIVIAAAGQA 221 (299)
T ss_pred HHH---HhhCCEEEEcCCCc
Confidence 222 35788888776653
No 116
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=88.98 E-value=4.9 Score=31.37 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=62.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-----HHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~-----av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
.-....|+..|++++++.... | .+++.+.. ...+.|.|++.+.. .++.+.+.+++.+..++++++-|..
T Consensus 17 ~~~~~~l~~~G~~vi~lG~~v--p---~e~~~~~a-~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~ 90 (122)
T cd02071 17 KVIARALRDAGFEVIYTGLRQ--T---PEEIVEAA-IQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGII 90 (122)
T ss_pred HHHHHHHHHCCCEEEECCCCC--C---HHHHHHHH-HHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 455667889999999887652 2 13444444 23578888887643 3455667777766678888888755
Q ss_pred hHHH---HHHhhhccCCCCceeccCCCCCHHHHHHhc
Q 023179 138 TASI---FEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (286)
Q Consensus 138 Ta~~---L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L 171 (286)
..+. ++++ |+...+. .+.+.+..+..|
T Consensus 91 ~~~~~~~~~~~------G~d~~~~-~~~~~~~~~~~~ 120 (122)
T cd02071 91 PPEDYELLKEM------GVAEIFG-PGTSIEEIIDKI 120 (122)
T ss_pred CHHHHHHHHHC------CCCEEEC-CCCCHHHHHHHH
Confidence 5443 4556 9876554 455677776655
No 117
>PRK09701 D-allose transporter subunit; Provisional
Probab=88.81 E-value=6.8 Score=35.40 Aligned_cols=185 Identities=9% Similarity=0.006 Sum_probs=94.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEEChhh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
..+.+.++++|.++..+..- ...+.+...+.+++ ...+|.||+..... ....+..+.+ .+++++++|...
T Consensus 44 ~gi~~~a~~~g~~v~~~~~~---~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~---~giPvV~~~~~~ 117 (311)
T PRK09701 44 KGIEDEAKTLGVSVDIFASP---SEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWK---KGIYLVNLDEKI 117 (311)
T ss_pred HHHHHHHHHcCCeEEEecCC---CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH---CCCcEEEeCCCC
Confidence 34456677889888765211 11121211222222 25689999976432 2222333333 368899998654
Q ss_pred HH-HHHHhhhccCCCCceeccC-C-CCCHHHHHHhcccC-CCCCCEEEEEcCCCC-------hhHHHHHHHhCC-CeeEE
Q 023179 139 AS-IFEEVIQSSKCSLDVAFSP-S-KATGKILASELPKN-GKKKCTVLYPASAKA-------SNEIEEGLSNRG-FEVVR 206 (286)
Q Consensus 139 a~-~L~~~~~~~~~G~~~~~~~-~-~~~~e~L~~~L~~~-~~~~~rvL~~~g~~~-------~~~L~~~L~~~G-~~V~~ 206 (286)
.. .+... .+-...++. . ...++..++.|.+. ...++++.++.|... ..-+.+.|+++| ..+..
T Consensus 118 ~~~~~~~~-----~~~~~~~V~~d~~~~g~~aa~~L~~~~g~~~~~i~~l~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~ 192 (311)
T PRK09701 118 DMDNLKKA-----GGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVA 192 (311)
T ss_pred Cccccccc-----CCceEEEeccchHHHHHHHHHHHHHHhCCCCCEEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 21 11000 011111221 1 22345566666553 222478998876543 235677888877 54321
Q ss_pred EEeeeeecCCCCc---HHHHHH----cCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCHH
Q 023179 207 LNTYTTEPVHHVD---QTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 263 (286)
Q Consensus 207 ~~vY~~~~~~~~~---~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~~ 263 (286)
.+. ..... ....+. -..+|+|++.+-..+...++.+.+.+. .++.+++++..
T Consensus 193 --~~~---~~~~~~~~~~~~~~ll~~~~~~~~I~~~~d~~A~g~~~al~~~G~~~dv~vvg~d~~ 252 (311)
T PRK09701 193 --SQP---ADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGI 252 (311)
T ss_pred --ecC---CCCCHHHHHHHHHHHHHhCCCCCEEEECCcchHHHHHHHHHHcCCCCCEEEEEeCCC
Confidence 111 11111 122222 236899999998888777777765432 35667777654
No 118
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=88.74 E-value=8.8 Score=33.50 Aligned_cols=156 Identities=10% Similarity=0.050 Sum_probs=80.6
Q ss_pred CCccEEEEeCH--HHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceecc-CCC-CCHHHHHHhcccCCC
Q 023179 101 TIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFS-PSK-ATGKILASELPKNGK 176 (286)
Q Consensus 101 ~~~d~IvFTS~--~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~-~~~-~~~e~L~~~L~~~~~ 176 (286)
...|.||+.+. .++...++.+.+ .+++++.++..... . +....++ +.. ..+..+++.|.+...
T Consensus 59 ~~vDgiii~~~~~~~~~~~i~~~~~---~gIpvV~~d~~~~~----~------~~~~~~V~~d~~~~g~~aa~~l~~~~~ 125 (274)
T cd06311 59 RKIDALVILPFESAPLTQPVAKAKK---AGIFVVVVDRGLSS----P------GAQDLYVAGDNYGMGRVAGEYIATKLG 125 (274)
T ss_pred cCCCEEEEeCCCchhhHHHHHHHHH---CCCeEEEEcCCCCC----C------cccceEEcCCcHHHHHHHHHHHHHHhC
Confidence 46899999864 333333444433 47888888753211 0 1111112 221 223445555655432
Q ss_pred CCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHH----HHHcCCCCEEEEeChHHHHHHHHH
Q 023179 177 KKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTV----LKQALSIPVVAVASPSAVRSWVNL 246 (286)
Q Consensus 177 ~~~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~----~~~~~~~d~IvftS~sav~~~~~~ 246 (286)
..++++++.|... ..-+.+.|+++|.++.. .+..........+. ++.-..+++|++.+-..+...++.
T Consensus 126 g~~~i~~~~g~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 203 (274)
T cd06311 126 GNGNIVVLRGIPTPIDNERVDAFDAAIAKYPIKILD--RQYANWNRDDAFSVMQDLLTKFPKIDAVWAHDDDMAVGVLAA 203 (274)
T ss_pred CCCeEEEEECCCCcchhHHHHHHHHHHhhCCcEEEe--ccCCCCcHHHHHHHHHHHHHhCCCcCEEEECCCcHHHHHHHH
Confidence 4468998876532 23466777888755433 22111111111112 221245899999998887777777
Q ss_pred hccccCC-CceEEEe--CHHHHHHHHHcC
Q 023179 247 ISDTEQW-SNSVACI--GETTASAAKRLG 272 (286)
Q Consensus 247 ~~~~~~~-~~~iv~I--G~~Ta~~l~~~G 272 (286)
+.+.+.. +..+++. .+.+.+++++ |
T Consensus 204 l~~~g~~~~~~ivg~d~~~~~~~~i~~-g 231 (274)
T cd06311 204 IKQAGRTDIKFVVGGAGSKDMIKMIMD-G 231 (274)
T ss_pred HHHcCCCCCceEEEeCCCHHHHHHHHC-C
Confidence 7765432 3455553 3444444444 5
No 119
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=88.71 E-value=6.7 Score=35.19 Aligned_cols=184 Identities=8% Similarity=0.048 Sum_probs=87.3
Q ss_pred HHHHHHHh--CCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCH--HHHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 64 KLIKALAK--HRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 64 ~l~~~L~~--~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~--~av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
.+.+.+++ .|..+...+.- ..++ .+.++..+ ....|.||+... .++...++.+.. .++++++++..
T Consensus 20 gi~~~a~~~~~g~~~~~~~~~---~~~~~q~~~i~~l~--~~~vdgiii~~~~~~~~~~~~~~~~~---~giPvV~~~~~ 91 (303)
T cd01539 20 NLEDIQKENGGKVEFTFYDAK---NNQSTQNEQIDTAL--AKGVDLLAVNLVDPTAAQTVINKAKQ---KNIPVIFFNRE 91 (303)
T ss_pred HHHHHHHhhCCCeeEEEecCC---CCHHHHHHHHHHHH--HcCCCEEEEecCchhhHHHHHHHHHH---CCCCEEEeCCC
Confidence 44555666 56666554321 1111 11222222 357999998743 334444444443 46789998865
Q ss_pred hHHH-HHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCC----------CCC-EEEEEcCCCC-------hhHHHHHH
Q 023179 138 TASI-FEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGK----------KKC-TVLYPASAKA-------SNEIEEGL 197 (286)
Q Consensus 138 Ta~~-L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~----------~~~-rvL~~~g~~~-------~~~L~~~L 197 (286)
.... .... ..+. .+... ...++.+++.|.+... .++ .++++.|... ..-+.+.|
T Consensus 92 ~~~~~~~~~-----~~~~-~V~~d~~~~g~~~a~~l~~~~~~~~~~~~~~~~g~~~i~~~~g~~~~~~~~~R~~gf~~~l 165 (303)
T cd01539 92 PEEEDIKSY-----DKAY-YVGTDAEQSGILQGKLIADYWNANKDALDKNGDGIIQYVMLKGEPGHPDAIARTKYSIETL 165 (303)
T ss_pred Ccccccccc-----cccc-eeeecHHHHHHHHHHHHHHHhhccccccccCCCCceEEEEEEcCCCCchhhhhhhhHHHHH
Confidence 3211 1111 0111 11122 1223444455543210 111 3566666443 22356788
Q ss_pred HhCCCeeEEEEeeeeecCCCCcHHHHHH-c---C-CCCEEEEeChHHHHHHHHHhccccC------CCceEEEeC
Q 023179 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQ-A---L-SIPVVAVASPSAVRSWVNLISDTEQ------WSNSVACIG 261 (286)
Q Consensus 198 ~~~G~~V~~~~vY~~~~~~~~~~~~~~~-~---~-~~d~IvftS~sav~~~~~~~~~~~~------~~~~iv~IG 261 (286)
+++|..+....+...........+..+. + . .+++|++.+...+-..++.+.+.+. .++.+++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~p~~~~di~iig~d 240 (303)
T cd01539 166 NDAGIKTEELASDTANWDRAQAKDKMDALLLKYGDKIEAVIANNDAMALGAIEALQKYGYNKGDKSKNIPVVGVD 240 (303)
T ss_pred HhcCCCeEEEEeecCCCCHHHHHHHHHHHHHhcCCCccEEEECCchHHHHHHHHHHHcCCCcCCCCCceEEEccC
Confidence 8888766544332211111111112222 2 2 3899999888877666666665431 246677775
No 120
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=88.54 E-value=3.9 Score=35.68 Aligned_cols=179 Identities=12% Similarity=0.138 Sum_probs=87.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
.+.+.++++|+++..+..- ..++ .+.+...+ ...+|.||+.+.. .....++.+.+ .++++++++....
T Consensus 20 ~i~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~--~~~~dgiii~~~~~~~~~~~l~~~~~---~~ipvV~~~~~~~ 91 (277)
T cd06319 20 GVKSKAKALGYDAVELSAE---NSAKKELENLRTAI--DKGVSGIIISPTNSSAAVTLLKLAAQ---AKIPVVIADIGAE 91 (277)
T ss_pred HHHHHHHhcCCeEEEecCC---CCHHHHHHHHHHHH--hcCCCEEEEcCCchhhhHHHHHHHHH---CCCCEEEEecCCC
Confidence 3445666789888654331 1111 11222223 2579999987643 22333444443 3678888875321
Q ss_pred HHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccC----CCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEE
Q 023179 140 SIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKN----GKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRL 207 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~----~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~ 207 (286)
.. .....+... ...+..+++.|.+. ....+++.++.+... ..-+.+.|+++|..+..+
T Consensus 92 ----~~------~~~~~v~~d~~~~g~~~~~~l~~~~~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~ 161 (277)
T cd06319 92 ----GG------DYVSYIKSDNYEGAYDLGKFLAAAMKAQGWADGKVGMVAIPQKRKNGQKRTKGFKEAMKEAGCDLAGI 161 (277)
T ss_pred ----CC------ceEEEEeeccHHHHHHHHHHHHHHHHhhCCCCCcEEEEeccCCCccHHHHHHHHHHHHHhcCCceEee
Confidence 01 111111122 12233344444332 113468888875432 235667888888765422
Q ss_pred EeeeeecCC-CCcHH----HHHHcCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCH
Q 023179 208 NTYTTEPVH-HVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 262 (286)
Q Consensus 208 ~vY~~~~~~-~~~~~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~ 262 (286)
+...... ....+ +++.-..+++|+..+...+...++.+.+.+. .++.+++++.
T Consensus 162 --~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~di~vvg~d~ 220 (277)
T cd06319 162 --RQQKDFSYQETFDYTNDLLTANPDIRAIWLQGSDRYQGALDAIATAGKTGKVLLICFDA 220 (277)
T ss_pred --ccCCCCCHHHHHHHHHHHHHhCCCCCEEEECCCccchHHHHHHHHcCCCCCEEEEEcCC
Confidence 2111111 11111 2221235788888877766666666655432 2466777754
No 121
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=88.29 E-value=8 Score=35.00 Aligned_cols=178 Identities=8% Similarity=0.025 Sum_probs=89.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
.+.+.++++|+++...+.- ..++. .+..+.+ ....+|.||+.+...-...++.+.+ .+++++.++....
T Consensus 84 gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~-~~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~--- 153 (331)
T PRK14987 84 GIESVTDAHGYQTMLAHYG---YKPEMEQERLESM-LSWNIDGLILTERTHTPRTLKMIEV---AGIPVVELMDSQS--- 153 (331)
T ss_pred HHHHHHHHCCCEEEEecCC---CCHHHHHHHHHHH-HhcCCCEEEEcCCCCCHHHHHHHHh---CCCCEEEEecCCC---
Confidence 4555666789887654321 11111 1111222 1357999999754322223333433 3677877653210
Q ss_pred HHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeecC
Q 023179 143 EEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (286)
. +....+... ...+..+++.|.+. ..+++.++.+... ..-+.+.|.++|.....+ ++.....
T Consensus 154 --~------~~~~~V~~Dn~~~~~~a~~~L~~~--Gh~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~~~~ 222 (331)
T PRK14987 154 --P------CLDIAVGFDNFEAARQMTTAIIAR--GHRHIAYLGARLDERTIIKQKGYEQAMLDAGLVPYSV-MVEQSSS 222 (331)
T ss_pred --C------CCCceEEeCcHHHHHHHHHHHHHC--CCceEEEEcCCCcccHHHHHHHHHHHHHHcCCCccce-eecCCCC
Confidence 1 111111222 12344555666654 3478999866432 244667888888643222 2221111
Q ss_pred CCCcHHHHHH----cCCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 216 HHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 216 ~~~~~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
.....+..++ ...+++|++++-..+--.+..+.+.+. .++.++.++.
T Consensus 223 ~~~~~~~~~~~l~~~~~~~ai~~~nD~~A~g~~~al~~~g~~vP~disvigfD~ 276 (331)
T PRK14987 223 YSSGIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHG 276 (331)
T ss_pred hhhHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCccEEEeeCC
Confidence 1111122222 135899999998888777777665432 2466676654
No 122
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=87.80 E-value=4.3 Score=35.57 Aligned_cols=188 Identities=12% Similarity=0.109 Sum_probs=92.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHH-HHHHHHHcCCCCcEEEEEChhhHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~-~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
.+.+.++++|++++.+..-. ..+.+...+.++. -..+|.||+++...-.. .+..+.. .++++++++.....
T Consensus 20 gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~---~giPvV~~~~~~~~ 93 (268)
T cd06306 20 GMVEEAKRLGVSLKLLEAGG---YPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVA---ASIPVIALVNDINS 93 (268)
T ss_pred HHHHHHHHcCCEEEEecCCC---CCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHH---CCCCEEEeccCCCC
Confidence 44566778898877653211 1111111122221 25799999986432111 2333333 47788888643211
Q ss_pred HHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCC---CCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEe
Q 023179 141 IFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGK---KKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~---~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~~~~v 209 (286)
. +....+... ...+..+++.|.+... ..++++++.|.... ..+.+.|++.|+++... .
T Consensus 94 ----~------~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~~i~~l~g~~~~~~~~~R~~g~~~~~~~~~~~~~~~-~ 162 (268)
T cd06306 94 ----P------DITAKVGVSWYEMGYQAGEYLAQRHPKGSKPAKVAWFPGPKGAGWVKAVEKGFRDALAGSAIEISAI-K 162 (268)
T ss_pred ----c------ceeEEecCChHHHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCchHHHHHHHHHHHHhhcCcEEeee-c
Confidence 1 211112211 1224445555554331 12799999875542 34567788888766431 1
Q ss_pred eeeecCCCCcHHH----HHHcCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEe--CHHHHHHHHH
Q 023179 210 YTTEPVHHVDQTV----LKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACI--GETTASAAKR 270 (286)
Q Consensus 210 Y~~~~~~~~~~~~----~~~~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~I--G~~Ta~~l~~ 270 (286)
+.. .......+. ++.-..+++|+++ ...+...+..+.+.+. .++.++++ .|...+++++
T Consensus 163 ~~~-~~~~~~~~~~~~~l~~~~~~~~i~~~-d~~a~~~~~~l~~~g~p~di~vig~~~~p~~~~~l~~ 228 (268)
T cd06306 163 YGD-TGKEVQRKLVEEALEAHPDIDYIVGS-AVAAEAAVGILRQRGLTDQIKIVSTYLSHAVYRGLKR 228 (268)
T ss_pred cCC-ccHHHHHHHHHHHHHhCCCcCEEeec-chhhhHHHHHHHhcCCCCCeEEEecCCCHHHHHHHHc
Confidence 111 111111111 2212368888765 5555556666655432 24555554 4556666655
No 123
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=87.73 E-value=1.1 Score=40.16 Aligned_cols=139 Identities=21% Similarity=0.280 Sum_probs=81.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc-CCCccEEEEe-----------CHHHHHHHHHHHHHcCC---C
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTIFDWIIIT-----------SPEAGSVFLEAWKEAGT---P 127 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~-~~~~d~IvFT-----------S~~av~~~~~~l~~~~~---~ 127 (286)
.+-.+.|.+.|++-+.+..+.+.+..+++.+.+.++. ...|+-|.+. +..-.+.+.+.+.+.-. .
T Consensus 61 ~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~~~ 140 (262)
T PF06180_consen 61 EEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPKKRK 140 (262)
T ss_dssp HHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS-TT-T
T ss_pred HHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccccccccccCChHHHHHHHHHHHHhccccCC
Confidence 3445667789999999999999888777777776644 3457777765 45666777777765422 5
Q ss_pred CcEEEEEChhhH-------HHHHHhhhccCCCCceeccC---CCCCHHHHHHhcccCCCCCCE-----EEEEcCCCChh-
Q 023179 128 NVRIGVVGAGTA-------SIFEEVIQSSKCSLDVAFSP---SKATGKILASELPKNGKKKCT-----VLYPASAKASN- 191 (286)
Q Consensus 128 ~~~i~aVG~~Ta-------~~L~~~~~~~~~G~~~~~~~---~~~~~e~L~~~L~~~~~~~~r-----vL~~~g~~~~~- 191 (286)
+..++.+|++|. ..|+..++. .|....++. ..++.+.+++.|.+... ++ ++++.|+....
T Consensus 141 ~~a~vlmGHGt~h~an~~Y~~l~~~l~~--~~~~~v~vgtvEG~P~~~~vi~~L~~~g~--k~V~L~PlMlVAGdHa~nD 216 (262)
T PF06180_consen 141 DEAVVLMGHGTPHPANAAYSALQAMLKK--HGYPNVFVGTVEGYPSLEDVIARLKKKGI--KKVHLIPLMLVAGDHAKND 216 (262)
T ss_dssp TEEEEEEE---SCHHHHHHHHHHHHHHC--CT-TTEEEEETTSSSBHHHHHHHHHHHT---SEEEEEEESSS--HHHHCC
T ss_pred CCEEEEEeCCCCCCccHHHHHHHHHHHh--CCCCeEEEEEeCCCCCHHHHHHHHHhcCC--CeEEEEecccccchhhhhh
Confidence 777889999875 334443322 153333332 24678888888876542 33 34456665433
Q ss_pred -------HHHHHHHhCCCeeE
Q 023179 192 -------EIEEGLSNRGFEVV 205 (286)
Q Consensus 192 -------~L~~~L~~~G~~V~ 205 (286)
..+..|++.|++|+
T Consensus 217 maGde~dSWks~L~~~G~~v~ 237 (262)
T PF06180_consen 217 MAGDEEDSWKSRLEAAGFEVT 237 (262)
T ss_dssp CCSSSTTSHHHHHHHTT-EEE
T ss_pred hcCCCcchHHHHHHHCCCEEE
Confidence 45899999998773
No 124
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=87.57 E-value=8.1 Score=34.05 Aligned_cols=190 Identities=11% Similarity=0.048 Sum_probs=90.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCH-HHHHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSP-EAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~-~av~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
..+.+.++++|++++..+....... +.+...+.++. ....|.||++.. ......++.+.+. +.+++.+...+.
T Consensus 20 ~~i~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~~~~~~l~~~---~~p~V~i~~~~~ 95 (280)
T cd06303 20 ASFTARLEELNIPYELTQFSSRPGI-DHRLQSQQLNEALQSKPDYLIFTLDSLRHRKLIERVLAS---GKTKIILQNITT 95 (280)
T ss_pred HHHHHHHHHcCCcEEEEEeccCccc-CHHHHHHHHHHHHHcCCCEEEEcCCchhhHHHHHHHHhC---CCCeEEEeCCCC
Confidence 3556777789988876544322111 11111122211 367999999853 2222333434332 334444432211
Q ss_pred HHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhC-CCeeEEEEeee
Q 023179 140 SIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNR-GFEVVRLNTYT 211 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~L~~~L~~~-G~~V~~~~vY~ 211 (286)
. .+... ...++.. +... ...+..+++.|.+.....+++.++.+... ..-+.+.|+++ |..+.. ++.
T Consensus 96 ~-~~~~~--~~~~~~~-V~~d~~~~g~~~~~~L~~~~~g~~~i~~l~~~~~~~~~~R~~gf~~al~~~~~~~~~~--~~~ 169 (280)
T cd06303 96 P-VKAWL--KHQPLLY-VGFDHAAGARLLADYFIKRYPNHARYAMLYFSPGYISTARGDTFIDCVHARNNWTLTS--EFY 169 (280)
T ss_pred C-ccccc--cCCCceE-eCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCcchhHHHHHHHHHHHhCCCceEEE--eec
Confidence 0 00000 0001111 1111 12345566666652223478888876432 23456778777 654321 222
Q ss_pred eecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCH
Q 023179 212 TEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 262 (286)
Q Consensus 212 ~~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~ 262 (286)
.........+...+ + .++++|++++-..+-..+..+.+.+. .++.++.++.
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~l~al~~~G~~~dv~vvg~d~ 225 (280)
T cd06303 170 TDATRQKAYQATSDILSNNPDVDFIYACSTDIALGASDALKELGREDDILINGWGG 225 (280)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEECCcHHHHHHHHHHHHcCCCCCcEEEecCC
Confidence 11111111111222 1 35899999988887777777766542 2577777765
No 125
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=87.18 E-value=15 Score=32.98 Aligned_cols=188 Identities=11% Similarity=0.078 Sum_probs=88.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CC--CccEEEEeCHHH-HHHHHHHHHHcCCCCcEEEEEChhh
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DT--IFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~--~~d~IvFTS~~a-v~~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
.+.+.++++|+++..+.. . .+.+...+.++. .. ..|+||+++... ...+++.+.+ .+++++.++...
T Consensus 21 gi~~~~~~~g~~v~~~~~---~--~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~---~giPvV~~~~~~ 92 (305)
T cd06324 21 FMQAAADDLGIELEVLYA---E--RDRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEG---AGVKLFLVNSGL 92 (305)
T ss_pred HHHHHHHhcCCeEEEEeC---C--CCHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHh---CCCeEEEEecCC
Confidence 455667788888766422 1 122211122211 24 799999986542 3334444433 477899998654
Q ss_pred HHH-HHHhhhccC---CCCceeccCC-CCCHHHHHHhcccCCCC------CCEEEEEcCCCC-------hhHHHHHHHhC
Q 023179 139 ASI-FEEVIQSSK---CSLDVAFSPS-KATGKILASELPKNGKK------KCTVLYPASAKA-------SNEIEEGLSNR 200 (286)
Q Consensus 139 a~~-L~~~~~~~~---~G~~~~~~~~-~~~~e~L~~~L~~~~~~------~~rvL~~~g~~~-------~~~L~~~L~~~ 200 (286)
... .+.. .+.. .++-..+.+. ...++.+++.|.+...+ ..+++++.+... ..-+.+.++++
T Consensus 93 ~~~~~~~~-~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~g~~~~~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~ 171 (305)
T cd06324 93 TEAQAREL-GPPREKFPDWLGQLLPNDEEAGYLMAEALISQARSVQAPGGRIDLLAISGDPTTPAAILREAGLRRALAEH 171 (305)
T ss_pred Ccchhhcc-cccccccCceeeeeccCcHHHHHHHHHHHHHHhhcccCCCCceeEEEEeCCCCChHHHHHHHHHHHHHHHC
Confidence 221 1111 0000 0000111122 12345555666543211 125888876543 23356677777
Q ss_pred C-CeeEEEEeeeeecCCCCcHHHHHH----cCCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 201 G-FEVVRLNTYTTEPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 201 G-~~V~~~~vY~~~~~~~~~~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
| +.+.. .+|.. .......+..+. ...+++|++.+-..+...+..+.+.+. .++.++.++.
T Consensus 172 g~~~~~~-~~~~~-~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vp~di~vig~D~ 239 (305)
T cd06324 172 PDVRLRQ-VVYAG-WSEDEAYEQAENLLKRYPDVRLIWAANDQMAFGALRAAKEAGRKPGRDVLFGGVNW 239 (305)
T ss_pred CCceEee-eecCC-CCHHHHHHHHHHHHHHCCCccEEEECCchHHHHHHHHHHHcCCCcCCCEEEEecCC
Confidence 6 33211 22211 111111111221 235899988887777767666665432 2455666643
No 126
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=87.12 E-value=7.3 Score=34.77 Aligned_cols=188 Identities=13% Similarity=0.067 Sum_probs=85.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
.+.+.++++|++++.+..-.. .+.+...+.++. ...+|.||+.+.. .+...+..+ . .+++++.++....
T Consensus 20 gi~~~a~~~g~~v~~~~~~~~---~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~-~---~~iPvV~~~~~~~ 92 (295)
T TIGR02955 20 GMVEQAKHLGVELKVLEAGGY---PNLDKQLAQIEQCKSWGADAILLGTVSPEALNHDLAQL-T---KSIPVFALVNQID 92 (295)
T ss_pred HHHHHHHHhCCEEEEEcCCCC---CCHHHHHHHHHHHHHcCCCEEEEecCChhhhhHHHHHH-h---cCCCEEEEecCCC
Confidence 344566778988876442111 111111122211 3679999998642 222222222 1 3678887743321
Q ss_pred HHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCC---CCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEe
Q 023179 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKK---KCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~---~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~v 209 (286)
.. . .+..+..-....+..+++.|.+.... .++++++.|... ..-+.+.|++.|+.+.. ..
T Consensus 93 ~~---~------~~~~V~~D~~~~g~~~~~~L~~~~~~~~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~-~~ 162 (295)
T TIGR02955 93 SN---Q------VKGRVGVDWYQMGYQAGEYLAQRHPKGSGPTTLAWLPGPKNRGGTKPVTQGFRAALEGSDVEISA-IL 162 (295)
T ss_pred cc---c------eeEEEeecHHHHHHHHHHHHHHhcccCCCCeeEEEEeCCCcCCchhHHHHHHHHHHhcCCcEEEE-Ee
Confidence 11 0 11111111112344455555542211 357999877653 23566788888876643 12
Q ss_pred eeeecCCCCc----HHHHHHcCCCCEEEEeChHHHHHHHHHhcccc-CCCceEEEe--CHHHHHHHHH
Q 023179 210 YTTEPVHHVD----QTVLKQALSIPVVAVASPSAVRSWVNLISDTE-QWSNSVACI--GETTASAAKR 270 (286)
Q Consensus 210 Y~~~~~~~~~----~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~-~~~~~iv~I--G~~Ta~~l~~ 270 (286)
+.. ...... +++++.-..+|+| +.+-..+...+..+.+.+ ..++.+++. +|.....+++
T Consensus 163 ~~~-~~~~~~~~~~~~~L~~~~~~d~i-~~~d~~a~g~l~al~~~g~~~dv~vvg~~~~p~~~~~l~~ 228 (295)
T TIGR02955 163 WAD-NDKELQRNLLQDLLKKHPDIDYL-VGSAVAAEAAISELRSLHMTQQIKLVSTYLSHGVYRGLKR 228 (295)
T ss_pred cCC-CcHHHHHHHHHHHHHhCCCcCEE-EeccHHHHHHHHHHHhhCccCCeEEEEecCCHHHHHHHHc
Confidence 111 110111 1122222457876 556555555555554332 123444433 4555555544
No 127
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.73 E-value=3.4 Score=30.85 Aligned_cols=80 Identities=8% Similarity=0.026 Sum_probs=47.3
Q ss_pred EEEEEcC-CCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccc-cCCCceE
Q 023179 180 TVLYPAS-AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDT-EQWSNSV 257 (286)
Q Consensus 180 rvL~~~g-~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~-~~~~~~i 257 (286)
+||++.| +.....+.+.+++.|++.... ............+...+.+.|+|++.....-...+..+++. ...+.++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h--g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~ 78 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH--GRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPI 78 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE--ecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcE
Confidence 4788888 445667899999999877555 22222222211233345788999888766656555555543 1224565
Q ss_pred EEeC
Q 023179 258 ACIG 261 (286)
Q Consensus 258 v~IG 261 (286)
+..-
T Consensus 79 ~~~~ 82 (97)
T PF10087_consen 79 IYSR 82 (97)
T ss_pred EEEC
Confidence 5443
No 128
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=86.47 E-value=9.9 Score=33.12 Aligned_cols=171 Identities=13% Similarity=0.054 Sum_probs=83.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (286)
.+.+.+++.|+++...... .+ ....++.+.+ .....|.||+++...-..+.+.+.+ ..+.+++.++..+..
T Consensus 22 gi~~~~~~~gy~~~~~~~~--~~-~~~~~~~~~l-~~~~vdgiii~~~~~~~~~~~~~~~--~~~ipvv~~~~~~~~--- 92 (260)
T cd06304 22 GLEKAEKELGVEVKYVESV--ED-ADYEPNLRQL-AAQGYDLIFGVGFGFMDAVEKVAKE--YPDVKFAIIDGVVDA--- 92 (260)
T ss_pred HHHHHHHhcCceEEEEecC--CH-HHHHHHHHHH-HHcCCCEEEECCcchhHHHHHHHHH--CCCCEEEEecCccCC---
Confidence 3445667788887764322 11 1111222223 2356899999886533333343322 125688888865421
Q ss_pred HhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeecC-C
Q 023179 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPV-H 216 (286)
Q Consensus 144 ~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~~~-~ 216 (286)
.. .+.....-....+..+. .+.......+++.++.+... ..-+.+.++++|..+....++..... .
T Consensus 93 ~~------~~~~v~~d~~~~~~~a~-~l~~~~~g~~~I~~i~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~ 165 (260)
T cd06304 93 PP------NVASYVFREYEGSYLAG-VLAALMTKTGKVGFVGGMPIPEVNRFINGFAAGAKSVNPDITVLVIYTGSFFDP 165 (260)
T ss_pred CC------CeeeeecchHHHHHHHH-HHHHHhccCCceEEEeccccHHHHHHHHHHHHHHHHhCCCcEEEEEEecCccCc
Confidence 01 22221111111122233 23222113468888866432 22455678888866554333322211 1
Q ss_pred CCcHHHHHH-c-CCCCEEEEeChHHHHHHHHHhccc
Q 023179 217 HVDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 217 ~~~~~~~~~-~-~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
....+..+. + ..+|+|+.++-..+...+..+.+.
T Consensus 166 ~~~~~~~~~~l~~~~~ai~~~~d~~A~gv~~al~~~ 201 (260)
T cd06304 166 AKGKEAALALIDQGADVIFAAAGGTGPGVIQAAKEA 201 (260)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCchHHHHHHHHc
Confidence 111222222 2 347999888877776676666543
No 129
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=86.23 E-value=4.4 Score=37.44 Aligned_cols=173 Identities=12% Similarity=0.101 Sum_probs=82.5
Q ss_pred HHHHHHHhCCCcEEE-eceEEeeeCCCch----HHHHHHhcCCCccEEEEeC--HHHHHHHHHHHHHcCCCCcEEEEECh
Q 023179 64 KLIKALAKHRIDCLE-LPLIQHAQGPDTD----RLSSVLNADTIFDWIIITS--PEAGSVFLEAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~-~P~~~~~~~~~~~----~l~~~l~~~~~~d~IvFTS--~~av~~~~~~l~~~~~~~~~i~aVG~ 136 (286)
-+.+..+++|+++.. .|. ..+.+ .++..+ ...+|.|+++. ++++...++.+.+ .+++++++..
T Consensus 44 Gi~~aa~~~G~~v~~~~~~-----~~d~~~q~~~i~~li--~~~vdgIiv~~~d~~al~~~l~~a~~---~gIpVV~~d~ 113 (336)
T PRK15408 44 GAKEAGKELGVDVTYDGPT-----EPSVSGQVQLINNFV--NQGYNAIIVSAVSPDGLCPALKRAMQ---RGVKVLTWDS 113 (336)
T ss_pred HHHHHHHHhCCEEEEECCC-----CCCHHHHHHHHHHHH--HcCCCEEEEecCCHHHHHHHHHHHHH---CCCeEEEeCC
Confidence 345666788988864 221 11211 222333 36799999974 3444545554444 3778888876
Q ss_pred hhHHHHHHhhhccCCCCceeccC-CC--CCHHHHHHhcccCCC-CCCEEEEEcCCCCh-------hHHHHHHHhCCCeeE
Q 023179 137 GTASIFEEVIQSSKCSLDVAFSP-SK--ATGKILASELPKNGK-KKCTVLYPASAKAS-------NEIEEGLSNRGFEVV 205 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~~-~~--~~~e~L~~~L~~~~~-~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~ 205 (286)
..... . ...++. .. ..++.+++.+.+... .+.+++++.|.... +.+.+.+.+.+-.+.
T Consensus 114 ~~~~~----------~-~~~~V~~~~~~~~G~~~~~~l~~~l~~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~ 182 (336)
T PRK15408 114 DTKPE----------C-RSYYINQGTPEQLGSMLVEMAAKQVGKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWE 182 (336)
T ss_pred CCCCc----------c-ceEEEecCCHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCE
Confidence 53110 1 111221 11 123333344443332 34688888775431 234445543322332
Q ss_pred EEEeeeeecCCCCcHH-------HHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEe
Q 023179 206 RLNTYTTEPVHHVDQT-------VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI 260 (286)
Q Consensus 206 ~~~vY~~~~~~~~~~~-------~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~I 260 (286)
.+.. ....+..+. +++.-.++++|+.++..++....+.+++.+..++.++.+
T Consensus 183 vv~~---~~~~~d~~~a~~~~~~lL~~~pdi~aI~~~~~~~~~Ga~~Al~~~g~~~v~VvG~ 241 (336)
T PRK15408 183 IVTT---QFGYNDATKSLQTAEGILKAYPDLDAIIAPDANALPAAAQAAENLKRDKVAIVGF 241 (336)
T ss_pred EEee---cCCCCcHHHHHHHHHHHHHHCCCCcEEEECCCccHHHHHHHHHhCCCCCEEEEEe
Confidence 2322 222222221 222225789988887766655555555443223444444
No 130
>PRK09492 treR trehalose repressor; Provisional
Probab=85.96 E-value=25 Score=31.39 Aligned_cols=175 Identities=10% Similarity=0.059 Sum_probs=91.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
..+.+.++++|+++..+.. ...++. ....+.+ ....+|.||+.+..... .+.+... ..++++++...
T Consensus 82 ~~i~~~~~~~gy~~~~~~~---~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~--~~~l~~~---~~pvv~i~~~~--- 149 (315)
T PRK09492 82 RTMLPAFYEQGYDPIIMES---QFSPEKVNEHLGVL-KRRNVDGVILFGFTGIT--EEMLAPW---QDKLVLLARDA--- 149 (315)
T ss_pred HHHHHHHHHcCCeEEEEec---CCChHHHHHHHHHH-HhcCCCEEEEeCCCccc--HHHHHhc---CCCEEEEeccC---
Confidence 4456677788988754332 111111 1122223 23568999987632211 1223222 34677887531
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCC--------ChhHHHHHHHhCCCeeEEEEeeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK--------ASNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~--------~~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
. ++..+..-....+..+++.|.+. ..+++.|+.+.. ...-+.+.|+++|..+.. +...
T Consensus 150 ---~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~---~~~~ 215 (315)
T PRK09492 150 ---K------GFSSVCYDDEGAIKLLMQRLYDQ--GHRHISYLGVDHSDVTTGKRRHQAYLAFCKQHKLTPVA---ALGG 215 (315)
T ss_pred ---C------CCcEEEECcHHHHHHHHHHHHHc--CCCeEEEEcCCcccchhHHHHHHHHHHHHHHcCCCcee---ecCC
Confidence 1 33222222223345566777654 347899986431 123566888889876532 1111
Q ss_pred cCCCCcHHHHHH-c-CCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHH
Q 023179 214 PVHHVDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 263 (286)
Q Consensus 214 ~~~~~~~~~~~~-~-~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~ 263 (286)
.......+..+. + ..+++|++.+-..+...+..+.+.+..++.++.++..
T Consensus 216 ~~~~~~~~~~~~~l~~~~~ai~~~~D~~A~g~~~al~~~g~~disvig~d~~ 267 (315)
T PRK09492 216 LSMQSGYELVAKVLTPETTALVCATDTLALGASKYLQEQGRDDIQVAGVGNT 267 (315)
T ss_pred CCchHHHHHHHHHhhcCCCEEEEcCcHHHHHHHHHHHHcCCCceEEEeeCch
Confidence 111111112222 1 4689999999888877777776654335666666553
No 131
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=85.49 E-value=6.3 Score=36.96 Aligned_cols=69 Identities=13% Similarity=-0.004 Sum_probs=48.4
Q ss_pred CCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChH
Q 023179 162 ATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 162 ~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~s 238 (286)
.|+.++++.|..+. ..|++++++ |++....-|...|.++|++|..+.-.+. + .++. ..+.|+|+..-+.
T Consensus 213 CTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~----n-l~~~---~r~ADIVIsAvGk 284 (364)
T PLN02616 213 CTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK----N-PEEI---TREADIIISAVGQ 284 (364)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCC----C-HHHH---HhhCCEEEEcCCC
Confidence 57888887776553 378888777 8888888899999999999977654331 1 1122 3577887766543
No 132
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.10 E-value=11 Score=34.11 Aligned_cols=149 Identities=15% Similarity=0.071 Sum_probs=82.8
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH----HHHHHHHc-CCCCcEEEEEChhhHH
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV----FLEAWKEA-GTPNVRIGVVGAGTAS 140 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~----~~~~l~~~-~~~~~~i~aVG~~Ta~ 140 (286)
.+.+++.|++..+.++-+.....+...+.+.++...+++.|.+|-|.--.. +++.+... ..+.....-.|.-
T Consensus 55 ~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I~~aKDVdg~n~~n~G~l--- 131 (283)
T PRK14192 55 GNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRM--- 131 (283)
T ss_pred HHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhccCHHHhcCCCCccccCcc---
Confidence 455677899998887733322112222333343445799999999954332 33333110 1122222223321
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEEcCCC-ChhHHHHHHHhCCCeeEEEEeeeeecCCC
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~~g~~-~~~~L~~~L~~~G~~V~~~~vY~~~~~~~ 217 (286)
+ . |- .-+.| .|..++++.|.... ..|++++++.... ...-+...|.+.|++|..+. +.
T Consensus 132 -~--~------~~-~~~~p--~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~---~~---- 192 (283)
T PRK14192 132 -A--M------GE-AAYGS--ATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICH---SR---- 192 (283)
T ss_pred -c--c------CC-CcccC--CcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEe---CC----
Confidence 0 1 21 11232 45688888776543 3788999986554 66778889999998664443 21
Q ss_pred CcHHHHHHcCCCCEEEEeCh
Q 023179 218 VDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 218 ~~~~~~~~~~~~d~IvftS~ 237 (286)
...+.+.+...|+|+-+.+
T Consensus 193 -t~~L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 193 -TQNLPELVKQADIIVGAVG 211 (283)
T ss_pred -chhHHHHhccCCEEEEccC
Confidence 1123333578999998884
No 133
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.90 E-value=10 Score=34.44 Aligned_cols=152 Identities=21% Similarity=0.140 Sum_probs=80.9
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
.+..++.|+++..+-+-+. ...+++.+.++ .....|.|++--|---..-.+.+.+.-.+...+=.+.+.-.-.|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l 129 (285)
T PRK14191 53 IKACERVGMDSDLHTLQEN---TTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKL 129 (285)
T ss_pred HHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHHH
Confidence 4456677887765433222 12234555443 34678999999883211111111111111122222222222222
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCc
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD 219 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~ 219 (286)
- . |-. .+.| .|+.++++.|..+. ..|++++++ ||+....-+...|..+|++|..+...+
T Consensus 130 ~-~------g~~-~~~P--cTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t-------- 191 (285)
T PRK14191 130 C-S------QLD-GFVP--ATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT-------- 191 (285)
T ss_pred h-c------CCC-CCCC--CcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------
Confidence 1 1 221 2444 57888887776543 378999988 555777788999999999997664322
Q ss_pred HHHHHHcCCCCEEEEeChH
Q 023179 220 QTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 220 ~~~~~~~~~~d~IvftS~s 238 (286)
..+.+...+.|+|+..-+.
T Consensus 192 ~~l~~~~~~ADIvV~AvG~ 210 (285)
T PRK14191 192 KDLSFYTQNADIVCVGVGK 210 (285)
T ss_pred HHHHHHHHhCCEEEEecCC
Confidence 1112223577888776643
No 134
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=84.74 E-value=27 Score=33.31 Aligned_cols=173 Identities=13% Similarity=0.021 Sum_probs=94.5
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCC-cEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKE 123 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~ 123 (286)
.|...++|+++.+.. +...+.|++.|+ ++...+. ..+.+++. +.+.++|.+++.+..-+ +.+++.
T Consensus 6 ~~~~~~~ili~~~~~--~~~~~~l~~~~~~~v~~~~~-----~~~~~~~~---~~~~~~d~l~~~~~~~~~~~~l~~--- 72 (409)
T PRK11790 6 LPKDKIKFLLLEGVH--QSAVEVLRAAGYTNIEYHKG-----ALDEEELI---EAIKDAHFIGIRSRTQLTEEVLAA--- 72 (409)
T ss_pred CCCCCeEEEEECCCC--HHHHHHHHhcCCceEEECCC-----CCCHHHHH---HHcCCCCEEEEeCCCCCCHHHHhh---
Confidence 566678999997543 555677877776 5554321 11223333 34577898877654222 112222
Q ss_pred cCCCCcEEEE-EChhhH----HHHHHhhhccCCCCceeccCCCCCHHHHHHhcc--------------------cC----
Q 023179 124 AGTPNVRIGV-VGAGTA----SIFEEVIQSSKCSLDVAFSPSKATGKILASELP--------------------KN---- 174 (286)
Q Consensus 124 ~~~~~~~i~a-VG~~Ta----~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~--------------------~~---- 174 (286)
.+++++++ .|.++- +++++. |+.+..+|. .+++.+++.-. +|
T Consensus 73 --~~~Lk~I~~~~~G~d~id~~~~~~~------gI~V~n~pg-~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~ 143 (409)
T PRK11790 73 --AEKLVAIGCFCIGTNQVDLDAAAKR------GIPVFNAPF-SNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA 143 (409)
T ss_pred --CCCCeEEEECceecccccHHHHHhC------CCEEEeCCC-CChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc
Confidence 23555542 333332 556667 998877664 33333322110 01
Q ss_pred ----CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCC--cHHHHHHcCCCCEEEEeChHHH
Q 023179 175 ----GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--DQTVLKQALSIPVVAVASPSAV 240 (286)
Q Consensus 175 ----~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~--~~~~~~~~~~~d~IvftS~sav 240 (286)
...|+++.+++-......+.+.++..|.+|.-+..+........ ...+.+.+...|+|.+.-|..-
T Consensus 144 ~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~ 215 (409)
T PRK11790 144 AGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETP 215 (409)
T ss_pred cCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCCh
Confidence 12677888886655566689999999988765544322111100 0011222367899998887654
No 135
>PRK06756 flavodoxin; Provisional
Probab=84.65 E-value=5.4 Score=31.98 Aligned_cols=64 Identities=11% Similarity=0.150 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH--------HHHHHHHHHHHcCCCCcEEEEE
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLEAWKEAGTPNVRIGVV 134 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~--------av~~~~~~l~~~~~~~~~i~aV 134 (286)
..+++.|++.|..+..+.+-+.. . . ..+.++|.|+|-||. .+..|++.+....+.+.++++.
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~---~---~----~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~f 89 (148)
T PRK06756 20 DHIAGVIRETENEIEVIDIMDSP---E---A----SILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVF 89 (148)
T ss_pred HHHHHHHhhcCCeEEEeehhccC---C---H----HHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEE
Confidence 34455566667777655443221 1 1 134679999999865 2566666665445678888888
Q ss_pred Ch
Q 023179 135 GA 136 (286)
Q Consensus 135 G~ 136 (286)
|.
T Consensus 90 gt 91 (148)
T PRK06756 90 GS 91 (148)
T ss_pred eC
Confidence 77
No 136
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=84.63 E-value=28 Score=30.90 Aligned_cols=179 Identities=10% Similarity=-0.030 Sum_probs=86.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCch---HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~---~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
..+.+.++++|.++...+. . .+.+ ...+.+ ....+|+||+.+...-....... .. ...+++.+|....
T Consensus 55 ~gi~~~~~~~g~~~~~~~~---~--~~~~~~~~~i~~l-~~~~vDgiIi~~~~~~~~~~~~~-~~--~~~pvv~~~~~~~ 125 (309)
T PRK11041 55 RGIEVTAAEHGYLVLIGDC---A--HQNQQEKTFVNLI-ITKQIDGMLLLGSRLPFDASKEE-QR--NLPPMVMANEFAP 125 (309)
T ss_pred HHHHHHHHHCCCEEEEEeC---C--CChHHHHHHHHHH-HHcCCCEEEEecCCCChHHHHHH-Hh--cCCCEEEEccccC
Confidence 4556667778887765321 1 1211 122222 13579999998643211111111 11 1235777775421
Q ss_pred HHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 023179 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
.. ++..+..-....+...++.|.+. ..+++.++.+... ..-+.+.+++.|.++....++..
T Consensus 126 ----~~------~~~~V~~Dn~~~g~~a~~~l~~~--G~~~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~ 193 (309)
T PRK11041 126 ----EL------ELPTVHIDNLTAAFEAVNYLHEL--GHKRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARG 193 (309)
T ss_pred ----CC------CCCEEEECcHHHHHHHHHHHHHc--CCceEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEeC
Confidence 11 32222221122344555666554 3468888876543 23345677778876532222221
Q ss_pred ecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
............. + ..+++|++++...+...+..+.+.+. .++.+++++.
T Consensus 194 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~gv~~al~~~g~~ip~di~vvg~D~ 250 (309)
T PRK11041 194 DFTFEAGAKALKQLLDLPQPPTAVFCHSDVMALGALSQAKRMGLRVPQDLSIIGFDD 250 (309)
T ss_pred CCCHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEEeCC
Confidence 1111111122222 2 24899999988877667666665431 2355666554
No 137
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=84.45 E-value=27 Score=31.59 Aligned_cols=138 Identities=12% Similarity=0.013 Sum_probs=75.5
Q ss_pred CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCE
Q 023179 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCT 180 (286)
Q Consensus 101 ~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~r 180 (286)
...+.|+-............+.+ .+++++..+..... +... ...+.+ ..........+++.+.+.. .+|
T Consensus 66 ~~V~~iig~~~s~~~~~~~~~~~---~~ip~v~~~~~~~~-~~~~----~~~~~~-~~~~~~~~~~~~~~l~~~g--~~~ 134 (341)
T cd06341 66 DKVVAVVGGSSGAGGSALPYLAG---AGIPVIGGAGTSAW-ELTS----PNSFPF-SGGTPASLTTWGDFAKDQG--GTR 134 (341)
T ss_pred cCceEEEecccccchhHHHHHhh---cCCceecCCCCCch-hhcC----CCeEEe-cCCCcchhHHHHHHHHHcC--CcE
Confidence 36788887654444333344433 25555555433221 2111 001211 1122334566777776543 456
Q ss_pred EEEEcCCC------ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeChH-HHHHHHHHhcccc
Q 023179 181 VLYPASAK------ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-AVRSWVNLISDTE 251 (286)
Q Consensus 181 vL~~~g~~------~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS~s-av~~~~~~~~~~~ 251 (286)
+.++..+. ....+.+.+++.|+++.....|... ..+....+.++ ..+|+|++.+.. .+-.|+..+.+.+
T Consensus 135 ~~~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~~~~i~~~~pdaV~~~~~~~~a~~~~~~~~~~G 212 (341)
T cd06341 135 AVALVTALSAAVSAAAALLARSLAAAGVSVAGIVVITAT--APDPTPQAQQAAAAGADAIITVLDAAVCASVLKAVRAAG 212 (341)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHcCCccccccccCCC--CCCHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcC
Confidence 66553332 2445778899999988776666553 12222233332 479999999877 7777888877654
No 138
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=84.08 E-value=5.2 Score=33.99 Aligned_cols=58 Identities=24% Similarity=0.288 Sum_probs=39.2
Q ss_pred HHHHHHHhCCCeeEEEEeeeeecCC--------CCcHHHHHHcCCCCEEEEeCh-------HHHHHHHHHhcc
Q 023179 192 EIEEGLSNRGFEVVRLNTYTTEPVH--------HVDQTVLKQALSIPVVAVASP-------SAVRSWVNLISD 249 (286)
Q Consensus 192 ~L~~~L~~~G~~V~~~~vY~~~~~~--------~~~~~~~~~~~~~d~IvftS~-------sav~~~~~~~~~ 249 (286)
.+.+.|.+.|.+++.+.+|+-...+ ....+..+.+...|.|+|.|| ..+|+|++.+..
T Consensus 22 ~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~~ 94 (191)
T PRK10569 22 YAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKASFSGALKTLLDLLPE 94 (191)
T ss_pred HHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCCCCHHHHHHHHhCCh
Confidence 4566777788888888887532210 011123334568999999998 789999998854
No 139
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=83.78 E-value=5.3 Score=32.42 Aligned_cols=88 Identities=22% Similarity=0.368 Sum_probs=57.5
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeChHHHH-----HHHHHhccccCCCceEEE--
Q 023179 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVR-----SWVNLISDTEQWSNSVAC-- 259 (286)
Q Consensus 189 ~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS~sav~-----~~~~~~~~~~~~~~~iv~-- 259 (286)
+...+...|+..||+|+.....++. ++..+++ .+.|+|.+.|-++.. .+.+.+++.+.....+++
T Consensus 28 gakvia~~l~d~GfeVi~~g~~~tp------~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GG 101 (143)
T COG2185 28 GAKVIARALADAGFEVINLGLFQTP------EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGG 101 (143)
T ss_pred chHHHHHHHHhCCceEEecCCcCCH------HHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecC
Confidence 4667889999999999766664442 3444432 689999999877643 233444443332344343
Q ss_pred -eCHHHHHHHHHcCCCeEEeCCCC
Q 023179 260 -IGETTASAAKRLGLKNVYYPTHP 282 (286)
Q Consensus 260 -IG~~Ta~~l~~~G~~~v~~~~~p 282 (286)
|.+-....++++|+..++-|..+
T Consensus 102 vip~~d~~~l~~~G~~~if~pgt~ 125 (143)
T COG2185 102 VIPPGDYQELKEMGVDRIFGPGTP 125 (143)
T ss_pred ccCchhHHHHHHhCcceeeCCCCC
Confidence 33445566999999999888665
No 140
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=83.74 E-value=9.6 Score=35.52 Aligned_cols=68 Identities=15% Similarity=0.087 Sum_probs=48.1
Q ss_pred CCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeCh
Q 023179 162 ATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 162 ~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~ 237 (286)
.|..+.++.|..+. ..|++++++ |++....-|...|.++|++|+.+.-.+. + .++. ..+.|+|+..-+
T Consensus 196 CTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~----n-l~~~---~~~ADIvIsAvG 266 (345)
T PLN02897 196 CTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTK----D-PEQI---TRKADIVIAAAG 266 (345)
T ss_pred CCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCC----C-HHHH---HhhCCEEEEccC
Confidence 57888888887654 378888777 8888888899999999999976665432 1 1222 357787776544
No 141
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.64 E-value=11 Score=34.16 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=87.6
Q ss_pred CeEEEeCCCCchHH----HHHHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeCHHH--HHH--HHH
Q 023179 51 PKVVVTRERGKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPEA--GSV--FLE 119 (286)
Q Consensus 51 ~~VLitR~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~---l~~~~~~d~IvFTS~~a--v~~--~~~ 119 (286)
.-++..-..+.... -.+..++.|+++..+-+-+.. ..+++.+. |+...+.|.|+.--|-- ... .++
T Consensus 41 Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~ 117 (287)
T PRK14176 41 LATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADT---TQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAME 117 (287)
T ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHh
Confidence 33445544444433 345566779887654442221 22334444 44456789999988832 211 122
Q ss_pred HHHH-cCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHH
Q 023179 120 AWKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEE 195 (286)
Q Consensus 120 ~l~~-~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~ 195 (286)
.+.- ...|+..-+-.| .|- . |-. .+.| .|+.++++.|..+. ..|++++++ ||+....-|..
T Consensus 118 ~I~p~KDVDGl~~~N~g-----~l~-~------g~~-~~~P--cTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~ 182 (287)
T PRK14176 118 AIDPAKDADGFHPYNMG-----KLM-I------GDE-GLVP--CTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAA 182 (287)
T ss_pred ccCccccccccChhhhh-----hHh-c------CCC-CCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHH
Confidence 1110 011233222222 111 1 211 2444 57888887776654 378898888 66667778999
Q ss_pred HHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeCh
Q 023179 196 GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~ 237 (286)
.|..+|++|+.+...+. + . .+...+.|+|+...+
T Consensus 183 lL~~~~atVtv~hs~T~----~-l---~~~~~~ADIvv~AvG 216 (287)
T PRK14176 183 MLLNRNATVSVCHVFTD----D-L---KKYTLDADILVVATG 216 (287)
T ss_pred HHHHCCCEEEEEeccCC----C-H---HHHHhhCCEEEEccC
Confidence 99999999977775432 1 1 112357888776433
No 142
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=83.49 E-value=24 Score=31.36 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=29.6
Q ss_pred CCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeC--HHHHHHHHHcCC
Q 023179 227 LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIG--ETTASAAKRLGL 273 (286)
Q Consensus 227 ~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG--~~Ta~~l~~~G~ 273 (286)
..+++|++.+...+...++.+.+.+. .++.++.++ +.+.+++++ |.
T Consensus 184 ~~~~ai~~~~d~~a~ga~~al~~~g~~~~i~vvg~d~~~~~~~~l~~-g~ 232 (302)
T TIGR02637 184 PNLKGIIAPTTVGIKAAAQAVSDAKLIGKVKLTGLGLPSEMAKYVKN-GT 232 (302)
T ss_pred CCccEEEeCCCchHHHHHHHHHhcCCCCCEEEEEcCCcHHHHHHHhc-Cc
Confidence 36889988777776666666654432 246778877 455667765 53
No 143
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=83.45 E-value=4.9 Score=31.37 Aligned_cols=87 Identities=16% Similarity=0.259 Sum_probs=50.0
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEEEEeCh-----HHHHHHHHHhccccCCCceEEEeCH
Q 023179 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASP-----SAVRSWVNLISDTEQWSNSVACIGE 262 (286)
Q Consensus 190 ~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~IvftS~-----sav~~~~~~~~~~~~~~~~iv~IG~ 262 (286)
...+...|+..|++|..+-.. ++. ++..+. ..++|+|++.+. ..++.+++.+++....+.++++-|.
T Consensus 16 ~~~~~~~l~~~G~~vi~lG~~--vp~----e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~ 89 (122)
T cd02071 16 AKVIARALRDAGFEVIYTGLR--QTP----EEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred HHHHHHHHHHCCCEEEECCCC--CCH----HHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 345567788889877555443 222 222222 257888887754 3345555666554322566666642
Q ss_pred H---HHHHHHHcCCCeEEeCCCC
Q 023179 263 T---TASAAKRLGLKNVYYPTHP 282 (286)
Q Consensus 263 ~---Ta~~l~~~G~~~v~~~~~p 282 (286)
. -.+.++++|+..++-+..+
T Consensus 90 ~~~~~~~~~~~~G~d~~~~~~~~ 112 (122)
T cd02071 90 IPPEDYELLKEMGVAEIFGPGTS 112 (122)
T ss_pred CCHHHHHHHHHCCCCEEECCCCC
Confidence 2 2445678999987766554
No 144
>PRK06756 flavodoxin; Provisional
Probab=83.35 E-value=4.8 Score=32.29 Aligned_cols=77 Identities=8% Similarity=0.072 Sum_probs=41.4
Q ss_pred HHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChH--------HHHHHHHHhccccCCCceEEEeCH-
Q 023179 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS--------AVRSWVNLISDTEQWSNSVACIGE- 262 (286)
Q Consensus 192 ~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~s--------av~~~~~~~~~~~~~~~~iv~IG~- 262 (286)
.+.+.|++.|..|+...+.+.. . ...+..+|.|+|-||. .+..|++.+......+.+++++|-
T Consensus 21 ~ia~~l~~~g~~v~~~~~~~~~---~-----~~~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~~~~l~~k~~~~fgt~ 92 (148)
T PRK06756 21 HIAGVIRETENEIEVIDIMDSP---E-----ASILEQYDGIILGAYTWGDGDLPDDFLDFYDAMDSIDLTGKKAAVFGSC 92 (148)
T ss_pred HHHHHHhhcCCeEEEeehhccC---C-----HHHHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHhcCCCCCCEEEEEeCC
Confidence 3455666677766555443321 1 1124577888887654 366666655433233455655544
Q ss_pred ------------HHHHHHHHcCCCeE
Q 023179 263 ------------TTASAAKRLGLKNV 276 (286)
Q Consensus 263 ------------~Ta~~l~~~G~~~v 276 (286)
...+.+++.|++.+
T Consensus 93 ~~~y~~~~~a~~~l~~~l~~~g~~~v 118 (148)
T PRK06756 93 DSAYPKYGVAVDILIEKLQERGAAVV 118 (148)
T ss_pred CCchHHHHHHHHHHHHHHHHCCCEEc
Confidence 23445666776653
No 145
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=82.65 E-value=3.2 Score=33.26 Aligned_cols=57 Identities=19% Similarity=0.295 Sum_probs=40.4
Q ss_pred hHHHHHHHhCCCeeEEEEeeeeecC-------------CCCcHHHHHHcCCCCEEEEeCh-------HHHHHHHHHhc
Q 023179 191 NEIEEGLSNRGFEVVRLNTYTTEPV-------------HHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLIS 248 (286)
Q Consensus 191 ~~L~~~L~~~G~~V~~~~vY~~~~~-------------~~~~~~~~~~~~~~d~IvftS~-------sav~~~~~~~~ 248 (286)
+.+.+.|++.|++++.+.+.+. +. ++..+++.+.+...|.|+|.|| ..+++|++.+.
T Consensus 21 ~~~~~~l~~~g~e~~~i~l~~~-~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~ 97 (152)
T PF03358_consen 21 EAVAEQLEEAGAEVEVIDLADY-PLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLS 97 (152)
T ss_dssp HHHHHHHHHTTEEEEEEECTTS-HCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHH
T ss_pred HHHHHHHHHcCCEEEEEecccc-chhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHHHHhc
Confidence 3566778788888888877765 21 1222334444578999999996 78999999986
No 146
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional
Probab=82.65 E-value=36 Score=30.63 Aligned_cols=170 Identities=11% Similarity=-0.047 Sum_probs=87.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (286)
.+.+.++++|+++..+. .. +.+ . .....|.||+++...-. ..+.+.+. +.+++.++....
T Consensus 88 ~i~~~~~~~g~~~~~~~----~~--~~~-----~-~~~~vDgiI~~~~~~~~-~~~~l~~~---~~pvV~~~~~~~---- 147 (327)
T PRK10339 88 GIETQCEKLGIELTNCY----EH--SGL-----P-DIKNVTGILIVGKPTPA-LRAAASAL---TDNICFIDFHEP---- 147 (327)
T ss_pred HHHHHHHHCCCEEEEee----cc--ccc-----c-ccccCCEEEEeCCCCHH-HHHHHHhc---CCCEEEEeCCCC----
Confidence 34456778898876431 11 111 1 24678999998753322 33444432 567888875421
Q ss_pred HhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecCC
Q 023179 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (286)
Q Consensus 144 ~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~~ 216 (286)
.. ++..+..-....+..+++.|.+. ..+++.|+.+... ..-+.+.++..|. +....+|......
T Consensus 148 ~~------~~~~V~~D~~~~~~~a~~~l~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~g~-~~~~~~~~~~~~~ 218 (327)
T PRK10339 148 GS------GYDAVDIDLARISKEIIDFYINQ--GVNRIGFIGGEDEPGKADIREVAFAEYGRLKQV-VREEDIWRGGFSS 218 (327)
T ss_pred CC------CCCEEEECHHHHHHHHHHHHHHC--CCCeEEEeCCccccchhhHHHHHHHHHHHHcCC-CChhheeecCcCh
Confidence 11 22222221222345566666654 3468999976532 1233456666775 2221233321111
Q ss_pred CCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 217 HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 217 ~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
....+..+. + ..+++|++++-..+..++..+.+.+. .++.++.++.
T Consensus 219 ~~~~~~~~~~l~~~~~~~ai~~~~D~~A~g~~~al~~~g~~vP~di~vigfD~ 271 (327)
T PRK10339 219 SSGYELAKQMLAREDYPKALFVASDSIAIGVLRAIHERGLNIPQDISLISVND 271 (327)
T ss_pred hHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeeCC
Confidence 111122222 2 34799999998888778777776432 2455666543
No 147
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=82.23 E-value=17 Score=34.46 Aligned_cols=163 Identities=9% Similarity=0.046 Sum_probs=90.3
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcE
Q 023179 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 130 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~ 130 (286)
|+|++....+ ...+.|.+. +++..+|-... . . + .+.++|.++..|..-+..- +.. ..++|
T Consensus 1 mkIl~d~~~~---~~~~~~~~~-~ev~~~~~~~~----~-~---~---~l~daD~liv~s~t~v~~~---ll~--~~~Lk 60 (378)
T PRK15438 1 MKILVDENMP---YARELFSRL-GEVKAVPGRPI----P-V---A---QLADADALMVRSVTKVNES---LLA--GKPIK 60 (378)
T ss_pred CEEEEeCCcc---hHHHHHhhc-CcEEEeCCCCC----C-H---H---HhCCCcEEEEcCCCCCCHH---Hhc--CCCCe
Confidence 5788885433 333455444 47766553211 1 1 1 2467899988776444321 211 13555
Q ss_pred EE-EEChhh----HHHHHHhhhccCCCCceeccCCCCCHHHHHHhc-------cc---CCCCCCEEEEEcCCCChhHHHH
Q 023179 131 IG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL-------PK---NGKKKCTVLYPASAKASNEIEE 195 (286)
Q Consensus 131 i~-aVG~~T----a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L-------~~---~~~~~~rvL~~~g~~~~~~L~~ 195 (286)
++ ..|-++ .+++++. |+.+...|. .++..+++.. .+ ....|++|.+++-......+.+
T Consensus 61 ~I~~~~~G~D~iD~~~~~~~------gI~v~napg-~na~aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~ 133 (378)
T PRK15438 61 FVGTATAGTDHVDEAWLKQA------GIGFSAAPG-CNAIAVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQA 133 (378)
T ss_pred EEEECcccccccCHHHHHHC------CCEEEECCC-cCchHHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHH
Confidence 43 333333 2567777 998877653 4444444332 11 1237889999976666667899
Q ss_pred HHHhCCCeeEEEEeeeeecCCC-CcHHHHHHcCCCCEEEEeChHHH
Q 023179 196 GLSNRGFEVVRLNTYTTEPVHH-VDQTVLKQALSIPVVAVASPSAV 240 (286)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~-~~~~~~~~~~~~d~IvftS~sav 240 (286)
.|+..|++|..+.-+....... ....+-+-+...|+|++..|.+-
T Consensus 134 ~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~ 179 (378)
T PRK15438 134 RLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFK 179 (378)
T ss_pred HHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCC
Confidence 9999999886554332211111 01111112357999999888543
No 148
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=82.13 E-value=7.6 Score=32.13 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=22.6
Q ss_pred HHHHcCCCCEEEEeCh-------HHHHHHHHHhcc
Q 023179 222 VLKQALSIPVVAVASP-------SAVRSWVNLISD 249 (286)
Q Consensus 222 ~~~~~~~~d~IvftS~-------sav~~~~~~~~~ 249 (286)
+.+.+...|.|+|.|| ..+++|++.+..
T Consensus 59 l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~ 93 (171)
T TIGR03567 59 ATAQVAQADGVVVATPVYKASYSGVLKALLDLLPQ 93 (171)
T ss_pred HHHHHHHCCEEEEECCcccCCCCHHHHHHHHhCCh
Confidence 3444578999999998 789999998864
No 149
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.89 E-value=11 Score=34.39 Aligned_cols=153 Identities=10% Similarity=-0.004 Sum_probs=81.6
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
.+..++.|+++..+-+-+. ...+++.+.+ +.....|.|++--|---..--+.+.+.-.....+=.+.+.-...|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~---~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l 130 (294)
T PRK14187 54 QRKAEMLGLRSETILLPST---ISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRL 130 (294)
T ss_pred HHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHHHH
Confidence 4556677988765444222 1223444444 345678899998883211101111111111112222222222212
Q ss_pred HHhhhccCCCCc-eeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCC
Q 023179 143 EEVIQSSKCSLD-VAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV 218 (286)
Q Consensus 143 ~~~~~~~~~G~~-~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~ 218 (286)
- . |-. ..+.| .|+.++++.|..+. ..|++++++ ||+....-|...|.++|++|+.+.-++. +
T Consensus 131 ~-~------g~~~~~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~----~- 196 (294)
T PRK14187 131 F-T------GQKKNCLIP--CTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATR----D- 196 (294)
T ss_pred h-C------CCCCCCccC--cCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCC----C-
Confidence 1 1 211 22444 57888877776543 378888777 8888888899999999999986665432 1
Q ss_pred cHHHHHHcCCCCEEEEeChH
Q 023179 219 DQTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 219 ~~~~~~~~~~~d~IvftS~s 238 (286)
..+. ..+.|+|+..-+.
T Consensus 197 l~~~---~~~ADIvVsAvGk 213 (294)
T PRK14187 197 LADY---CSKADILVAAVGI 213 (294)
T ss_pred HHHH---HhhCCEEEEccCC
Confidence 1111 3467777765543
No 150
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=81.28 E-value=52 Score=31.47 Aligned_cols=139 Identities=12% Similarity=0.103 Sum_probs=79.8
Q ss_pred chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cCCCCcEE-EEECh-h
Q 023179 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRI-GVVGA-G 137 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~-~~~~~~~i-~aVG~-~ 137 (286)
+-.++.+.|++.|+++..++... ...++ +.+..+...-+..++.....+.+.+++ .+.+-+.+ +-+|. .
T Consensus 180 d~~ei~~lL~~~Gi~v~~~~~~~----~~~~e----i~~~~~A~lniv~~~~~g~~~a~~Lee~~GiP~~~~~~P~G~~~ 251 (426)
T cd01972 180 DVDEFKRLLNELGLRVNAIIAGG----CSVEE----LERASEAAANVTLCLDLGYYLGAALEQRFGVPEIKAPQPYGIEA 251 (426)
T ss_pred cHHHHHHHHHHcCCeEEEEeCCC----CCHHH----HHhcccCCEEEEEChhHHHHHHHHHHHHhCCCeEecCCccCHHH
Confidence 45789999999999998653321 12232 335666777777777655556666654 44443332 22554 5
Q ss_pred hHHHHHHhhhccCCCCceeccCCC--CCHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCC-CeeEEEEee
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRG-FEVVRLNTY 210 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~--~~~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~L~~~G-~~V~~~~vY 210 (286)
|.+.|++..+.- |.... .++. ..-+.+.+.|... ...|+|+++..+....-.+...|.+.| ..|..+.+.
T Consensus 252 T~~~l~~ia~~~--g~~~~-~e~~i~~e~~~~~~~l~~~~~~l~Gk~~~i~~~~~~~~~~~~~l~elG~~~v~~~~~~ 326 (426)
T cd01972 252 TDKWLREIAKVL--GMEAE-AEAVIEREHERVAPEIEELRKALKGKKAIVETGAAYGHLLIAVLRELGFGEVPVVLVF 326 (426)
T ss_pred HHHHHHHHHHHh--CCcHH-HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCccHHHHHHHHHHcCCceEEEEEec
Confidence 666766652111 43210 1100 0011122222221 126889988888877888899999999 888766553
No 151
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=81.22 E-value=11 Score=33.01 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=37.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
..+.+.+++.|+++..+... .+....+.+...+ ....|.||+.+.. .....++.+.+ .++++++++..
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~--~~~~~~~~i~~~~--~~~~dgiii~~~~~~~~~~~~~~~~~---~~iPvV~~~~~ 88 (289)
T cd01540 19 KFAKKAAKEKGFTVVKIDVP--DGEKVLSAIDNLG--AQGAKGFVICVPDVKLGPAIVAKAKA---YNMKVVAVDDR 88 (289)
T ss_pred HHHHHHHHHcCCEEEEccCC--CHHHHHHHHHHHH--HcCCCEEEEccCchhhhHHHHHHHHh---CCCeEEEecCC
Confidence 34567777899887754332 1100111222222 3568999998754 23444444443 47888888754
No 152
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=80.73 E-value=25 Score=30.43 Aligned_cols=175 Identities=11% Similarity=0.045 Sum_probs=88.5
Q ss_pred HHHHHHHHh-CCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 63 GKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 63 ~~l~~~L~~-~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
..+.+.+++ .|..+..... . + .+..+.+ .-...|+||+++.+. . ..+.+.+ .+.+++.++.....
T Consensus 18 ~gi~~~~~~~~g~~~~~~~~---~---~-~~~~~~l-~~~~vdGiI~~~~~~-~-~~~~l~~---~~~PvV~~~~~~~~- 83 (265)
T cd01543 18 RGIARYAREHGPWSIYLEPR---G---L-QEPLRWL-KDWQGDGIIARIDDP-E-MAEALQK---LGIPVVDVSGSREK- 83 (265)
T ss_pred HHHHHHHHhcCCeEEEEecc---c---c-hhhhhhc-cccccceEEEECCCH-H-HHHHHhh---CCCCEEEEeCccCC-
Confidence 344566667 6777655321 1 1 2222233 235789999975321 2 2233332 36788888865311
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeecC
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (286)
. ++..+..-....+..+++.|.+. ..++++++.+... ..-+.+.+++.|..+..+..+.....
T Consensus 84 ---~------~~~~v~~d~~~~g~~~~~~l~~~--g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~ 152 (265)
T cd01543 84 ---P------GIPRVTTDNAAIGRMAAEHFLER--GFRHFAFYGLPGARWSDEREEAFRQLVAEAGYECSFFYRGLSTDA 152 (265)
T ss_pred ---C------CCCEEeeCHHHHHHHHHHHHHHC--CCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCccccccCcccccc
Confidence 1 22211111112344455556554 3478998876543 23456778888876522211111100
Q ss_pred C--CCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 216 H--HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 216 ~--~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
. ....+..++ + ..+++|+++|...+..++..+.+.+. .++.+++++.
T Consensus 153 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~vigfd~ 208 (265)
T cd01543 153 QSWEEEQEELAQWLQSLPKPVGIFACTDARARQLLEACRRAGIAVPEEVAVLGVDN 208 (265)
T ss_pred ccHHHHHHHHHHHHhcCCCCcEEEecChHHHHHHHHHHHHhCCCCCCceEEEeeCC
Confidence 0 111122222 2 35899999998888877777765432 2455555553
No 153
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.64 E-value=15 Score=33.31 Aligned_cols=147 Identities=19% Similarity=0.125 Sum_probs=81.9
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeCHH--HHHH--HHHHHHH-cCCCCcEEEEEChh
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPE--AGSV--FLEAWKE-AGTPNVRIGVVGAG 137 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~~~~~d~IvFTS~~--av~~--~~~~l~~-~~~~~~~i~aVG~~ 137 (286)
.+..++.|+++..+-+-+. ...+++.+.++ .....|.|++--|- .... .++.+.. ...|+..-.-.|.
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~---~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~- 127 (282)
T PRK14166 52 AKACEECGIKSLVYHLNEN---TTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGY- 127 (282)
T ss_pred HHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHH-
Confidence 4456677888765544222 12234444443 34678999998873 2221 2222111 0113333222221
Q ss_pred hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
.+ . |....+.| .|+.+.++.|..+. ..|++++++ ||.....-|...|.++|++|+.+.-++.
T Consensus 128 ---l~--~------g~~~~~~P--cTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~-- 192 (282)
T PRK14166 128 ---LN--L------GLESGFLP--CTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTK-- 192 (282)
T ss_pred ---Hh--c------CCCCCCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC--
Confidence 11 1 32222444 57888887776653 378888887 8888888899999999999987765442
Q ss_pred CCCCcHHHHHHcCCCCEEEEeCh
Q 023179 215 VHHVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 215 ~~~~~~~~~~~~~~~d~IvftS~ 237 (286)
+ .++ ...+.|+|+..-+
T Consensus 193 --n-l~~---~~~~ADIvIsAvG 209 (282)
T PRK14166 193 --D-LSL---YTRQADLIIVAAG 209 (282)
T ss_pred --C-HHH---HHhhCCEEEEcCC
Confidence 1 111 1246777766544
No 154
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=80.51 E-value=20 Score=32.07 Aligned_cols=174 Identities=11% Similarity=0.083 Sum_probs=88.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
..+.+.+.++|+++..++.. ..++. .+....+ .....|++|+.+..... .+.+... ..+++++|...
T Consensus 79 ~~i~~~~~~~gy~~~i~~~~---~~~~~~~~~~~~l-~~~~vdGvIi~~~~~~~--~~~l~~~---~~p~V~i~~~~--- 146 (311)
T TIGR02405 79 SGMLPVFYTAGYDPIIMESQ---FSPQLTNEHLSVL-QKRNVDGVILFGFTGCD--EEILESW---NHKAVVIARDT--- 146 (311)
T ss_pred HHHHHHHHHCCCeEEEecCC---CChHHHHHHHHHH-HhcCCCEEEEeCCCCCC--HHHHHhc---CCCEEEEecCC---
Confidence 35566677889987655321 11111 1222223 23568999987632111 0122222 35688888531
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCC-C-------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~-~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
. ++..+..-....+..+.+.|.+. ..+++.|+.+.. . ..-+.+.+++.|++.. ..+..
T Consensus 147 ---~------~~~~V~~D~~~~~~~a~~~L~~~--Ghr~I~~i~~~~~~~~~~~~R~~gf~~a~~~~gi~~~--~~~~~- 212 (311)
T TIGR02405 147 ---G------GFSSVCYDDYGAIELLMANLYQQ--GHRHISFLGVDPSDKTTGLMRHNAYLAYCESANLEPI--YQTGQ- 212 (311)
T ss_pred ---C------CccEEEeCcHHHHHHHHHHHHHc--CCCcEEEEccCcccchhHHHHHHHHHHHHHHcCCCce--eeeCC-
Confidence 1 22211111122345566677664 347899997532 1 2346788888887631 11111
Q ss_pred cCCCCcHHHHHH-c-CCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCH
Q 023179 214 PVHHVDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE 262 (286)
Q Consensus 214 ~~~~~~~~~~~~-~-~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~ 262 (286)
.......+..+. + ..+++|++.+-..+-..+..+.+.+..++.++.++.
T Consensus 213 ~~~~~~~~~~~~~l~~~~tAi~~~~D~~A~g~~~~l~~~g~~dvsvvgfd~ 263 (311)
T TIGR02405 213 LSHESGYVLTDKVLKPETTALVCATDTLALGAAKYLQELDRSDVQVSSVGN 263 (311)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHHHHHHcCCCCeEEEeeCC
Confidence 100111112222 1 358999999988888777777664433445555543
No 155
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=80.44 E-value=57 Score=31.42 Aligned_cols=175 Identities=13% Similarity=0.071 Sum_probs=92.8
Q ss_pred CCCCCCCCccccccc-------cccccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEece--EEeeeCCCchHHH
Q 023179 25 NRPLPFQFSRIQASS-------DATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPL--IQHAQGPDTDRLS 94 (286)
Q Consensus 25 ~~~~~~~~~~~~~~~-------~~~~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~--~~~~~~~~~~~l~ 94 (286)
...+|.++.|.+... ..-+.++|+.|.+|.++-+-. +...|.+.|.+.|++|...-. +.++ +..-
T Consensus 16 ~~~g~~~i~w~~~~mp~l~~~~~~~~~~~pl~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~np~Stq-----d~va 90 (425)
T PRK05476 16 ADWGRKEIEWAETEMPGLMAIREEFAAEKPLKGARIAGCLHMTIQTAVLIETLKALGAEVRWASCNPFSTQ-----DDVA 90 (425)
T ss_pred hhhhhHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEeccccHHHHHHHHHHcCCEEEEEeCCCcccC-----HHHH
Confidence 445667777776322 123456999999999997754 678999999999999865432 3332 2333
Q ss_pred HHHhcCCCccEEEEeC-HHHHHHHHHHHHHc----CC--------------------CCcEEE-EEChhhHH--HHHHhh
Q 023179 95 SVLNADTIFDWIIITS-PEAGSVFLEAWKEA----GT--------------------PNVRIG-VVGAGTAS--IFEEVI 146 (286)
Q Consensus 95 ~~l~~~~~~d~IvFTS-~~av~~~~~~l~~~----~~--------------------~~~~i~-aVG~~Ta~--~L~~~~ 146 (286)
.+|.. ..+ =||.- -...+.+...+.+. .. -..++. ++-+.|.- -|++..
T Consensus 91 aaL~~-~gi--~v~a~~~~~~~ey~~~~~~~l~~~~p~iiiDdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~ 167 (425)
T PRK05476 91 AALAA-AGI--PVFAWKGETLEEYWECIERALDGHGPNMILDDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMA 167 (425)
T ss_pred HHHHH-CCc--eEEecCCCCHHHHHHHHHHHhcCCCCCEEEecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHH
Confidence 44422 111 12221 11111111111110 00 012333 33333332 222221
Q ss_pred hccCCCCceeccCC---C-------CCHHHHHHhcccC---CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 023179 147 QSSKCSLDVAFSPS---K-------ATGKILASELPKN---GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (286)
Q Consensus 147 ~~~~~G~~~~~~~~---~-------~~~e~L~~~L~~~---~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~ 207 (286)
+.++-++.+..++. + .+.++.+..|... ...|++++++........+...|+..|++|..+
T Consensus 168 ~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~ 241 (425)
T PRK05476 168 KDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVT 241 (425)
T ss_pred HcCCCCCCEEecCCcccCccccccHHHHhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 22223565544332 1 2456666555433 237889999987777777889999999865443
No 156
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.38 E-value=16 Score=33.26 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=82.5
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH--HH--HHHHHHHH-cCCCCcEEEEEChh
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--GS--VFLEAWKE-AGTPNVRIGVVGAG 137 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~a--v~--~~~~~l~~-~~~~~~~i~aVG~~ 137 (286)
.+..++.|+++..+-+-+. .+.+++.+.+ +...+.|.|++--|-- .. ..++.+.- ...|+..-.-.|.-
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~---~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~l 130 (286)
T PRK14175 54 KKAAEKIGMISEIVHLEET---ATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKL 130 (286)
T ss_pred HHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCCccchHhH
Confidence 4456677888765444222 1223444444 3456789999988732 22 12222211 01133332222221
Q ss_pred hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEEcC-CCChhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPAS-AKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~~g-~~~~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
. . |- ..+.| .|+.++++.|.... ..|++++++.. .....-+...|..+|++|..+.-++
T Consensus 131 ~------~------~~-~~~~P--cTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--- 192 (286)
T PRK14175 131 Y------I------DE-QTFVP--CTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--- 192 (286)
T ss_pred h------c------CC-CCCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---
Confidence 1 1 21 12343 47888887776653 37899999955 5477789999999999987666432
Q ss_pred CCCCcHHHHHHcCCCCEEEEeChHH
Q 023179 215 VHHVDQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 215 ~~~~~~~~~~~~~~~d~IvftS~sa 239 (286)
..+.+.....|+|+.+-+..
T Consensus 193 -----~~l~~~~~~ADIVIsAvg~p 212 (286)
T PRK14175 193 -----KDMASYLKDADVIVSAVGKP 212 (286)
T ss_pred -----hhHHHHHhhCCEEEECCCCC
Confidence 11222346888888777653
No 157
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.25 E-value=15 Score=33.36 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=83.4
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeCHH--HHHH--HHHHHHH-cCCCCcEEEEECh
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPE--AGSV--FLEAWKE-AGTPNVRIGVVGA 136 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~~~~~d~IvFTS~~--av~~--~~~~l~~-~~~~~~~i~aVG~ 136 (286)
-.+.+++.|+++..+-+-+.. ..+++.+.++ ...+.|.|++--|- ..+. +++.+.- ...|+..-.-.|.
T Consensus 53 k~k~~~~~Gi~~~~~~l~~~~---~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 129 (285)
T PRK14189 53 KVKACEDNGFHSLKDRYPADL---SEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGA 129 (285)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhhH
Confidence 345566779887655442221 2234444443 44678899998873 2221 2222211 0113333333331
Q ss_pred hhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeee
Q 023179 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
|- . |-. .+.| .|+.+.++.|..+. ..|++++++ ||.....-|...|...|++|..+...+
T Consensus 130 -----l~-~------~~~-~~~P--cTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t-- 192 (285)
T PRK14189 130 -----LM-T------GQP-LFRP--CTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT-- 192 (285)
T ss_pred -----hh-C------CCC-CCcC--CCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC--
Confidence 11 1 211 2444 57888887776654 378898888 666657789999999999997764321
Q ss_pred cCCCCcHHHHHHcCCCCEEEEeChH
Q 023179 214 PVHHVDQTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~IvftS~s 238 (286)
++ +.....+.|+|+...+.
T Consensus 193 --~~----l~~~~~~ADIVV~avG~ 211 (285)
T PRK14189 193 --RD----LAAHTRQADIVVAAVGK 211 (285)
T ss_pred --CC----HHHHhhhCCEEEEcCCC
Confidence 11 11224688998888773
No 158
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=80.11 E-value=5 Score=30.91 Aligned_cols=84 Identities=14% Similarity=0.272 Sum_probs=49.5
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEEEEeCh-----HHHHHHHHHhccccCCCceEEEeC
Q 023179 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASP-----SAVRSWVNLISDTEQWSNSVACIG 261 (286)
Q Consensus 189 ~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~IvftS~-----sav~~~~~~~~~~~~~~~~iv~IG 261 (286)
+...+...|+..|++|..+-. ..+ .+++.+. ..++|+|.+++. ..++.+.+.+++....+.++++-|
T Consensus 15 G~~~~~~~l~~~G~~V~~lg~--~~~----~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG 88 (119)
T cd02067 15 GKNIVARALRDAGFEVIDLGV--DVP----PEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred HHHHHHHHHHHCCCEEEECCC--CCC----HHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 344677889999988843331 122 2233332 258898888775 334555555554421256677777
Q ss_pred HHHHH---HHHHcCCCeEEe
Q 023179 262 ETTAS---AAKRLGLKNVYY 278 (286)
Q Consensus 262 ~~Ta~---~l~~~G~~~v~~ 278 (286)
..... .+++.|+..++.
T Consensus 89 ~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 89 AIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred CCCChhHHHHHHcCCeEEEC
Confidence 65554 678889865543
No 159
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.93 E-value=18 Score=32.79 Aligned_cols=146 Identities=18% Similarity=0.157 Sum_probs=81.8
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHH--HHH--HHHHHHHH-cCCCCcEEEEECh
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AGS--VFLEAWKE-AGTPNVRIGVVGA 136 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~--av~--~~~~~l~~-~~~~~~~i~aVG~ 136 (286)
-.+..++.|+++..+-+-... ..+++.+.+ +...+.|.|++--|- ... ..++.+.- ...|+..-+-.|
T Consensus 54 k~k~a~~~Gi~~~~~~l~~~~---s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g- 129 (285)
T PRK10792 54 KRKACEEVGFVSRSYDLPETT---SEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVG- 129 (285)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccCccChhhHh-
Confidence 345566779887655442221 223444444 344678999998883 221 11221110 011333333333
Q ss_pred hhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeee
Q 023179 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
.|. . |-. .+.| .|+.++++.|.... ..|++++++ ||+....-|...|..+|++|..+.-.+
T Consensus 130 ----~l~-~------~~~-~~~P--cTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T-- 193 (285)
T PRK10792 130 ----RLA-Q------RIP-LLRP--CTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT-- 193 (285)
T ss_pred ----HHh-C------CCC-CCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC--
Confidence 111 1 211 2344 57888887776654 368898888 666677789999999999997765432
Q ss_pred cCCCCcHHHHHHcCCCCEEEEeC
Q 023179 214 PVHHVDQTVLKQALSIPVVAVAS 236 (286)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~IvftS 236 (286)
++ +.+...+.|+|+.+-
T Consensus 194 --~~----l~~~~~~ADIvi~av 210 (285)
T PRK10792 194 --KN----LRHHVRNADLLVVAV 210 (285)
T ss_pred --CC----HHHHHhhCCEEEEcC
Confidence 11 122246889988887
No 160
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.90 E-value=17 Score=32.95 Aligned_cols=147 Identities=18% Similarity=0.112 Sum_probs=81.8
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH--HH--HHHHHHHH-cCCCCcEEEEEChh
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--GS--VFLEAWKE-AGTPNVRIGVVGAG 137 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~a--v~--~~~~~l~~-~~~~~~~i~aVG~~ 137 (286)
.+..++.|+++..+-+-+. .+.+++.+.+ +.....|.|++--|-- .. ..++.+.. ...|+..-+-.|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~---~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g-- 127 (281)
T PRK14183 53 AKACDRVGIYSITHEMPST---ISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVG-- 127 (281)
T ss_pred HHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCchhcccccChhhhh--
Confidence 4456677888765433222 1223444444 3456789999998842 22 11222111 012333333333
Q ss_pred hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
.|- . |- ..+.| .|+.+.++.|..+. ..|++++++ ||+....-|...|.++|++|+.+.-++
T Consensus 128 ---~l~-~------g~-~~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--- 191 (281)
T PRK14183 128 ---RLV-T------GL-DGFVP--CTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT--- 191 (281)
T ss_pred ---HHh-c------CC-CCCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---
Confidence 111 1 31 22444 57888887776653 378898888 677778889999999999997554332
Q ss_pred CCCCcHHHHHHcCCCCEEEEeChH
Q 023179 215 VHHVDQTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 215 ~~~~~~~~~~~~~~~d~IvftS~s 238 (286)
++ ..+ ...+.|+|+..-+.
T Consensus 192 -~~-l~~---~~~~ADIvV~AvGk 210 (281)
T PRK14183 192 -KD-LKA---HTKKADIVIVGVGK 210 (281)
T ss_pred -cC-HHH---HHhhCCEEEEecCc
Confidence 11 111 23577887776644
No 161
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.85 E-value=24 Score=32.08 Aligned_cols=152 Identities=17% Similarity=0.101 Sum_probs=82.3
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
-.+..++.|+++..+-+-+.. ..+++.+.+ +...+.|.|++--|---..-.+.+.+.-.....+=.+.+.-...
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 129 (284)
T PRK14190 53 KKKAAEKVGIYSELYEFPADI---TEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGR 129 (284)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccCHhhHHH
Confidence 345566778887654443221 223444444 34467889998877321111111111111122222222222222
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCC
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV 218 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~ 218 (286)
|- . |-. .+.| .|+.+.++.|..+. ..|++++++ ||.....-|...|..+|++|+.+.-++.
T Consensus 130 l~-~------~~~-~~~P--cTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~------ 193 (284)
T PRK14190 130 MM-L------GQD-TFLP--CTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTK------ 193 (284)
T ss_pred Hh-c------CCC-CCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCch------
Confidence 21 1 221 2444 57888887776653 378888887 8888888899999999999987654321
Q ss_pred cHHHHHHcCCCCEEEEeCh
Q 023179 219 DQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 219 ~~~~~~~~~~~d~IvftS~ 237 (286)
.+.+...+.|+|+..-+
T Consensus 194 --~l~~~~~~ADIvI~AvG 210 (284)
T PRK14190 194 --NLAELTKQADILIVAVG 210 (284)
T ss_pred --hHHHHHHhCCEEEEecC
Confidence 11122357788776553
No 162
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=79.76 E-value=50 Score=30.53 Aligned_cols=170 Identities=9% Similarity=0.084 Sum_probs=89.6
Q ss_pred CeEEEeCCCCch-HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC--HHHHHHHHHHHHHcCCC
Q 023179 51 PKVVVTRERGKN-GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS--PEAGSVFLEAWKEAGTP 127 (286)
Q Consensus 51 ~~VLitR~~~~~-~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS--~~av~~~~~~l~~~~~~ 127 (286)
++|++.-.++.. ....+.++++|+++...+. +.+ +++ ++.+..+|.|++.. +-.-+ +++.+...
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~----~~~--~~~---~~~~~~~d~ii~~~~~~~~~~-~l~~~~~~--- 68 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKE----LLS--SAT---VDQLKDYDGVTTMQFGKLEND-VYPKLESY--- 68 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCC----CCC--HHH---HHHhCCCCEEEEecCCCCCHH-HHHhhhhc---
Confidence 678887666544 4444566777766655432 222 222 23457789887643 33323 34444322
Q ss_pred CcEEE-EEChhhH----HHHHHhhhccCCCCceeccCCCCCHHHHHHhc------------------cc----C------
Q 023179 128 NVRIG-VVGAGTA----SIFEEVIQSSKCSLDVAFSPSKATGKILASEL------------------PK----N------ 174 (286)
Q Consensus 128 ~~~i~-aVG~~Ta----~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L------------------~~----~------ 174 (286)
++|++ +.|.+.- +++++. |+.+..+|. .+++.+++.- .+ +
T Consensus 69 ~Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~~~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~ 141 (330)
T PRK12480 69 GIKQIAQRTAGFDMYDLDLAKKH------NIVISNVPS-YSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMS 141 (330)
T ss_pred CceEEEecccccchhhHHHHHHC------CCEEEeCCC-CChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCc
Confidence 34443 3333332 344556 888877654 3333332211 00 1
Q ss_pred -CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCC--cHHHHHHcCCCCEEEEeChHHH
Q 023179 175 -GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--DQTVLKQALSIPVVAVASPSAV 240 (286)
Q Consensus 175 -~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~--~~~~~~~~~~~d~IvftS~sav 240 (286)
...|++|.+++...-...+...|...|.+|.-+..+........ .....+.+...|+|++.-|..-
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~ 210 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANK 210 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcH
Confidence 12566888886666566789999999987755443322111100 0011122468899998888765
No 163
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.47 E-value=13 Score=33.72 Aligned_cols=149 Identities=21% Similarity=0.116 Sum_probs=83.9
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeCHH--HHH--HHHHHHHH-cCCCCcEEEEEChh
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPE--AGS--VFLEAWKE-AGTPNVRIGVVGAG 137 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~~~~~d~IvFTS~~--av~--~~~~~l~~-~~~~~~~i~aVG~~ 137 (286)
.+..++.|+++..+-+ ......+++.+.++ .....|.|+.--|- ... ..++.+.- ...|+..-.-.|.-
T Consensus 54 ~k~a~~~Gi~~~~~~l---~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l 130 (288)
T PRK14171 54 IKNAHKIGIDTLLVNL---STTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYL 130 (288)
T ss_pred HHHHHHcCCEEEEEEC---CCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhh
Confidence 4556677987764433 22222234544443 44678999998883 222 12222211 01234433322221
Q ss_pred hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
- . |-...+.| .|+.++++.|..+. ..|++++++ ||+....-|...|.++|++|+.+.-++.
T Consensus 131 -----~-~------g~~~~~~P--cTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~-- 194 (288)
T PRK14171 131 -----H-S------GISQGFIP--CTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTH-- 194 (288)
T ss_pred -----h-c------CCCCCCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC--
Confidence 1 1 32122444 57888887776553 378888877 8888888899999999999976664331
Q ss_pred CCCCcHHHHHHcCCCCEEEEeChHH
Q 023179 215 VHHVDQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 215 ~~~~~~~~~~~~~~~d~IvftS~sa 239 (286)
+ ..+ ...+.|+|+..-+..
T Consensus 195 --~-L~~---~~~~ADIvV~AvGkp 213 (288)
T PRK14171 195 --N-LSS---ITSKADIVVAAIGSP 213 (288)
T ss_pred --C-HHH---HHhhCCEEEEccCCC
Confidence 1 111 235788888766543
No 164
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=79.45 E-value=41 Score=29.16 Aligned_cols=150 Identities=15% Similarity=0.058 Sum_probs=74.2
Q ss_pred CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH---HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCC
Q 023179 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS---IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKK 177 (286)
Q Consensus 101 ~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~---~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~ 177 (286)
...|.||..+..+.... . . ...+++++.+|..... .+.... ..+............+.+++.|.+....
T Consensus 59 ~~vd~iI~~~~~~~~~~-~-~---~~~~iPvV~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~g 130 (281)
T cd06325 59 DKPDLIVAIATPAAQAA-A-N---ATKDIPIVFTAVTDPVGAGLVKSLE---KPGGNVTGVSDLVPVETQLELLKKLLPD 130 (281)
T ss_pred cCCCEEEEcCcHHHHHH-H-H---cCCCCCEEEEecCCccccccccccc---cCCCceeCeecccchHHHHHHHHHHCCC
Confidence 57899998765443322 1 1 1246788888743211 110000 0011111112223345555666554324
Q ss_pred CCEEEEEcCCC------ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH-cCCCCEEEEeChHHHHHHHHHhccc
Q 023179 178 KCTVLYPASAK------ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 178 ~~rvL~~~g~~------~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~-~~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
.+++.++.+.. ..+.+.+.+++.|+++.....+ ......+.++. +...|+|++.+-..+...+..+.+.
T Consensus 131 ~~~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~dai~~~~d~~a~~~~~~~~~~ 206 (281)
T cd06325 131 AKTVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEATVS----SSNDVQQAAQSLAGKVDAIYVPTDNTVASAMEAVVKV 206 (281)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEEEecC----CHHHHHHHHHHhcccCCEEEEcCchhHHhHHHHHHHH
Confidence 57888774422 2356677888888876542211 11111122333 2457999988776665555555443
Q ss_pred c-CCCceEEEeCH
Q 023179 251 E-QWSNSVACIGE 262 (286)
Q Consensus 251 ~-~~~~~iv~IG~ 262 (286)
+ ..+++++++..
T Consensus 207 ~~~~~ipvig~d~ 219 (281)
T cd06325 207 ANEAKIPVIASDD 219 (281)
T ss_pred HHHcCCCEEEcCH
Confidence 2 12466666654
No 165
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=79.43 E-value=67 Score=31.62 Aligned_cols=194 Identities=16% Similarity=0.098 Sum_probs=103.1
Q ss_pred CchHHHHHHHHhCCCcEEEe-ceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cCCCCcEEEEEC-h
Q 023179 60 GKNGKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-A 136 (286)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~-~~~~~~~i~aVG-~ 136 (286)
.+-.++.+.|++.|+++..+ |. ....++ |.++...+.-|..++..-....+.+++ .+.+-+...=+| .
T Consensus 175 ~D~~elkrlL~~lGi~vn~v~p~-----g~s~~d----l~~l~~A~~NIv~~~~~g~~~A~~Le~~fGiP~i~~~PiG~~ 245 (511)
T TIGR01278 175 HDLIELRRLLKTLGIEVNVVAPW-----GASIAD----LARLPAAWLNICPYREIGLMAAEYLKEKFGQPYITTTPIGVN 245 (511)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCC-----CCCHHH----HHhcccCcEEEEechHHHHHHHHHHHHHhCCCcccccccCHH
Confidence 35579999999999999764 52 112233 334555666666677655555666644 344444345566 6
Q ss_pred hhHHHHHHhhhc-cCCCCceeccCCCCCHHHHHH----------h---cc-cCCCCCCEEEEEcCCCChhHHHHHHH-hC
Q 023179 137 GTASIFEEVIQS-SKCSLDVAFSPSKATGKILAS----------E---LP-KNGKKKCTVLYPASAKASNEIEEGLS-NR 200 (286)
Q Consensus 137 ~Ta~~L~~~~~~-~~~G~~~~~~~~~~~~e~L~~----------~---L~-~~~~~~~rvL~~~g~~~~~~L~~~L~-~~ 200 (286)
.|.+.|++..+. +..|+.+. .+.+++ . +. .+...|+|+.+..+..-.-.+...|. +.
T Consensus 246 ~T~~fL~~l~~~~~~~g~~~~-------~e~~i~~e~~~~~~~~~~~r~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~El 318 (511)
T TIGR01278 246 ATRRFIREIAALLNQAGADPY-------YESFILDGLSAVSQAAWFARSIDSQSLTGKRAFVFGDATHAVGMTKILAREL 318 (511)
T ss_pred HHHHHHHHHHHHHhhcCCCCc-------HHHHHHhhhhhhhhHHHHHhhhhhHHhcCCeEEEEcCcHHHHHHHHHHHHhC
Confidence 777888877321 01122210 111110 0 11 11236789998887766667788897 89
Q ss_pred CCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeC-hHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeEEe
Q 023179 201 GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS-PSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYY 278 (286)
Q Consensus 201 G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS-~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v~~ 278 (286)
|++|...-+|.....+.. ....+ ...+-++++. ...++..+... ...++.-+..-...++++|...+.+
T Consensus 319 G~~vv~~gt~~~~~~~~~-~~~~~--~~~~~~~i~dD~~ei~~~i~~~------~pdliiG~~~er~~a~~lgip~~~i 388 (511)
T TIGR01278 319 GIHIVGAGTYCKYDADWV-REQVA--GYVDEVLITDDFQEVADAIAAL------EPELVLGTQMERHSAKRLDIPCGVI 388 (511)
T ss_pred CCEEEecCCchhhhHHHH-HHHHH--hcCCCeEEeCCHHHHHHHHHhc------CCCEEEEChHHHHHHHHcCCCEEEe
Confidence 999976666653211111 11111 1122333332 33333332222 2345555565666677788765433
No 166
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=78.69 E-value=59 Score=32.22 Aligned_cols=116 Identities=16% Similarity=0.178 Sum_probs=73.2
Q ss_pred CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 023179 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (286)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~ 207 (286)
+..++.-.-+|++.++++. .+.|+.+ +.+.-+++..|......+.++.++.....-..+
T Consensus 54 ~~dviIsrG~ta~~i~~~~-----~iPVv~i--~~s~~Dil~al~~a~~~~~~ia~vg~~~~~~~~-------------- 112 (526)
T TIGR02329 54 RCDVVVAGGSNGAYLKSRL-----SLPVIVI--KPTGFDVMQALARARRIASSIGVVTHQDTPPAL-------------- 112 (526)
T ss_pred CCcEEEECchHHHHHHHhC-----CCCEEEe--cCChhhHHHHHHHHHhcCCcEEEEecCcccHHH--------------
Confidence 4566666667999999985 6666555 345666777775443334566665543322111
Q ss_pred EeeeeecCCCCcHHHHHHc-CCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeEEeC
Q 023179 208 NTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYP 279 (286)
Q Consensus 208 ~vY~~~~~~~~~~~~~~~~-~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v~~~ 279 (286)
..+.+.+ -+++.+.+.+...++..+..+++. +..+++=|-.|.+.++++|++.+.+-
T Consensus 113 ------------~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~~---G~~~viG~~~~~~~A~~~gl~~ili~ 170 (526)
T TIGR02329 113 ------------RRFQAAFNLDIVQRSYVTEEDARSCVNDLRAR---GIGAVVGAGLITDLAEQAGLHGVFLY 170 (526)
T ss_pred ------------HHHHHHhCCceEEEEecCHHHHHHHHHHHHHC---CCCEEECChHHHHHHHHcCCceEEEe
Confidence 1111112 267777888888888888777653 46677777788888888998877543
No 167
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=78.22 E-value=6.6 Score=32.47 Aligned_cols=69 Identities=17% Similarity=0.067 Sum_probs=47.3
Q ss_pred CCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChH
Q 023179 162 ATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 162 ~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~s 238 (286)
.|+.++++.|..+. ..|++++++ |+.....-|...|.++|+.|+.+..|+. . ..+.....|+|+-..+.
T Consensus 18 cTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~-----~---l~~~~~~ADIVVsa~G~ 89 (160)
T PF02882_consen 18 CTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTK-----N---LQEITRRADIVVSAVGK 89 (160)
T ss_dssp HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSS-----S---HHHHHTTSSEEEE-SSS
T ss_pred CCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCC-----c---ccceeeeccEEeeeecc
Confidence 47888887776654 378898888 6767788899999999999988877762 1 12224688888877754
No 168
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=77.95 E-value=64 Score=30.61 Aligned_cols=199 Identities=14% Similarity=0.115 Sum_probs=97.9
Q ss_pred CCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cCCCCcEEEEEC-h
Q 023179 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-A 136 (286)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~-~~~~~~~i~aVG-~ 136 (286)
..+..++.+.|++.|+++..+. ......+++. +......-+..++.....+.+.+++ .+.+-....-+| +
T Consensus 170 ~~d~~el~~lL~~~Gl~v~~~~----~~~~s~eei~----~~~~A~lniv~~~~~~~~~a~~L~~~fGip~~~~~p~G~~ 241 (410)
T cd01968 170 AGELWGVKPLLEKLGIRVLASI----TGDSRVDEIR----RAHRAKLNVVQCSKSMIYLARKMEEKYGIPYIEVSFYGIR 241 (410)
T ss_pred cccHHHHHHHHHHcCCeEEEEe----CCCCCHHHHH----hhhhCcEEEEEchhHHHHHHHHHHHHhCCCeEecCcCcHH
Confidence 3455799999999999987531 1111223332 4455555555555444445666654 333322111144 4
Q ss_pred hhHHHHHHhhhccCCCCce--eccCCC--CCHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEee
Q 023179 137 GTASIFEEVIQSSKCSLDV--AFSPSK--ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~--~~~~~~--~~~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY 210 (286)
.|.+.|++..+.- |... +..++. ..-+.+.+.|... ...|+|+.+..+....-.+...|.+.|++|..+.++
T Consensus 242 ~t~~~l~~ia~~~--g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~gkrv~i~~~~~~~~~la~~l~elGm~v~~~~~~ 319 (410)
T cd01968 242 DTSKSLRNIAELL--GDEELIERTEELIAREEARLRPELAPYRARLEGKKAALYTGGVKSWSLVSALQDLGMEVVATGTQ 319 (410)
T ss_pred HHHHHHHHHHHHh--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEecc
Confidence 5667776652111 3321 000000 0011122333221 126789988777666677889999999998777554
Q ss_pred eeecCCCCcHHHHHHcCCCCEEEEeChHH--HHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeE
Q 023179 211 TTEPVHHVDQTVLKQALSIPVVAVASPSA--VRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 276 (286)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~d~IvftS~sa--v~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v 276 (286)
...+ ...+.+.+ ....+.+++..... +...+...+ ..++.-+..-...+++.|+..+
T Consensus 320 ~~~~--~~~~~~~~-~~~~~~~v~~~~~~~e~~~~i~~~~------pDl~ig~s~~~~~a~~~gip~~ 378 (410)
T cd01968 320 KGTK--EDYERIKE-LLGEGTVIVDDANPRELKKLLKEKK------ADLLVAGGKERYLALKLGIPFC 378 (410)
T ss_pred cCCH--HHHHHHHH-HhCCCcEEEeCCCHHHHHHHHhhcC------CCEEEECCcchhhHHhcCCCEE
Confidence 3221 11112222 22345555555433 333333322 2343334343455566676543
No 169
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=77.67 E-value=10 Score=35.73 Aligned_cols=202 Identities=14% Similarity=0.109 Sum_probs=111.9
Q ss_pred CCCCeEEEeC---CC-CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH
Q 023179 48 NSNPKVVVTR---ER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (286)
Q Consensus 48 l~g~~VLitR---~~-~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~ 123 (286)
...++|-|.- .. .+..++.+.|++.|+++..++.-.. +.++ +++....+.-+..++.+...+.+.+++
T Consensus 142 ~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~----t~~e----~~~~~~A~lniv~~~~~~~~~a~~L~e 213 (398)
T PF00148_consen 142 KKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGT----TLEE----IRKAPEAALNIVLCPEGGPYAAEWLEE 213 (398)
T ss_dssp TSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTB----CHHH----HHHGGGSSEEEESSCCHHHHHHHHHHH
T ss_pred CCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCC----CHHH----HHhCCcCcEEEEeccchhhHHHHHHHH
Confidence 3345665542 22 3567999999999997765542222 1233 335567788888888877766676665
Q ss_pred cCCCCcEEEE----EC-hhhHHHHHHhhhccCCCCceeccCCC--CCHHHHHHhcccCC--CCCCEEEEEcCCCChhHHH
Q 023179 124 AGTPNVRIGV----VG-AGTASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPKNG--KKKCTVLYPASAKASNEIE 194 (286)
Q Consensus 124 ~~~~~~~i~a----VG-~~Ta~~L~~~~~~~~~G~~~~~~~~~--~~~e~L~~~L~~~~--~~~~rvL~~~g~~~~~~L~ 194 (286)
. -+++++. +| +.|.+.+++..+.- |.. ..++. ..-+...+.+.+.. ..|+|+++..+....-.|.
T Consensus 214 ~--~giP~~~~~~p~G~~~t~~~l~~i~~~l--g~~--~~~~~i~~~~~~~~~~l~~~~~~l~g~~v~i~~~~~~~~~l~ 287 (398)
T PF00148_consen 214 R--FGIPYLYFPSPYGIEGTDAWLRAIAEAL--GKP--IAEAEIAEERERAEDALADYRERLGGKRVAIYGDPDRALGLA 287 (398)
T ss_dssp H--HT-EEEEEC-SBSHHHHHHHHHHHHHHH--THH--HHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEESSHHHHHHHH
T ss_pred H--hCCCeeeccccccHHHHHHHHHHHHHHh--CCc--hhhHHHHHHHHHHHHHHHhhHHhhcCceEEEEcCchhHHHHH
Confidence 3 1334433 44 34556666552111 311 10100 00111222222211 1578999888877777889
Q ss_pred HHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCC-CCEEEEe-ChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHc
Q 023179 195 EGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALS-IPVVAVA-SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRL 271 (286)
Q Consensus 195 ~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~-~d~Ivft-S~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~ 271 (286)
..|.+.|++|..+.++....... +.....+.. -+.|+++ +...++..++..+ ..++..+......+++.
T Consensus 288 ~~L~elG~~v~~v~~~~~~~~~~--e~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~------pdl~ig~~~~~~~a~~~ 358 (398)
T PF00148_consen 288 RFLEELGMEVVAVGCDDKSPEDE--ERLRWLLEESDPEVIIDPDPEEIEELLEELK------PDLLIGSSHERYLAKKL 358 (398)
T ss_dssp HHHHHTT-EEEEEEESSGGHHHH--HHHHHHHHTTCSEEEESCBHHHHHHHHHHHT-------SEEEESHHHHHHHHHT
T ss_pred HHHHHcCCeEEEEEEccCchhHH--HHHHHHhhCCCcEEEeCCCHHHHHHHHHhcC------CCEEEechhhHHHHHHh
Confidence 99999999998877766643322 222222222 3455554 6766666665543 44677777777777777
No 170
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.40 E-value=21 Score=32.36 Aligned_cols=147 Identities=14% Similarity=0.054 Sum_probs=80.0
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHH--HHH--HHHHHHHH-cCCCCcEEEEEChh
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AGS--VFLEAWKE-AGTPNVRIGVVGAG 137 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~--av~--~~~~~l~~-~~~~~~~i~aVG~~ 137 (286)
.+..++.|+++..+-+-+. ...+++.+.+ +.....|.|++--|- ... ..++.+.- ...|+..-.-.|.
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~N~g~- 127 (282)
T PRK14169 52 QRRAEDIGVRSLMFRLPEA---TTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGR- 127 (282)
T ss_pred HHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcccCcccCChhhhHH-
Confidence 4456677888765444222 1223444444 345678999998883 221 12222211 0112332222221
Q ss_pred hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
|- . |- ..+.| .|+.++++.|..+. ..|++++++ ||+....-|...|..+|++|+.+.-.+.
T Consensus 128 ----l~-~------~~-~~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T~-- 191 (282)
T PRK14169 128 ----LW-A------NE-PTVVA--STPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTR-- 191 (282)
T ss_pred ----Hh-c------CC-CCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCCC--
Confidence 11 1 21 11343 57888887776553 378888877 8888888899999999999876654331
Q ss_pred CCCCcHHHHHHcCCCCEEEEeChH
Q 023179 215 VHHVDQTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 215 ~~~~~~~~~~~~~~~d~IvftS~s 238 (286)
+ .++ ...+.|+|+..-+.
T Consensus 192 --~-l~~---~~~~ADIvI~AvG~ 209 (282)
T PRK14169 192 --N-LKQ---LTKEADILVVAVGV 209 (282)
T ss_pred --C-HHH---HHhhCCEEEEccCC
Confidence 1 111 13467777765443
No 171
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=76.93 E-value=47 Score=30.69 Aligned_cols=142 Identities=14% Similarity=0.029 Sum_probs=81.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (286)
.+.+.|.+.|.++...+.- +..+..+++ ..+..|...+++..++.... ..+. ..++++++...
T Consensus 25 ~fe~~l~~~Gl~Ve~~~f~------~~~~~l~Al-~aG~iD~~~~g~~~~~~~~~----a~g~-~~~iv~v~~~~----- 87 (328)
T TIGR03427 25 IVDKWADKYGITIEVVQIN------DYVESINQY-TAGKFDGCTMTNMDALTIPA----AGGV-DTTALIVGDFS----- 87 (328)
T ss_pred chhhhHHHcCCeEEEEECC------ChHHHHHHH-HcCCCCEEeecCHHHHHHHH----hCCC-CeEEEEEEccC-----
Confidence 3445667778776654331 112222334 34788988888766653221 1232 34666666432
Q ss_pred HhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHH
Q 023179 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVL 223 (286)
Q Consensus 144 ~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~ 223 (286)
. |-...++++..+.++| +||||-+.+|..+.-.|...|++.|.+...+.+-...+. + ....+
T Consensus 88 -~------g~~~ivv~~i~svaDL---------KGKkIav~~gs~~~~ll~~aL~~aGL~~~DV~~v~~~~~-d-~~aAl 149 (328)
T TIGR03427 88 -N------GNDGIVLKGGKSLADL---------KGQKVNLVELSVSHYLLARALESVGLSEKDVKVVNTSDA-D-IVAAF 149 (328)
T ss_pred -C------CceEEEECCCCCHHHc---------CCCEEeccCCChHHHHHHHHHHHcCCCHHHeEEEeCChH-H-HHHHH
Confidence 1 2222233322233333 789999999988888899999999997655554433321 1 11122
Q ss_pred HHcCCCCEEEEeChHHHH
Q 023179 224 KQALSIPVVAVASPSAVR 241 (286)
Q Consensus 224 ~~~~~~d~IvftS~sav~ 241 (286)
. .+++|+++..-|....
T Consensus 150 ~-~G~VDAa~~~eP~~s~ 166 (328)
T TIGR03427 150 I-TKDVTAVVTWNPQLSE 166 (328)
T ss_pred h-cCCCcEEEEcCchHHH
Confidence 1 3789999988887554
No 172
>PLN02928 oxidoreductase family protein
Probab=76.58 E-value=24 Score=32.86 Aligned_cols=137 Identities=12% Similarity=0.054 Sum_probs=71.6
Q ss_pred CCCCeEEEeCCCCch--HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHc
Q 023179 48 NSNPKVVVTRERGKN--GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEA 124 (286)
Q Consensus 48 l~g~~VLitR~~~~~--~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~~ 124 (286)
...++||++.+.... ..+.+.+++.+. ..+. ..+.+++.+ .+.++|.++.... .+ +.+++.
T Consensus 16 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~e~~~---~~~~~d~~i~~~~-~~~~~~l~~---- 79 (347)
T PLN02928 16 MRPTRVLFCGPEFPASYSYTREYLQKYPF--IQVD------AVAREDVPD---VIANYDICVPKMM-RLDADIIAR---- 79 (347)
T ss_pred CCCCEEEEECCCchhHHHHHHHHhhcCCe--eEec------CCCHHHHHH---HhcCCcEEEECCC-CCCHHHHhc----
Confidence 345679999765432 224555654442 2221 112233333 3567887665422 12 112221
Q ss_pred CCCCcEEE-EEChhh----HHHHHHhhhccCCCCceeccCCC--CCHHHHHHhccc--------------------C---
Q 023179 125 GTPNVRIG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPK--------------------N--- 174 (286)
Q Consensus 125 ~~~~~~i~-aVG~~T----a~~L~~~~~~~~~G~~~~~~~~~--~~~e~L~~~L~~--------------------~--- 174 (286)
.++++++ ..|.++ ..++.+. |+.+...|.. .+++.+++.-.. +
T Consensus 80 -~~~Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~ 152 (347)
T PLN02928 80 -ASQMKLIMQFGVGLEGVDVDAATKH------GIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEP 152 (347)
T ss_pred -CCCceEEEECCcccCcCcHHHHHhC------CCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccc
Confidence 2455544 344443 2456667 8888766542 133333221100 1
Q ss_pred ---CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 023179 175 ---GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (286)
Q Consensus 175 ---~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~ 207 (286)
...|+++.+++-......+...|+..|.+|.-+
T Consensus 153 ~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~ 188 (347)
T PLN02928 153 IGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLAT 188 (347)
T ss_pred cccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE
Confidence 136789999976666667899999999877543
No 173
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=76.54 E-value=74 Score=30.54 Aligned_cols=38 Identities=13% Similarity=0.050 Sum_probs=31.6
Q ss_pred ccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEec
Q 023179 43 SASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELP 80 (286)
Q Consensus 43 ~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P 80 (286)
..++|+.|.+|..+-+-. +...|.+.|.+.|++|....
T Consensus 29 ~~~~p~~g~~i~~~~hl~~~ta~l~~~L~~~GA~v~~~~ 67 (413)
T cd00401 29 GASKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSS 67 (413)
T ss_pred hccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEc
Confidence 346999999999997764 67899999999999987554
No 174
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=76.45 E-value=30 Score=32.74 Aligned_cols=163 Identities=16% Similarity=0.115 Sum_probs=87.5
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcE
Q 023179 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVR 130 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~ 130 (286)
|+|++....+ ...+.+.+.| ++..+|-- +.. .+ .+.++|.++..|..-+.. +.+ + . .+++
T Consensus 1 mkI~~d~~~p---~~~~~~~~~~-~v~~~~~~------~~~--~~---~l~daD~liv~~~t~v~~--~ll-~-~-~~Lk 60 (381)
T PRK00257 1 MKIVADENIP---LLDAFFAGFG-EIRRLPGR------AFD--RA---AVRDADVLLVRSVTRVDR--ALL-E-G-SRVR 60 (381)
T ss_pred CEEEEecCch---hHHHHHhhCC-cEEEcCCc------ccC--HH---HhCCceEEEEeCCCCCCH--HHh-c-C-CCCe
Confidence 5778877653 3344454443 55554421 110 11 356789988776533321 112 1 1 3555
Q ss_pred EEE-EChhh----HHHHHHhhhccCCCCceeccCCCCCHHHHHHhc-------ccC---CCCCCEEEEEcCCCChhHHHH
Q 023179 131 IGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL-------PKN---GKKKCTVLYPASAKASNEIEE 195 (286)
Q Consensus 131 i~a-VG~~T----a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L-------~~~---~~~~~rvL~~~g~~~~~~L~~ 195 (286)
+++ .|-++ .+++++. |+.+...| +.++..+++.. .+. ...|++|.+++-......+..
T Consensus 61 ~I~~~~~G~D~iD~~~~~~~------gI~v~nap-g~na~aVAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~ 133 (381)
T PRK00257 61 FVGTCTIGTDHLDLDYFAEA------GITWSSAP-GCNARGVVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVR 133 (381)
T ss_pred EEEECCccccccCHHHHHHC------CCEEEECC-CcChHHHHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHH
Confidence 542 33333 3567777 99886665 44555554432 121 136789988865555566899
Q ss_pred HHHhCCCeeEEEEeeeeecCCC-CcHHHHHHcCCCCEEEEeChHHH
Q 023179 196 GLSNRGFEVVRLNTYTTEPVHH-VDQTVLKQALSIPVVAVASPSAV 240 (286)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~-~~~~~~~~~~~~d~IvftS~sav 240 (286)
.|+..|++|.-+..+....... ....+-+-+...|+|++.-|.+-
T Consensus 134 ~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~ 179 (381)
T PRK00257 134 VLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTK 179 (381)
T ss_pred HHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCC
Confidence 9999999875443322111000 00111111357899999888643
No 175
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.32 E-value=27 Score=31.65 Aligned_cols=149 Identities=19% Similarity=0.166 Sum_probs=82.6
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeCHHH--HH--HHHHHHHHc-CCCCcEEEEECh
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPEA--GS--VFLEAWKEA-GTPNVRIGVVGA 136 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~---l~~~~~~d~IvFTS~~a--v~--~~~~~l~~~-~~~~~~i~aVG~ 136 (286)
-.+..++.|+++..+-+-+.. ..+++.+. ++.....|.|++--|-- .. .+++.+... ..|+..-.-.|.
T Consensus 52 k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 128 (282)
T PRK14180 52 KEKACAQVGIDSQVITLPEHT---TESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGR 128 (282)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHH
Confidence 445566789887655442222 12334444 44456788999988732 22 122222110 112332222222
Q ss_pred hhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeee
Q 023179 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
-- . |-...+.| .|+.++++.|..+. ..|++++++ ||.....-|...|.++|++|+.+...+.
T Consensus 129 l~------~------g~~~~~~P--cTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~- 193 (282)
T PRK14180 129 LQ------L------RDKKCLES--CTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT- 193 (282)
T ss_pred Hh------c------CCCCCcCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCC-
Confidence 11 1 31112343 57888887777653 368898888 7888888899999999999977665331
Q ss_pred cCCCCcHHHHHHcCCCCEEEEeChH
Q 023179 214 PVHHVDQTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~IvftS~s 238 (286)
+ ..+ ...+.|+|+..-+.
T Consensus 194 ---d-l~~---~~k~ADIvIsAvGk 211 (282)
T PRK14180 194 ---D-LKS---HTTKADILIVAVGK 211 (282)
T ss_pred ---C-HHH---HhhhcCEEEEccCC
Confidence 1 111 23567777765543
No 176
>PRK10537 voltage-gated potassium channel; Provisional
Probab=76.15 E-value=32 Score=32.70 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=72.5
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEE----------eeeC-CCchHHHHHHhcCCCccEEEEeCHHHHHHHH
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ----------HAQG-PDTDRLSSVLNADTIFDWIIITSPEAGSVFL 118 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~----------~~~~-~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~ 118 (286)
..+|+|+.-..-+..+.+.|.++|.++..+---+ .... +..++..+.. .+++.+.++.++.+..+...
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~A-gI~~A~aVI~~t~dD~~Nl~ 318 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKA-GAARARAILALRDNDADNAF 318 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhc-CcccCCEEEEcCCChHHHHH
Confidence 5678888888778889999999988764432100 0001 1112222222 46788999998887665553
Q ss_pred HHH--HHcCCCCcEEE--EEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 119 EAW--KEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 119 ~~l--~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
-.+ ++.+ ++.+++ +-.+...+.+++. |.+..+.|..-.++.|++.+..
T Consensus 319 ivL~ar~l~-p~~kIIa~v~~~~~~~~L~~~------GaD~VIsp~~l~g~~la~~l~g 370 (393)
T PRK10537 319 VVLAAKEMS-SDVKTVAAVNDSKNLEKIKRV------HPDMIFSPQLLGSELLARTLNG 370 (393)
T ss_pred HHHHHHHhC-CCCcEEEEECCHHHHHHHHhc------CCCEEECHHHHHHHHHHHHhcC
Confidence 322 3333 345554 4567777888888 9988888876667777766643
No 177
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=76.15 E-value=45 Score=28.31 Aligned_cols=91 Identities=22% Similarity=0.284 Sum_probs=58.7
Q ss_pred CCeEEEeCCCCch-----HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHHH
Q 023179 50 NPKVVVTRERGKN-----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLE 119 (286)
Q Consensus 50 g~~VLitR~~~~~-----~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~-----~av~~~~~ 119 (286)
+.+|++....++. .-....|+.+|++|+++.. ..+ .+.+.+.+ ...++|.|.+++. ..+..+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~----~~p-~~~l~~~~-~~~~~d~v~lS~~~~~~~~~~~~~i~ 155 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGR----DVP-PEEFVEAV-KEHKPDILGLSALMTTTMGGMKEVIE 155 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCC----CCC-HHHHHHHH-HHcCCCEEEEeccccccHHHHHHHHH
Confidence 5677777666543 3456778899999987761 111 24565666 3467888887763 34455566
Q ss_pred HHHHcCC-CCcEEEEEChhhHHHHHHhh
Q 023179 120 AWKEAGT-PNVRIGVVGAGTASIFEEVI 146 (286)
Q Consensus 120 ~l~~~~~-~~~~i~aVG~~Ta~~L~~~~ 146 (286)
.+++.+. ++++|++=|......+.+..
T Consensus 156 ~lr~~~~~~~~~i~vGG~~~~~~~~~~~ 183 (201)
T cd02070 156 ALKEAGLRDKVKVMVGGAPVNQEFADEI 183 (201)
T ss_pred HHHHCCCCcCCeEEEECCcCCHHHHHHc
Confidence 6666643 47899999977666665553
No 178
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=76.09 E-value=13 Score=31.59 Aligned_cols=58 Identities=17% Similarity=0.136 Sum_probs=35.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeC------CCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQG------PDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAW 121 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~------~~~~~l~~~l~~~~~~d~IvFTS~-------~av~~~~~~l 121 (286)
...+.+.+.|.++..+.+...... ...+.+.+..+.+...|.|||-|| ...+.|++.+
T Consensus 22 ~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l 92 (191)
T PRK10569 22 YAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKASFSGALKTLLDLL 92 (191)
T ss_pred HHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCCCCHHHHHHHHhC
Confidence 444555668999987776653321 012345555555678999999998 3445555544
No 179
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.96 E-value=29 Score=31.42 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=83.0
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHH--HHH--HHHHHHHH-cCCCCcEEEEEChh
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AGS--VFLEAWKE-AGTPNVRIGVVGAG 137 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~--av~--~~~~~l~~-~~~~~~~i~aVG~~ 137 (286)
.+..++.|+++..+-+-+.. ..+++.+.+ +.....|.|++--|- ... ..++.+.- ...|+..-.-+|.
T Consensus 48 ~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~KDVDGl~~~n~g~- 123 (279)
T PRK14178 48 HRACERVGIGSVGIELPGDA---TTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLGR- 123 (279)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccCcccCChhhHHH-
Confidence 45566779887654442221 223444444 345678999998872 222 11221111 0112333222222
Q ss_pred hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
|- . |- ..+.| .|+.++++.|.... ..|++++++ ++......|...|...|++|..+.-++
T Consensus 124 ----l~-~------~~-~~~~P--cTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--- 186 (279)
T PRK14178 124 ----LV-S------GL-PGFAP--CTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--- 186 (279)
T ss_pred ----Hh-C------CC-CCCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh---
Confidence 11 1 21 12444 57888887776653 378999888 555667778888989999887665432
Q ss_pred CCCCcHHHHHHcCCCCEEEEeChHH
Q 023179 215 VHHVDQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 215 ~~~~~~~~~~~~~~~d~IvftS~sa 239 (286)
..+.+...+.|+|+-+-+..
T Consensus 187 -----~~L~~~~~~ADIvI~Avgk~ 206 (279)
T PRK14178 187 -----ENLKAELRQADILVSAAGKA 206 (279)
T ss_pred -----hHHHHHHhhCCEEEECCCcc
Confidence 11222346889998888654
No 180
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=75.55 E-value=69 Score=30.31 Aligned_cols=204 Identities=13% Similarity=0.061 Sum_probs=101.2
Q ss_pred CCeEEEeC--CCCchHHHHHHHHhCCCcEE-EeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cC
Q 023179 50 NPKVVVTR--ERGKNGKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AG 125 (286)
Q Consensus 50 g~~VLitR--~~~~~~~l~~~L~~~G~~v~-~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~-~~ 125 (286)
..+|.+.- +..+..++.+.|++.|+++. .+|- .+.++ +.....-..++..++... ...+.+++ .+
T Consensus 155 ~~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d------~~~~~----~~~~~~a~~~~~~~~~~~-~~A~~Le~r~g 223 (396)
T cd01979 155 ERSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPP------RRYTD----LPVIGPGTYVLGIQPFLS-RTATTLMRRRK 223 (396)
T ss_pred CCceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCC------CChHH----hhccCcceEEEEeChhHH-HHHHHHHHhcC
Confidence 34455443 22345789999999999996 3332 12222 223344445555566554 34555544 23
Q ss_pred CCCcEE-EEEC-hhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEEcCCCChhHHHHHHHhCC
Q 023179 126 TPNVRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRG 201 (286)
Q Consensus 126 ~~~~~i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~~g~~~~~~L~~~L~~~G 201 (286)
.+-... +-+| +.|.+.|++..+.- |.......+ ..+.+.+.+.... ..|+|+.+..+....-.+...|.+.|
T Consensus 224 iP~~~~~~P~G~~~t~~~l~~la~~~--g~~~~~i~~--e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~elG 299 (396)
T cd01979 224 CKLLSAPFPIGPDGTRAWLEAICSAF--GIFPSVLAE--REARAWRALEPYLDLLRGKSIFFMGDNLLEIPLARFLTRCG 299 (396)
T ss_pred CCcccCCcCcChHHHHHHHHHHHHHh--CCChhHHHH--HHHHHHHHHHHHHHhhcCCEEEEECCchHHHHHHHHHHHCC
Confidence 332222 2255 35666666653211 321111111 1122334443322 27889988877665667889999999
Q ss_pred CeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCe
Q 023179 202 FEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 275 (286)
Q Consensus 202 ~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~ 275 (286)
++|..+-+ .. ......+..++.+. .++.+.... ....+.+.+.+. +..++.-|...+..+.+.|+-.
T Consensus 300 m~vv~~~t-~~-~~~~~~~~~~~~l~-~~~~v~~~~-d~~~l~~~i~~~---~pDlli~~~~~a~pl~r~G~P~ 366 (396)
T cd01979 300 MIVVEVGT-PY-LDKRFQAAELELLP-PMVRIVEKP-DNYRQLDRIREL---RPDLVVTGLGLANPLEARGITT 366 (396)
T ss_pred CEEEeeCC-Cc-CChHHHHHHHHhcC-CCCeEEECC-CHHHHHHHHHhc---CCCEEEecccccCcHHhCCCcc
Confidence 99876532 11 11111122233232 344444432 222233333321 2334444666666788888753
No 181
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.39 E-value=24 Score=32.26 Aligned_cols=149 Identities=13% Similarity=0.044 Sum_probs=83.3
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHH--HHH--HHHHHHHH-cCCCCcEEEEECh
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AGS--VFLEAWKE-AGTPNVRIGVVGA 136 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~--av~--~~~~~l~~-~~~~~~~i~aVG~ 136 (286)
-.+..++.|+++..+-+-+.. +.+++.+.+ +.....|.|++--|- ... .+++.+.- ...|+..-.-.|
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g- 128 (297)
T PRK14186 53 KEKACARVGIASFGKHLPADT---SQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNLG- 128 (297)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhHH-
Confidence 345566779888654442221 223344444 445678999999883 221 12222211 011333322233
Q ss_pred hhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeee
Q 023179 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
.|- . |-. .+.| .|+.++++.|..+. ..|++++++ |++....-|...|..+|++|+.+.-.+.
T Consensus 129 ----~l~-~------~~~-~~~P--cTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~- 193 (297)
T PRK14186 129 ----RLV-K------GEP-GLRS--CTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQ- 193 (297)
T ss_pred ----HHh-C------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC-
Confidence 111 1 211 2444 57888887776653 378888887 8888888899999999999976654321
Q ss_pred cCCCCcHHHHHHcCCCCEEEEeChHH
Q 023179 214 PVHHVDQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~IvftS~sa 239 (286)
+ .++ ...+.|+|+..-+..
T Consensus 194 ---~-l~~---~~~~ADIvIsAvGkp 212 (297)
T PRK14186 194 ---D-LAS---ITREADILVAAAGRP 212 (297)
T ss_pred ---C-HHH---HHhhCCEEEEccCCc
Confidence 1 112 135778877766543
No 182
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=74.91 E-value=5.3 Score=31.97 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=44.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCC-----------CchHHHHHHhcCCCccEEEEeCHH-------HHHHHHHHHH--
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGP-----------DTDRLSSVLNADTIFDWIIITSPE-------AGSVFLEAWK-- 122 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~-----------~~~~l~~~l~~~~~~d~IvFTS~~-------av~~~~~~l~-- 122 (286)
+.+.+.|++.|+++..+.+-.. +.+ ..+.+.+.++.+...|.|||-||. .++.|++.+.
T Consensus 21 ~~~~~~l~~~g~e~~~i~l~~~-~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y~~~~s~~lK~~lD~~~~~ 99 (152)
T PF03358_consen 21 EAVAEQLEEAGAEVEVIDLADY-PLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVYNGSVSGQLKNFLDRLSCW 99 (152)
T ss_dssp HHHHHHHHHTTEEEEEEECTTS-HCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEBTTBE-HHHHHHHHTHHHT
T ss_pred HHHHHHHHHcCCEEEEEecccc-chhhcccccccccCCcHHHHHHHhceecCCeEEEeecEEcCcCChhhhHHHHHhccc
Confidence 4555666677888877766654 111 123455555556789999999974 6677787775
Q ss_pred -HcCCCCcEEEEE
Q 023179 123 -EAGTPNVRIGVV 134 (286)
Q Consensus 123 -~~~~~~~~i~aV 134 (286)
...+.+.+++.+
T Consensus 100 ~~~~~~~K~~~~i 112 (152)
T PF03358_consen 100 FRRALRGKPVAII 112 (152)
T ss_dssp HTTTTTTSEEEEE
T ss_pred cccccCCCEEEEE
Confidence 333445555544
No 183
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=74.74 E-value=57 Score=31.75 Aligned_cols=171 Identities=11% Similarity=0.053 Sum_probs=89.1
Q ss_pred CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CCCCcEEEEECh-h
Q 023179 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVGA-G 137 (286)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~-~~~~~~i~aVG~-~ 137 (286)
++..++.+.|++.|+++.. .+. .. ..+++ +....+..+-+..++.+.....+.+++. +.+-..+--+|- .
T Consensus 220 gd~~eik~lL~~~Gi~v~~--~~s--g~---~t~~~-i~~~~~A~lniv~~~~~~~~~A~~Le~~fGiP~~~~~~~Gi~~ 291 (466)
T TIGR01282 220 GDAWESRILLEEIGLRVVA--QWS--GD---GTLNE-MENAPKAKLNLIHCYRSMNYISRHMEEKYGIPWMEYNFFGPTK 291 (466)
T ss_pred ccHHHHHHHHHHcCCeEEE--EEC--CC---CCHHH-HHhcccCCEEEEEChHHHHHHHHHHHHHhCCceEeCCCCCHHH
Confidence 3557899999999999873 221 11 12222 3355666677777776666666666553 333222112554 4
Q ss_pred hHHHHHHhhhccCCCCceeccCCCC-----CHHHHHHhccc---CCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEe
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSKA-----TGKILASELPK---NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~~-----~~e~L~~~L~~---~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~v 209 (286)
|.+.|++..+.- |.. .+++. .-++++..+.+ ....|+|+.+..|......+...|++.|++|...-+
T Consensus 292 T~~~Lr~ia~~~--g~~---i~~~~e~~I~~e~~~~~~~ld~~~~~L~GKrv~i~~g~~~~~~~~~~l~ELGmevv~~g~ 366 (466)
T TIGR01282 292 IAESLRKIAEFF--DDE---IKEKAEEVIAKYQPAVDAVIAKYRPRLEGKTVMLYVGGLRPRHVIGAFEDLGMEVIGTGY 366 (466)
T ss_pred HHHHHHHHHHHH--Cch---hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEee
Confidence 667777662111 211 11110 00112222222 123789998887766667788899999999964444
Q ss_pred eeeecCCCCcHHHHHHcCCCCEEEEeCh--HHHHHHHHH
Q 023179 210 YTTEPVHHVDQTVLKQALSIPVVAVASP--SAVRSWVNL 246 (286)
Q Consensus 210 Y~~~~~~~~~~~~~~~~~~~d~IvftS~--sav~~~~~~ 246 (286)
+... .+..+..++.+.. +.+++-.+ ..+..++..
T Consensus 367 ~~~~--~~~~~~~~~~~~~-~~~i~~~~d~~el~~~i~~ 402 (466)
T TIGR01282 367 EFAH--NDDYERTTKYMKD-GTLIYDDVTHYEFEEFVEK 402 (466)
T ss_pred ecCC--HHHHHHHHHhcCC-CeEEeeCCCHHHHHHHHHH
Confidence 2111 2222223333322 55555443 344544443
No 184
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=74.67 E-value=16 Score=27.74 Aligned_cols=88 Identities=20% Similarity=0.086 Sum_probs=53.9
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC--HHHHHHHHHHHH--HcCCCCcEEEEEChh
Q 023179 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS--PEAGSVFLEAWK--EAGTPNVRIGVVGAG 137 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS--~~av~~~~~~l~--~~~~~~~~i~aVG~~ 137 (286)
-..++..|+++|+++..+.... +.+.+.+.+.. .++|.|.|++ ........+..+ +...++.++++=|+.
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~-----~~~~l~~~~~~-~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANV-----PPEELVEALRA-ERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB------HHHHHHHHHH-TTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCeEEEECCCC-----CHHHHHHHHhc-CCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 4688899999999998663322 12556666633 5899999976 333333333322 223468899998876
Q ss_pred -h---HHHHHH-hhhccCCCCceeccCCC
Q 023179 138 -T---ASIFEE-VIQSSKCSLDVAFSPSK 161 (286)
Q Consensus 138 -T---a~~L~~-~~~~~~~G~~~~~~~~~ 161 (286)
| ...|++ . |+...+..+.
T Consensus 91 ~t~~~~~~l~~~~------~~D~vv~Geg 113 (121)
T PF02310_consen 91 ATADPEEILREYP------GIDYVVRGEG 113 (121)
T ss_dssp SGHHHHHHHHHHH------TSEEEEEETT
T ss_pred hhcChHHHhccCc------CcceecCCCh
Confidence 2 234444 4 7766555543
No 185
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=74.50 E-value=12 Score=30.16 Aligned_cols=70 Identities=23% Similarity=0.154 Sum_probs=50.1
Q ss_pred CCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChH
Q 023179 162 ATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 162 ~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~s 238 (286)
.+.+++.+.|..+. ..|++++++ |+.....-|...|.++|++|..+..... .. .+.....|+|+...+.
T Consensus 10 ~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~-----~l---~~~v~~ADIVvsAtg~ 81 (140)
T cd05212 10 PVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI-----QL---QSKVHDADVVVVGSPK 81 (140)
T ss_pred cHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc-----CH---HHHHhhCCEEEEecCC
Confidence 46777777776543 378888877 7777888999999999999877764321 11 1223688998888877
Q ss_pred H
Q 023179 239 A 239 (286)
Q Consensus 239 a 239 (286)
.
T Consensus 82 ~ 82 (140)
T cd05212 82 P 82 (140)
T ss_pred C
Confidence 6
No 186
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=74.32 E-value=31 Score=30.86 Aligned_cols=178 Identities=8% Similarity=0.081 Sum_probs=89.9
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
.+.+.+.++++|+++...+. . .+.+...+.++. ....|.||+.+.. .....++.+.+ .+++++.++..
T Consensus 17 ~~~i~~~a~~~g~~v~~~~~---~--~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~---~~iPvV~~d~~ 88 (302)
T TIGR02634 17 RDIFVAAAESLGAKVFVQSA---N--GNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKD---EGIKVVAYDRL 88 (302)
T ss_pred HHHHHHHHHhcCCEEEEEeC---C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHH---CCCeEEEecCc
Confidence 35677788889988865432 1 121222222322 2578999998753 33444455544 36789988865
Q ss_pred hHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhC----CCeeE
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR----GFEVV 205 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~----G~~V~ 205 (286)
... . .....+... ...+..+++.|.+.. ..++++++.|.... .-+.+.+++. ++.+.
T Consensus 89 ~~~----~------~~~~~V~~d~~~~g~~~~~~L~~~g-~~~~i~~i~g~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~ 157 (302)
T TIGR02634 89 IND----A------DIDFYLSFDNEKVGEMQARAVLEAA-PKGNYFLMGGSPTDNNAKLLRGGQMKVLQPAIDSGDIKIV 157 (302)
T ss_pred CCC----C------CccEEEecCHHHHHHHHHHHHHhhC-CCCCEEEEeCCCCCcchHHHHHHHHHHHhhhccCCCeEEe
Confidence 311 1 111112221 223455566665543 22367777664331 2233445442 12221
Q ss_pred EEEeeeeecCCCCc---HHHHHH-c----CCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCH
Q 023179 206 RLNTYTTEPVHHVD---QTVLKQ-A----LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 262 (286)
Q Consensus 206 ~~~vY~~~~~~~~~---~~~~~~-~----~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~ 262 (286)
. ..|. ..... .+..++ + ..+++|++.+-..+...+..+.+.+. .++.++.+..
T Consensus 158 ~-~~~~---~~~~~~~~~~~~~~ll~~~~~~~~aI~~~~D~~A~g~~~al~~~g~~~di~Vvg~d~ 219 (302)
T TIGR02634 158 G-DQWV---DGWLPENALRIMENALTANDNKVDAVVASNDATAGGAIQALTAQGLAGKVPISGQDA 219 (302)
T ss_pred c-CcCC---CCCCHHHHHHHHHHHHHhCCCCccEEEECCCchHHHHHHHHHHCCCCCCeEEEcCCC
Confidence 1 1111 11111 112222 1 35899999988877777777766532 2466777753
No 187
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.19 E-value=32 Score=31.27 Aligned_cols=147 Identities=16% Similarity=0.130 Sum_probs=81.4
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH--HH--HHHHHHHH-cCCCCcEEEEECh
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--GS--VFLEAWKE-AGTPNVRIGVVGA 136 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~a--v~--~~~~~l~~-~~~~~~~i~aVG~ 136 (286)
-.+..++.|+++..+-+-+. .+.+++.+.+ +...+.|.|++--|-- .. ..++.+.- ...|+..-.-.|
T Consensus 54 k~k~~~~~Gi~~~~~~l~~~---~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~KDVDGl~~~n~g- 129 (284)
T PRK14177 54 KVKACHKVGMGSEMIRLKEQ---TTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALEKDVDGVTTLSFG- 129 (284)
T ss_pred HHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccccCChhhHH-
Confidence 34566678888765433221 1223444444 3456789999988832 21 12222211 011233322222
Q ss_pred hhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeee
Q 023179 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
.|- . |-. .+.| .|+.+.++.|..+. ..|++++++ ||+....-|...|.++|++|+.+.-.+.
T Consensus 130 ----~l~-~------g~~-~~~P--cTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~- 194 (284)
T PRK14177 130 ----KLS-M------GVE-TYLP--CTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQ- 194 (284)
T ss_pred ----HHH-c------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC-
Confidence 111 1 322 2444 47888887776654 378888777 8888888899999999999977664321
Q ss_pred cCCCCcHHHHHHcCCCCEEEEeCh
Q 023179 214 PVHHVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 214 ~~~~~~~~~~~~~~~~d~IvftS~ 237 (286)
+ ..+. ..+.|+|+..-+
T Consensus 195 ---~-l~~~---~~~ADIvIsAvG 211 (284)
T PRK14177 195 ---N-LPSI---VRQADIIVGAVG 211 (284)
T ss_pred ---C-HHHH---HhhCCEEEEeCC
Confidence 1 1111 346777775444
No 188
>PRK10537 voltage-gated potassium channel; Provisional
Probab=74.06 E-value=49 Score=31.46 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=60.8
Q ss_pred CEEEEEcCCCChhHHHHHHHhCCCeeEEEEee----------eeecCCCCcHHHHHH--cCCCCEEEEeChHHHHHHHHH
Q 023179 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTY----------TTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSWVNL 246 (286)
Q Consensus 179 ~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY----------~~~~~~~~~~~~~~~--~~~~d~IvftS~sav~~~~~~ 246 (286)
+++++++...-...+.+.|+++|.+|.-+.-- ....-+...++.+++ +++.++|+.++.+-.++.+-.
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~iv 320 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFVV 320 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHH
Confidence 46666666666666777777776665433310 000011122344544 368899999888777666544
Q ss_pred hcccc-CCCceEE--EeCHHHHHHHHHcCCCeEEeCC
Q 023179 247 ISDTE-QWSNSVA--CIGETTASAAKRLGLKNVYYPT 280 (286)
Q Consensus 247 ~~~~~-~~~~~iv--~IG~~Ta~~l~~~G~~~v~~~~ 280 (286)
+.... ..+.+++ +-.+.-.+.+++.|...++.|.
T Consensus 321 L~ar~l~p~~kIIa~v~~~~~~~~L~~~GaD~VIsp~ 357 (393)
T PRK10537 321 LAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMIFSPQ 357 (393)
T ss_pred HHHHHhCCCCcEEEEECCHHHHHHHHhcCCCEEECHH
Confidence 33211 1234444 5588889999999999887775
No 189
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=73.60 E-value=32 Score=32.76 Aligned_cols=104 Identities=10% Similarity=0.044 Sum_probs=59.4
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeee--------------ecCCCCcHHHHHH--cCCCCEEEEeChHHH
Q 023179 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT--------------EPVHHVDQTVLKQ--ALSIPVVAVASPSAV 240 (286)
Q Consensus 177 ~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~--------------~~~~~~~~~~~~~--~~~~d~IvftS~sav 240 (286)
..++++++++..-...+.+.|.+.|.+|.-+..-.. ..-+....+.+++ ..+.++|+.++++.-
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~ 309 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE 309 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence 457899998877778899999999988855522110 0111111233433 357888888877544
Q ss_pred HHHHHHh--ccccCCCceEEEeCHHHHHHHHHcCCCeEEeCC
Q 023179 241 RSWVNLI--SDTEQWSNSVACIGETTASAAKRLGLKNVYYPT 280 (286)
Q Consensus 241 ~~~~~~~--~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v~~~~ 280 (286)
.+..-.. +..+...+-+.+-.+.-.+.++.+|...++.|+
T Consensus 310 ~n~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~g~~~vi~p~ 351 (453)
T PRK09496 310 ANILSSLLAKRLGAKKVIALVNRPAYVDLVEGLGIDIAISPR 351 (453)
T ss_pred HHHHHHHHHHHhCCCeEEEEECCcchHHHHHhcCCCEEECHH
Confidence 4443322 221111222334455666777888877665543
No 190
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.59 E-value=35 Score=30.88 Aligned_cols=152 Identities=16% Similarity=0.089 Sum_probs=81.2
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
.+..++.|+++..+-+-+.. ..+++.+.+ +...+.|.|++--|---..-.+.+.+.-.....+=.+.+.-...|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l 130 (278)
T PRK14172 54 EKVANSLGIDFKKIKLDESI---SEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKF 130 (278)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcccccCccCHhhHHHH
Confidence 45666778887654442221 223344444 345678999998873211101111111111111222222221111
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCc
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD 219 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~ 219 (286)
- . |-. .+.| .|+.+.++.|..+. ..|++++++ ||.....-|...|.++|++|+.+.-.+. + .
T Consensus 131 ~-~------g~~-~~~P--cTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~----~-l 195 (278)
T PRK14172 131 Y-K------GEK-CFLP--CTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTK----N-L 195 (278)
T ss_pred h-C------CCC-CCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC----C-H
Confidence 1 1 322 2444 57888887776653 378888887 7888888899999999999977764321 1 1
Q ss_pred HHHHHHcCCCCEEEEeChH
Q 023179 220 QTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 220 ~~~~~~~~~~d~IvftS~s 238 (286)
.+. ..+.|+|+..-+.
T Consensus 196 ~~~---~~~ADIvIsAvGk 211 (278)
T PRK14172 196 KEV---CKKADILVVAIGR 211 (278)
T ss_pred HHH---HhhCCEEEEcCCC
Confidence 111 2467777665443
No 191
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.36 E-value=30 Score=31.66 Aligned_cols=125 Identities=14% Similarity=0.081 Sum_probs=70.1
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHH--HHH--HHHHHHHH-cCCCCcEEEEECh
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AGS--VFLEAWKE-AGTPNVRIGVVGA 136 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~--av~--~~~~~l~~-~~~~~~~i~aVG~ 136 (286)
-.+..++.|+++..+-+-+.. ..+++.+.+ +...+.|.|++--|- ... ..++.+.- ...|+..-.-+|
T Consensus 53 k~k~a~~~Gi~~~~~~l~~~~---~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~KDVDGl~~~n~g- 128 (296)
T PRK14188 53 KGKQTKEAGMASFEHKLPADT---SQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAG- 128 (296)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcccccccCChhhHH-
Confidence 345566779886644332221 223444444 344678999998883 222 11221110 011333322222
Q ss_pred hhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEEc-CCCChhHHHHHHHhCCCeeEEE
Q 023179 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPA-SAKASNEIEEGLSNRGFEVVRL 207 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~~-g~~~~~~L~~~L~~~G~~V~~~ 207 (286)
.|- . |- ..+.| .|+.++++.|..+. ..|++++++. +.....-|...|.+.|++|..+
T Consensus 129 ----~l~-~------~~-~~~~P--cTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~ 188 (296)
T PRK14188 129 ----RLA-T------GE-TALVP--CTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIA 188 (296)
T ss_pred ----HHh-C------CC-CCCcC--CCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEE
Confidence 111 1 31 12444 57888887776553 3789999996 7777888999999999887655
No 192
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.20 E-value=36 Score=30.97 Aligned_cols=149 Identities=17% Similarity=0.082 Sum_probs=82.2
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH--HH--HHHHHHHHcCCCCcEEEEEChhh
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--GS--VFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~a--v~--~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
.+..++.|+++..+-+-+.. ..+++.+.+ +.....|.|++--|-- .. .+++.+. ....+=.+.+.-
T Consensus 51 ~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~----p~KDVDGl~~~N 123 (287)
T PRK14173 51 DRQAKALGLRSQVEVLPEST---SQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAID----PLKDVDGFHPLN 123 (287)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccC----ccccccccChhh
Confidence 44566778887654442221 223444444 3446789999998832 21 1222211 111121222221
Q ss_pred HHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeecC
Q 023179 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (286)
.-.|- . |-. .+.| .|+.+.++.|..+. ..|++++++ |++....-|...|..+|++|+.+.-.+.
T Consensus 124 ~g~l~-~------~~~-~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~--- 190 (287)
T PRK14173 124 VGRLW-M------GGE-ALEP--CTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQ--- 190 (287)
T ss_pred hHHHh-c------CCC-CCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCC---
Confidence 11111 1 211 2444 57888887776553 268888877 7888888899999999999876654331
Q ss_pred CCCcHHHHHHcCCCCEEEEeChHH
Q 023179 216 HHVDQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 216 ~~~~~~~~~~~~~~d~IvftS~sa 239 (286)
+ .++ ...+.|+|+..-+..
T Consensus 191 -~-l~~---~~~~ADIvIsAvGkp 209 (287)
T PRK14173 191 -D-LPA---VTRRADVLVVAVGRP 209 (287)
T ss_pred -C-HHH---HHhhCCEEEEecCCc
Confidence 1 111 235788888776554
No 193
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=72.72 E-value=23 Score=30.37 Aligned_cols=46 Identities=17% Similarity=0.029 Sum_probs=34.4
Q ss_pred CCHHHHHHhcccC-----------CCCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEE
Q 023179 162 ATGKILASELPKN-----------GKKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRL 207 (286)
Q Consensus 162 ~~~e~L~~~L~~~-----------~~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~ 207 (286)
.|+.+.++.|... ...|++++++ ||+....-|...|.++|++|..+
T Consensus 35 CTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~ 92 (197)
T cd01079 35 CTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSV 92 (197)
T ss_pred CCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEE
Confidence 4566665555432 2367888777 88888888999999999999877
No 194
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.46 E-value=37 Score=30.90 Aligned_cols=149 Identities=14% Similarity=0.068 Sum_probs=82.8
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeCHH--HHHH--HHHHHHH-cCCCCcEEEEEChh
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPE--AGSV--FLEAWKE-AGTPNVRIGVVGAG 137 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~---l~~~~~~d~IvFTS~~--av~~--~~~~l~~-~~~~~~~i~aVG~~ 137 (286)
.+..++.|+++..+-+-+.. ..+++.+. |+.....|.|+.--|- .++. .++.+.- ...|+..-+-.|
T Consensus 48 ~k~~~~~Gi~~~~~~l~~~~---t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~KDVDGl~p~n~g-- 122 (287)
T PRK14181 48 VKKATDLGMVSKAHRLPSDA---TLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMG-- 122 (287)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcccCcccCChhhHH--
Confidence 45566779887654442221 12334444 4445678999998883 3321 2222110 011233322222
Q ss_pred hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhC----CCeeEEEEee
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNR----GFEVVRLNTY 210 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~----G~~V~~~~vY 210 (286)
.|- . |-...+.| .|+.++++.|..+. ..|++++++ ||+....-|...|.++ |++|+.+.-+
T Consensus 123 ---~l~-~------g~~~~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~ 190 (287)
T PRK14181 123 ---KLL-L------GETDGFIP--CTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ 190 (287)
T ss_pred ---HHh-c------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC
Confidence 111 1 32112444 57888888776653 378898887 8888888899999888 7888765543
Q ss_pred eeecCCCCcHHHHHHcCCCCEEEEeChHH
Q 023179 211 TTEPVHHVDQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~d~IvftS~sa 239 (286)
+. + .++ ...+.|+|+..-+..
T Consensus 191 T~----~-l~~---~~~~ADIvV~AvG~p 211 (287)
T PRK14181 191 SE----N-LTE---ILKTADIIIAAIGVP 211 (287)
T ss_pred CC----C-HHH---HHhhCCEEEEccCCc
Confidence 31 1 111 235788888766554
No 195
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.25 E-value=35 Score=31.20 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=79.7
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH--HH--HHHHHHHH-cCCCCcEEEEECh
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--GS--VFLEAWKE-AGTPNVRIGVVGA 136 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~a--v~--~~~~~l~~-~~~~~~~i~aVG~ 136 (286)
-.+..++.|+++..+-+ ......+++.+.+ +.....|.|++--|-- .. ..++.+.. ...|+..-+-.|.
T Consensus 54 k~k~~~~~Gi~~~~~~l---~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~ 130 (297)
T PRK14168 54 KIKTAHRLGFHEIQDNQ---SVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGR 130 (297)
T ss_pred HHHHHHHcCCEEEEEEC---CCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCccccccccChhhHHH
Confidence 34556677888764332 2111223444444 3456789999988832 11 11221110 0112332222221
Q ss_pred hhHHHHHHhhhccCCCC-ceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhC----CCeeEEEE
Q 023179 137 GTASIFEEVIQSSKCSL-DVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNR----GFEVVRLN 208 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~-~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~----G~~V~~~~ 208 (286)
|- . |- ...+.| .|+.++++.|.... ..|++++++ |++....-|...|.++ |++|..+.
T Consensus 131 -----l~-~------~~~~~~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~h 196 (297)
T PRK14168 131 -----LM-I------GGDEVKFLP--CTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVH 196 (297)
T ss_pred -----Hh-c------CCCCCCCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEec
Confidence 11 1 21 122444 57888887776653 378888887 8888888899999887 68887654
Q ss_pred eeeeecCCCCcHHHHHHcCCCCEEEEeCh
Q 023179 209 TYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 209 vY~~~~~~~~~~~~~~~~~~~d~IvftS~ 237 (286)
-.+. + .++ ...+.|+|+...+
T Consensus 197 s~T~----~-l~~---~~~~ADIvVsAvG 217 (297)
T PRK14168 197 TRSK----N-LAR---HCQRADILIVAAG 217 (297)
T ss_pred CCCc----C-HHH---HHhhCCEEEEecC
Confidence 4321 1 111 2357888887554
No 196
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=72.22 E-value=65 Score=27.95 Aligned_cols=190 Identities=15% Similarity=0.155 Sum_probs=104.0
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEece---------------EEeeeCCCchHHHHHHhcCCCccEEEEeCHHH-H
Q 023179 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPL---------------IQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-G 114 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~---------------~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a-v 114 (286)
|+|+|.--..-+..+++.|.+.|.++.-+-. .-+.-..........+ .+.++|.+|..+.+- +
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~a-gi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEA-GIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhc-CCCcCCEEEEeeCCCHH
Confidence 3455555554556677777777766653211 1111111112222222 367899999988884 4
Q ss_pred HHHHHHHH--HcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCC------C--CCEEEEE
Q 023179 115 SVFLEAWK--EAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK------K--KCTVLYP 184 (286)
Q Consensus 115 ~~~~~~l~--~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~------~--~~rvL~~ 184 (286)
..++-.+. +.+.+.+-.=+-.+.-.+.+++. |+...+.|+...+..|...+..... . +..++..
T Consensus 80 N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~------g~~~ii~Pe~~~~~~l~~~i~~p~~~~~~~~~~~~~~~~~~ 153 (225)
T COG0569 80 NSVLALLALKEFGVPRVIARARNPEHEKVLEKL------GADVIISPEKLAAKRLARLIVTPGALDVLELAGGDAEVIEE 153 (225)
T ss_pred HHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHc------CCcEEECHHHHHHHHHHHHhcCCChheEEeecCCcceEEEE
Confidence 44433332 23445555556777788999998 9888888888777777766643320 1 1233322
Q ss_pred cC----CCChhHHHHHHHhCCCeeEEEEeeeee--cCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhcc
Q 023179 185 AS----AKASNEIEEGLSNRGFEVVRLNTYTTE--PVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISD 249 (286)
Q Consensus 185 ~g----~~~~~~L~~~L~~~G~~V~~~~vY~~~--~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~ 249 (286)
.- ......|.+.=-.....+..+.+|+.. .........++ ..--++++.++..++.|.+.+..
T Consensus 154 ~v~~~~~~~g~~L~el~~~~~~~~~vvai~r~~~~~~~p~g~~~l~--~gD~l~v~~~~~~i~~~~~~~~~ 222 (225)
T COG0569 154 KVAEDSPLAGKTLRELDLRLPYDVNVIAIKRGGNELIIPRGDTTLE--AGDRLIVIGAPEALREVEELLGG 222 (225)
T ss_pred EecCCCccCCcCHHHhcccCCCCcEEEEEecCCCceecCCCCCEec--CCCEEEEEEcHHHHHHHHHHhcc
Confidence 21 222333333321122466678888875 22222222221 34456677888889988887653
No 197
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=72.13 E-value=14 Score=28.87 Aligned_cols=73 Identities=11% Similarity=0.221 Sum_probs=40.6
Q ss_pred EEEeCCCCchHHH----HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---H-H-----HHHHH
Q 023179 53 VVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A-G-----SVFLE 119 (286)
Q Consensus 53 VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~---a-v-----~~~~~ 119 (286)
|++....+....+ .+.|.+.|+++..+++-+..+ . .+..+|.|||-||. + + ..|++
T Consensus 3 Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~----~-------~l~~~d~iilgspty~~g~~p~~~~~~f~~ 71 (140)
T TIGR01753 3 IVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADA----E-------DLLSYDAVLLGCSTWGDEDLEQDDFEPFFE 71 (140)
T ss_pred EEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCH----H-------HHhcCCEEEEEcCCCCCCCCCcchHHHHHH
Confidence 3444444444444 455556677776555432211 1 23458999999876 2 2 35666
Q ss_pred HHHHcCCCCcEEEEECh
Q 023179 120 AWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 120 ~l~~~~~~~~~i~aVG~ 136 (286)
.+....+.+.+++++|-
T Consensus 72 ~l~~~~~~gk~~~vfgt 88 (140)
T TIGR01753 72 ELEDIDLGGKKVALFGS 88 (140)
T ss_pred HhhhCCCCCCEEEEEec
Confidence 55554456667766663
No 198
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=71.85 E-value=95 Score=29.69 Aligned_cols=197 Identities=9% Similarity=0.021 Sum_probs=99.7
Q ss_pred CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cCCCCcEEEEECh-h
Q 023179 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVGA-G 137 (286)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~-~~~~~~~i~aVG~-~ 137 (286)
.+..++.+.|++.|+++.... ......+++ .+..+..+-+..++.+...+.+.+++ .+.+-...--+|- .
T Consensus 185 ~d~~el~~lL~~~Gi~v~~~~----~~~~t~eei----~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~~~~p~Gi~~ 256 (421)
T cd01976 185 GDAWASRILLEEMGLRVVAQW----SGDGTLNEM----ENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWMEYNFFGPTK 256 (421)
T ss_pred ccHHHHHHHHHHcCCeEEEEe----CCCCCHHHH----HhcccCCEEEEECcHHHHHHHHHHHHHhCCcEEecccCCHHH
Confidence 355789999999999998322 111222333 34566667777777666555666654 2332211112453 4
Q ss_pred hHHHHHHhhhccCCCCceeccCCC------CCHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEe
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSK------ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~------~~~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~v 209 (286)
|.+.|++..+.- |.. ++++ ..-+.+.+.|... ...|+|+++..|......+...|.+.|.+|..+-+
T Consensus 257 t~~~l~~ia~~~--g~~---~~~~~e~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g~ 331 (421)
T cd01976 257 IAESLRKIAAYF--DDE---ITAKTEEVIAEYKPAMEAVIAKYRPRLEGKTVMLYVGGLRPRHYIGAYEDLGMEVVGTGY 331 (421)
T ss_pred HHHHHHHHHHHh--Cch---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEEe
Confidence 666666652110 322 1111 0011133333322 23789999887766667778899999999986555
Q ss_pred eeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeE
Q 023179 210 YTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 276 (286)
Q Consensus 210 Y~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v 276 (286)
+... +...+..++.+. .+.+++-.+ ....+.+.+.+. ...++.-|..-...++++|+--+
T Consensus 332 ~~~~--~~~~~~~~~~~~-~~~~i~~~~-d~~e~~~~i~~~---~pDliig~~~~~~~a~k~giP~~ 391 (421)
T cd01976 332 EFAH--RDDYERTEVIPK-EGTLLYDDV-THYELEEFVKRL---KPDLIGSGIKEKYVFQKMGIPFR 391 (421)
T ss_pred ecCC--HHHHhhHHhhcC-CceEEEcCC-CHHHHHHHHHHh---CCCEEEecCcchhhhhhcCCCeE
Confidence 3221 111122222222 244444432 222233333321 23355455555555666676543
No 199
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.70 E-value=52 Score=30.04 Aligned_cols=150 Identities=13% Similarity=0.089 Sum_probs=81.0
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH--HHHH--HHHHHH-cCCCCcEEEEECh
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--GSVF--LEAWKE-AGTPNVRIGVVGA 136 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~a--v~~~--~~~l~~-~~~~~~~i~aVG~ 136 (286)
-.+..++.|+++..+-+-+.. +.+++.+.+ +.....|.|++--|-- +... ++.+.. ...|+..-.-.|.
T Consensus 52 k~k~~~~~Gi~~~~~~l~~~~---~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~KDVDGl~~~n~g~ 128 (295)
T PRK14174 52 KAKSCKEIGMNSTVIELPADT---TEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGR 128 (295)
T ss_pred HHHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCccccccccChhhHHH
Confidence 345566779887654442221 223444444 3456789999988732 2211 111110 0112332222221
Q ss_pred hhHHHHHHhhhccCCCC-ceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHh----CCCeeEEEE
Q 023179 137 GTASIFEEVIQSSKCSL-DVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSN----RGFEVVRLN 208 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~-~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~----~G~~V~~~~ 208 (286)
|- . |. +..+.| .|+.++++.|..+. ..|++++++ ||+....-|...|.+ +|++|..+.
T Consensus 129 -----l~-~------~~~~~~~~P--cTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~h 194 (295)
T PRK14174 129 -----LV-M------GHLDKCFVS--CTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICH 194 (295)
T ss_pred -----Hh-c------CCCCCCcCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEe
Confidence 11 1 21 122444 57888887777554 378898888 777777777777766 688886665
Q ss_pred eeeeecCCCCcHHHHHHcCCCCEEEEeChHH
Q 023179 209 TYTTEPVHHVDQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 209 vY~~~~~~~~~~~~~~~~~~~d~IvftS~sa 239 (286)
..+.. +.+.....|+|+-.-+..
T Consensus 195 s~t~~--------l~~~~~~ADIvI~Avg~~ 217 (295)
T PRK14174 195 SATKD--------IPSYTRQADILIAAIGKA 217 (295)
T ss_pred CCchh--------HHHHHHhCCEEEEecCcc
Confidence 43311 122235788888877555
No 200
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=71.57 E-value=15 Score=30.31 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=22.2
Q ss_pred HHHHcCCCCEEEEeCh-------HHHHHHHHHhcc
Q 023179 222 VLKQALSIPVVAVASP-------SAVRSWVNLISD 249 (286)
Q Consensus 222 ~~~~~~~~d~IvftS~-------sav~~~~~~~~~ 249 (286)
..+.+...|+|+|.|| ..+|+|++.+..
T Consensus 62 ~~~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~~ 96 (174)
T TIGR03566 62 ILQAIESADLLVVGSPVYRGSYTGLFKHLFDLVDP 96 (174)
T ss_pred HHHHHHHCCEEEEECCcCcCcCcHHHHHHHHhcCH
Confidence 4444578999999998 688999998753
No 201
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.52 E-value=44 Score=30.37 Aligned_cols=149 Identities=15% Similarity=0.111 Sum_probs=79.9
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
-.+.+++.|+++..+-+-+. ...+++.+.+ +.....|.|+.--|- .... +.+.+.-.....+=.+.+.-.
T Consensus 52 k~k~~~~~Gi~~~~~~l~~~---~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~--~~i~~~I~p~KDVDGl~~~N~ 126 (286)
T PRK14184 52 KERACEDAGIVSEAFRLPAD---TTQEELEDLIAELNARPDIDGILLQLPLPKGLDS--QRCLELIDPAKDVDGFHPENM 126 (286)
T ss_pred HHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCH--HHHHhccCcccCcccCCHhhH
Confidence 34566778988875443222 1223444444 345678999988772 2221 111111111111111222211
Q ss_pred HHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHh----CCCeeEEEEeeee
Q 023179 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSN----RGFEVVRLNTYTT 212 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~----~G~~V~~~~vY~~ 212 (286)
-.|- . |- ..+.| .|+.++++.|..+. ..|++++++ ||+....-|...|.+ +|++|..+...+.
T Consensus 127 g~l~-~------~~-~~~~P--cTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~ 196 (286)
T PRK14184 127 GRLA-L------GL-PGFRP--CTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTP 196 (286)
T ss_pred HHHh-C------CC-CCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCch
Confidence 1111 1 21 12444 57888887777654 378888877 888888889999988 7888866654321
Q ss_pred ecCCCCcHHHHHHcCCCCEEEEeC
Q 023179 213 EPVHHVDQTVLKQALSIPVVAVAS 236 (286)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~IvftS 236 (286)
.+.+.....|+|+-.-
T Consensus 197 --------~l~~~~~~ADIVI~Av 212 (286)
T PRK14184 197 --------DLAEECREADFLFVAI 212 (286)
T ss_pred --------hHHHHHHhCCEEEEec
Confidence 1122235777777665
No 202
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=71.41 E-value=40 Score=31.67 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=52.1
Q ss_pred HHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCc-eeccCCCCCHHHHHHhcccCCCCCCEEEEEc-----CCCCh
Q 023179 117 FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLD-VAFSPSKATGKILASELPKNGKKKCTVLYPA-----SAKAS 190 (286)
Q Consensus 117 ~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~-~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~-----g~~~~ 190 (286)
+++.+++....+..|.+=|+.=.++|++. |++ ..+.-.....-..++.|.+.. -++|++.. |....
T Consensus 13 ~~~~l~~~~~~~~~ilveg~~d~~~l~~l------gi~g~~i~~s~~p~~~cad~ii~~g--i~rVVi~~D~d~~G~~~~ 84 (360)
T PRK14719 13 IIDDLKLLAEKGIPILVEGPNDILSLKNL------KINANFITVSNTPVFQIADDLIAEN--ISEVILLTDFDRAGRVYA 84 (360)
T ss_pred HHHHHHHhhhCCCEEEEEcchHHHHHHHc------CCCCcEEEEeCCchHHHHHHHHHcC--CCEEEEEECCCCCCCccc
Confidence 34445444445799999999999999999 985 222222222333556665432 26887766 33333
Q ss_pred hHHHHHHHhCCCeeE
Q 023179 191 NEIEEGLSNRGFEVV 205 (286)
Q Consensus 191 ~~L~~~L~~~G~~V~ 205 (286)
..+.+.|+++|+.|+
T Consensus 85 ~~~~~~L~~aGi~V~ 99 (360)
T PRK14719 85 KNIMEEFQSRGIKVN 99 (360)
T ss_pred hHHHHHHHHCCCEEE
Confidence 356899999999994
No 203
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=71.22 E-value=46 Score=28.68 Aligned_cols=94 Identities=12% Similarity=0.103 Sum_probs=55.5
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHHcC
Q 023179 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAG 125 (286)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l~~~~ 125 (286)
++||+....+ -...+...|++.|+.+..+|...... ..... ....+|.||++ ++.....-.+.++...
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~----~~~~~---~~~~~dgliisGGp~~~~~~~~~~~~i~~~~ 73 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRL----ADEAA---VAAQFDGVLLSPGPGTPERAGASIDMVRACA 73 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCH----HHHHH---hhcCCCEEEECCCCCChhhcchHHHHHHHHH
Confidence 4666665543 34578889999999999887753211 11111 13579999998 6654432223333222
Q ss_pred CCCcEEEEEChhhHHHHHHhhhccCCCCceec
Q 023179 126 TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAF 157 (286)
Q Consensus 126 ~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~ 157 (286)
..+++++.|.-+-.-..... |-++.-
T Consensus 74 ~~~~PiLGIC~G~Qlla~a~------GG~v~~ 99 (214)
T PRK07765 74 AAGTPLLGVCLGHQAIGVAF------GATVDR 99 (214)
T ss_pred hCCCCEEEEccCHHHHHHHh------CCEEee
Confidence 23688876666655555555 776643
No 204
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=70.84 E-value=1e+02 Score=29.50 Aligned_cols=201 Identities=15% Similarity=0.102 Sum_probs=103.6
Q ss_pred chHHHHHHHHhCCCcEEEeceEEee------------eCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cCCC
Q 023179 61 KNGKLIKALAKHRIDCLELPLIQHA------------QGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTP 127 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~------------~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~-~~~~ 127 (286)
+..++.+.|++.|+++..+|.+... +..+ ..+++ +++..+...-+..++.....+.+.+++ .+.+
T Consensus 170 d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg-~~~e~-i~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP 247 (428)
T cd01965 170 DVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGG-TTLEE-IRDAGNAKATIALGEYSGRKAAKALEEKFGVP 247 (428)
T ss_pred CHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCC-CcHHH-HHHhccCcEEEEEChhhhHHHHHHHHHHHCCC
Confidence 4689999999999999998865211 0011 22323 335667777788888444445666654 3333
Q ss_pred CcEEE-EEC-hhhHHHHHHhhhccCCCCceeccCCCC--CHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCC
Q 023179 128 NVRIG-VVG-AGTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRG 201 (286)
Q Consensus 128 ~~~i~-aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~--~~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~L~~~G 201 (286)
-...- -+| +.|.+.|++..+.- |... |+.. --+.+.+.+.+. ...|+|+.+..+....-.|...|.+.|
T Consensus 248 ~~~~~~p~G~~~t~~~l~~l~~~~--g~~~---~~~~~~~r~~~~~~~~~~~~~l~gk~v~i~~~~~~~~~l~~~L~e~G 322 (428)
T cd01965 248 YILFPTPIGLKATDEFLRALSKLS--GKPI---PEELERERGRLLDAMLDSHFYLGGKRVAIAGDPDLLLGLSRFLLEMG 322 (428)
T ss_pred eeecCCCcChHHHHHHHHHHHHHH--CCCC---CHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcChHHHHHHHHHHHHcC
Confidence 22221 355 45666666652111 3322 2110 011122222221 236789988876665666889999999
Q ss_pred CeeEEEEeeeeecCCCCcHHH--HHHcCC--CCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeE
Q 023179 202 FEVVRLNTYTTEPVHHVDQTV--LKQALS--IPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 276 (286)
Q Consensus 202 ~~V~~~~vY~~~~~~~~~~~~--~~~~~~--~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v 276 (286)
..|..+.+.... +...+.. ...... .+++.-.....++..++.. +..++.-+......++++|..-+
T Consensus 323 ~~v~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~d~~el~~~i~~~------~pdliig~~~~~~~a~~~~ip~i 393 (428)
T cd01965 323 AEPVAAVTGTDN--PPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEE------PVDLLIGNSHGRYLARDLGIPLV 393 (428)
T ss_pred CcceEEEEcCCC--chhHHHHHHhhhhcCCCceEEECCCHHHHHHHhhcc------CCCEEEECchhHHHHHhcCCCEE
Confidence 999666553322 2211111 111122 2333333443333332221 24455555555666666775543
No 205
>PRK06703 flavodoxin; Provisional
Probab=70.83 E-value=14 Score=29.74 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=36.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH--------HHHHHHHHHHHHcCCCCcEEEEE
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--------EAGSVFLEAWKEAGTPNVRIGVV 134 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~--------~av~~~~~~l~~~~~~~~~i~aV 134 (286)
..+++.|.+.|.++....+-+.. . . .+.++|.|+|-|| ..+..|++.+....+.+.+++++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~----~----~---~l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vf 88 (151)
T PRK06703 20 DLIKVSLDAFDHEVVLQEMDGMD----A----E---ELLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVF 88 (151)
T ss_pred HHHHHHHHhcCCceEEEehhhCC----H----H---HHhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEE
Confidence 34445555667776654432211 0 1 2467899999664 24666777665444556777777
Q ss_pred Ch
Q 023179 135 GA 136 (286)
Q Consensus 135 G~ 136 (286)
|-
T Consensus 89 g~ 90 (151)
T PRK06703 89 GS 90 (151)
T ss_pred cc
Confidence 64
No 206
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.82 E-value=54 Score=29.79 Aligned_cols=138 Identities=10% Similarity=0.062 Sum_probs=74.5
Q ss_pred EEEeCCCCchHHH----HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHH--HHH--HHHHHH
Q 023179 53 VVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AGS--VFLEAW 121 (286)
Q Consensus 53 VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~--av~--~~~~~l 121 (286)
|+..-..+....+ .+..++.|+++..+-+-+. ...+++.+.+ +.....|.|+.--|- ... ..++.+
T Consensus 37 ii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~---~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I 113 (284)
T PRK14179 37 VILVGDNPASQVYVRNKERSALAAGFKSEVVRLPET---ISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAI 113 (284)
T ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhcc
Confidence 4444444433333 3566778988875444222 1223444444 344678999988772 221 122211
Q ss_pred HHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEEcC-CCChhHHHHHHH
Q 023179 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPAS-AKASNEIEEGLS 198 (286)
Q Consensus 122 ~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~~g-~~~~~~L~~~L~ 198 (286)
.....+=.+.+.-...|- . |- ..+.| .|+.+.++.|..+. ..|+++.++.- .....-|...|.
T Consensus 114 ----~p~KDVDGl~~~N~g~l~-~------~~-~~~~P--cTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~ 179 (284)
T PRK14179 114 ----DPKKDVDGFHPMNTGHLW-S------GR-PVMIP--CTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLL 179 (284)
T ss_pred ----CccccccccCHhhHHHHh-C------CC-CCCcC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHH
Confidence 111122222222111111 1 21 12343 57888887776553 37899999854 666777899999
Q ss_pred hCCCeeEEE
Q 023179 199 NRGFEVVRL 207 (286)
Q Consensus 199 ~~G~~V~~~ 207 (286)
+.|++|..+
T Consensus 180 ~~gatVtv~ 188 (284)
T PRK14179 180 DKNATVTLT 188 (284)
T ss_pred HCCCEEEEE
Confidence 999988765
No 207
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=70.49 E-value=15 Score=29.15 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=49.7
Q ss_pred chHHHHHHHHhCCCcEEEeceEE--ee-eCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEC
Q 023179 61 KNGKLIKALAKHRIDCLELPLIQ--HA-QGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVG 135 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~--~~-~~~~~~~l~~~l~--~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG 135 (286)
....+.+.|+.+|+.+...|... .. ...|..-....++ ....+|.+|+.|.-+ -|...+......+.++.++|
T Consensus 53 ~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~--Df~~~i~~lr~~G~~V~v~~ 130 (149)
T cd06167 53 RQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDS--DFVPLVERLRELGKRVIVVG 130 (149)
T ss_pred hHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCc--cHHHHHHHHHHcCCEEEEEc
Confidence 56889999999999999999875 22 2223221112221 123688888888866 23333332222356666666
Q ss_pred h--hhHHHHHHh
Q 023179 136 A--GTASIFEEV 145 (286)
Q Consensus 136 ~--~Ta~~L~~~ 145 (286)
. .+...|++.
T Consensus 131 ~~~~~s~~L~~~ 142 (149)
T cd06167 131 FEAKTSRELRKA 142 (149)
T ss_pred cCccChHHHHHh
Confidence 5 566777665
No 208
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=70.37 E-value=1e+02 Score=29.51 Aligned_cols=200 Identities=11% Similarity=0.026 Sum_probs=97.9
Q ss_pred hHHHHHHHHhCCCcEEEeceEE------------eee-CCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cCCC
Q 023179 62 NGKLIKALAKHRIDCLELPLIQ------------HAQ-GPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTP 127 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~------------~~~-~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~-~~~~ 127 (286)
..++.+.|++.|+++..+|=+. ..+ ....+++ ++......-+..++.....+.+.+++ .+.+
T Consensus 176 ~~el~~lL~~~Gl~~~~~~d~s~~~d~~~~~~~~~~~gg~~~~~i----~~~~~A~~niv~~~~~~~~~a~~Le~~~giP 251 (435)
T cd01974 176 MREIKRLLELMGVDYTILPDTSDVLDTPADGEYRMYPGGTTLEEL----KDAGNAKATLALQEYATEKTAKFLEKKCKVP 251 (435)
T ss_pred HHHHHHHHHHcCCCEEEecccccccCCCCCCCccccCCCCCHHHH----HhhccCcEEEEECccccHHHHHHHHHHhCCC
Confidence 5899999999999998765211 111 1122332 24455556666666544445555554 3333
Q ss_pred CcEE-EEEC-hhhHHHHHHhhhccCCCCceeccCCC--CCHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCC
Q 023179 128 NVRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRG 201 (286)
Q Consensus 128 ~~~i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~--~~~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~L~~~G 201 (286)
-... +-+| +.|.+.|++..+.- |..+ |+. ..-+.+.+.+.+. ...|+|+.+..+..-.-.|...|.+.|
T Consensus 252 ~~~~~~p~G~~~t~~~l~~l~~~~--g~~~---~~~i~~er~~~~~~~~~~~~~l~gkrv~i~g~~~~~~~la~~L~elG 326 (435)
T cd01974 252 VETLNMPIGVAATDEFLMALSELT--GKPI---PEELEEERGRLVDAMTDSHQYLHGKKFALYGDPDFLIGLTSFLLELG 326 (435)
T ss_pred eeecCCCcChHHHHHHHHHHHHHh--CCCC---CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcChHHHHHHHHHHHHCC
Confidence 2221 1233 34555555542111 4332 111 0111233444332 126789988776555556778999999
Q ss_pred CeeEEEEeeeeecCCCCcHHHHHHcC----CCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeE
Q 023179 202 FEVVRLNTYTTEPVHHVDQTVLKQAL----SIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 276 (286)
Q Consensus 202 ~~V~~~~vY~~~~~~~~~~~~~~~~~----~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v 276 (286)
.+|..+.++... +...++....+. ..+..++..+. ...+.+.+... +..++.-+..-...++++|..-+
T Consensus 327 m~v~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~v~~~~d-~~e~~~~i~~~---~pDliiG~s~~~~~a~~~gip~v 399 (435)
T cd01974 327 MEPVHVLTGNGG--KRFEKEMQALLDASPYGAGAKVYPGKD-LWHLRSLLFTE---PVDLLIGNTYGKYIARDTDIPLV 399 (435)
T ss_pred CEEEEEEeCCCC--HHHHHHHHHHHhhcCCCCCcEEEECCC-HHHHHHHHhhc---CCCEEEECccHHHHHHHhCCCEE
Confidence 999666654321 111222221122 13444544443 22333333321 23344444444555666776543
No 209
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=70.29 E-value=70 Score=27.46 Aligned_cols=152 Identities=17% Similarity=0.093 Sum_probs=79.8
Q ss_pred CCccEEEEeCHH-HHHHHHHHHHHcCCCCcEEEEEChhhHHHHH-HhhhccCCCCceeccCC-CCCHHHHHHhcccCCCC
Q 023179 101 TIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTASIFE-EVIQSSKCSLDVAFSPS-KATGKILASELPKNGKK 177 (286)
Q Consensus 101 ~~~d~IvFTS~~-av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~-~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~ 177 (286)
...|.||..... .+......+.+ .+++++..+......-. .. ..-....+. ....+.+++.+.... .
T Consensus 65 ~~v~~iig~~~~~~~~~~~~~~~~---~~ip~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~ 134 (298)
T cd06268 65 DGVDAVIGPLSSGVALAAAPVAEE---AGVPLISPGATSPALTGKGN------PYVFRTAPSDAQQAAALADYLAEKG-K 134 (298)
T ss_pred CCceEEEcCCcchhHHhhHHHHHh---CCCcEEccCCCCcccccCCC------ceEEEcccCcHHHHHHHHHHHHHhc-C
Confidence 357888765433 33334454444 35667666554322211 11 111112222 223455666665543 2
Q ss_pred CCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeCh-HHHHHHHHHhcc
Q 023179 178 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSWVNLISD 249 (286)
Q Consensus 178 ~~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS~-sav~~~~~~~~~ 249 (286)
.+++.++.++.. .+.+.+.+++.|+++.....|.... ......+..+ ...|+|++.+. ..+..++..+.+
T Consensus 135 ~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~--~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~ 212 (298)
T cd06268 135 VKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGA--TDFSPLIAKLKAAGPDAVFLAGYGGDAALFLKQARE 212 (298)
T ss_pred CCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCC--ccHHHHHHHHHhcCCCEEEEccccchHHHHHHHHHH
Confidence 468888765542 4566678889998876655554321 2222233322 35788877765 666777777765
Q ss_pred ccCCCceEEEeCHHHH
Q 023179 250 TEQWSNSVACIGETTA 265 (286)
Q Consensus 250 ~~~~~~~iv~IG~~Ta 265 (286)
.+. +.+++..+....
T Consensus 213 ~g~-~~~~~~~~~~~~ 227 (298)
T cd06268 213 AGL-KVPIVGGDGAAA 227 (298)
T ss_pred cCC-CCcEEecCccCC
Confidence 432 566665544433
No 210
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=70.13 E-value=43 Score=24.96 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=44.5
Q ss_pred CCEEEEEcCCCChh-----HHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccC
Q 023179 178 KCTVLYPASAKASN-----EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQ 252 (286)
Q Consensus 178 ~~rvL~~~g~~~~~-----~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~ 252 (286)
.+++|++||.+... .+.+.++++|+++. ++.. .. .+.......+|+ ++.+|.....+-+.-.....
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~---v~a~---~~--~~~~~~~~~~Dv-ill~pqi~~~~~~i~~~~~~ 73 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVK---IAAG---SY--GAAGEKLDDADV-VLLAPQVAYMLPDLKKETDK 73 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEE---EEEe---cH--HHHHhhcCCCCE-EEECchHHHHHHHHHHHhhh
Confidence 36899999987533 45677788888642 2222 11 111122357885 56666655544333222222
Q ss_pred CCceEEEeCHHHH
Q 023179 253 WSNSVACIGETTA 265 (286)
Q Consensus 253 ~~~~iv~IG~~Ta 265 (286)
.+.++..|.+..-
T Consensus 74 ~~ipv~~I~~~~Y 86 (95)
T TIGR00853 74 KGIPVEVINGAQY 86 (95)
T ss_pred cCCCEEEeChhhc
Confidence 3579999988543
No 211
>PRK06703 flavodoxin; Provisional
Probab=69.76 E-value=32 Score=27.49 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=29.5
Q ss_pred cCCCCEEEEeCh--------HHHHHHHHHhccccCCCceEEEeCH-------------HHHHHHHHcCCCe
Q 023179 226 ALSIPVVAVASP--------SAVRSWVNLISDTEQWSNSVACIGE-------------TTASAAKRLGLKN 275 (286)
Q Consensus 226 ~~~~d~IvftS~--------sav~~~~~~~~~~~~~~~~iv~IG~-------------~Ta~~l~~~G~~~ 275 (286)
+..+|.|+|-|| ..++.|++.+....+.+.+++++|- ...+.+++.|++.
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~ 116 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAEL 116 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEE
Confidence 346777777553 3567777766543333455666642 1566677778764
No 212
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=69.76 E-value=1.1e+02 Score=29.71 Aligned_cols=201 Identities=12% Similarity=0.081 Sum_probs=105.6
Q ss_pred eEEEeCC--CCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHH-HHcCCC-
Q 023179 52 KVVVTRE--RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAW-KEAGTP- 127 (286)
Q Consensus 52 ~VLitR~--~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l-~~~~~~- 127 (286)
.|.+.-+ ......+...|++.|++|..+.. ....+++. .+..-..++.+||..-+.. .++ ++.+.+
T Consensus 195 ~vnl~G~~~~~~~~~i~~lL~~lGI~v~~~lp-----~~~~~eL~----~~~~~~~~c~~~P~ls~aa-~~Le~~~gvp~ 264 (457)
T CHL00073 195 PLVLFGSLPSTVASQLTLELKRQGIKVSGWLP-----SQRYTDLP----SLGEGVYVCGVNPFLSRTA-TTLMRRRKCKL 264 (457)
T ss_pred cEEEEEecCcccHHHHHHHHHHcCCeEeEEeC-----CCCHHHHH----hhCcccEEEEcCcchHHHH-HHHHHHhCCce
Confidence 5555533 34567899999999999973222 11223332 3444567777775444322 223 223322
Q ss_pred -CcEEEEECh-hhHHHHHHhhhccCCCCceeccCCCC--CHHHHHHhcccCC--CCCCEEEEEcCCCChhHHHHHHHhCC
Q 023179 128 -NVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRG 201 (286)
Q Consensus 128 -~~~i~aVG~-~Ta~~L~~~~~~~~~G~~~~~~~~~~--~~e~L~~~L~~~~--~~~~rvL~~~g~~~~~~L~~~L~~~G 201 (286)
..+ +-+|. .|.+.|++..+.- |+. |+.. --..+.+.|.... ..|||+.+..+..-.-.|...|.+.|
T Consensus 265 ~~~P-~PiGi~~Td~fLr~Ia~~~--G~~----pe~l~~Er~rl~dal~d~~~~L~GKrvai~Gdp~~~i~LarfL~elG 337 (457)
T CHL00073 265 IGAP-FPIGPDGTRAWIEKICSVF--GIE----PQGLEEREEQIWESLKDYLDLVRGKSVFFMGDNLLEISLARFLIRCG 337 (457)
T ss_pred eecC-CcCcHHHHHHHHHHHHHHh--CcC----HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHHCC
Confidence 222 22664 5677777653111 432 2211 1112333343321 27899998888677777899999999
Q ss_pred CeeEEEEeeeeecCCCC---cHHHHHHc-C---CCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCC
Q 023179 202 FEVVRLNTYTTEPVHHV---DQTVLKQA-L---SIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLK 274 (286)
Q Consensus 202 ~~V~~~~vY~~~~~~~~---~~~~~~~~-~---~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~ 274 (286)
++|..+-+-. ..+.. ..+.+..+ . ..+.+++..+. ...+.+.+.+. ..-++.-|-..+..+...|+.
T Consensus 338 mevV~vgt~~--~~~~~~~~d~~~l~~~~~~~~~~~~vive~~D-~~el~~~i~~~---~pDLlIgG~~~~~Pl~~~G~p 411 (457)
T CHL00073 338 MIVYEIGIPY--MDKRYQAAELALLEDTCRKMNVPMPRIVEKPD-NYNQIQRIREL---QPDLAITGMAHANPLEARGIN 411 (457)
T ss_pred CEEEEEEeCC--CChhhhHHHHHHHHHHhhhcCCCCcEEEeCCC-HHHHHHHHhhC---CCCEEEccccccCchhhcCCc
Confidence 9987773321 11221 11223221 1 13455566554 44455555432 344555555677777777875
Q ss_pred e
Q 023179 275 N 275 (286)
Q Consensus 275 ~ 275 (286)
.
T Consensus 412 ~ 412 (457)
T CHL00073 412 T 412 (457)
T ss_pred c
Confidence 4
No 213
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=69.62 E-value=20 Score=35.02 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=39.6
Q ss_pred CCCCCCeEEEeCCCC-----------------chHHHHHHHHhCCCcEEEec--e-------EEeeeCCCchHHHHHHhc
Q 023179 46 ASNSNPKVVVTRERG-----------------KNGKLIKALAKHRIDCLELP--L-------IQHAQGPDTDRLSSVLNA 99 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-----------------~~~~l~~~L~~~G~~v~~~P--~-------~~~~~~~~~~~l~~~l~~ 99 (286)
++|.|++||||-+.. .+-.+++.+..+|++|..+- . +++.......++.+++..
T Consensus 252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~~p~~v~~i~V~ta~eM~~av~~ 331 (475)
T PRK13982 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLADPQGVKVIHVESARQMLAAVEA 331 (475)
T ss_pred cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCCCCCCceEEEecCHHHHHHHHHh
Confidence 469999999995432 23678999999999997753 1 122222223445555533
Q ss_pred CCCccEEEEeC
Q 023179 100 DTIFDWIIITS 110 (286)
Q Consensus 100 ~~~~d~IvFTS 110 (286)
...+|.+|++-
T Consensus 332 ~~~~Di~I~aA 342 (475)
T PRK13982 332 ALPADIAIFAA 342 (475)
T ss_pred hCCCCEEEEec
Confidence 33466665543
No 214
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.37 E-value=27 Score=31.70 Aligned_cols=151 Identities=16% Similarity=0.065 Sum_probs=82.2
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
.+..++.|+++..+-+-+.. ..+++.+.+ +.....|.|+.--|- .... ..+.+.-.+...+=.+.+.-..
T Consensus 52 ~k~a~~~Gi~~~~~~l~~~~---t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~--~~i~~~I~p~KDVDGl~~~n~g 126 (282)
T PRK14182 52 RKDCEEVGITSVEHHLPATT---TQAELLALIARLNADPAVHGILVQLPLPKHVDE--RAVLDAISPAKDADGFHPFNVG 126 (282)
T ss_pred HHHHHHcCCEEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCH--HHHHhccCcccCcCCCCHhHHH
Confidence 45566779887655442221 223444444 445678999988773 2221 1111111111111112221111
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeecCCC
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~ 217 (286)
.|- . |-...+.| .|+.++++.|..+. ..|++++++ ||+....-|...|.++|++|..+.-++. +
T Consensus 127 ~l~-~------g~~~~~~P--cTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~----n 193 (282)
T PRK14182 127 ALS-I------GIAGVPRP--CTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTA----D 193 (282)
T ss_pred HHh-C------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC----C
Confidence 111 1 21111333 57888887776543 378888887 8888888899999999999987765432 1
Q ss_pred CcHHHHHHcCCCCEEEEeChH
Q 023179 218 VDQTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 218 ~~~~~~~~~~~~d~IvftS~s 238 (286)
.++ ...+.|+|+..-+.
T Consensus 194 -l~~---~~~~ADIvI~AvGk 210 (282)
T PRK14182 194 -LAG---EVGRADILVAAIGK 210 (282)
T ss_pred -HHH---HHhhCCEEEEecCC
Confidence 111 23578888877664
No 215
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=69.03 E-value=45 Score=33.08 Aligned_cols=102 Identities=10% Similarity=0.077 Sum_probs=60.5
Q ss_pred CEEEEEcCCCChhHHHHHHHhCCCeeEEEEeee------------eecCCCCcHHHHHH--cCCCCEEEEeChHHHHH--
Q 023179 179 CTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT------------TEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRS-- 242 (286)
Q Consensus 179 ~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~------------~~~~~~~~~~~~~~--~~~~d~IvftS~sav~~-- 242 (286)
.++++++...-...+.+.|+++|.+|.-+..=. ...-+...++.+++ .++.|+++.+.++..++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 577777766666778888888887765443211 11111122334444 35889888876654443
Q ss_pred HHHHhccccCCCceEE--EeCHHHHHHHHHcCCCeEEeCCC
Q 023179 243 WVNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPTH 281 (286)
Q Consensus 243 ~~~~~~~~~~~~~~iv--~IG~~Ta~~l~~~G~~~v~~~~~ 281 (286)
.....++.. .+.+++ +-.+...+.+++.|.+.++.|++
T Consensus 498 iv~~~~~~~-~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~ 537 (558)
T PRK10669 498 IVASAREKR-PDIEIIARAHYDDEVAYITERGANQVVMGER 537 (558)
T ss_pred HHHHHHHHC-CCCeEEEEECCHHHHHHHHHcCCCEEEChHH
Confidence 333333321 234444 44777788889999998887754
No 216
>PRK07825 short chain dehydrogenase; Provisional
Probab=68.64 E-value=80 Score=27.51 Aligned_cols=70 Identities=16% Similarity=-0.011 Sum_probs=43.0
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHHHHc
Q 023179 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWKEA 124 (286)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv--FTS~~av~~~~~~l~~~ 124 (286)
+.|++||||-..+ -+..+++.|.++|+++...- . +.+.+.+....+....++. ++++.+++.+++.+.+.
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~-----r--~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGD-----L--DEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEAD 75 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEE-----C--CHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHH
Confidence 4588999997765 35788899999998865321 1 1233333222222233322 47888888888877653
No 217
>TIGR01729 taurine_ABC_bnd taurine ABC transporter, periplasmic binding protein. This model identifies a cluster of ABC transporter periplasmic substrate binding proteins, apparently specific for taurine. Transport systems for taurine (NH2-CH2-CH2-SO3H), sulfonates, and sulfate esters import sulfur when sulfate levels are low. The most closely related proteins outside this family are putative aliphatic sulfonate binding proteins (TIGR01728).
Probab=68.11 E-value=18 Score=32.38 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=45.8
Q ss_pred cccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 42 TSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
+.+...|.|++|.++........+.+.|+++|++...+.+.... . .+....| .-+..|+++...|..
T Consensus 92 I~s~~DLkGK~Igv~~~s~~~~~l~~~L~~~Gl~~~dv~~v~~~---~-~~~~~al-~~G~vDa~~~~~p~~ 158 (300)
T TIGR01729 92 IEKPEDLKGKNVAVPFVSTTHYSLLAALKHWKTDPREVNILNLK---P-PQIVAAW-QRGDIDAAYVWPPAL 158 (300)
T ss_pred CCChhHcCCCEEEeCCCCcHHHHHHHHHHHcCCChhheEEEecC---c-HHHHHHH-HcCCcCEEEEecHHH
Confidence 44556899999999887666667778898899876544333322 1 2344555 358899998888754
No 218
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=67.80 E-value=1.2e+02 Score=29.27 Aligned_cols=197 Identities=12% Similarity=0.063 Sum_probs=97.2
Q ss_pred chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cCCCCcEEEEEC-hhh
Q 023179 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-AGT 138 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~-~~~~~~~i~aVG-~~T 138 (286)
+..++.+.|++.|+++...- ....+.+++ ....+...-+..++.....+.+.+++ .|.+-....-+| +.|
T Consensus 211 d~~el~~lL~~~Gl~v~~~~----~~~~s~eei----~~~~~A~lniv~~~~~~~~~a~~L~e~~GiP~~~~~~~G~~~T 282 (456)
T TIGR01283 211 EFWHVKPLLEKLGIRVLATI----TGDSRYAEV----QTAHRAKLNMVQCSKSMINLARKMEEKYGIPYFEGSFYGIEDT 282 (456)
T ss_pred cHHHHHHHHHHcCCeEEEEe----CCCCcHHHH----HhcccCcEEEEECHhHHHHHHHHHHHHcCCCEEecCCCcHHHH
Confidence 45689999999999998521 111122333 24555666666566555556676754 344322211255 357
Q ss_pred HHHHHHhhhccCCCCce--eccCCC--CCHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeee
Q 023179 139 ASIFEEVIQSSKCSLDV--AFSPSK--ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~--~~~~~~--~~~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
.+.|++..+.- |... ..+++. ..-+.+.+.|..+ ...|+|+.+..+....-.+...|.+.|++|..+-++..
T Consensus 283 ~~~L~~Ia~~l--g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L~Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~t~~~ 360 (456)
T TIGR01283 283 SKALRDIADLF--GDEELLKRTEELIAREEAKIRPALEPYRERLKGKKAAIYTGGVKSWSLVSALQDLGMEVVATGTQKG 360 (456)
T ss_pred HHHHHHHHHHh--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEeeecC
Confidence 77777762110 2110 000000 0011122233222 12678988766654555688899999999876544322
Q ss_pred ecCCCCcHHHHHHcCCCCEEEEeCh--HHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeE
Q 023179 213 EPVHHVDQTVLKQALSIPVVAVASP--SAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 276 (286)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~IvftS~--sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v 276 (286)
.+++. +.+......+.+++..+ ..+..++...+ ..++.-|......+++.|+.-+
T Consensus 361 --~~~d~-~~l~~~~~~~~~v~~~~d~~e~~~~i~~~~------pDl~ig~~~~~~~a~k~giP~i 417 (456)
T TIGR01283 361 --TEEDY-ARIRELMGEGTVMLDDANPRELLKLLLEYK------ADLLIAGGKERYTALKLGIPFC 417 (456)
T ss_pred --CHHHH-HHHHHHcCCCeEEEeCCCHHHHHHHHhhcC------CCEEEEccchHHHHHhcCCCEE
Confidence 11111 12322223355555543 44444444332 2233333444445566776644
No 219
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=67.46 E-value=28 Score=30.20 Aligned_cols=75 Identities=16% Similarity=0.122 Sum_probs=40.2
Q ss_pred HHHHHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC-CcEEEEEChh
Q 023179 63 GKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAG 137 (286)
Q Consensus 63 ~~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~-~~~i~aVG~~ 137 (286)
.-+.+.++++ |.++................+.+.+.....+|+|+..+-..+..+.+.+.+.+.. .+.++..+..
T Consensus 142 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~al~~~g~~~di~vig~d~~ 218 (275)
T cd06320 142 EGFTEAIKKASGIEVVASQPADWDREKAYDVATTILQRNPDLKAIYCNNDTMALGVVEAVKNAGKQGKVLVVGTDGI 218 (275)
T ss_pred HHHHHHHhhCCCcEEEEecCCCccHHHHHHHHHHHHHhCCCccEEEECCchhHHHHHHHHHhcCCCCCeEEEecCCC
Confidence 4456677777 7665432111111100123444555444567888887777777777777777653 4444444433
No 220
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=67.44 E-value=7.5 Score=22.93 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCC
Q 023179 237 PSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGL 273 (286)
Q Consensus 237 ~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~ 273 (286)
|+.+..|+.-++-. .+.=||+.|++.|+++|+
T Consensus 1 pe~v~~~l~~lpi~-----~~~GIG~kt~~kL~~~GI 32 (32)
T PF11798_consen 1 PEDVPEFLWPLPIR-----KFWGIGKKTAKKLNKLGI 32 (32)
T ss_dssp CHHHHHHHHCSBGG-----GSTTS-HHHHHHHHCTT-
T ss_pred ChHHHHHHhcCCHH-----hhCCccHHHHHHHHHccC
Confidence 35667777766533 344589999999999884
No 221
>PRK05569 flavodoxin; Provisional
Probab=67.32 E-value=17 Score=28.59 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=40.8
Q ss_pred EEEeCCCCchHHHHHHHH----hCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---------HHHHHHH
Q 023179 53 VVVTRERGKNGKLIKALA----KHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---------AGSVFLE 119 (286)
Q Consensus 53 VLitR~~~~~~~l~~~L~----~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~---------av~~~~~ 119 (286)
|++..+.+....+++.+. +.|.++.. +..... + . ..+.++|.|+|-||. .+..|++
T Consensus 6 iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~---~~~~~~---~-~----~~~~~~d~iilgsPty~~~~~~~~~~~~~~~ 74 (141)
T PRK05569 6 IIYWSCGGNVEVLANTIADGAKEAGAEVTI---KHVADA---K-V----EDVLEADAVAFGSPSMDNNNIEQEEMAPFLD 74 (141)
T ss_pred EEEECCCCHHHHHHHHHHHHHHhCCCeEEE---EECCcC---C-H----HHHhhCCEEEEECCCcCCCcCChHHHHHHHH
Confidence 444455555555555554 45765433 222211 1 1 134679999999984 2566666
Q ss_pred HHHHcCCCCcEEEEECh
Q 023179 120 AWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 120 ~l~~~~~~~~~i~aVG~ 136 (286)
.+......+.+++++|.
T Consensus 75 ~l~~~~~~~K~v~~f~t 91 (141)
T PRK05569 75 QFKLTPNENKKCILFGS 91 (141)
T ss_pred HhhccCcCCCEEEEEeC
Confidence 66544445777777763
No 222
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=66.54 E-value=15 Score=30.40 Aligned_cols=69 Identities=16% Similarity=0.035 Sum_probs=43.6
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHH-------HHHHHHc-CCCCcEEEE
Q 023179 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVF-------LEAWKEA-GTPNVRIGV 133 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~-------~~~l~~~-~~~~~~i~a 133 (286)
+..++..|++.|++|...|+=+... + ++++||.||+-++-=-..| +....+. .....-++|
T Consensus 18 A~~iA~~L~e~g~qvdi~dl~~~~~----------~-~l~~ydavVIgAsI~~~h~~~~~~~Fv~k~~e~L~~kP~A~f~ 86 (175)
T COG4635 18 AEYIASHLRESGIQVDIQDLHAVEE----------P-ALEDYDAVVIGASIRYGHFHEAVQSFVKKHAEALSTKPSAFFS 86 (175)
T ss_pred HHHHHHHhhhcCCeeeeeehhhhhc----------c-ChhhCceEEEecchhhhhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence 4677888889999998776655432 2 4688999999988544333 3322221 113455777
Q ss_pred EChhhHHH
Q 023179 134 VGAGTASI 141 (286)
Q Consensus 134 VG~~Ta~~ 141 (286)
|+....+.
T Consensus 87 vnl~a~k~ 94 (175)
T COG4635 87 VNLTARKE 94 (175)
T ss_pred eehhhccc
Confidence 77654443
No 223
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=66.54 E-value=52 Score=24.62 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=63.2
Q ss_pred CCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEEEEeChHH
Q 023179 162 ATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPSA 239 (286)
Q Consensus 162 ~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~IvftS~sa 239 (286)
..+..+++.|.+. +.+++++.-+.. ..+.+++.|..+ +.- +...+..+++ +.+.+.++.+.+.-
T Consensus 8 ~~~~~i~~~L~~~---~~~vvvid~d~~---~~~~~~~~~~~~-----i~g---d~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 8 RIGREIAEQLKEG---GIDVVVIDRDPE---RVEELREEGVEV-----IYG---DATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp HHHHHHHHHHHHT---TSEEEEEESSHH---HHHHHHHTTSEE-----EES----TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred HHHHHHHHHHHhC---CCEEEEEECCcH---HHHHHHhccccc-----ccc---cchhhhHHhhcCccccCEEEEccCCH
Confidence 3456677777762 258888876543 467788888442 222 2222344544 46889888888766
Q ss_pred HHHHHHH--hccccCCCceEE--EeCHHHHHHHHHcCCCeEEeC
Q 023179 240 VRSWVNL--ISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYP 279 (286)
Q Consensus 240 v~~~~~~--~~~~~~~~~~iv--~IG~~Ta~~l~~~G~~~v~~~ 279 (286)
..++.-. +++.. ...+++ +-.+.-.+.+++.|...++.|
T Consensus 74 ~~n~~~~~~~r~~~-~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 74 EENLLIALLARELN-PDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp HHHHHHHHHHHHHT-TTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred HHHHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 6665443 22211 134444 558889999999999988766
No 224
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=66.53 E-value=1.3e+02 Score=29.01 Aligned_cols=145 Identities=12% Similarity=0.120 Sum_probs=82.8
Q ss_pred CchHHHHHHHHhCCCcEEEeceEEee-------------eCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cC
Q 023179 60 GKNGKLIKALAKHRIDCLELPLIQHA-------------QGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AG 125 (286)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~-------------~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~-~~ 125 (286)
++..++.+.|++.|+++..+|-+... +..+ ..+++ ++...+...-+..++.+ ....+.+++ .+
T Consensus 181 ~d~~elk~lL~~~Gl~~~~l~d~s~~ld~~~~~~~~~~~~~gg-~t~ee-i~~~~~A~lniv~~~~~-~~~a~~Lee~~g 257 (432)
T TIGR01285 181 GDIEELRRMVEAFGLKPIILPDLSRSLDGHLADDDFSPITQGG-TTLEQ-IRQIGQSCCTLAIGESM-RRAASLLADRCG 257 (432)
T ss_pred cCHHHHHHHHHHcCCceEEecccccccCCCCCCCccceeCCCC-CcHHH-HHhhccCcEEEEEChhH-HHHHHHHHHHHC
Confidence 56789999999999999887744211 1111 12222 22444455555557765 456666664 33
Q ss_pred CCCcEE-EEECh-hhHHHHHHhhhccCCCCceeccCCCC--CHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHh
Q 023179 126 TPNVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSN 199 (286)
Q Consensus 126 ~~~~~i-~aVG~-~Ta~~L~~~~~~~~~G~~~~~~~~~~--~~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~L~~ 199 (286)
.+-... .-+|- .|.+.|++..+.- |..+ |+.. .-+.+.+.+.+. ...|+|+.+..+....-.|...|.+
T Consensus 258 iP~~~~~~p~G~~~t~~~l~~l~~~~--g~~~---~~~~~~~r~~~~~~l~~~~~~l~Gkrvai~~~~~~~~~l~~~l~e 332 (432)
T TIGR01285 258 VPYIVFPSLMGLEAVDAFLHVLMKIS--GRAV---PERFERQRRQLQDAMLDTHFFLGGKKVAIAAEPDLLAAWATFFTS 332 (432)
T ss_pred CCeEecCCCcChHHHHHHHHHHHHHH--CCCc---cHHHHHHHHHHHHHHHHHHHhhCCCEEEEEcCHHHHHHHHHHHHH
Confidence 332222 23565 5666677663221 4321 2110 112233444332 2367899888766666778899999
Q ss_pred CCCeeEEEEeeee
Q 023179 200 RGFEVVRLNTYTT 212 (286)
Q Consensus 200 ~G~~V~~~~vY~~ 212 (286)
.|++|..+.++..
T Consensus 333 lGm~v~~~~~~~~ 345 (432)
T TIGR01285 333 MGAQIVAAVTTTG 345 (432)
T ss_pred CCCEEEEEEeCCC
Confidence 9999987777655
No 225
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=66.38 E-value=62 Score=29.63 Aligned_cols=218 Identities=12% Similarity=0.059 Sum_probs=96.9
Q ss_pred CCCCCCCccccccccccccCCCCCCCeEEEeCCCCch-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh
Q 023179 26 RPLPFQFSRIQASSDATSASASNSNPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN 98 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~ 98 (286)
-.-|.++.+..+.. |. ..++|.+.-+...+ ..+.+.++++|.++..+..-. ..+.+...+.++
T Consensus 29 ~~~~~~LgY~Pn~~----Ar---~t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~~l~i~~~~~---~~~~~~q~~~i~ 98 (343)
T PRK10936 29 LAQRTSLQYSPLLK----AK---KAWKLCALYPHLKDSYWLSVNYGMVEEAKRLGVDLKVLEAGG---YYNLAKQQQQLE 98 (343)
T ss_pred HHhhcccccccccc----cC---CCeEEEEEecCCCchHHHHHHHHHHHHHHHhCCEEEEEcCCC---CCCHHHHHHHHH
Confidence 34456666655522 11 23555544444333 244455667887766543211 112122222222
Q ss_pred c--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhccc
Q 023179 99 A--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPK 173 (286)
Q Consensus 99 ~--~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~ 173 (286)
. ...+|.||+.+.. .+...+ .+.+ .++++++++..... . +....+... ...+...++.|.+
T Consensus 99 ~l~~~~vdgIIl~~~~~~~~~~~l-~~~~---~giPvV~~~~~~~~----~------~~~~~V~~D~~~~g~~aa~~L~~ 164 (343)
T PRK10936 99 QCVAWGADAILLGAVTPDGLNPDL-ELQA---ANIPVIALVNGIDS----P------QVTTRVGVSWYQMGYQAGRYLAQ 164 (343)
T ss_pred HHHHhCCCEEEEeCCChHHhHHHH-HHHH---CCCCEEEecCCCCC----c------cceEEEecChHHHHHHHHHHHHH
Confidence 2 2569999997633 221222 2222 36788877533210 1 110111111 1123333444443
Q ss_pred CC---CCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH----cCCCCEEEEeChHH
Q 023179 174 NG---KKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ----ALSIPVVAVASPSA 239 (286)
Q Consensus 174 ~~---~~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~----~~~~d~IvftS~sa 239 (286)
.. ...++++++.|.... .-+.+.+++.|+++..+ ++... ......+..+. -..+++|+. +...
T Consensus 165 ~~~~~~g~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~i~~~~~-~~~~~-~~~~~~~~~~~~l~~~~~~~ai~~-~d~~ 241 (343)
T PRK10936 165 WHPKGSKPLNVALLPGPEGAGGSKAVEQGFRAAIAGSDVRIVDI-AYGDN-DKELQRNLLQELLERHPDIDYIAG-SAVA 241 (343)
T ss_pred HHHhcCCCceEEEEECCCCCchHHHHHHHHHHHHhcCCCEEEEe-ecCCC-cHHHHHHHHHHHHHhCCCccEEEe-CCHH
Confidence 31 124689888775432 23456677777765431 11111 11111112222 135888874 4445
Q ss_pred HHHHHHHhccccC-CCceEEEe--CHHHHHHHHH
Q 023179 240 VRSWVNLISDTEQ-WSNSVACI--GETTASAAKR 270 (286)
Q Consensus 240 v~~~~~~~~~~~~-~~~~iv~I--G~~Ta~~l~~ 270 (286)
+...+..+.+.+. .++.++++ .|...+++++
T Consensus 242 A~ga~~al~~~g~~~di~Vvg~~~~p~~~~~i~~ 275 (343)
T PRK10936 242 AEAAIGELRGRNLTDKIKLVSFYLSHQVYRGLKR 275 (343)
T ss_pred HHHHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHc
Confidence 5555555554332 23455543 4455455554
No 226
>PRK09739 hypothetical protein; Provisional
Probab=66.01 E-value=25 Score=29.65 Aligned_cols=58 Identities=14% Similarity=0.257 Sum_probs=39.6
Q ss_pred hHHHHHHHhCCCeeEEEEeeeeecCC------------------CCcHHHHHHcCCCCEEEEeCh-------HHHHHHHH
Q 023179 191 NEIEEGLSNRGFEVVRLNTYTTEPVH------------------HVDQTVLKQALSIPVVAVASP-------SAVRSWVN 245 (286)
Q Consensus 191 ~~L~~~L~~~G~~V~~~~vY~~~~~~------------------~~~~~~~~~~~~~d~IvftS~-------sav~~~~~ 245 (286)
+.+.+.+++.|.+|+.+.+|+....+ +..++..+.+...|.|||.+| ..+++|++
T Consensus 24 ~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~Pa~LK~~iD 103 (199)
T PRK09739 24 EAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPLWWYSFPAMLKGYID 103 (199)
T ss_pred HHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECchhhhcchHHHHHHHH
Confidence 45667778888888888888753211 111233444678999999887 78899998
Q ss_pred Hhc
Q 023179 246 LIS 248 (286)
Q Consensus 246 ~~~ 248 (286)
.+-
T Consensus 104 ~v~ 106 (199)
T PRK09739 104 RVW 106 (199)
T ss_pred HHc
Confidence 763
No 227
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=65.74 E-value=53 Score=24.40 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=43.1
Q ss_pred EEEEEcCCCCh-----hHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccCCC
Q 023179 180 TVLYPASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWS 254 (286)
Q Consensus 180 rvL~~~g~~~~-----~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~ 254 (286)
|||+.||.+.. ..+.+.++++|.++ .+... .. .+.......+| +++++|.....+-+.-......+
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~---~v~~~---~~--~~~~~~~~~~D-iil~~Pqv~~~~~~i~~~~~~~~ 71 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDA---EIEAV---PE--SELEEYIDDAD-VVLLGPQVRYMLDEVKKKAAEYG 71 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCce---EEEEe---cH--HHHHHhcCCCC-EEEEChhHHHHHHHHHHHhccCC
Confidence 47777777653 25667788888763 22111 11 11111235788 57778877765544432222236
Q ss_pred ceEEEeCHHH
Q 023179 255 NSVACIGETT 264 (286)
Q Consensus 255 ~~iv~IG~~T 264 (286)
.++..|.+..
T Consensus 72 ~pv~~I~~~~ 81 (96)
T cd05564 72 IPVAVIDMMD 81 (96)
T ss_pred CcEEEcChHh
Confidence 8999998854
No 228
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=65.68 E-value=64 Score=26.69 Aligned_cols=124 Identities=10% Similarity=0.090 Sum_probs=68.1
Q ss_pred EEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCC-CCCEEEEEcCCCC-hhHHHHHHHhCCCeeEEEE
Q 023179 131 IGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK-KKCTVLYPASAKA-SNEIEEGLSNRGFEVVRLN 208 (286)
Q Consensus 131 i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~-~~~rvL~~~g~~~-~~~L~~~L~~~G~~V~~~~ 208 (286)
+++=|.....+++-. |... ++..++-+|+..+.+... .+.++.++.|... .+.+.+.|++..-.+.-+-
T Consensus 9 v~~DG~~i~~~~~~~------g~~~---~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg 79 (172)
T PF03808_consen 9 VLPDGMPIVWAARLL------GRPL---PERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVG 79 (172)
T ss_pred EecCCHHHHHHHHHc------CCCC---CcccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 556677777777776 7553 456667777777765432 5578888877664 4566778887733332232
Q ss_pred eeeeecCCCCcHHHHHHc--CCCCEEEEeChHHHH-HHHHHhccccCCCceEEEeCHHH
Q 023179 209 TYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVR-SWVNLISDTEQWSNSVACIGETT 264 (286)
Q Consensus 209 vY~~~~~~~~~~~~~~~~--~~~d~IvftS~sav~-~~~~~~~~~~~~~~~iv~IG~~T 264 (286)
.|.--..+...+.+++.+ ..+|+|++.-+.=-+ .|+...... +....++|+|...
T Consensus 80 ~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~-l~~~v~i~vG~~~ 137 (172)
T PF03808_consen 80 YHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQERWIARHRQR-LPAGVIIGVGGAF 137 (172)
T ss_pred ecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHH-CCCCEEEEECchh
Confidence 322211222233444433 467777765444332 344444332 2234688888643
No 229
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=65.65 E-value=1e+02 Score=27.59 Aligned_cols=148 Identities=11% Similarity=0.059 Sum_probs=76.6
Q ss_pred CCccEEEEeC-HHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCC
Q 023179 101 TIFDWIIITS-PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKK 178 (286)
Q Consensus 101 ~~~d~IvFTS-~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~ 178 (286)
+..|.||... ..........+.+ .+++++..+..+. .+... .. .....+.+. ......+++.+.+.. .
T Consensus 67 ~~v~avig~~~s~~~~~~~~~~~~---~~iP~i~~~~~~~-~~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~~~g--~ 136 (336)
T cd06326 67 DKVFALFGYVGTPTTAAALPLLEE---AGVPLVGPFTGAS-SLRDP---PD-RNVFNVRASYADEIAAIVRHLVTLG--L 136 (336)
T ss_pred cCcEEEEeCCCchhHHHHHHHHHH---cCCeEEEecCCcH-HhcCC---CC-CceEEeCCChHHHHHHHHHHHHHhC--C
Confidence 3788888743 2222333344443 3667777654432 23211 00 111111222 122445666665533 4
Q ss_pred CEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeCh-HHHHHHHHHhccc
Q 023179 179 CTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSWVNLISDT 250 (286)
Q Consensus 179 ~rvL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS~-sav~~~~~~~~~~ 250 (286)
+|+.++..+. ....+.+.+++.|.++.....|... .......+.++ ..+|+|++++. ..+-.++..+.+.
T Consensus 137 ~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~--~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~i~~~~~~ 214 (336)
T cd06326 137 KRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERN--TADVAAAVAQLAAARPQAVIMVGAYKAAAAFIRALRKA 214 (336)
T ss_pred ceEEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEeecCC--cccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHHHhc
Confidence 6887775443 2345778899999887655445432 11222223222 36899999875 4577788887765
Q ss_pred cCCCceEEEeC
Q 023179 251 EQWSNSVACIG 261 (286)
Q Consensus 251 ~~~~~~iv~IG 261 (286)
+. +.+++..+
T Consensus 215 G~-~~~~~~~~ 224 (336)
T cd06326 215 GG-GAQFYNLS 224 (336)
T ss_pred CC-CCcEEEEe
Confidence 42 45554443
No 230
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.59 E-value=46 Score=30.37 Aligned_cols=151 Identities=13% Similarity=0.068 Sum_probs=78.9
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~---l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
.+..++.|+++..+-+-+. ...+++.+. ++.....|.|++--|---..-.+.+.+.-.....+=.+.+.-...|
T Consensus 53 ~k~a~~~Gi~~~~~~l~~~---~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l 129 (293)
T PRK14185 53 VKACEECGFKSSLIRYESD---VTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGRM 129 (293)
T ss_pred HHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcCCCCHhhHHHH
Confidence 4566778988864333221 122334443 4445678999998873211111111111111111111112211111
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhC----CCeeEEEEeeeeecC
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNR----GFEVVRLNTYTTEPV 215 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~----G~~V~~~~vY~~~~~ 215 (286)
- . |- ..+.| .|+.+.++.|..+. ..|++++++ ||+....-|...|.++ +++|+.+.-.+.
T Consensus 130 ~-~------~~-~~~~P--cTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T~--- 196 (293)
T PRK14185 130 S-I------GL-PCFVS--ATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSK--- 196 (293)
T ss_pred h-C------CC-CCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCCC---
Confidence 1 1 21 22443 57888887776543 378888887 8888888899999887 578876654332
Q ss_pred CCCcHHHHHHcCCCCEEEEeCh
Q 023179 216 HHVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 216 ~~~~~~~~~~~~~~d~IvftS~ 237 (286)
+ ..+. ..+.|+|+..-+
T Consensus 197 -n-l~~~---~~~ADIvIsAvG 213 (293)
T PRK14185 197 -N-LKKE---CLEADIIIAALG 213 (293)
T ss_pred -C-HHHH---HhhCCEEEEccC
Confidence 1 1122 246777775544
No 231
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=65.58 E-value=1.5e+02 Score=29.40 Aligned_cols=196 Identities=11% Similarity=0.108 Sum_probs=99.0
Q ss_pred CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cCCCCcEEEEEC-hh
Q 023179 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-AG 137 (286)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~-~~~~~~~i~aVG-~~ 137 (286)
++-..+.+.|++.|+++..++. .....+++ .+......-+..++.+.....+.+++ .+.+-..+--+| ..
T Consensus 215 gD~~eik~lLe~~Gl~v~~~~~----gg~t~~ei----~~~~~A~lniv~~~~~~~~~A~~Leer~GiP~~~~~~~Gi~~ 286 (513)
T TIGR01861 215 GDQEVMVDYFQRMGIQVLSTFT----GNGSYDDL----RGMHRAHLNVLECARSAEYICNELRKRYGIPRLDIDGFGFEP 286 (513)
T ss_pred cCHHHHHHHHHHCCCeEEEEeC----CCCCHHHH----HhhccCCEEEEECHHHHHHHHHHHHHHhCCCeEecCcCCHHH
Confidence 3567899999999999985442 11122333 34555666555556656666676664 333322222245 35
Q ss_pred hHHHHHHhhhccCCCCcee---ccCCCC-C-HHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHH-hCCCeeEEEEeee
Q 023179 138 TASIFEEVIQSSKCSLDVA---FSPSKA-T-GKILASELPKNGKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLNTYT 211 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~---~~~~~~-~-~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~-~~G~~V~~~~vY~ 211 (286)
|.+.|++..+.- |+... ++++.. - -..| +.... ...|+|+++..+....-.+...|. +.|+++..+-+
T Consensus 287 Td~~Lr~la~~~--g~~~~~e~~I~~e~~~~r~~L-d~~~~-~L~GKrvai~~gg~~~~~~~~~l~~ElGmevv~~~t-- 360 (513)
T TIGR01861 287 LAASLRKVAMFF--GIEDEAQAIIDEETARWKPEL-DWYKE-RLKGKKVCLWPGGSKLWHWAHVIEEEMGLKVVSVYS-- 360 (513)
T ss_pred HHHHHHHHHHHh--CCChhHhHhhHHHHHHHHHHH-HHHHH-hcCCCEEEEECCchHHHHHHHHHHHhCCCEEEEEec--
Confidence 667777653211 43211 111110 0 0011 11111 227899988887766677888888 69998844433
Q ss_pred eecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCC
Q 023179 212 TEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLK 274 (286)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~ 274 (286)
........+..++.+ ..+.+++-.....+.+ +.+... ..-++.-|.+....++++|+-
T Consensus 361 ~~~~~~d~~~~~~~~-~~~~~~i~D~~~~e~~-~~l~~~---~~Dllig~s~~~~~A~k~gIP 418 (513)
T TIGR01861 361 KFGHQGDMEKGVARC-GEGALAIDDPNELEGL-EAMEML---KPDIILTGKRPGEVSKKMRVP 418 (513)
T ss_pred cCCCHHHHHHHHHhC-CCCcEEecCCCHHHHH-HHHHhc---CCCEEEecCccchhHhhcCCC
Confidence 222122222233322 3345555544444432 222211 244555555555566666653
No 232
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=65.22 E-value=43 Score=26.12 Aligned_cols=95 Identities=23% Similarity=0.276 Sum_probs=56.8
Q ss_pred EEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-HHHHHHHHHHHcCCCCcEE
Q 023179 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRI 131 (286)
Q Consensus 53 VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~-av~~~~~~l~~~~~~~~~i 131 (286)
||+|.+- .+...+.|++ |+++...+ ..+.+++.+.+ .++|.|+..+.. --+.+++.+ +++|+
T Consensus 1 ili~~~~--~~~~~~~l~~-~~~v~~~~------~~~~~~~~~~l---~~~d~ii~~~~~~~~~~~l~~~-----~~Lk~ 63 (133)
T PF00389_consen 1 ILITDPL--PDEEIERLEE-GFEVEFCD------SPSEEELAERL---KDADAIIVGSGTPLTAEVLEAA-----PNLKL 63 (133)
T ss_dssp EEESSS---SHHHHHHHHH-TSEEEEES------SSSHHHHHHHH---TTESEEEESTTSTBSHHHHHHH-----TT-SE
T ss_pred eEEeccC--CHHHHHHHHC-CceEEEeC------CCCHHHHHHHh---CCCeEEEEcCCCCcCHHHHhcc-----ceeEE
Confidence 6788764 4666778887 77776666 22334444444 679999987766 223344544 34454
Q ss_pred E-EEChhh----HHHHHHhhhccCCCCceeccCCCCCHHHHHHhc
Q 023179 132 G-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (286)
Q Consensus 132 ~-aVG~~T----a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L 171 (286)
+ ..|.+. -+++++. |+.+..+|. .+++.+++.-
T Consensus 64 I~~~~~G~d~id~~~a~~~------gI~V~n~~g-~~~~aVAE~a 101 (133)
T PF00389_consen 64 ISTAGAGVDNIDLEAAKER------GIPVTNVPG-YNAEAVAEHA 101 (133)
T ss_dssp EEESSSSCTTB-HHHHHHT------TSEEEE-TT-TTHHHHHHHH
T ss_pred EEEcccccCcccHHHHhhC------eEEEEEeCC-cCCcchhccc
Confidence 3 333333 4677777 998877654 5677776554
No 233
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=64.81 E-value=76 Score=26.72 Aligned_cols=55 Identities=16% Similarity=-0.066 Sum_probs=43.4
Q ss_pred CHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCC
Q 023179 163 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (286)
Q Consensus 163 ~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~ 217 (286)
+.+.+++.+.+...+|.+++++.+......+.+..+..|..+....+|+..-.+.
T Consensus 123 ~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 177 (187)
T PRK00107 123 SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVIELTLPGLDG 177 (187)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeEEEecCCCCC
Confidence 4456666665555577899999998888889988899999999999998765543
No 234
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.62 E-value=70 Score=29.05 Aligned_cols=148 Identities=18% Similarity=0.170 Sum_probs=80.6
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHH--HHH--HHHHHHHH-cCCCCcEEEEEChh
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AGS--VFLEAWKE-AGTPNVRIGVVGAG 137 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~--av~--~~~~~l~~-~~~~~~~i~aVG~~ 137 (286)
.+..++.|+++..+-+ ......+++.+.+ +.....|.|++-=|- ... ..++.+.- ...|+..-+-.|.
T Consensus 53 ~k~a~~~Gi~~~~~~l---~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~KDVDGl~p~N~g~- 128 (284)
T PRK14170 53 QKRTEEAGMKSVLIEL---PENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGN- 128 (284)
T ss_pred HHHHHHcCCEEEEEEC---CCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcccCcccCChhhhhH-
Confidence 3455677887765333 2221223444444 345678899988773 222 11222111 0112332222222
Q ss_pred hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
|- . |-. .+.| .|+.++++.|..+. ..|++++++ ||+....-|...|.++|++|+.+.-.+
T Consensus 129 ----l~-~------~~~-~~~P--cTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--- 191 (284)
T PRK14170 129 ----LF-I------GKD-SFVP--CTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--- 191 (284)
T ss_pred ----Hh-C------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---
Confidence 11 1 211 2343 57888887776543 378888887 888888889999999999887665422
Q ss_pred CCCCcHHHHHHcCCCCEEEEeChHH
Q 023179 215 VHHVDQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 215 ~~~~~~~~~~~~~~~d~IvftS~sa 239 (286)
++ .++. ..+.|+|+..-+..
T Consensus 192 -~~-l~~~---~~~ADIvI~AvG~~ 211 (284)
T PRK14170 192 -KD-LPQV---AKEADILVVATGLA 211 (284)
T ss_pred -CC-HHHH---HhhCCEEEEecCCc
Confidence 11 1122 34678877665543
No 235
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.56 E-value=33 Score=29.84 Aligned_cols=71 Identities=20% Similarity=0.081 Sum_probs=45.8
Q ss_pred CCCCCCCeEEEeCCC---CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC--CccEEE--EeCHHHHHHH
Q 023179 45 SASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWII--ITSPEAGSVF 117 (286)
Q Consensus 45 ~~~l~g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~--~~d~Iv--FTS~~av~~~ 117 (286)
|..+.|+.+|||... +-+..+++.|.+.|++|+.. .+. ++..+.+..+. ....+- +|++.+++.+
T Consensus 2 ~~~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~--~r~------~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~ 73 (252)
T PRK06079 2 SGILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYT--YQN------DRMKKSLQKLVDEEDLLVECDVASDESIERA 73 (252)
T ss_pred ccccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe--cCc------hHHHHHHHhhccCceeEEeCCCCCHHHHHHH
Confidence 456789999999875 56889999999999998743 111 11222222221 111111 5889999988
Q ss_pred HHHHHH
Q 023179 118 LEAWKE 123 (286)
Q Consensus 118 ~~~l~~ 123 (286)
++.+.+
T Consensus 74 ~~~~~~ 79 (252)
T PRK06079 74 FATIKE 79 (252)
T ss_pred HHHHHH
Confidence 887654
No 236
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=64.09 E-value=7.9 Score=31.44 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=55.4
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeec-----CCC--CcHHHHHHcCCCCEEEEeChHHHHHHHHHhcc
Q 023179 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP-----VHH--VDQTVLKQALSIPVVAVASPSAVRSWVNLISD 249 (286)
Q Consensus 177 ~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~-----~~~--~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~ 249 (286)
.+++|.++..-.. +.+.|++.+. ++.+++..+ .+. ......+.+...|+|+.|.++-++.-++.+-+
T Consensus 10 ~~~~V~~VG~f~P---~~~~l~~~~~---~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~ 83 (147)
T PF04016_consen 10 PGDKVGMVGYFQP---LVEKLKERGA---EVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGSTLVNGTIDDILE 83 (147)
T ss_dssp TTSEEEEES--HC---CHHHHCCCCS---EEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHHCCTTTHHHHHH
T ss_pred CCCEEEEEcCcHH---HHHHHhcCCC---CEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeeeeecCCHHHHHH
Confidence 5689999886322 5677775554 566777777 221 11223333678999999999876654444332
Q ss_pred ccCCCceEEEeCHHHHHHH---HHcCCCeE
Q 023179 250 TEQWSNSVACIGETTASAA---KRLGLKNV 276 (286)
Q Consensus 250 ~~~~~~~iv~IG~~Ta~~l---~~~G~~~v 276 (286)
.......++.+||++.-.- .++|+..+
T Consensus 84 ~~~~~~~vil~GpS~~~~P~~l~~~Gv~~v 113 (147)
T PF04016_consen 84 LARNAREVILYGPSAPLHPEALFDYGVTYV 113 (147)
T ss_dssp HTTTSSEEEEESCCGGS-GGGGCCTT-SEE
T ss_pred hCccCCeEEEEecCchhhHHHHHhCCCCEE
Confidence 2112467888999886544 45566544
No 237
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=63.93 E-value=45 Score=34.38 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=62.0
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-----HHHHHHHHHHHcCCCCcEEEEEC-
Q 023179 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVG- 135 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~-----av~~~~~~l~~~~~~~~~i~aVG- 135 (286)
..-....|+..|++|+.-..+.. .+.+-+.. ...+.|.|++.|.. .+..+.+.+++.+.+++++++=|
T Consensus 599 a~fv~~~l~~~GfeV~~~~~~~s-----~e~~v~aa-~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG~ 672 (714)
T PRK09426 599 AKVIATAFADLGFDVDIGPLFQT-----PEEAARQA-VENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGGV 672 (714)
T ss_pred HHHHHHHHHhCCeeEecCCCCCC-----HHHHHHHH-HHcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 35567788889999964333311 13333333 24678999998866 44566777777776667777554
Q ss_pred --hhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 136 --AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 136 --~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
+...+.+++. |+...+. .+.+...+++.+.+
T Consensus 673 ~~~~~~~~l~~a------GvD~~i~-~g~d~~~~L~~l~~ 705 (714)
T PRK09426 673 IPPQDYDFLYEA------GVAAIFG-PGTVIADAAIDLLE 705 (714)
T ss_pred CChhhHHHHHhC------CCCEEEC-CCCCHHHHHHHHHH
Confidence 3345578888 9986554 45566666555543
No 238
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.66 E-value=61 Score=29.70 Aligned_cols=148 Identities=17% Similarity=0.131 Sum_probs=78.8
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHH--HHH--HHHHHHHH-cCCCCcEEEEEChh
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AGS--VFLEAWKE-AGTPNVRIGVVGAG 137 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~--av~--~~~~~l~~-~~~~~~~i~aVG~~ 137 (286)
.+..++.|++...+-+- ...+.+++.+.+ +.....|.|++--|- ... ..++.+.. ...|+..-.-.|.
T Consensus 55 ~k~a~~~Gi~~~~~~l~---~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~- 130 (301)
T PRK14194 55 ILRAEEAGIRSLEHRLP---ADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGG- 130 (301)
T ss_pred HHHHHHcCCEEEEEECC---CCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCchhccCccChhhhhH-
Confidence 34566778877644332 211223444444 344678999998773 222 11221110 0113333322221
Q ss_pred hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEEcC-CCChhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPAS-AKASNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~~g-~~~~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
|- . |-. .+.| .|+.+.++.|.... ..|+++.++.- .....-|...|.+.|++|..+.-.+.
T Consensus 131 ----l~-~------~~~-~~~P--cTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~-- 194 (301)
T PRK14194 131 ----LS-Q------GRD-VLTP--CTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST-- 194 (301)
T ss_pred ----Hh-c------CCC-CCCC--CcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--
Confidence 11 1 211 2444 57888887776653 37899999854 46677789999999998866532211
Q ss_pred CCCCcHHHHHHcCCCCEEEEeChHH
Q 023179 215 VHHVDQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 215 ~~~~~~~~~~~~~~~d~IvftS~sa 239 (286)
...+. ....|+|+..-+..
T Consensus 195 ---~l~e~---~~~ADIVIsavg~~ 213 (301)
T PRK14194 195 ---DAKAL---CRQADIVVAAVGRP 213 (301)
T ss_pred ---CHHHH---HhcCCEEEEecCCh
Confidence 22222 24567766555443
No 239
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=63.66 E-value=1.2e+02 Score=27.94 Aligned_cols=169 Identities=11% Similarity=0.072 Sum_probs=88.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCC-Cch---HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEE-EEEC--
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGP-DTD---RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRI-GVVG-- 135 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~-~~~---~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i-~aVG-- 135 (286)
+-..+.|.+.|.. -+.|...... |.. .+-+.+ ..+..|.|+-++.-+.+....+.. ++++ |+-.
T Consensus 49 ~G~~~aLk~~G~~---n~~i~~~na~~~~~~a~~iarql-~~~~~dviv~i~tp~Aq~~~s~~~-----~iPVV~aavtd 119 (322)
T COG2984 49 EGVKEALKDAGYK---NVKIDYQNAQGDLGTAAQIARQL-VGDKPDVIVAIATPAAQALVSATK-----TIPVVFAAVTD 119 (322)
T ss_pred HHHHHHHHhcCcc---CeEEEeecCCCChHHHHHHHHHh-hcCCCcEEEecCCHHHHHHHHhcC-----CCCEEEEccCc
Confidence 4567888899997 2333333222 222 333334 346679988888877777766543 3444 3333
Q ss_pred hhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEE--cCCCC----hhHHHHHHHhCCCeeEEEEe
Q 023179 136 AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYP--ASAKA----SNEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~--~g~~~----~~~L~~~L~~~G~~V~~~~v 209 (286)
+..++...+. +. .|-.+.=+.+....+.-++.+.....+-+++-++ .++.. -++|...+++.|++|.+..+
T Consensus 120 ~v~a~Lv~~~-~~--pg~NvTGvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v 196 (322)
T COG2984 120 PVGAKLVKSL-EQ--PGGNVTGVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAV 196 (322)
T ss_pred hhhccCCccc-cC--CCCceeecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEec
Confidence 3333444322 11 1333322322222333344444444444676333 33322 34677888899999977766
Q ss_pred eeeecCCCCcHHHHHH-cCCCCEEEEeChHHHHHHHHHh
Q 023179 210 YTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVRSWVNLI 247 (286)
Q Consensus 210 Y~~~~~~~~~~~~~~~-~~~~d~IvftS~sav~~~~~~~ 247 (286)
=..... +...+. .++.|+|++.--..+..-++.+
T Consensus 197 ~~~ndi----~~a~~~l~g~~d~i~~p~dn~i~s~~~~l 231 (322)
T COG2984 197 TSVNDI----PRAVQALLGKVDVIYIPTDNLIVSAIESL 231 (322)
T ss_pred Cccccc----HHHHHHhcCCCcEEEEecchHHHHHHHHH
Confidence 333222 223333 3899999887665555544433
No 240
>PLN03139 formate dehydrogenase; Provisional
Probab=63.44 E-value=1.2e+02 Score=28.72 Aligned_cols=155 Identities=12% Similarity=0.036 Sum_probs=81.0
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH----HHHHHHHHHHHHcCCCCcEEE-EECh
Q 023179 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLEAWKEAGTPNVRIG-VVGA 136 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~----~av~~~~~~l~~~~~~~~~i~-aVG~ 136 (286)
...+.+.|++.|.+++..+- ... +.+.+.+ .+.+.|.||.+.. -..+ +++. .+++|++ +.|.
T Consensus 64 ~~~~~~~l~~~g~~~v~~~~---~~~-~~~~~~~---~l~dadili~~~~~~~~~~~e-~l~~-----ap~LK~I~~~g~ 130 (386)
T PLN03139 64 ALGIRDWLESQGHQYIVTDD---KEG-PDCELEK---HIPDLHVLITTPFHPAYVTAE-RIKK-----AKNLELLLTAGI 130 (386)
T ss_pred CccHHHHHHhcCCeEEEeCC---CCC-CHHHHHH---HhCCCeEEEEcCccCCCCCHH-HHhh-----CCCccEEEECCc
Confidence 45677888889988876541 111 2233333 3567887665321 1112 2221 2355543 3343
Q ss_pred hhH----HHHHHhhhccCCCCceeccCCCCCHHHHHHhc--------c------------cC----------CCCCCEEE
Q 023179 137 GTA----SIFEEVIQSSKCSLDVAFSPSKATGKILASEL--------P------------KN----------GKKKCTVL 182 (286)
Q Consensus 137 ~Ta----~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L--------~------------~~----------~~~~~rvL 182 (286)
++- +++.+. |+.+..+|. .+++.+++.. . .| ...|++|.
T Consensus 131 G~D~iDl~aa~~~------gI~V~n~~g-~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVG 203 (386)
T PLN03139 131 GSDHIDLPAAAAA------GLTVAEVTG-SNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVG 203 (386)
T ss_pred cccccCHHHHHHC------CeEEEECCC-cCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEE
Confidence 333 455566 888866653 3444443321 0 01 12667888
Q ss_pred EEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCC---------cHHHHHHcCCCCEEEEeChHH
Q 023179 183 YPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV---------DQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 183 ~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~---------~~~~~~~~~~~d~IvftS~sa 239 (286)
++.-......+.+.|+..|.+|.. |.+...+.. ...+.+.+...|+|++.-|..
T Consensus 204 IVG~G~IG~~vA~~L~afG~~V~~---~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt 266 (386)
T PLN03139 204 TVGAGRIGRLLLQRLKPFNCNLLY---HDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLT 266 (386)
T ss_pred EEeecHHHHHHHHHHHHCCCEEEE---ECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCC
Confidence 886544455688999988887643 443321100 001111235789988888743
No 241
>COG2014 Uncharacterized conserved protein [Function unknown]
Probab=63.38 E-value=38 Score=29.48 Aligned_cols=126 Identities=13% Similarity=0.179 Sum_probs=73.5
Q ss_pred EEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEee
Q 023179 131 IGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (286)
Q Consensus 131 i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY 210 (286)
-.++|-+|..++.++ ++... ..+.-++++.+.... +-+++-++.. -......|++. +.+|
T Consensus 80 e~tlGvAaiNAvsq~------~~dl~----~~~~~Dil~li~~~d-~IkmI~~fg~---m~p~v~~l~ek------~~v~ 139 (250)
T COG2014 80 ERTLGVAAINAVSQY------YIDLE----EANWFDILDLIQRDD-KIKMIAEFGN---MPPVVRTLKEK------FEVY 139 (250)
T ss_pred HHhhhHHHHHHHHHH------hhhHH----hcchHHHHHHHcCCC-ceeEEEecCC---CChHHHHhhhh------eEEE
Confidence 357899999999988 65432 235555555444322 2346666654 22345556543 5555
Q ss_pred eeecCCCCc------HHH-HHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHH---HHHHHcCCCeE
Q 023179 211 TTEPVHHVD------QTV-LKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTA---SAAKRLGLKNV 276 (286)
Q Consensus 211 ~~~~~~~~~------~~~-~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta---~~l~~~G~~~v 276 (286)
.-...+..+ +.. .+.+...|+|+.+.+.-++.-++.+-+......-++-+||++. +.+++.|+.++
T Consensus 140 ~~er~~~~pkr~t~~d~~e~~iLP~~Dvii~SaStlvN~T~d~~Ld~ak~ak~vvl~GPTa~l~pe~f~~~gvt~i 215 (250)
T COG2014 140 VFERNPKLPKRGTLSDTLEYQILPEVDVIIASASTLVNGTLDMILDRAKKAKLVVLTGPTAQLLPEFFKGTGVTHI 215 (250)
T ss_pred EeccCccCcccccccchhhhhhcccccEEEEechhhhcCcHHHHHhhhccCcEEEEeCCCcccchhHHhccCcceE
Confidence 553332222 111 1125789999998888887776665432212355777798775 45778887764
No 242
>PRK07308 flavodoxin; Validated
Probab=63.26 E-value=26 Score=27.93 Aligned_cols=74 Identities=19% Similarity=0.125 Sum_probs=42.9
Q ss_pred eEEEeCCCCchHHHH----HHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH--------HHHHHHH
Q 023179 52 KVVVTRERGKNGKLI----KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLE 119 (286)
Q Consensus 52 ~VLitR~~~~~~~l~----~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~--------av~~~~~ 119 (286)
.|++....+...+++ +.|++.|..+...++-.. +. ..+..+|.|+|-||. .+..|++
T Consensus 5 ~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~------~~-----~~l~~~d~vi~g~~t~g~G~~p~~~~~fl~ 73 (146)
T PRK07308 5 KIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTV------DA-----SDFEDADIAIVATYTYGDGELPDEIVDFYE 73 (146)
T ss_pred EEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccC------CH-----hHhccCCEEEEEeCccCCCCCCHHHHHHHH
Confidence 455555555555554 555566776553322111 10 124668888887754 3556666
Q ss_pred HHHHcCCCCcEEEEECh
Q 023179 120 AWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 120 ~l~~~~~~~~~i~aVG~ 136 (286)
.+....+.+.+++++|-
T Consensus 74 ~l~~~~l~~k~~~vfG~ 90 (146)
T PRK07308 74 DLADLDLSGKIYGVVGS 90 (146)
T ss_pred HHhcCCCCCCEEEEEee
Confidence 66655556778877776
No 243
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=62.91 E-value=61 Score=24.08 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=41.3
Q ss_pred eEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cC
Q 023179 52 KVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AG 125 (286)
Q Consensus 52 ~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~-~~ 125 (286)
+||+....+- ..++.+.++++|.++ ++...+ ..++.. ...++| +|+++|+-...+ +.+++ ..
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~------~v~~~~-~~~~~~---~~~~~D-iil~~Pqv~~~~-~~i~~~~~ 68 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDA------EIEAVP-ESELEE---YIDDAD-VVLLGPQVRYML-DEVKKKAA 68 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCce------EEEEec-HHHHHH---hcCCCC-EEEEChhHHHHH-HHHHHHhc
Confidence 3555555542 246677777888873 333222 122222 246688 778888766544 44543 33
Q ss_pred CCCcEEEEEChh
Q 023179 126 TPNVRIGVVGAG 137 (286)
Q Consensus 126 ~~~~~i~aVG~~ 137 (286)
..++++..|.+.
T Consensus 69 ~~~~pv~~I~~~ 80 (96)
T cd05564 69 EYGIPVAVIDMM 80 (96)
T ss_pred cCCCcEEEcChH
Confidence 346777777664
No 244
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.51 E-value=52 Score=30.11 Aligned_cols=146 Identities=15% Similarity=0.153 Sum_probs=79.2
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHH--HHH--HHHHHHHH-cCCCCcEEEEECh
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AGS--VFLEAWKE-AGTPNVRIGVVGA 136 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~--av~--~~~~~l~~-~~~~~~~i~aVG~ 136 (286)
-.+..++.|+++..+-+ ......+++.+.+ +.....|.|+.--|- ... .+++.+.- ...|+..-+-.|
T Consensus 52 k~k~~~~~Gi~~~~~~l---~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~KDVDGl~~~n~g- 127 (297)
T PRK14167 52 KQRDCEEVGIEAIDVEI---DPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVG- 127 (297)
T ss_pred HHHHHHHcCCEEEEEEC---CCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcccCcccCChhhhH-
Confidence 34556677988775333 2222223444444 345678899988772 222 12222211 011233222222
Q ss_pred hhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHhC----CCeeEEEEe
Q 023179 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSNR----GFEVVRLNT 209 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~~----G~~V~~~~v 209 (286)
.|- . |- ..+.| .|+.++++.|..+. ..|++++++ ||+....-|...|.++ +++|+.+.-
T Consensus 128 ----~l~-~------g~-~~~~P--cTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs 193 (297)
T PRK14167 128 ----RLV-A------GD-ARFKP--CTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHS 193 (297)
T ss_pred ----HHh-C------CC-CCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCC
Confidence 111 1 21 12444 57888887776553 378898888 7888888899999877 788877654
Q ss_pred eeeecCCCCcHHHHHHcCCCCEEEEeC
Q 023179 210 YTTEPVHHVDQTVLKQALSIPVVAVAS 236 (286)
Q Consensus 210 Y~~~~~~~~~~~~~~~~~~~d~IvftS 236 (286)
++. + .++. ..+.|+|+..-
T Consensus 194 ~T~----~-l~~~---~~~ADIvIsAv 212 (297)
T PRK14167 194 RTD----D-LAAK---TRRADIVVAAA 212 (297)
T ss_pred CCC----C-HHHH---HhhCCEEEEcc
Confidence 332 1 1121 34677777643
No 245
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=62.41 E-value=24 Score=29.10 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=37.4
Q ss_pred HHHHHHhCCCcEEEeceEEeee------CCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHHcCCCCcEE
Q 023179 65 LIKALAKHRIDCLELPLIQHAQ------GPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGTPNVRI 131 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~------~~~~~~l~~~l~~~~~~d~IvFTS~-------~av~~~~~~l~~~~~~~~~i 131 (286)
+.+.+++.|.++..+-+..... ....+.+....+.+...|.|||.|| ...+.|++.+....+.+.++
T Consensus 22 ~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~~~~l~~K~v 101 (171)
T TIGR03567 22 VREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVYKASYSGVLKALLDLLPQRALRGKVV 101 (171)
T ss_pred HHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcccCCCCHHHHHHHHhCChhhhCCCEE
Confidence 3455556787776665543211 0012345555556678999999999 34455555442222334444
Q ss_pred E
Q 023179 132 G 132 (286)
Q Consensus 132 ~ 132 (286)
+
T Consensus 102 ~ 102 (171)
T TIGR03567 102 L 102 (171)
T ss_pred E
Confidence 4
No 246
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=62.38 E-value=1.2e+02 Score=27.18 Aligned_cols=138 Identities=18% Similarity=0.155 Sum_probs=75.3
Q ss_pred CCCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCC
Q 023179 100 DTIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKK 177 (286)
Q Consensus 100 ~~~~d~IvFT-S~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~ 177 (286)
..+.+.|+-. +..........+.+. +++++.....+.. ... .....+.|. ......+++.+.+.. +
T Consensus 67 ~~~v~~vvg~~~s~~~~~~~~~~~~~---~ip~i~~~~~~~~--~~~------~~~f~~~~~~~~~~~~~~~~~~~~~-g 134 (343)
T PF13458_consen 67 DDGVDAVVGPLSSAQAEAVAPIAEEA---GIPYISPSASSPS--PDS------PNVFRLSPSDSQQAAALAEYLAKKL-G 134 (343)
T ss_dssp TSTESEEEESSSHHHHHHHHHHHHHH---T-EEEESSGGGGT--TTH------TTEEESS--HHHHHHHHHHHHHHTT-T
T ss_pred hcCcEEEEecCCcHHHHHHHHHHHhc---CcEEEEeeccCCC--CCC------CcEEEEeccccHHHHHHHHHHHHHc-C
Confidence 3678888765 555566666766654 5566664433321 111 222222232 133455666655433 3
Q ss_pred CCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEE-eChHHHHHHHHHhcc
Q 023179 178 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISD 249 (286)
Q Consensus 178 ~~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~Ivf-tS~sav~~~~~~~~~ 249 (286)
.+++.++..+.. ...+.+.+++.|.++.....|. +...+....+.++ .+.|+|++ ..+...-.|+..+.+
T Consensus 135 ~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~~~~~~~~~~~ 212 (343)
T PF13458_consen 135 AKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVGEIRYP--PGDTDFSALVQQLKSAGPDVVVLAGDPADAAAFLRQLRQ 212 (343)
T ss_dssp TSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEE---TTSSHHHHHHHHHHHTTTSEEEEESTHHHHHHHHHHHHH
T ss_pred CcEEEEEecCchhhhHHHHHHHHHHhhcCceeccceecc--cccccchHHHHHHhhcCCCEEEEeccchhHHHHHHHHHh
Confidence 578888865542 4467889999999864444443 2222222233332 57887766 456667888888766
Q ss_pred cc
Q 023179 250 TE 251 (286)
Q Consensus 250 ~~ 251 (286)
.+
T Consensus 213 ~~ 214 (343)
T PF13458_consen 213 LG 214 (343)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 247
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=62.21 E-value=40 Score=30.48 Aligned_cols=70 Identities=19% Similarity=0.142 Sum_probs=40.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-HHHHHHHHHHHcCCCCcEEEEE
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVV 134 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~-av~~~~~~l~~~~~~~~~i~aV 134 (286)
..+.+.++++|+++.....+... ..|.......+. ....|.|++.+.. ....|++.+.+.+++...+..+
T Consensus 151 ~~~~~~~~~~G~~v~~~~~~~~~-~~d~~~~~~~i~-~~~pdaV~~~~~~~~a~~~~~~~~~~G~~~~~~~~~ 221 (341)
T cd06341 151 ALLARSLAAAGVSVAGIVVITAT-APDPTPQAQQAA-AAGADAIITVLDAAVCASVLKAVRAAGLTPKVVLSG 221 (341)
T ss_pred HHHHHHHHHcCCccccccccCCC-CCCHHHHHHHHH-hcCCCEEEEecChHHHHHHHHHHHHcCCCCCEEEec
Confidence 45677777888887654444332 123322222231 2468888888766 5566777777777654444333
No 248
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=62.16 E-value=48 Score=27.42 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEC--hhh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVG--AGT 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~--~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG--~~T 138 (286)
+.+.+.|...|++++ ...-.-|..-.-.+++-+ +.+|.+++.|..+ =|..........+++++++| +.|
T Consensus 69 ~~l~~~l~~~Gf~pv-----~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~--DF~~Lv~~lre~G~~V~v~g~~~~t 141 (160)
T TIGR00288 69 DKLIEAVVNQGFEPI-----IVAGDVDVRMAVEAMELIYNPNIDAVALVTRDA--DFLPVINKAKENGKETIVIGAEPGF 141 (160)
T ss_pred HHHHHHHHHCCceEE-----EecCcccHHHHHHHHHHhccCCCCEEEEEeccH--hHHHHHHHHHHCCCEEEEEeCCCCC
Q ss_pred HHHHHHh
Q 023179 139 ASIFEEV 145 (286)
Q Consensus 139 a~~L~~~ 145 (286)
...|++.
T Consensus 142 s~~L~~a 148 (160)
T TIGR00288 142 STALQNS 148 (160)
T ss_pred hHHHHHh
No 249
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=61.93 E-value=32 Score=28.54 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=43.6
Q ss_pred CHHHHHHhcccCC--CCCCEEEEEcCCC-ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHH
Q 023179 163 TGKILASELPKNG--KKKCTVLYPASAK-ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 163 ~~e~L~~~L~~~~--~~~~rvL~~~g~~-~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sa 239 (286)
++...++.+.+.. ..+++++++.... ....+...|.++|++|..+. +. .+++.+.+...|+|+.+.++.
T Consensus 27 ~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~---r~-----~~~l~~~l~~aDiVIsat~~~ 98 (168)
T cd01080 27 TPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCH---SK-----TKNLKEHTKQADIVIVAVGKP 98 (168)
T ss_pred hHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEE---CC-----chhHHHHHhhCCEEEEcCCCC
Confidence 4445544444432 3779999998765 46668999999998654333 22 122333457899988777663
No 250
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=61.74 E-value=81 Score=26.38 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=51.4
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe-CHHHH---HHHHHHHHHcC
Q 023179 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-SPEAG---SVFLEAWKEAG 125 (286)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT-S~~av---~~~~~~l~~~~ 125 (286)
|+||+....+ -...+.+.|++.|.++..++..... . . .+..+|.||++ +|... ..+.+.++. -
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~~~~~-------~-~---~l~~~d~iIi~gGp~~~~~~~~~~~~i~~-~ 69 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNVEDLD-------L-D---EVENFSHILISPGPDVPRAYPQLFAMLER-Y 69 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEECCccC-------h-h---HhccCCEEEECCCCCChHHhhHHHHHHHH-h
Confidence 7888887765 3556999999999988876653321 1 1 23568999988 55422 222333322 1
Q ss_pred CCCcEEEEEChhhHHHHHHhhhccCCCCcee
Q 023179 126 TPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (286)
Q Consensus 126 ~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~ 156 (286)
..+.++.-|-=+-.-..... |-++.
T Consensus 70 ~~~~PiLGIClG~Qlla~~~------Gg~V~ 94 (190)
T PRK06895 70 HQHKSILGVCLGHQTLCEFF------GGELY 94 (190)
T ss_pred cCCCCEEEEcHHHHHHHHHh------CCeEe
Confidence 23677764444443444444 76653
No 251
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=61.58 E-value=62 Score=27.52 Aligned_cols=65 Identities=23% Similarity=0.238 Sum_probs=46.1
Q ss_pred CCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHH
Q 023179 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVN 245 (286)
Q Consensus 177 ~~~rvL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~ 245 (286)
.+.+|+|+.... ..+.+.+.++..|+++..+.+.+. ...++..+.+...|+|+|+-.+..+..-.
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~----~~~~~~~~~l~~ad~I~~~GG~~~~~~~~ 97 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT----ANDPDVVARLLEADGIFVGGGNQLRLLSV 97 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC----CCCHHHHHHHhhCCEEEEcCCcHHHHHHH
Confidence 457888885554 245677889999999988887665 22234455578999999999888764433
No 252
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=61.45 E-value=27 Score=31.33 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=42.7
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeee-----CCCchHHHHHHhcCCCccEEEEeCHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQ-----GPDTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~-----~~~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
.|.+|+++|+.- ......+...|+.+++++.-.... ..+.+.+++.++.......|++|+|+
T Consensus 98 ~gd~Vlv~~~~h--~s~~~~~~~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p~ 164 (294)
T cd00615 98 PGDKILIDRNCH--KSVINGLVLSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEHPDAKAAVITNPT 164 (294)
T ss_pred CCCEEEEeCCch--HHHHHHHHHCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhCCCceEEEEECCC
Confidence 478999999753 445566777899998887643221 23556777777444567889999874
No 253
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=61.06 E-value=57 Score=24.63 Aligned_cols=77 Identities=8% Similarity=0.146 Sum_probs=43.9
Q ss_pred EEEEEcCCCChh-----HHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccc-cCC
Q 023179 180 TVLYPASAKASN-----EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDT-EQW 253 (286)
Q Consensus 180 rvL~~~g~~~~~-----~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~-~~~ 253 (286)
++|+.||.+... .+.+.++++|+++.-..+ ... +.......+| +++.+|.....+ +.+.+. ...
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~-~~~-------e~~~~~~~~D-vill~PQv~~~~-~~i~~~~~~~ 71 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAG-AYG-------SHYDMIPDYD-LVILAPQMASYY-DELKKDTDRL 71 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEe-eHH-------HHHHhccCCC-EEEEcChHHHHH-HHHHHHhhhc
Confidence 588888777543 466888899987542221 111 1122246788 456666554444 444432 233
Q ss_pred CceEEEeCHHHHH
Q 023179 254 SNSVACIGETTAS 266 (286)
Q Consensus 254 ~~~iv~IG~~Ta~ 266 (286)
+.++.+|-+..--
T Consensus 72 ~ipv~~I~~~~Yg 84 (99)
T cd05565 72 GIKLVTTTGKQYI 84 (99)
T ss_pred CCCEEEeCHHHHh
Confidence 6888888765443
No 254
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=61.03 E-value=54 Score=24.23 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=33.7
Q ss_pred eEEEeCC-CCchHHHHHHHHhCCCcEEEeceEEeeeCCCch--HHHHHHhcCCCccEEEEeCHH
Q 023179 52 KVVVTRE-RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTD--RLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 52 ~VLitR~-~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~--~l~~~l~~~~~~d~IvFTS~~ 112 (286)
+|||.-. ......+.+.++++|++.... ......... .++.. +...|.||+..-.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~h---g~~~~~~~~~~~l~~~---i~~aD~VIv~t~~ 58 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHH---GRDGGDEKKASRLPSK---IKKADLVIVFTDY 58 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEE---ecCCCCccchhHHHHh---cCCCCEEEEEeCC
Confidence 3666666 345688999999999999888 111111111 24433 4677888765433
No 255
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=60.88 E-value=15 Score=30.37 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=39.9
Q ss_pred CCceeccCCCCCHHHHHHhcccCCCC-CCEEEEEcCCCChhHHHHHHHhCCCee
Q 023179 152 SLDVAFSPSKATGKILASELPKNGKK-KCTVLYPASAKASNEIEEGLSNRGFEV 204 (286)
Q Consensus 152 G~~~~~~~~~~~~e~L~~~L~~~~~~-~~rvL~~~g~~~~~~L~~~L~~~G~~V 204 (286)
|+.+.|.+++.+++.+++.+...... +.+|+++.++.. +.......|+.+
T Consensus 67 gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~---iq~~~~~~GA~~ 117 (166)
T PF05991_consen 67 GIEVVFTKEGETADDYIERLVRELKNRPRQVTVVTSDRE---IQRAARGRGAKR 117 (166)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhccCCCeEEEEeCCHH---HHHHHhhCCCEE
Confidence 99999998889999999988776543 689999998763 566677788644
No 256
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=60.70 E-value=1e+02 Score=30.54 Aligned_cols=115 Identities=10% Similarity=0.137 Sum_probs=68.7
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceEE------------eeeCC-CchHHHHHHhcCCCccEEEEeCHHHHHH-
Q 023179 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ------------HAQGP-DTDRLSSVLNADTIFDWIIITSPEAGSV- 116 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~-~~~~l~~~l~~~~~~d~IvFTS~~av~~- 116 (286)
.+|+|.....-+..+++.|+++|.++.-+-.=+ ....+ ..++..+.. .+++.|.++.+.++..+.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a-~i~~a~~viv~~~~~~~~~ 496 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLA-HLDCARWLLLTIPNGYEAG 496 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhc-CccccCEEEEEcCChHHHH
Confidence 567777777778899999999998775432100 00000 011111112 356889888886664432
Q ss_pred -HHHHHHHcCCCCcEEEEE--ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 117 -FLEAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 117 -~~~~l~~~~~~~~~i~aV--G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
......+.. ++.++++. .+...+.+++. |.+..+.|+...++.+.+.+..
T Consensus 497 ~iv~~~~~~~-~~~~iiar~~~~~~~~~l~~~------Gad~vv~p~~~~a~~i~~~l~~ 549 (558)
T PRK10669 497 EIVASAREKR-PDIEIIARAHYDDEVAYITER------GANQVVMGEREIARTMLELLET 549 (558)
T ss_pred HHHHHHHHHC-CCCeEEEEECCHHHHHHHHHc------CCCEEEChHHHHHHHHHHHhcC
Confidence 333334332 45566644 44555667777 9998888887777777766644
No 257
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=60.66 E-value=9.7 Score=32.09 Aligned_cols=66 Identities=21% Similarity=0.200 Sum_probs=43.2
Q ss_pred ccccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH
Q 023179 41 ATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (286)
Q Consensus 41 ~~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~ 111 (286)
.+..-..|.||+|.+++.......+...|+++|++...+-.+...+ ..+..+| .-+..|+++..-+
T Consensus 84 ~i~~~~DLkGK~i~v~~~s~~~~~~~~~l~~~g~~~~~v~~v~~~~----~~~~~al-~~g~vDa~~~~~~ 149 (216)
T PF09084_consen 84 GIKSPADLKGKKIGVSRGSSSEYFLRALLKKNGIDPDDVKIVNLGP----PELAQAL-LSGQVDAAILWYP 149 (216)
T ss_dssp S-SSGGGGTTSEEEESTTSHHHHHHHHHHHHTTT-GGGSEEEES-H----HHHHHHH-HTTSSSEEEEEEE
T ss_pred CCCCHHHhCCCEEEEecCcchhHHHHHHHHHhccccccceeeeeeh----hhhhhhh-hcCCCCEEEEccC
Confidence 3455578899999999965566788899999999766554443321 3343455 3478898883333
No 258
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=60.42 E-value=52 Score=27.40 Aligned_cols=75 Identities=21% Similarity=0.155 Sum_probs=38.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC--CCcEEEEEChh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT--PNVRIGVVGAG 137 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~--~~~~i~aVG~~ 137 (286)
..+.+.++++|..+............+.+.+.+.++.....+.|++.+......+++.+.+.+. ++..++..+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~g~~~~~~~ii~~~~~ 219 (269)
T cd01391 143 EGFKAALKKAGIEVVAIEYGDLDTEKGFQALLQLLKAAPKPDAIFACNDEMAAGALKAAREAGLTPGDISIIGFDGS 219 (269)
T ss_pred HHHHHHHHhcCcEEEeccccCCCccccHHHHHHHHhcCCCCCEEEEcCchHHHHHHHHHHHcCCCCCCCEEEecccc
Confidence 3445556666644433222221111122344444433235677777777666667777777665 35555555443
No 259
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.91 E-value=71 Score=29.01 Aligned_cols=148 Identities=17% Similarity=0.125 Sum_probs=80.4
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHH--HHH--HHHHHHHH-cCCCCcEEEEEChh
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPE--AGS--VFLEAWKE-AGTPNVRIGVVGAG 137 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~--av~--~~~~~l~~-~~~~~~~i~aVG~~ 137 (286)
.+..++.|+++..+-+-+. ...+++.+.+ +.....|.|++--|- ..+ ..++.+.- ...|+..-+-.|
T Consensus 54 ~k~a~~~Gi~~~~~~l~~~---~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~KDVDGl~~~n~g-- 128 (284)
T PRK14193 54 HRDCAEVGITSIRRDLPAD---ATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLG-- 128 (284)
T ss_pred HHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcccCccCCChhhhh--
Confidence 4456677888765443222 1223444444 344678899988773 222 12222110 011233222222
Q ss_pred hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEE-cCCCChhHHHHHHHh--CCCeeEEEEeeee
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYP-ASAKASNEIEEGLSN--RGFEVVRLNTYTT 212 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~-~g~~~~~~L~~~L~~--~G~~V~~~~vY~~ 212 (286)
.|- . |-. .+.| .|+.++++.|..+. ..|++++++ |++....-|...|.. +|++|+.+..++.
T Consensus 129 ---~l~-~------~~~-~~~P--cTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~ 195 (284)
T PRK14193 129 ---RLV-L------NEP-APLP--CTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTR 195 (284)
T ss_pred ---HHh-C------CCC-CCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCC
Confidence 111 1 211 1333 57888887776553 268888887 777778888999987 6888876665421
Q ss_pred ecCCCCcHHHHHHcCCCCEEEEeChHH
Q 023179 213 EPVHHVDQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~IvftS~sa 239 (286)
+ +.+...+.|+|+..-+..
T Consensus 196 ----~----l~~~~k~ADIvV~AvGkp 214 (284)
T PRK14193 196 ----D----LAAHTRRADIIVAAAGVA 214 (284)
T ss_pred ----C----HHHHHHhCCEEEEecCCc
Confidence 1 112235788888766554
No 260
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=59.82 E-value=70 Score=27.33 Aligned_cols=76 Identities=9% Similarity=0.049 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC---CcEEEEEChh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP---NVRIGVVGAG 137 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~---~~~i~aVG~~ 137 (286)
.-+.+.++++|......-.+......+ .+.+.+.|.....+|+|+.++...+..+++.+.+.+.. ++.+++.+..
T Consensus 137 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~al~~~g~~~p~di~iig~d~~ 216 (268)
T cd06289 137 AGYRAALAEAGLPFDSELVVEGPPSRQGGAEAVAQLLDLPPRPTAIVCFNDLVAFGAMSGLRRAGLTPGRDIAVVGFDDV 216 (268)
T ss_pred HHHHHHHHHcCCCCCchhEEecCcchhhHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCcceEEEeecCc
Confidence 445566667774332211111111111 23344555333567888888888777778888777653 5667666664
Q ss_pred h
Q 023179 138 T 138 (286)
Q Consensus 138 T 138 (286)
.
T Consensus 217 ~ 217 (268)
T cd06289 217 A 217 (268)
T ss_pred h
Confidence 3
No 261
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=59.79 E-value=22 Score=31.97 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=57.5
Q ss_pred CCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc---CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEE
Q 023179 57 RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA---DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGV 133 (286)
Q Consensus 57 R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~---~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~a 133 (286)
++-+.+.+..+.|+++|..++.+. ..+....+.+.+.|.. .....--|+||..+...+++... +..++|+
T Consensus 24 ~~ipga~e~l~~L~~~g~~~iflT---Nn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~----~~~kv~v 96 (269)
T COG0647 24 EAIPGAAEALKRLKAAGKPVIFLT---NNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATADYLAKQK----PGKKVYV 96 (269)
T ss_pred ccCchHHHHHHHHHHcCCeEEEEe---CCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHHHHHHhhC----CCCEEEE
Confidence 334578899999999999888553 3333322334455544 22334457899999887766422 3489999
Q ss_pred EChhhH-HHHHHhhhccCCCCceec
Q 023179 134 VGAGTA-SIFEEVIQSSKCSLDVAF 157 (286)
Q Consensus 134 VG~~Ta-~~L~~~~~~~~~G~~~~~ 157 (286)
||+.-- +.|+.. |+....
T Consensus 97 iG~~~l~~~l~~~------G~~~~~ 115 (269)
T COG0647 97 IGEEGLKEELEGA------GFELVD 115 (269)
T ss_pred ECCcchHHHHHhC------CcEEec
Confidence 998776 677777 876533
No 262
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.76 E-value=1.2e+02 Score=26.48 Aligned_cols=175 Identities=13% Similarity=0.012 Sum_probs=81.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~~~~~d~IvFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
.+.+.++++|.+++.... . .+.+...+.++ ....+|.||+++... ....++.+.+ .+++++.+|....
T Consensus 21 gi~~~a~~~gy~~~~~~~---~--~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~---~~iPvV~~d~~~~ 92 (280)
T cd06315 21 GVREAAKAIGWNLRILDG---R--GSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELELAQK---AGIPVVGWHAGPE 92 (280)
T ss_pred HHHHHHHHcCcEEEEECC---C--CCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH---CCCCEEEecCCCC
Confidence 444667788888765432 1 12222122222 236799999987632 2333444433 3688888886321
Q ss_pred HHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCCh------hHHHHHHHhC-CCeeEEEEeee
Q 023179 140 SIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS------NEIEEGLSNR-GFEVVRLNTYT 211 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~------~~L~~~L~~~-G~~V~~~~vY~ 211 (286)
..-... + ..+.. +... ...+..+++.|.+.....++++++.+.... .-+...++.. +..+....-+.
T Consensus 93 ~~~~~~---~-~~~~~-v~~D~~~~~~~~~~~L~~~~~G~~~i~~i~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~ 167 (280)
T cd06315 93 PGPIEE---P-GIFYN-VTTDPLAVAEVAALYAIANSGGKAGVVIFTDSRFSIAKAKANAMKEIIEACKGCTVLSIEDVP 167 (280)
T ss_pred CCcccC---C-ceeEE-ecCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCccHHHHHHHHHHHHHhCCCCEEEEecccC
Confidence 100000 0 00111 1121 123455666666553234788888654321 2333344332 33331111111
Q ss_pred eecCCC-Cc---HHHHHHc-CCCCEEEEeChHHHHHHHHHhcccc
Q 023179 212 TEPVHH-VD---QTVLKQA-LSIPVVAVASPSAVRSWVNLISDTE 251 (286)
Q Consensus 212 ~~~~~~-~~---~~~~~~~-~~~d~IvftS~sav~~~~~~~~~~~ 251 (286)
...... .. +++++.. ..+++|++.+-..+.-.+..+.+.+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~D~~A~g~~~~l~~~g 212 (280)
T cd06315 168 ISRTATRMPALTARLLQRYGDKWTHSLAINDLYFDYMAPPLASAG 212 (280)
T ss_pred cchhhhhhHHHHHHHHHhcCcccceecccchhhhHHhHHHHHHhc
Confidence 110000 01 1222221 3479999999887777776666543
No 263
>COG0715 TauA ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]
Probab=59.75 E-value=31 Score=31.23 Aligned_cols=67 Identities=22% Similarity=0.133 Sum_probs=48.2
Q ss_pred cccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 42 TSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
+.+-..|.|++|-++++.. ..--|...|++.|.+...+.+....+ ..+...+ ..+..|..+..=|..
T Consensus 128 i~~~adlkGk~vg~~~~~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~----~~~~~al-~~g~vda~~~~ep~~ 195 (335)
T COG0715 128 IKSVADLKGKKVGVPFGGSTSDFLLRYALAKAGLDPDDVELVNLPP----ADAVAAL-AAGQVDAFVVWEPWN 195 (335)
T ss_pred cccccCCCCceEEEeCCCchHHHHHHHHHHHcCCCcccceEEeeCc----HHHHHHH-hcCCcceEEecCCch
Confidence 3335788999999999986 78899999999999999888444433 2344555 346777755444444
No 264
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=59.65 E-value=40 Score=32.14 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=28.7
Q ss_pred CCCCCCeEEEeCC----------------CC-chHHHHHHHHhCCCcEEEe
Q 023179 46 ASNSNPKVVVTRE----------------RG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 46 ~~l~g~~VLitR~----------------~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
.++.|++||||-+ .+ -+..+++.|.++|++|..+
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v 234 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLV 234 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEe
Confidence 5688999999987 44 3789999999999999754
No 265
>PRK05670 anthranilate synthase component II; Provisional
Probab=59.26 E-value=1e+02 Score=25.63 Aligned_cols=84 Identities=19% Similarity=0.130 Sum_probs=52.4
Q ss_pred CCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHHcCCCCcEEE
Q 023179 57 RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAGTPNVRIG 132 (286)
Q Consensus 57 R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l~~~~~~~~~i~ 132 (286)
-...-...+.+.|+++|+++..+|..... .+. +..+ .+|.||++ |+.......+.+... ..+.+++
T Consensus 7 ~~d~f~~~i~~~l~~~g~~~~v~~~~~~~----~~~----~~~~-~~dglIlsgGpg~~~d~~~~~~~l~~~-~~~~PvL 76 (189)
T PRK05670 7 NYDSFTYNLVQYLGELGAEVVVYRNDEIT----LEE----IEAL-NPDAIVLSPGPGTPAEAGISLELIREF-AGKVPIL 76 (189)
T ss_pred CCCchHHHHHHHHHHCCCcEEEEECCCCC----HHH----HHhC-CCCEEEEcCCCCChHHcchHHHHHHHh-cCCCCEE
Confidence 33445678999999999999887754321 111 2223 38999997 665544344433322 2467888
Q ss_pred EEChhhHHHHHHhhhccCCCCcee
Q 023179 133 VVGAGTASIFEEVIQSSKCSLDVA 156 (286)
Q Consensus 133 aVG~~Ta~~L~~~~~~~~~G~~~~ 156 (286)
.|.-+-.-..... |-++.
T Consensus 77 GIClG~Qlla~al------Gg~v~ 94 (189)
T PRK05670 77 GVCLGHQAIGEAF------GGKVV 94 (189)
T ss_pred EECHHHHHHHHHh------CCEEE
Confidence 7777776666666 76653
No 266
>PRK08250 glutamine amidotransferase; Provisional
Probab=59.11 E-value=64 Score=28.19 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=53.7
Q ss_pred CeEEEeCCCC--chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-HHHHH------H----
Q 023179 51 PKVVVTRERG--KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-EAGSV------F---- 117 (286)
Q Consensus 51 ~~VLitR~~~--~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~-~av~~------~---- 117 (286)
|+|++.+... ....+...+++.|+++....++.-.+.++ ...+||.||++-. ..+.. +
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g~~~p~---------~~~~~d~vii~GGp~~~~~~~~~~p~~~~~ 71 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAGEALPE---------NADGFDLLIVMGGPQSPRTTREECPYFDSK 71 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCCCCCCC---------CccccCEEEECCCCCChhhccccccccchH
Confidence 4677776653 56788899999998877655443222110 2467999999754 22110 1
Q ss_pred --HHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceec
Q 023179 118 --LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAF 157 (286)
Q Consensus 118 --~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~ 157 (286)
.+.+...-..+++++.|--+-.-..+.. |-++.-
T Consensus 72 ~~~~~i~~~~~~~~PvlGIC~G~Qlla~al------Gg~V~~ 107 (235)
T PRK08250 72 AEQRLINQAIKAGKAVIGVCLGAQLIGEAL------GAKYEH 107 (235)
T ss_pred HHHHHHHHHHHcCCCEEEEChhHHHHHHHh------Cceecc
Confidence 1112221114678887777766666666 766643
No 267
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=58.88 E-value=1.7e+02 Score=28.00 Aligned_cols=36 Identities=8% Similarity=0.052 Sum_probs=30.6
Q ss_pred cCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 44 ~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
.++||.|.+|..+-+-. +...|...|.+.|++|...
T Consensus 26 ~~~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~ 62 (406)
T TIGR00936 26 EEKPLKGARIAACLHVTVETAVLIETLVAGGAEVAWT 62 (406)
T ss_pred ccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEE
Confidence 35999999999997764 6789999999999998766
No 268
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=58.84 E-value=91 Score=27.89 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=55.5
Q ss_pred CCCeEEEeCCCCc--hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-H----------
Q 023179 49 SNPKVVVTRERGK--NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-S---------- 115 (286)
Q Consensus 49 ~g~~VLitR~~~~--~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~---------- 115 (286)
.+++|+|.+..+- ..+....|++.|+++..+++....... ..+..||.|||.-..+. +
T Consensus 2 ~~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~---------~~l~~~DgLvipGGfs~gD~l~~g~~~~~ 72 (261)
T PRK01175 2 ESIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAER---------KSVSDYDCLVIPGGFSAGDYIRAGAIFAA 72 (261)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccc---------cchhhCCEEEECCCCCcccccccchhhHH
Confidence 3567777776543 456789999999999887764321100 12467999999876311 0
Q ss_pred HH----HHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCce
Q 023179 116 VF----LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (286)
Q Consensus 116 ~~----~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 155 (286)
.+ .+.+++.-..+.+++.|..+. +.|-+. |+-+
T Consensus 73 ~l~~~l~~~Ik~f~~~gkpVLGICnG~-QlLa~~------GlLp 109 (261)
T PRK01175 73 RLKAVLRKDIEEFIDEGYPIIGICNGF-QVLVEL------GLLP 109 (261)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEECHHH-HHHHHC------CCCC
Confidence 11 122222222477888888776 567777 8764
No 269
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=58.32 E-value=65 Score=29.23 Aligned_cols=128 Identities=20% Similarity=0.151 Sum_probs=73.8
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHHH----HHHHHHHHH-cCCCCcEEEEEChh
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEAG----SVFLEAWKE-AGTPNVRIGVVGAG 137 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~av----~~~~~~l~~-~~~~~~~i~aVG~~ 137 (286)
.+..++.|+....+-+-+... .++|.+.+ +...+.|.|++-=|--- ...++.+.. ...|+..-+=+|.-
T Consensus 52 ~k~~~~iGi~~~~~~l~~~~t---~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L 128 (283)
T COG0190 52 KKAAEEIGIASELYDLPEDIT---EEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKL 128 (283)
T ss_pred HHHHHHcCCeeEEEeCCCcCC---HHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcch
Confidence 345667898887655543332 23444444 34578899998755432 112222211 01123332222221
Q ss_pred hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCC--CCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeee
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYT 211 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~--~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~ 211 (286)
.. | ...+.| .|..+++..|..... .|++++++ ||+....-|...|...+++|+.+...+
T Consensus 129 ~~------------~-~~~~~P--CTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T 190 (283)
T COG0190 129 AQ------------G-EPGFLP--CTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT 190 (283)
T ss_pred hc------------C-CCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC
Confidence 11 1 111232 578888877766543 78887777 888888889999999999998777655
No 270
>PRK06849 hypothetical protein; Provisional
Probab=58.24 E-value=69 Score=30.01 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=52.8
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEE--------------eeeCC--Cc----hHHHHHHhcCCCccEEE
Q 023179 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQ--------------HAQGP--DT----DRLSSVLNADTIFDWII 107 (286)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~--------------~~~~~--~~----~~l~~~l~~~~~~d~Iv 107 (286)
.+++||||-... ..-.+++.|.++|++|+.+-.-. ..+.+ +. +.|.+.++ -.++|.||
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~-~~~id~vI 81 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQ-RENIDLLI 81 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHH-HcCCCEEE
Confidence 469999998765 46789999999999987653221 11112 21 23333332 35689999
Q ss_pred EeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 108 ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 108 FTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
-|+-.. .+.....+.-.+..++..-+..+.+
T Consensus 82 P~~e~~--~~~a~~~~~l~~~~~v~~~~~~~~~ 112 (389)
T PRK06849 82 PTCEEV--FYLSHAKEELSAYCEVLHFDFELLL 112 (389)
T ss_pred ECChHH--HhHHhhhhhhcCCcEEEcCCHHHHH
Confidence 988753 3444333322235566666666553
No 271
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=57.92 E-value=1.5e+02 Score=26.94 Aligned_cols=153 Identities=12% Similarity=0.107 Sum_probs=73.7
Q ss_pred CCccEEEEe--CHHHHHHHHHHHHHcCCCCcEEEEEChhhHH-HHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCC-
Q 023179 101 TIFDWIIIT--SPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS-IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNG- 175 (286)
Q Consensus 101 ~~~d~IvFT--S~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~-~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~- 175 (286)
...|.||+. ........++.+.+ .++++++++..... .+... .....+.... ..+....+.+.++.
T Consensus 80 ~~vdgiIi~~~~~~~~~~~l~~l~~---~giPvV~vd~~~~~~~~~~~------~~~~~V~~D~~~ag~~a~~~l~~~~~ 150 (330)
T PRK15395 80 KGVKALAINLVDPAAAPTVIEKARG---QDVPVVFFNKEPSRKALDSY------DKAYYVGTDSKESGIIQGDLIAKHWK 150 (330)
T ss_pred cCCCEEEEeccCHHHHHHHHHHHHH---CCCcEEEEcCCccccccccc------cceeEEccChHHHHHHHHHHHHHHHh
Confidence 579999987 33334444454443 47889999874311 11111 1001111121 11222222233211
Q ss_pred --------CCC-CEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH-c-----CCCCEEE
Q 023179 176 --------KKK-CTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-A-----LSIPVVA 233 (286)
Q Consensus 176 --------~~~-~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~-~-----~~~d~Iv 233 (286)
..| .+++++.|... ..-+.+.|+++|..+.....+..........+..++ + ..+++|+
T Consensus 151 ~~~~~~~~~~g~~~i~~i~g~~~~~~~~~R~~G~~~al~~~g~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ai~ 230 (330)
T PRK15395 151 ANPAWDLNKDGKIQYVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI 230 (330)
T ss_pred hccccccCCCCceEEEEEecCCCCchHHHHHHHHHHHHHhcCCCeeeeecccCCcCHHHHHHHHHHHHhhCcCCCeeEEE
Confidence 122 24566655432 234557778888776553222111111111112222 1 2478988
Q ss_pred EeChHHHHHHHHHhccccCCCceEEEeCH
Q 023179 234 VASPSAVRSWVNLISDTEQWSNSVACIGE 262 (286)
Q Consensus 234 ftS~sav~~~~~~~~~~~~~~~~iv~IG~ 262 (286)
+.|-..+...++.+.+.+...+++++++.
T Consensus 231 ~~~d~~A~gvl~al~~~Gl~~vpVvg~D~ 259 (330)
T PRK15395 231 ANNDAMAMGAVEALKAHNKSSIPVFGVDA 259 (330)
T ss_pred ECCchHHHHHHHHHHhcCCCCCeEEeeCC
Confidence 88888777777777665432456777753
No 272
>PRK09271 flavodoxin; Provisional
Probab=57.92 E-value=52 Score=26.76 Aligned_cols=68 Identities=9% Similarity=0.041 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH--------HHHHHHHHHHHcCCCCcEEEEE
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLEAWKEAGTPNVRIGVV 134 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~--------av~~~~~~l~~~~~~~~~i~aV 134 (286)
..+++.|++.|+++... ..... +.. .....+.++|.|+|-|+. .+..|++.+......+.+++++
T Consensus 19 ~~ia~~l~~~g~~v~~~---~~~~~-~~~---~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avf 91 (160)
T PRK09271 19 REIEERCEEAGHEVDWV---ETDVQ-TLA---EYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVF 91 (160)
T ss_pred HHHHHHHHhCCCeeEEE---ecccc-ccc---ccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEE
Confidence 44556666778766422 22110 101 111134678999998852 4677877776533345566666
Q ss_pred Chh
Q 023179 135 GAG 137 (286)
Q Consensus 135 G~~ 137 (286)
|..
T Consensus 92 gsg 94 (160)
T PRK09271 92 GTG 94 (160)
T ss_pred ecC
Confidence 653
No 273
>PRK11480 tauA taurine transporter substrate binding subunit; Provisional
Probab=57.92 E-value=27 Score=31.79 Aligned_cols=67 Identities=12% Similarity=0.029 Sum_probs=46.4
Q ss_pred cccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 42 TSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
+.+...|+||+|.++........+...|++.|.+...+- ..... ...+...+ .-+..|+++...|..
T Consensus 114 I~s~~DLkGK~Iav~~~s~~~~~l~~~L~~~Gl~~~dv~---~v~~~-~~~~~~Al-~~G~VDAa~~~~p~~ 180 (320)
T PRK11480 114 ISKPEDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVE---IVNLQ-PPAIIAAW-QRGDIDGAYVWAPAV 180 (320)
T ss_pred CCChHHcCCCEEecCCCCchHHHHHHHHHHcCCCHhheE---EEECC-cHHHHHHH-HcCCcCEEEEcchHH
Confidence 455678899999998766555677888999999876533 33222 13344556 357899988887764
No 274
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=57.58 E-value=1.9e+02 Score=28.08 Aligned_cols=197 Identities=11% Similarity=0.084 Sum_probs=96.7
Q ss_pred CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cCCCCcEEEEEC-hh
Q 023179 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-AG 137 (286)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~-~~~~~~~i~aVG-~~ 137 (286)
.+..++.+.|++.|+++...- ......+++ .+......-+..++.....+.+.+++ .+.+-..+--+| +.
T Consensus 214 gd~~el~~lL~~~Gi~v~~~~----~g~~t~~ei----~~~~~A~lnlv~~~~~~~~~A~~Leer~GiP~~~~~p~Gi~~ 285 (461)
T TIGR01860 214 GDTQVLQKYWDKMGIQVIAHF----TGNGTYDDL----RCMHRAQLNVVNCARSAGYIANELKKRYGIPRLDVDTWGFNY 285 (461)
T ss_pred ccHHHHHHHHHHcCCcEEEEe----CCCCCHHHH----HhcccCcEEEEECchHHHHHHHHHHHHhCCCeecCCcCCHHH
Confidence 345789999999999997311 111222333 24555555444444433445666654 344322222356 45
Q ss_pred hHHHHHHhhhccCCCCcee---ccCCCCCHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHH-hCCCeeEEEEeee
Q 023179 138 TASIFEEVIQSSKCSLDVA---FSPSKATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLNTYT 211 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~---~~~~~~~~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~L~-~~G~~V~~~~vY~ 211 (286)
|.+.|++..+.- |+... ++++. -+..-..|... ...|+|+.+..+....-.+...|. +.|.+|..+.++.
T Consensus 286 T~~~L~~la~~~--g~~~~~e~~I~~e--~~~~~~~Ld~~~~~L~GkrvaI~~~~~~~~~~~~~l~~ElGmevv~~~~~~ 361 (461)
T TIGR01860 286 MAEALRKIGAFF--GIEDKAEEVIAEE--YAKYKPKLDWYKERLQGKKMCIWTGGPRLWHWTKALEDDLGMQVVAMSSKF 361 (461)
T ss_pred HHHHHHHHHHHh--CCcHHHHHHHHHH--HHHHHHHHHHHHHHcCCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeeec
Confidence 667776653211 33211 01110 00011112111 126889887766544445777887 7999986664332
Q ss_pred eecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCe
Q 023179 212 TEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 275 (286)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~ 275 (286)
. .+...+.+.. ....+.+++.....++ +.+.+.+. ...++.-|..-...++++|+--
T Consensus 362 ~--~~~~~~~~~~-~~~~~~i~i~d~~~~e-~~~~~~~~---~pDliig~s~~~~~A~klgiP~ 418 (461)
T TIGR01860 362 G--HQEDFEKVIA-RGKEGTIYIDDGNELE-FFEVLDLI---KPDVIFTGPRVGELVKKLHIPY 418 (461)
T ss_pred C--CHHHHHHHHH-hcCCCeEEEeCCCHHH-HHHHHHhc---CCCEEEeCCcchhhHhhcCCCE
Confidence 1 1222222222 2344556666655555 33333321 2445555555556667777653
No 275
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=57.25 E-value=28 Score=29.38 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=14.2
Q ss_pred hHHHHHHHHhCCCcEEEe
Q 023179 62 NGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~ 79 (286)
+..+++.+..+|++|..+
T Consensus 32 G~~lA~~~~~~Ga~V~li 49 (185)
T PF04127_consen 32 GAALAEEAARRGAEVTLI 49 (185)
T ss_dssp HHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 578999999999998754
No 276
>PRK10444 UMP phosphatase; Provisional
Probab=57.18 E-value=68 Score=28.26 Aligned_cols=35 Identities=9% Similarity=0.214 Sum_probs=25.0
Q ss_pred HHhcccCCCCCCEEEEEcCCCC--hhHHHHHHHhCCCeeE
Q 023179 168 ASELPKNGKKKCTVLYPASAKA--SNEIEEGLSNRGFEVV 205 (286)
Q Consensus 168 ~~~L~~~~~~~~rvL~~~g~~~--~~~L~~~L~~~G~~V~ 205 (286)
+..|.+ .|+++.++.++.. ...+.+.|+..|+++.
T Consensus 26 l~~L~~---~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~ 62 (248)
T PRK10444 26 LHRILD---KGLPLVLLTNYPSQTGQDLANRFATAGVDVP 62 (248)
T ss_pred HHHHHH---CCCeEEEEeCCCCCCHHHHHHHHHHcCCCCC
Confidence 344544 5688888877766 4678899999997653
No 277
>PRK04017 hypothetical protein; Provisional
Probab=56.65 E-value=61 Score=25.94 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccC-CCCCHHHHHHhcccCCCCCCEEEEEc-CC----C
Q 023179 115 SVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSP-SKATGKILASELPKNGKKKCTVLYPA-SA----K 188 (286)
Q Consensus 115 ~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~-~~~~~e~L~~~L~~~~~~~~rvL~~~-g~----~ 188 (286)
..+++.|.+....+..|++=|+.=.++|++. |+..++.. .......+.+.+.. .++.|+++. .+ .
T Consensus 10 ~e~i~~L~e~s~~g~vIVVEGk~D~~~L~~l------Gv~~~iI~t~g~~~~~~~e~ia~---~~r~VIILTD~D~~Gek 80 (132)
T PRK04017 10 EEIIEELKEFSEAGAPIIVEGKRDVESLRKL------GVEGEIIKVSRTPLAEIAELIAS---RGKEVIILTDFDRKGEE 80 (132)
T ss_pred HHHHHHHHHhcCCCCEEEEeCccHHHHHHHc------CCCccEEEECCeecchHHHHHHh---cCCeEEEEECCCcchHH
Confidence 4456666666566788999999999999999 88654432 22222223233322 335666653 23 3
Q ss_pred ChhHHHHHHHhCCCeeE
Q 023179 189 ASNEIEEGLSNRGFEVV 205 (286)
Q Consensus 189 ~~~~L~~~L~~~G~~V~ 205 (286)
-+..|.+.|+..|+.|+
T Consensus 81 Ir~~l~~~l~~~G~~vd 97 (132)
T PRK04017 81 LAKKLSEYLQGYGIKVD 97 (132)
T ss_pred HHHHHHHHHHhCCCCcc
Confidence 35557777888887653
No 278
>PRK00170 azoreductase; Reviewed
Probab=56.57 E-value=24 Score=29.57 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=35.5
Q ss_pred HHHHHHhC--CCeeEEEEeeeeecCCC------------------------CcHHHHHHcCCCCEEEEeCh-------HH
Q 023179 193 IEEGLSNR--GFEVVRLNTYTTEPVHH------------------------VDQTVLKQALSIPVVAVASP-------SA 239 (286)
Q Consensus 193 L~~~L~~~--G~~V~~~~vY~~~~~~~------------------------~~~~~~~~~~~~d~IvftS~-------sa 239 (286)
+.+.|++. |.+|+.+.+|+...... ...++.+.+...|.|||.|| ..
T Consensus 25 ~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~i~~AD~iV~~sP~y~~~~pa~ 104 (201)
T PRK00170 25 FIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLEEFLAADKIVIAAPMYNFSIPTQ 104 (201)
T ss_pred HHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHHCCEEEEeecccccCCcHH
Confidence 45666666 77887777775542110 01112333567899999997 67
Q ss_pred HHHHHHHhc
Q 023179 240 VRSWVNLIS 248 (286)
Q Consensus 240 v~~~~~~~~ 248 (286)
+++|++.+-
T Consensus 105 LK~~iDrv~ 113 (201)
T PRK00170 105 LKAYIDLIA 113 (201)
T ss_pred HHHHHHhhe
Confidence 899998864
No 279
>TIGR03427 ABC_peri_uca ABC transporter periplasmic binding protein, urea carboxylase region. Members of this family are ABC transporter periplasmic binding proteins associated with the urea carboxylase/allophanate hydrolase pathway, an alternative to urease for urea degradation. The protein is restricted to bacteria with the pathway, with its gene close to the urea carboxylase and allophanate hydrolase genes. The substrate for this transporter therefore is likely to be urea or a compound from which urea is easily derived.
Probab=56.48 E-value=19 Score=33.23 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=50.4
Q ss_pred ccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHH
Q 023179 43 SASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (286)
Q Consensus 43 ~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~ 115 (286)
.+-..|+||+|.+.+.....--+.+.|++.|.+...+-+....+ .+...+| .-+..|+.+...|....
T Consensus 99 ~svaDLKGKkIav~~gs~~~~ll~~aL~~aGL~~~DV~~v~~~~----~d~~aAl-~~G~VDAa~~~eP~~s~ 166 (328)
T TIGR03427 99 KSLADLKGQKVNLVELSVSHYLLARALESVGLSEKDVKVVNTSD----ADIVAAF-ITKDVTAVVTWNPQLSE 166 (328)
T ss_pred CCHHHcCCCEEeccCCChHHHHHHHHHHHcCCCHHHeEEEeCCh----HHHHHHH-hcCCCcEEEEcCchHHH
Confidence 44578999999999988777889999999999865444444432 3345666 45889999988887554
No 280
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=56.45 E-value=21 Score=26.81 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=45.4
Q ss_pred CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC--CccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~--~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
+++.+..+.|+++|..+..+ +.......+++.+.|+.++ --.-=|+||..++..+++.- ....+++++|+.
T Consensus 17 pga~e~l~~L~~~g~~~~~l---TNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~----~~~~~v~vlG~~ 89 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFL---TNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEH----KGGKKVYVLGSD 89 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEE---ES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHH----TTSSEEEEES-H
T ss_pred cCHHHHHHHHHHcCCCEEEE---eCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhc----CCCCEEEEEcCH
Confidence 46778888888888665533 3333222344444454332 22234788888877666542 347889998876
Q ss_pred h-HHHHHHh
Q 023179 138 T-ASIFEEV 145 (286)
Q Consensus 138 T-a~~L~~~ 145 (286)
. .+.|+++
T Consensus 90 ~l~~~l~~~ 98 (101)
T PF13344_consen 90 GLREELREA 98 (101)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 4 4555555
No 281
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=56.41 E-value=9 Score=32.72 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=36.2
Q ss_pred CCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH
Q 023179 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (286)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~ 111 (286)
+.+++.|.+.|+.-++++.++|.-..+. .+.+.++.+..||+||+..-
T Consensus 31 ~~GAd~Ll~~Lr~g~~dv~yMpAH~~q~-----~FPqtme~L~~YDaivlSDi 78 (254)
T COG5426 31 HEGADPLLKALRGGEYDVTYMPAHDAQE-----KFPQTMEGLDAYDAIVLSDI 78 (254)
T ss_pred ccCchHHHHHHhCCCcceEEechHHHHH-----hcchhhhhhcccceEEEeec
Confidence 4568999999999999999999865542 33445556788999998654
No 282
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=56.24 E-value=31 Score=31.97 Aligned_cols=71 Identities=13% Similarity=0.131 Sum_probs=49.5
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEe-ceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVF 117 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~ 117 (286)
.++.|++|+....-+..+.+.+.|++.|+++... ..=.+.. -...++..........++|+-|-.-+|+.-
T Consensus 223 ~~l~~~~v~a~sGIg~P~~F~~~L~~~G~~~~~~~~f~DHh~-yt~~dl~~l~~~a~~~~~iltTeKDaVKl~ 294 (326)
T PF02606_consen 223 EPLKGKPVLAFSGIGNPERFFDTLESLGIEVVGTLAFPDHHR-YTEQDLEKLEAEAKAAGIILTTEKDAVKLP 294 (326)
T ss_pred hhccCCeeEEEEEcCChHHHHHHHHHcCCeEEEeeECCCCCC-CCHHHHHHHHHhhcccceEEecHHHHhhCh
Confidence 4588999999999999999999999999998843 3333322 222344444432233348999999999843
No 283
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=55.42 E-value=32 Score=29.45 Aligned_cols=71 Identities=11% Similarity=0.060 Sum_probs=39.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCC--CchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC---CcEEEEECh
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGP--DTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP---NVRIGVVGA 136 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~--~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~---~~~i~aVG~ 136 (286)
-+.+.|+++|.++.. .+...... ..+.+.+.++.....|+|+.++...+..+++.+.+.+.. ++.+++.+.
T Consensus 138 gf~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~p~di~v~g~d~ 213 (266)
T cd06282 138 GYRAAMRAAGLAPLP--PVEIPFNTAALPSALLALLTAHPAPTAIFCSNDLLALAVIRALRRLGLRVPDDLSVVGFDG 213 (266)
T ss_pred HHHHHHHHcCCCCCc--cccCCCcHHHHHHHHHHHhcCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEeecc
Confidence 345667777765432 11111111 123344444333457889988888777788888887753 455666554
No 284
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=55.21 E-value=99 Score=26.90 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=37.7
Q ss_pred CCCCEEEEeChHHHH----HHHHHhccccCCCceEEEeC----HHHHHHHHHcCCCeEEeCCCCC
Q 023179 227 LSIPVVAVASPSAVR----SWVNLISDTEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPG 283 (286)
Q Consensus 227 ~~~d~IvftS~sav~----~~~~~~~~~~~~~~~iv~IG----~~Ta~~l~~~G~~~v~~~~~ps 283 (286)
.+.|+|++-||+.+- .--+.+.+ .+.+.+.|| .+..+.+++.|+.-+++..+|-
T Consensus 59 ~~pDfvi~isPNpaaPGP~kARE~l~~---s~~PaiiigDaPg~~vkdeleeqGlGYIivk~Dpm 120 (277)
T COG1927 59 FNPDFVIYISPNPAAPGPKKAREILSD---SDVPAIIIGDAPGLKVKDELEEQGLGYIIVKADPM 120 (277)
T ss_pred cCCCEEEEeCCCCCCCCchHHHHHHhh---cCCCEEEecCCccchhHHHHHhcCCeEEEecCCcc
Confidence 478999999986531 11122221 257788775 5788999999999888887763
No 285
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=55.05 E-value=54 Score=28.29 Aligned_cols=73 Identities=15% Similarity=0.125 Sum_probs=40.6
Q ss_pred HHHHHHHHhC-CCcEEEeceEEeeeCC-C-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC-CcEEEEEChh
Q 023179 63 GKLIKALAKH-RIDCLELPLIQHAQGP-D-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAG 137 (286)
Q Consensus 63 ~~l~~~L~~~-G~~v~~~P~~~~~~~~-~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~-~~~i~aVG~~ 137 (286)
.-+.+.++++ |+.+.. .+...... + .+.+...+.....+|+|++.+-..+..+.+.+.+.|.. .+.+++.+..
T Consensus 143 ~gf~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~~a~g~~~~l~~~g~~~di~vig~d~~ 219 (273)
T cd06310 143 EGFLEGLKEYPGIEIVA--TQYSDSDYAKALDITEDLLTANPDLKGIFGANEGSAVGAARAVRQAGKAGKVKVVGFDAS 219 (273)
T ss_pred HHHHHHHHhCCCcEEEe--cccCCcCHHHHHHHHHHHHHhCCCceEEEecCchhHHHHHHHHHhcCCCCCeEEEEeCCC
Confidence 3455677777 665543 11111000 0 12333444333457888888888777778888877763 5566666554
No 286
>PRK06490 glutamine amidotransferase; Provisional
Probab=55.03 E-value=1e+02 Score=27.04 Aligned_cols=94 Identities=11% Similarity=-0.046 Sum_probs=53.4
Q ss_pred CCeEEEeCCCC--chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH-H-------HHHHH
Q 023179 50 NPKVVVTRERG--KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-G-------SVFLE 119 (286)
Q Consensus 50 g~~VLitR~~~--~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a-v-------~~~~~ 119 (286)
.++|++.+..+ ....+.+.|++.|.++..+....-.+.++ .+.+||.+|+|-... + ....+
T Consensus 7 ~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~---------~l~~~dgvii~Ggp~~~~d~~~wi~~~~~ 77 (239)
T PRK06490 7 KRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPD---------TLEDHAGAVIFGGPMSANDPDDFIRREID 77 (239)
T ss_pred CceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCC---------cccccCEEEEECCCCCCCCCchHHHHHHH
Confidence 57888886654 45789999999999887553332222121 346789988884322 1 11122
Q ss_pred HHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceecc
Q 023179 120 AWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFS 158 (286)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~ 158 (286)
.+.+.-..+++++.|.=+-.-..+.. |-++.-.
T Consensus 78 ~i~~~~~~~~PvLGIC~G~Qlla~al------GG~V~~~ 110 (239)
T PRK06490 78 WISVPLKENKPFLGICLGAQMLARHL------GARVAPH 110 (239)
T ss_pred HHHHHHHCCCCEEEECHhHHHHHHHc------CCEeecC
Confidence 22211123677876666655555555 7666443
No 287
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=54.69 E-value=49 Score=31.43 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=27.8
Q ss_pred CCCCCCeEEEeCCC-----------------CchHHHHHHHHhCCCcEEEe
Q 023179 46 ASNSNPKVVVTRER-----------------GKNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 46 ~~l~g~~VLitR~~-----------------~~~~~l~~~L~~~G~~v~~~ 79 (286)
.++.|++||||-.. ..+..+++.|..+|++|..+
T Consensus 181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~ 231 (390)
T TIGR00521 181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLI 231 (390)
T ss_pred cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEe
Confidence 45889999999773 25689999999999998764
No 288
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=53.95 E-value=1.2e+02 Score=24.96 Aligned_cols=88 Identities=19% Similarity=0.060 Sum_probs=53.7
Q ss_pred EEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHHcCCCCc
Q 023179 54 VVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAGTPNV 129 (286)
Q Consensus 54 LitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l~~~~~~~~ 129 (286)
++-+...-...+.+.|++.|+++..+|.-... +.+ ..+..+|.||++ |+.....+.. +.+.-..+.
T Consensus 3 ~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~-----~~~----~~~~~~dgvil~gG~~~~~~~~~~~~-i~~~~~~~~ 72 (184)
T cd01743 3 LIDNYDSFTYNLVQYLRELGAEVVVVRNDEIT-----LEE----LELLNPDAIVISPGPGHPEDAGISLE-IIRALAGKV 72 (184)
T ss_pred EEeCCCccHHHHHHHHHHcCCceEEEeCCCCC-----HHH----HhhcCCCEEEECCCCCCcccchhHHH-HHHHHhcCC
Confidence 34466667788999999999999888773321 111 134679998875 4332221222 211112468
Q ss_pred EEEEEChhhHHHHHHhhhccCCCCceec
Q 023179 130 RIGVVGAGTASIFEEVIQSSKCSLDVAF 157 (286)
Q Consensus 130 ~i~aVG~~Ta~~L~~~~~~~~~G~~~~~ 157 (286)
++..|.-+-.-..+.. |-++.-
T Consensus 73 PvlGIC~G~Qlla~~~------Gg~v~~ 94 (184)
T cd01743 73 PILGVCLGHQAIAEAF------GGKVVR 94 (184)
T ss_pred CEEEECHhHHHHHHHh------CCEEEe
Confidence 8988888776666666 766543
No 289
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=53.76 E-value=23 Score=27.88 Aligned_cols=50 Identities=16% Similarity=0.205 Sum_probs=34.8
Q ss_pred chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc-CCCccEEEEeCHHHH
Q 023179 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTIFDWIIITSPEAG 114 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~-~~~~d~IvFTS~~av 114 (286)
....+.+.|++.|+++....+.. .|.+.+.+.++. ...+|.||.|...++
T Consensus 19 ~~~~l~~~l~~~G~~~~~~~~v~----Dd~~~I~~~l~~~~~~~dliittGG~g~ 69 (135)
T smart00852 19 NGPALAELLTELGIEVTRYVIVP----DDKEAIKEALREALERADLVITTGGTGP 69 (135)
T ss_pred cHHHHHHHHHHCCCeEEEEEEeC----CCHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence 45689999999999988766653 344556665543 356898888876663
No 290
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=53.58 E-value=90 Score=23.17 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=41.3
Q ss_pred CCeEEEeCCCCch-----HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc
Q 023179 50 NPKVVVTRERGKN-----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (286)
Q Consensus 50 g~~VLitR~~~~~-----~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~ 124 (286)
.++||+....+-+ .++.+.++++|+++. +...+ ..++... ..++| +|+++|+-.. .++.+++.
T Consensus 3 ~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~------v~a~~-~~~~~~~---~~~~D-vill~pqi~~-~~~~i~~~ 70 (95)
T TIGR00853 3 ETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVK------IAAGS-YGAAGEK---LDDAD-VVLLAPQVAY-MLPDLKKE 70 (95)
T ss_pred ccEEEEECCCchhHHHHHHHHHHHHHHCCCcEE------EEEec-HHHHHhh---cCCCC-EEEECchHHH-HHHHHHHH
Confidence 4788888877632 466667778888743 32222 1223332 35688 6666666544 34444432
Q ss_pred C-CCCcEEEEEChh
Q 023179 125 G-TPNVRIGVVGAG 137 (286)
Q Consensus 125 ~-~~~~~i~aVG~~ 137 (286)
- ..++++..|.+.
T Consensus 71 ~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 71 TDKKGIPVEVINGA 84 (95)
T ss_pred hhhcCCCEEEeChh
Confidence 1 124566666543
No 291
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=53.55 E-value=13 Score=32.85 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=30.5
Q ss_pred CccEEEEeCHHHHHHHHHHHHHcC-CCCcEEEEEChhh----HHHHHHhhhccCCCCceeccCC
Q 023179 102 IFDWIIITSPEAGSVFLEAWKEAG-TPNVRIGVVGAGT----ASIFEEVIQSSKCSLDVAFSPS 160 (286)
Q Consensus 102 ~~d~IvFTS~~av~~~~~~l~~~~-~~~~~i~aVG~~T----a~~L~~~~~~~~~G~~~~~~~~ 160 (286)
+.|++||.|||++.---...++.. ..++++++||... .+.|++. |+--.+++.
T Consensus 59 ~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~~------g~GYIivk~ 116 (276)
T PF01993_consen 59 DPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKKAKDALEEE------GFGYIIVKA 116 (276)
T ss_dssp --SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHHHHT------T-EEEEETT
T ss_pred CCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHHHhc------CCcEEEEec
Confidence 689999999999765333332221 1477888877665 6777777 887766653
No 292
>PLN02645 phosphoglycolate phosphatase
Probab=53.53 E-value=78 Score=28.80 Aligned_cols=74 Identities=14% Similarity=0.201 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCC--hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccCCC
Q 023179 177 KKCTVLYPASAKA--SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWS 254 (286)
Q Consensus 177 ~~~rvL~~~g~~~--~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~ 254 (286)
.|+++.++.++.. ...+.+.|+..|+++ ..+ -+++|...+..++......+ .
T Consensus 59 ~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~-----------------------~~~-~I~ts~~~~~~~l~~~~~~~--~ 112 (311)
T PLN02645 59 MGKKLVFVTNNSTKSRAQYGKKFESLGLNV-----------------------TEE-EIFSSSFAAAAYLKSINFPK--D 112 (311)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHCCCCC-----------------------Chh-hEeehHHHHHHHHHhhccCC--C
Confidence 4578887776552 455667777777611 111 26788888887777543211 2
Q ss_pred ceEEEeCH-HHHHHHHHcCCCeE
Q 023179 255 NSVACIGE-TTASAAKRLGLKNV 276 (286)
Q Consensus 255 ~~iv~IG~-~Ta~~l~~~G~~~v 276 (286)
.+++++|. ...+.++++|+..+
T Consensus 113 ~~V~viG~~~~~~~l~~~Gi~~~ 135 (311)
T PLN02645 113 KKVYVIGEEGILEELELAGFQYL 135 (311)
T ss_pred CEEEEEcCHHHHHHHHHCCCEEe
Confidence 35777775 46788888898653
No 293
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=53.27 E-value=86 Score=27.82 Aligned_cols=198 Identities=14% Similarity=0.103 Sum_probs=102.1
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-HHHHHHHHHHHcCCC--
Q 023179 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-AGSVFLEAWKEAGTP-- 127 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~-av~~~~~~l~~~~~~-- 127 (286)
|+|||.-+..++.++++.|.+.|. + .+++..-... +.+ .......-+.+-+- ....+.+.+.+++.+
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~-v-~~sv~t~~g~-------~~~-~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~v 70 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY-V-IVSVATSYGG-------ELL-KPELPGLEVRVGRLGDEEGLAEFLRENGIDAV 70 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC-E-EEEEEhhhhH-------hhh-ccccCCceEEECCCCCHHHHHHHHHhCCCcEE
Confidence 789999999999999999999998 3 3332222110 001 11111223344443 444455544444431
Q ss_pred ---CcEEEE-EChhhHHHHHHhhhccCCCCceecc--CC-----------CCCHHHHHHhcccCCCCCCEEEEEcCCCCh
Q 023179 128 ---NVRIGV-VGAGTASIFEEVIQSSKCSLDVAFS--PS-----------KATGKILASELPKNGKKKCTVLYPASAKAS 190 (286)
Q Consensus 128 ---~~~i~a-VG~~Ta~~L~~~~~~~~~G~~~~~~--~~-----------~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~ 190 (286)
.-+++. |-....++.++. |+...-. |. -.+.++.++.+.+. .+++|++..|.+.-
T Consensus 71 IDATHPfA~~is~na~~a~~~~------~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l~~~--~~~~iflttGsk~L 142 (249)
T PF02571_consen 71 IDATHPFAAEISQNAIEACREL------GIPYLRFERPSWQPEPDDNWHYVDSYEEAAELLKEL--GGGRIFLTTGSKNL 142 (249)
T ss_pred EECCCchHHHHHHHHHHHHhhc------CcceEEEEcCCcccCCCCeEEEeCCHHHHHHHHhhc--CCCCEEEeCchhhH
Confidence 222221 334444555555 5543111 10 13566666666543 34799999987765
Q ss_pred hHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEe---CH----H
Q 023179 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI---GE----T 263 (286)
Q Consensus 191 ~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~I---G~----~ 263 (286)
..+.. +...+ ..+|-++.+....+ + -+...++|..--|.+.+.=.+++++. +..+++. |. .
T Consensus 143 ~~f~~-~~~~~-----~r~~~RvLp~~~~~--~-g~~~~~iia~~GPfs~e~n~al~~~~---~i~~lVtK~SG~~g~~e 210 (249)
T PF02571_consen 143 PPFVP-APLPG-----ERLFARVLPTPESA--L-GFPPKNIIAMQGPFSKELNRALFRQY---GIDVLVTKESGGSGFDE 210 (249)
T ss_pred HHHhh-cccCC-----CEEEEEECCCcccc--C-CCChhhEEEEeCCCCHHHHHHHHHHc---CCCEEEEcCCCchhhHH
Confidence 55443 22222 44555555443321 0 12467788877777766444444432 2333322 11 2
Q ss_pred HHHHHHHcCCCeEEe
Q 023179 264 TASAAKRLGLKNVYY 278 (286)
Q Consensus 264 Ta~~l~~~G~~~v~~ 278 (286)
=.++++++|+..+++
T Consensus 211 Ki~AA~~lgi~vivI 225 (249)
T PF02571_consen 211 KIEAARELGIPVIVI 225 (249)
T ss_pred HHHHHHHcCCeEEEE
Confidence 235678899987543
No 294
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=53.06 E-value=1e+02 Score=25.50 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=45.0
Q ss_pred EEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH-H--------HHHHHHHHHc
Q 023179 54 VVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-G--------SVFLEAWKEA 124 (286)
Q Consensus 54 LitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a-v--------~~~~~~l~~~ 124 (286)
|.++.......+.+.|++.|...+.+..++...... ...+..+|.||++-... + +.+.+.+...
T Consensus 5 l~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-------~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~ 77 (188)
T cd01741 5 LQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAGEL-------LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQA 77 (188)
T ss_pred EECCCCCCcchHHHHHHhcCCCCceEEEEecCCCCC-------CCCcccCCEEEECCCCccCCccCChHHHHHHHHHHHH
Confidence 334444446788999999985333333333332111 12467899999997543 2 1122222221
Q ss_pred CCCCcEEEEEChhhHHHHHHh
Q 023179 125 GTPNVRIGVVGAGTASIFEEV 145 (286)
Q Consensus 125 ~~~~~~i~aVG~~Ta~~L~~~ 145 (286)
...+.+++.|.-+-.-.....
T Consensus 78 ~~~~~pilgiC~G~q~l~~~l 98 (188)
T cd01741 78 LAAGKPVLGICLGHQLLARAL 98 (188)
T ss_pred HHCCCCEEEECccHHHHHHHh
Confidence 123577776666664444444
No 295
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=53.03 E-value=29 Score=31.29 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=31.0
Q ss_pred EEeChHHHHHHHHHhccccCCCceEEEeCHHHH-HHHHHcCCCeEE
Q 023179 233 AVASPSAVRSWVNLISDTEQWSNSVACIGETTA-SAAKRLGLKNVY 277 (286)
Q Consensus 233 vftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta-~~l~~~G~~~v~ 277 (286)
++||..+...++..... ..+++.||+.-- +.++.+|+..+-
T Consensus 74 i~TS~~at~~~l~~~~~----~~kv~viG~~~l~~~l~~~G~~~~~ 115 (269)
T COG0647 74 IVTSGDATADYLAKQKP----GKKVYVIGEEGLKEELEGAGFELVD 115 (269)
T ss_pred eecHHHHHHHHHHhhCC----CCEEEEECCcchHHHHHhCCcEEec
Confidence 78999999988876432 368888886554 788889987653
No 296
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=52.89 E-value=54 Score=28.41 Aligned_cols=46 Identities=24% Similarity=0.191 Sum_probs=24.9
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC-CcEEEEEChhh
Q 023179 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAGT 138 (286)
Q Consensus 93 l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~-~~~i~aVG~~T 138 (286)
+.+.|+....+|.|+..+-.....+.+.+.+.+.. ++.++..+...
T Consensus 170 ~~~~l~~~~~~~~i~~~~d~~a~~~~~al~~~g~~~di~vig~d~~~ 216 (271)
T cd06314 170 AEDALNAHPDLKCMFGLYAYNGPAIAEAVKAAGKLGKVKIVGFDEDP 216 (271)
T ss_pred HHHHHHhCCCccEEEecCCccHHHHHHHHHHcCCCCceEEEEeCCCH
Confidence 44444333456777665555555556666666553 45555555543
No 297
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=52.88 E-value=82 Score=28.17 Aligned_cols=44 Identities=18% Similarity=0.158 Sum_probs=23.6
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEECh
Q 023179 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGA 136 (286)
Q Consensus 93 l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~ 136 (286)
+...|+....+|+|+.++-.-+...++.+.+.+. +++.++..+.
T Consensus 229 ~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~disv~gfd~ 275 (328)
T PRK11303 229 FEKWLETHPMPDALFTTSYTLLQGVLDVLLERPGELPSDLAIATFGD 275 (328)
T ss_pred HHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEeCC
Confidence 3344432234677777766555556666666554 2455555543
No 298
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=52.51 E-value=50 Score=27.41 Aligned_cols=58 Identities=17% Similarity=0.116 Sum_probs=39.9
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
..+.|++|||.-..+- ...+++.|.++|+++..+- . ..+++.+.+ ...|.||.+++..
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~---r----~~~~l~~~l---~~aDiVIsat~~~ 98 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCH---S----KTKNLKEHT---KQADIVIVAVGKP 98 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEE---C----CchhHHHHH---hhCCEEEEcCCCC
Confidence 4688999999988764 5669999999998643222 1 123444444 6688888777665
No 299
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=52.43 E-value=48 Score=26.76 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=33.7
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC
Q 023179 48 NSNPKVVVTRERGKNGKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (286)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS 110 (286)
|.|-+|+-|... ++.|+++ |+.+..+ + ..+......+...+ .-+.+|.||+|.
T Consensus 30 l~Gf~l~AT~gT------a~~L~~~~Gi~v~~v--i-~~~~gg~~~i~~~I-~~g~i~lVInt~ 83 (142)
T PRK05234 30 LEQHELYATGTT------GGLIQEATGLDVTRL--L-SGPLGGDQQIGALI-AEGKIDMLIFFR 83 (142)
T ss_pred hcCCEEEEeChH------HHHHHhccCCeeEEE--E-cCCCCCchhHHHHH-HcCceeEEEEec
Confidence 457777777654 3567788 8887665 1 12211224466666 458999999996
No 300
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=52.36 E-value=1e+02 Score=26.78 Aligned_cols=78 Identities=13% Similarity=0.011 Sum_probs=44.9
Q ss_pred CCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCC-ccEEEEeCHHHHHHHHH-HHHHcCCCCcEEE
Q 023179 57 RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTI-FDWIIITSPEAGSVFLE-AWKEAGTPNVRIG 132 (286)
Q Consensus 57 R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~-~d~IvFTS~~av~~~~~-~l~~~~~~~~~i~ 132 (286)
++-+...++.+.|+++|..+..+.- ... ....+.+.++. +.. +--.|+||.......+. .+.+.+.+..+++
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN-~~~---~~~~~~~~L~~~gl~~~~~~~Ii~s~~~~~~~l~~~~~~~~~~~~~~~ 99 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSN-SPR---NIFSLHKTLKSLGINADLPEMIISSGEIAVQMILESKKRFDIRNGIIY 99 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeC-CCC---ChHHHHHHHHHCCCCccccceEEccHHHHHHHHHhhhhhccCCCceEE
Confidence 4456788999999999998876544 111 11222233333 232 22366777765444433 3334445567799
Q ss_pred EEChhh
Q 023179 133 VVGAGT 138 (286)
Q Consensus 133 aVG~~T 138 (286)
.+|...
T Consensus 100 ~vGd~~ 105 (242)
T TIGR01459 100 LLGHLE 105 (242)
T ss_pred EeCCcc
Confidence 999865
No 301
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=52.26 E-value=57 Score=27.49 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=26.5
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChhh
Q 023179 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGT 138 (286)
Q Consensus 93 l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~T 138 (286)
+.+.+......|.|+.++-.....+.+.+.+.+. .++.+++.+...
T Consensus 169 ~~~~l~~~~~~~~i~~~~~~~a~~~~~~~~~~g~~i~~~i~i~~~d~~~ 217 (264)
T cd01537 169 AEELLTAHPDPTAIFAANDDMALGALRALREAGLRVPDDISVIGFDGTP 217 (264)
T ss_pred HHHHHhcCCCCCEEEEcCcHHHHHHHHHHHHhCCCCCCCeEEEeecCcc
Confidence 3344433334788888776555556666776665 355566555444
No 302
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=52.09 E-value=47 Score=31.53 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=48.0
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC
Q 023179 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (286)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS 110 (286)
-.|.+||+.....-+..+.+.++.+|+++..+-.=--+ ..+.+.+++.|+...+++.|.+|=
T Consensus 78 ~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~-~v~p~~v~~~L~~~~~~~~V~~vH 139 (383)
T COG0075 78 EPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGE-AVDPEEVEEALDKDPDIKAVAVVH 139 (383)
T ss_pred CCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCC-CCCHHHHHHHHhcCCCccEEEEEe
Confidence 35889999999988999999999999999865443222 224578888886567888998873
No 303
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=52.07 E-value=2.5e+02 Score=27.91 Aligned_cols=114 Identities=11% Similarity=0.135 Sum_probs=66.2
Q ss_pred CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 023179 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (286)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~ 207 (286)
+..++.-.-+|++.|+++. .+.|+.+ +.++-+++..|......+.++.++.....-..+..
T Consensus 64 ~~dviIsrG~ta~~i~~~~-----~iPVv~i--~~s~~Dil~al~~a~~~~~~iavv~~~~~~~~~~~------------ 124 (538)
T PRK15424 64 RCDAIIAAGSNGAYLKSRL-----SVPVILI--KPSGFDVMQALARARKLTSSIGVVTYQETIPALVA------------ 124 (538)
T ss_pred CCcEEEECchHHHHHHhhC-----CCCEEEe--cCCHhHHHHHHHHHHhcCCcEEEEecCcccHHHHH------------
Confidence 5677777788999999985 6666555 34666677777544333456666655443222111
Q ss_pred EeeeeecCCCCcHHHHHHc-CCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeEE
Q 023179 208 NTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVY 277 (286)
Q Consensus 208 ~vY~~~~~~~~~~~~~~~~-~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v~ 277 (286)
+.+.+ -.++...+.+...++..+..+++. +..+++-|-.+.+.++++|.+.++
T Consensus 125 --------------~~~~l~~~i~~~~~~~~~e~~~~v~~lk~~---G~~~vvG~~~~~~~A~~~g~~g~~ 178 (538)
T PRK15424 125 --------------FQKTFNLRIEQRSYVTEEDARGQINELKAN---GIEAVVGAGLITDLAEEAGMTGIF 178 (538)
T ss_pred --------------HHHHhCCceEEEEecCHHHHHHHHHHHHHC---CCCEEEcCchHHHHHHHhCCceEE
Confidence 11111 245556666666666666655543 455555555666666777766554
No 304
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=51.86 E-value=1.3e+02 Score=25.55 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHhcccC--CCCCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeCh
Q 023179 165 KILASELPKN--GKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 165 e~L~~~L~~~--~~~~~rvL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~ 237 (286)
..|...++.. .....++++.+... +...+...|+..|++| +..=..++.+...+.+.+ .++|+|.++..
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~v--i~LG~~vp~e~~v~~~~~--~~pd~v~lS~~ 144 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDV--IDLGRDVPIDTVVEKVKK--EKPLMLTGSAL 144 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEE--EECCCCCCHHHHHHHHHH--cCCCEEEEccc
Q ss_pred -----HHHHHHHHHhcccc-CCCceEEEeC-HHHHHHHHHcC
Q 023179 238 -----SAVRSWVNLISDTE-QWSNSVACIG-ETTASAAKRLG 272 (286)
Q Consensus 238 -----sav~~~~~~~~~~~-~~~~~iv~IG-~~Ta~~l~~~G 272 (286)
..++.+.+.+++.. ..+.++++=| +.+.+.+++.|
T Consensus 145 ~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~~~~~~~~g 186 (197)
T TIGR02370 145 MTTTMYGQKDINDKLKEEGYRDSVKFMVGGAPVTQDWADKIG 186 (197)
T ss_pred cccCHHHHHHHHHHHHHcCCCCCCEEEEEChhcCHHHHHHhC
No 305
>PRK12742 oxidoreductase; Provisional
Probab=51.79 E-value=88 Score=26.40 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=25.6
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEE
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~ 78 (286)
++.|++||||-... =+..+++.|.++|++++.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~ 35 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRF 35 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 46789999997654 467899999999998763
No 306
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=51.74 E-value=1.1e+02 Score=25.98 Aligned_cols=91 Identities=15% Similarity=0.244 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEEEEeCh-----HHHHHHHH
Q 023179 178 KCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASP-----SAVRSWVN 245 (286)
Q Consensus 178 ~~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~IvftS~-----sav~~~~~ 245 (286)
+.++++.+.... ...+...|+..|++|..+- ...+ .+++.+. ..++|+|.+++. ..++.+.+
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG--~~~p----~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~ 155 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG--RDVP----PEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIE 155 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC--CCCC----HHHHHHHHHHcCCCEEEEeccccccHHHHHHHHH
Confidence 457877766543 4456788999999883332 2222 2333332 258898888763 34455555
Q ss_pred Hhcccc-CCCceEEEeCHHH-HHHHHHcCCC
Q 023179 246 LISDTE-QWSNSVACIGETT-ASAAKRLGLK 274 (286)
Q Consensus 246 ~~~~~~-~~~~~iv~IG~~T-a~~l~~~G~~ 274 (286)
.+++.. ..+.++++-|+.. .+.+++.|..
T Consensus 156 ~lr~~~~~~~~~i~vGG~~~~~~~~~~~GaD 186 (201)
T cd02070 156 ALKEAGLRDKVKVMVGGAPVNQEFADEIGAD 186 (201)
T ss_pred HHHHCCCCcCCeEEEECCcCCHHHHHHcCCc
Confidence 555543 1257788887544 4455666744
No 307
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=51.72 E-value=1.2e+02 Score=24.87 Aligned_cols=9 Identities=0% Similarity=0.106 Sum_probs=4.4
Q ss_pred CCCEEEEeC
Q 023179 228 SIPVVAVAS 236 (286)
Q Consensus 228 ~~d~IvftS 236 (286)
.+|.|+|-+
T Consensus 44 ~~d~ii~gs 52 (167)
T TIGR01752 44 AYDKLILGT 52 (167)
T ss_pred hCCEEEEEe
Confidence 444555444
No 308
>PRK09739 hypothetical protein; Provisional
Probab=51.23 E-value=40 Score=28.47 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCC----------------CchHHHHHHhcCCCccEEEEeCHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGP----------------DTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~----------------~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
+.+.+.+++.|.++..+-++.....+ ..+.+.+..+.+...|.|||.+|.
T Consensus 24 ~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~ 89 (199)
T PRK09739 24 EAIHQRAQERGHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDALVFVFPL 89 (199)
T ss_pred HHHHHHHHHCCCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCEEEEECch
Confidence 45556667788888877766542111 023345555566788999999984
No 309
>PRK08339 short chain dehydrogenase; Provisional
Probab=50.48 E-value=1e+02 Score=26.90 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=44.5
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEAW 121 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv----FTS~~av~~~~~~l 121 (286)
.+.|+.+|||-... -+..+++.|.++|++|+.+- +. . ...+.+.+.+......+..+ ++++.+++.+++.+
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~--r~-~-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLS--RN-E-ENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKEL 80 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe--CC-H-HHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 46789999997754 46789999999999876431 11 0 11122223332211222222 48888998888877
Q ss_pred HHc
Q 023179 122 KEA 124 (286)
Q Consensus 122 ~~~ 124 (286)
.+.
T Consensus 81 ~~~ 83 (263)
T PRK08339 81 KNI 83 (263)
T ss_pred Hhh
Confidence 543
No 310
>PRK03094 hypothetical protein; Provisional
Probab=50.48 E-value=28 Score=25.32 Aligned_cols=63 Identities=19% Similarity=0.290 Sum_probs=36.4
Q ss_pred CChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhcccc-CCCceEEEeCHHHHH
Q 023179 188 KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTE-QWSNSVACIGETTAS 266 (286)
Q Consensus 188 ~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~-~~~~~iv~IG~~Ta~ 266 (286)
.+-.++.+.|+++|.+|..+.-|.. ...+|++++|.-.. ++ +.-.. ..+.+++.-.-.|++
T Consensus 8 ~~Ls~i~~~L~~~GYeVv~l~~~~~-------------~~~~Da~VitG~d~--n~---mgi~d~~t~~pVI~A~G~Tae 69 (80)
T PRK03094 8 QSLTDVQQALKQKGYEVVQLRSEQD-------------AQGCDCCVVTGQDS--NV---MGIADTSTKGSVITASGLTAD 69 (80)
T ss_pred cCcHHHHHHHHHCCCEEEecCcccc-------------cCCcCEEEEeCCCc--ce---ecccccccCCcEEEcCCCCHH
Confidence 3556799999999988765542211 35789999887321 11 11111 124667766555554
Q ss_pred HH
Q 023179 267 AA 268 (286)
Q Consensus 267 ~l 268 (286)
.+
T Consensus 70 EI 71 (80)
T PRK03094 70 EI 71 (80)
T ss_pred HH
Confidence 44
No 311
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=50.20 E-value=72 Score=27.88 Aligned_cols=82 Identities=11% Similarity=0.012 Sum_probs=48.7
Q ss_pred EEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH------------HH-HHHH
Q 023179 54 VVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG------------SV-FLEA 120 (286)
Q Consensus 54 LitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av------------~~-~~~~ 120 (286)
|..-......++...|++.|+++..++.-.... . . ..+.+||.||+...... +. +.+.
T Consensus 4 l~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~--~------~-~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~ 74 (238)
T cd01740 4 LRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLA--G------R-KDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLMEE 74 (238)
T ss_pred EEcCCcCCHHHHHHHHHHcCCCEEEEeccCCcc--c------c-CCHhhCCEEEECCCCCcccccccccccccChhHHHH
Confidence 333334445678899999999999777643211 0 0 12467899999876321 10 2233
Q ss_pred HHHcCCCCcEEEEEChhhHHHHHHh
Q 023179 121 WKEAGTPNVRIGVVGAGTASIFEEV 145 (286)
Q Consensus 121 l~~~~~~~~~i~aVG~~Ta~~L~~~ 145 (286)
+.+....+.+++.|..+. +.|-+.
T Consensus 75 l~~~~~~g~pvlGIC~G~-QlL~~~ 98 (238)
T cd01740 75 VKEFAERGGLVLGICNGF-QILVEL 98 (238)
T ss_pred HHHHHhCCCeEEEECcHH-HHHHHc
Confidence 333223478888888665 577666
No 312
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=49.80 E-value=1.9e+02 Score=25.74 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=36.6
Q ss_pred CCCCEEEEeChHH-------HHHHHHHhccccCCCceEEEeC----HHHHHHHHHcCCCeEEeCCCCC
Q 023179 227 LSIPVVAVASPSA-------VRSWVNLISDTEQWSNSVACIG----ETTASAAKRLGLKNVYYPTHPG 283 (286)
Q Consensus 227 ~~~d~IvftS~sa-------v~~~~~~~~~~~~~~~~iv~IG----~~Ta~~l~~~G~~~v~~~~~ps 283 (286)
-++|.+++.||+. ++.++... +.+.++|| ....+++++.||--++++-+|=
T Consensus 59 ~~pDf~i~isPN~a~PGP~~ARE~l~~~------~iP~IvI~D~p~~K~~d~l~~~g~GYIivk~DpM 120 (277)
T PRK00994 59 WKPDFVIVISPNPAAPGPKKAREILKAA------GIPCIVIGDAPGKKVKDAMEEQGLGYIIVKADPM 120 (277)
T ss_pred hCCCEEEEECCCCCCCCchHHHHHHHhc------CCCEEEEcCCCccchHHHHHhcCCcEEEEecCcc
Confidence 3899999999984 44333322 46777775 3445899999999888887763
No 313
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=49.79 E-value=45 Score=28.86 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC-CCcEEEEECh
Q 023179 92 RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT-PNVRIGVVGA 136 (286)
Q Consensus 92 ~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~-~~~~i~aVG~ 136 (286)
.+.+.|+....+|+|+.++-..+..+.+.+.+.+. .++.+++.+.
T Consensus 172 ~~~~~l~~~~~~~aI~~~~d~~a~g~~~al~~~g~~~dv~vvg~d~ 217 (270)
T cd06308 172 KMEELLQANPDIDLVYAHNDPMALGAYLAAKRAGREKEIKFIGIDG 217 (270)
T ss_pred HHHHHHHhCCCCcEEEeCCcHHHHHHHHHHHHcCCCCCcEEEEecC
Confidence 34455544445778777777777677777777766 3556666643
No 314
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=49.77 E-value=2.3e+02 Score=26.72 Aligned_cols=147 Identities=24% Similarity=0.217 Sum_probs=86.5
Q ss_pred EeCHHHHHHHHHHHHHcCCCCcEEE-EEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcC
Q 023179 108 ITSPEAGSVFLEAWKEAGTPNVRIG-VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPAS 186 (286)
Q Consensus 108 FTS~~av~~~~~~l~~~~~~~~~i~-aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g 186 (286)
|-.+..++.+.+.+.+..-...+|. +-|.+|... -++ |++. +.|+. . +.+ ..+|++|.+.-.
T Consensus 7 ~r~~~~~~~l~~~i~~~~~r~~~iMeVCGtHt~aI-~r~------Gir~-lLP~~--i----eli---sGPGCPVCVtp~ 69 (364)
T PRK15062 7 FRDPELARALLEEIRKLATRPLRIMEVCGGHTHAI-FRY------GLRS-LLPEN--I----ELI---HGPGCPVCVTPM 69 (364)
T ss_pred hcCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHH-HHh------ChHh-hCCCC--c----EEe---cCCCCCcEeCcH
Confidence 5567778888887766533356665 678888665 456 8875 44432 1 122 237888888765
Q ss_pred CCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH-cCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeC----
Q 023179 187 AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIG---- 261 (286)
Q Consensus 187 ~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~-~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG---- 261 (286)
.....-+ .|.... .|+.+.-=++-..+-....+.+. ....|+=+++||.-+-.+....+. ..+.+++||
T Consensus 70 ~~ID~ai--~La~~~-~vi~~TfGDmlRVPGs~~SL~~ara~GadVriVYSpldAl~iA~~nP~---k~vVF~avGFETT 143 (364)
T PRK15062 70 GRIDAAI--ELASRP-GVILCTFGDMLRVPGSKGSLLEAKAEGADVRIVYSPLDALKIARENPD---KEVVFFAIGFETT 143 (364)
T ss_pred HHHHHHH--HHhCCC-CeEEEeccccccCCCCcCCHHHHHhCCCCEEEEeCHHHHHHHHHHCCC---CeEEEEecCchhc
Confidence 4433222 233221 23223222333344433333332 468999999999988888776653 247777887
Q ss_pred -HHHHHHHHH---cCCCeEE
Q 023179 262 -ETTASAAKR---LGLKNVY 277 (286)
Q Consensus 262 -~~Ta~~l~~---~G~~~v~ 277 (286)
|.||..+.+ .|+++..
T Consensus 144 aP~~A~~i~~A~~~~~~Nfs 163 (364)
T PRK15062 144 APATAATLLQAKAEGLKNFS 163 (364)
T ss_pred cHHHHHHHHHHHHcCCCCEE
Confidence 666766555 7777753
No 315
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=49.67 E-value=2.2e+02 Score=26.47 Aligned_cols=84 Identities=14% Similarity=0.191 Sum_probs=47.7
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcC--C-CCEEEEe
Q 023179 164 GKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL--S-IPVVAVA 235 (286)
Q Consensus 164 ~e~L~~~L~~~~~~~~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~--~-~d~Ivft 235 (286)
...++..+ +.. +-+++.++..+.. ...+.+.|++.|++|.....|... +.+....++.+. . .++|++.
T Consensus 120 ~~~~~~~~-~~~-~w~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~--~~d~~~~L~~lk~~~~~~viv~~ 195 (382)
T cd06371 120 SRVLFTVL-RYF-RWAHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTSMGPD--EKGAREALKKVRSADRVRVVIMC 195 (382)
T ss_pred HHHHHHHH-HHC-CCeEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEEEecCC--HHHHHHHHHHHhcCCCcEEEEEE
Confidence 45565444 333 2256666644333 567889999999887665544422 222223444442 3 6787765
Q ss_pred Ch------HHHHHHHHHhcccc
Q 023179 236 SP------SAVRSWVNLISDTE 251 (286)
Q Consensus 236 S~------sav~~~~~~~~~~~ 251 (286)
.. ..+..++..+.+.+
T Consensus 196 ~~~~~~~~~~~~~i~~qa~~~G 217 (382)
T cd06371 196 MHSVLIGGEEQRLLLETALEMG 217 (382)
T ss_pred eeccccCcHHHHHHHHHHHHcC
Confidence 43 45567777777654
No 316
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=49.67 E-value=2.6e+02 Score=27.26 Aligned_cols=144 Identities=14% Similarity=0.095 Sum_probs=72.7
Q ss_pred CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CCCCcEEEEEC-hh
Q 023179 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AG 137 (286)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~-~~~~~~i~aVG-~~ 137 (286)
.+-.++.+.|++.|+++.... ......+++. .......-+..++.....+.+.+++. +.+-....-+| +.
T Consensus 204 gd~~elk~lL~~~Gl~v~~~~----~~~~s~eei~----~~~~A~lniv~~~~~~~~~A~~L~erfGiP~~~~~p~G~~~ 275 (475)
T PRK14478 204 GELWQVKPLLDRLGIRVVACI----TGDARYDDVA----SAHRARANMMVCSGAMINLARKMEERYGIPFFEGSFYGIED 275 (475)
T ss_pred CCHHHHHHHHHHcCCeEEEEc----CCCCCHHHHH----hcccCcEEEEEcHHHHHHHHHHHHHHhCCCEEecCCCcHHH
Confidence 345789999999999998422 1111223332 44555543434444444456666553 33322211144 35
Q ss_pred hHHHHHHhhhcc-CCCCceec---cCC--CCCHHHHHHhcccCC--CCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEe
Q 023179 138 TASIFEEVIQSS-KCSLDVAF---SPS--KATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 138 Ta~~L~~~~~~~-~~G~~~~~---~~~--~~~~e~L~~~L~~~~--~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~v 209 (286)
|.+.|++..+.- ..++.... +++ ....+.+.+.|.... ..|+|+.+..+....-.|...|.+.|++|..+.+
T Consensus 276 T~~~l~~la~~~~~~~~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~Gk~vaI~~~~~~~~~la~~l~ElGm~v~~~~~ 355 (475)
T PRK14478 276 TSDSLRQIARLLVERGADAELVERTEALIAEEEAKAWAALEPYRPRLEGKRVLLYTGGVKSWSVVKALQELGMEVVGTSV 355 (475)
T ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEEE
Confidence 677777763110 00010000 000 000111222232221 2678998876664444688899999999987766
Q ss_pred ee
Q 023179 210 YT 211 (286)
Q Consensus 210 Y~ 211 (286)
+.
T Consensus 356 ~~ 357 (475)
T PRK14478 356 KK 357 (475)
T ss_pred EC
Confidence 54
No 317
>PRK05568 flavodoxin; Provisional
Probab=49.61 E-value=45 Score=26.18 Aligned_cols=73 Identities=11% Similarity=0.186 Sum_probs=40.2
Q ss_pred eEEEeCCCCchHHHHHHH----HhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---------HHHHHH
Q 023179 52 KVVVTRERGKNGKLIKAL----AKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---------AGSVFL 118 (286)
Q Consensus 52 ~VLitR~~~~~~~l~~~L----~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~---------av~~~~ 118 (286)
.|++....+....+++.+ ++.|.++..+++-+. . . ..+.++|.|+|-||. .+..|+
T Consensus 5 ~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~------~-~----~~~~~~d~iilgsp~y~~~~~~~~~~~~f~ 73 (142)
T PRK05568 5 NIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEA------S-V----DDVKGADVVALGSPAMGDEVLEEGEMEPFV 73 (142)
T ss_pred EEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCC------C-H----HHHHhCCEEEEECCccCcccccchhHHHHH
Confidence 344445555555555554 445666554433211 1 0 134679999999984 355666
Q ss_pred HHHHHcCCCCcEEEEECh
Q 023179 119 EAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~ 136 (286)
+.+... ..+.+++++|.
T Consensus 74 ~~~~~~-~~~k~~~~f~t 90 (142)
T PRK05568 74 ESISSL-VKGKKLVLFGS 90 (142)
T ss_pred HHhhhh-hCCCEEEEEEc
Confidence 655332 34666777665
No 318
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=49.33 E-value=68 Score=28.67 Aligned_cols=77 Identities=17% Similarity=0.224 Sum_probs=37.7
Q ss_pred HHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeChHHHHHH
Q 023179 166 ILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSW 243 (286)
Q Consensus 166 ~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS~sav~~~ 243 (286)
.|+++|.+ .|.++.|+.-.... .+.+.+++.|++|..++--.. .+.+..++.+.+ .++|+|++.+...-..+
T Consensus 22 ~LA~~l~~---~g~~v~f~~~~~~~-~~~~~i~~~g~~v~~~~~~~~--~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~ 95 (279)
T TIGR03590 22 TLARALHA---QGAEVAFACKPLPG-DLIDLLLSAGFPVYELPDESS--RYDDALELINLLEEEKFDILIVDHYGLDADW 95 (279)
T ss_pred HHHHHHHH---CCCEEEEEeCCCCH-HHHHHHHHcCCeEEEecCCCc--hhhhHHHHHHHHHhcCCCEEEEcCCCCCHHH
Confidence 45555533 34566666554333 456677777776654432110 001111222222 25678887776544445
Q ss_pred HHHhc
Q 023179 244 VNLIS 248 (286)
Q Consensus 244 ~~~~~ 248 (286)
...++
T Consensus 96 ~~~~k 100 (279)
T TIGR03590 96 EKLIK 100 (279)
T ss_pred HHHHH
Confidence 55444
No 319
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=48.85 E-value=93 Score=23.01 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=29.9
Q ss_pred CEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeC
Q 023179 179 CTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (286)
Q Consensus 179 ~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS 236 (286)
+|+|+.||.+- ...+.+.|+++|+++. +... .... +......+|+|+.|.
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~---v~~~-~~~e----~~~~~~~~D~iv~t~ 58 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVE---LIQC-RVNE----IETYMDGVHLICTTA 58 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHCCCeEE---EEEe-cHHH----HhhhcCCCCEEEECC
Confidence 47999999886 3456688888998643 3331 1111 111235789875554
No 320
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=48.75 E-value=1.6e+02 Score=25.50 Aligned_cols=73 Identities=15% Similarity=0.030 Sum_probs=46.5
Q ss_pred CCCCCeEEEeCC---CCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEE----EEeCHHHHHHHHH
Q 023179 47 SNSNPKVVVTRE---RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWI----IITSPEAGSVFLE 119 (286)
Q Consensus 47 ~l~g~~VLitR~---~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~I----vFTS~~av~~~~~ 119 (286)
.+.|+.+|||-. .+-...+++.|.+.|++++..- +... +.+.+++..+.+...... =++++.+++.+++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~--r~~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 79 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTY--AGER--LEKEVRELADTLEGQESLLLPCDVTSDEEITACFE 79 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEec--Cccc--chHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHH
Confidence 467899999986 4668899999999999987542 2111 112333333222211111 1688999999988
Q ss_pred HHHH
Q 023179 120 AWKE 123 (286)
Q Consensus 120 ~l~~ 123 (286)
.+.+
T Consensus 80 ~~~~ 83 (257)
T PRK08594 80 TIKE 83 (257)
T ss_pred HHHH
Confidence 7765
No 321
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=48.56 E-value=91 Score=27.76 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHhcccCCCCCCEEEEEcCCC--ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHH
Q 023179 165 KILASELPKNGKKKCTVLYPASAK--ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRS 242 (286)
Q Consensus 165 e~L~~~L~~~~~~~~rvL~~~g~~--~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~ 242 (286)
++..+.|......|.++.++.++. .+..+.+.|+..|+ +...++ ++||..++..
T Consensus 21 ~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~-------------~~~~~~-----------i~ts~~~~~~ 76 (279)
T TIGR01452 21 PGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGF-------------NGLAEQ-----------LFSSALCAAR 76 (279)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCC-------------CCChhh-----------EecHHHHHHH
Q ss_pred HHHHhccccCCCceEEEeCHH-HHHHHHHcCCCeEEeCCCCC
Q 023179 243 WVNLISDTEQWSNSVACIGET-TASAAKRLGLKNVYYPTHPG 283 (286)
Q Consensus 243 ~~~~~~~~~~~~~~iv~IG~~-Ta~~l~~~G~~~v~~~~~ps 283 (286)
++.... ....+++.+|+. ..+.++++|+..+-.+++.+
T Consensus 77 ~l~~~~---~~~~~v~~iG~~~~~~~l~~~g~~~~~~~~~~~ 115 (279)
T TIGR01452 77 LLRQPP---DAPKAVYVIGEEGLRAELDAAGIRLAGDPSAGD 115 (279)
T ss_pred HHHhhC---cCCCEEEEEcCHHHHHHHHHCCCEEecCccccc
No 322
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=48.47 E-value=1e+02 Score=23.24 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=33.8
Q ss_pred eEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH
Q 023179 52 KVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (286)
Q Consensus 52 ~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~ 123 (286)
+||+....+. ..++.+.++++|+++. +...+ ..++.. ...++| +|+++|+ +++.++.+++
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~------i~a~~-~~e~~~---~~~~~D-vill~PQ-v~~~~~~i~~ 66 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLE------AAAGA-YGSHYD---MIPDYD-LVILAPQ-MASYYDELKK 66 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEE------EEEee-HHHHHH---hccCCC-EEEEcCh-HHHHHHHHHH
Confidence 4666665543 3677788889999855 22221 122333 246788 5566665 4444555543
No 323
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=48.37 E-value=1.4e+02 Score=27.16 Aligned_cols=188 Identities=10% Similarity=0.087 Sum_probs=89.5
Q ss_pred CCeEEEeCCCCch-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHH
Q 023179 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFL 118 (286)
Q Consensus 50 g~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~--av~~~~ 118 (286)
+++|.+.-+.-.+ .-+.+.++++|+++..+.... +.+...+.++. -..+|.||++... .....+
T Consensus 25 ~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g~~l~i~~~~~-----~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~l 99 (330)
T PRK10355 25 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANG-----NEETQMSQIENMINRGVDVLVIIPYNGQVLSNVI 99 (330)
T ss_pred CceEEEEecCCCchHHHHHHHHHHHHHHHcCCEEEEECCCC-----CHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHH
Confidence 4555554444333 334455667898888654321 11222222222 2589999998743 223334
Q ss_pred HHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEE-EEcCCCC-------
Q 023179 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVL-YPASAKA------- 189 (286)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL-~~~g~~~------- 189 (286)
+.+.+ .+++++.++.... .. ++...+..+ ...+..+++.|.+.. +++++ +..+...
T Consensus 100 ~~~~~---~~iPvV~id~~~~----~~------~~~~~V~~D~~~~g~~a~~~L~~~g--~~~i~~i~~g~~~~~~~~~R 164 (330)
T PRK10355 100 KEAKQ---EGIKVLAYDRMIN----NA------DIDFYISFDNEKVGELQAKALVDKV--PQGNYFLMGGSPVDNNAKLF 164 (330)
T ss_pred HHHHH---CCCeEEEECCCCC----CC------CccEEEecCHHHHHHHHHHHHHHhc--CCCCEEEEeCCCCCccHHHH
Confidence 44433 3688999987421 11 211111222 233555666666543 24544 3444321
Q ss_pred hhHHHHHHHhC---C-CeeEEEEeeeeecCCCCcH---HHHHH-c----CCCCEEEEeChHHHHHHHHHhccccC-CCce
Q 023179 190 SNEIEEGLSNR---G-FEVVRLNTYTTEPVHHVDQ---TVLKQ-A----LSIPVVAVASPSAVRSWVNLISDTEQ-WSNS 256 (286)
Q Consensus 190 ~~~L~~~L~~~---G-~~V~~~~vY~~~~~~~~~~---~~~~~-~----~~~d~IvftS~sav~~~~~~~~~~~~-~~~~ 256 (286)
...+.+.++++ | +.+.. +.+. . +.... ...+. + ..+++|++.+-..+-..++.+.+.+. .++.
T Consensus 165 ~~gf~~~l~~~~~~~~i~~~~-~~~~-~--~~~~~~~~~~~~~lL~~~~~~~~aI~~~nD~~A~g~l~al~~~g~~~di~ 240 (330)
T PRK10355 165 RAGQMKVLKPYIDSGKIKVVG-DQWV-D--GWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVA 240 (330)
T ss_pred HHHHHHHHhhhccCCCeEEec-ccCC-C--CCCHHHHHHHHHHHHHhCCCCccEEEECCCchHHHHHHHHHHCCCCCCce
Confidence 22233445442 3 22210 1110 0 11111 11111 1 24799999988888777777765432 2455
Q ss_pred EEEeC
Q 023179 257 VACIG 261 (286)
Q Consensus 257 iv~IG 261 (286)
++..+
T Consensus 241 IiGfD 245 (330)
T PRK10355 241 ISGQD 245 (330)
T ss_pred EEccC
Confidence 55554
No 324
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=48.24 E-value=92 Score=29.61 Aligned_cols=108 Identities=18% Similarity=0.223 Sum_probs=66.8
Q ss_pred CHHHHHHhcccCCC--CCCEEEEEcC-C-----CChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEE
Q 023179 163 TGKILASELPKNGK--KKCTVLYPAS-A-----KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAV 234 (286)
Q Consensus 163 ~~e~L~~~L~~~~~--~~~rvL~~~g-~-----~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~Ivf 234 (286)
+...+++.-.+|.. ..++|.++-. . .-...+.++|.+.|..|..+.+-.. ...++.+.+.+.+++++
T Consensus 229 ~~~~i~~~Y~~W~~~~~~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~-----~~~eI~~~i~~a~~~vv 303 (388)
T COG0426 229 NPKEIVEAYRDWAEGQPKGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDA-----DPSEIVEEILDAKGLVV 303 (388)
T ss_pred CHHHHHHHHHHHHccCCcceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccC-----CHHHHHHHHhhcceEEE
Confidence 34455555544432 1125555432 1 1245677899999998876666444 33455666679999999
Q ss_pred eChH-------HHHHHHHHhccccCCCceEEEeC---------HHHHHHHHHcCCCe
Q 023179 235 ASPS-------AVRSWVNLISDTEQWSNSVACIG---------ETTASAAKRLGLKN 275 (286)
Q Consensus 235 tS~s-------av~~~~~~~~~~~~~~~~iv~IG---------~~Ta~~l~~~G~~~ 275 (286)
.||. .+..++..+......+..+.++| ....+.++++|++.
T Consensus 304 GsPT~~~~~~p~i~~~l~~v~~~~~~~k~~~vfgS~GW~g~av~~i~~~l~~~g~~~ 360 (388)
T COG0426 304 GSPTINGGAHPPIQTALGYVLALAPKNKLAGVFGSYGWSGEAVDLIEEKLKDLGFEF 360 (388)
T ss_pred ecCcccCCCCchHHHHHHHHHhccCcCceEEEEeccCCCCcchHHHHHHHHhcCcEE
Confidence 9997 36666665554433344555555 57788888888874
No 325
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=48.18 E-value=1.2e+02 Score=23.14 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=50.0
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH----HHHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~----~av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
...|...|++.|.+++... +.++....++....+++||++-- .....+++.+...+ .++|+|.++..
T Consensus 6 ~~~l~~~L~~~~~~vv~~~--------~~dd~~~~i~~~~~i~avvi~~d~~~~~~~~~ll~~i~~~~-~~iPVFl~~~~ 76 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDAD--------STDDALAIIESFTDIAAVVISWDGEEEDEAQELLDKIRERN-FGIPVFLLAER 76 (115)
T ss_dssp HHHHHHHHHHTTTEEEEES--------SHHHHHHHHHCTTTEEEEEEECHHHHHHHHHHHHHHHHHHS-TT-EEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEeC--------ChHHHHHHHHhCCCeeEEEEEcccccchhHHHHHHHHHHhC-CCCCEEEEecC
Confidence 3578889988998887432 33556677777889999999987 66666777776654 48999999885
Q ss_pred h
Q 023179 138 T 138 (286)
Q Consensus 138 T 138 (286)
+
T Consensus 77 ~ 77 (115)
T PF03709_consen 77 D 77 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 326
>PLN02253 xanthoxin dehydrogenase
Probab=47.76 E-value=1.1e+02 Score=26.80 Aligned_cols=74 Identities=11% Similarity=0.059 Sum_probs=42.4
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEE--EEeCHHHHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWI--IITSPEAGSVFLEAWKE 123 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~I--vFTS~~av~~~~~~l~~ 123 (286)
.+.|++||||-... -+..+++.|.++|++++.+-. .. ...+++.+.+..-..+.++ =+++...++.+++.+.+
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 90 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDL---QD-DLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVD 90 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeC---CH-HHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 45689999998765 367899999999998765421 10 0111222222110112222 25778888877776654
Q ss_pred c
Q 023179 124 A 124 (286)
Q Consensus 124 ~ 124 (286)
.
T Consensus 91 ~ 91 (280)
T PLN02253 91 K 91 (280)
T ss_pred H
Confidence 3
No 327
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=47.52 E-value=1.5e+02 Score=26.82 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=59.0
Q ss_pred CCEEEEEcCCCChhHHHHHHHhCCCeeEEEEe----eeeecCCCCcHHHHHHcCCCCEEEEeChHH--------------
Q 023179 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNT----YTTEPVHHVDQTVLKQALSIPVVAVASPSA-------------- 239 (286)
Q Consensus 178 ~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~v----Y~~~~~~~~~~~~~~~~~~~d~IvftS~sa-------------- 239 (286)
++++.++.|+..--.+.+.|.+.|++|...-. |...-.... ....+.+...|+|++.-|-.
T Consensus 2 ~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~-~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~ 80 (296)
T PRK08306 2 GKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKS-SSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK 80 (296)
T ss_pred CcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceee-ccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence 57899999999999999999999999865221 111000000 00011246899999884431
Q ss_pred ---HHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeE
Q 023179 240 ---VRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 276 (286)
Q Consensus 240 ---v~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v 276 (286)
-+.+++.+++.. -+-+=++.+...+.+++.|++.+
T Consensus 81 ~~~~~~~l~~l~~~~--~v~~G~~~~~~~~~~~~~gi~~~ 118 (296)
T PRK08306 81 LVLTEELLELTPEHC--TIFSGIANPYLKELAKETNRKLV 118 (296)
T ss_pred CcchHHHHHhcCCCC--EEEEecCCHHHHHHHHHCCCeEE
Confidence 134566665421 11223445788888899999875
No 328
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=47.48 E-value=71 Score=25.06 Aligned_cols=83 Identities=10% Similarity=0.153 Sum_probs=52.5
Q ss_pred CEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHH---HHHcCCCCEEEEeChHHHHHHHHHhc
Q 023179 179 CTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTV---LKQALSIPVVAVASPSAVRSWVNLIS 248 (286)
Q Consensus 179 ~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~---~~~~~~~d~IvftS~sav~~~~~~~~ 248 (286)
+++.++.+... ...+.+.+++.|..+....+............. ++.. .+|+|++.+...+-.++..+.
T Consensus 10 r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~pdaii~~~~~~a~~~~~~l~ 88 (160)
T PF13377_consen 10 RRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRL-RPDAIICSNDRLALGVLRALR 88 (160)
T ss_dssp SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTC-SSSEEEESSHHHHHHHHHHHH
T ss_pred CeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcC-CCcEEEEcCHHHHHHHHHHHH
Confidence 67888875443 223667888999886655444332221111111 1112 679999999999999998888
Q ss_pred cccC---CCceEEEeCH
Q 023179 249 DTEQ---WSNSVACIGE 262 (286)
Q Consensus 249 ~~~~---~~~~iv~IG~ 262 (286)
+.+. .++.+++++.
T Consensus 89 ~~g~~vP~di~vv~~~~ 105 (160)
T PF13377_consen 89 ELGIRVPQDISVVSFDD 105 (160)
T ss_dssp HTTSCTTTTSEEEEESS
T ss_pred HcCCcccccccEEEecC
Confidence 7642 3677888874
No 329
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=47.31 E-value=44 Score=31.16 Aligned_cols=62 Identities=13% Similarity=0.105 Sum_probs=41.5
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHH-HHHHhcCCCccEEEEe
Q 023179 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRL-SSVLNADTIFDWIIIT 109 (286)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l-~~~l~~~~~~d~IvFT 109 (286)
.+.+++||+.-..+-+...++.|.++|+.-+.+--.+....+ .+.+ .+.+.-...+|+||+.
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~-~~~~~~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP-YRTVVREELSFQDPYDVIFFG 233 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc-hhhhhhhhhhcccCCCEEEEc
Confidence 577999999999888999999999999765444333332211 2222 1233335789999984
No 330
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=47.29 E-value=32 Score=25.00 Aligned_cols=38 Identities=21% Similarity=0.449 Sum_probs=27.3
Q ss_pred CChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChH
Q 023179 188 KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 188 ~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~s 238 (286)
.+-.++.+.|++.|++|..+.-+. .+..+|++++|--.
T Consensus 8 ~~Ls~v~~~L~~~GyeVv~l~~~~-------------~~~~~daiVvtG~~ 45 (80)
T PF03698_consen 8 EGLSNVKEALREKGYEVVDLENEQ-------------DLQNVDAIVVTGQD 45 (80)
T ss_pred CCchHHHHHHHHCCCEEEecCCcc-------------ccCCcCEEEEECCC
Confidence 455679999999998776655211 14689999998644
No 331
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family. Members of this family are substrate-binding periplasmic proteins of ABC transporters. This subfamily includes SsuA, a member of a transporter operon needed to obtain sulfur from aliphatic sulfonates. Related proteins outside the scope of this model include taurine (NH2-CH2-CH2-S03H) binding proteins, the probable sulfate ester binding protein AtsR, and the probable aromatic sulfonate binding protein AsfC. All these families make sulfur available when Cys and sulfate levels are low. Please note that phylogenetic analysis by neighbor-joining suggests that a number of sequences belonging to this family have been excluded because of scoring lower than taurine-binding proteins.
Probab=46.60 E-value=68 Score=27.84 Aligned_cols=67 Identities=15% Similarity=0.106 Sum_probs=42.9
Q ss_pred cCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHH
Q 023179 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (286)
Q Consensus 44 ~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~ 115 (286)
+...|.|++|.++++......+.+.|++.|+....+- ..... ...+...+ ..+..|+++...+....
T Consensus 95 s~~dL~Gk~i~~~~~~~~~~~~~~~l~~~G~~~~~v~---~~~~~-~~~~~~al-~~g~vda~~~~~p~~~~ 161 (288)
T TIGR01728 95 TVADLKGKRIAVPKGGSGHDLLLRALLKAGLSGDDVT---ILYLG-PSDARAAF-AAGQVDAWAIWEPWGSA 161 (288)
T ss_pred CHHHcCCCEEEecCCccHHHHHHHHHHHcCCCcccee---EEecC-cHHHHHHH-HCCCCCEEEeccchHhH
Confidence 3457889999998876666667778888888653322 22222 23344555 45778988887766544
No 332
>PRK05569 flavodoxin; Provisional
Probab=46.49 E-value=1e+02 Score=24.09 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=16.6
Q ss_pred cCCCCEEEEeChH---------HHHHHHHHhcc
Q 023179 226 ALSIPVVAVASPS---------AVRSWVNLISD 249 (286)
Q Consensus 226 ~~~~d~IvftS~s---------av~~~~~~~~~ 249 (286)
+...|.|+|-||. .++.|++.+..
T Consensus 46 ~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~ 78 (141)
T PRK05569 46 VLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKL 78 (141)
T ss_pred HhhCCEEEEECCCcCCCcCChHHHHHHHHHhhc
Confidence 4578889988874 35667766643
No 333
>PLN02891 IMP cyclohydrolase
Probab=46.43 E-value=2.5e+02 Score=27.95 Aligned_cols=134 Identities=17% Similarity=0.170 Sum_probs=76.8
Q ss_pred ccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCC-CHHHHHHhcccCCC-CCCE
Q 023179 103 FDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGK-KKCT 180 (286)
Q Consensus 103 ~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~-~~e~L~~~L~~~~~-~~~r 180 (286)
.-.|-.+-..++.-|.+.|.+. +..|++-| +|++.|++. |+.+.-+.+-- -.|-|--..+.... -..-
T Consensus 24 rALISVsDKtgi~~fAk~L~~~---gveIiSTg-GTak~L~e~------Gi~v~~Vsd~TgfPEiL~GRVKTLHPkIhgG 93 (547)
T PLN02891 24 QALISLSDKTDLALLANGLQEL---GYTIVSTG-GTASALEAA------GVSVTKVEELTNFPEMLDGRVKTLHPAVHGG 93 (547)
T ss_pred EEEEEEecccCHHHHHHHHHHC---CCEEEEcc-hHHHHHHHc------CCceeeHHhccCCchhhCCcccccCchhhhh
Confidence 3456677788999999988875 67888887 799999999 99986664311 11111000000000 0012
Q ss_pred EEEEcCCCChhHHHHHHHhCCCe---eEEEEeeeeec---C-CCCcHHHHH-----------Hc-C-CCCEEEEeChHHH
Q 023179 181 VLYPASAKASNEIEEGLSNRGFE---VVRLNTYTTEP---V-HHVDQTVLK-----------QA-L-SIPVVAVASPSAV 240 (286)
Q Consensus 181 vL~~~g~~~~~~L~~~L~~~G~~---V~~~~vY~~~~---~-~~~~~~~~~-----------~~-~-~~d~IvftS~sav 240 (286)
+|.-|.+. .=.+.|+++|+. +..+..|-=.. . ....+++++ .. . --+++++++|+-.
T Consensus 94 ILa~r~~~---~h~~~l~~~~I~~IDlVvVNLYPF~~tv~~~~~~~ee~IEnIDIGGpsmlRAAAKN~~~V~Vv~dP~DY 170 (547)
T PLN02891 94 ILARRDQE---HHMEALNEHGIGTIDVVVVNLYPFYDTVTSGGISFEDGVENIDIGGPAMIRAAAKNHKDVLVVVDPADY 170 (547)
T ss_pred hhcCCCCH---HHHHHHHHcCCCceeeEEEeccChHHHHhcCCCCHHHHHHhccCCcHHHHHHHHhCCCCeEEECCHHHH
Confidence 33333222 224567788874 44455563111 1 111122332 21 2 3689999999999
Q ss_pred HHHHHHhcc
Q 023179 241 RSWVNLISD 249 (286)
Q Consensus 241 ~~~~~~~~~ 249 (286)
+.+++.+..
T Consensus 171 ~~vl~el~~ 179 (547)
T PLN02891 171 PALLEYLKG 179 (547)
T ss_pred HHHHHHHHc
Confidence 999988764
No 334
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=46.41 E-value=1.4e+02 Score=25.52 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=49.2
Q ss_pred CHHHHHHhcccCCCCCCEEEEEcCCCC-----hhHHHHHHHhC-CCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeC
Q 023179 163 TGKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (286)
Q Consensus 163 ~~e~L~~~L~~~~~~~~rvL~~~g~~~-----~~~L~~~L~~~-G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS 236 (286)
+.+.|.+.+.+....+.+++|+..+.. -..+.+.+++. |+++..+.+.. . +...+.+...|+|+++-
T Consensus 16 ~~~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~----~---~~~~~~l~~ad~I~l~G 88 (212)
T cd03146 16 ALPAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFD----T---EDPLDALLEADVIYVGG 88 (212)
T ss_pred chHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccC----c---ccHHHHHhcCCEEEECC
Confidence 344454444443334578888866654 22366788888 99888777755 1 12233457999999999
Q ss_pred hHHHHHHHHHhccc
Q 023179 237 PSAVRSWVNLISDT 250 (286)
Q Consensus 237 ~sav~~~~~~~~~~ 250 (286)
.+. ..++..+++.
T Consensus 89 G~~-~~~~~~l~~~ 101 (212)
T cd03146 89 GNT-FNLLAQWREH 101 (212)
T ss_pred chH-HHHHHHHHHc
Confidence 644 4455555543
No 335
>PLN02409 serine--glyoxylate aminotransaminase
Probab=46.18 E-value=60 Score=30.56 Aligned_cols=62 Identities=23% Similarity=0.141 Sum_probs=43.1
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeCH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSP 111 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~--~~~d~IvFTS~ 111 (286)
.|.+||++.+..-...+...++..|+++..+|.-.- ...+.+.+++.+... .....|++++.
T Consensus 83 ~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~-~~~~~~~l~~~l~~~~~~~~k~v~~~~~ 146 (401)
T PLN02409 83 PGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWG-QGADLDILKSKLRQDTNHKIKAVCVVHN 146 (401)
T ss_pred CCCEEEEeCCCchhHHHHHHHHHcCCceEEEECCCC-CCCCHHHHHHHHhhCcCCCccEEEEEee
Confidence 478999999765556667778888999998885321 112456777777431 26788998865
No 336
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=46.17 E-value=16 Score=29.05 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=59.9
Q ss_pred EEChhhHHHHHHhhhccCCC--CceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEee
Q 023179 133 VVGAGTASIFEEVIQSSKCS--LDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (286)
Q Consensus 133 aVG~~Ta~~L~~~~~~~~~G--~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY 210 (286)
.||..|-+.++++ . +++.-.....+.+.|.+.+.++. -+.+++..+...+.|.+.+...+..+ .+|
T Consensus 9 SIG~qtLdVi~~~------~d~f~v~~Lsa~~n~~~L~~q~~~f~---p~~v~i~~~~~~~~l~~~~~~~~~~~---~v~ 76 (129)
T PF02670_consen 9 SIGTQTLDVIRKH------PDKFEVVALSAGSNIEKLAEQAREFK---PKYVVIADEEAYEELKKALPSKGPGI---EVL 76 (129)
T ss_dssp HHHHHHHHHHHHC------TTTEEEEEEEESSTHHHHHHHHHHHT----SEEEESSHHHHHHHHHHHHHTTSSS---EEE
T ss_pred HHHHHHHHHHHhC------CCceEEEEEEcCCCHHHHHHHHHHhC---CCEEEEcCHHHHHHHHHHhhhcCCCC---EEE
Confidence 4789999999998 5 66655555778899988888775 36677777777778888886555433 222
Q ss_pred eeecCCCCcHHHHHH--cCCCCEEEEeC--hHHHHHHHHHhc
Q 023179 211 TTEPVHHVDQTVLKQ--ALSIPVVAVAS--PSAVRSWVNLIS 248 (286)
Q Consensus 211 ~~~~~~~~~~~~~~~--~~~~d~IvftS--~sav~~~~~~~~ 248 (286)
.- .+.+.+. ..++|+|+... ...++..+..++
T Consensus 77 ~G------~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~ 112 (129)
T PF02670_consen 77 SG------PEGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIK 112 (129)
T ss_dssp ES------HHHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHH
T ss_pred eC------hHHHHHHhcCCCCCEEEEeCcccchHHHHHHHHH
Confidence 11 1222221 25788887754 344455555544
No 337
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=46.14 E-value=2e+02 Score=25.04 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=46.3
Q ss_pred HHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCe-eEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHH
Q 023179 166 ILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFE-VVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWV 244 (286)
Q Consensus 166 ~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~-V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~ 244 (286)
.|+.........|+.|.++..........+.|...|.. +.++.+ -+..+.++..+..+|.+++-+- .+.|.
T Consensus 58 tiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvv------g~~~e~~~~~~~~iDF~vVDc~--~~d~~ 129 (218)
T PF07279_consen 58 TIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVV------GEAPEEVMPGLKGIDFVVVDCK--REDFA 129 (218)
T ss_pred HHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEe------cCCHHHHHhhccCCCEEEEeCC--chhHH
Confidence 34434444444666777777777777888888877752 323332 2223445656778999998887 35555
Q ss_pred -HHhcc
Q 023179 245 -NLISD 249 (286)
Q Consensus 245 -~~~~~ 249 (286)
+.++.
T Consensus 130 ~~vl~~ 135 (218)
T PF07279_consen 130 ARVLRA 135 (218)
T ss_pred HHHHHH
Confidence 44443
No 338
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=46.09 E-value=1.7e+02 Score=24.04 Aligned_cols=114 Identities=14% Similarity=0.189 Sum_probs=73.7
Q ss_pred CeEEEeCCCC---chHHHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH
Q 023179 51 PKVVVTRERG---KNGKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (286)
Q Consensus 51 ~~VLitR~~~---~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~ 123 (286)
|+|.|-.... -...+.+.|++.|++|+.+-++..+...|+. .+-+.+ ..++.|.-|+....++=.++..
T Consensus 1 MkIaig~Dhag~~lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v-~~~~~d~GIliCGTGiG~~iaA--- 76 (151)
T COG0698 1 MKIAIGSDHAGYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAV-LNGEADLGILICGTGIGMSIAA--- 76 (151)
T ss_pred CcEEEEcCcccHHHHHHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHH-HcCCCCeeEEEecCChhHHHHh---
Confidence 3455544433 3568889999999999998777766433322 233333 2347888888888888766553
Q ss_pred cCCCCcEEE-EEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 124 AGTPNVRIG-VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 124 ~~~~~~~i~-aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
...++++.+ |.-+.||...+++- .-++...+.+-....|++.+.+
T Consensus 77 NKv~GiraAl~~D~~sA~~ar~hN-----naNvl~~G~riig~~lA~~ivd 122 (151)
T COG0698 77 NKVPGIRAALVSDPTSAKLAREHN-----NANVLCLGARIIGPELAEDIVD 122 (151)
T ss_pred hccCCeEEEEecCHHHHHHHHhcC-----CCcEEEechhhccHHHHHHHHH
Confidence 234677775 67788888888872 4455455666666666665544
No 339
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=46.05 E-value=2e+02 Score=24.99 Aligned_cols=73 Identities=12% Similarity=0.056 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeeeecCCC----CcHH---HHHHcCCCCEEEEeCh----
Q 023179 177 KKCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHH----VDQT---VLKQALSIPVVAVASP---- 237 (286)
Q Consensus 177 ~~~rvL~~~g~~~--------~~~L~~~L~~~G~~V~~~~vY~~~~~~~----~~~~---~~~~~~~~d~IvftS~---- 237 (286)
+.-+|+.+.|... .+.+.+.+.+.|++|+.+.+ ...+..+ ..+. +.+.....|+++|.||
T Consensus 25 ~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~idl-~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEYn~ 103 (219)
T TIGR02690 25 HIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIFDP-PGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPERHG 103 (219)
T ss_pred CCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEeCc-ccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcccc
Confidence 4458888887653 33555667767888876653 2222211 1111 2222467899999998
Q ss_pred ---HHHHHHHHHhccc
Q 023179 238 ---SAVRSWVNLISDT 250 (286)
Q Consensus 238 ---sav~~~~~~~~~~ 250 (286)
.+++++++.+...
T Consensus 104 sipg~LKNaiDwls~~ 119 (219)
T TIGR02690 104 AITGSQKDQIDWIPLS 119 (219)
T ss_pred CcCHHHHHHHHhcccC
Confidence 6889999988763
No 340
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=45.98 E-value=98 Score=24.22 Aligned_cols=75 Identities=20% Similarity=0.185 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChhh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGT 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~T 138 (286)
..+.+.++++|..+............+. ......++.. ..|+|+..+-..+..+...+.+.+. .++.+++.+..-
T Consensus 29 ~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~pdaii~~~~~~a~~~~~~l~~~g~~vP~di~vv~~~~~~ 107 (160)
T PF13377_consen 29 EGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRL-RPDAIICSNDRLALGVLRALRELGIRVPQDISVVSFDDSP 107 (160)
T ss_dssp HHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTC-SSSEEEESSHHHHHHHHHHHHHTTSCTTTTSEEEEESSSG
T ss_pred HHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcC-CCcEEEEcCHHHHHHHHHHHHHcCCcccccccEEEecCcH
Confidence 3466788889998665444433321111 1122234333 6799999999999999999999887 488999998643
No 341
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=45.96 E-value=67 Score=27.56 Aligned_cols=72 Identities=15% Similarity=0.042 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEC
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVG 135 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG 135 (286)
-+.+.|+++|+.+...-.+......+ .+.+.+.++....+|+|+.++...+..+++.+.+.+. +++.+++.+
T Consensus 138 gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~~~~~~l~~~g~~~p~~i~vig~d 214 (268)
T cd06273 138 GVRAALAEAGLELPELWQVEAPYSIADGRAALRQLLEQPPRPTAVICGNDVLALGALYEARRLGLSVPEDLSIVGFD 214 (268)
T ss_pred HHHHHHHHcCCCCCHHHeeeCCCcHHHHHHHHHHHHcCCCCCCEEEEcChHHHHHHHHHHHHcCCCCCCceEEEecC
Confidence 34566666765543222222111111 1233344433345788888887766667777777665 244455444
No 342
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=45.92 E-value=1.4e+02 Score=25.80 Aligned_cols=79 Identities=19% Similarity=0.075 Sum_probs=47.8
Q ss_pred eEEEeCCCCch--HHHHHHHH-hCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH------------HH
Q 023179 52 KVVVTRERGKN--GKLIKALA-KHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG------------SV 116 (286)
Q Consensus 52 ~VLitR~~~~~--~~l~~~L~-~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av------------~~ 116 (286)
+|.|.+-.+.+ .++.+.|+ ..|+++..++.-. . .+..+|.||+...... ..
T Consensus 2 ~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~~-------~-------~l~~~D~lvipGG~~~~d~l~~~~~~~~~~ 67 (219)
T PRK03619 2 KVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHKE-------T-------DLDGVDAVVLPGGFSYGDYLRCGAIAAFSP 67 (219)
T ss_pred EEEEEecCCcChHHHHHHHHHhcCCCeEEEEecCc-------C-------CCCCCCEEEECCCCchhhhhccchhhhchH
Confidence 55666555444 45788998 7899887665311 0 2467899998874221 11
Q ss_pred HHHHHHHcCCCCcEEEEEChhhHHHHHHh
Q 023179 117 FLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (286)
Q Consensus 117 ~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~ 145 (286)
+.+.+++....+.++++|..+. +.|-+.
T Consensus 68 ~~~~l~~~~~~g~~ilgIC~G~-qlLa~~ 95 (219)
T PRK03619 68 IMKAVKEFAEKGKPVLGICNGF-QILTEA 95 (219)
T ss_pred HHHHHHHHHHCCCEEEEECHHH-HHHHHc
Confidence 2222322222478899999887 566666
No 343
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=45.89 E-value=1.1e+02 Score=26.04 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=45.9
Q ss_pred CCeEEEeCCC-----CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH
Q 023179 50 NPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (286)
Q Consensus 50 g~~VLitR~~-----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~ 123 (286)
+.+|++.... ...+.+.+.+++.|+++..++.+.. .+.+.+.+ .+.+.|.|+|+-.+..+ +.+.|++
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~---~~~~~~~~---~l~~ad~I~~~GG~~~~-~~~~l~~ 100 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDT---ANDPDVVA---RLLEADGIFVGGGNQLR-LLSVLRE 100 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCC---CCCHHHHH---HHhhCCEEEEcCCcHHH-HHHHHHh
Confidence 5566555333 2456788899999999999887765 22233333 35778999999988876 4566655
No 344
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=45.87 E-value=2.8e+02 Score=26.55 Aligned_cols=202 Identities=12% Similarity=0.031 Sum_probs=98.0
Q ss_pred CCchHHHHHHHHhCCCcEEEeceEE------------eeeCCCchHHHHHHhcCCCccEEEEeCH--HHHHHHHHHHHHc
Q 023179 59 RGKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSP--EAGSVFLEAWKEA 124 (286)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~~~~~l~~~l~~~~~~d~IvFTS~--~av~~~~~~l~~~ 124 (286)
..+..++.+.|++.|+++..+|-+. ..+..+ ..+++ +.+..+.++-|..++ .....+.+.+++.
T Consensus 167 ~~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~g-~~~~~-i~~~~~A~lniv~~~~~~~g~~~A~~L~e~ 244 (429)
T cd03466 167 PADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSGG-TPISE-IKGMGGAKATIELGMFVDHGLSAGSYLEEE 244 (429)
T ss_pred hhHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCCC-CCHHH-HHhhccCcEEEEEccCccchHHHHHHHHHH
Confidence 3456899999999999998877432 111111 12322 224555555555553 2222234444432
Q ss_pred CCCCcEEEE----EC-hhhHHHHHHhhhccCCCCceeccCCCCC--HHHHHHhcccC--CCCCCEEEEEcCCCChhHHHH
Q 023179 125 GTPNVRIGV----VG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEE 195 (286)
Q Consensus 125 ~~~~~~i~a----VG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~~--~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~ 195 (286)
. +++++. +| +.|.+.|++..+.- |..+ ++... -+.+.+.+.+. ...|+|+.+..+....-.|..
T Consensus 245 ~--giP~~~~~~P~G~~~t~~~l~~l~~~~--g~~~---~~~i~~~~~~~~~~~~d~~~~l~gkrv~v~g~~~~~~~l~~ 317 (429)
T cd03466 245 F--GIPNYRLPLPIGLRATDEFMSLLSKLT--GKPI---PEKYTRERGRLLDAMIDAHKYNFGRKAAIYGEPDFVVAITR 317 (429)
T ss_pred H--CCCeeecCCCcChHHHHHHHHHHHHHH--CCCc---CHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCHHHHHHHHH
Confidence 1 334332 44 35666666652111 3221 21100 11122222221 126789988777666667889
Q ss_pred HHHhCCCeeEEEEeeeeecCCCCcHHHHHH-c--CCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcC
Q 023179 196 GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-A--LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLG 272 (286)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~-~--~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G 272 (286)
.|.+.|+++.-+.+ ....+. .++.++. . ...+.+++..+. ...+.+.+... ...++.-+..-...++++|
T Consensus 318 ~L~elG~~~~~v~~--~~~~~~-~~~~l~~~~~~~~~~~~v~~~~d-~~e~~~~l~~~---~~dliiG~s~~~~~a~~~~ 390 (429)
T cd03466 318 FVLENGMVPVLIAT--GSESKK-LKEKLEEDLKEYVEKCVILDGAD-FFDIESYAKEL---KIDVLIGNSYGRRIAEKLG 390 (429)
T ss_pred HHHHCCCEEEEEEe--CCCChH-HHHHHHHHHHhcCCceEEEeCCC-HHHHHHHHHhc---CCCEEEECchhHHHHHHcC
Confidence 99999998843332 111111 1222211 1 134555544332 22233333321 2445555556666667777
Q ss_pred CCeE
Q 023179 273 LKNV 276 (286)
Q Consensus 273 ~~~v 276 (286)
..-+
T Consensus 391 ip~~ 394 (429)
T cd03466 391 IPLI 394 (429)
T ss_pred CCEE
Confidence 6543
No 345
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=45.77 E-value=1.4e+02 Score=25.30 Aligned_cols=78 Identities=18% Similarity=0.124 Sum_probs=44.6
Q ss_pred CeEEEeCC-CCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHH-------HHHHHHH
Q 023179 51 PKVVVTRE-RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS-------VFLEAWK 122 (286)
Q Consensus 51 ~~VLitR~-~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~-------~~~~~l~ 122 (286)
++|+|.-- ......+.+.|+++|+++..++ +.+ .+.+||.||+..+.... .+.+.+.
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~--------~~~-------~~~~~d~iii~G~~~~~~~~~~~~~~~~~i~ 65 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITS--------DPE-------EILDADGIVLPGVGAFGAAMENLSPLRDVIL 65 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEEC--------CHH-------HHccCCEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 35555543 3455799999999999887663 111 23579999998732111 1112222
Q ss_pred HcCCCCcEEEEEChhhHHHHH
Q 023179 123 EAGTPNVRIGVVGAGTASIFE 143 (286)
Q Consensus 123 ~~~~~~~~i~aVG~~Ta~~L~ 143 (286)
+....+.++++|.-+-.-..+
T Consensus 66 ~~~~~~~PilgIC~G~q~l~~ 86 (200)
T PRK13143 66 EAARSGKPFLGICLGMQLLFE 86 (200)
T ss_pred HHHHcCCCEEEECHHHHHHhh
Confidence 211236788777766544433
No 346
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=45.73 E-value=82 Score=27.21 Aligned_cols=75 Identities=17% Similarity=0.094 Sum_probs=39.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChhh
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGT 138 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~T 138 (286)
-+.+.++++|..+.....+......+ ...+.+.++....+|+|++++-.-...+++.+.+.+. .++.+++.+...
T Consensus 146 gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~~~~a~g~~~~l~~~g~~ip~~i~ii~~d~~~ 225 (275)
T cd06295 146 GYREALAEAGLPLDPRLVAPGDFTEESGRAAMRALLERGPDFDAVFAASDLMALGALRALREAGRRVPEDVAVVGFDDIP 225 (275)
T ss_pred HHHHHHHHcCCCCChhhEEeccCCHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHhCCCCccceEEEeeCCch
Confidence 35556666665443222221111111 1234444533345788888876665566677776665 356677776554
No 347
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=45.50 E-value=63 Score=33.34 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=52.9
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEEEEeChH-----HHHHHHHHhccccCCCceEEEeC
Q 023179 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPS-----AVRSWVNLISDTEQWSNSVACIG 261 (286)
Q Consensus 189 ~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~IvftS~s-----av~~~~~~~~~~~~~~~~iv~IG 261 (286)
+.....+.|+..|++|+.-..+ ...++..+. ..+.|+|++.|.. .+..+++.+++.+..++++++-|
T Consensus 598 ra~fv~~~l~~~GfeV~~~~~~------~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~GG 671 (714)
T PRK09426 598 GAKVIATAFADLGFDVDIGPLF------QTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVGG 671 (714)
T ss_pred hHHHHHHHHHhCCeeEecCCCC------CCHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 3556778999999988322222 112233332 2589999998866 45556666665432235555544
Q ss_pred ---HHHHHHHHHcCCCeEEeCCC
Q 023179 262 ---ETTASAAKRLGLKNVYYPTH 281 (286)
Q Consensus 262 ---~~Ta~~l~~~G~~~v~~~~~ 281 (286)
+...+.+++.|+..++.+..
T Consensus 672 ~~~~~~~~~l~~aGvD~~i~~g~ 694 (714)
T PRK09426 672 VIPPQDYDFLYEAGVAAIFGPGT 694 (714)
T ss_pred CCChhhHHHHHhCCCCEEECCCC
Confidence 44456889999988776654
No 348
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=45.02 E-value=1.5e+02 Score=25.03 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=58.1
Q ss_pred HHHHHHHhCCCeeEEEEeeeeecCCCCc------------HHHHHHcCCCCEEEEeChHHHHHHHHHhccc-cCCCce--
Q 023179 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVD------------QTVLKQALSIPVVAVASPSAVRSWVNLISDT-EQWSNS-- 256 (286)
Q Consensus 192 ~L~~~L~~~G~~V~~~~vY~~~~~~~~~------------~~~~~~~~~~d~IvftS~sav~~~~~~~~~~-~~~~~~-- 256 (286)
++...|+..|+++..+-...=.-.+.+. ++-.+++..-|..+|.=.+--.++..-.+.. ..-+.+
T Consensus 53 dIt~~LRr~Gi~ts~lvLnaG~GvP~da~~~~~g~~fgl~~~E~~qI~~HklAV~h~GNvk~hIi~K~r~ilr~vdIP~I 132 (194)
T TIGR03264 53 EITYALREAGIQTSVLVLNAGSGIPPDAPRGGGGSTFGLTPEEIEQINRHKLAVIHLGNVKSHIIYKARLILKHVDIPAI 132 (194)
T ss_pred HHHHHHHHcCCccceEEEecCCCCCCcccccccccccCCCHHHHHHHhhcCEEEEEeCCHHHHHHHHHHHHHhcCCCCEE
Confidence 5677788888777766666544433221 1123334566777776665444444433221 111333
Q ss_pred EEEeCHHHHHHHHHcCCCe-EEeCCCCCCCC
Q 023179 257 VACIGETTASAAKRLGLKN-VYYPTHPGLEG 286 (286)
Q Consensus 257 iv~IG~~Ta~~l~~~G~~~-v~~~~~ps~eg 286 (286)
++|=+|..-+-+.+.|.+. .++|+++..+|
T Consensus 133 iVcq~PvdfEdfak~GvkT~~vmp~~~~T~G 163 (194)
T TIGR03264 133 IVCQAPVDFEDFAKIGVKTRAVMPLEPKTKG 163 (194)
T ss_pred EEeCCCcCHHHHHHhCcceeeccCCCCCCCc
Confidence 4688999999999999974 56888887665
No 349
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=44.98 E-value=94 Score=27.21 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=62.5
Q ss_pred EEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH-----HHHHhhhccCCCCceeccCCCCC---HHHHHHhcccCCC
Q 023179 105 WIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS-----IFEEVIQSSKCSLDVAFSPSKAT---GKILASELPKNGK 176 (286)
Q Consensus 105 ~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~-----~L~~~~~~~~~G~~~~~~~~~~~---~e~L~~~L~~~~~ 176 (286)
.+.+...+-....++.+++.|.++--+++-|+.|.- .+..+ ..+.-.++|++.- -+.+.+++.+..
T Consensus 93 Y~d~~dK~~~~~~f~klK~iW~~rdilIVEG~~sR~GvgnDLFdna-----ksI~rIicPsknAf~~~d~I~~~i~~~~- 166 (225)
T PF08759_consen 93 YIDYKDKSKSARYFEKLKQIWKDRDILIVEGEKSRSGVGNDLFDNA-----KSIKRIICPSKNAFSKYDEILEAIKKYA- 166 (225)
T ss_pred eeecccchHHHHHHHHHHHHhCCCcEEEEecCCeecCCCchhhhCc-----cceEEEECCchhhHHHHHHHHHHHHHhC-
Confidence 455666666677778888877777778899999973 34433 2556677787522 355666666553
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEE
Q 023179 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (286)
Q Consensus 177 ~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~ 206 (286)
.++=||+.=|..+. .|.-.|.+.|.++..
T Consensus 167 ~~~LiLiaLGPTAt-VLayDL~~~G~qaiD 195 (225)
T PF08759_consen 167 KDKLILIALGPTAT-VLAYDLSKLGYQAID 195 (225)
T ss_pred CCcEEEEecCCcch-hhHHHHHhcCCeeEe
Confidence 34445555666554 688999999976643
No 350
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.87 E-value=1.2e+02 Score=25.97 Aligned_cols=70 Identities=9% Similarity=-0.023 Sum_probs=42.0
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEE--EEeCHHHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWI--IITSPEAGSVFLEAWK 122 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~I--vFTS~~av~~~~~~l~ 122 (286)
..+.|+++|||-... -+..+++.|.+.|+++..+ .+. . +...+.+... ...++ =+++..+++.+++.+.
T Consensus 3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~--~~~----~-~~~~~~l~~~-~~~~~~~Dl~~~~~~~~~~~~~~ 74 (255)
T PRK06463 3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVL--YNS----A-ENEAKELREK-GVFTIKCDVGNRDQVKKSKEVVE 74 (255)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE--eCC----c-HHHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHH
Confidence 356789999997654 4678999999999987632 111 1 1111222111 22222 2467888888777665
Q ss_pred H
Q 023179 123 E 123 (286)
Q Consensus 123 ~ 123 (286)
+
T Consensus 75 ~ 75 (255)
T PRK06463 75 K 75 (255)
T ss_pred H
Confidence 4
No 351
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=44.60 E-value=52 Score=28.36 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=43.8
Q ss_pred CCCeEEEeCCC-----CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH
Q 023179 49 SNPKVVVTRER-----GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (286)
Q Consensus 49 ~g~~VLitR~~-----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~ 123 (286)
.+.+|++.... ...+.+.+.+++.|+.....+.+......+.+.+.+. +.+.|.|+|+-.+..+ +.+.|.+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~---l~~ad~I~~~GG~~~~-~~~~l~~ 103 (217)
T cd03145 28 AGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVAR---LRDADGIFFTGGDQLR-ITSALGG 103 (217)
T ss_pred CCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHH---HHhCCEEEEeCCcHHH-HHHHHcC
Confidence 35566665443 2356788888999987555544433222233444444 4678999999999877 4555654
No 352
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=44.57 E-value=1.7e+02 Score=26.19 Aligned_cols=79 Identities=13% Similarity=0.031 Sum_probs=46.5
Q ss_pred cccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHH
Q 023179 42 TSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVF 117 (286)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~-~~d~Iv--FTS~~av~~~ 117 (286)
++++..+.|+++|||-... -+..+++.|.++|+.++..-.- .....+.+.+.+...+ ...++. +++..+++.+
T Consensus 4 ~~~~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~---~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~ 80 (306)
T PRK07792 4 TTNTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVA---SALDASDVLDEIRAAGAKAVAVAGDISQRATADEL 80 (306)
T ss_pred ccCCcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC---chhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 3455678899999997754 4678999999999987643211 1111122333332211 111111 4677888888
Q ss_pred HHHHHH
Q 023179 118 LEAWKE 123 (286)
Q Consensus 118 ~~~l~~ 123 (286)
++...+
T Consensus 81 ~~~~~~ 86 (306)
T PRK07792 81 VATAVG 86 (306)
T ss_pred HHHHHH
Confidence 776654
No 353
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=44.53 E-value=52 Score=29.17 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=48.7
Q ss_pred EEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCee
Q 023179 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEV 204 (286)
Q Consensus 130 ~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V 204 (286)
.++++|...--++++. |+.+++.-. +.+..+++. .+|..||++........+.+.|.+.|.+.
T Consensus 190 ~iaAmG~~a~va~rkl------giePdi~Fg--~~~a~ieAa----~rGl~vlvv~t~~ml~~~~~~l~~~~~eY 252 (260)
T COG1497 190 IIAAMGTEALVALRKL------GIEPDIEFG--TLEAAIEAA----VRGLSVLVVITRRMLRYLLRKLEEEGLEY 252 (260)
T ss_pred hhhhhhHHHHHHHHHc------CCCCCeeec--ccHHHHHHH----hcCCcEEEEEeHHHHHHHHHHHHhcCCcc
Confidence 6899999999999999 999977522 333333333 26789999988888888899999988765
No 354
>PRK07053 glutamine amidotransferase; Provisional
Probab=44.40 E-value=1.6e+02 Score=25.77 Aligned_cols=92 Identities=9% Similarity=-0.021 Sum_probs=52.4
Q ss_pred CCeEEEeCCCC--chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-HHH---------HHH
Q 023179 50 NPKVVVTRERG--KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-EAG---------SVF 117 (286)
Q Consensus 50 g~~VLitR~~~--~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~-~av---------~~~ 117 (286)
.++|+|.+... .-..+.+.|++.|..+..+....-...+ ..+.+||.||++-. .++ ...
T Consensus 2 m~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~---------~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~ 72 (234)
T PRK07053 2 MKTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLET---------LDALEPDLLVVLGGPIGVYDDELYPFLAPE 72 (234)
T ss_pred CceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCC---------CCccCCCEEEECCCCCCCCCCCcCCcHHHH
Confidence 46788887654 4568999999999888766554322111 12457899999752 222 111
Q ss_pred HHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCcee
Q 023179 118 LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (286)
Q Consensus 118 ~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~ 156 (286)
.+.+.+.-..+.+++.|.-+-.-..+.. |-++.
T Consensus 73 ~~~i~~~~~~~~PvlGIC~G~Qlla~al------Gg~V~ 105 (234)
T PRK07053 73 IALLRQRLAAGLPTLGICLGAQLIARAL------GARVY 105 (234)
T ss_pred HHHHHHHHHCCCCEEEECccHHHHHHHc------CCcEe
Confidence 2222221123677765555554445555 76653
No 355
>PLN02306 hydroxypyruvate reductase
Probab=44.05 E-value=2.9e+02 Score=26.22 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=77.2
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcC
Q 023179 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAG 125 (286)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~~~ 125 (286)
|.-..+|+++.+-.. +...+.|++.|+++.... ......+.+++.+.+ ...+|.++..+...+ +.+++.+...
T Consensus 12 ~~~~~~v~~~~~~~~-~~~~~~L~~~~~~v~~~~--~~~~~~~~~~~~~~~--~~~~d~vi~~~~~~i~~~~l~~~~~l- 85 (386)
T PLN02306 12 PNGKYRVVSTKPMPG-TRWINLLVDQDCRVEICT--EKKTILSVEDIIALI--GDKCDGVIGQLTEDWGETLFSALSKA- 85 (386)
T ss_pred CCCCceEEEeCCCCc-HHHHHHHHhcCceEEecC--CcCCCCCHHHHHHHh--hcCCcEEEEcCCCCcCHHHHHhCCcC-
Confidence 445678999887542 224567777777775222 111112223343333 245887776543222 3344433211
Q ss_pred CCCcEE-EEEChhh----HHHHHHhhhccCCCCceeccCCCCCHHHHHHh------------------ccc-----C---
Q 023179 126 TPNVRI-GVVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE------------------LPK-----N--- 174 (286)
Q Consensus 126 ~~~~~i-~aVG~~T----a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~------------------L~~-----~--- 174 (286)
+.++ .+.|.++ .+++++. |+.+..+|. .+++.+++. +.. +
T Consensus 86 --~lk~I~~~~~G~D~iD~~aa~~~------gI~V~n~pg-~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~ 156 (386)
T PLN02306 86 --GGKAFSNMAVGYNNVDVEAANKY------GIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPH 156 (386)
T ss_pred --CceEEEECCcccccccHHHHHHC------CCEEEECCC-cCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccc
Confidence 2343 3444444 3667777 998877654 344443311 100 0
Q ss_pred -----CCCCCEEEEEcCCCChhHHHHHHH-hCCCeeEEEEee
Q 023179 175 -----GKKKCTVLYPASAKASNEIEEGLS-NRGFEVVRLNTY 210 (286)
Q Consensus 175 -----~~~~~rvL~~~g~~~~~~L~~~L~-~~G~~V~~~~vY 210 (286)
...|+++.+++-......+...|. .-|.+|..+..|
T Consensus 157 ~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~ 198 (386)
T PLN02306 157 LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY 198 (386)
T ss_pred ccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCC
Confidence 125678888865555556777774 778777544433
No 356
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.05 E-value=1.3e+02 Score=26.03 Aligned_cols=47 Identities=17% Similarity=0.132 Sum_probs=27.5
Q ss_pred HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhh
Q 023179 92 RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 92 ~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
.+.+.++....+|+|+.++-..+...++.+.+.+...+.++..+...
T Consensus 173 ~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~~~g~~di~vvgfd~~~ 219 (272)
T cd06313 173 IWETWLTKYPQLDGAFCHNDSMALAAYQIMKAAGRTKIVIGGVDGDP 219 (272)
T ss_pred HHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHcCCCceEEEeecCCH
Confidence 34444433345677777776666666677776666455555555443
No 357
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=43.82 E-value=2.8e+02 Score=26.03 Aligned_cols=138 Identities=13% Similarity=0.032 Sum_probs=71.0
Q ss_pred chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEE---EC-h
Q 023179 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGV---VG-A 136 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~a---VG-~ 136 (286)
+..++.+.|++.|+++..+.. ...+.+++ ++..+...-+..++.....+.+.|.+. -++++.. +| +
T Consensus 174 d~~el~~lL~~~Gi~~~~~~~----~~~~~~~i----~~~~~A~~niv~~~~~~~~~a~~L~~r--~GiP~~~~~p~G~~ 243 (406)
T cd01967 174 DAWVIKPLLEELGIRVNATFT----GDGTVDEL----RRAHRAKLNLVHCSRSMNYLAREMEER--YGIPYMEVNFYGFE 243 (406)
T ss_pred hHHHHHHHHHHcCCEEEEEeC----CCCCHHHH----hhCccCCEEEEEChHHHHHHHHHHHHh--hCCCEEEecCCcHH
Confidence 558999999999999984331 11222333 345666666655553334345555542 1333332 33 3
Q ss_pred hhHHHHHHhhhccCCCCceeccCCC--CCHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeee
Q 023179 137 GTASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 211 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~~~~--~~~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~ 211 (286)
.|.+.++...+.- |... -.++. .--+.+.+.+... ...|+|+.+..+......+...|.+.|++|..+.++.
T Consensus 244 ~t~~~l~~l~~~l--g~~~-~~~~~i~~~~~~~~~~l~~~~~~l~gkrv~I~~~~~~~~~~~~~l~elG~~v~~~~~~~ 319 (406)
T cd01967 244 DTSESLRKIAKFF--GDEE-KAEEVIAEEEARIKPELEKYRERLKGKKVIIYTGGARSWHVIAALRELGMEVVAAGYEF 319 (406)
T ss_pred HHHHHHHHHHHHh--CCHH-HHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEccCcchHHHHHHHHHcCCEEEEEEEec
Confidence 4556665552110 3210 00000 0011122222221 1267888877666655566789999999986555443
No 358
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=43.63 E-value=2.4e+02 Score=25.22 Aligned_cols=200 Identities=13% Similarity=0.092 Sum_probs=101.5
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC--
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-- 127 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~-- 127 (286)
.++||+.-+..++..|++.|...+.......+-.... + + ...+-..+++-.-+.+.+.+.+++.+.+
T Consensus 2 ~~~ilvlGGT~Dar~la~~L~~~~~~~~~ss~t~~g~--~-------l--~~~~~~~~~~G~l~~e~l~~~l~e~~i~ll 70 (257)
T COG2099 2 MMRILLLGGTSDARALAKKLAAAPVDIILSSLTGYGA--K-------L--AEQIGPVRVGGFLGAEGLAAFLREEGIDLL 70 (257)
T ss_pred CceEEEEeccHHHHHHHHHhhccCccEEEEEcccccc--c-------c--hhccCCeeecCcCCHHHHHHHHHHcCCCEE
Confidence 4789999999999999999988873332222211111 0 0 1112226666666666666666665442
Q ss_pred ---CcEEEE-EChhhHHHHHHhhhccCCCCceecc--C------C----CCCHHHHHHhcccCCCCCCEEEEEcCCCChh
Q 023179 128 ---NVRIGV-VGAGTASIFEEVIQSSKCSLDVAFS--P------S----KATGKILASELPKNGKKKCTVLYPASAKASN 191 (286)
Q Consensus 128 ---~~~i~a-VG~~Ta~~L~~~~~~~~~G~~~~~~--~------~----~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~ 191 (286)
.-++++ |.+...++.++. |+...-. | + -.+.++.++.+.+. ++||++..|...-.
T Consensus 71 IDATHPyAa~iS~Na~~aake~------gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~---~~rVflt~G~~~l~ 141 (257)
T COG2099 71 IDATHPYAARISQNAARAAKET------GIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQL---GRRVFLTTGRQNLA 141 (257)
T ss_pred EECCChHHHHHHHHHHHHHHHh------CCcEEEEECCccccCCCceEEecCHHHHHHHHhcc---CCcEEEecCccchH
Confidence 222322 444455666666 6643111 1 1 14566666666553 47999998776655
Q ss_pred HHHHHHHhCCCeeEEEEeeeeecC-CCCcHHHHHH-cCCCCEEEEeChHHHHHHHHHhccccCCCceEEEe---CHH---
Q 023179 192 EIEEGLSNRGFEVVRLNTYTTEPV-HHVDQTVLKQ-ALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACI---GET--- 263 (286)
Q Consensus 192 ~L~~~L~~~G~~V~~~~vY~~~~~-~~~~~~~~~~-~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~I---G~~--- 263 (286)
.+.+..... .++-++.. ......+++. ....++|.---|-+.+.=..++.+ |+..+++- |..
T Consensus 142 ~f~~~~~~~-------~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~all~q---~~id~vItK~SG~~Gg~ 211 (257)
T COG2099 142 HFVAADAHS-------HVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNKALLEQ---YRIDVVVTKNSGGAGGT 211 (257)
T ss_pred HHhcCcccc-------eEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHHHHHHH---hCCCEEEEccCCcccCc
Confidence 554443221 23333333 3322222321 234555555334443322223322 23333332 221
Q ss_pred --HHHHHHHcCCCeEEeC
Q 023179 264 --TASAAKRLGLKNVYYP 279 (286)
Q Consensus 264 --Ta~~l~~~G~~~v~~~ 279 (286)
=.++++++|+.++.+.
T Consensus 212 ~~Ki~aA~eLgi~VI~I~ 229 (257)
T COG2099 212 YEKIEAARELGIPVIMIE 229 (257)
T ss_pred HHHHHHHHHcCCcEEEEe
Confidence 2467889999976554
No 359
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=43.51 E-value=69 Score=24.14 Aligned_cols=84 Identities=17% Similarity=0.131 Sum_probs=47.5
Q ss_pred ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEEEEeC--hHHHHHHHHHhcccc--CCCceEEEeCH
Q 023179 189 ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVAS--PSAVRSWVNLISDTE--QWSNSVACIGE 262 (286)
Q Consensus 189 ~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~IvftS--~sav~~~~~~~~~~~--~~~~~iv~IG~ 262 (286)
+-..+...|++.|++|..+..... .++..+. ..++|+|.|++ ........+..+..+ ..+.++++-|+
T Consensus 16 Gl~~la~~l~~~G~~v~~~d~~~~------~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 16 GLLYLAAYLRKAGHEVDILDANVP------PEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp HHHHHHHHHHHTTBEEEEEESSB-------HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHHHHHHHHHHCCCeEEEECCCCC------HHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 345678899999998865543221 1233332 25899999986 444444444443321 23577888886
Q ss_pred H-HH---HHHHH-cCCCeEEe
Q 023179 263 T-TA---SAAKR-LGLKNVYY 278 (286)
Q Consensus 263 ~-Ta---~~l~~-~G~~~v~~ 278 (286)
. |. ..+++ .|+..++.
T Consensus 90 ~~t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 90 HATADPEEILREYPGIDYVVR 110 (121)
T ss_dssp SSGHHHHHHHHHHHTSEEEEE
T ss_pred chhcChHHHhccCcCcceecC
Confidence 5 22 22333 57665443
No 360
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=43.49 E-value=1.1e+02 Score=26.77 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHhcccCCCCCCEEEEEcC--CCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHH
Q 023179 168 ASELPKNGKKKCTVLYPAS--AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVN 245 (286)
Q Consensus 168 ~~~L~~~~~~~~rvL~~~g--~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~ 245 (286)
.+.|......|.+++++.+ ......+.+.|+..|+ +...++ ++||..++..++.
T Consensus 23 ~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~-------------~~~~~~-----------iit~~~~~~~~l~ 78 (249)
T TIGR01457 23 ETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDI-------------PATLET-----------VFTASMATADYMN 78 (249)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCC-------------CCChhh-----------EeeHHHHHHHHHH
Q ss_pred HhccccCCCceEEEeCHH-HHHHHHHcCCC
Q 023179 246 LISDTEQWSNSVACIGET-TASAAKRLGLK 274 (286)
Q Consensus 246 ~~~~~~~~~~~iv~IG~~-Ta~~l~~~G~~ 274 (286)
.... ..+++++|.. ..+.++++|+.
T Consensus 79 ~~~~----~~~v~~lg~~~l~~~l~~~g~~ 104 (249)
T TIGR01457 79 DLKL----EKTVYVIGEEGLKEAIKEAGYV 104 (249)
T ss_pred hcCC----CCEEEEEcChhHHHHHHHcCCE
No 361
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=43.34 E-value=87 Score=26.95 Aligned_cols=84 Identities=11% Similarity=0.101 Sum_probs=49.9
Q ss_pred CHHHHHHhcccCCC-CCCEEEEEcCCC-----ChhHHHHHHHhCCCe-eEEEEeeeeecCCCCcHHHHHHcCCCCEEEEe
Q 023179 163 TGKILASELPKNGK-KKCTVLYPASAK-----ASNEIEEGLSNRGFE-VVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA 235 (286)
Q Consensus 163 ~~e~L~~~L~~~~~-~~~rvL~~~g~~-----~~~~L~~~L~~~G~~-V~~~~vY~~~~~~~~~~~~~~~~~~~d~Ivft 235 (286)
....+.+.+.+... .+.+|+++.... ..+.+.+.+++.|++ +..+.+.++.. ...+++.+.+...|+|+|+
T Consensus 13 ~~~~i~~~~~~~ag~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~--a~~~~~~~~l~~ad~I~~~ 90 (217)
T cd03145 13 DNRAILQRFVARAGGAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREA--ANDPEVVARLRDADGIFFT 90 (217)
T ss_pred CHHHHHHHHHHHcCCCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHH--cCCHHHHHHHHhCCEEEEe
Confidence 34444455544332 456888875543 345577888888984 55555544331 1223445556799999999
Q ss_pred ChHHHHHHHHHhcc
Q 023179 236 SPSAVRSWVNLISD 249 (286)
Q Consensus 236 S~sav~~~~~~~~~ 249 (286)
..+..+.. +.+..
T Consensus 91 GG~~~~~~-~~l~~ 103 (217)
T cd03145 91 GGDQLRIT-SALGG 103 (217)
T ss_pred CCcHHHHH-HHHcC
Confidence 99887644 43333
No 362
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=43.33 E-value=2.6e+02 Score=26.71 Aligned_cols=192 Identities=16% Similarity=0.150 Sum_probs=101.1
Q ss_pred chHHHHHHHHhCCCcEEEeceEEe----------eeCC-CchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CCCC
Q 023179 61 KNGKLIKALAKHRIDCLELPLIQH----------AQGP-DTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPN 128 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~----------~~~~-~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~-~~~~ 128 (286)
+-.++.+.|++.|+++..+|=+.- .+.. -...+++ +++..+...-+..++.+ ..+.+.+++. +.+-
T Consensus 172 D~~eik~lL~~~Gl~v~~l~d~s~~~d~~~~~~~~~~~~ggt~lee-i~~~~~A~lniv~~~~~-~~~a~~Lee~~GiP~ 249 (417)
T cd01966 172 DVEELKDIIEAFGLEPIILPDLSGSLDGHLADDWSPTTTGGTTLED-IRQMGRSAATLAIGESM-RKAAEALEERTGVPY 249 (417)
T ss_pred HHHHHHHHHHHcCCceEEecCcccccCCCCCCCccccCCCCCcHHH-HHhhccCeEEEEECHHH-HHHHHHHHHHHCCCe
Confidence 457999999999999998875431 0000 0112323 22455566666667765 4566666543 3332
Q ss_pred cEE-EEECh-hhHHHHHHhhhccCCCCceeccCCCCC--HHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCC
Q 023179 129 VRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGF 202 (286)
Q Consensus 129 ~~i-~aVG~-~Ta~~L~~~~~~~~~G~~~~~~~~~~~--~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~L~~~G~ 202 (286)
... .-+|- .|.+.|++..+.- |..+ |+... -+.+.+.|... ...|+|+.+..+..-.-.+...|.+.|+
T Consensus 250 ~~~~~p~G~~~T~~~L~~la~~~--g~~~---~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~~~~~l~~~L~ElG~ 324 (417)
T cd01966 250 YVFPSLTGLEAVDALIATLAKLS--GRPV---PEKIRRQRAQLQDAMLDGHFYLGGKRVAIALEPDLLAALSSFLAEMGA 324 (417)
T ss_pred eecCCCcchHHHHHHHHHHHHHH--CCCc---CHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeCHHHHHHHHHHHHHCCC
Confidence 111 12554 6777777763221 4322 22110 11233444331 1267898888766556678899999999
Q ss_pred eeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCe
Q 023179 203 EVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 275 (286)
Q Consensus 203 ~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~ 275 (286)
.+..+.+.... + . .+.+ ..+.++......++. .+. ...++.-|..-...++++|..-
T Consensus 325 ~~~~~~~~~~~--~----~-~~~~-~~~~~~~~D~~~~e~---~~~-----~~dllig~s~~~~~A~~~~ip~ 381 (417)
T cd01966 325 EIVAAVATTDS--P----A-LEKL-PAEEVVVGDLEDLED---LAA-----EADLLVTNSHGRQAAERLGIPL 381 (417)
T ss_pred EEEEEEECCCC--H----H-HHhC-cccceEeCCHHHHHH---hcc-----cCCEEEEcchhHHHHHhcCCCE
Confidence 88765553221 1 1 2222 234455555555553 222 2334444555555666666543
No 363
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=43.19 E-value=2.1e+02 Score=24.57 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=29.0
Q ss_pred HHHHHhcCC-CccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChhhH
Q 023179 93 LSSVLNADT-IFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGTA 139 (286)
Q Consensus 93 l~~~l~~~~-~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~Ta 139 (286)
+.+.++... .+|.|+.++-..+....+.+.+.+. +++.+++.+....
T Consensus 175 ~~~~l~~~~~~~~aI~~~~d~~a~g~~~a~~~~g~~ip~di~iig~d~~~~ 225 (273)
T cd06309 175 MEALLKAHGDDIDAVYAHNDEMALGAIQAIKAAGKKPGKDIKIVSIDGTKD 225 (273)
T ss_pred HHHHHHhCCCCccEEEECCcHHHHHHHHHHHHcCCCCCCCeEEEecCCCHH
Confidence 334443323 5788877777776667777777665 3566777665543
No 364
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=43.15 E-value=1.4e+02 Score=25.29 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=26.1
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChh
Q 023179 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (286)
Q Consensus 93 l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~ 137 (286)
+.+.++.....|+|+..+-..+..+++.+.+.+. +++.+++.+..
T Consensus 168 ~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~p~di~vig~d~~ 215 (268)
T cd01575 168 LAELLARWPDLDAVFCSNDDLALGALFECQRRGISVPEDIAIAGFGDL 215 (268)
T ss_pred HHHHHhCCCCCCEEEECCcHHHHHHHHHHHHhCCCCCcceEEEecCCc
Confidence 3344433345677777776666666777766654 34555555544
No 365
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=43.05 E-value=1.2e+02 Score=26.62 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=12.9
Q ss_pred ccEEEEeCHHHHHHHHHHHHHcCCCCcEEEE
Q 023179 103 FDWIIITSPEAGSVFLEAWKEAGTPNVRIGV 133 (286)
Q Consensus 103 ~d~IvFTS~~av~~~~~~l~~~~~~~~~i~a 133 (286)
+|+|+.++-..+..+.+.+.+.|..++.++.
T Consensus 208 ~~ai~~~~d~~A~g~l~al~~~G~~dv~vig 238 (295)
T PRK10653 208 VQAVFAQNDEMALGALRALQTAGKSDVMVVG 238 (295)
T ss_pred cCEEEECCChhHHHHHHHHHHcCCCceEEEE
Confidence 3444444444444444444444433333333
No 366
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.03 E-value=1.7e+02 Score=24.97 Aligned_cols=43 Identities=16% Similarity=0.078 Sum_probs=22.8
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC---CcEEEEEC
Q 023179 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP---NVRIGVVG 135 (286)
Q Consensus 93 l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~---~~~i~aVG 135 (286)
+.+.++....+|+|+.+|-..+..+++.+.+.+.. .+.+++.+
T Consensus 168 ~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~di~v~g~d 213 (269)
T cd06288 168 AAALLDLDDRPTAIFCGNDRMAMGAYQALLERGLRIPQDVSVVGFD 213 (269)
T ss_pred HHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHcCCCCcccceEEeeC
Confidence 33444333346777777666655566666665542 34444444
No 367
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=43.03 E-value=3.1e+02 Score=26.23 Aligned_cols=147 Identities=18% Similarity=0.160 Sum_probs=76.7
Q ss_pred CCeEEEeCC--CCchHHHHHHHHhCCCcEE-EeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC
Q 023179 50 NPKVVVTRE--RGKNGKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT 126 (286)
Q Consensus 50 g~~VLitR~--~~~~~~l~~~L~~~G~~v~-~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~ 126 (286)
..+|.+.-. .....++.+.|++.|+++. .+|- .+..++ .....-..++..++.... ..+.+++.+.
T Consensus 166 ~~~VniiG~~~~~d~~el~~lL~~~Gi~v~~~lp~------~~~~d~----~~~~~~~~~~~~~~~~~~-~A~~L~~~Gi 234 (427)
T PRK02842 166 HPSLVLVGSLADVVEDQLTLEFKKLGIGVVGFLPA------RRFTEL----PAIGPGTVVALAQPFLSD-TARALRERGA 234 (427)
T ss_pred CCcEEEEEeCCcchHHHHHHHHHHcCCeeEEEeCC------ccHHHH----hhcCcCcEEEEeCHHHHH-HHHHHHHcCC
Confidence 345555432 2334789999999999985 4442 112222 233334455667776653 5566655443
Q ss_pred CCcEE-EEEC-hhhHHHHHHhhhccCCCCceeccCCC--CCHHHHHHhcccCC--CCCCEEEEEcCCCChhHHHHHHHh-
Q 023179 127 PNVRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSN- 199 (286)
Q Consensus 127 ~~~~i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~--~~~e~L~~~L~~~~--~~~~rvL~~~g~~~~~~L~~~L~~- 199 (286)
+-... +-+| +.|.+.|++..+.- |......-+. ..-..+.+.+.... ..|+|+.+..+....-.+...|.+
T Consensus 235 P~~~~~~P~G~~~T~~~L~~la~~~--g~~~~~~~~~~~~er~~~~~~l~~~~~~l~Gkrvai~g~~~~~~~la~~L~ee 312 (427)
T PRK02842 235 KVLTAPFPLGPEGTRAWLEAAAAAF--GIDPDGLEEREAPAWERARKALEPYRELLRGKRVFFLPDSQLEIPLARFLSRE 312 (427)
T ss_pred ccccCCCCcChHHHHHHHHHHHHHh--CcCHhHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCchhHHHHHHHHHHh
Confidence 32222 2255 46677777663111 3321100000 00112222333321 278899888766555568888987
Q ss_pred CCCeeEEEEe
Q 023179 200 RGFEVVRLNT 209 (286)
Q Consensus 200 ~G~~V~~~~v 209 (286)
.|++|..+-+
T Consensus 313 lGm~~v~v~t 322 (427)
T PRK02842 313 CGMELVEVGT 322 (427)
T ss_pred CCCEEEEeCC
Confidence 9999865554
No 368
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=42.96 E-value=47 Score=28.24 Aligned_cols=27 Identities=11% Similarity=0.375 Sum_probs=21.6
Q ss_pred HHHHHHcCCCCEEEEeCh-------HHHHHHHHH
Q 023179 220 QTVLKQALSIPVVAVASP-------SAVRSWVNL 246 (286)
Q Consensus 220 ~~~~~~~~~~d~IvftS~-------sav~~~~~~ 246 (286)
+++.+.+...|+|+|.|| +..++|++.
T Consensus 67 ~~i~~~l~~aD~iI~gsPvy~g~vsa~~K~fiDR 100 (207)
T COG0655 67 NEIYEKLLEADGIIFGSPVYFGNVSAQMKAFIDR 100 (207)
T ss_pred HHHHHHHHHCCEEEEeCCeecCCchHHHHHHHhh
Confidence 445555678999999997 678899888
No 369
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=42.91 E-value=1e+02 Score=26.25 Aligned_cols=45 Identities=18% Similarity=0.028 Sum_probs=26.4
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChh
Q 023179 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (286)
Q Consensus 93 l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~ 137 (286)
+.+.++.....|+|+.++......+.+.+.+.+. .++.+++++..
T Consensus 167 ~~~~l~~~~~~~ai~~~~~~~a~g~~~al~~~g~~~p~~v~v~g~d~~ 214 (267)
T cd06284 167 ARRLLALPDRPTAIFCFSDEMAIGAISALKELGLRVPEDISVVGFDDI 214 (267)
T ss_pred HHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCccceeEEEeCCH
Confidence 3344433345677777777666666777776664 24555555544
No 370
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=42.72 E-value=1.3e+02 Score=29.60 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=38.5
Q ss_pred CCCCCccccccccccccCCCCCCCeEEEeCCCCchHHHHHHHH-hCCCcEEEeceE
Q 023179 28 LPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALA-KHRIDCLELPLI 82 (286)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~~~~l~~~L~-~~G~~v~~~P~~ 82 (286)
-|.++.|+....|. ..+.|++|.|.-.....-.+.+.|. +.|+++...-.+
T Consensus 275 ~~~~l~~~~~~~d~----~~l~Gkrv~I~gd~~~a~~l~~~L~~ElGm~vv~~gt~ 326 (519)
T PRK02910 275 APSRLPWFSRSVDS----TYLTGKRVFVFGDATHAVAAARILSDELGFEVVGAGTY 326 (519)
T ss_pred hhhhhhHHHHhhhh----HhhcCCEEEEEcCcHHHHHHHHHHHHhcCCeEEEEecC
Confidence 45667787774432 6788999999987777788889998 799999865443
No 371
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.66 E-value=1.2e+02 Score=25.58 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=25.4
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
.+.+++||||...+ -+..+++.|.++|++++.+
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 36688999998754 4678888898999887643
No 372
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=42.36 E-value=1.6e+02 Score=25.26 Aligned_cols=44 Identities=14% Similarity=0.130 Sum_probs=26.1
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 93 l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
+.+.++...+.|.|+..+-. +..+.+.+.+.|.....++..|..
T Consensus 176 ~~~~l~~~~~~~~i~~~~d~-A~g~~~al~~~g~~~p~v~g~d~~ 219 (272)
T cd06300 176 VADFLASNPDVDGIWTQGGD-AVGAVQAFEQAGRDIPPVTGEDEN 219 (272)
T ss_pred HHHHHHhCCCcCEEEecCCC-cHHHHHHHHHcCCCCcEEEeeCCc
Confidence 33444333456777777777 666777777777644444555544
No 373
>PRK01355 azoreductase; Reviewed
Probab=42.33 E-value=56 Score=27.62 Aligned_cols=56 Identities=18% Similarity=0.308 Sum_probs=34.6
Q ss_pred HHHHHHh--CCCeeEEEEeeeeecC--------------CCCcHHHHHHcCCCCEEEEeCh-------HHHHHHHHHhc
Q 023179 193 IEEGLSN--RGFEVVRLNTYTTEPV--------------HHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLIS 248 (286)
Q Consensus 193 L~~~L~~--~G~~V~~~~vY~~~~~--------------~~~~~~~~~~~~~~d~IvftS~-------sav~~~~~~~~ 248 (286)
+.+.+++ .|.+|+.+..|..... ++...+..+.+...|.|||.|| ..+++|++.+-
T Consensus 26 ~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~sP~y~~~ipa~LK~~iDrv~ 104 (199)
T PRK01355 26 FVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDKVVISCPMTNFNVPATLKNYLDHIA 104 (199)
T ss_pred HHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCEEEEEcCccccCChHHHHHHHHHHH
Confidence 4455555 3467777777765331 1111223334578999999997 67888888753
No 374
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.33 E-value=1.2e+02 Score=26.11 Aligned_cols=33 Identities=21% Similarity=0.189 Sum_probs=26.7
Q ss_pred CCCCCeEEEeCCC---CchHHHHHHHHhCCCcEEEe
Q 023179 47 SNSNPKVVVTRER---GKNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 47 ~l~g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~ 79 (286)
++.|++||||-.. +-+..+++.|.++|++++.+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~ 37 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFT 37 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 4678999999875 36788999999999987654
No 375
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=42.28 E-value=1.5e+02 Score=25.69 Aligned_cols=80 Identities=20% Similarity=0.152 Sum_probs=48.7
Q ss_pred CeEEEeCCCCc--hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH------------HH
Q 023179 51 PKVVVTRERGK--NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG------------SV 116 (286)
Q Consensus 51 ~~VLitR~~~~--~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av------------~~ 116 (286)
|+|+|.+-.+. ...+.+.|++.|+++..++.- + . .+.++|.||+...... ..
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~------~-~-------~l~~~d~lilpGG~~~~d~~~~~~~~~~~~ 66 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYE------D-G-------SLPDYDGVVLPGGFSYGDYLRAGAIAAASP 66 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecC------C-C-------CCCCCCEEEECCCCcccccccccchhcchH
Confidence 46777766543 346889999999999877531 1 1 1456899999885321 11
Q ss_pred HHHHHHHcCCCCcEEEEEChhhHHHHHHh
Q 023179 117 FLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (286)
Q Consensus 117 ~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~ 145 (286)
+.+.+.+....+.+++.|.-+.. .|-+.
T Consensus 67 ~~~~l~~~~~~g~pvlgIC~G~Q-lLa~~ 94 (227)
T TIGR01737 67 IMQEVREFAEKGVPVLGICNGFQ-ILVEA 94 (227)
T ss_pred HHHHHHHHHHcCCEEEEECHHHH-HHHHc
Confidence 22323332224788888888774 45544
No 376
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=42.23 E-value=77 Score=24.41 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=33.2
Q ss_pred CCCeEEEeCCCCchHHHHHHHHh-CCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~-~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~ 111 (286)
.|-.|.-|... .+.|++ .|+.+..+ .+ .+......+.+.+ ..+.+|.||+|..
T Consensus 26 ~Gf~i~AT~gT------a~~L~~~~Gi~v~~v-k~--~~~~g~~~i~~~i-~~g~i~~VInt~~ 79 (115)
T cd01422 26 SRHRLVATGTT------GLLIQEATGLTVNRM-KS--GPLGGDQQIGALI-AEGEIDAVIFFRD 79 (115)
T ss_pred cCCEEEEechH------HHHHHHhhCCcEEEE-ec--CCCCchhHHHHHH-HcCceeEEEEcCC
Confidence 36677766644 356777 88887765 22 1112224456666 4589999999965
No 377
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=42.09 E-value=41 Score=31.88 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=42.2
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEe--eeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQH--AQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~--~~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
|..||++.|. =..+...+.-.|+.++.+|+... ...+|.+.+++.+. .+..+|++.||+-
T Consensus 113 GDeVlip~P~--Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~--~ktk~i~ln~P~N 174 (393)
T COG0436 113 GDEVLIPDPG--YPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAIT--PKTKAIILNSPNN 174 (393)
T ss_pred CCEEEEeCCC--CcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcC--ccceEEEEeCCCC
Confidence 6668888775 24445566668999999998543 34456677777773 3688999988863
No 378
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=41.94 E-value=82 Score=27.68 Aligned_cols=75 Identities=9% Similarity=0.124 Sum_probs=46.1
Q ss_pred HHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeCh
Q 023179 165 KILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 165 e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~ 237 (286)
+...+.+.+....++||+|+.-+.. -+...+.+++.|++|..+...+ ...+.+...|+|+++-.
T Consensus 18 ~~~~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~---------d~~~~l~~ad~I~v~GG 88 (233)
T PRK05282 18 EHALPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA---------DPVAAIENAEAIFVGGG 88 (233)
T ss_pred HHHHHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch---------hhHHHHhcCCEEEECCc
Confidence 4444444443224578888865542 2236788899999988776541 11233568999988888
Q ss_pred HHHHHHHHHhcc
Q 023179 238 SAVRSWVNLISD 249 (286)
Q Consensus 238 sav~~~~~~~~~ 249 (286)
++..- .+.++.
T Consensus 89 nt~~l-~~~l~~ 99 (233)
T PRK05282 89 NTFQL-LKQLYE 99 (233)
T ss_pred cHHHH-HHHHHH
Confidence 87763 344443
No 379
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=41.86 E-value=1.8e+02 Score=28.33 Aligned_cols=96 Identities=10% Similarity=0.070 Sum_probs=59.0
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC
Q 023179 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~ 125 (286)
.-|.|++++|.-+..+...+...|++.|++++..-. +.... +.....++.+.. +.+++..++-.+ +.+.+.+.
T Consensus 331 ~~L~GKrv~i~~g~~~~~~~~~~l~ELGmevv~~g~-~~~~~---~~~~~~~~~~~~-~~~i~~~~d~~e-l~~~i~~~- 403 (466)
T TIGR01282 331 PRLEGKTVMLYVGGLRPRHVIGAFEDLGMEVIGTGY-EFAHN---DDYERTTKYMKD-GTLIYDDVTHYE-FEEFVEKL- 403 (466)
T ss_pred HhcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEee-ecCCH---HHHHHHHHhcCC-CeEEeeCCCHHH-HHHHHHHh-
Confidence 478899999997766788888999999999973322 11111 233333433333 667766555444 33444442
Q ss_pred CCCcEEEEEChhhHHHHHHhhhccCCCCcee
Q 023179 126 TPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (286)
Q Consensus 126 ~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~ 156 (286)
+..++.-|.+-.-..++. |+..+
T Consensus 404 --~pDl~ig~~~~~~~a~k~------gIP~~ 426 (466)
T TIGR01282 404 --KPDLVGSGIKEKYVFQKM------GVPFR 426 (466)
T ss_pred --CCCEEEecCCccceeeec------CCCcc
Confidence 455776666666666666 77653
No 380
>PRK08105 flavodoxin; Provisional
Probab=41.85 E-value=1.2e+02 Score=24.33 Aligned_cols=66 Identities=17% Similarity=0.146 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-------HHHHHHHHHHHc--CCCCcEEEE
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSVFLEAWKEA--GTPNVRIGV 133 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~-------av~~~~~~l~~~--~~~~~~i~a 133 (286)
..+.+.|.+.|+++..+++.... . +.....--+|++||.. .+..|+..+.+. .+.++++++
T Consensus 20 ~~l~~~l~~~g~~~~~~~~~~~~------~----~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~~l~~~~~av 89 (149)
T PRK08105 20 EEAEAILTAQGHEVTLFEDPELS------D----WQPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDTAGYQPNLRYGV 89 (149)
T ss_pred HHHHHHHHhCCCceEEechhhCC------c----hhcccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCcccCCCEEEE
Confidence 45556677788888766653221 1 1011122456666653 245566666654 345666665
Q ss_pred EChhh
Q 023179 134 VGAGT 138 (286)
Q Consensus 134 VG~~T 138 (286)
.|-+-
T Consensus 90 fGlGd 94 (149)
T PRK08105 90 IALGD 94 (149)
T ss_pred Eeeec
Confidence 55443
No 381
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=41.81 E-value=2.6e+02 Score=25.08 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=42.4
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEE--EEeCHHHHHHHHHHHHH
Q 023179 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWI--IITSPEAGSVFLEAWKE 123 (286)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~-~~~d~I--vFTS~~av~~~~~~l~~ 123 (286)
+.+++||||-... -+..+++.|.++|.+|+.+- +.. ...+.+.+.+... ....++ =+++..+++.+++.+.+
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~--r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMAC--RNL--KKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRA 79 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEE--CCH--HHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4588999998764 36788999999998875431 110 0111222222111 122222 35888999988877654
Q ss_pred c
Q 023179 124 A 124 (286)
Q Consensus 124 ~ 124 (286)
.
T Consensus 80 ~ 80 (322)
T PRK07453 80 L 80 (322)
T ss_pred h
Confidence 3
No 382
>PRK06398 aldose dehydrogenase; Validated
Probab=41.77 E-value=1.3e+02 Score=26.01 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=27.0
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
.+.|++||||-... -+..+++.|.++|.+++.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~ 36 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINF 36 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 46799999998764 3678999999999988754
No 383
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=41.54 E-value=2.3e+02 Score=26.40 Aligned_cols=59 Identities=10% Similarity=0.118 Sum_probs=37.3
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEe-ChHHHHHHHHHhcccc
Q 023179 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA-SPSAVRSWVNLISDTE 251 (286)
Q Consensus 190 ~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~Ivft-S~sav~~~~~~~~~~~ 251 (286)
.+.|.+.+++.|++|.....|... +....++++.+ .. ++|++. ++..+..|+....+.+
T Consensus 157 ~~~l~~~~~~~gi~v~~~~~~~~~--~~d~~~~l~~ik~~~-rvii~~~~~~~~~~ll~~A~~~g 218 (387)
T cd06386 157 LEGVHHVFQEEGYHMSIYPFDETK--DLDLDEIIRAIQASE-RVVIMCAGADTIRSIMLAAHRRG 218 (387)
T ss_pred HHHHHHHHHhcCceEEEEecCCCC--cccHHHHHHHHHhcC-cEEEEecCHHHHHHHHHHHHHcC
Confidence 557788999999888665444322 22333444433 34 555554 8899999998877654
No 384
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=41.52 E-value=1.1e+02 Score=28.39 Aligned_cols=54 Identities=22% Similarity=0.192 Sum_probs=38.0
Q ss_pred CCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-hhHHHHHHHhCCCeeEEE
Q 023179 152 SLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-SNEIEEGLSNRGFEVVRL 207 (286)
Q Consensus 152 G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-~~~L~~~L~~~G~~V~~~ 207 (286)
...+...|=+.-.|.+..++.+.. .+.||+++|..+ .....+.|+..|+.|.+.
T Consensus 52 NA~Vlttpwg~ynes~~~eI~~ln--pd~VLIIGGp~AVs~~yE~~Lks~GitV~Ri 106 (337)
T COG2247 52 NAPVLTTPWGIYNESVLDEIIELN--PDLVLIIGGPIAVSPNYENALKSLGITVKRI 106 (337)
T ss_pred CCeeEecCcccccHHHHHHHHhhC--CceEEEECCCCcCChhHHHHHHhCCcEEEEe
Confidence 444554552334556667776654 479999999886 678889999999988654
No 385
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.47 E-value=1e+02 Score=26.44 Aligned_cols=75 Identities=13% Similarity=-0.024 Sum_probs=40.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~ 137 (286)
.-+.+.++++|..+............+ .+.+.+.++....+|.|+..+-..+..+.+.+.+.+. .++.+++.+..
T Consensus 137 ~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~p~~i~v~~~d~~ 216 (270)
T cd06296 137 DGYRAALAEAGIPVDPALVREGDFSTESGFRAAAELLALPERPTAIFAGNDLMALGVYEAARERGLRIPEDLSVVGFDDL 216 (270)
T ss_pred HHHHHHHHHcCCCCChHHheeCCCCHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHhCCCCCCceEEEEECCh
Confidence 344556666766543222222211111 1234444433345788888877777777787877765 35566666543
No 386
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=41.46 E-value=77 Score=27.06 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=17.2
Q ss_pred CccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEECh
Q 023179 102 IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 102 ~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~ 136 (286)
.+|+|+.++-..+...++.+.+.|.+++.++..+.
T Consensus 181 ~~~ai~~~~d~~a~~~~~~l~~~g~~di~iig~d~ 215 (268)
T cd06323 181 DIKGVFAQNDEMALGAIEALKAAGKDDVKVVGFDG 215 (268)
T ss_pred CcCEEEEcCCchHHHHHHHHHHcCCCCcEEEEeCC
Confidence 45555555555544455555555443344444443
No 387
>PLN02572 UDP-sulfoquinovose synthase
Probab=41.38 E-value=1.2e+02 Score=29.20 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=29.8
Q ss_pred cccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 42 TSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
...+..+.+++||||-..+ -+..+++.|.+.|.+|.-+
T Consensus 39 ~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~ 77 (442)
T PLN02572 39 PGSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIV 77 (442)
T ss_pred CCCCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 3445667789999998766 4678999999999888764
No 388
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=41.18 E-value=2.1e+02 Score=24.29 Aligned_cols=35 Identities=20% Similarity=0.098 Sum_probs=24.5
Q ss_pred ccEEEEeCHHHHHHHHHHHHHcCCC---CcEEEEEChh
Q 023179 103 FDWIIITSPEAGSVFLEAWKEAGTP---NVRIGVVGAG 137 (286)
Q Consensus 103 ~d~IvFTS~~av~~~~~~l~~~~~~---~~~i~aVG~~ 137 (286)
+|+|+.++...+..+++.+.+.+.. ++.+++.+..
T Consensus 178 ~~ai~~~~d~~a~~~~~~l~~~g~~vp~di~vvg~d~~ 215 (268)
T cd06298 178 PTAAFVTDDELAIGILNAAQDAGLKVPEDFEIIGFNNT 215 (268)
T ss_pred CCEEEEcCcHHHHHHHHHHHHcCCCCccceEEEeeccH
Confidence 7888888877776777777777652 5566666653
No 389
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=41.13 E-value=72 Score=29.76 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=40.0
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
.|.+|+++.|.= ..+....+..|+++..+|+-. ....+.+.+.+.+ .....+.|++++|+-
T Consensus 126 ~gd~Vlv~~P~y--~~y~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~~-~~~~~~~v~l~~P~N 186 (380)
T PLN03026 126 PGDKIIDCPPTF--GMYVFDAAVNGAEVIKVPRTP-DFSLDVPRIVEAV-ETHKPKLLFLTSPNN 186 (380)
T ss_pred CCCEEEEcCCCh--HHHHHHHHHcCCEEEEeecCC-CCCcCHHHHHHHH-hccCCcEEEEeCCCC
Confidence 467888888753 345555667899999888721 1223445666555 235678999998874
No 390
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=41.07 E-value=1.2e+02 Score=27.19 Aligned_cols=67 Identities=10% Similarity=0.197 Sum_probs=37.2
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHH---HHHHc--CCCCEEEEeChHHHHHHHHHhccccCCCceEEEeC
Q 023179 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT---VLKQA--LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIG 261 (286)
Q Consensus 190 ~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~---~~~~~--~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG 261 (286)
.+-+.+.|++.|... +-..|+....+.+.+. ..+.+ .++|.|+.....++......... +.|++..|
T Consensus 17 ~~gf~~~L~~~g~~~-~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa~~~~~~~~~----~iPVVf~~ 88 (294)
T PF04392_consen 17 VRGFKDGLKELGYDE-KNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAAQALAKHLKD----DIPVVFCG 88 (294)
T ss_dssp HHHHHHHHHHTT--C-CCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHHHHHHHH-SS-----S-EEEEC
T ss_pred HHHHHHHHHHcCCcc-ccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHhcCC----CcEEEEEe
Confidence 445788999999866 2223333333443332 23322 58999999999998888777653 15665554
No 391
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=40.99 E-value=1.2e+02 Score=27.32 Aligned_cols=87 Identities=13% Similarity=0.048 Sum_probs=50.2
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEe-
Q 023179 164 GKILASELPKNGKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA- 235 (286)
Q Consensus 164 ~e~L~~~L~~~~~~~~rvL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~Ivft- 235 (286)
...+++.+... +.+++.++..+. ..+.+.+.+++.|++|.....|............++.+ ...|+|++.
T Consensus 148 ~~a~~~~~~~~--~~~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~ 225 (348)
T cd06350 148 ALAIVALLKHF--GWTWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFG 225 (348)
T ss_pred HHHHHHHHHHC--CCeEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEe
Confidence 45566655443 335766665433 24577888999998887655554332111122233332 355777664
Q ss_pred ChHHHHHHHHHhccccC
Q 023179 236 SPSAVRSWVNLISDTEQ 252 (286)
Q Consensus 236 S~sav~~~~~~~~~~~~ 252 (286)
++..+..++..+.+.+.
T Consensus 226 ~~~~~~~~~~~a~~~g~ 242 (348)
T cd06350 226 DEDDALRLFCEAYKLGM 242 (348)
T ss_pred CcHHHHHHHHHHHHhCC
Confidence 56678888888776543
No 392
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=40.98 E-value=3.7e+02 Score=26.54 Aligned_cols=141 Identities=15% Similarity=0.102 Sum_probs=77.5
Q ss_pred CchHHHHHHHHhCCCcEE-EeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cCCCCcEEEEEC-h
Q 023179 60 GKNGKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-A 136 (286)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~-~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~-~~~~~~~i~aVG-~ 136 (286)
.+-.++.+.|+..|+++. .+|. ....++ |.++.+.+.=|..++..-..+.+.|++ .+.+-+...=+| .
T Consensus 180 ~Dl~eikrLL~~~Gi~vn~v~~~-----g~sl~d----i~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiGi~ 250 (513)
T CHL00076 180 HDCRELKRLLQDLGIEINQIIPE-----GGSVED----LKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMGIV 250 (513)
T ss_pred chHHHHHHHHHHCCCeEEEEECC-----CCCHHH----HHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCCHH
Confidence 455789999999999997 2331 112222 335566666666666555556676765 333333333455 3
Q ss_pred hhHHHHHHhhhccCCCCceeccC-CCCCHHHHHHhc--------------ccCCCCCCEEEEEcCCCChhHHHHHH-HhC
Q 023179 137 GTASIFEEVIQSSKCSLDVAFSP-SKATGKILASEL--------------PKNGKKKCTVLYPASAKASNEIEEGL-SNR 200 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~~-~~~~~e~L~~~L--------------~~~~~~~~rvL~~~g~~~~~~L~~~L-~~~ 200 (286)
.|.+.|++..+.- |....... +....+.+++.- ......|+|+++..+..-.-.+...| ++.
T Consensus 251 ~T~~fLr~la~~l--g~~~~~i~~~e~~~e~~i~~~~~~~~~~~~~~r~~d~~~l~Gkrv~I~gd~~~a~~l~~~L~~EL 328 (513)
T CHL00076 251 DTAECIRQIQKIL--NKLASDILEKKVDYEKYIDQQTRFVSQAAWFSRSIDCQNLTGKKAVVFGDATHAASMTKILAREM 328 (513)
T ss_pred HHHHHHHHHHHHh--CCCcchhhhchhhHHHHHHHhhhhhhhhhHhhhhhhccccCCCEEEEEcCchHHHHHHHHHHHhC
Confidence 6777777763221 33211100 011122222221 11123778999988776666777888 599
Q ss_pred CCeeEEEEeee
Q 023179 201 GFEVVRLNTYT 211 (286)
Q Consensus 201 G~~V~~~~vY~ 211 (286)
|+.|.-.-.|.
T Consensus 329 Gm~vv~~g~~~ 339 (513)
T CHL00076 329 GIRVSCAGTYC 339 (513)
T ss_pred CCEEEEecCcc
Confidence 99986444443
No 393
>PRK12359 flavodoxin FldB; Provisional
Probab=40.92 E-value=1.5e+02 Score=24.62 Aligned_cols=70 Identities=7% Similarity=0.041 Sum_probs=39.7
Q ss_pred eCCCCchHHHHHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH--------HHHHHHHHHHHcCC
Q 023179 56 TRERGKNGKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLEAWKEAGT 126 (286)
Q Consensus 56 tR~~~~~~~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~--------av~~~~~~l~~~~~ 126 (286)
....+....+++.+.+. |... + ++....+.. ...+..||.|||-+|. ....|+..+.+..+
T Consensus 8 ~S~TGNTe~vAe~I~~~lg~~~--v---~v~~i~~~~-----~~~l~~yD~iIlG~pTw~~Gel~~d~~~~~~~l~~~dl 77 (172)
T PRK12359 8 GSSTCYTEMAAEKIRDIIGEEL--V---DLHNLKDDP-----PKLMEQYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNL 77 (172)
T ss_pred ECCCCHHHHHHHHHHHHhCCCe--E---EEEEcccCC-----hhHHccCCEEEEEecccCCCcCcHHHHHHHHHHhhCCC
Confidence 34445566777777553 4321 1 222222211 0135679999999987 12445555666666
Q ss_pred CCcEEEEEC
Q 023179 127 PNVRIGVVG 135 (286)
Q Consensus 127 ~~~~i~aVG 135 (286)
.+.++++.|
T Consensus 78 ~gK~vAlFG 86 (172)
T PRK12359 78 EGKIVALYG 86 (172)
T ss_pred CCCEEEEEe
Confidence 788888877
No 394
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=40.82 E-value=3.2e+02 Score=26.77 Aligned_cols=73 Identities=18% Similarity=0.207 Sum_probs=43.9
Q ss_pred CeEEEeCCCCchHHHHHHHHhC--CCcEEEece-----E-Ee----------eeCCCchHHHHHHhcCCCccEEEEeCHH
Q 023179 51 PKVVVTRERGKNGKLIKALAKH--RIDCLELPL-----I-QH----------AQGPDTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~--G~~v~~~P~-----~-~~----------~~~~~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
|+|||.-.......|+..|++. |.+++.+|- . .+ ....|.+.+.+.. .....|+||...-.
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~~g~~Npg~~~~~~~~~~~~~~~~~~d~~~l~~~a-~~~~id~Vi~g~E~ 79 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKSTKGYKVYALSSYLNPGINSVVKATGGEYFIGNINSPEEVKKVA-KEVNPDLVVIGPEE 79 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCCCCCEEEEEECCCChhheeecccccCceEecCCCCHHHHHHHH-HHhCCCEEEECCch
Confidence 6899999888888999889887 888887764 1 11 1112334454544 23568888765433
Q ss_pred HH-HHHHHHHHHc
Q 023179 113 AG-SVFLEAWKEA 124 (286)
Q Consensus 113 av-~~~~~~l~~~ 124 (286)
.. ..+.+.+...
T Consensus 80 ~l~~glad~l~~~ 92 (486)
T PRK05784 80 PLFAGVADVLREE 92 (486)
T ss_pred HHHHHHHHHHHhC
Confidence 22 2333444443
No 395
>PRK09004 FMN-binding protein MioC; Provisional
Probab=40.51 E-value=75 Score=25.50 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH--------HHHHHHHHHHHc--CCCCcEEE
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLEAWKEA--GTPNVRIG 132 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~--------av~~~~~~l~~~--~~~~~~i~ 132 (286)
..+.+.|.+.|+++..+.+. + + . .+..+|.+||.++. ..+.|++.+.+. .+.+++++
T Consensus 20 ~~l~~~~~~~g~~~~~~~~~------~---~-~---~l~~~~~li~~~sT~G~Ge~p~~~~~f~~~L~~~~~~l~g~~~a 86 (146)
T PRK09004 20 DHLAEKLEEAGFSTETLHGP------L---L-D---DLSASGLWLIVTSTHGAGDLPDNLQPFFEELQEQKPDLSQVRFA 86 (146)
T ss_pred HHHHHHHHHcCCceEEeccC------C---H-H---HhccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCCCCCCCEEE
Confidence 45556666788887754321 1 1 1 23456666555432 345677766553 34566766
Q ss_pred EECh
Q 023179 133 VVGA 136 (286)
Q Consensus 133 aVG~ 136 (286)
+.|-
T Consensus 87 VfGl 90 (146)
T PRK09004 87 AIGI 90 (146)
T ss_pred EEee
Confidence 6553
No 396
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=40.39 E-value=43 Score=30.63 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=17.3
Q ss_pred eEEEe--CCCCchHHHHHHHHhCCCcEEEe
Q 023179 52 KVVVT--RERGKNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 52 ~VLit--R~~~~~~~l~~~L~~~G~~v~~~ 79 (286)
+|++| ||..++..+++.|++.|+++..+
T Consensus 147 ~V~VtESRP~~eG~~~ak~L~~~gI~~~~I 176 (301)
T COG1184 147 KVIVTESRPRGEGRIMAKELRQSGIPVTVI 176 (301)
T ss_pred EEEEEcCCCcchHHHHHHHHHHcCCceEEE
Confidence 56666 55555667777777777655543
No 397
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=40.34 E-value=62 Score=27.89 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=25.2
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC--CcEEEEEC
Q 023179 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP--NVRIGVVG 135 (286)
Q Consensus 93 l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~--~~~i~aVG 135 (286)
+.+.+.....+++|+..+-..+..+++.+.+.|.. ++.|++.+
T Consensus 174 ~~~~l~~~~~~~ai~~~~d~~a~~~~~~l~~~g~~~~di~ivg~d 218 (272)
T cd06301 174 MENWLSSGGKIDAVVANNDEMALGAIMALKAAGKSDKDVPVAGID 218 (272)
T ss_pred HHHHHHhCCCCCEEEECCCchHHHHHHHHHHcCCCCCCcEEEeeC
Confidence 44444333456777777766666667777776654 44455543
No 398
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=40.19 E-value=53 Score=26.42 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=52.1
Q ss_pred CCCCCCeEEEe-CCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc
Q 023179 46 ASNSNPKVVVT-RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (286)
Q Consensus 46 ~~l~g~~VLit-R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~ 124 (286)
-++.|++|+|. |....+..++..|.+.|+.+..+.-.. ..+++.+ ...|.||-..... ..+-..|-+
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-------~~l~~~v---~~ADIVvsAtg~~-~~i~~~~ik- 91 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-------IQLQSKV---HDADVVVVGSPKP-EKVPTEWIK- 91 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-------cCHHHHH---hhCCEEEEecCCC-CccCHHHcC-
Confidence 47889998887 666788999999999999988765211 1233443 5678888777766 433333322
Q ss_pred CCCCcEEEEEChhh
Q 023179 125 GTPNVRIGVVGAGT 138 (286)
Q Consensus 125 ~~~~~~i~aVG~~T 138 (286)
++..+.-+|..-
T Consensus 92 --pGa~Vidvg~~~ 103 (140)
T cd05212 92 --PGATVINCSPTK 103 (140)
T ss_pred --CCCEEEEcCCCc
Confidence 456666666543
No 399
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=40.17 E-value=80 Score=25.92 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=24.6
Q ss_pred hCCCcEEEeceEEeeeC--C------CchHHHHHHhcCCCccEEEEeCHH
Q 023179 71 KHRIDCLELPLIQHAQG--P------DTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 71 ~~G~~v~~~P~~~~~~~--~------~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
+.|.++..+-+....+. . ..+.+.+..+.+...|.|||.||.
T Consensus 29 ~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~ 78 (174)
T TIGR03566 29 RLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPV 78 (174)
T ss_pred hcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCc
Confidence 34777766554433110 0 123455555566789999999984
No 400
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.10 E-value=83 Score=27.19 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=29.3
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC-CcEEEEEChhhHHHHH
Q 023179 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAGTASIFE 143 (286)
Q Consensus 93 l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~-~~~i~aVG~~Ta~~L~ 143 (286)
+.+.|+...+.|+|+..+-..+..+.+.+++.+.. ++.++. |..+...++
T Consensus 176 ~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~~~~ivg-~d~~~~~~~ 226 (274)
T cd06311 176 MQDLLTKFPKIDAVWAHDDDMAVGVLAAIKQAGRTDIKFVVG-GAGSKDMIK 226 (274)
T ss_pred HHHHHHhCCCcCEEEECCCcHHHHHHHHHHHcCCCCCceEEE-eCCCHHHHH
Confidence 44445434457888887777666677777777664 333333 344555554
No 401
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=40.01 E-value=51 Score=27.17 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=22.8
Q ss_pred CCCCEEEEEcCCCCh--h--HHHHHHHhCCCeeEEEEeee
Q 023179 176 KKKCTVLYPASAKAS--N--EIEEGLSNRGFEVVRLNTYT 211 (286)
Q Consensus 176 ~~~~rvL~~~g~~~~--~--~L~~~L~~~G~~V~~~~vY~ 211 (286)
...++|++++|...+ + -+...|.++|++|..+.++.
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~ 62 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGP 62 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEec
Confidence 356899999887642 2 34577889999876644433
No 402
>PLN02778 3,5-epimerase/4-reductase
Probab=39.99 E-value=1.1e+02 Score=27.52 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=36.9
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS 110 (286)
.|+||||-..+ -+..|.+.|.++|.+|... .....+.+.+...+.. ..+|.||-..
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~----~~~~~~~~~v~~~l~~-~~~D~ViH~A 65 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYG----SGRLENRASLEADIDA-VKPTHVFNAA 65 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEe----cCccCCHHHHHHHHHh-cCCCEEEECC
Confidence 48999999876 4678999999999987532 1122233445555532 3678888433
No 403
>PRK10444 UMP phosphatase; Provisional
Probab=39.98 E-value=84 Score=27.69 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=51.1
Q ss_pred CCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC--CccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEECh
Q 023179 59 RGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 59 ~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~--~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~ 136 (286)
.+.+.+..+.|++.|..+..+.= ........+.+.|+.++ --+--|+||..++..++.. . ...+++++|.
T Consensus 19 ~p~a~~~l~~L~~~g~~~~~~Tn---~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~---~--~~~~v~~~g~ 90 (248)
T PRK10444 19 VPGAAEFLHRILDKGLPLVLLTN---YPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRR---Q--EGKKAYVIGE 90 (248)
T ss_pred CccHHHHHHHHHHCCCeEEEEeC---CCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHh---C--CCCEEEEEcC
Confidence 34567888889999887764432 22222344555554432 1234457998888776653 2 2457999996
Q ss_pred h-hHHHHHHhhhccCCCCce
Q 023179 137 G-TASIFEEVIQSSKCSLDV 155 (286)
Q Consensus 137 ~-Ta~~L~~~~~~~~~G~~~ 155 (286)
. ..+.|++. |+.+
T Consensus 91 ~~l~~~l~~~------g~~~ 104 (248)
T PRK10444 91 GALIHELYKA------GFTI 104 (248)
T ss_pred HHHHHHHHHC------cCEe
Confidence 4 66777777 7763
No 404
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=39.91 E-value=1.4e+02 Score=26.48 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=50.8
Q ss_pred HHHHHHhcccCCC-CCCEEEEEcCCCC-----hhHHHHHHHhCCC-eeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeC
Q 023179 164 GKILASELPKNGK-KKCTVLYPASAKA-----SNEIEEGLSNRGF-EVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (286)
Q Consensus 164 ~e~L~~~L~~~~~-~~~rvL~~~g~~~-----~~~L~~~L~~~G~-~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS 236 (286)
...+.+.+.+.-. ...||+|+....+ .+...+.|+..|+ +|..+.++.+.... .++..+.+...|+|+|+.
T Consensus 13 ~~~i~~~~~~lag~~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~--~~~~~~~l~~ad~I~~~G 90 (250)
T TIGR02069 13 DREILREFVSRAGGEDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDVREREDAS--DENAIALLSNATGIFFTG 90 (250)
T ss_pred hHHHHHHHHHHhCCCCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEecCChHHcc--CHHHHHHHhhCCEEEEeC
Confidence 3346666655432 3347887754322 2356678889998 57777776543222 233445567999999999
Q ss_pred hHHHHHHHHHhcc
Q 023179 237 PSAVRSWVNLISD 249 (286)
Q Consensus 237 ~sav~~~~~~~~~ 249 (286)
.+..+ +.+.++.
T Consensus 91 Gnq~~-l~~~l~~ 102 (250)
T TIGR02069 91 GDQLR-ITSLLGD 102 (250)
T ss_pred CCHHH-HHHHHcC
Confidence 99875 4444443
No 405
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=39.87 E-value=2.9e+02 Score=25.04 Aligned_cols=157 Identities=17% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT--- 126 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~--- 126 (286)
+.+|...-+---|....+.|+++|..++.-. +.+..-+.+||.+=-.-....+.+.+.+.
T Consensus 28 ~~~vy~lG~iIHN~~vv~~L~~~Gv~~v~~~-----------------~~~~~g~~ViirAHGv~~~~~~~l~~~g~~vi 90 (281)
T PF02401_consen 28 PGPVYTLGPIIHNPQVVERLEKRGVKVVDDI-----------------DEVPEGDTVIIRAHGVPPEVYEELKERGLEVI 90 (281)
T ss_dssp SS-EEECS-SSS-HHHHHHHHHCTEEEESSG-----------------CGS-TTEEEEE-TT---HHHHHHHHHTTEEEE
T ss_pred CCCEEEecCcccCHHHHHHHHHCCCEEecCc-----------------cccCCCCEEEEeCCCCCHHHHHHHHHcCCEEE
Q ss_pred -------------------CCcEEEEEChhhHHHHHHhhhccCCCCce-eccCCCCCHHHHHHhcccCCCCCCEEEEEcC
Q 023179 127 -------------------PNVRIGVVGAGTASIFEEVIQSSKCSLDV-AFSPSKATGKILASELPKNGKKKCTVLYPAS 186 (286)
Q Consensus 127 -------------------~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~-~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g 186 (286)
.+-.++.+|+...-..+-.. |+-. ...---.+.+++ +.|+.... +++.++.-
T Consensus 91 DaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~-----g~~~~~~~~vv~~~~~~-~~l~~~~~--~kv~vvsQ 162 (281)
T PF02401_consen 91 DATCPFVKKIHKIVRKYAKEGYQIVIIGDKNHPEVIGIL-----GYAPEEKAIVVESPEDV-EKLPISDP--KKVAVVSQ 162 (281)
T ss_dssp E---HHHHHHHHHHHHHHHCT-EEEEES-TT-HHHHHHH-----CCHHTS-EEEESSHHHH-HHGGGSST--TCEEEEE-
T ss_pred ECCChhHHHHHHHHHHHHhcCCEEEEECCCCCceEEEec-----ccccCCceEEeCChhhh-cccCCCCC--CeEEEEEe
Q ss_pred CCChh----HHHHHHHhCCCeeE----EEEeeeeecCCCCcHHHHHHcCCCCEEEE
Q 023179 187 AKASN----EIEEGLSNRGFEVV----RLNTYTTEPVHHVDQTVLKQALSIPVVAV 234 (286)
Q Consensus 187 ~~~~~----~L~~~L~~~G~~V~----~~~vY~~~~~~~~~~~~~~~~~~~d~Ivf 234 (286)
-.-+. .+.+.|+++.-++. .-.||.|...+. ++.+.....|++++
T Consensus 163 TT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~---a~~~La~~vD~miV 215 (281)
T PF02401_consen 163 TTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQE---AARELAKEVDAMIV 215 (281)
T ss_dssp TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHH---HHHHHHCCSSEEEE
T ss_pred ecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHH---HHHHHHhhCCEEEE
No 406
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=39.80 E-value=2.1e+02 Score=26.72 Aligned_cols=57 Identities=26% Similarity=0.209 Sum_probs=46.7
Q ss_pred CCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCHHHHHHHHHcCCCeEEeCCCCC
Q 023179 227 LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETTASAAKRLGLKNVYYPTHPG 283 (286)
Q Consensus 227 ~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~~Ta~~l~~~G~~~v~~~~~ps 283 (286)
..+|.|++.-|..+....+..+.... ++...-+--..|++..+++|.+.++.|..=+
T Consensus 91 ~GvDaviv~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls 148 (347)
T COG0826 91 LGVDAVIVADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELS 148 (347)
T ss_pred cCCCEEEEcCHHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCC
Confidence 48999999999999988887765432 3566778899999999999999888887644
No 407
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=39.69 E-value=1.5e+02 Score=25.48 Aligned_cols=34 Identities=29% Similarity=0.225 Sum_probs=26.2
Q ss_pred CCeEEEeCCCC--chHHHHHHHHhCCCcEEEeceEE
Q 023179 50 NPKVVVTRERG--KNGKLIKALAKHRIDCLELPLIQ 83 (286)
Q Consensus 50 g~~VLitR~~~--~~~~l~~~L~~~G~~v~~~P~~~ 83 (286)
.+-|.|.|... +..++.+.|.+.|++++++++-.
T Consensus 8 ~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t 43 (204)
T TIGR01182 8 AKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRT 43 (204)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 45566777765 45688999999999999999833
No 408
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=39.61 E-value=2.1e+02 Score=23.48 Aligned_cols=118 Identities=17% Similarity=0.218 Sum_probs=60.5
Q ss_pred EEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC-CCCCEEEEEcCCCC-hhHHHHHHHhC--CCeeEE
Q 023179 131 IGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG-KKKCTVLYPASAKA-SNEIEEGLSNR--GFEVVR 206 (286)
Q Consensus 131 i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~-~~~~rvL~~~g~~~-~~~L~~~L~~~--G~~V~~ 206 (286)
+++=|.....+++.. |.. .+...++-+|+..+.+.. .++.++.++.+... .+.+.+.|++. |+++.-
T Consensus 7 ~~~DG~~l~~~~~~~------~~~---~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g 77 (171)
T cd06533 7 VLPDGIGVVWAARLL------GGP---LPERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVG 77 (171)
T ss_pred EecCcHHHHHHHHHc------CCC---CCcccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 455566777777766 654 234555666666665543 24678988877654 33444567665 333322
Q ss_pred EEeeeeecCCCCc-HHHHHHc--CCCCEEEEe--ChHHHHHHHHHhccccCCCceEEEeCH
Q 023179 207 LNTYTTEPVHHVD-QTVLKQA--LSIPVVAVA--SPSAVRSWVNLISDTEQWSNSVACIGE 262 (286)
Q Consensus 207 ~~vY~~~~~~~~~-~~~~~~~--~~~d~Ivft--S~sav~~~~~~~~~~~~~~~~iv~IG~ 262 (286)
|..-+..... +.+++.+ ..+|+|++. +|..= .|+....+. .....++++|.
T Consensus 78 ---~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~PkQE-~~~~~~~~~-l~~~v~~~vG~ 133 (171)
T cd06533 78 ---YHHGYFGPEEEEEIIERINASGADILFVGLGAPKQE-LWIARHKDR-LPVPVAIGVGG 133 (171)
T ss_pred ---ecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHH-HHHHHHHHH-CCCCEEEEece
Confidence 2222222111 2233332 467776665 44443 344444332 22455677775
No 409
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=39.40 E-value=3.2e+02 Score=25.34 Aligned_cols=149 Identities=18% Similarity=0.155 Sum_probs=83.9
Q ss_pred CCCCCCeEEEeCCC-CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWK 122 (286)
Q Consensus 46 ~~l~g~~VLitR~~-~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~~~~~d~IvFTS~~av~~~~~~l~ 122 (286)
.++.++-|+||--. +=+..|++.|-+.|+.|.--= -++.. .+.|..... ++.-. -+=.|++..|+...+..+
T Consensus 25 ~~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agc--l~~~g--ae~L~~~~~s~rl~t~-~LDVT~~esi~~a~~~V~ 99 (322)
T KOG1610|consen 25 DSLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGC--LTEEG--AESLRGETKSPRLRTL-QLDVTKPESVKEAAQWVK 99 (322)
T ss_pred cccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEe--ecCch--HHHHhhhhcCCcceeE-eeccCCHHHHHHHHHHHH
Confidence 46668889999655 457899999999999987522 12111 133333331 12222 455799999999888776
Q ss_pred HcCCCCcE---------EEEEChhh---HHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCCh
Q 023179 123 EAGTPNVR---------IGVVGAGT---ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS 190 (286)
Q Consensus 123 ~~~~~~~~---------i~aVG~~T---a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~ 190 (286)
++-.+.-= ..+.|+.= .+-.++. +++.+...-.-..++...+.+ ..+||+.+.+-.||
T Consensus 100 ~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~-------l~vNllG~irvT~~~lpLlr~---arGRvVnvsS~~GR 169 (322)
T KOG1610|consen 100 KHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKV-------LNVNLLGTIRVTKAFLPLLRR---ARGRVVNVSSVLGR 169 (322)
T ss_pred HhcccccceeEEeccccccccCccccccHHHHHHH-------HhhhhhhHHHHHHHHHHHHHh---ccCeEEEecccccC
Confidence 64222111 12333321 2222222 233343322223344444433 34699998887765
Q ss_pred h--------------------HHHHHHHhCCCeeEEEEe
Q 023179 191 N--------------------EIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 191 ~--------------------~L~~~L~~~G~~V~~~~v 209 (286)
- .|...|...|.+|..++.
T Consensus 170 ~~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiieP 208 (322)
T KOG1610|consen 170 VALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEP 208 (322)
T ss_pred ccCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEecc
Confidence 3 456688888988876654
No 410
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=39.40 E-value=2.8e+02 Score=24.69 Aligned_cols=71 Identities=21% Similarity=0.225 Sum_probs=45.2
Q ss_pred CCe-EEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc
Q 023179 50 NPK-VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (286)
Q Consensus 50 g~~-VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~ 124 (286)
|.. +.+++.. ...+.+.+++.|+.+..+|-... ...|.+++.+.+++ .+.|+||+++.+.-..+.+.++..
T Consensus 31 g~~v~f~~~~~--~~~~~~~i~~~g~~v~~~~~~~~-~~~d~~~~~~~l~~-~~~d~vV~D~y~~~~~~~~~~k~~ 102 (279)
T TIGR03590 31 GAEVAFACKPL--PGDLIDLLLSAGFPVYELPDESS-RYDDALELINLLEE-EKFDILIVDHYGLDADWEKLIKEF 102 (279)
T ss_pred CCEEEEEeCCC--CHHHHHHHHHcCCeEEEecCCCc-hhhhHHHHHHHHHh-cCCCEEEEcCCCCCHHHHHHHHHh
Confidence 444 4555654 34556788999999887764321 11234456666644 378999999987666667767653
No 411
>PRK05872 short chain dehydrogenase; Provisional
Probab=39.23 E-value=2.8e+02 Score=24.63 Aligned_cols=71 Identities=17% Similarity=0.004 Sum_probs=44.5
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccE----EEEeCHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDW----IIITSPEAGSVFLE 119 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~-~~d~----IvFTS~~av~~~~~ 119 (286)
.++.|++||||-... -+..+++.|.++|++++.+- + +.+.+++..+.+. ..++ .=+++..+++.+++
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~--r-----~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~ 77 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVD--L-----EEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAE 77 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe--C-----CHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHH
Confidence 467899999998764 46789999999998765431 1 1223333322222 1222 22578888888877
Q ss_pred HHHH
Q 023179 120 AWKE 123 (286)
Q Consensus 120 ~l~~ 123 (286)
.+.+
T Consensus 78 ~~~~ 81 (296)
T PRK05872 78 EAVE 81 (296)
T ss_pred HHHH
Confidence 7654
No 412
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=39.04 E-value=1.1e+02 Score=29.78 Aligned_cols=93 Identities=12% Similarity=0.067 Sum_probs=54.4
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhc----CCCccEEEEeCHHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNA----DTIFDWIIITSPEAGSVFLEAW 121 (286)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~----~~~~d~IvFTS~~av~~~~~~l 121 (286)
-|.||+|.++-.....-.+++.|.+.|++++.+-.-. ...+. +...+.+.. ....+.++...++-.+ +.+.+
T Consensus 311 ~L~GKrvai~Gdp~~~i~LarfL~elGmevV~vgt~~--~~~~~~~~d~~~l~~~~~~~~~~~~vive~~D~~e-l~~~i 387 (457)
T CHL00073 311 LVRGKSVFFMGDNLLEISLARFLIRCGMIVYEIGIPY--MDKRYQAAELALLEDTCRKMNVPMPRIVEKPDNYN-QIQRI 387 (457)
T ss_pred HHCCCEEEEECCCcHHHHHHHHHHHCCCEEEEEEeCC--CChhhhHHHHHHHHHHhhhcCCCCcEEEeCCCHHH-HHHHH
Confidence 5789999988877788899999999999999882211 11221 111122321 1223456666665443 55555
Q ss_pred HHcCCCCcEEEEEChhhHHHHHHh
Q 023179 122 KEAGTPNVRIGVVGAGTASIFEEV 145 (286)
Q Consensus 122 ~~~~~~~~~i~aVG~~Ta~~L~~~ 145 (286)
++. +..+..-|-..+.=|...
T Consensus 388 ~~~---~pDLlIgG~~~~~Pl~~~ 408 (457)
T CHL00073 388 REL---QPDLAITGMAHANPLEAR 408 (457)
T ss_pred hhC---CCCEEEccccccCchhhc
Confidence 543 344554454555555655
No 413
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=38.92 E-value=1.3e+02 Score=25.67 Aligned_cols=45 Identities=20% Similarity=0.096 Sum_probs=27.4
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChh
Q 023179 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (286)
Q Consensus 93 l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~ 137 (286)
+.+.++....+|+|+..+-.....+++.+.+.+. +++.+++.+..
T Consensus 172 ~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vp~~i~iig~d~~ 219 (268)
T cd06271 172 AAELLALPDRPTAIVCSSELMALGVLAALAEAGLRPGRDVSVVGFDDS 219 (268)
T ss_pred HHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHhCCCCCcceeEEEecCc
Confidence 4444433334778888777666666777777665 35666666654
No 414
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=38.83 E-value=48 Score=31.94 Aligned_cols=46 Identities=9% Similarity=-0.002 Sum_probs=38.6
Q ss_pred CCCCCCCCccccccccccccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEE
Q 023179 25 NRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLE 78 (286)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~ 78 (286)
+++.-+.-.|.+- ..+.||+|+|.-....+..++..|.+.|.+|..
T Consensus 158 ~g~~~HS~~~~~~--------~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~ 203 (443)
T COG2072 158 KGRILHSADWPNP--------EDLRGKRVLVIGAGASAVDIAPELAEVGASVTL 203 (443)
T ss_pred CceEEchhcCCCc--------cccCCCeEEEECCCccHHHHHHHHHhcCCeeEE
Confidence 5556666778887 899999999999999999999999999966643
No 415
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.79 E-value=2.2e+02 Score=24.90 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 92 RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 92 ~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
.+...|....++|+|+.++-..+...++.+.+.+.+++.++..|..+.
T Consensus 176 ~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~di~vvg~d~~~~ 223 (294)
T cd06316 176 IANAMLTQNPDLKGIYAVWDVPAEGVIAALRAAGRDDIKVTTVDLGLN 223 (294)
T ss_pred HHHHHHHhCCCeeEEEeCCCchhHHHHHHHHHcCCCCceEEEeCCCcH
Confidence 344455333467788887777777778888887776677777776553
No 416
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=38.68 E-value=52 Score=30.59 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=51.5
Q ss_pred cccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH
Q 023179 42 TSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (286)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~ 116 (286)
.+...++.+++++...+-+...++-+.|++.|+++...-.+.=...-..++++... .....+.|+.|.+-+|+.
T Consensus 225 ~~~~~~~~~~~v~afaGIg~P~rFf~tL~~~g~~~~~~~~FpDH~~f~~~~l~~l~-~~~~~~~Ll~TeKDaVKl 298 (336)
T COG1663 225 RSDVADLKGKRVVAFAGIGNPQRFFATLRNLGIQVVETLAFPDHYDFSAADLEDLA-KKAQADGLLTTEKDAVKL 298 (336)
T ss_pred ecchhhcCCceEEEEEecCChHHHHHHHHHcCcceeeeecCCchhhccHHHHHHHH-hhhccceEEeeccceeec
Confidence 34446777899999999999999999999999888754333322221224455444 233338899999999984
No 417
>PRK12827 short chain dehydrogenase; Provisional
Probab=38.65 E-value=1.6e+02 Score=24.86 Aligned_cols=89 Identities=17% Similarity=0.159 Sum_probs=46.6
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEE--EEeCHHHHHHHHHHHHH
Q 023179 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWI--IITSPEAGSVFLEAWKE 123 (286)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~-~~~d~I--vFTS~~av~~~~~~l~~ 123 (286)
+.+++||||-..+ -+..+++.|.++|.++..+-..........+.+...+... ..+.++ =++...+++..++.+.+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 5689999998665 3578999999999987654322111101112222222111 122222 23667777777665544
Q ss_pred c-CCCCcEEEEECh
Q 023179 124 A-GTPNVRIGVVGA 136 (286)
Q Consensus 124 ~-~~~~~~i~aVG~ 136 (286)
. +..+.-|.+.|.
T Consensus 84 ~~~~~d~vi~~ag~ 97 (249)
T PRK12827 84 EFGRLDILVNNAGI 97 (249)
T ss_pred HhCCCCEEEECCCC
Confidence 3 222344445553
No 418
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.53 E-value=1.3e+02 Score=25.76 Aligned_cols=36 Identities=11% Similarity=0.007 Sum_probs=18.8
Q ss_pred CccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChh
Q 023179 102 IFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (286)
Q Consensus 102 ~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~ 137 (286)
.+++|+.++-..+..+++.+.+.|. +.+.+++.+..
T Consensus 172 ~~~ai~~~~d~~a~g~~~~l~~~g~~~p~di~iig~d~~ 210 (263)
T cd06280 172 RPEALVASNGLLLLGALRAVRAAGLRIPQDLALAGFDND 210 (263)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCCCCcEEEEEeCCh
Confidence 4556665555555555555555554 24444444443
No 419
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.51 E-value=1.8e+02 Score=24.48 Aligned_cols=32 Identities=9% Similarity=0.034 Sum_probs=25.2
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
+.|++++||-... -+..+++.|.++|++++.+
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~ 35 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGV 35 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEE
Confidence 6689999997654 4678899999999987654
No 420
>PRK06125 short chain dehydrogenase; Provisional
Probab=38.40 E-value=1.9e+02 Score=24.82 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=25.5
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
.+.+++||||-... -+..+++.|.++|++|+.+
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~ 37 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLV 37 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 35689999998754 4678889999999976543
No 421
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=38.35 E-value=11 Score=31.84 Aligned_cols=56 Identities=21% Similarity=0.419 Sum_probs=39.1
Q ss_pred hHHHHHHHhCC-CeeEEEEeeeeecCCCCcH------------------HH-HHHcCCCCEEEEeC-------hHHHHHH
Q 023179 191 NEIEEGLSNRG-FEVVRLNTYTTEPVHHVDQ------------------TV-LKQALSIPVVAVAS-------PSAVRSW 243 (286)
Q Consensus 191 ~~L~~~L~~~G-~~V~~~~vY~~~~~~~~~~------------------~~-~~~~~~~d~IvftS-------~sav~~~ 243 (286)
+.+.+.|++.| .+|+.+.+|+. ..+.... .. ++++...|.|||.. |..++.|
T Consensus 22 ~~~~~~~~~~~~~~v~~~dL~~~-~~p~l~~~~~~~~~~~~~~~~~d~~~~~~~~l~~AD~iV~~~Pl~~~~~Pa~lK~~ 100 (199)
T PF02525_consen 22 DAFLEGLQEAGPHEVEIRDLYEE-FLPVLDSECFAAFRTYEQGPAIDVQSEQIEELLWADHIVFAFPLYWFSMPAQLKGW 100 (199)
T ss_dssp HHHHHHHHHHTTSEEEEEETTTT-T--SSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHSSEEEEEEEEBTTBC-HHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEECccc-ccccchHHHHHhhhhhhhhhhhhHHHHHHHHHHHcCcceEeccceecccChhHHHH
Confidence 56778999999 89999999997 3222111 01 23345788888865 6899999
Q ss_pred HHHh
Q 023179 244 VNLI 247 (286)
Q Consensus 244 ~~~~ 247 (286)
++.+
T Consensus 101 iD~v 104 (199)
T PF02525_consen 101 IDRV 104 (199)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9987
No 422
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=38.03 E-value=1.5e+02 Score=26.08 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=41.6
Q ss_pred cCCCCEEEEeChHHHHHHHHHhccc-c-CCCceEEEeCHHHHHHHHHcCCCeE
Q 023179 226 ALSIPVVAVASPSAVRSWVNLISDT-E-QWSNSVACIGETTASAAKRLGLKNV 276 (286)
Q Consensus 226 ~~~~d~IvftS~sav~~~~~~~~~~-~-~~~~~iv~IG~~Ta~~l~~~G~~~v 276 (286)
..+-.+|=+-+.+++..|++.+.+. . ..+...++-+..|+..|+++|+...
T Consensus 18 v~~gmviGlGTGST~~~fI~~Lg~~~~~e~~i~~V~TS~~t~~l~~~~GI~v~ 70 (227)
T COG0120 18 VKDGMVIGLGTGSTAAYFIEALGRRVKGELDIGGVPTSFQTEELARELGIPVS 70 (227)
T ss_pred hcCCCEEEEcCcHHHHHHHHHHHHhhccCccEEEEeCCHHHHHHHHHcCCeec
Confidence 3567788899999999999999742 1 1357889999999999999999653
No 423
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=38.02 E-value=1.9e+02 Score=25.59 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCc-hHHHHHHhcCCCccEEEEeC-HHHHHHHHHHHHHcCCC
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDT-DRLSSVLNADTIFDWIIITS-PEAGSVFLEAWKEAGTP 127 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~l~~~l~~~~~~d~IvFTS-~~av~~~~~~l~~~~~~ 127 (286)
..+.+.+++.|+.+.....+.... .+. ..+.+.+ ....|.|++.+ ......+++.+.+.++.
T Consensus 151 ~~~~~~~~~~G~~v~~~~~~~~~~-~d~~~~~~~l~--~~~pdaIi~~~~~~~~~~~~~~l~~~g~~ 214 (312)
T cd06333 151 KELKALAPKYGIEVVADERYGRTD-TSVTAQLLKIR--AARPDAVLIWGSGTPAALPAKNLRERGYK 214 (312)
T ss_pred HHHHHHHHHcCCEEEEEEeeCCCC-cCHHHHHHHHH--hCCCCEEEEecCCcHHHHHHHHHHHcCCC
Confidence 345566667777664332222111 121 1222222 13467777765 33334466666666553
No 424
>PRK12829 short chain dehydrogenase; Provisional
Probab=37.89 E-value=1.4e+02 Score=25.55 Aligned_cols=33 Identities=15% Similarity=0.101 Sum_probs=26.4
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEE
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (286)
..+.+++||||-..+. +..+++.|.++|.++..
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~ 40 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHV 40 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEE
Confidence 4578899999987653 57889999999997653
No 425
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=37.76 E-value=1.9e+02 Score=27.56 Aligned_cols=61 Identities=26% Similarity=0.130 Sum_probs=38.2
Q ss_pred cCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc---CCCCEEEEe
Q 023179 173 KNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPVVAVA 235 (286)
Q Consensus 173 ~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~---~~~d~Ivft 235 (286)
....+|.|||++....=.+-+.+.++.+|.+|..+.+=--.+. .++++.+.+ ..+++|.++
T Consensus 75 sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v--~p~~v~~~L~~~~~~~~V~~v 138 (383)
T COG0075 75 SLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAV--DPEEVEEALDKDPDIKAVAVV 138 (383)
T ss_pred hccCCCCeEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCC--CHHHHHHHHhcCCCccEEEEE
Confidence 3334678999998776667789999999998876665322222 222332222 357777764
No 426
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=37.74 E-value=91 Score=28.38 Aligned_cols=61 Identities=10% Similarity=0.045 Sum_probs=40.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~ 111 (286)
.|.+|+++.+..-...+...++..|+++..+|+-. ....|.+.+.+.+.. .+.+.|+++++
T Consensus 73 ~g~~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~~~~~l~~~i~~-~~~~~v~i~~~ 133 (356)
T cd06451 73 PGDKVLVGVNGVFGDRWADMAERYGADVDVVEKPW-GEAVSPEEIAEALEQ-HDIKAVTLTHN 133 (356)
T ss_pred CCCEEEEecCCchhHHHHHHHHHhCCCeEEeecCC-CCCCCHHHHHHHHhc-cCCCEEEEecc
Confidence 58899998764433345667778899999988632 122345677777632 35678888777
No 427
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=37.67 E-value=3.2e+02 Score=24.91 Aligned_cols=211 Identities=8% Similarity=0.029 Sum_probs=110.4
Q ss_pred CCCCCCeEEEeCCCC--chHHHH------HHHHhCCCcE--EEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHH
Q 023179 46 ASNSNPKVVVTRERG--KNGKLI------KALAKHRIDC--LELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (286)
Q Consensus 46 ~~l~g~~VLitR~~~--~~~~l~------~~L~~~G~~v--~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~ 115 (286)
..+.|+.|+|..+.. .++.+. ..|++.|+.- ..+|.+-.-.. | ... ..- .+-+++
T Consensus 34 ~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~~~a~~i~~ViPYl~YsRQ-D-----r~~---~~~------e~isak 98 (302)
T PLN02369 34 ESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKRITAVIPYFGYARA-D-----RKT---QGR------ESIAAK 98 (302)
T ss_pred CCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHHcCCCeEEEEeeccccccc-c-----ccc---CCC------CCchHH
Confidence 467789998887742 244444 4556788864 33555444221 1 111 111 233456
Q ss_pred HHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHH
Q 023179 116 VFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEE 195 (286)
Q Consensus 116 ~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~ 195 (286)
.+.+.+...|. -+++++-.++.+. +.+| .+.++.. .....++++|.+....+.+++++.-+.+...+.+
T Consensus 99 ~va~lL~~~g~--d~vi~vDlHs~~i-~~~F-----~ip~~~l---~~~~~~~~~i~~~~~~~~~~vvVspd~gg~~~a~ 167 (302)
T PLN02369 99 LVANLITEAGA--DRVLACDLHSGQS-MGYF-----DIPVDHV---YGQPVILDYLASKTISSPDLVVVSPDVGGVARAR 167 (302)
T ss_pred HHHHHHHhcCC--CEEEEEECCchHH-hhcc-----CCceecc---cchHHHHHHHHHhCCCCCceEEEEECcChHHHHH
Confidence 66666655554 3566666666443 4443 4333222 2334556666443222245667776677666666
Q ss_pred HHHhC--CCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEE----EeChHHHHHHHHHhccccCCCceEEE----eCHHHH
Q 023179 196 GLSNR--GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA----VASPSAVRSWVNLISDTEQWSNSVAC----IGETTA 265 (286)
Q Consensus 196 ~L~~~--G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~Iv----ftS~sav~~~~~~~~~~~~~~~~iv~----IG~~Ta 265 (286)
.+.+. +..+..+..|+.................-++|+ .+++.++....+.+++.+...+.++| ..+...
T Consensus 168 ~~a~~l~~~~~~~l~k~R~~~~~~~~~~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v~~~~a~ 247 (302)
T PLN02369 168 AFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSPPAI 247 (302)
T ss_pred HHHHHcCCCCEEEEEEecCCcceeeeEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEeeeeCHHHH
Confidence 66532 456655665543211100000000122333443 57888888888888776543455555 345556
Q ss_pred HHHHHcCCCeEEeCCCC
Q 023179 266 SAAKRLGLKNVYYPTHP 282 (286)
Q Consensus 266 ~~l~~~G~~~v~~~~~p 282 (286)
+.+++.++..+++.+..
T Consensus 248 ~~l~~~~~~~iv~t~ti 264 (302)
T PLN02369 248 ERLSSGLFQEVIVTNTI 264 (302)
T ss_pred HHHHhCCCCEEEEeCCC
Confidence 66777788887766553
No 428
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=37.44 E-value=3.4e+02 Score=25.92 Aligned_cols=98 Identities=8% Similarity=-0.007 Sum_probs=57.1
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC
Q 023179 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~ 125 (286)
.-|.|++|++.-+..+...+...|++.|+++...-. ... +.......+..+. .+.+++-.++-.+ +.+.+.+.
T Consensus 296 ~~L~Gkrv~i~~g~~~~~~~~~~l~elGmevv~~g~---~~~-~~~~~~~~~~~~~-~~~~i~~~~d~~e-~~~~i~~~- 368 (421)
T cd01976 296 PRLEGKTVMLYVGGLRPRHYIGAYEDLGMEVVGTGY---EFA-HRDDYERTEVIPK-EGTLLYDDVTHYE-LEEFVKRL- 368 (421)
T ss_pred HHcCCCEEEEECCCCcHHHHHHHHHHCCCEEEEEEe---ecC-CHHHHhhHHhhcC-CceEEEcCCCHHH-HHHHHHHh-
Confidence 478899999987666778888999999999996333 111 1122223332232 2555554443333 44544443
Q ss_pred CCCcEEEEEChhhHHHHHHhhhccCCCCceecc
Q 023179 126 TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFS 158 (286)
Q Consensus 126 ~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~ 158 (286)
+..++.=|..-....++. |+..+.+
T Consensus 369 --~pDliig~~~~~~~a~k~------giP~~~~ 393 (421)
T cd01976 369 --KPDLIGSGIKEKYVFQKM------GIPFRQM 393 (421)
T ss_pred --CCCEEEecCcchhhhhhc------CCCeEeC
Confidence 445655555655555666 8776443
No 429
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=37.40 E-value=2.9e+02 Score=24.49 Aligned_cols=76 Identities=16% Similarity=0.079 Sum_probs=42.2
Q ss_pred CCeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-HHHHHHHHHHHHH
Q 023179 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-PEAGSVFLEAWKE 123 (286)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS-~~av~~~~~~l~~ 123 (286)
.++|.+...... ...+.+.+++.|+++...-.+... ..|.......+. ..+.|.|++.. +.....|++.+.+
T Consensus 137 ~~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-~~d~~~~v~~l~-~~~pd~v~~~~~~~~~~~~~~~~~~ 214 (312)
T cd06346 137 YKSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEG-KSSYSSEVAAAA-AGGPDALVVIGYPETGSGILRSAYE 214 (312)
T ss_pred CCeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCC-CCCHHHHHHHHH-hcCCCEEEEecccchHHHHHHHHHH
Confidence 466666543322 245677788889888753322221 123332223331 35688887763 4445557777877
Q ss_pred cCCC
Q 023179 124 AGTP 127 (286)
Q Consensus 124 ~~~~ 127 (286)
.++.
T Consensus 215 ~G~~ 218 (312)
T cd06346 215 QGLF 218 (312)
T ss_pred cCCC
Confidence 7763
No 430
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=37.39 E-value=1.1e+02 Score=28.19 Aligned_cols=63 Identities=17% Similarity=0.228 Sum_probs=40.9
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
.|.+|+++.+..-...+...++..|+++..+|+-.. ...|.+.+.+.+....+.+.|.++.++
T Consensus 79 ~~~~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~ 141 (368)
T PRK13479 79 RDGKVLVPDNGAYGARIAQIAEYLGIAHVVLDTGED-EPPDAAEVEAALAADPRITHVALVHCE 141 (368)
T ss_pred CCCeEEEEeCCchHHHHHHHHHHcCCcEEEEECCCC-CCCCHHHHHHHHHhCCCCcEEEEEccc
Confidence 466788887654444455677788999999886421 223456777766433456678887763
No 431
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=37.29 E-value=1.4e+02 Score=28.64 Aligned_cols=86 Identities=14% Similarity=0.058 Sum_probs=49.0
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc---CCCCE-EEE
Q 023179 164 GKILASELPKNGKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA---LSIPV-VAV 234 (286)
Q Consensus 164 ~e~L~~~L~~~~~~~~rvL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~---~~~d~-Ivf 234 (286)
+..+++.+.... -++|.++..+. ..+.+.+.+++.|+.|.....|............++.+ ...++ |++
T Consensus 162 a~ai~~ll~~~~--W~~Vaii~~~~~yG~~~~~~~~~~~~~~gi~i~~~~~i~~~~~~~d~~~~l~~l~~~~~a~vVvl~ 239 (458)
T cd06375 162 AKAMAEILRFFN--WTYVSTVASEGDYGETGIEAFEQEARLRNICIATSEKVGRSADRKSYDSVIRKLLQKPNARVVVLF 239 (458)
T ss_pred HHHHHHHHHHCC--CeEEEEEEeCchHHHHHHHHHHHHHHHCCeeEEEEEEecCCCCHHHHHHHHHHHhccCCCEEEEEe
Confidence 455666554332 25676664332 35567788888998776555443322221122233332 36786 666
Q ss_pred eChHHHHHHHHHhcccc
Q 023179 235 ASPSAVRSWVNLISDTE 251 (286)
Q Consensus 235 tS~sav~~~~~~~~~~~ 251 (286)
.+...+..|+..+.+.+
T Consensus 240 ~~~~~~~~ll~~a~~~g 256 (458)
T cd06375 240 TRSEDARELLAAAKRLN 256 (458)
T ss_pred cChHHHHHHHHHHHHcC
Confidence 67788888887776654
No 432
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=37.27 E-value=89 Score=29.50 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=26.7
Q ss_pred CCCccEEEEeCHH---H----HHHHHHHHHHcCCCCcEEEEECh
Q 023179 100 DTIFDWIIITSPE---A----GSVFLEAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 100 ~~~~d~IvFTS~~---a----v~~~~~~l~~~~~~~~~i~aVG~ 136 (286)
+.++|.|+|-||. + +..|++.+....+.+.++++.|.
T Consensus 298 ~~~~d~ii~GspT~~~~~~~~~~~~l~~l~~~~~~~K~~a~FGs 341 (394)
T PRK11921 298 VFKSKAILVGSSTINRGILSSTAAILEEIKGLGFKNKKAAAFGS 341 (394)
T ss_pred HHhCCEEEEECCCcCccccHHHHHHHHHhhccCcCCCEEEEEec
Confidence 3569999999988 2 45566666655566778888886
No 433
>PRK07206 hypothetical protein; Provisional
Probab=37.10 E-value=3.6e+02 Score=25.29 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=24.7
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEe
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~ 79 (286)
.++||+.-+......+.+.+++.|++++.+
T Consensus 2 ~k~~liv~~~~~~~~~~~a~~~~G~~~v~v 31 (416)
T PRK07206 2 MKKVVIVDPFSSGKFLAPAFKKRGIEPIAV 31 (416)
T ss_pred CCeEEEEcCCchHHHHHHHHHHcCCeEEEE
Confidence 467888888777788999999999988754
No 434
>PRK06490 glutamine amidotransferase; Provisional
Probab=37.10 E-value=2.8e+02 Score=24.26 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=33.6
Q ss_pred CCCEEEEEcCC--CChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeC
Q 023179 177 KKCTVLYPASA--KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (286)
Q Consensus 177 ~~~rvL~~~g~--~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS 236 (286)
...||+++.-. ..-..|.+.|++.|.++..+.+|.-.+.++ .+.++|.++++-
T Consensus 6 ~~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~-------~l~~~dgvii~G 60 (239)
T PRK06490 6 DKRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPD-------TLEDHAGAVIFG 60 (239)
T ss_pred CCceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCC-------cccccCEEEEEC
Confidence 34688888332 345679999999999887666554332221 135688777763
No 435
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=36.95 E-value=1.8e+02 Score=24.89 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=20.5
Q ss_pred CccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChh
Q 023179 102 IFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (286)
Q Consensus 102 ~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~ 137 (286)
.+|+|+..+-..+..+.+.+.+.+. +++.+++.+..
T Consensus 178 ~~~ai~~~~d~~A~g~~~al~~~g~~ip~dv~v~g~d~~ 216 (264)
T cd06274 178 LPRALFTTSYTLLEGVLRFLRERPGLAPSDLRIATFDDH 216 (264)
T ss_pred CCcEEEEcChHHHHHHHHHHHHcCCCCCcceEEEEeCCH
Confidence 4566666665555556666666554 24555555543
No 436
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=36.92 E-value=1.1e+02 Score=25.22 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=32.8
Q ss_pred chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc---CCCccEEEEeCHHHH
Q 023179 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA---DTIFDWIIITSPEAG 114 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~---~~~~d~IvFTS~~av 114 (286)
....+...|++.|+++.....+ + .|.+.+.+.+++ ...+|.|+.|-..++
T Consensus 23 n~~~l~~~L~~~G~~v~~~~iv---~-Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~ 75 (163)
T TIGR02667 23 SGQYLVERLTEAGHRLADRAIV---K-DDIYQIRAQVSAWIADPDVQVILITGGTGF 75 (163)
T ss_pred cHHHHHHHHHHCCCeEEEEEEc---C-CCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 3558888899999987654433 2 233556666644 246998888866654
No 437
>PRK07060 short chain dehydrogenase; Provisional
Probab=36.90 E-value=2e+02 Score=24.30 Aligned_cols=33 Identities=21% Similarity=0.113 Sum_probs=25.5
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEE
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~ 78 (286)
.++.|++++||-..+ -+..+++.|.++|.+++.
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~ 38 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVA 38 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEE
Confidence 456789999997653 467888999999987553
No 438
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=36.84 E-value=77 Score=24.36 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=30.2
Q ss_pred CeEEEeCCCCch------HHHHHHHHhCCCcEEEeceEEeeeCC-CchHHHHHHhcCCCccEEEEeCHH
Q 023179 51 PKVVVTRERGKN------GKLIKALAKHRIDCLELPLIQHAQGP-DTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 51 ~~VLitR~~~~~------~~l~~~L~~~G~~v~~~P~~~~~~~~-~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
+.|+..||.++. +.+.+..+++|...+++|+-.-.... +.+.+.+.++.....=++-.-|.+
T Consensus 29 ktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~~~~Pvl~hC~sG~ 97 (110)
T PF04273_consen 29 KTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALESLPKPVLAHCRSGT 97 (110)
T ss_dssp -EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHTTTTSEEEE-SCSH
T ss_pred cEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEECCCCh
Confidence 567778987432 34667888999999999998654322 234555566555444333333333
No 439
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.79 E-value=1.7e+02 Score=24.75 Aligned_cols=31 Identities=19% Similarity=0.077 Sum_probs=24.8
Q ss_pred CCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEE
Q 023179 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (286)
Q Consensus 48 l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (286)
+.|++||||-..+. +..+++.|.++|.+++.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~ 33 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAV 33 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 45789999987653 67899999999988763
No 440
>PRK09271 flavodoxin; Provisional
Probab=36.77 E-value=1.5e+02 Score=23.97 Aligned_cols=23 Identities=0% Similarity=0.137 Sum_probs=14.0
Q ss_pred CCCCEEEEeCh--------HHHHHHHHHhcc
Q 023179 227 LSIPVVAVASP--------SAVRSWVNLISD 249 (286)
Q Consensus 227 ~~~d~IvftS~--------sav~~~~~~~~~ 249 (286)
...++|+|.|| ..++.|++.+..
T Consensus 50 ~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~ 80 (160)
T PRK09271 50 EDYDLYLLGTWTDNAGRTPPEMKRFIAELAE 80 (160)
T ss_pred ccCCEEEEECcccCCCcCCHHHHHHHHHHHH
Confidence 45677777773 246667665543
No 441
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=36.70 E-value=4.2e+02 Score=26.00 Aligned_cols=39 Identities=10% Similarity=0.018 Sum_probs=32.5
Q ss_pred ccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEece
Q 023179 43 SASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPL 81 (286)
Q Consensus 43 ~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~ 81 (286)
+.++||.|.||..+=.-. +...|.+.|.+.|++|.....
T Consensus 38 ~~~~pl~G~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~~~~ 77 (476)
T PTZ00075 38 GPSKPLKGARITGCLHMTVQTAVLIETLKALGAEVRWCSC 77 (476)
T ss_pred hccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcC
Confidence 346999999999997754 678999999999999987654
No 442
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=36.68 E-value=1.9e+02 Score=24.62 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=25.0
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEE
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~ 77 (286)
.+.|++||||-..+ -+..+++.|.++|.++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~ 35 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVA 35 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEE
Confidence 35689999998765 36689999999999865
No 443
>PRK10494 hypothetical protein; Provisional
Probab=36.67 E-value=1.2e+02 Score=26.97 Aligned_cols=76 Identities=9% Similarity=0.072 Sum_probs=44.8
Q ss_pred CCeEEEeCCCC------chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH
Q 023179 50 NPKVVVTRERG------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (286)
Q Consensus 50 g~~VLitR~~~------~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~ 123 (286)
+.+|+++-... +++...+.+.+.|+....+ ..+....+..+.....-+-++.-.++++||+.=..-....+++
T Consensus 121 ~~~ii~SGg~~~~~~~sEA~~~~~~l~~lGVp~~~I-i~e~~s~nT~eNa~~~~~~~~~~~iiLVTsa~Hm~RA~~~f~~ 199 (259)
T PRK10494 121 GAKLIFTGGAAKTNTVSTAEVGARVAQSLGVPREDI-ITLDLPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQ 199 (259)
T ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHcCCCHHHe-eeCCCCCCHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHHHHH
Confidence 57788886432 3466677788899877433 2222332323433332222344569999999877766666655
Q ss_pred cCC
Q 023179 124 AGT 126 (286)
Q Consensus 124 ~~~ 126 (286)
.|+
T Consensus 200 ~Gl 202 (259)
T PRK10494 200 EGL 202 (259)
T ss_pred cCC
Confidence 554
No 444
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=36.60 E-value=26 Score=31.43 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=36.1
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH
Q 023179 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (286)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~ 111 (286)
|||||+-..+ -+..+.+.|.+.|.++..+.-- .....|.+.+.+.+.. ..+|+||.+-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~-~~dl~d~~~~~~~~~~-~~pd~Vin~aa 60 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS-DLDLTDPEAVAKLLEA-FKPDVVINCAA 60 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT-CS-TTSHHHHHHHHHH-H--SEEEE---
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch-hcCCCCHHHHHHHHHH-hCCCeEeccce
Confidence 6899998766 4678899998888777655211 1112344566666633 36899998853
No 445
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=36.60 E-value=29 Score=30.74 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=32.0
Q ss_pred CCCCEEEEeChHHHHH----HHHHhccccCCCceEEEeCHH----HHHHHHHcCCCeEEeCCCC
Q 023179 227 LSIPVVAVASPSAVRS----WVNLISDTEQWSNSVACIGET----TASAAKRLGLKNVYYPTHP 282 (286)
Q Consensus 227 ~~~d~IvftS~sav~~----~~~~~~~~~~~~~~iv~IG~~----Ta~~l~~~G~~~v~~~~~p 282 (286)
-++|.+++.||+.+-- .-+.+.. .+.+.++||.. ..+++++.||--++++-+|
T Consensus 58 ~~pdf~I~isPN~~~PGP~~ARE~l~~---~~iP~IvI~D~p~~k~kd~l~~~g~GYIivk~Dp 118 (276)
T PF01993_consen 58 WDPDFVIVISPNAAAPGPTKAREMLSA---KGIPCIVISDAPTKKAKDALEEEGFGYIIVKADP 118 (276)
T ss_dssp H--SEEEEE-S-TTSHHHHHHHHHHHH---SSS-EEEEEEGGGGGGHHHHHHTT-EEEEETTS-
T ss_pred hCCCEEEEECCCCCCCCcHHHHHHHHh---CCCCEEEEcCCCchhhHHHHHhcCCcEEEEecCc
Confidence 3899999999987532 2233322 26788887543 4788999999988888776
No 446
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=36.56 E-value=75 Score=30.54 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=45.9
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeC----CCc-----hHHHHHHhcCCC---ccEEEEeCHH----
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQG----PDT-----DRLSSVLNADTI---FDWIIITSPE---- 112 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~----~~~-----~~l~~~l~~~~~---~d~IvFTS~~---- 112 (286)
.|.+||+.|.-. ......|.-.|+.+++++..+.... -+. +.+.+.++.... +..+++|||+
T Consensus 105 ~gd~VLv~RN~H--kSv~~alil~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv 182 (417)
T PF01276_consen 105 PGDKVLVDRNCH--KSVYNALILSGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGV 182 (417)
T ss_dssp TTCEEEEETT----HHHHHHHHHHTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSE
T ss_pred CCCEEEEcCCcH--HHHHHHHHHcCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeE
Confidence 489999999764 4555677778999999888743211 122 567777765443 5569999996
Q ss_pred --HHHHHHHHHHH
Q 023179 113 --AGSVFLEAWKE 123 (286)
Q Consensus 113 --av~~~~~~l~~ 123 (286)
-++.+.+.+.+
T Consensus 183 ~~di~~I~~~~h~ 195 (417)
T PF01276_consen 183 CYDIKEIAEICHK 195 (417)
T ss_dssp EE-HHHHHHHHCC
T ss_pred EECHHHHHHHhcc
Confidence 34555555443
No 447
>PRK13243 glyoxylate reductase; Reviewed
Probab=36.53 E-value=3.4e+02 Score=24.96 Aligned_cols=172 Identities=12% Similarity=0.035 Sum_probs=0.0
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-HHHHHHHHHHHHcCCCC
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-EAGSVFLEAWKEAGTPN 128 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~-~av~~~~~~l~~~~~~~ 128 (286)
.++|+++.+.. ....+.|++. ..+-.+......+.+++.+.+ .++|.++..+. .--+.+++.+.+..+-.
T Consensus 2 ~~kil~~~~~~--~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~---~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~ 72 (333)
T PRK13243 2 KPKVFITREIP--ENGIEMLEEH----FEVEVWEDEREIPREVLLEKV---RDVDALVTMLSERIDCEVFEAAPRLRIVA 72 (333)
T ss_pred CceEEEECCCC--HHHHHHHhcC----ceEEEecCCCCCCHHHHHHHh---CCCcEEEEeCCCCCCHHHHhhCCCCeEEE
Q ss_pred cEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc-----------------------------------c
Q 023179 129 VRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP-----------------------------------K 173 (286)
Q Consensus 129 ~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~-----------------------------------~ 173 (286)
..-.-+-.--.+++.+. |+.+...| +.+++.+++... .
T Consensus 73 ~~~~G~d~id~~~~~~~------gI~v~n~~-g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g 145 (333)
T PRK13243 73 NYAVGYDNIDVEEATRR------GIYVTNTP-GVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLG 145 (333)
T ss_pred ecCccccccCHHHHHHc------CCEEEECC-CCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccc
Q ss_pred CCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeee----cCCCCcHHHHHHcCCCCEEEEeCh
Q 023179 174 NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE----PVHHVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 174 ~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~----~~~~~~~~~~~~~~~~d~IvftS~ 237 (286)
....|+++.++.-..-...+...|+..|.+|..+..|... ..........+.+...|+|++.-|
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP 213 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVP 213 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCC
No 448
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=36.46 E-value=80 Score=29.43 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHH----HHHHcCCCCEEEEeC
Q 023179 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT----VLKQALSIPVVAVAS 236 (286)
Q Consensus 177 ~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~----~~~~~~~~d~IvftS 236 (286)
.++++|+++..+-.......|.++|.. .+.+..+......... .+.-...+|+|++.|
T Consensus 173 ~~k~vLvIGaGem~~l~a~~L~~~g~~--~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t 234 (338)
T PRK00676 173 KKASLLFIGYSEINRKVAYYLQRQGYS--RITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGS 234 (338)
T ss_pred cCCEEEEEcccHHHHHHHHHHHHcCCC--EEEEEcCCccccchhhhhhhhhhcccCCCEEEEcC
Confidence 678999999888888889999999863 2333333322111111 112235899999853
No 449
>PRK06841 short chain dehydrogenase; Provisional
Probab=36.38 E-value=1.8e+02 Score=24.72 Aligned_cols=83 Identities=13% Similarity=0.030 Sum_probs=46.0
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCc--cEEEEeCHHHHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIF--DWIIITSPEAGSVFLEAWKE 123 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~--d~IvFTS~~av~~~~~~l~~ 123 (286)
.+.|++||||.... -+..+++.|.++|++++.+- +. .+...+...+.. ... --.=+++..+++.+++.+.+
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~--r~---~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~ 85 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLD--RS---EDVAEVAAQLLG-GNAKGLVCDVSDSQSVEAAVAAVIS 85 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe--CC---HHHHHHHHHhhC-CceEEEEecCCCHHHHHHHHHHHHH
Confidence 46789999998654 46788999999999765431 11 111112222211 111 11225778888887776654
Q ss_pred cC-CCCcEEEEEC
Q 023179 124 AG-TPNVRIGVVG 135 (286)
Q Consensus 124 ~~-~~~~~i~aVG 135 (286)
.. .-+.-|.+.|
T Consensus 86 ~~~~~d~vi~~ag 98 (255)
T PRK06841 86 AFGRIDILVNSAG 98 (255)
T ss_pred HhCCCCEEEECCC
Confidence 31 1234444444
No 450
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=36.38 E-value=4.1e+02 Score=25.74 Aligned_cols=193 Identities=17% Similarity=0.133 Sum_probs=104.3
Q ss_pred CchHHHHHHHHhCCCcEEEeceEEe------------eeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CC
Q 023179 60 GKNGKLIKALAKHRIDCLELPLIQH------------AQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GT 126 (286)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~------------~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~-~~ 126 (286)
.+-.++.+.|++.|+++..+|-+.- .+..+ ..+++ +++..+...-|..++.+ ..+.+.+++. +.
T Consensus 182 ~D~~elk~lL~~~Gl~v~~lpd~s~~ld~~l~~~~~~~~~gg-~t~ee-i~~~~~A~lniv~~~~~-~~~a~~Lee~~Gi 258 (455)
T PRK14476 182 GDIEELREIIEAFGLEPIILPDLSGSLDGHLPDDWTPTTLGG-TTLEE-IRELGRSAATIAIGESM-RKAAEALEARTGV 258 (455)
T ss_pred ccHHHHHHHHHHcCCceEEecCccccccCCCCCcccccCCCC-CCHHH-HHhhccCcEEEEecHHH-HHHHHHHHHHhCC
Confidence 4568999999999999988875431 11111 12222 22455556666668765 4566666653 33
Q ss_pred CCcEE-EEECh-hhHHHHHHhhhccCCCCceeccCCCC--CHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhC
Q 023179 127 PNVRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNR 200 (286)
Q Consensus 127 ~~~~i-~aVG~-~Ta~~L~~~~~~~~~G~~~~~~~~~~--~~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~L~~~ 200 (286)
+-... .-+|- .|.+.|++..+.- |.. .|+.. .-+.+.+.+... ...|+|+.+..+....-.|...|.+.
T Consensus 259 P~~~~~~p~G~~~t~~~l~~l~~~~--g~~---~~~~i~~er~~~~~~~~d~~~~l~gkrvai~~~~~~~~~la~~L~el 333 (455)
T PRK14476 259 PYLVFPSLTGLEAVDRFIATLAQIS--GRP---VPAKYRRQRAQLQDAMLDGHFYFGGKRVAIAAEPDLLLALGSFLAEM 333 (455)
T ss_pred CeEecCCCcChHHHHHHHHHHHHHH--CCC---CcHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCHHHHHHHHHHHHHC
Confidence 32211 12554 6677777663211 322 12110 011233333322 12678988887666666788999999
Q ss_pred CCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeE
Q 023179 201 GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 276 (286)
Q Consensus 201 G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v 276 (286)
|+.|..+.+... . + ..+.+. .+-+++.....++. .+. +..++.-+......++++|..-+
T Consensus 334 G~~v~~~~~~~~---~---~-~~~~~~-~~~i~~~D~~~le~---~~~-----~~dliig~s~~~~~a~~~gip~~ 393 (455)
T PRK14476 334 GAEIVAAVTTTK---S---P-ALEDLP-AEEVLIGDLEDLEE---LAE-----GADLLITNSHGRQAAERLGIPLL 393 (455)
T ss_pred CCEEEEEEeCCC---c---H-HHHhCC-cCcEEeCCHHHHHH---hcc-----CCCEEEECchhHHHHHHcCCCEE
Confidence 999977666442 1 1 122232 23344555444333 222 34466666677777777776543
No 451
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.31 E-value=1.7e+02 Score=25.09 Aligned_cols=46 Identities=22% Similarity=0.142 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChh
Q 023179 92 RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (286)
Q Consensus 92 ~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~ 137 (286)
.+.+.++....+|+|+.++-..+..+.+.+.+.+. +++.+++.+..
T Consensus 161 ~~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~vp~di~vigfd~~ 209 (265)
T cd01543 161 ELAQWLQSLPKPVGIFACTDARARQLLEACRRAGIAVPEEVAVLGVDND 209 (265)
T ss_pred HHHHHHhcCCCCcEEEecChHHHHHHHHHHHHhCCCCCCceEEEeeCCc
Confidence 34444433345677777777776667777776665 35556666543
No 452
>PF01321 Creatinase_N: Creatinase/Prolidase N-terminal domain; InterPro: IPR000587 Creatinase or creatine amidinohydrolase (3.5.3.3 from EC) catalyses the conversion of creatine and water to sarcosine and urea. The enzyme works as a homodimer, and is induced by choline chloride. Each monomer of creatinase has two clearly defined domains, a small N-terminal domain, and a large C-terminal domain. The structure of the C-terminal region represents the "pita-bread" fold. The fold contains both alpha helices and an anti-parallel beta sheet within two structurally similar domains that are thought to be derived from an ancient gene duplication. The active site, where conserved, is located between the two domains. The fold is common to methionine aminopeptidase (3.4.11.18 from EC), aminopeptidase P (3.4.11.9 from EC), prolidase (3.4.13.9 from EC), agropine synthase and creatinase (3.5.3.3 from EC). Though many of these peptidases require a divalent cation, creatinase is not a metal-dependent enzyme [, , ]. ; GO: 0016787 hydrolase activity; PDB: 1PV9_A 3CTZ_A 3IL0_B 3PN9_A 2HOW_A 1WN1_B 3I7M_A 1CHM_B 3QOC_D 1KP0_B ....
Probab=36.28 E-value=1.4e+02 Score=22.49 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=45.2
Q ss_pred hHHHHHHhcCCCccEEEEeCHHHHHHHHHHH---HHcC------CCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCC
Q 023179 91 DRLSSVLNADTIFDWIIITSPEAGSVFLEAW---KEAG------TPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPS 160 (286)
Q Consensus 91 ~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l---~~~~------~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~ 160 (286)
+++.+.++ ..+.|++++|++..+.+|.... .... .++..+++- +.......+... ...+....+
T Consensus 3 ~rl~~~m~-~~gid~lll~~~~ni~YltG~~~~~~~~~~~l~i~~~~~~l~~~~~~~~~~~~~~~~-----~~~v~~~~~ 76 (132)
T PF01321_consen 3 ERLRAAMA-EAGIDALLLTSPENIRYLTGFRWQPGERPVLLVITADGAVLFVPKGEYERAAEESAP-----DDEVVEYED 76 (132)
T ss_dssp HHHHHHHH-HTT-SEEEEESHHHHHHHHS--ST-TSSEEEEEEESSSEEEEEEGGGHHHHHHHHTT-----SSEEEEEST
T ss_pred HHHHHHHH-HCCCCEEEEcChhhceEecCCCcCCCcceEEEEecccCcEEEeccccHHHHHHhhcC-----CceEEEEec
Confidence 35666773 4679999999999999887752 1110 023333333 444433333311 333322211
Q ss_pred CCCHHHHHHhcccCCCCCCEEEEEcCC
Q 023179 161 KATGKILASELPKNGKKKCTVLYPASA 187 (286)
Q Consensus 161 ~~~~e~L~~~L~~~~~~~~rvL~~~g~ 187 (286)
..+.+.+.|.+....++++.+=...
T Consensus 77 --~~~~~~~~l~~~~~~~~~igve~~~ 101 (132)
T PF01321_consen 77 --PYEAIAEALKKLGPEGKRIGVEPDS 101 (132)
T ss_dssp --HHHHHHHHHHHHTTTTSEEEEETTT
T ss_pred --ccchHHHHHHHhCCCCCEEEEcCCc
Confidence 2566666666654444666555543
No 453
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=36.26 E-value=3.4e+02 Score=24.76 Aligned_cols=65 Identities=9% Similarity=0.021 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCC-cHHHHHHcCCCCEEEEeChHHHH
Q 023179 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-DQTVLKQALSIPVVAVASPSAVR 241 (286)
Q Consensus 177 ~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~-~~~~~~~~~~~d~IvftS~sav~ 241 (286)
.|+++.+++-......+...++.-|.+|..+.-|........ ...+-+-+...|+|++.-|.+-+
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~ 209 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEK 209 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCch
Confidence 677888886555556688999988887654433321111100 01112224678999998886544
No 454
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=36.25 E-value=96 Score=28.37 Aligned_cols=61 Identities=8% Similarity=0.095 Sum_probs=41.0
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
.|.+|++..|. -..+....+..|++++.+|+-. ....|.+.+.+.+. ....+.|++++|+-
T Consensus 104 ~gd~vlv~~P~--y~~~~~~~~~~g~~~~~i~~~~-~~~~d~~~l~~~~~-~~~~~~v~l~~p~N 164 (356)
T PRK04870 104 PGATVLAPEPG--FVMYRMSAKLAGLEFVGVPLTA-DFTLDLPAMLAAIA-EHRPALVFLAYPNN 164 (356)
T ss_pred CCCEEEECCCC--HHHHHHHHHHcCCEEEEecCCC-CCCCCHHHHHHHhh-cCCCCEEEEcCCCC
Confidence 36788888775 3455666777899999999742 22335566766662 24678888887654
No 455
>PRK15452 putative protease; Provisional
Probab=36.24 E-value=3.5e+02 Score=26.20 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=42.2
Q ss_pred CCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCHHHHHHHHHcCCCeEEeCCCCC
Q 023179 228 SIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETTASAAKRLGLKNVYYPTHPG 283 (286)
Q Consensus 228 ~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~~Ta~~l~~~G~~~v~~~~~ps 283 (286)
.+|+|++.++..+..+-+..+.... .+..+-+.-..+++.++++|+..++.+.+=+
T Consensus 89 gvDgvIV~d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELs 145 (443)
T PRK15452 89 KPDALIMSDPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELS 145 (443)
T ss_pred CCCEEEEcCHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCC
Confidence 6899999999999877776543221 2345566778999999999999888776543
No 456
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=36.10 E-value=99 Score=24.34 Aligned_cols=34 Identities=9% Similarity=0.183 Sum_probs=21.5
Q ss_pred CCCccEEEEeCHH--------HHHHHHHHHHHcCCCCcEEEEECh
Q 023179 100 DTIFDWIIITSPE--------AGSVFLEAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 100 ~~~~d~IvFTS~~--------av~~~~~~l~~~~~~~~~i~aVG~ 136 (286)
+.++|.|+|-||. .+..|++.+.. .+.+++++|-
T Consensus 48 ~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~---~~k~~avfgt 89 (140)
T TIGR01754 48 PENYDLVFLGTWTWERGRTPDEMKDFIAELGY---KPSNVAIFGT 89 (140)
T ss_pred hhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcc---cCCEEEEEEc
Confidence 4568999998873 35556655433 4566766663
No 457
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=35.68 E-value=1.2e+02 Score=26.85 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=26.8
Q ss_pred HHHHHhcccCCCCCCEEEEEcCCCCh----hHHHHHHHhCCCeeEEE
Q 023179 165 KILASELPKNGKKKCTVLYPASAKAS----NEIEEGLSNRGFEVVRL 207 (286)
Q Consensus 165 e~L~~~L~~~~~~~~rvL~~~g~~~~----~~L~~~L~~~G~~V~~~ 207 (286)
+.|-+.|.++ ..++++++++..-. +.+.+.|+..|++|..+
T Consensus 8 ~~l~~~l~~~--~~~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~ 52 (250)
T PF13685_consen 8 DKLPEILSEL--GLKKVLVVTDENTYKAAGEKVEESLKSAGIEVAVI 52 (250)
T ss_dssp GGHHHHHGGG--T-SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEE
T ss_pred HHHHHHHHhc--CCCcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3444455554 33799999888754 46778899999888744
No 458
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=35.60 E-value=54 Score=27.66 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=27.5
Q ss_pred CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 100 ~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
...++|+|||....++..+..+ ++....+|++....|
T Consensus 114 ~~g~~w~vfTaT~~lr~~~~rl------gl~~~~La~Ad~~rl 150 (179)
T PF12261_consen 114 QQGFEWVVFTATRQLRNLFRRL------GLPPTVLADADPSRL 150 (179)
T ss_pred HCCCCEEEEeCCHHHHHHHHHc------CCCceeccccCHhHc
Confidence 4689999999999998887755 455666666666666
No 459
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits
Probab=35.46 E-value=2.7e+02 Score=25.34 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=29.9
Q ss_pred hHHHHHHHHhCCCc--EEEeceEEeeeCCCchHHHHHHhcCCCccEE-EEeCHHHHHHHHHHHHHcCCC
Q 023179 62 NGKLIKALAKHRID--CLELPLIQHAQGPDTDRLSSVLNADTIFDWI-IITSPEAGSVFLEAWKEAGTP 127 (286)
Q Consensus 62 ~~~l~~~L~~~G~~--v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~I-vFTS~~av~~~~~~l~~~~~~ 127 (286)
...+.+.+++.|+. +...-.+......+...+...++... .+.| ++.+...+..+++.+.+.++.
T Consensus 153 ~~~l~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~l~~l~~~~-~~vivl~~~~~~~~~il~~a~~~g~~ 220 (362)
T cd06367 153 LDRVETTLEESFVGWEFQLVLTLDLSDDDGDARLLRQLKKLE-SRVILLYCSKEEAERIFEAAASLGLT 220 (362)
T ss_pred HHHHHHHHHhcccceeeeeeEEeccCCCcchHHHHHHHHhcC-CcEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 45566666667766 33222222211112333444443332 3333 444455556566666666553
No 460
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=35.34 E-value=2e+02 Score=24.72 Aligned_cols=71 Identities=15% Similarity=0.003 Sum_probs=43.0
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-Ccc--EEEEeCHHHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFD--WIIITSPEAGSVFLEAWK 122 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~-~~d--~IvFTS~~av~~~~~~l~ 122 (286)
.+.|+.+|||-... -+..+++.|.++|++++.+- ... .++..+.+.... ... ..=+++...++.+++.+.
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~---~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 80 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGIN---IVE---PTETIEQVTALGRRFLSLTADLRKIDGIPALLERAV 80 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEec---Ccc---hHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 57799999998775 46789999999999987432 111 122222332221 111 122367778887777664
Q ss_pred H
Q 023179 123 E 123 (286)
Q Consensus 123 ~ 123 (286)
+
T Consensus 81 ~ 81 (253)
T PRK08993 81 A 81 (253)
T ss_pred H
Confidence 4
No 461
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.03 E-value=1.2e+02 Score=25.79 Aligned_cols=35 Identities=17% Similarity=0.029 Sum_probs=19.2
Q ss_pred CccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEECh
Q 023179 102 IFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGA 136 (286)
Q Consensus 102 ~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~ 136 (286)
.+|+|+.++......++..+.+.+. +.+.+++.+.
T Consensus 183 ~~~ai~~~~d~~a~g~~~al~~~g~~iP~dv~vig~d~ 220 (270)
T cd06294 183 RPTAIVATDDLLALGVLKVLNELGLKVPEDLSIIGFNN 220 (270)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCCCcceEEEeeCC
Confidence 4666666665555555555655554 2444554444
No 462
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=35.03 E-value=2.7e+02 Score=23.25 Aligned_cols=87 Identities=13% Similarity=0.039 Sum_probs=45.1
Q ss_pred CCeEEEeCCCCc-------hHHHHHHHHhCCCcEEEeceEEeeeCC-C-chHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 023179 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGP-D-TDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (286)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~-~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~ 120 (286)
.++|++..+... ...+.+.++++|.++.....+...... + ...+.+.+....+.|.|+.++......+...
T Consensus 116 ~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~a~~~~~a 195 (264)
T cd06267 116 HRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIFAANDLMAIGALRA 195 (264)
T ss_pred CceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEecccchhhHHHHHHHHHhcCCCCcEEEEcCcHHHHHHHHH
Confidence 356666543322 234456666777533222222211111 1 1234455544445888888776666667777
Q ss_pred HHHcCCC---CcEEEEECh
Q 023179 121 WKEAGTP---NVRIGVVGA 136 (286)
Q Consensus 121 l~~~~~~---~~~i~aVG~ 136 (286)
+.+.+.. .+.+++.+.
T Consensus 196 l~~~g~~~~~~i~i~~~d~ 214 (264)
T cd06267 196 LRELGLRVPEDVSVVGFDD 214 (264)
T ss_pred HHHhCCCCCCceEEEeeCC
Confidence 7777653 455555553
No 463
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=34.92 E-value=3.3e+02 Score=24.96 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=0.0
Q ss_pred CCCCeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe-CHHHHHHHHHHH
Q 023179 48 NSNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-SPEAGSVFLEAW 121 (286)
Q Consensus 48 l~g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT-S~~av~~~~~~l 121 (286)
...++|.+...... ...+.+.+++.|+++.....+..........+.+.. ....|.|++. .......|++.+
T Consensus 138 ~~~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~--~~~pd~V~~~~~~~~~~~~~~~~ 215 (351)
T cd06334 138 LKGKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIR--RSGPDYVILWGWGVMNPVAIKEA 215 (351)
T ss_pred CCCCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHH--HcCCCEEEEecccchHHHHHHHH
Q ss_pred HHcCCCCcEEEEEChhhHHHHHHhhhccCCC
Q 023179 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCS 152 (286)
Q Consensus 122 ~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G 152 (286)
.+.+++..-+..-+-.....++.. |
T Consensus 216 ~~~G~~~~~~~~~~~~~~~~~~~~------g 240 (351)
T cd06334 216 KRVGLDDKFIGNWWSGDEEDVKPA------G 240 (351)
T ss_pred HHcCCCceEEEeeccCcHHHHHHh------h
No 464
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=34.80 E-value=2.2e+02 Score=22.91 Aligned_cols=102 Identities=15% Similarity=0.169 Sum_probs=63.4
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEE-EECh
Q 023179 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIG-VVGA 136 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~-aVG~ 136 (286)
.+.+.+.|++.|++|+.+-.....+ .|+. .+-..+ .-+.+|.-|+...+++-..+.. ...++++.+ |--+
T Consensus 14 K~~i~~~L~~~g~eV~D~G~~~~~~-~dy~~~a~~va~~V-~~~~~d~GIliCgtGiG~~iaA---NK~~GIrAa~~~d~ 88 (140)
T PF02502_consen 14 KEAIKEYLEEKGYEVIDFGTYSEDS-VDYPDFAEKVAEAV-ASGEADRGILICGTGIGMSIAA---NKVPGIRAALCSDP 88 (140)
T ss_dssp HHHHHHHHHHTTEEEEEESESSTST---HHHHHHHHHHHH-HTTSSSEEEEEESSSHHHHHHH---HTSTT--EEE-SSH
T ss_pred HHHHHHHHHHCCCEEEEeCCCCCCC-CCHHHHHHHHHHHH-HcccCCeEEEEcCCChhhhhHh---hcCCCEEEEeeCCH
Confidence 4678899999999999999888652 2332 333344 2356666666666666554442 234666664 6678
Q ss_pred hhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 137 GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
.+++..+++- +-++...+.+.+++.++..|.+
T Consensus 89 ~~A~~ar~hN-----daNVL~lG~~~~~~~~a~~i~~ 120 (140)
T PF02502_consen 89 YSAKMAREHN-----DANVLCLGARVIGEELAKEIVD 120 (140)
T ss_dssp HHHHHHHHTT-------SEEEEETTTSHHHHHHHHHH
T ss_pred HHHHHHHHhc-----CCcEEEechhhccHHHHHHHHH
Confidence 8888888872 4455556777777777766654
No 465
>PRK13556 azoreductase; Provisional
Probab=34.79 E-value=1e+02 Score=26.11 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=19.4
Q ss_pred cCCCCEEEEeCh-------HHHHHHHHHhcc
Q 023179 226 ALSIPVVAVASP-------SAVRSWVNLISD 249 (286)
Q Consensus 226 ~~~~d~IvftS~-------sav~~~~~~~~~ 249 (286)
+...|.|||.+| ..+|.|++.+-.
T Consensus 87 l~~AD~iVi~~P~yn~~~Pa~LK~~iD~v~~ 117 (208)
T PRK13556 87 FLEADKVVFAFPLWNFTIPAVLHTYIDYLNR 117 (208)
T ss_pred HHHCCEEEEeccccccCCcHHHHHHHHHHhc
Confidence 467899999987 678999987664
No 466
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=34.64 E-value=2.5e+02 Score=26.96 Aligned_cols=144 Identities=10% Similarity=0.084 Sum_probs=76.0
Q ss_pred chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHH--HHHHHHHHcCCC-------C---
Q 023179 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS--VFLEAWKEAGTP-------N--- 128 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~--~~~~~l~~~~~~-------~--- 128 (286)
....+.+.|++.|++++..|.... ...+..+.-+.++. .+.|.||+.-++-.. .+...+...+.+ .
T Consensus 24 ~~~~~~~~l~~~~~~vv~~~~~~~-~~~~~~~~~~~~~~-~~~d~ii~~~~tf~~~~~~~~~~~~~~~Pvll~a~~~~~~ 101 (452)
T cd00578 24 YAREVADLLNELPVEVVDKPEVTG-TPDEARKAAEEFNE-ANCDGLIVWMHTFGPAKMWIAGLSELRKPVLLLATQFNRE 101 (452)
T ss_pred HHHHHHHHHhcCCceEEecCcccC-CHHHHHHHHHHHhh-cCCcEEEEcccccccHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 457888888888999999986641 11122222234423 478998874333221 122222222110 1
Q ss_pred ------cEEEEEC-hhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC--------CCCCCEEEEEcCCCCh---
Q 023179 129 ------VRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--------GKKKCTVLYPASAKAS--- 190 (286)
Q Consensus 129 ------~~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~--------~~~~~rvL~~~g~~~~--- 190 (286)
..-...| ..+...|++. |++..++-.....+...+.|.++ ..++.|+..+.+.-..
T Consensus 102 ~~~~~~~~~s~~g~~~~~~~l~r~------gi~~~~v~g~~~d~~~~~~i~~~~raa~~~~~lr~~rig~iG~~~~~~~~ 175 (452)
T cd00578 102 IPDFMNLNQSACGLREFGNILARL------GIPFKVVYGHWKDEDVLRKIESWARAAAAVATLRGLRVGRFGDRMRGMAV 175 (452)
T ss_pred CCchhhhhcchhhhHHHHHHHHHc------CCceeEEECCCCCHHHHHHHHHHHHHHHHHHHhhcCceEEECCCcCCcEE
Confidence 0112222 2356777887 98876542221223343433332 1266889888765321
Q ss_pred --hHHHHHHHhCCCeeEEEEeeee
Q 023179 191 --NEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 191 --~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
.+..+.++.-|++|..+...+-
T Consensus 176 ~~~d~~~~~~~fG~~v~~i~~~el 199 (452)
T cd00578 176 TEGDKVLAQIKFGVSVEYLEVGEL 199 (452)
T ss_pred ecCCHHHHHHhhCeEEEEEcHHHH
Confidence 1222445667999988887654
No 467
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=34.51 E-value=1.7e+02 Score=26.06 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=13.8
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEE
Q 023179 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (286)
Q Consensus 177 ~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~ 208 (286)
+|.+|++.+..... +...+...|..+..++
T Consensus 98 ~gd~Vlv~~~~h~s--~~~~~~~~g~~~~~v~ 127 (294)
T cd00615 98 PGDKILIDRNCHKS--VINGLVLSGAVPVYLK 127 (294)
T ss_pred CCCEEEEeCCchHH--HHHHHHHCCCEEEEec
Confidence 34555555543322 3344445555544443
No 468
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=34.50 E-value=1.2e+02 Score=25.97 Aligned_cols=40 Identities=18% Similarity=0.065 Sum_probs=23.9
Q ss_pred CCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChhhHH
Q 023179 101 TIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAGTAS 140 (286)
Q Consensus 101 ~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~Ta~ 140 (286)
..+|+|+.++-.-+..+++.+.+.+. +++.+++.+.....
T Consensus 171 ~~~~ai~~~~d~~a~~~~~~l~~~g~~vp~dv~vvg~d~~~~~ 213 (261)
T cd06272 171 DLPTAIICGSYDIALGVLSALNKQGISIPEDIEIISYDNIPQM 213 (261)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhCCCCCCceEEEeeCChhHH
Confidence 34677777766655556666666654 35666666665433
No 469
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=34.49 E-value=4.1e+02 Score=25.23 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=50.1
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHHc
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l~~~ 124 (286)
.+++|++.--.- ...+.+.|+++|+++..+|... +.+ .+.. .++|.|+++ +|.......+.+++.
T Consensus 191 ~~~~I~viD~g~-k~ni~~~L~~~G~~v~vvp~~~-----~~~----~i~~-~~~dgIilSgGPg~p~~~~~~i~~i~~~ 259 (382)
T CHL00197 191 YQLKIIVIDFGV-KYNILRRLKSFGCSITVVPATS-----PYQ----DILS-YQPDGILLSNGPGDPSAIHYGIKTVKKL 259 (382)
T ss_pred CCCEEEEEECCc-HHHHHHHHHHCCCeEEEEcCCC-----CHH----HHhc-cCCCEEEEcCCCCChhHHHHHHHHHHHH
Confidence 368888887643 3558899999999998887532 112 1212 368999996 333444444444332
Q ss_pred CCCCcEEEEEChhhHHHHHHh
Q 023179 125 GTPNVRIGVVGAGTASIFEEV 145 (286)
Q Consensus 125 ~~~~~~i~aVG~~Ta~~L~~~ 145 (286)
-..+.+++-|--+-.-....+
T Consensus 260 ~~~~~PilGIClGhQlLa~a~ 280 (382)
T CHL00197 260 LKYNIPIFGICMGHQILSLAL 280 (382)
T ss_pred HhCCCCEEEEcHHHHHHHHHh
Confidence 113677765544443444444
No 470
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.49 E-value=88 Score=26.93 Aligned_cols=43 Identities=21% Similarity=0.184 Sum_probs=24.7
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEC
Q 023179 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVG 135 (286)
Q Consensus 93 l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG 135 (286)
+.+.+.....+|+|+.+|-..+..+++.+.+.+. +++.+++.+
T Consensus 167 ~~~~l~~~~~~~ai~~~~d~~a~g~~~~l~~~g~~ip~dv~iig~d 212 (269)
T cd06281 167 TRALLALPDRPTAIIAGGTQVLVGVLRALREAGLRIPRDLSVISIG 212 (269)
T ss_pred HHHHHcCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCcceeEEEec
Confidence 3344433345677777666665566666666654 245555555
No 471
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=34.48 E-value=1e+02 Score=25.39 Aligned_cols=57 Identities=16% Similarity=0.053 Sum_probs=36.9
Q ss_pred CCCCCCeEEEe-CCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 023179 46 ASNSNPKVVVT-RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 46 ~~l~g~~VLit-R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
-++.|++|+|. |+..-+..++..|..+|+.|..+.-.+ ..+.+.+ ...|.||-....
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-------~~l~~~~---~~ADIVVsa~G~ 89 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-------KNLQEIT---RRADIVVSAVGK 89 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-------SSHHHHH---TTSSEEEE-SSS
T ss_pred CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-------Cccccee---eeccEEeeeecc
Confidence 37899998887 666678999999999999987654332 2344444 467877765543
No 472
>PRK05723 flavodoxin; Provisional
Probab=34.36 E-value=1.8e+02 Score=23.54 Aligned_cols=65 Identities=12% Similarity=0.039 Sum_probs=33.1
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHHc---CCCCcEE
Q 023179 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEA---GTPNVRI 131 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~-------~av~~~~~~l~~~---~~~~~~i 131 (286)
+..+++.|.+.|+++...+.... ..+. ....-..|++||. .....|.+.+.+. .+.++++
T Consensus 18 A~~la~~l~~~g~~~~~~~~~~~------~~~~----~~~~~~li~~~sT~G~Ge~Pd~~~~f~~~L~~~~~~~l~~~~~ 87 (151)
T PRK05723 18 ARHAESLLKAAGFEAWHNPRASL------QDLQ----AFAPEALLAVTSTTGMGELPDNLMPLYSAIRDQLPAAWRGLPG 87 (151)
T ss_pred HHHHHHHHHHCCCceeecCcCCH------hHHH----hCCCCeEEEEECCCCCCCCchhHHHHHHHHHhcCccCCCCCEE
Confidence 34566666677888865443111 1121 1211134556664 3445577766653 3456666
Q ss_pred EEECh
Q 023179 132 GVVGA 136 (286)
Q Consensus 132 ~aVG~ 136 (286)
++.|=
T Consensus 88 aVfGL 92 (151)
T PRK05723 88 AVIAL 92 (151)
T ss_pred EEEeE
Confidence 55543
No 473
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=34.35 E-value=1.9e+02 Score=28.28 Aligned_cols=86 Identities=13% Similarity=0.014 Sum_probs=47.0
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCC-----CChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEE-e
Q 023179 164 GKILASELPKNGKKKCTVLYPASA-----KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-A 235 (286)
Q Consensus 164 ~e~L~~~L~~~~~~~~rvL~~~g~-----~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~Ivf-t 235 (286)
+..+++.+.... -++|.++..+ ...+.+.+.+++.|++|.....+............+..+ .+.++|++ .
T Consensus 175 ~~Ai~~l~~~f~--wk~VaiI~~dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~klk~~~a~vVvl~~ 252 (510)
T cd06364 175 ATAMADIIEYFR--WNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQNSTAKVIVVFS 252 (510)
T ss_pred HHHHHHHHHHcC--CeEEEEEEecCcchHHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 456665444332 2566555322 235677889999999887665554322111111222222 36777666 5
Q ss_pred ChHHHHHHHHHhcccc
Q 023179 236 SPSAVRSWVNLISDTE 251 (286)
Q Consensus 236 S~sav~~~~~~~~~~~ 251 (286)
+...+..++..+.+.+
T Consensus 253 ~~~~~~~ll~qa~~~g 268 (510)
T cd06364 253 SGPDLEPLIKEIVRRN 268 (510)
T ss_pred CcHHHHHHHHHHHHhC
Confidence 5566777777666543
No 474
>PRK08912 hypothetical protein; Provisional
Probab=34.35 E-value=93 Score=28.90 Aligned_cols=59 Identities=8% Similarity=-0.002 Sum_probs=38.4
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
|.+|++..|.- ..+...++..|+++..+|+-......+.+.+.+.+. ...+.|++++|+
T Consensus 111 gd~Vlv~~p~y--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~v~l~~p~ 169 (387)
T PRK08912 111 GDEVVLFQPLY--DAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFS--PRTKAVLLNNPL 169 (387)
T ss_pred CCEEEEeCCCc--hhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhC--ccceEEEEeCCC
Confidence 77899988753 445566778899999888732222234466666552 356788877643
No 475
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=34.22 E-value=1.1e+02 Score=28.46 Aligned_cols=61 Identities=8% Similarity=0.028 Sum_probs=39.5
Q ss_pred CC-eEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH
Q 023179 50 NP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE 112 (286)
Q Consensus 50 g~-~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~ 112 (286)
|. +|++..|.= ..+...++..|++++.+|+-......|.+.+++.+.. ....+.|++++|+
T Consensus 115 g~~~Vlv~~P~y--~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P~ 178 (374)
T PRK02610 115 GEGSILVAEPTF--SMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHPN 178 (374)
T ss_pred CCCeEEEcCCCh--HHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCCC
Confidence 43 688888752 4555666778999998886322223455667666632 1467889988874
No 476
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=34.15 E-value=1.6e+02 Score=24.05 Aligned_cols=74 Identities=14% Similarity=0.262 Sum_probs=39.9
Q ss_pred EEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH--------HHHHHHHHHHHc
Q 023179 53 VVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE--------AGSVFLEAWKEA 124 (286)
Q Consensus 53 VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~--------av~~~~~~l~~~ 124 (286)
|++.-..+....+++.+.+. +....+.++..... . . ..+..||.|||-||. .+..|++.+...
T Consensus 4 IiY~S~tGnTe~vA~~Ia~~-l~~~~~~i~~~~~~---~-~----~~l~~~d~ii~gspty~~g~~p~~~~~fl~~l~~~ 74 (167)
T TIGR01752 4 IFYGTDTGNTEGIAEKIQKE-LGEDDVDVFNIAKA---S-K----EDLNAYDKLILGTPTWGVGELQEDWEDFLPTLEEL 74 (167)
T ss_pred EEEECCCChHHHHHHHHHHH-hCCCceEEEEcccC---C-H----hHHhhCCEEEEEecCCCCCcCcHHHHHHHHHhhcC
Confidence 34444555667777777653 22111222222211 1 0 124678999998865 234456655444
Q ss_pred CCCCcEEEEEC
Q 023179 125 GTPNVRIGVVG 135 (286)
Q Consensus 125 ~~~~~~i~aVG 135 (286)
.+.+.+++.+|
T Consensus 75 ~l~gk~v~~fg 85 (167)
T TIGR01752 75 DFTGKTVALFG 85 (167)
T ss_pred CCCCCEEEEEe
Confidence 45678888877
No 477
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=34.14 E-value=1.4e+02 Score=23.39 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=25.6
Q ss_pred CCEEEEEcCCCChhHHHHHHHhCCCeeEEEE
Q 023179 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (286)
Q Consensus 178 ~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~ 208 (286)
-..++++.|+..-..+.+.|++.|.+|..+.
T Consensus 100 ~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~ 130 (149)
T cd06167 100 IDTIVLVSGDSDFVPLVERLRELGKRVIVVG 130 (149)
T ss_pred CCEEEEEECCccHHHHHHHHHHcCCEEEEEc
Confidence 4689999999988888999999998774443
No 478
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=34.11 E-value=3.8e+02 Score=24.79 Aligned_cols=207 Identities=9% Similarity=0.070 Sum_probs=108.4
Q ss_pred CCCCCCeEEEeCCC--CchHHHH------HHHHhCCCcE--EEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHH
Q 023179 46 ASNSNPKVVVTRER--GKNGKLI------KALAKHRIDC--LELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (286)
Q Consensus 46 ~~l~g~~VLitR~~--~~~~~l~------~~L~~~G~~v--~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~ 115 (286)
..+.|+.|+|..+. +-++.+. ..|++.|+.- ..+|.+-.-.. | ... ..- .+-+++
T Consensus 64 ~~vrg~~V~ivqs~~~p~nd~l~eLll~~~alr~~ga~ri~~ViPYl~YaRQ-D-----r~~---~~~------e~isak 128 (330)
T PRK02812 64 ESIRGCDVYLIQPTCAPVNDHLMELLIMVDACRRASARQITAVIPYYGYARA-D-----RKT---AGR------ESITAK 128 (330)
T ss_pred CCCCCCEEEEECCCCCCccHHHHHHHHHHHHHHHhCCceEEEEEeccccccc-c-----ccc---CCC------CCchHH
Confidence 46679999888773 3355554 4455788763 33454443221 1 111 111 123555
Q ss_pred HHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHH
Q 023179 116 VFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEE 195 (286)
Q Consensus 116 ~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~ 195 (286)
.+.+.+...|.+ +++++-.++.+ ++.+| .+.++.. .....++++|.+.. ..+++++.-+.+...+..
T Consensus 129 ~vA~lL~~~g~d--~vitvDlH~~~-~~~fF-----~ipv~nl---~~~~~l~~~i~~~~--~~~~vvVsPD~gg~~ra~ 195 (330)
T PRK02812 129 LVANLITKAGAD--RVLAMDLHSAQ-IQGYF-----DIPCDHV---YGSPVLLDYLASKN--LEDIVVVSPDVGGVARAR 195 (330)
T ss_pred HHHHHHHhcCCC--EEEEEECCchH-HcCcc-----CCCceee---eChHHHHHHHHhcC--CCCeEEEEECCccHHHHH
Confidence 666666555543 56667666644 34443 3333222 23455666665432 245667766666666566
Q ss_pred HHHhC--CCeeEEEEeeeeecCCCCcH--HHHHHcCCCCEEE----EeChHHHHHHHHHhccccCCCceEEE----eCHH
Q 023179 196 GLSNR--GFEVVRLNTYTTEPVHHVDQ--TVLKQALSIPVVA----VASPSAVRSWVNLISDTEQWSNSVAC----IGET 263 (286)
Q Consensus 196 ~L~~~--G~~V~~~~vY~~~~~~~~~~--~~~~~~~~~d~Iv----ftS~sav~~~~~~~~~~~~~~~~iv~----IG~~ 263 (286)
.+.+. |..+..+ +.+........ ........-++|+ ++++.++....+.+++.+...+.++| .++.
T Consensus 196 ~~A~~L~~~~~~~~--~k~R~~~~~~~~~~~~~~v~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~tH~v~s~~ 273 (330)
T PRK02812 196 AFAKKLNDAPLAII--DKRRQAHNVAEVLNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATHAVFSPP 273 (330)
T ss_pred HHHHHhCCCCEEEE--EeeccCCceeeeEeccccCCCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEEEcccCChH
Confidence 66554 3344333 22221111100 0000122333443 58888888888888876544455555 3555
Q ss_pred HHHHHHHcCCCeEEeCCCC
Q 023179 264 TASAAKRLGLKNVYYPTHP 282 (286)
Q Consensus 264 Ta~~l~~~G~~~v~~~~~p 282 (286)
..+.+++.++..+++.+.+
T Consensus 274 a~~~l~~~~id~iv~tnti 292 (330)
T PRK02812 274 AIERLSSGLFEEVIVTNTI 292 (330)
T ss_pred HHHHHhhCCCCEEEEeCCC
Confidence 6666776788888776654
No 479
>PRK07856 short chain dehydrogenase; Provisional
Probab=34.07 E-value=2e+02 Score=24.62 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=25.7
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEE
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~ 78 (286)
.+.|+++|||-... -+..+++.|.++|.+++.
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~ 35 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVV 35 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 46799999998765 367899999999987754
No 480
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=33.94 E-value=1.1e+02 Score=25.16 Aligned_cols=48 Identities=21% Similarity=0.161 Sum_probs=33.1
Q ss_pred HHHHhcccCCCCCCEEEEE-cCCCChhHHHHHHHhCCCeeEEEEeeeee
Q 023179 166 ILASELPKNGKKKCTVLYP-ASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 166 ~L~~~L~~~~~~~~rvL~~-~g~~~~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
.+++.+.+...+|+++++. .+..+...+.+.|++.|++++.+.-|..-
T Consensus 121 ~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~ 169 (179)
T TIGR00537 121 RFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYEIVAERGLF 169 (179)
T ss_pred HHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEEEEEEeecC
Confidence 3444444444456676665 44444778899999999999988888763
No 481
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=33.75 E-value=3.4e+02 Score=24.34 Aligned_cols=105 Identities=10% Similarity=0.006 Sum_probs=0.0
Q ss_pred HHHHHHhcccCCCCCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEe-
Q 023179 164 GKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVA- 235 (286)
Q Consensus 164 ~e~L~~~L~~~~~~~~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~Ivft- 235 (286)
...+++.+.+.. ..+++.++..+.. ...+.+.|++.|.+|.....|... ..+....+..+ .+.|+|++.
T Consensus 122 ~~~~~~~~~~~~-~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~--~~d~~~~v~~l~~~~~d~v~~~~ 198 (340)
T cd06349 122 APLLADYAVKDL-GFKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYVPG--EKDFRPTITRLRDANPDAIILIS 198 (340)
T ss_pred HHHHHHHHHHHc-CCcEEEEEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeCCC--CCcHHHHHHHHHhcCCCEEEEcc
Q ss_pred ChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcC
Q 023179 236 SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLG 272 (286)
Q Consensus 236 S~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G 272 (286)
.+..+..|+..+.+.+. +.+++..+......+-+.+
T Consensus 199 ~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~ 234 (340)
T cd06349 199 YYNDGAPIARQARAVGL-DIPVVASSSVYSPKFIELG 234 (340)
T ss_pred ccchHHHHHHHHHHcCC-CCcEEccCCcCCHHHHHHh
No 482
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=33.73 E-value=2.4e+02 Score=25.88 Aligned_cols=39 Identities=26% Similarity=0.238 Sum_probs=24.4
Q ss_pred CHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeE
Q 023179 163 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVV 205 (286)
Q Consensus 163 ~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~ 205 (286)
++-.++..|.+....+++|.++.+.. |.+.|.+.|++..
T Consensus 91 sa~~~a~ylk~~~~~~k~Vyvig~~g----i~~eL~~aG~~~~ 129 (306)
T KOG2882|consen 91 SAYAIADYLKKRKPFGKKVYVIGEEG----IREELDEAGFEYF 129 (306)
T ss_pred hHHHHHHHHHHhCcCCCeEEEecchh----hhHHHHHcCceee
Confidence 34556666755444567888887766 4555777786543
No 483
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=33.52 E-value=1e+02 Score=26.89 Aligned_cols=10 Identities=20% Similarity=-0.004 Sum_probs=4.3
Q ss_pred EEEEEChhhH
Q 023179 130 RIGVVGAGTA 139 (286)
Q Consensus 130 ~i~aVG~~Ta 139 (286)
-|+|.+...+
T Consensus 193 ai~~~nd~~A 202 (280)
T cd06303 193 FIYACSTDIA 202 (280)
T ss_pred EEEECCcHHH
Confidence 3444444433
No 484
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=33.38 E-value=3.5e+02 Score=29.28 Aligned_cols=120 Identities=13% Similarity=0.145 Sum_probs=70.8
Q ss_pred cEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEE
Q 023179 129 VRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (286)
Q Consensus 129 ~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~ 208 (286)
.-+-.||..|...-+-. .|=.+++..+ .+.++ .+. .++++|++.|..|.-.|.+.|++.|.+|..+.
T Consensus 857 ~i~rvVGkgT~~Ls~l~-----~Gd~v~v~GP--LG~pF--~i~----~~k~vLLVgGGVGiApLak~Lk~~G~~V~~~~ 923 (1028)
T PRK06567 857 FIVFEVGKSTSLCKTLS-----ENEKVVLMGP--TGSPL--EIP----QNKKIVIVDFEVGNIGLLKVLKENNNEVIFVT 923 (1028)
T ss_pred EEEEEEChHHHHHhcCC-----CCCEEEEEcc--cCCCC--CCC----CCCeEEEEEccccHHHHHHHHHHCCCeEEEEE
Confidence 33557999997665432 1544555432 22222 121 23689999999998889999999999998777
Q ss_pred eeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhcccc-CCC-ceEEEeCHHHHHHHHH
Q 023179 209 TYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTE-QWS-NSVACIGETTASAAKR 270 (286)
Q Consensus 209 vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~-~~~-~~iv~IG~~Ta~~l~~ 270 (286)
|-. . .. ..+.++|.|+.--|...-.++..+.+.. ..+ ..++++.+.....++.
T Consensus 924 -~~d----~-~~---~~l~~vD~vi~iGs~~mm~~~~~~~~~~~~~~~~~i~svns~M~c~m~g 978 (1028)
T PRK06567 924 -YPD----I-KI---RKLVSVDIVIINASPEIIEELQSLKNEIFGENTEIIVSVNSSMQCMMKG 978 (1028)
T ss_pred -cCC----C-Cc---ccchhccEEEEeCCHHHHHHHHHHHhhhccCCCcEEEecCcHHHHHhhh
Confidence 731 1 10 1245778776665555555555444311 112 3466666666655444
No 485
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.33 E-value=1.5e+02 Score=25.27 Aligned_cols=25 Identities=16% Similarity=-0.003 Sum_probs=12.9
Q ss_pred CccEEEEeCHHHHHHHHHHHHHcCC
Q 023179 102 IFDWIIITSPEAGSVFLEAWKEAGT 126 (286)
Q Consensus 102 ~~d~IvFTS~~av~~~~~~l~~~~~ 126 (286)
.+|+|+.++..-+..+++.+.+.+.
T Consensus 176 ~~~aii~~~~~~a~~~~~~l~~~g~ 200 (265)
T cd06290 176 DFTAIFAANDQTAYGARLALYRRGL 200 (265)
T ss_pred CCCEEEEcCcHHHHHHHHHHHHcCC
Confidence 3455555555544445555555443
No 486
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=33.25 E-value=1.6e+02 Score=25.28 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=27.4
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChh
Q 023179 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (286)
Q Consensus 93 l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~ 137 (286)
+.+.+.....+|.|+++|-..+..+++.+.+.+. +.+.+++.+..
T Consensus 174 ~~~~l~~~~~~~av~~~~d~~a~g~~~al~~~g~~~p~dv~vvg~d~~ 221 (273)
T cd01541 174 IKEILKRPERPTAIVCYNDEIALRVIDLLKELGLKIPEDISVVGFDDS 221 (273)
T ss_pred HHHHHcCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCcEEEEEcCCc
Confidence 3344433345788877777777777777777664 35566666443
No 487
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.20 E-value=3.3e+02 Score=23.73 Aligned_cols=33 Identities=21% Similarity=0.043 Sum_probs=25.0
Q ss_pred CeEEEeCCCC--chHHHHHHHHhCCCcEEEeceEE
Q 023179 51 PKVVVTRERG--KNGKLIKALAKHRIDCLELPLIQ 83 (286)
Q Consensus 51 ~~VLitR~~~--~~~~l~~~L~~~G~~v~~~P~~~ 83 (286)
+-|-|.|... +..++.+.|.+.|+.++++++-.
T Consensus 16 ~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~t 50 (222)
T PRK07114 16 GMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRG 50 (222)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4455666554 56788999999999999998844
No 488
>PLN02409 serine--glyoxylate aminotransaminase
Probab=33.14 E-value=2.6e+02 Score=26.27 Aligned_cols=33 Identities=12% Similarity=-0.003 Sum_probs=16.5
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEe
Q 023179 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 177 ~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~v 209 (286)
+|.+||+.....-...+.+.++..|+++..++.
T Consensus 83 ~Gd~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~ 115 (401)
T PLN02409 83 PGDKVVSFRIGQFSLLWIDQMQRLNFDVDVVES 115 (401)
T ss_pred CCCEEEEeCCCchhHHHHHHHHHcCCceEEEEC
Confidence 455666665332222234455555666655553
No 489
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=33.12 E-value=2.2e+02 Score=21.75 Aligned_cols=76 Identities=20% Similarity=0.088 Sum_probs=45.4
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH----HHHHHHHHHHcCCCCcEEEEEChh
Q 023179 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA----GSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a----v~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
...++..|+++|+.+..+... ..+...+.+....++|.|.|++... +..+.+.+++.+ ++.++++-|..
T Consensus 5 l~~~aa~l~~~g~~v~~~~~~------~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~-p~~~iv~GG~~ 77 (127)
T cd02068 5 LAYLAAVLEDAGFIVAEHDVL------SADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVL-PNVIVVVGGPH 77 (127)
T ss_pred HHHHHHHHHHCCCeeeecCCC------CHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHHC-CCCEEEECCcc
Confidence 456788899999777665532 1122233342226899999987543 333445555443 46888888877
Q ss_pred hHHHHHH
Q 023179 138 TASIFEE 144 (286)
Q Consensus 138 Ta~~L~~ 144 (286)
....-+.
T Consensus 78 ~t~~p~~ 84 (127)
T cd02068 78 ATFFPEE 84 (127)
T ss_pred hhhCHHH
Confidence 6644443
No 490
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=33.07 E-value=4e+02 Score=25.31 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcEE-EeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEE-EC-hhhH
Q 023179 63 GKLIKALAKHRIDCL-ELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGV-VG-AGTA 139 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~-~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~a-VG-~~Ta 139 (286)
.++.+.|++.|+++. .+|-..+...+ ....--.++..++.+....-..-++.+.+-..+-. +| +.|.
T Consensus 168 ~elk~lL~~~Gi~v~~~lpd~~~~e~~----------~~~~~~~~~~~~~~~~~~A~~Le~~~GiP~~~~~~PiGi~~T~ 237 (407)
T TIGR01279 168 DQLRLELKQLGIPVVGFLPASHFTELP----------VIGPGTVVAPLQPYLSDTATTLRRERGAKVLSAPFPFGPDGTR 237 (407)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCcchhh----------hcCCCeEEEEechHHHHHHHHHHHHhCCccccCCCCcCHHHHH
Q ss_pred HHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCC--CCCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 023179 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~--~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~ 207 (286)
+.|++..+.- |..+.-. ..-...+.+.|..... .|+|+++..+..-.-.+...|.+.|+++..+
T Consensus 238 ~~l~~la~~~--g~~~~~~--~~e~~~~~~~l~~~~~~l~Gkrv~i~gd~~~~~~l~~~L~elGm~~v~~ 303 (407)
T TIGR01279 238 RFLEAIAAEF--GIEVDKL--SEREAQAWRALEPHTQLLRGKKIFFFGDNLLELPLARFLKRCGMEVVEC 303 (407)
T ss_pred HHHHHHHHHh--CcCHHHH--HHHHHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHCCCEEEEe
No 491
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=33.06 E-value=1.4e+02 Score=26.80 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=39.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChh
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~ 137 (286)
-+.+.|+++|.++............+ .+.+.+.++.-..+|+|++++-..+..+++.+.+.+. +++.+++.+..
T Consensus 199 Gf~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~a~g~~~al~~~g~~ip~dv~vvgfD~~ 277 (341)
T PRK10703 199 GFMKAMEEANIKVPEEWIVQGDFEPESGYEAMQQILSQKHRPTAVFCGGDIMAMGAICAADEMGLRVPQDISVIGYDNV 277 (341)
T ss_pred HHHHHHHHcCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEECCC
Confidence 44556777776554322221111111 1233344433345788888877776677777777664 35566666554
No 492
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=33.00 E-value=1.4e+02 Score=24.87 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred EEEEEcCCCC--------hhHHHHHHHhCCCeeEEE-----Eeeeee----cCCCCcHHHHHHcCCCCEEEEeChH----
Q 023179 180 TVLYPASAKA--------SNEIEEGLSNRGFEVVRL-----NTYTTE----PVHHVDQTVLKQALSIPVVAVASPS---- 238 (286)
Q Consensus 180 rvL~~~g~~~--------~~~L~~~L~~~G~~V~~~-----~vY~~~----~~~~~~~~~~~~~~~~d~IvftS~s---- 238 (286)
|++++.|... -..+.+.|...+...... +.|.-. ..+.......+.+...|+++|.+|.
T Consensus 2 kil~i~GS~r~~S~~~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeYn~s 81 (184)
T COG0431 2 KILIISGSLRRGSFNRALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEYNGS 81 (184)
T ss_pred eEEEEeccCcccchHHHHHHHHHHhhcccCceEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCccCCC
Q ss_pred ---HHHHHHHHhccccCCCceEEEeC
Q 023179 239 ---AVRSWVNLISDTEQWSNSVACIG 261 (286)
Q Consensus 239 ---av~~~~~~~~~~~~~~~~iv~IG 261 (286)
++|+.++.+......+.++..++
T Consensus 82 ~pg~lKnaiD~l~~~~~~~Kpv~~~~ 107 (184)
T COG0431 82 YPGALKNAIDWLSREALGGKPVLLLG 107 (184)
T ss_pred CCHHHHHHHHhCCHhHhCCCcEEEEe
No 493
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=32.94 E-value=94 Score=26.42 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=0.0
Q ss_pred eeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEE
Q 023179 155 VAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAV 234 (286)
Q Consensus 155 ~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~Ivf 234 (286)
.++.+.+.-+..+++.|.. .+-+|..+.-+. .....+.|+..|+++.....+ ..+.+.+.+..+|.|++
T Consensus 2 ~V~GatG~~G~~v~~~L~~---~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~~-------~~~~l~~al~g~d~v~~ 70 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLS---AGFSVRALVRDP-SSDRAQQLQALGAEVVEADYD-------DPESLVAALKGVDAVFS 70 (233)
T ss_dssp EEETTTSHHHHHHHHHHHH---TTGCEEEEESSS-HHHHHHHHHHTTTEEEES-TT--------HHHHHHHHTTCSEEEE
T ss_pred EEECCccHHHHHHHHHHHh---CCCCcEEEEecc-chhhhhhhhcccceEeecccC-------CHHHHHHHHcCCceEEe
Q ss_pred eChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeEEeCC
Q 023179 235 ASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPT 280 (286)
Q Consensus 235 tS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v~~~~ 280 (286)
..+.....-.+... +..+++++.|++.++.++
T Consensus 71 ~~~~~~~~~~~~~~--------------~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 71 VTPPSHPSELEQQK--------------NLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp ESSCSCCCHHHHHH--------------HHHHHHHHHT-SEEEESE
T ss_pred ecCcchhhhhhhhh--------------hHHHhhhccccceEEEEE
No 494
>PRK12744 short chain dehydrogenase; Provisional
Probab=32.83 E-value=2.6e+02 Score=23.91 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=43.0
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCC-CchHHHHHHhcCC-CccEE--EEeCHHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGP-DTDRLSSVLNADT-IFDWI--IITSPEAGSVFLEAW 121 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~-~~~~l~~~l~~~~-~~d~I--vFTS~~av~~~~~~l 121 (286)
.+.+++||||-... -+..+++.|.+.|.+++.+- .+..... ..+.+.+.++..+ .+.++ =++++.+++.+++..
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 83 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIH-YNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDA 83 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEe-cCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHH
Confidence 46789999997654 46789999999999865431 1111111 1122222232211 22222 137888888887766
Q ss_pred HH
Q 023179 122 KE 123 (286)
Q Consensus 122 ~~ 123 (286)
.+
T Consensus 84 ~~ 85 (257)
T PRK12744 84 KA 85 (257)
T ss_pred HH
Confidence 54
No 495
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=32.83 E-value=2.9e+02 Score=23.44 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=12.1
Q ss_pred CccEEEEeCH-HHHHHHHHHHHHcCC
Q 023179 102 IFDWIIITSP-EAGSVFLEAWKEAGT 126 (286)
Q Consensus 102 ~~d~IvFTS~-~av~~~~~~l~~~~~ 126 (286)
..|.|++.+. .....+++.+.+.++
T Consensus 190 ~~~~vi~~~~~~~~~~~~~~~~~~g~ 215 (298)
T cd06268 190 GPDAVFLAGYGGDAALFLKQAREAGL 215 (298)
T ss_pred CCCEEEEccccchHHHHHHHHHHcCC
Confidence 3455555543 333445555555444
No 496
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=32.77 E-value=71 Score=25.06 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=32.2
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc-CCCccEEEEeCHHHHH
Q 023179 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTIFDWIIITSPEAGS 115 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~-~~~~d~IvFTS~~av~ 115 (286)
...+.+.|++.|+++...+... .|.+.+.+.++. +..+|.||.|-..++.
T Consensus 21 ~~~l~~~l~~~G~~v~~~~~v~----Dd~~~i~~~i~~~~~~~DlvittGG~g~g 71 (133)
T cd00758 21 GPALEALLEDLGCEVIYAGVVP----DDADSIRAALIEASREADLVLTTGGTGVG 71 (133)
T ss_pred HHHHHHHHHHCCCEEEEeeecC----CCHHHHHHHHHHHHhcCCEEEECCCCCCC
Confidence 4578888999998876654442 233555565543 3458988888665543
No 497
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=32.70 E-value=1.4e+02 Score=25.85 Aligned_cols=37 Identities=32% Similarity=0.337 Sum_probs=27.5
Q ss_pred CCeEEEeCCCC--chHHHHHHHHhCCCcEEEeceEEeee
Q 023179 50 NPKVVVTRERG--KNGKLIKALAKHRIDCLELPLIQHAQ 86 (286)
Q Consensus 50 g~~VLitR~~~--~~~~l~~~L~~~G~~v~~~P~~~~~~ 86 (286)
.+-|-|.|... +...+++.|-+.|+.++++++-.-..
T Consensus 13 ~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a 51 (211)
T COG0800 13 QPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPAA 51 (211)
T ss_pred CCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCH
Confidence 35566666654 56789999999999999998765543
No 498
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=32.66 E-value=4.4e+02 Score=25.07 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=92.5
Q ss_pred CCCCCCCCccccccc-------cccccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHH
Q 023179 25 NRPLPFQFSRIQASS-------DATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV 96 (286)
Q Consensus 25 ~~~~~~~~~~~~~~~-------~~~~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~ 96 (286)
...+|.++.|.+..- .--..++||+|-+|..+-+-. +..-|...|.+.|++|...++=-+ ...+..-.+
T Consensus 13 a~~Gr~~i~wAe~~MP~L~~iR~~f~~~kPlkG~~i~~~lH~t~kTAvLietL~a~GAeV~~a~cNpl---STqD~vaaA 89 (420)
T COG0499 13 ADEGRKEIEWAEREMPVLMAIREEFAEEKPLKGARIAGCLHMTAKTAVLIETLKAGGAEVRWASCNPL---STQDDVAAA 89 (420)
T ss_pred hhhhhHHHHHHHhhChHHHHHHHHHhhcCCCCccEEEEEEeehHHHHHHHHHHHhcCceEEEecCCCC---cccHHHHHH
Confidence 334666777766421 122456999999999987754 678999999999999876443211 111222222
Q ss_pred HhcCCCc---------------------cE---EEEeC--------------------------HHHHHHHHHHHHHcCC
Q 023179 97 LNADTIF---------------------DW---IIITS--------------------------PEAGSVFLEAWKEAGT 126 (286)
Q Consensus 97 l~~~~~~---------------------d~---IvFTS--------------------------~~av~~~~~~l~~~~~ 126 (286)
|...... +| ||+-+ ..+|..+-+ +.+.|.
T Consensus 90 l~~~~GipVfA~kGe~~eeY~~~~~~vl~~~p~iiiDDG~D~~~~vh~~~~~l~~~i~G~tEETTTGV~RL~a-m~~~G~ 168 (420)
T COG0499 90 LAAKEGIPVFAWKGETLEEYYEAIDQVLDWEPNIIIDDGGDLTKLVHLERPELLDAIKGGTEETTTGVHRLRA-MEKDGV 168 (420)
T ss_pred HhhccCceEEEEcCCCHHHHHHHHHHHhCcCCCEEEecCcceeeeeecccHHHHHHhcCCCcccchHHHHHHH-HHhcCC
Confidence 2110001 11 11111 223332211 222233
Q ss_pred CCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC---CCCCCEEEEEcCCCChhHHHHHHHhCCCe
Q 023179 127 PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN---GKKKCTVLYPASAKASNEIEEGLSNRGFE 203 (286)
Q Consensus 127 ~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~---~~~~~rvL~~~g~~~~~~L~~~L~~~G~~ 203 (286)
-..+++.|..+..+.+-+. -+ .+.+++++-|..- ...||.+++....-...-....|+..|++
T Consensus 169 L~fPai~VNDs~tK~~FDN----------rY----GtgqS~~DgI~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ 234 (420)
T COG0499 169 LKFPAINVNDSVTKSLFDN----------RY----GTGQSLLDGILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGAR 234 (420)
T ss_pred cccceEeecchhhhccccc----------cc----ccchhHHHHHHhhhceeecCceEEEecccccchHHHHHhhcCCCe
Confidence 3455555555554443222 01 3455666666542 23788888887776666789999999998
Q ss_pred eEEEEe
Q 023179 204 VVRLNT 209 (286)
Q Consensus 204 V~~~~v 209 (286)
|...++
T Consensus 235 ViVtEv 240 (420)
T COG0499 235 VIVTEV 240 (420)
T ss_pred EEEEec
Confidence 865554
No 499
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=32.63 E-value=1.3e+02 Score=28.17 Aligned_cols=73 Identities=21% Similarity=0.172 Sum_probs=41.6
Q ss_pred CHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHH---HHHH--cCCCCE
Q 023179 163 TGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQT---VLKQ--ALSIPV 231 (286)
Q Consensus 163 ~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~---~~~~--~~~~d~ 231 (286)
..+.|.+.+.+. ++|++++.+... .+.+.+.|++.|+++. +|.....+...+. ..+. ..++|.
T Consensus 16 ~~~~l~~~~~~~---~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~---~~~~v~~~p~~~~v~~~~~~~~~~~~D~ 89 (382)
T cd08187 16 TESELGKELKKY---GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVV---ELGGVEPNPRLETVREGIELCKEEKVDF 89 (382)
T ss_pred HHHHHHHHHHHh---CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEE---EECCccCCCCHHHHHHHHHHHHHcCCCE
Confidence 345555555543 478998877532 3568889998887653 4543333222222 2221 257888
Q ss_pred EE-EeChHHHH
Q 023179 232 VA-VASPSAVR 241 (286)
Q Consensus 232 Iv-ftS~sav~ 241 (286)
|+ +-.++..+
T Consensus 90 IIaiGGGS~iD 100 (382)
T cd08187 90 ILAVGGGSVID 100 (382)
T ss_pred EEEeCChHHHH
Confidence 88 66655554
No 500
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=32.55 E-value=1.1e+02 Score=28.53 Aligned_cols=58 Identities=12% Similarity=0.184 Sum_probs=38.6
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
|.+|+++-|. =..+....+..|+++..+|.-. ...|.+.+...+. ++.+.|++.+||-
T Consensus 99 gd~vl~~~Pt--f~~Y~~~a~~~g~~~~~v~~~~--~~~d~~~~~~~~~--~~~~lv~i~nPNN 156 (356)
T COG0079 99 GDTVLIPEPT--FSMYEIAAQLAGAEVVKVPLKE--FRLDLDAILAAIR--DKTKLVFLCNPNN 156 (356)
T ss_pred CCEEEEcCCC--hHHHHHHHHhcCCeEEEecccc--cccCHHHHHHhhh--cCCCEEEEeCCCC
Confidence 4577777765 2445555667899999888877 3334455555552 2688999998874
Done!