Query 023179
Match_columns 286
No_of_seqs 149 out of 1406
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 17:40:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4es6_A Uroporphyrinogen-III sy 100.0 5.1E-46 1.8E-50 329.6 23.2 235 46-286 2-245 (254)
2 3d8t_A Uroporphyrinogen-III sy 100.0 2.6E-45 8.9E-50 330.6 19.2 241 25-286 16-272 (286)
3 3re1_A Uroporphyrinogen-III sy 100.0 2.7E-45 9.3E-50 327.8 17.3 235 46-286 10-253 (269)
4 3mw8_A Uroporphyrinogen-III sy 100.0 2.5E-44 8.6E-49 316.0 21.9 227 50-286 1-233 (240)
5 1wcw_A Uroporphyrinogen III sy 100.0 2.3E-43 8E-48 313.3 20.8 228 46-286 4-247 (261)
6 1jr2_A Uroporphyrinogen-III sy 100.0 3.3E-43 1.1E-47 316.9 21.4 237 42-286 13-271 (286)
7 3p9z_A Uroporphyrinogen III co 100.0 7.5E-36 2.6E-40 260.7 16.0 194 75-286 17-216 (229)
8 3p9z_A Uroporphyrinogen III co 99.7 1.2E-16 4.2E-21 138.8 11.8 117 48-174 108-224 (229)
9 1jr2_A Uroporphyrinogen-III sy 99.7 1.1E-16 3.9E-21 143.4 10.9 122 48-175 155-280 (286)
10 3re1_A Uroporphyrinogen-III sy 99.7 1.2E-16 4.3E-21 142.0 8.8 122 47-175 138-262 (269)
11 4es6_A Uroporphyrinogen-III sy 99.7 3E-16 1E-20 138.2 10.6 120 47-173 130-252 (254)
12 1wcw_A Uroporphyrinogen III sy 99.6 3.2E-16 1.1E-20 138.4 7.6 118 50-174 130-255 (261)
13 3d8t_A Uroporphyrinogen-III sy 99.6 8E-16 2.7E-20 137.9 9.8 118 50-174 155-280 (286)
14 3mw8_A Uroporphyrinogen-III sy 99.6 5.4E-16 1.8E-20 135.4 7.8 119 47-172 117-239 (240)
15 3gbv_A Putative LACI-family tr 96.0 0.087 3E-06 45.4 12.4 195 63-274 29-246 (304)
16 3gv0_A Transcriptional regulat 96.0 0.014 4.9E-07 50.5 7.1 178 64-262 31-225 (288)
17 3qk7_A Transcriptional regulat 95.9 0.023 8E-07 49.4 8.1 169 63-250 30-209 (294)
18 3g1w_A Sugar ABC transporter; 95.8 0.035 1.2E-06 48.3 8.7 205 50-270 4-232 (305)
19 3egc_A Putative ribose operon 95.6 0.072 2.5E-06 45.9 9.9 180 63-262 28-223 (291)
20 3l49_A ABC sugar (ribose) tran 95.4 0.061 2.1E-06 46.2 9.0 191 50-262 5-225 (291)
21 3g85_A Transcriptional regulat 95.3 0.08 2.7E-06 45.5 9.2 179 63-261 32-224 (289)
22 3k4h_A Putative transcriptiona 95.1 0.033 1.1E-06 48.0 6.3 181 63-263 33-230 (292)
23 3h75_A Periplasmic sugar-bindi 95.1 0.24 8.3E-06 43.9 12.0 204 64-278 25-260 (350)
24 3rot_A ABC sugar transporter, 94.9 0.032 1.1E-06 48.5 5.5 195 51-264 4-228 (297)
25 2fep_A Catabolite control prot 94.9 0.11 3.8E-06 44.8 9.0 167 64-250 37-217 (289)
26 3d8u_A PURR transcriptional re 94.8 0.13 4.3E-06 43.8 9.1 175 64-262 24-218 (275)
27 3k9c_A Transcriptional regulat 94.8 0.096 3.3E-06 45.2 8.4 167 63-250 31-207 (289)
28 3brq_A HTH-type transcriptiona 94.7 0.13 4.4E-06 44.1 8.8 168 63-250 41-222 (296)
29 3kke_A LACI family transcripti 94.5 0.043 1.5E-06 47.8 5.5 178 63-263 35-235 (303)
30 3c3k_A Alanine racemase; struc 94.4 0.53 1.8E-05 40.3 12.2 162 64-249 29-205 (285)
31 3bbl_A Regulatory protein of L 94.4 0.2 7E-06 43.0 9.4 169 63-250 28-210 (287)
32 2rgy_A Transcriptional regulat 93.9 0.16 5.5E-06 43.8 7.8 167 64-250 29-211 (290)
33 3gyb_A Transcriptional regulat 93.9 0.14 4.9E-06 43.6 7.4 175 63-263 25-214 (280)
34 2fvy_A D-galactose-binding per 93.8 1.3 4.4E-05 38.0 13.5 185 63-262 22-237 (309)
35 3o74_A Fructose transport syst 93.7 0.29 1E-05 41.3 8.9 177 63-261 22-215 (272)
36 3e3m_A Transcriptional regulat 93.6 0.3 1E-05 43.5 9.3 190 51-261 71-286 (355)
37 3huu_A Transcription regulator 93.6 0.095 3.3E-06 45.6 5.7 175 64-262 48-239 (305)
38 3tb6_A Arabinose metabolism tr 93.5 0.26 8.8E-06 42.2 8.4 180 63-262 35-238 (298)
39 2o20_A Catabolite control prot 93.5 0.36 1.2E-05 42.5 9.5 163 64-250 84-261 (332)
40 3dbi_A Sugar-binding transcrip 93.4 0.41 1.4E-05 42.2 9.8 167 64-250 84-264 (338)
41 3lft_A Uncharacterized protein 93.4 0.94 3.2E-05 39.0 12.0 185 63-262 21-221 (295)
42 3ksm_A ABC-type sugar transpor 93.4 0.2 6.8E-06 42.4 7.3 180 63-263 20-223 (276)
43 1dbq_A Purine repressor; trans 93.2 0.22 7.5E-06 42.6 7.3 165 64-250 28-209 (289)
44 3clk_A Transcription regulator 92.8 0.5 1.7E-05 40.5 9.2 176 64-262 29-222 (290)
45 2rir_A Dipicolinate synthase, 92.7 0.34 1.2E-05 42.6 8.0 211 47-279 4-268 (300)
46 3hcw_A Maltose operon transcri 92.7 0.26 8.9E-06 42.6 7.2 176 63-262 32-229 (295)
47 3d4o_A Dipicolinate synthase s 92.5 0.51 1.8E-05 41.3 8.9 212 48-280 3-267 (293)
48 3l6u_A ABC-type sugar transpor 92.4 1 3.5E-05 38.4 10.6 178 63-262 28-229 (293)
49 2hsg_A Glucose-resistance amyl 92.4 0.2 6.8E-06 44.2 6.1 167 64-250 81-261 (332)
50 3jvd_A Transcriptional regulat 92.1 0.3 1E-05 43.2 6.9 183 51-261 65-267 (333)
51 1ccw_A Protein (glutamate muta 92.0 1.4 4.8E-05 34.1 10.0 111 50-173 3-132 (137)
52 2qh8_A Uncharacterized protein 91.9 0.82 2.8E-05 39.6 9.5 162 64-240 28-205 (302)
53 2dri_A D-ribose-binding protei 91.9 0.65 2.2E-05 39.4 8.6 175 64-261 22-215 (271)
54 3kjx_A Transcriptional regulat 91.8 0.2 6.8E-06 44.4 5.4 166 64-250 89-269 (344)
55 2h0a_A TTHA0807, transcription 91.7 0.52 1.8E-05 39.9 7.8 179 64-262 20-217 (276)
56 2q5c_A NTRC family transcripti 91.7 2.1 7.2E-05 35.3 11.2 117 127-279 50-167 (196)
57 3hs3_A Ribose operon repressor 91.6 0.12 4.3E-06 44.2 3.6 160 63-250 30-200 (277)
58 2yxb_A Coenzyme B12-dependent 91.5 1.2 4.2E-05 35.5 9.3 110 49-171 17-139 (161)
59 3jy6_A Transcriptional regulat 91.2 2.9 9.9E-05 35.3 12.1 173 64-261 28-217 (276)
60 3aek_B Light-independent proto 91.1 5.4 0.00018 38.0 14.9 197 61-277 171-372 (525)
61 3e61_A Putative transcriptiona 91.1 1.3 4.3E-05 37.5 9.6 163 63-251 28-200 (277)
62 2pju_A Propionate catabolism o 90.9 2.3 7.9E-05 36.0 10.9 116 128-279 63-179 (225)
63 2h3h_A Sugar ABC transporter, 90.9 0.48 1.6E-05 41.2 6.9 177 65-263 22-218 (313)
64 3m9w_A D-xylose-binding peripl 90.8 1.2 4.2E-05 38.5 9.4 180 63-262 22-223 (313)
65 1qpz_A PURA, protein (purine n 90.7 0.71 2.4E-05 40.7 7.9 165 64-250 79-260 (340)
66 2ioy_A Periplasmic sugar-bindi 90.7 1.3 4.4E-05 37.8 9.3 174 64-262 22-217 (283)
67 3k5p_A D-3-phosphoglycerate de 90.5 6.1 0.00021 36.5 14.1 172 46-239 11-219 (416)
68 3cs3_A Sugar-binding transcrip 90.4 1.1 3.7E-05 38.0 8.6 172 63-262 28-214 (277)
69 2vk2_A YTFQ, ABC transporter p 90.3 0.93 3.2E-05 39.1 8.1 196 65-279 24-247 (306)
70 1lss_A TRK system potassium up 89.8 3.7 0.00013 30.5 10.4 114 50-171 4-134 (140)
71 3llv_A Exopolyphosphatase-rela 89.7 3.1 0.00011 31.5 10.0 116 49-172 5-136 (141)
72 2g1u_A Hypothetical protein TM 89.4 1.5 5E-05 34.2 7.9 119 44-172 13-150 (155)
73 2iks_A DNA-binding transcripti 89.3 1.8 6E-05 37.0 9.1 162 64-250 41-219 (293)
74 2rjo_A Twin-arginine transloca 89.1 1.1 3.6E-05 39.3 7.6 180 64-262 26-232 (332)
75 1mio_B Nitrogenase molybdenum 89.0 5.1 0.00018 37.3 12.6 199 62-276 184-407 (458)
76 4gx0_A TRKA domain protein; me 88.9 5 0.00017 38.2 12.8 220 50-282 127-381 (565)
77 2yxb_A Coenzyme B12-dependent 88.7 2 7E-05 34.2 8.4 99 177-281 17-130 (161)
78 3miz_A Putative transcriptiona 88.5 0.22 7.5E-06 43.1 2.6 179 63-261 34-233 (301)
79 3eod_A Protein HNR; response r 88.4 5.7 0.0002 28.8 11.3 113 46-173 3-122 (130)
80 2hmt_A YUAA protein; RCK, KTN, 88.3 1.5 5.3E-05 32.9 7.2 114 48-171 4-136 (144)
81 2x7x_A Sensor protein; transfe 88.1 2.8 9.4E-05 36.5 9.7 142 101-260 61-221 (325)
82 4fe7_A Xylose operon regulator 87.8 1.2 3.9E-05 40.7 7.2 164 64-249 45-224 (412)
83 3fwz_A Inner membrane protein 87.6 4.1 0.00014 31.0 9.3 114 50-171 7-137 (140)
84 2qu7_A Putative transcriptiona 87.5 0.26 9E-06 42.2 2.5 175 65-262 29-224 (288)
85 3bil_A Probable LACI-family tr 87.2 5.2 0.00018 35.2 11.0 162 64-250 87-263 (348)
86 1jx6_A LUXP protein; protein-l 86.8 1.2 4.2E-05 39.0 6.6 187 64-264 65-270 (342)
87 3aek_A Light-independent proto 86.4 2.6 9E-05 39.1 8.9 202 51-275 184-398 (437)
88 2fn9_A Ribose ABC transporter, 86.4 1.9 6.4E-05 36.7 7.4 175 64-261 23-224 (290)
89 3d02_A Putative LACI-type tran 86.0 2.3 7.9E-05 36.3 7.9 190 64-274 25-238 (303)
90 3fwz_A Inner membrane protein 86.0 8 0.00027 29.3 10.2 53 227-280 70-126 (140)
91 3c85_A Putative glutathione-re 86.0 4.5 0.00015 32.1 9.1 117 47-172 36-172 (183)
92 1gud_A ALBP, D-allose-binding 85.6 5.5 0.00019 33.8 10.0 183 64-263 22-229 (288)
93 3h5t_A Transcriptional regulat 84.7 0.97 3.3E-05 40.3 4.9 148 100-262 126-305 (366)
94 3lkv_A Uncharacterized conserv 83.7 14 0.00047 31.9 11.9 182 50-246 8-211 (302)
95 3brs_A Periplasmic binding pro 83.6 0.86 2.9E-05 38.8 3.9 177 64-262 28-225 (289)
96 1id1_A Putative potassium chan 83.4 13 0.00045 28.4 10.8 114 50-172 3-138 (153)
97 4evq_A Putative ABC transporte 83.2 10 0.00034 33.2 10.9 149 101-261 81-239 (375)
98 2wm8_A MDP-1, magnesium-depend 83.1 3.9 0.00013 32.5 7.5 106 58-174 69-179 (187)
99 2hqb_A Transcriptional activat 82.4 6.6 0.00023 33.9 9.2 167 64-249 28-202 (296)
100 1ccw_A Protein (glutamate muta 81.9 1.7 5.8E-05 33.6 4.6 88 190-281 20-121 (137)
101 3h5o_A Transcriptional regulat 81.6 1.5 5E-05 38.6 4.7 164 63-250 82-261 (339)
102 2amj_A Modulator of drug activ 81.3 3.7 0.00013 33.8 6.8 65 178-246 12-95 (204)
103 2pln_A HP1043, response regula 81.3 14 0.00046 27.0 10.5 113 46-174 14-130 (137)
104 1jye_A Lactose operon represso 81.2 2.9 0.0001 36.9 6.5 161 64-249 82-259 (349)
105 4eyg_A Twin-arginine transloca 81.2 7.2 0.00025 34.1 9.2 159 101-272 71-242 (368)
106 1tjy_A Sugar transport protein 80.9 2.5 8.6E-05 36.7 5.9 185 64-272 24-234 (316)
107 3td9_A Branched chain amino ac 80.7 27 0.00094 30.3 12.9 146 101-260 80-236 (366)
108 4dik_A Flavoprotein; TM0755, e 79.8 3.2 0.00011 38.3 6.4 85 190-276 283-383 (410)
109 3c85_A Putative glutathione-re 79.3 17 0.00058 28.6 10.1 55 226-280 103-160 (183)
110 1byk_A Protein (trehalose oper 78.7 15 0.00051 30.2 9.9 169 64-263 23-207 (255)
111 1y80_A Predicted cobalamin bin 78.5 8.9 0.00031 31.4 8.3 90 50-145 88-188 (210)
112 2i2x_B MTAC, methyltransferase 78.3 13 0.00045 31.7 9.6 89 50-145 123-221 (258)
113 2xij_A Methylmalonyl-COA mutas 78.2 19 0.00065 35.9 11.7 111 50-173 604-727 (762)
114 3hdv_A Response regulator; PSI 77.9 17 0.0006 26.3 11.1 113 49-174 6-124 (136)
115 3l4b_C TRKA K+ channel protien 77.5 13 0.00046 30.2 9.2 114 51-172 1-132 (218)
116 2xdq_A Light-independent proto 77.3 30 0.001 32.0 12.4 140 51-208 197-347 (460)
117 3llv_A Exopolyphosphatase-rela 76.9 19 0.00064 26.9 9.3 111 156-280 10-124 (141)
118 3u7q_A Nitrogenase molybdenum- 76.8 48 0.0016 31.1 13.8 204 50-275 220-438 (492)
119 4a26_A Putative C-1-tetrahydro 76.4 2.9 9.8E-05 37.0 4.8 165 51-238 40-220 (300)
120 1id1_A Putative potassium chan 76.4 19 0.00064 27.5 9.2 53 226-279 69-125 (153)
121 5nul_A Flavodoxin; electron tr 76.0 2.5 8.4E-05 32.0 3.8 71 53-135 3-86 (138)
122 3hut_A Putative branched-chain 75.8 25 0.00086 30.4 11.0 146 100-260 70-226 (358)
123 2xdq_B Light-independent proto 75.5 8.1 0.00028 36.6 8.0 192 61-277 184-395 (511)
124 2fqx_A Membrane lipoprotein TM 75.2 19 0.00065 31.2 10.0 165 64-248 28-208 (318)
125 4dik_A Flavoprotein; TM0755, e 74.7 5.6 0.00019 36.6 6.6 82 51-136 266-360 (410)
126 2rjn_A Response regulator rece 74.4 24 0.00083 26.2 12.7 114 46-173 3-122 (154)
127 3lte_A Response regulator; str 74.1 22 0.00074 25.5 10.1 112 49-174 5-122 (132)
128 3hdg_A Uncharacterized protein 74.1 22 0.00077 25.7 9.1 110 49-173 6-121 (137)
129 2fzv_A Putative arsenical resi 74.0 5 0.00017 35.0 5.7 72 178-249 58-151 (279)
130 3pdi_B Nitrogenase MOFE cofact 73.4 56 0.0019 30.3 13.2 202 50-275 169-396 (458)
131 3gt7_A Sensor protein; structu 73.3 26 0.0009 26.2 11.5 111 49-173 6-123 (154)
132 3rht_A (gatase1)-like protein; 73.3 5.7 0.00019 34.3 5.8 74 50-136 4-87 (259)
133 3rht_A (gatase1)-like protein; 73.1 5.5 0.00019 34.3 5.7 72 179-261 5-86 (259)
134 2q62_A ARSH; alpha/beta, flavo 72.5 8.4 0.00029 32.8 6.7 72 178-249 34-126 (247)
135 1sqs_A Conserved hypothetical 71.5 8.9 0.0003 32.1 6.6 57 192-248 23-106 (242)
136 2g1u_A Hypothetical protein TM 71.3 24 0.00083 26.9 8.8 102 177-280 18-138 (155)
137 2hmt_A YUAA protein; RCK, KTN, 71.0 28 0.00096 25.5 9.2 53 226-280 68-125 (144)
138 2cuk_A Glycerate dehydrogenase 69.7 13 0.00043 32.8 7.4 165 51-239 1-204 (311)
139 3cg0_A Response regulator rece 68.8 30 0.001 25.0 8.7 113 46-173 5-124 (140)
140 3d64_A Adenosylhomocysteinase; 68.6 77 0.0026 29.8 13.0 52 28-79 46-105 (494)
141 3f2v_A General stress protein 68.1 1.7 5.8E-05 35.8 1.2 50 62-112 19-68 (192)
142 1sc6_A PGDH, D-3-phosphoglycer 68.1 72 0.0024 29.0 15.4 168 50-239 4-208 (404)
143 3o1i_D Periplasmic protein TOR 68.0 1.3 4.6E-05 37.8 0.6 174 64-259 26-225 (304)
144 4dad_A Putative pilus assembly 68.0 33 0.0011 25.1 8.9 114 46-173 16-137 (146)
145 4a5o_A Bifunctional protein fo 67.9 5.8 0.0002 34.8 4.7 160 52-237 39-213 (286)
146 4fs3_A Enoyl-[acyl-carrier-pro 67.8 19 0.00065 30.3 8.0 73 47-123 3-82 (256)
147 3ezx_A MMCP 1, monomethylamine 67.5 14 0.00048 30.7 6.9 90 50-145 92-194 (215)
148 3hv2_A Response regulator/HD d 67.4 35 0.0012 25.3 10.0 113 46-173 10-129 (153)
149 3f6r_A Flavodoxin; FMN binding 67.3 20 0.0007 27.0 7.4 76 192-276 21-120 (148)
150 2vzf_A NADH-dependent FMN redu 67.2 4.2 0.00014 33.0 3.5 58 192-249 24-97 (197)
151 2aef_A Calcium-gated potassium 67.0 22 0.00074 29.2 8.1 112 50-171 9-137 (234)
152 3ctp_A Periplasmic binding pro 67.0 36 0.0012 29.2 9.9 160 64-250 81-253 (330)
153 3f2v_A General stress protein 66.9 3.7 0.00013 33.6 3.1 59 190-248 19-85 (192)
154 4g2n_A D-isomer specific 2-hyd 66.9 70 0.0024 28.5 13.0 167 49-238 27-237 (345)
155 3rqi_A Response regulator prot 66.9 43 0.0015 26.0 10.4 112 47-173 4-121 (184)
156 1pea_A Amidase operon; gene re 66.6 25 0.00087 30.9 9.0 148 101-261 74-233 (385)
157 3ipc_A ABC transporter, substr 66.5 49 0.0017 28.4 10.7 155 91-259 60-224 (356)
158 3f6r_A Flavodoxin; FMN binding 66.3 5.3 0.00018 30.5 3.8 63 63-136 20-93 (148)
159 3l07_A Bifunctional protein fo 66.2 8.1 0.00028 33.8 5.3 162 51-237 37-213 (285)
160 1usg_A Leucine-specific bindin 65.9 62 0.0021 27.5 11.9 148 101-260 68-225 (346)
161 3lkb_A Probable branched-chain 65.9 68 0.0023 28.0 12.4 148 101-260 74-230 (392)
162 1req_A Methylmalonyl-COA mutas 65.8 37 0.0013 33.7 10.4 110 50-172 596-718 (727)
163 1j4a_A D-LDH, D-lactate dehydr 65.7 38 0.0013 29.9 9.9 197 51-273 2-254 (333)
164 1mio_A Nitrogenase molybdenum 65.7 8 0.00027 36.9 5.6 143 60-212 219-369 (533)
165 1qgu_B Protein (nitrogenase mo 65.4 6.6 0.00022 37.3 4.9 141 62-210 233-392 (519)
166 4gi5_A Quinone reductase; prot 65.1 3.7 0.00013 35.9 2.9 37 49-85 21-65 (280)
167 3l9w_A Glutathione-regulated p 64.9 36 0.0012 31.1 9.7 103 50-160 4-123 (413)
168 3k1y_A Oxidoreductase; structu 64.8 9.9 0.00034 30.9 5.4 72 179-250 12-114 (191)
169 1dxy_A D-2-hydroxyisocaproate 64.8 42 0.0014 29.7 9.9 170 51-239 1-208 (333)
170 1t0i_A YLR011WP; FMN binding p 64.3 21 0.0007 28.3 7.2 28 222-249 78-112 (191)
171 3fni_A Putative diflavin flavo 64.3 18 0.00061 28.2 6.6 80 51-136 5-95 (159)
172 1cyd_A Carbonyl reductase; sho 64.1 28 0.00096 28.4 8.2 34 46-79 3-37 (244)
173 3t4x_A Oxidoreductase, short c 63.7 30 0.001 29.0 8.5 35 45-79 5-40 (267)
174 3eaf_A ABC transporter, substr 63.7 43 0.0015 29.4 9.9 146 100-260 74-231 (391)
175 3uce_A Dehydrogenase; rossmann 63.6 4.3 0.00015 33.4 2.9 63 48-110 4-67 (223)
176 3l9w_A Glutathione-regulated p 63.3 48 0.0016 30.3 10.3 111 155-280 7-123 (413)
177 1rtt_A Conserved hypothetical 62.9 16 0.00053 29.2 6.2 73 51-123 7-100 (193)
178 3rd5_A Mypaa.01249.C; ssgcid, 62.8 31 0.0011 29.3 8.5 34 46-79 12-46 (291)
179 3s5j_B Ribose-phosphate pyroph 62.8 82 0.0028 27.9 12.8 253 1-280 1-273 (326)
180 2qip_A Protein of unknown func 62.4 4.1 0.00014 32.4 2.5 82 61-145 62-152 (165)
181 3gbv_A Putative LACI-family tr 61.8 28 0.00097 29.1 8.0 76 63-139 159-236 (304)
182 1e5d_A Rubredoxin\:oxygen oxid 61.6 49 0.0017 29.3 10.0 94 178-276 252-367 (402)
183 3hly_A Flavodoxin-like domain; 61.6 13 0.00046 28.9 5.4 67 63-136 19-90 (161)
184 5nul_A Flavodoxin; electron tr 61.6 11 0.00038 28.2 4.8 75 192-276 18-111 (138)
185 2vzf_A NADH-dependent FMN redu 61.4 2.7 9.4E-05 34.1 1.3 85 51-135 3-109 (197)
186 4e5n_A Thermostable phosphite 61.2 36 0.0012 30.1 8.8 165 50-238 2-210 (330)
187 4dgs_A Dehydrogenase; structur 61.1 71 0.0024 28.4 10.7 177 42-239 22-233 (340)
188 3tem_A Ribosyldihydronicotinam 61.1 4 0.00014 34.3 2.3 70 179-248 2-119 (228)
189 2qr3_A Two-component system re 61.0 43 0.0015 24.1 10.3 110 50-174 3-123 (140)
190 2fz5_A Flavodoxin; alpha/beta 61.0 8.1 0.00028 28.7 3.9 60 64-135 19-87 (137)
191 4b79_A PA4098, probable short- 60.9 28 0.00096 29.4 7.6 32 48-79 9-41 (242)
192 2gk3_A Putative cytoplasmic pr 60.8 6.8 0.00023 33.5 3.8 48 57-110 37-85 (256)
193 3gl9_A Response regulator; bet 60.7 42 0.0014 23.8 10.1 109 51-173 3-118 (122)
194 3kto_A Response regulator rece 59.8 46 0.0016 24.0 9.0 109 50-173 6-122 (136)
195 1lss_A TRK system potassium up 59.7 47 0.0016 24.1 10.6 55 226-280 67-123 (140)
196 3tem_A Ribosyldihydronicotinam 59.5 4.6 0.00016 33.9 2.4 35 50-84 1-43 (228)
197 2hpv_A FMN-dependent NADH-azor 59.0 9.3 0.00032 30.9 4.2 58 192-249 25-122 (208)
198 1xg5_A ARPG836; short chain de 58.8 76 0.0026 26.5 10.3 33 47-79 29-62 (279)
199 4imr_A 3-oxoacyl-(acyl-carrier 58.5 26 0.00088 29.7 7.2 95 25-125 10-108 (275)
200 1p9l_A Dihydrodipicolinate red 58.5 43 0.0015 28.3 8.4 91 180-282 2-105 (245)
201 3h1g_A Chemotaxis protein CHEY 58.2 48 0.0016 23.7 9.7 115 47-173 2-123 (129)
202 3l5o_A Uncharacterized protein 58.1 18 0.00062 31.3 6.0 93 177-276 140-236 (270)
203 1rtt_A Conserved hypothetical 58.1 16 0.00055 29.1 5.5 69 180-249 8-100 (193)
204 3oig_A Enoyl-[acyl-carrier-pro 57.9 40 0.0014 28.0 8.2 75 46-124 3-84 (266)
205 3h5i_A Response regulator/sens 57.7 48 0.0016 24.1 7.9 109 49-172 4-119 (140)
206 2i2x_B MTAC, methyltransferase 57.5 55 0.0019 27.7 9.0 89 177-272 122-223 (258)
207 3oec_A Carveol dehydrogenase ( 57.4 26 0.0009 30.4 7.1 77 46-123 42-131 (317)
208 1fs0_G ATP synthase gamma subu 57.0 13 0.00046 31.1 4.9 49 102-156 57-116 (230)
209 3m3p_A Glutamine amido transfe 57.0 9.3 0.00032 32.6 4.0 94 49-157 2-105 (250)
210 1qv9_A F420-dependent methylen 56.9 7.1 0.00024 33.3 3.0 53 102-160 64-121 (283)
211 4id9_A Short-chain dehydrogena 56.7 51 0.0018 28.3 9.0 65 43-110 12-85 (347)
212 4fgs_A Probable dehydrogenase 56.7 35 0.0012 29.3 7.7 73 44-123 23-99 (273)
213 3r0j_A Possible two component 56.7 80 0.0027 25.7 11.2 110 49-173 22-137 (250)
214 2pzm_A Putative nucleotide sug 56.3 27 0.00091 30.2 7.0 39 41-79 11-50 (330)
215 3fvw_A Putative NAD(P)H-depend 56.3 31 0.0011 27.7 6.9 55 193-249 25-95 (192)
216 3g85_A Transcriptional regulat 56.0 27 0.00091 29.2 6.8 73 63-135 147-224 (289)
217 3d3w_A L-xylulose reductase; u 55.8 51 0.0018 26.7 8.4 32 47-78 4-36 (244)
218 3grc_A Sensor protein, kinase; 55.7 55 0.0019 23.6 10.0 110 50-173 6-123 (140)
219 1u7z_A Coenzyme A biosynthesis 55.6 9.6 0.00033 32.1 3.7 34 46-79 4-54 (226)
220 3fni_A Putative diflavin flavo 55.4 23 0.00077 27.6 5.8 81 192-276 24-118 (159)
221 3n0w_A ABC branched chain amin 55.4 53 0.0018 28.6 9.0 138 101-251 72-221 (379)
222 3rpe_A MDAB, modulator of drug 55.2 13 0.00043 31.1 4.4 65 179-247 26-109 (218)
223 3m6m_D Sensory/regulatory prot 55.2 59 0.002 23.8 10.8 115 47-175 11-134 (143)
224 2yq5_A D-isomer specific 2-hyd 55.2 10 0.00034 34.1 4.0 200 51-273 2-255 (343)
225 3lua_A Response regulator rece 54.8 57 0.002 23.5 10.1 112 50-174 4-124 (140)
226 3i1j_A Oxidoreductase, short c 54.6 40 0.0014 27.6 7.5 75 46-124 10-91 (247)
227 3f9i_A 3-oxoacyl-[acyl-carrier 54.1 49 0.0017 27.1 8.0 33 46-78 10-43 (249)
228 3kp1_A D-ornithine aminomutase 53.7 41 0.0014 33.0 8.0 111 50-173 602-731 (763)
229 3h9u_A Adenosylhomocysteinase; 53.6 1.4E+02 0.0047 27.6 14.3 36 43-78 36-72 (436)
230 3cz5_A Two-component response 53.6 64 0.0022 23.7 9.5 113 49-175 4-123 (153)
231 1rli_A Trp repressor binding p 53.5 8.3 0.00028 30.4 2.9 61 51-112 4-81 (184)
232 2ag5_A DHRS6, dehydrogenase/re 53.5 46 0.0016 27.3 7.8 33 47-79 3-36 (246)
233 3cg4_A Response regulator rece 52.7 40 0.0014 24.4 6.6 112 47-172 4-122 (142)
234 3hg7_A D-isomer specific 2-hyd 52.3 1.1E+02 0.0036 27.0 10.2 171 47-237 2-203 (324)
235 3hzh_A Chemotaxis response reg 52.2 70 0.0024 23.8 9.4 112 50-174 36-154 (157)
236 3snk_A Response regulator CHEY 52.2 41 0.0014 24.2 6.6 111 49-174 13-130 (135)
237 1rli_A Trp repressor binding p 52.1 16 0.00054 28.7 4.4 28 221-248 64-98 (184)
238 2xij_A Methylmalonyl-COA mutas 52.0 53 0.0018 32.7 8.8 97 179-281 605-716 (762)
239 3l7n_A Putative uncharacterize 52.0 27 0.00092 29.1 6.0 51 51-110 1-53 (236)
240 1q7r_A Predicted amidotransfer 52.0 27 0.00092 28.6 6.0 50 48-112 21-70 (219)
241 3pdi_A Nitrogenase MOFE cofact 51.9 17 0.00058 34.1 5.2 194 60-273 216-420 (483)
242 3hly_A Flavodoxin-like domain; 51.7 39 0.0013 26.1 6.6 79 192-275 20-112 (161)
243 2zay_A Response regulator rece 51.6 66 0.0023 23.3 9.2 111 49-173 7-124 (147)
244 1t0i_A YLR011WP; FMN binding p 51.1 12 0.00042 29.7 3.6 19 94-112 76-94 (191)
245 1a4i_A Methylenetetrahydrofola 51.1 41 0.0014 29.6 7.1 163 51-238 38-218 (301)
246 4id3_A DNA repair protein REV1 51.1 21 0.00073 24.6 4.5 35 43-77 3-38 (92)
247 3ruf_A WBGU; rossmann fold, UD 51.0 1E+02 0.0035 26.4 10.0 33 47-79 22-55 (351)
248 2gkg_A Response regulator homo 50.8 60 0.002 22.6 8.5 110 50-173 5-121 (127)
249 3npg_A Uncharacterized DUF364 50.7 17 0.00057 31.1 4.5 125 133-276 83-215 (249)
250 3oet_A Erythronate-4-phosphate 50.7 17 0.00058 33.1 4.8 162 50-239 3-181 (381)
251 4e7p_A Response regulator; DNA 50.5 72 0.0024 23.4 10.6 116 47-175 17-138 (150)
252 2hna_A Protein MIOC, flavodoxi 50.3 24 0.00081 26.7 5.0 61 63-136 20-90 (147)
253 3ph3_A Ribose-5-phosphate isom 50.2 66 0.0023 25.7 7.6 113 49-173 19-141 (169)
254 2k6g_A Replication factor C su 50.1 25 0.00084 25.9 4.8 33 45-77 30-64 (109)
255 2cok_A Poly [ADP-ribose] polym 50.0 24 0.00084 26.2 4.8 33 45-77 8-41 (113)
256 1xrs_B D-lysine 5,6-aminomutas 49.8 55 0.0019 28.1 7.7 110 50-172 120-253 (262)
257 3ek2_A Enoyl-(acyl-carrier-pro 49.6 47 0.0016 27.5 7.3 75 46-124 10-89 (271)
258 3kcn_A Adenylate cyclase homol 49.4 75 0.0026 23.3 11.3 109 50-173 4-119 (151)
259 3k4h_A Putative transcriptiona 49.2 29 0.001 28.9 5.9 76 63-138 151-231 (292)
260 3i6i_A Putative leucoanthocyan 49.1 46 0.0016 28.8 7.4 33 47-79 7-40 (346)
261 3k31_A Enoyl-(acyl-carrier-pro 48.7 58 0.002 27.7 7.9 75 46-124 26-105 (296)
262 1e5d_A Rubredoxin\:oxygen oxid 48.5 32 0.0011 30.6 6.4 79 50-135 252-343 (402)
263 3jtm_A Formate dehydrogenase, 48.4 1.2E+02 0.0042 26.9 10.1 184 64-273 31-275 (351)
264 3ddh_A Putative haloacid dehal 48.3 27 0.00093 27.5 5.4 90 59-160 107-203 (234)
265 3r6w_A FMN-dependent NADH-azor 48.1 14 0.00049 30.0 3.6 56 192-247 24-113 (212)
266 3p2o_A Bifunctional protein fo 48.0 47 0.0016 28.9 7.0 162 50-237 35-212 (285)
267 3s5p_A Ribose 5-phosphate isom 47.7 1E+02 0.0036 24.5 8.9 112 51-173 22-142 (166)
268 1qkk_A DCTD, C4-dicarboxylate 47.7 81 0.0028 23.2 11.6 109 50-173 3-117 (155)
269 1lnq_A MTHK channels, potassiu 47.4 76 0.0026 27.5 8.6 112 50-171 115-243 (336)
270 3u7q_B Nitrogenase molybdenum- 47.3 21 0.00071 33.9 5.0 140 62-209 237-395 (523)
271 2qxy_A Response regulator; reg 47.2 77 0.0026 22.8 12.0 109 50-173 4-117 (142)
272 3ksx_A Nitrate transport prote 47.1 23 0.00079 30.4 5.0 69 42-115 123-191 (324)
273 3egc_A Putative ribose operon 46.9 96 0.0033 25.6 8.9 89 50-138 125-225 (291)
274 2hqr_A Putative transcriptiona 46.8 1.1E+02 0.0036 24.3 10.7 110 51-175 1-113 (223)
275 3uf0_A Short-chain dehydrogena 46.8 1.2E+02 0.0041 25.4 9.5 90 26-125 11-105 (273)
276 3h75_A Periplasmic sugar-bindi 46.4 1.2E+02 0.004 26.1 9.6 88 51-139 146-245 (350)
277 4gi5_A Quinone reductase; prot 46.4 12 0.0004 32.7 2.9 71 178-248 22-139 (280)
278 3snr_A Extracellular ligand-bi 46.0 53 0.0018 28.0 7.2 91 50-142 135-231 (362)
279 1xdw_A NAD+-dependent (R)-2-hy 45.9 1E+02 0.0034 27.1 9.1 167 51-238 1-208 (331)
280 3dzz_A Putative pyridoxal 5'-p 45.7 76 0.0026 27.5 8.3 60 49-111 108-169 (391)
281 2iuf_A Catalase; oxidoreductas 45.4 37 0.0013 33.4 6.5 92 46-145 525-648 (688)
282 3l4e_A Uncharacterized peptida 45.4 29 0.001 28.5 5.1 68 177-250 26-100 (206)
283 3l5o_A Uncharacterized protein 45.2 47 0.0016 28.6 6.5 115 46-173 137-253 (270)
284 3snr_A Extracellular ligand-bi 45.1 65 0.0022 27.4 7.7 145 101-260 68-222 (362)
285 2q9u_A A-type flavoprotein; fl 45.1 66 0.0023 28.7 8.0 80 192-276 276-373 (414)
286 3njr_A Precorrin-6Y methylase; 45.1 92 0.0031 24.8 8.2 100 110-217 86-187 (204)
287 4evq_A Putative ABC transporte 45.0 46 0.0016 28.8 6.7 84 50-136 151-240 (375)
288 3i4f_A 3-oxoacyl-[acyl-carrier 44.7 51 0.0017 27.2 6.7 87 46-135 3-94 (264)
289 3rpe_A MDAB, modulator of drug 44.7 14 0.00047 30.9 3.0 57 50-112 25-93 (218)
290 3lcm_A SMU.1420, putative oxid 44.6 10 0.00036 30.7 2.2 51 62-112 16-83 (196)
291 2qh8_A Uncharacterized protein 44.5 79 0.0027 26.6 8.1 17 227-243 68-84 (302)
292 2q62_A ARSH; alpha/beta, flavo 44.3 21 0.00071 30.3 4.1 66 47-112 31-108 (247)
293 4gkb_A 3-oxoacyl-[acyl-carrier 44.3 1.2E+02 0.0042 25.5 9.1 150 46-209 3-183 (258)
294 3l4b_C TRKA K+ channel protien 44.0 65 0.0022 25.9 7.1 54 226-279 63-119 (218)
295 3lft_A Uncharacterized protein 44.0 85 0.0029 26.3 8.2 52 192-244 22-78 (295)
296 3kp1_A D-ornithine aminomutase 44.0 1.3E+02 0.0045 29.5 9.8 108 161-277 588-716 (763)
297 2nm0_A Probable 3-oxacyl-(acyl 43.9 70 0.0024 26.5 7.4 34 45-78 16-50 (253)
298 3l6u_A ABC-type sugar transpor 43.8 17 0.00058 30.5 3.5 71 63-137 155-230 (293)
299 3e48_A Putative nucleoside-dip 43.7 1.4E+02 0.0047 24.7 10.0 72 51-125 1-97 (289)
300 2yxd_A Probable cobalt-precorr 43.7 1E+02 0.0035 23.2 9.4 96 109-214 65-161 (183)
301 3nrc_A Enoyl-[acyl-carrier-pro 43.7 76 0.0026 26.6 7.8 74 46-124 22-100 (280)
302 3o38_A Short chain dehydrogena 43.6 84 0.0029 25.9 8.0 75 46-124 18-98 (266)
303 3heb_A Response regulator rece 43.6 93 0.0032 22.7 11.7 111 50-173 4-131 (152)
304 2ohh_A Type A flavoprotein FPR 43.3 29 0.00099 30.9 5.2 81 191-276 275-374 (404)
305 3edm_A Short chain dehydrogena 43.3 63 0.0022 26.8 7.1 75 46-123 4-82 (259)
306 2q1w_A Putative nucleotide sug 43.0 59 0.002 27.9 7.1 35 45-79 16-51 (333)
307 2ebu_A Replication factor C su 42.9 33 0.0011 25.4 4.5 32 46-77 21-54 (112)
308 3h5l_A Putative branched-chain 42.6 65 0.0022 28.5 7.5 93 49-144 163-263 (419)
309 1l7b_A DNA ligase; BRCT, autos 42.4 28 0.00094 24.8 3.9 33 45-77 5-38 (92)
310 2dr1_A PH1308 protein, 386AA l 42.4 28 0.00094 30.3 4.8 63 49-112 94-156 (386)
311 2ohh_A Type A flavoprotein FPR 42.3 34 0.0012 30.4 5.5 65 64-135 276-350 (404)
312 2amj_A Modulator of drug activ 42.3 13 0.00046 30.3 2.5 43 64-112 38-80 (204)
313 3kht_A Response regulator; PSI 42.1 95 0.0032 22.4 11.2 113 49-173 4-124 (144)
314 1fs0_G ATP synthase gamma subu 42.1 34 0.0012 28.6 5.1 49 228-276 57-116 (230)
315 3g1w_A Sugar ABC transporter; 42.0 37 0.0013 28.5 5.4 76 63-138 146-224 (305)
316 4dry_A 3-oxoacyl-[acyl-carrier 42.0 53 0.0018 27.8 6.5 75 45-123 28-107 (281)
317 3lop_A Substrate binding perip 41.6 90 0.0031 26.8 8.1 146 101-261 72-229 (364)
318 1yb1_A 17-beta-hydroxysteroid 41.6 32 0.0011 28.8 5.0 97 20-123 4-104 (272)
319 2ark_A Flavodoxin; FMN, struct 41.4 34 0.0012 27.1 4.9 49 192-249 24-80 (188)
320 3lec_A NADB-rossmann superfami 41.2 65 0.0022 26.9 6.7 31 178-208 117-147 (230)
321 1b0a_A Protein (fold bifunctio 41.2 33 0.0011 29.9 4.9 161 51-237 36-211 (288)
322 3i42_A Response regulator rece 41.1 90 0.0031 21.9 7.6 109 50-175 3-120 (127)
323 2gk3_A Putative cytoplasmic pr 41.1 53 0.0018 27.7 6.2 48 186-236 38-85 (256)
324 3aek_B Light-independent proto 41.1 71 0.0024 30.1 7.7 108 28-155 262-370 (525)
325 4gx0_A TRKA domain protein; me 41.0 92 0.0031 29.3 8.6 113 51-172 349-475 (565)
326 3un6_A Hypothetical protein sa 41.0 52 0.0018 28.4 6.4 69 42-115 145-215 (341)
327 2hpv_A FMN-dependent NADH-azor 41.0 9.9 0.00034 30.8 1.5 20 63-82 24-45 (208)
328 3s2u_A UDP-N-acetylglucosamine 40.8 1.1E+02 0.0039 26.7 8.8 63 128-199 254-320 (365)
329 3e8x_A Putative NAD-dependent 40.8 27 0.00092 28.4 4.2 34 46-79 17-51 (236)
330 3lcm_A SMU.1420, putative oxid 40.8 13 0.00045 30.1 2.2 50 199-248 28-100 (196)
331 3r6w_A FMN-dependent NADH-azor 40.6 16 0.00056 29.7 2.8 22 191-212 165-186 (212)
332 2rdm_A Response regulator rece 40.6 93 0.0032 21.8 10.9 109 49-173 4-119 (132)
333 2aef_A Calcium-gated potassium 40.4 76 0.0026 25.8 7.0 54 226-280 69-126 (234)
334 1sqs_A Conserved hypothetical 40.4 14 0.00048 30.8 2.4 49 64-112 23-89 (242)
335 3uif_A Sulfonate ABC transport 40.4 1.2E+02 0.004 26.1 8.7 140 65-238 35-176 (348)
336 3lkb_A Probable branched-chain 40.3 1.1E+02 0.0038 26.6 8.6 83 49-134 142-230 (392)
337 3iwt_A 178AA long hypothetical 40.3 21 0.00071 28.4 3.3 49 62-114 42-93 (178)
338 3eul_A Possible nitrate/nitrit 40.0 1.1E+02 0.0036 22.4 9.1 115 47-174 12-132 (152)
339 2fwm_X 2,3-dihydro-2,3-dihydro 39.9 83 0.0029 25.8 7.3 33 47-79 4-37 (250)
340 2ywj_A Glutamine amidotransfer 39.9 52 0.0018 25.9 5.7 76 51-144 1-84 (186)
341 3tb6_A Arabinose metabolism tr 39.9 27 0.00091 29.2 4.2 72 65-136 158-238 (298)
342 3ib6_A Uncharacterized protein 39.8 52 0.0018 25.7 5.7 94 58-160 35-143 (189)
343 4eyg_A Twin-arginine transloca 39.6 67 0.0023 27.6 6.9 93 50-144 139-240 (368)
344 3sg0_A Extracellular ligand-bi 39.6 61 0.0021 28.0 6.7 149 91-251 79-238 (386)
345 3t7c_A Carveol dehydrogenase; 39.6 34 0.0012 29.2 4.9 81 42-123 20-113 (299)
346 2wsb_A Galactitol dehydrogenas 39.4 87 0.003 25.4 7.3 70 47-123 8-82 (254)
347 2nv0_A Glutamine amidotransfer 39.4 45 0.0015 26.5 5.3 74 51-139 2-83 (196)
348 3rih_A Short chain dehydrogena 39.3 1.2E+02 0.0042 25.7 8.5 74 46-123 37-115 (293)
349 4fs3_A Enoyl-[acyl-carrier-pro 39.3 52 0.0018 27.5 5.9 71 177-249 5-82 (256)
350 2ekl_A D-3-phosphoglycerate de 39.2 1.9E+02 0.0065 25.0 14.1 165 49-239 4-207 (313)
351 3ucx_A Short chain dehydrogena 39.2 38 0.0013 28.2 5.1 78 43-124 4-85 (264)
352 1t0b_A THUA-like protein; treh 39.0 48 0.0017 28.0 5.6 63 64-137 36-106 (252)
353 3gv0_A Transcriptional regulat 39.0 29 0.001 29.1 4.3 87 50-138 127-227 (288)
354 3hs3_A Ribose operon repressor 38.8 40 0.0014 28.0 5.2 85 50-137 122-216 (277)
355 2h1q_A Hypothetical protein; Z 38.8 76 0.0026 27.3 6.9 93 177-276 140-236 (270)
356 1ykg_A SIR-FP, sulfite reducta 38.8 29 0.00099 27.0 4.0 73 52-135 13-100 (167)
357 3pk0_A Short-chain dehydrogena 38.8 83 0.0028 26.1 7.2 73 47-123 7-84 (262)
358 3ngx_A Bifunctional protein fo 38.8 30 0.001 30.0 4.3 69 162-238 134-203 (276)
359 1p77_A Shikimate 5-dehydrogena 38.6 95 0.0032 26.2 7.6 122 66-213 21-151 (272)
360 1xq1_A Putative tropinone redu 38.6 1.1E+02 0.0037 25.2 7.8 33 47-79 11-44 (266)
361 3he8_A Ribose-5-phosphate isom 38.6 1.3E+02 0.0043 23.5 7.5 111 51-173 1-121 (149)
362 1qv9_A F420-dependent methylen 38.6 32 0.0011 29.3 4.2 53 228-283 64-124 (283)
363 3f6p_A Transcriptional regulat 38.5 99 0.0034 21.6 10.7 108 50-173 2-115 (120)
364 3sx2_A Putative 3-ketoacyl-(ac 38.5 35 0.0012 28.7 4.7 35 45-79 8-43 (278)
365 3d7l_A LIN1944 protein; APC893 38.2 56 0.0019 25.6 5.7 59 51-110 4-66 (202)
366 1d4a_A DT-diaphorase, quinone 38.2 18 0.00061 31.0 2.8 57 192-248 24-120 (273)
367 2bkw_A Alanine-glyoxylate amin 38.2 36 0.0012 29.5 4.9 75 49-124 85-166 (385)
368 3ksm_A ABC-type sugar transpor 38.1 34 0.0012 28.1 4.5 86 51-138 128-224 (276)
369 3ilh_A Two component response 37.9 1.1E+02 0.0037 21.9 9.2 114 49-175 8-137 (146)
370 1y1p_A ARII, aldehyde reductas 37.6 43 0.0015 28.6 5.2 38 42-79 3-41 (342)
371 3fvw_A Putative NAD(P)H-depend 37.4 27 0.00093 28.0 3.6 61 51-112 3-77 (192)
372 3sxp_A ADP-L-glycero-D-mannohe 37.2 1.2E+02 0.0042 26.1 8.3 34 46-79 6-42 (362)
373 3svt_A Short-chain type dehydr 37.1 37 0.0013 28.6 4.6 77 43-123 4-87 (281)
374 3i09_A Periplasmic branched-ch 37.0 1.7E+02 0.0059 25.1 9.2 140 101-251 70-219 (375)
375 2fzv_A Putative arsenical resi 36.9 25 0.00084 30.5 3.4 62 50-112 58-133 (279)
376 3ix1_A N-formyl-4-amino-5-amin 36.8 33 0.0011 29.0 4.3 66 42-113 98-165 (302)
377 1o5i_A 3-oxoacyl-(acyl carrier 36.7 38 0.0013 28.0 4.6 36 44-79 13-49 (249)
378 3tzq_B Short-chain type dehydr 36.7 39 0.0013 28.4 4.7 75 43-123 4-81 (271)
379 1p9l_A Dihydrodipicolinate red 36.7 1.9E+02 0.0064 24.2 9.2 65 51-124 1-68 (245)
380 4da9_A Short-chain dehydrogena 36.6 43 0.0015 28.4 5.0 101 26-135 11-116 (280)
381 3tnl_A Shikimate dehydrogenase 36.5 60 0.0021 28.5 6.0 30 46-75 150-179 (315)
382 1t5b_A Acyl carrier protein ph 36.4 42 0.0014 26.5 4.6 57 192-248 24-113 (201)
383 1czn_A Flavodoxin; FMN binding 36.2 27 0.00092 27.0 3.4 37 99-135 43-87 (169)
384 3ftp_A 3-oxoacyl-[acyl-carrier 36.1 38 0.0013 28.6 4.5 77 43-123 21-101 (270)
385 4iin_A 3-ketoacyl-acyl carrier 36.1 38 0.0013 28.4 4.5 74 46-123 25-103 (271)
386 4hs4_A Chromate reductase; tri 36.0 38 0.0013 27.5 4.3 84 50-134 6-115 (199)
387 2q9u_A A-type flavoprotein; fl 36.0 66 0.0023 28.7 6.4 79 50-135 256-348 (414)
388 1k66_A Phytochrome response re 35.9 1.2E+02 0.004 21.7 9.2 113 48-173 4-134 (149)
389 3ej6_A Catalase-3; heme, hydro 35.8 1.8E+02 0.0063 28.5 9.7 90 46-145 533-646 (688)
390 3k5i_A Phosphoribosyl-aminoimi 35.7 2.4E+02 0.0081 25.1 10.4 34 47-80 21-54 (403)
391 1xrs_B D-lysine 5,6-aminomutas 35.7 98 0.0033 26.5 7.0 109 163-277 105-239 (262)
392 1ycg_A Nitric oxide reductase; 35.7 40 0.0014 29.9 4.8 65 64-135 271-342 (398)
393 3uve_A Carveol dehydrogenase ( 35.3 43 0.0015 28.2 4.8 37 43-79 4-41 (286)
394 1t0b_A THUA-like protein; treh 35.2 1.3E+02 0.0045 25.2 7.8 63 192-263 36-106 (252)
395 1obo_A Flavodoxin; electron tr 35.1 30 0.001 26.7 3.5 38 99-136 43-88 (169)
396 3l4e_A Uncharacterized peptida 35.1 61 0.0021 26.5 5.5 72 47-126 24-102 (206)
397 2gk4_A Conserved hypothetical 35.1 39 0.0013 28.5 4.3 31 49-79 2-49 (232)
398 2z9v_A Aspartate aminotransfer 35.1 35 0.0012 29.8 4.3 75 49-124 82-163 (392)
399 3p0r_A Azoreductase; structura 35.1 68 0.0023 26.0 5.8 69 180-248 6-119 (211)
400 2c2x_A Methylenetetrahydrofola 35.0 61 0.0021 28.1 5.6 160 52-237 36-212 (281)
401 3qk7_A Transcriptional regulat 34.8 84 0.0029 26.2 6.6 26 101-126 186-211 (294)
402 2j48_A Two-component sensor ki 34.8 1E+02 0.0036 20.7 8.6 108 50-174 1-115 (119)
403 3uif_A Sulfonate ABC transport 34.7 26 0.00087 30.6 3.3 65 42-111 111-175 (348)
404 4e6p_A Probable sorbitol dehyd 34.7 44 0.0015 27.7 4.7 72 46-124 4-79 (259)
405 3to5_A CHEY homolog; alpha(5)b 34.7 1.4E+02 0.0048 22.2 8.9 102 103-216 13-119 (134)
406 2dri_A D-ribose-binding protei 34.6 48 0.0016 27.4 4.9 70 64-137 144-217 (271)
407 1ys7_A Transcriptional regulat 34.6 1.3E+02 0.0044 23.8 7.5 110 49-173 6-121 (233)
408 1d4a_A DT-diaphorase, quinone 34.5 24 0.00082 30.2 3.0 34 51-84 3-44 (273)
409 1e6u_A GDP-fucose synthetase; 34.5 32 0.0011 29.2 3.9 61 50-111 3-64 (321)
410 3m3p_A Glutamine amido transfe 34.5 50 0.0017 27.9 5.0 53 178-237 3-57 (250)
411 3dhn_A NAD-dependent epimerase 34.1 1.7E+02 0.0059 23.0 10.2 59 50-111 4-76 (227)
412 1k68_A Phytochrome response re 34.0 1.2E+02 0.0042 21.3 10.7 113 50-173 2-127 (140)
413 1d2f_A MALY protein; aminotran 33.9 1.3E+02 0.0046 26.0 8.0 62 49-113 110-173 (390)
414 3tsc_A Putative oxidoreductase 33.9 45 0.0016 28.0 4.7 37 43-79 4-41 (277)
415 2xok_G ATP synthase subunit ga 33.8 40 0.0014 29.7 4.3 41 103-145 105-155 (311)
416 3ha2_A NADPH-quinone reductase 33.6 36 0.0012 27.2 3.7 55 51-111 1-60 (177)
417 3kke_A LACI family transcripti 33.5 66 0.0023 27.0 5.7 75 63-137 151-235 (303)
418 3i45_A Twin-arginine transloca 33.5 1.3E+02 0.0044 26.1 7.8 161 102-272 73-245 (387)
419 3dqp_A Oxidoreductase YLBE; al 33.5 1.6E+02 0.0054 23.2 7.9 81 51-136 1-106 (219)
420 1req_A Methylmalonyl-COA mutas 33.4 1E+02 0.0036 30.4 7.6 97 178-280 596-707 (727)
421 4egb_A DTDP-glucose 4,6-dehydr 33.2 47 0.0016 28.6 4.8 30 49-78 23-55 (346)
422 4e3z_A Putative oxidoreductase 33.1 1E+02 0.0036 25.5 6.9 72 48-123 24-100 (272)
423 3h7a_A Short chain dehydrogena 33.1 45 0.0016 27.6 4.5 75 46-124 3-81 (252)
424 3ly1_A Putative histidinol-pho 33.0 64 0.0022 27.6 5.6 62 49-113 91-152 (354)
425 3gyb_A Transcriptional regulat 32.8 90 0.0031 25.6 6.4 88 50-138 118-215 (280)
426 1ka9_H Imidazole glycerol phos 32.8 94 0.0032 24.7 6.3 49 51-114 3-52 (200)
427 2x26_A Periplasmic aliphatic s 32.8 63 0.0021 27.2 5.4 66 45-115 100-165 (308)
428 3pzy_A MOG; ssgcid, seattle st 32.7 47 0.0016 26.1 4.2 49 61-114 28-78 (164)
429 2pd6_A Estradiol 17-beta-dehyd 32.6 55 0.0019 26.9 5.0 34 46-79 3-37 (264)
430 1kgs_A DRRD, DNA binding respo 32.4 1.8E+02 0.0061 22.8 11.1 109 50-173 2-116 (225)
431 3nkl_A UDP-D-quinovosamine 4-d 32.3 1.5E+02 0.005 21.7 7.0 23 178-200 4-26 (141)
432 3o74_A Fructose transport syst 32.0 36 0.0012 27.9 3.7 35 102-136 180-216 (272)
433 2xw6_A MGS, methylglyoxal synt 31.8 71 0.0024 24.4 4.9 88 128-249 31-124 (134)
434 8abp_A L-arabinose-binding pro 31.8 80 0.0027 26.3 5.9 74 63-138 153-235 (306)
435 2pke_A Haloacid delahogenase-l 31.7 55 0.0019 26.5 4.7 50 103-158 154-206 (251)
436 3is3_A 17BETA-hydroxysteroid d 31.7 56 0.0019 27.3 4.9 75 45-123 13-92 (270)
437 3dii_A Short-chain dehydrogena 31.7 1.4E+02 0.0048 24.3 7.4 67 50-123 2-71 (247)
438 3jte_A Response regulator rece 31.5 1.4E+02 0.0048 21.3 11.7 110 50-173 3-119 (143)
439 3nra_A Aspartate aminotransfer 31.4 1.1E+02 0.0037 26.6 7.0 61 49-113 125-190 (407)
440 1nff_A Putative oxidoreductase 31.4 56 0.0019 27.1 4.8 71 46-123 3-77 (260)
441 2wm8_A MDP-1, magnesium-depend 31.2 94 0.0032 24.1 5.9 37 163-202 72-108 (187)
442 3rfq_A Pterin-4-alpha-carbinol 31.2 46 0.0016 26.9 4.0 50 61-114 50-101 (185)
443 3lop_A Substrate binding perip 31.1 1.2E+02 0.0041 26.0 7.2 82 50-134 141-228 (364)
444 1c7n_A Cystalysin; transferase 31.0 1.8E+02 0.0062 25.2 8.4 73 49-124 112-196 (399)
445 3nnk_A Ureidoglycine-glyoxylat 31.0 33 0.0011 30.1 3.4 62 49-112 87-148 (411)
446 3rot_A ABC sugar transporter, 30.8 54 0.0018 27.5 4.6 72 63-139 150-229 (297)
447 1kjq_A GART 2, phosphoribosylg 30.7 99 0.0034 27.2 6.6 74 49-123 10-95 (391)
448 3td9_A Branched chain amino ac 30.7 1.2E+02 0.004 26.0 7.0 81 49-133 148-235 (366)
449 2fn9_A Ribose ABC transporter, 30.7 41 0.0014 28.0 3.8 43 93-135 182-224 (290)
450 3h5l_A Putative branched-chain 30.6 1.5E+02 0.0053 26.0 7.9 81 177-260 163-252 (419)
451 3imf_A Short chain dehydrogena 30.5 52 0.0018 27.3 4.4 73 46-123 2-79 (257)
452 2pjk_A 178AA long hypothetical 30.5 58 0.002 26.0 4.5 49 62-114 42-93 (178)
453 2v25_A Major cell-binding fact 30.5 1.2E+02 0.0041 24.0 6.6 60 46-112 144-203 (259)
454 3n75_A LDC, lysine decarboxyla 30.5 1.3E+02 0.0044 29.7 7.8 78 52-138 3-86 (715)
455 4dim_A Phosphoribosylglycinami 30.4 1.7E+02 0.0057 25.8 8.1 77 48-125 5-95 (403)
456 3nhm_A Response regulator; pro 30.4 1.4E+02 0.0048 20.9 7.0 108 50-173 4-118 (133)
457 4h15_A Short chain alcohol deh 30.4 53 0.0018 27.8 4.5 67 47-124 8-75 (261)
458 3nyw_A Putative oxidoreductase 30.3 44 0.0015 27.7 3.9 74 46-123 3-83 (250)
459 3get_A Histidinol-phosphate am 30.0 27 0.00092 30.3 2.6 60 49-113 105-164 (365)
460 2ew8_A (S)-1-phenylethanol deh 30.0 60 0.0021 26.7 4.7 72 46-123 3-78 (249)
461 1iy8_A Levodione reductase; ox 29.8 58 0.002 27.1 4.6 74 46-123 9-88 (267)
462 3p19_A BFPVVD8, putative blue 29.7 57 0.002 27.3 4.6 71 44-123 10-83 (266)
463 3gnl_A Uncharacterized protein 29.6 99 0.0034 26.0 6.0 29 178-206 117-145 (244)
464 1zem_A Xylitol dehydrogenase; 29.5 61 0.0021 26.9 4.7 73 46-123 3-80 (262)
465 3ek2_A Enoyl-(acyl-carrier-pro 29.5 77 0.0026 26.1 5.4 28 177-204 13-43 (271)
466 3kjx_A Transcriptional regulat 29.4 56 0.0019 28.1 4.6 32 95-126 240-271 (344)
467 3brq_A HTH-type transcriptiona 29.4 87 0.003 25.8 5.7 74 64-137 160-238 (296)
468 2z61_A Probable aspartate amin 29.2 81 0.0028 27.2 5.7 54 49-113 112-165 (370)
469 1sb8_A WBPP; epimerase, 4-epim 29.1 1.3E+02 0.0045 25.7 7.1 33 47-79 24-57 (352)
470 3lkv_A Uncharacterized conserv 29.1 1.1E+02 0.0037 26.0 6.3 56 190-248 26-89 (302)
471 1vjo_A Alanine--glyoxylate ami 29.0 46 0.0016 29.1 4.0 62 49-112 108-169 (393)
472 1nyt_A Shikimate 5-dehydrogena 29.0 1E+02 0.0034 26.0 6.0 116 66-204 21-145 (271)
473 3i28_A Epoxide hydrolase 2; ar 28.9 3.1E+02 0.011 24.4 11.3 144 60-209 103-293 (555)
474 3en0_A Cyanophycinase; serine 28.9 50 0.0017 28.7 4.1 69 178-249 56-130 (291)
475 1dbw_A Transcriptional regulat 28.9 1.5E+02 0.005 20.6 11.8 109 50-173 3-117 (126)
476 2dr1_A PH1308 protein, 386AA l 28.8 2.5E+02 0.0085 23.9 8.9 33 177-209 94-126 (386)
477 2dwc_A PH0318, 433AA long hypo 28.7 1.1E+02 0.0038 27.5 6.6 74 50-124 19-104 (433)
478 1ag9_A Flavodoxin; electron tr 28.7 48 0.0016 25.9 3.7 37 100-136 43-87 (175)
479 3vtz_A Glucose 1-dehydrogenase 28.7 59 0.002 27.2 4.5 34 46-79 10-44 (269)
480 3s5p_A Ribose 5-phosphate isom 28.7 2.2E+02 0.0075 22.6 8.3 89 182-275 24-123 (166)
481 4gud_A Imidazole glycerol phos 28.5 1.3E+02 0.0045 23.9 6.5 58 51-123 3-61 (211)
482 3glv_A Lipopolysaccharide core 28.5 1.9E+02 0.0064 21.7 8.4 71 61-137 17-94 (143)
483 1gz6_A Estradiol 17 beta-dehyd 28.5 1.4E+02 0.0047 25.7 7.0 77 47-123 6-88 (319)
484 3c3k_A Alanine racemase; struc 28.3 1.3E+02 0.0045 24.8 6.7 25 102-126 184-208 (285)
485 3ctm_A Carbonyl reductase; alc 28.2 94 0.0032 25.8 5.7 73 47-123 31-107 (279)
486 3ffh_A Histidinol-phosphate am 28.1 55 0.0019 28.2 4.3 60 49-113 107-166 (363)
487 1vl8_A Gluconate 5-dehydrogena 28.0 68 0.0023 26.8 4.8 73 46-123 17-95 (267)
488 3ai3_A NADPH-sorbose reductase 28.0 72 0.0025 26.3 4.9 74 46-123 3-81 (263)
489 2ch1_A 3-hydroxykynurenine tra 28.0 40 0.0014 29.4 3.4 62 49-112 92-153 (396)
490 4e5v_A Putative THUA-like prot 27.9 87 0.003 26.9 5.5 77 178-262 4-94 (281)
491 2pnf_A 3-oxoacyl-[acyl-carrier 27.9 68 0.0023 26.0 4.7 74 46-123 3-81 (248)
492 1y5e_A Molybdenum cofactor bio 27.9 54 0.0018 25.8 3.8 50 61-114 32-84 (169)
493 3cs3_A Sugar-binding transcrip 27.8 65 0.0022 26.6 4.6 60 64-126 139-201 (277)
494 3gaf_A 7-alpha-hydroxysteroid 27.8 57 0.0019 27.1 4.2 75 45-124 7-86 (256)
495 1tvm_A PTS system, galactitol- 27.8 1.2E+02 0.0042 22.0 5.6 57 47-113 18-80 (113)
496 3grk_A Enoyl-(acyl-carrier-pro 27.8 77 0.0026 26.9 5.2 75 46-124 27-106 (293)
497 2zki_A 199AA long hypothetical 27.7 26 0.00088 27.9 1.9 55 192-247 23-96 (199)
498 3t6k_A Response regulator rece 27.7 1.7E+02 0.0057 20.9 10.0 110 50-173 4-120 (136)
499 3kax_A Aminotransferase, class 27.7 1.4E+02 0.0049 25.5 7.0 61 49-113 105-167 (383)
500 3vps_A TUNA, NAD-dependent epi 27.7 61 0.0021 27.3 4.5 33 47-79 4-37 (321)
No 1
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=100.00 E-value=5.1e-46 Score=329.57 Aligned_cols=235 Identities=18% Similarity=0.166 Sum_probs=206.5
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC
Q 023179 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~ 125 (286)
.||.|++||||||..++..+.+.|+++|++++.+|+|++++.++...+.+.+..+..||||||||++||++|++.+...+
T Consensus 2 ~~L~g~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~ 81 (254)
T 4es6_A 2 SHMSGWRLLLTRPDEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYW 81 (254)
T ss_dssp ----CCEEEECSCHHHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEeCChHHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999999999999999999987777888887788999999999999999999988766
Q ss_pred CC--CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc--c-CCCCCCEEEEEcCCCChhHHHHHHHhC
Q 023179 126 TP--NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--K-NGKKKCTVLYPASAKASNEIEEGLSNR 200 (286)
Q Consensus 126 ~~--~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~--~-~~~~~~rvL~~~g~~~~~~L~~~L~~~ 200 (286)
.+ +.+++|||++|+++|+++ |+.++++|+.+++++|++.|. . ....+++||++||+.+++.|.+.|+++
T Consensus 82 ~~~~~~~i~aVG~~Ta~~L~~~------G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg~~~r~~L~~~L~~~ 155 (254)
T 4es6_A 82 PQPPQQTWCSVGAATAAILEAY------GLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQ 155 (254)
T ss_dssp SSCCSCEEEESSHHHHHHHHHH------TCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEECSSCCCHHHHHHHHT
T ss_pred CCcccCEEEEECHHHHHHHHHc------CCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcCCccHHHHHHHHHHC
Confidence 53 589999999999999999 999999998899999998886 3 234679999999999999999999999
Q ss_pred CCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEEEEeChHHHHHHHHHhccc--cCCCceEEEeCHHHHHHHHHcCCCeE
Q 023179 201 GFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSWVNLISDT--EQWSNSVACIGETTASAAKRLGLKNV 276 (286)
Q Consensus 201 G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~IvftS~sav~~~~~~~~~~--~~~~~~iv~IG~~Ta~~l~~~G~~~v 276 (286)
|++|.++++|++++.+...+.+.+. .+.+|+|+|||++++++|++.++.. ...+.+++|||++|+++++++|++++
T Consensus 156 G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~~~l~~~~~~aIG~~Ta~~l~~~G~~~~ 235 (254)
T 4es6_A 156 GVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQNLYQLAAADWPEIGRLPLFVPSPRVAEMARELGAQRV 235 (254)
T ss_dssp TCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCSHHHHHHHHHHHGGGHHHHTTSCEEESSHHHHHHHHHTTCSSE
T ss_pred CCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHHhhHHHHHHhCCeEEEECHHHHHHHHHcCCCce
Confidence 9999999999999988765544332 3689999999999999999998753 12368999999999999999999999
Q ss_pred EeCCCCCCCC
Q 023179 277 YYPTHPGLEG 286 (286)
Q Consensus 277 ~~~~~ps~eg 286 (286)
++|++|+.+|
T Consensus 236 ~~a~~~~~~~ 245 (254)
T 4es6_A 236 IDCRGASAPA 245 (254)
T ss_dssp EECSSSSHHH
T ss_pred EECCCCCHHH
Confidence 9999998764
No 2
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=100.00 E-value=2.6e-45 Score=330.65 Aligned_cols=241 Identities=17% Similarity=0.113 Sum_probs=195.6
Q ss_pred CCCCCCCCccccccccccccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCc
Q 023179 25 NRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIF 103 (286)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~-~~~ 103 (286)
-+.-+.+++|||. +||.|++|||||+.. ++.+.+.|+++|++++.+|+|++++. +.+.+.+.++.+ +.|
T Consensus 16 ~~~~~~~~~w~e~--------~pL~G~~VlvtR~~~-~~~l~~~L~~~G~~v~~~P~i~i~~~-~~~~l~~~l~~l~~~~ 85 (286)
T 3d8t_A 16 LGLDSTENLYFQG--------IDPFTMRIAYAGLRR-KEEFKALAEKLGFTPLLFPVQATEKV-PVPEYRDQVRELAQGV 85 (286)
T ss_dssp -------------------------CCEEEECCSSC-HHHHHHHHHHHTCEEEECCCEEEEEE-ECTTHHHHHHHHTTCC
T ss_pred hhccCccCccccC--------CCCCCCEEEEeCCCc-hHHHHHHHHHCCCeEEEeeeEEEecC-CHHHHHHHHHhhccCC
Confidence 3456789999999 999999999999997 99999999999999999999999987 556677777666 479
Q ss_pred cEEEEeCHHHHHHHHHHHHHcCCC------CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCC
Q 023179 104 DWIIITSPEAGSVFLEAWKEAGTP------NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKK 177 (286)
Q Consensus 104 d~IvFTS~~av~~~~~~l~~~~~~------~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~ 177 (286)
|||||||++||++|++.+.+.+.+ +.+++|||++|+++|+++ |+.++++| .+++++|++.|.+
T Consensus 86 d~lifTS~naV~~~~~~l~~~~~~~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~~~~p-~~~~e~L~~~l~~---- 154 (286)
T 3d8t_A 86 DLFLATTGVGVRDLLEAGKALGLDLEGPLAKAFRLARGAKAARALKEA------GLPPHAVG-DGTSKSLLPLLPQ---- 154 (286)
T ss_dssp SEEEECCHHHHHHHHHHHHHTTCCCHHHHHHSEEEESSHHHHHHHHHT------TCCCSEEC-SSSGGGGGGGCCC----
T ss_pred CEEEEECHHHHHHHHHHHHHcCchHHHHhcCCeEEEECHHHHHHHHHc------CCCccccc-cccHHHHHHHHHc----
Confidence 999999999999999998876654 689999999999999999 99999999 8999999998865
Q ss_pred CC-EEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeChHHHHHHHHHhcccc---
Q 023179 178 KC-TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE--- 251 (286)
Q Consensus 178 ~~-rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS~sav~~~~~~~~~~~--- 251 (286)
|+ +||++||+.+++.|.+.|+++|++|.++++|++++.....+++.+.+ +.+|+|+|||++++++|++.++..+
T Consensus 155 g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~FtS~~~v~~~~~~~~~~~~~~ 234 (286)
T 3d8t_A 155 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAVLRGEVDALAFVAAIQVEFLFEGAKDPKALR 234 (286)
T ss_dssp CCSEEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHHCSCHHHHH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHHHcCCCCEEEEECHHHHHHHHHHHHhccchh
Confidence 68 99999999999999999999999999999999995432223333322 6799999999999999999886521
Q ss_pred --CC-CceEEEeCHHHHHHHHHcCCCeEEeCCCCCCCC
Q 023179 252 --QW-SNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 286 (286)
Q Consensus 252 --~~-~~~iv~IG~~Ta~~l~~~G~~~v~~~~~ps~eg 286 (286)
.. +.+++|||++|+++++++|++++++|++|+.+|
T Consensus 235 ~~l~~~~~i~aIG~~TA~al~~~G~~~~~~a~~~~~~~ 272 (286)
T 3d8t_A 235 EALNTRVKALAVGRVTADALREWGVKPFYVDETERLGS 272 (286)
T ss_dssp HHHTTTSEEEEESHHHHHHHHHTTCCCSEEECSSCHHH
T ss_pred hHhhcCCEEEEECHHHHHHHHHcCCCceEEeCCCCHHH
Confidence 23 678999999999999999999999999998653
No 3
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=100.00 E-value=2.7e-45 Score=327.84 Aligned_cols=235 Identities=20% Similarity=0.188 Sum_probs=199.5
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC
Q 023179 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~ 125 (286)
-...|++||||||.+++..+.+.|+++|++++.+|++++++.++...+.+.+..+..||||||||++||+.|++.+...+
T Consensus 10 ~~~~g~~IlvTRp~~~a~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~naV~~~~~~l~~~~ 89 (269)
T 3re1_A 10 MDMSAWRLLLTRPAEESAALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPAARLAIELIDEVW 89 (269)
T ss_dssp ---CCCEEEECSCHHHHHHHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHHHHHHHHHHHHHC
T ss_pred cccCCCEEEEeCChHHHHHHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhC
Confidence 56789999999999999999999999999999999999999887667888887788999999999999999999988766
Q ss_pred CC--CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc--c-CCCCCCEEEEEcCCCChhHHHHHHHhC
Q 023179 126 TP--NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--K-NGKKKCTVLYPASAKASNEIEEGLSNR 200 (286)
Q Consensus 126 ~~--~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~--~-~~~~~~rvL~~~g~~~~~~L~~~L~~~ 200 (286)
.+ +.+++|||++|+++|+++ |+.++++|+++++++|++.+. . ....++|||++||+.+++.|.+.|+++
T Consensus 90 ~~~~~~~i~aVG~~Ta~aL~~~------G~~~~~~~~~~~~e~L~~~l~l~~~~~~~g~~vLi~rg~~~r~~L~~~L~~~ 163 (269)
T 3re1_A 90 PQPPMQPWFSVGSATGQILLDY------GLDASWPEQGDDSEALLDHPRLKQAIAVPGSRVLIMRGNEGRELLAEQLRER 163 (269)
T ss_dssp SSCCCSCEEESSHHHHHHHHHT------TCCEECC-------CGGGCHHHHHHHCSSSCEEEEEECSSCCCHHHHHHHHT
T ss_pred CCcccCEEEEECHHHHHHHHHc------CCCcccCCCCCCHHHHHHhhhhcccccCCCCEEEEEccCccHHHHHHHHHHC
Confidence 53 589999999999999999 999999988889999998876 3 234679999999999999999999999
Q ss_pred CCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEEEEeChHHHHHHHHHhccc--cCCCceEEEeCHHHHHHHHHcCCCeE
Q 023179 201 GFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPSAVRSWVNLISDT--EQWSNSVACIGETTASAAKRLGLKNV 276 (286)
Q Consensus 201 G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~IvftS~sav~~~~~~~~~~--~~~~~~iv~IG~~Ta~~l~~~G~~~v 276 (286)
|++|.++++|++++.+...+...+. .+.+|+|+|||++++++|++.++.. ...+.+++|||++|+++++++|++++
T Consensus 164 G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~~~l~~~~~~aIG~~Ta~~l~~~G~~~~ 243 (269)
T 3re1_A 164 GVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSGQGFEHLLQLAGDSWPDLAGLPLFVPSPRVASLAQAAGARNV 243 (269)
T ss_dssp TCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSHHHHTTTHHHHGGGHHHHTTSCEEESSHHHHHHHHHHTCSSE
T ss_pred CCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCHHHHHHHHHHhhHHHHHHhCCeEEEECHHHHHHHHHCCCCce
Confidence 9999999999999987654433322 2689999999999999999998753 12368999999999999999999999
Q ss_pred EeCCCCCCCC
Q 023179 277 YYPTHPGLEG 286 (286)
Q Consensus 277 ~~~~~ps~eg 286 (286)
++|++|+.+|
T Consensus 244 ~va~~~t~~~ 253 (269)
T 3re1_A 244 IDCRGASAAA 253 (269)
T ss_dssp EECSSSSHHH
T ss_pred EECCCCCHHH
Confidence 9999998764
No 4
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=100.00 E-value=2.5e-44 Score=316.05 Aligned_cols=227 Identities=19% Similarity=0.208 Sum_probs=196.7
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCc
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~ 129 (286)
||+||||||..+++.+.+.|+++|++++.+|++++++.++.+. .+..+..||||||||++||++|++.+.. .+.+.
T Consensus 1 G~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~---~~~~l~~~d~viftS~~aV~~~~~~l~~-~l~~~ 76 (240)
T 3mw8_A 1 GMKLLLTRPEGKNAAMASALDALAIPYLVEPLLSVEAAAVTQA---QLDELSRADILIFISTSAVSFATPWLKD-QWPKA 76 (240)
T ss_dssp CCCEEECSCTTSCHHHHHHHHHHTCCEEECCSCEEEECCCCHH---HHHHHTTCSEEEECSHHHHHHHHHHHTT-CCCSS
T ss_pred CCEEEEeCChHHhHHHHHHHHHCCCcEEEeCcEEEeccccHHH---HHHHhcCCCEEEEECHHHHHHHHHHHHh-hCcCC
Confidence 7999999999999999999999999999999999999875443 3334578999999999999999998753 35679
Q ss_pred EEEEEChhhHHHHHHhhhccCCCCceeccCCCC-CHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEE
Q 023179 130 RIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (286)
Q Consensus 130 ~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~-~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~ 208 (286)
+++|||++|+++|+++ |+.++++|+++ ++++|++.+......|++||++||+.+++.|.+.|+++|++|++++
T Consensus 77 ~~~aVG~~Ta~~L~~~------G~~~~~~p~~~~~~e~L~~~~~~~~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~ 150 (240)
T 3mw8_A 77 TYYAVGDATADALALQ------GITAERSPADSQATEGLLTLPSLEQVSGKQIVIVRGKGGREAMADGLRLRGANVSYLE 150 (240)
T ss_dssp EEEESSHHHHHHHHHT------TCCCEECC---CCGGGGGGCGGGTCCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEE
T ss_pred eEEEECHHHHHHHHHc------CCCCccCCCCcCCHHHHHHhhhhccCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEE
Confidence 9999999999999999 99999999887 9999998776544578999999999999999999999999999999
Q ss_pred eeeeecCCCCcHHHHHHc--CCCCEEEEeChHHHHHHHHHhcccc---CCCceEEEeCHHHHHHHHHcCCCeEEeCCCCC
Q 023179 209 TYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE---QWSNSVACIGETTASAAKRLGLKNVYYPTHPG 283 (286)
Q Consensus 209 vY~~~~~~~~~~~~~~~~--~~~d~IvftS~sav~~~~~~~~~~~---~~~~~iv~IG~~Ta~~l~~~G~~~v~~~~~ps 283 (286)
+|++++.+...+...+.+ +.+|+|+|||++++++|++.++... ..+.+++|||++|+++++++|++++++|++|+
T Consensus 151 ~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~~~~~~l~~~~~~aiG~~ta~~l~~~G~~~~~va~~p~ 230 (240)
T 3mw8_A 151 VYQRACPPLDAPASVSRWQSFGIDTIVVTSGEVLENLINLVPKDSFAWLRDCHIIVPSARVETQARKKGLRRVTNAGAAN 230 (240)
T ss_dssp EEEEECCCCCHHHHHHHHHHHTCCEEECCSHHHHHHHHHHSCGGGHHHHHHSEEEESSHHHHHHHHHTTCCCEEECSSSS
T ss_pred EEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHHcchHHHHHHhCCCEEEECHHHHHHHHHcCCCceEeCCCCC
Confidence 999999887665544332 5899999999999999999987642 12588999999999999999999999999998
Q ss_pred CCC
Q 023179 284 LEG 286 (286)
Q Consensus 284 ~eg 286 (286)
.+|
T Consensus 231 ~~~ 233 (240)
T 3mw8_A 231 QAA 233 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 5
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=100.00 E-value=2.3e-43 Score=313.30 Aligned_cols=228 Identities=19% Similarity=0.145 Sum_probs=195.6
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEEEeCHHHHHHHHHHHHHc
Q 023179 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITSPEAGSVFLEAWKEA 124 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~-~~~d~IvFTS~~av~~~~~~l~~~ 124 (286)
+||.|++|||||+.. ++.+.+.|+++|++++++|+|++++. +.+.+...++++ +.||||||||+++|++|++.+.+.
T Consensus 4 ~~l~g~~vlvtr~~~-~~~l~~~L~~~G~~~~~~P~i~i~~~-~~~~l~~~~~~l~~~~d~iiftS~~aV~~~~~~l~~~ 81 (261)
T 1wcw_A 4 LEEDAVRVAYAGLRR-KEAFKALAEKLGFTPLLFPVQATEKV-PVPEYRDQVRALAQGVDLFLATTGVGVRDLLEAGKAL 81 (261)
T ss_dssp ----CCEEEECCSTT-HHHHHHHHHHTTCEEEECCCEEEEEC-CGGGGHHHHHHHHTCCSEEEECCHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCc-hHHHHHHHHHCCCcEEEeccEEEecC-CHHHHHHHHHhhccCCCEEEEeCHHHHHHHHHHHHHh
Confidence 799999999999997 99999999999999999999999998 666677777666 579999999999999999998876
Q ss_pred CCC------CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCC-EEEEEcCCCChhHHHHHH
Q 023179 125 GTP------NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKC-TVLYPASAKASNEIEEGL 197 (286)
Q Consensus 125 ~~~------~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~-rvL~~~g~~~~~~L~~~L 197 (286)
+.+ +.+++|||++|+++|+++ |+.++++| .+++++|++.|.+ |+ +||++||+.+++.|.+.|
T Consensus 82 ~~~~~~~l~~~~i~avG~~Ta~~l~~~------G~~~~~~p-~~~~e~L~~~l~~----g~~~vL~~r~~~~~~~L~~~L 150 (261)
T 1wcw_A 82 GLDLEGPLAKAFRLARGAKAARALKEA------GLPPHAVG-DGTSKSLLPLLPQ----GRGVAALQLYGKPLPLLENAL 150 (261)
T ss_dssp TCCCHHHHHHSEEEESSHHHHHHHHHT------TCCCSEEC-SSSHHHHGGGSCC----CCEEEEEECCSSCCHHHHHHH
T ss_pred CchHHHHhcCCeEEEECHHHHHHHHHc------CCCCCccc-CccHHHHHHHHHc----CCceEEEEccCcccHHHHHHH
Confidence 544 589999999999999999 99999999 8999999998865 68 999999999999999999
Q ss_pred HhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeChHHHHHHHHHhcccc-----CC-CceEEEeCHHHHHHHH
Q 023179 198 SNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWVNLISDTE-----QW-SNSVACIGETTASAAK 269 (286)
Q Consensus 198 ~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS~sav~~~~~~~~~~~-----~~-~~~iv~IG~~Ta~~l~ 269 (286)
+++|++|.++++|++++.....++..+.+ +.+|+|+|||++++++|++.++..+ .. +.+++|||++|+++++
T Consensus 151 ~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~~~v~~~~~~~~~~~~~~~~l~~~~~~~aIG~~Ta~~l~ 230 (261)
T 1wcw_A 151 AERGYRVLPLMPYRHLPDPEGILRLEEALLRGEVDALAFVAAIQVEFLFEGAKDPKALREALNTRVKALAVGRVTADALR 230 (261)
T ss_dssp HHTTEEEEEECSEEEEECHHHHHHHHHHHHHTCCSEEEECSHHHHHHHHHHCSCHHHHHHHHHHTSEEEEESHHHHHHHH
T ss_pred HHCCCEEEEEeeEEEecCCccHHHHHHHHHcCCCCEEEEECHHHHHHHHHHHhhccchhHHhhcCCEEEEECHHHHHHHH
Confidence 99999999999999995432223333322 6899999999999999999886521 23 5789999999999999
Q ss_pred HcCCCeEEeCCCCCCCC
Q 023179 270 RLGLKNVYYPTHPGLEG 286 (286)
Q Consensus 270 ~~G~~~v~~~~~ps~eg 286 (286)
++|++++++|++|+.+|
T Consensus 231 ~~G~~~~~~a~~~~~~~ 247 (261)
T 1wcw_A 231 EWGVKPFYVDETERLGS 247 (261)
T ss_dssp HTTCCCSEEECSCCHHH
T ss_pred HcCCCCceecCCCCHHH
Confidence 99999999999998653
No 6
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=100.00 E-value=3.3e-43 Score=316.87 Aligned_cols=237 Identities=18% Similarity=0.215 Sum_probs=197.8
Q ss_pred cccCCCCCCCeEEEeCCC-Cch---HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHH
Q 023179 42 TSASASNSNPKVVVTRER-GKN---GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVF 117 (286)
Q Consensus 42 ~~~~~~l~g~~VLitR~~-~~~---~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~ 117 (286)
+|-..+|.|++|||||+. +++ +.+.+.|+++|++++.+|++++++.+ .+.+.+.+..+..||||||||+|||++|
T Consensus 13 ~~~~~~l~g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~-~~~l~~~l~~~~~~d~lifTS~naV~~~ 91 (286)
T 1jr2_A 13 SSGHIEGRHMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLS-LPSFSEKLSHPEDYGGLIFTSPRAVEAA 91 (286)
T ss_dssp ---------CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECC-HHHHHHHHTCGGGCSEEEECCHHHHHHH
T ss_pred cccchhhcCCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCC-HHHHHHHHhCcccccEEEEeCHHHHHHH
Confidence 455689999999999997 777 99999999999999999999999864 3567777766688999999999999999
Q ss_pred HHHHHHcCC------------CCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEc
Q 023179 118 LEAWKEAGT------------PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPA 185 (286)
Q Consensus 118 ~~~l~~~~~------------~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~ 185 (286)
++.+.+.+. .+.+++|||++|+++|+++ |+.+ ++|+.+++++|++.|......+++||++|
T Consensus 92 ~~~l~~~~~~~~~~~d~~~~l~~~~i~aVG~~Ta~aL~~~------G~~~-~~p~~~~ae~L~~~l~~~~~~g~~vLi~r 164 (286)
T 1jr2_A 92 ELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKI------GLDT-EGETCGNAEKLAEYICSRESSALPLLFPC 164 (286)
T ss_dssp HHHHHHTTCHHHHHHHTHHHHHHSEEEECSHHHHHHHHHT------TCCC-SCCSCSSHHHHHHHHHTSCCCSSCEEEEE
T ss_pred HHHHHhccccccchhhHHHHhccCcEEEECHHHHHHHHHc------CCCc-CCCCccCHHHHHHHHHhcccCCCeEEEEC
Confidence 998776543 3689999999999999999 9988 77888999999999987655678999999
Q ss_pred CCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH---cCCCCEEEEeChHHHHHHHHHhccc---cCCCceEEE
Q 023179 186 SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ---ALSIPVVAVASPSAVRSWVNLISDT---EQWSNSVAC 259 (286)
Q Consensus 186 g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~---~~~~d~IvftS~sav~~~~~~~~~~---~~~~~~iv~ 259 (286)
|+.+++.|.+.|+++|++|.++++|++++.+...+.+.+. .+.+|+|+|||++++++|++.++.. ...+.+++|
T Consensus 165 g~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~~f~~~~~~~~~~~l~~~~i~a 244 (286)
T 1jr2_A 165 GNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAA 244 (286)
T ss_dssp SCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHGGGGGGSEEEE
T ss_pred ChhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHHHHHHHHhhhccccccCCEEEE
Confidence 9999999999999999999999999999877544333222 2689999999999999999988652 123688999
Q ss_pred eCHHHHHHHHHcCCCeEEeCCCCCCCC
Q 023179 260 IGETTASAAKRLGLKNVYYPTHPGLEG 286 (286)
Q Consensus 260 IG~~Ta~~l~~~G~~~v~~~~~ps~eg 286 (286)
||++|+++++++|++++++|+.|+.+|
T Consensus 245 IG~~Ta~~l~~~G~~~~~va~~~~~~~ 271 (286)
T 1jr2_A 245 IGPTTARALAAQGLPVSCTAESPTPQA 271 (286)
T ss_dssp SSHHHHHHHHHTTCCCSEECSSSSHHH
T ss_pred ECHHHHHHHHHcCCCceEecCCCCHHH
Confidence 999999999999999999999998653
No 7
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=100.00 E-value=7.5e-36 Score=260.71 Aligned_cols=194 Identities=22% Similarity=0.234 Sum_probs=158.6
Q ss_pred cEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC----CCCcEEEEEChhhHHHHHHhhhccC
Q 023179 75 DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG----TPNVRIGVVGAGTASIFEEVIQSSK 150 (286)
Q Consensus 75 ~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~----~~~~~i~aVG~~Ta~~L~~~~~~~~ 150 (286)
.++.+|++++++.++. .+++.||||||||+|||++|++.+.+.+ +.+.+++|||++|+++|+++
T Consensus 17 ~~~~~Pll~I~~~~~~-------~~l~~~d~lifTS~naV~~~~~~l~~~~~~~~l~~~~i~aVG~~Ta~aL~~~----- 84 (229)
T 3p9z_A 17 PYKTLILNEFCYYPLE-------LDPTPFNALIFTSKNAVFSLLETLKNSPKLKMLQNIPAYALSEPTAKTLQDH----- 84 (229)
T ss_dssp TSEEECCEEEEECCCC-------SCCTTCSEEEESCHHHHHHHHHHTTTCHHHHHHHTSCEEESSHHHHHHHHHT-----
T ss_pred CceeeceeeEEecccc-------CCcCcCCEEEEECHHHHHHHHHHHHhccchHHHcCCcEEEECHHHHHHHHHc-----
Confidence 6889999999998752 2578999999999999999998765322 34789999999999999999
Q ss_pred CCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCC
Q 023179 151 CSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALS 228 (286)
Q Consensus 151 ~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~ 228 (286)
|+.++++|+.+++++|++.|.+.. .|+|||++||+.+++.|.+.|+++|++|.++++|++++.+... ...+. .+.
T Consensus 85 -G~~~~~~p~~~~~e~L~~~l~~~~-~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~-~~~~~l~~~~ 161 (229)
T 3p9z_A 85 -HFKVAFMGEKAHGKEFVQEIFPLL-EKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTL-SEQNALKPKE 161 (229)
T ss_dssp -TCCBCCCCC---------CCHHHH-TTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCH-HHHHHHSCCT
T ss_pred -CCCeeecCCcccHHHHHHHHHhhC-CCCEEEEECCccchHHHHHHHHHCCCeEEEEEEEEeeCCCccH-HHHHHHhcCC
Confidence 999999998899999999887633 5789999999999999999999999999999999999988654 33333 368
Q ss_pred CCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeEEeCCCCCCCC
Q 023179 229 IPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPTHPGLEG 286 (286)
Q Consensus 229 ~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v~~~~~ps~eg 286 (286)
+|+|+|||++++++|++.++. ..+.+++|||++|+++++++|++. .+|++|+.||
T Consensus 162 ~d~v~ftS~s~v~~~~~~~~~--~~~~~~~aIG~~Ta~~l~~~G~~v-~va~~~~~e~ 216 (229)
T 3p9z_A 162 KSILIFTAISHAKAFLHYFEF--LENYTAISIGNTTALYLQEQGIPS-YIAKKPSLEA 216 (229)
T ss_dssp TCEEEECSHHHHHHHHHHSCC--CTTCEEEESSHHHHHHHHHTTCCE-EECSSSSHHH
T ss_pred CeEEEEECHHHHHHHHHHhCc--ccCCEEEEECHHHHHHHHHcCCCc-eeCCCCCHHH
Confidence 999999999999999998853 236889999999999999999985 5899998764
No 8
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=99.69 E-value=1.2e-16 Score=138.85 Aligned_cols=117 Identities=16% Similarity=0.059 Sum_probs=102.6
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC
Q 023179 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP 127 (286)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~ 127 (286)
+.|++||++|+....+.|.+.|+++|++|..+|+|++.+.++...+.+.+ ..+.+|+|+|||+++|+.|++.+. +..
T Consensus 108 ~~~~~vL~~rg~~~~~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~--~~~ 184 (229)
T 3p9z_A 108 LEKKSVLYLRAKEIVSSLDTILLEHGIDFKQAVVYENKLKHLTLSEQNAL-KPKEKSILIFTAISHAKAFLHYFE--FLE 184 (229)
T ss_dssp HTTCEEEEEEESSCSSCHHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHH-SCCTTCEEEECSHHHHHHHHHHSC--CCT
T ss_pred CCCCEEEEECCccchHHHHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHH-hcCCCeEEEEECHHHHHHHHHHhC--ccc
Confidence 35899999999999999999999999999999999999887555555556 467899999999999999998763 356
Q ss_pred CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC
Q 023179 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (286)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~ 174 (286)
+.+++|||+.|+++|+++ |++++ ++++++.++|++.+.+.
T Consensus 185 ~~~~~aIG~~Ta~~l~~~------G~~v~-va~~~~~e~ll~~l~~l 224 (229)
T 3p9z_A 185 NYTAISIGNTTALYLQEQ------GIPSY-IAKKPSLEACLELALSL 224 (229)
T ss_dssp TCEEEESSHHHHHHHHHT------TCCEE-ECSSSSHHHHHHHHHHT
T ss_pred CCEEEEECHHHHHHHHHc------CCCce-eCCCCCHHHHHHHHHHH
Confidence 899999999999999999 99974 78899999999988765
No 9
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=99.68 E-value=1.1e-16 Score=143.41 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=105.3
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCch-HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc--
Q 023179 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTD-RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-- 124 (286)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~-~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~-- 124 (286)
..|++||++|+....+.|.+.|+++|++|..+|+|++.+.++.. .+.+.+...+.+|+|+|||+++|+.|++.+...
T Consensus 155 ~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~~d~v~ftS~~~v~~f~~~~~~~~~ 234 (286)
T 1jr2_A 155 SSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGNLNSYYSQQGVPASITFFSPSGLTYSLKHIQELSG 234 (286)
T ss_dssp CCSSCEEEEESCGGGCCHHHHHHTTTCCEEEEECEEEEECTTHHHHHHHHHHHHCSCSEEEESSHHHHHHHHHHHHHHHG
T ss_pred cCCCeEEEECChhhHHHHHHHHHHCCCeeEEEEEEEEeeCCCcHHHHHHHHHhCCCCCEEEEEChHHHHHHHHHHhhhcc
Confidence 45899999999999999999999999999999999999876533 455555334679999999999999999988652
Q ss_pred -CCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC
Q 023179 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (286)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~ 175 (286)
++.+++++|||+.|+++|+++ |+.++++|+.++.++|++.|.+..
T Consensus 235 ~~l~~~~i~aIG~~Ta~~l~~~------G~~~~~va~~~~~~~ll~al~~~~ 280 (286)
T 1jr2_A 235 DNIDQIKFAAIGPTTARALAAQ------GLPVSCTAESPTPQALATGIRKAL 280 (286)
T ss_dssp GGGGGSEEEESSHHHHHHHHHT------TCCCSEECSSSSHHHHHHHHHHHT
T ss_pred ccccCCEEEEECHHHHHHHHHc------CCCceEecCCCCHHHHHHHHHHHH
Confidence 345789999999999999999 999988899999999999987654
No 10
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=99.66 E-value=1.2e-16 Score=142.03 Aligned_cols=122 Identities=13% Similarity=0.126 Sum_probs=106.0
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-
Q 023179 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (286)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~- 124 (286)
.+.|++||++|+....+.|.+.|+++|++|..+|+|++++.+. .+.+.+.+ ..+.+|+|+|||+++|+.|++.+.+.
T Consensus 138 ~~~g~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~~~~ 216 (269)
T 3re1_A 138 AVPGSRVLIMRGNEGRELLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRV-EVERLNGLVVSSGQGFEHLLQLAGDSW 216 (269)
T ss_dssp CSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHH-HHTTCCEEECSSHHHHTTTHHHHGGGH
T ss_pred cCCCCEEEEEccCccHHHHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHH-HcCCCCEEEEcCHHHHHHHHHHhhHHH
Confidence 4568999999999999999999999999999999999998763 34455555 34679999999999999999987543
Q ss_pred -CCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC
Q 023179 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (286)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~ 175 (286)
.+.+.+++|||+.|+++++++ |+.++++++.++.++|++.|.+..
T Consensus 217 ~~l~~~~~~aIG~~Ta~~l~~~------G~~~~~va~~~t~~~l~~al~~~~ 262 (269)
T 3re1_A 217 PDLAGLPLFVPSPRVASLAQAA------GARNVIDCRGASAAALLAALRDQP 262 (269)
T ss_dssp HHHTTSCEEESSHHHHHHHHHH------TCSSEEECSSSSHHHHHHHHHHSC
T ss_pred HHHhCCeEEEECHHHHHHHHHC------CCCceEECCCCCHHHHHHHHHHHh
Confidence 345889999999999999999 999999899999999999998765
No 11
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=99.66 E-value=3e-16 Score=138.22 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=104.8
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-
Q 023179 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA- 124 (286)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~- 124 (286)
...|++||++|+....+.|.+.|+++|++|..+++|++.+.++ .+.+.+.+ ..+.+|+|+|||+++|+.|++.+...
T Consensus 130 ~~~~~~vL~~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~~~~ 208 (254)
T 4es6_A 130 RVHDPKVLIMRGEGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARV-RAERLNGLVVSSGQGLQNLYQLAAADW 208 (254)
T ss_dssp CSSSCEEEEEECSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHH-HHTTCCEEECCSHHHHHHHHHHHGGGH
T ss_pred cCCCCEEEEEcCCccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHH-HhCCCCEEEEcCHHHHHHHHHHhhHHH
Confidence 4568999999999999999999999999999999999998764 34565666 34689999999999999999987643
Q ss_pred -CCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 125 -GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 125 -~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
++.+.+++|||+.|+++++++ |+.++++++.++.++|++.|.+
T Consensus 209 ~~l~~~~~~aIG~~Ta~~l~~~------G~~~~~~a~~~~~~~l~~ai~~ 252 (254)
T 4es6_A 209 PEIGRLPLFVPSPRVAEMAREL------GAQRVIDCRGASAPALLAALTS 252 (254)
T ss_dssp HHHTTSCEEESSHHHHHHHHHT------TCSSEEECSSSSHHHHHHHHHH
T ss_pred HHHhCCeEEEECHHHHHHHHHc------CCCceEECCCCCHHHHHHHHHh
Confidence 245889999999999999999 9999998999999999988854
No 12
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=99.63 E-value=3.2e-16 Score=138.39 Aligned_cols=118 Identities=18% Similarity=0.124 Sum_probs=98.8
Q ss_pred CC-eEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc---
Q 023179 50 NP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA--- 124 (286)
Q Consensus 50 g~-~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~--- 124 (286)
|+ +||++|+....+.|.+.|+++|++|..+|+|++.+..+ .+.+.+.+ ..+.+|+|+|||+++|+.|++.+.+.
T Consensus 130 g~~~vL~~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~~~v~~~~~~~~~~~~~ 208 (261)
T 1wcw_A 130 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAL-LRGEVDALAFVAAIQVEFLFEGAKDPKAL 208 (261)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHTTEEEEEECSEEEEECHHHHHHHHHHH-HHTCCSEEEECSHHHHHHHHHHCSCHHHH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEeeEEEecCCccHHHHHHHH-HcCCCCEEEEECHHHHHHHHHHHhhccch
Confidence 88 99999999999999999999999999999999996432 13333344 23679999999999999999876321
Q ss_pred --CCC-CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC
Q 023179 125 --GTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (286)
Q Consensus 125 --~~~-~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~ 174 (286)
.+. +.+++|||+.|+++|+++ |+.++++|+.++.++|++.|.++
T Consensus 209 ~~~l~~~~~~~aIG~~Ta~~l~~~------G~~~~~~a~~~~~~~l~~~l~~~ 255 (261)
T 1wcw_A 209 REALNTRVKALAVGRVTADALREW------GVKPFYVDETERLGSLLQGFKRA 255 (261)
T ss_dssp HHHHHHTSEEEEESHHHHHHHHHT------TCCCSEEECSCCHHHHHHHHHHH
T ss_pred hHHhhcCCEEEEECHHHHHHHHHc------CCCCceecCCCCHHHHHHHHHHH
Confidence 124 689999999999999999 99998889899999999888653
No 13
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=99.62 E-value=8e-16 Score=137.94 Aligned_cols=118 Identities=17% Similarity=0.117 Sum_probs=99.5
Q ss_pred CC-eEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc---
Q 023179 50 NP-KVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA--- 124 (286)
Q Consensus 50 g~-~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~--- 124 (286)
|+ +||++|+....+.|.+.|+++|++|..+|+|++++..+ .+.+.+.+ ..+.+|+|+|||+++|+.|++.+.+.
T Consensus 155 g~~~vLi~r~~~~~~~L~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l-~~~~~d~v~FtS~~~v~~~~~~~~~~~~~ 233 (286)
T 3d8t_A 155 GRGVAALQLYGKPLPLLENALAERGYRVLPLMPYRHLPDPEGILRLEEAV-LRGEVDALAFVAAIQVEFLFEGAKDPKAL 233 (286)
T ss_dssp CCSEEEEECSSSCCHHHHHHHHHTTCEEEEECSEEEEECHHHHHHHHHHH-HTTCCSEEEESSHHHHHHHHHHCSCHHHH
T ss_pred CCceEEEEccCcccHHHHHHHHHCCCEEEEEEEEEEecCcccHHHHHHHH-HcCCCCEEEEECHHHHHHHHHHHHhccch
Confidence 88 99999999999999999999999999999999996432 23343445 34679999999999999999876431
Q ss_pred --CCC-CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC
Q 023179 125 --GTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (286)
Q Consensus 125 --~~~-~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~ 174 (286)
.+. +.+++|||+.|+++|+++ |+.++++|+.++.++|++.|.+.
T Consensus 234 ~~~l~~~~~i~aIG~~TA~al~~~------G~~~~~~a~~~~~~~L~~~l~~~ 280 (286)
T 3d8t_A 234 REALNTRVKALAVGRVTADALREW------GVKPFYVDETERLGSLLQGFKRA 280 (286)
T ss_dssp HHHHTTTSEEEEESHHHHHHHHHT------TCCCSEEECSSCHHHHHHHHHHH
T ss_pred hhHhhcCCEEEEECHHHHHHHHHc------CCCceEEeCCCCHHHHHHHHHHH
Confidence 134 789999999999999999 99998889899999999988654
No 14
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=99.62 E-value=5.4e-16 Score=135.39 Aligned_cols=119 Identities=18% Similarity=0.124 Sum_probs=101.8
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC
Q 023179 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (286)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~ 125 (286)
.+.|++||+.|+....+.|.+.|+++|++|..+++|++.+.+. .+.+.+.+ ..+.+|+|+|||+++|+.|++.+....
T Consensus 117 ~~~g~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l-~~~~~d~v~ftS~s~v~~~~~~~~~~~ 195 (240)
T 3mw8_A 117 QVSGKQIVIVRGKGGREAMADGLRLRGANVSYLEVYQRACPPLDAPASVSRW-QSFGIDTIVVTSGEVLENLINLVPKDS 195 (240)
T ss_dssp CCTTCEEEEEEESSSCCHHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHH-HHHTCCEEECCSHHHHHHHHHHSCGGG
T ss_pred cCCCCEEEEEeCCCcHHHHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHH-HhCCCCEEEEcCHHHHHHHHHHcchHH
Confidence 4679999999999999999999999999999999999998764 34455555 235799999999999999998765431
Q ss_pred ---CCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc
Q 023179 126 ---TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (286)
Q Consensus 126 ---~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~ 172 (286)
+.+.+++|||+.|+++++++ |+.++++++.++.++|++.|.
T Consensus 196 ~~~l~~~~~~aiG~~ta~~l~~~------G~~~~~va~~p~~~~ll~al~ 239 (240)
T 3mw8_A 196 FAWLRDCHIIVPSARVETQARKK------GLRRVTNAGAANQAAVLDALG 239 (240)
T ss_dssp HHHHHHSEEEESSHHHHHHHHHT------TCCCEEECSSSSHHHHHHHHT
T ss_pred HHHHhCCCEEEECHHHHHHHHHc------CCCceEeCCCCCHHHHHHHhh
Confidence 24789999999999999999 999989999999999998763
No 15
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=96.03 E-value=0.087 Score=45.45 Aligned_cols=195 Identities=10% Similarity=0.012 Sum_probs=109.5
Q ss_pred HHHHHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 63 GKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 63 ~~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
..+.+.++++ |+.+......... .+.+...+.++. ...+|.||+.... +...+++.+.+. ++++++++..
T Consensus 29 ~gi~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~---~iPvV~~~~~ 103 (304)
T 3gbv_A 29 KGIREAVTTYSDFNISANITHYDP--YDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNEL---GIPYIYIDSQ 103 (304)
T ss_dssp HHHHHHHHHTGGGCEEEEEEEECS--SCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHH---TCCEEEESSC
T ss_pred HHHHHHHHHHHhCCeEEEEEcCCC--CCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHHHC---CCeEEEEeCC
Confidence 3455566677 8888765543322 222222222222 3689999998764 344555555543 6789999864
Q ss_pred hHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEc----CCCC-------hhHHHHHHHhCCCeeE
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPA----SAKA-------SNEIEEGLSNRGFEVV 205 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~----g~~~-------~~~L~~~L~~~G~~V~ 205 (286)
.... . .+.. +... ...+..+++.|.+....++++.++. |... ..-+.+.|+++|..+.
T Consensus 104 ~~~~---~------~~~~-V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~ 173 (304)
T 3gbv_A 104 IKDA---P------PLAF-FGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACN 173 (304)
T ss_dssp CTTS---C------CSEE-EECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSE
T ss_pred CCCC---C------ceEE-EecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcE
Confidence 3210 0 1221 1121 1234555666666543347999997 4322 3346788889888887
Q ss_pred EEEeeeeecCCCCcHHHHHH----cCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHH--HHHHHHcCCC
Q 023179 206 RLNTYTTEPVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETT--ASAAKRLGLK 274 (286)
Q Consensus 206 ~~~vY~~~~~~~~~~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~T--a~~l~~~G~~ 274 (286)
...++..........+..+. -..+++|++.+-. +-..++.+.+.+..++.++.++..- .+.+. -|+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vig~d~~~~~~~~~~-~~~~ 246 (304)
T 3gbv_A 174 ILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLIGYDLLERNVTCLK-EGTV 246 (304)
T ss_dssp EEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC-THHHHHHHHHTTCCSCEEEEESCCHHHHHHHH-HTSE
T ss_pred EEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEEEeCCCHHHHHHHH-cCce
Confidence 77666554443333332222 2479999999887 5566666665443357788776443 34443 3544
No 16
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=95.97 E-value=0.014 Score=50.55 Aligned_cols=178 Identities=11% Similarity=0.042 Sum_probs=101.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (286)
.+.+.++++|+++..+..-.-. .....+.+.+ ....+|.||+.+...-...++.+.+ .+++++++|....
T Consensus 31 gi~~~a~~~g~~~~~~~~~~~~--~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~~---- 100 (288)
T 3gv0_A 31 GITEVLSTTQYHLVVTPHIHAK--DSMVPIRYIL-ETGSADGVIISKIEPNDPRVRFMTE---RNMPFVTHGRSDM---- 100 (288)
T ss_dssp HHHHHHTTSSCEEEECCBSSGG--GTTHHHHHHH-HHTCCSEEEEESCCTTCHHHHHHHH---TTCCEEEESCCCS----
T ss_pred HHHHHHHHcCCEEEEecCCcch--hHHHHHHHHH-HcCCccEEEEecCCCCcHHHHHHhh---CCCCEEEECCcCC----
Confidence 4455666789888765432211 1112333434 2367999999876544344555544 3778888886531
Q ss_pred HhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeeecCC
Q 023179 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTEPVH 216 (286)
Q Consensus 144 ~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~~~~ 216 (286)
.. ++..+..-....+..+++.|.+. ..+++.++.+.... .-+.+.|++.|..+....++.. +
T Consensus 101 ~~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~---~ 169 (288)
T 3gv0_A 101 GI------EHAFHDFDNEAYAYEAVERLAQC--GRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTI---E 169 (288)
T ss_dssp SC------CCEEEEECHHHHHHHHHHHHHHT--TCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCT---T
T ss_pred CC------CCcEEEeCcHHHHHHHHHHHHHC--CCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheecc---c
Confidence 11 22221111112345556666664 34799999887542 3466788899987654333322 2
Q ss_pred CCcH---HHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 217 HVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 217 ~~~~---~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
...+ +..++ + ..+++|++.+-..+..++..+.+.+. .++.+++++.
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~d~ 225 (288)
T 3gv0_A 170 TPLEKIRDFGQRLMQSSDRPDGIVSISGSSTIALVAGFEAAGVKIGEDVDIVSKQS 225 (288)
T ss_dssp SCHHHHHHHHHHHTTSSSCCSEEEESCHHHHHHHHHHHHTTTCCTTTSCEEEEEES
T ss_pred cchHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEEecC
Confidence 2221 12222 2 36899999998888888887776542 2466666654
No 17
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=95.89 E-value=0.023 Score=49.39 Aligned_cols=169 Identities=10% Similarity=0.069 Sum_probs=94.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
..+.+.++++|+++..+..-. ......+.+.+ ....+|.||+.+...-...++.+.+ .+++++++|...
T Consensus 30 ~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~l-~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~---- 98 (294)
T 3qk7_A 30 SWIGIELGKRGLDLLLIPDEP---GEKYQSLIHLV-ETRRVDALIVAHTQPEDFRLQYLQK---QNFPFLALGRSH---- 98 (294)
T ss_dssp HHHHHHHHHTTCEEEEEEECT---TCCCHHHHHHH-HHTCCSEEEECSCCSSCHHHHHHHH---TTCCEEEESCCC----
T ss_pred HHHHHHHHHCCCEEEEEeCCC---hhhHHHHHHHH-HcCCCCEEEEeCCCCChHHHHHHHh---CCCCEEEECCCC----
Confidence 345566778999988766421 22223444444 2357999999876533334454544 367899998752
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecC
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (286)
... ++..+..-....+...++.|.+. ..+++.++.|... ..-+.+.|++.|..+....++.....
T Consensus 99 ~~~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~ 170 (294)
T 3qk7_A 99 LPK------PYAWFDFDNHAGASLAVKRLLEL--GHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPT 170 (294)
T ss_dssp CSS------CCEEEEECHHHHHHHHHHHHHHT--TCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSS
T ss_pred CCC------CCCEEEcChHHHHHHHHHHHHHC--CCceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCC
Confidence 112 33222221112344455666654 3478999988754 23466788889987644333333211
Q ss_pred CCCcHHHHHH----cCCCCEEEEeChHHHHHHHHHhccc
Q 023179 216 HHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 216 ~~~~~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
.....+..++ -..+++|++++-..+-..+..+.+.
T Consensus 171 ~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~ 209 (294)
T 3qk7_A 171 RPGGYLAASRLLALEVPPTAIITDCNMLGDGVASALDKA 209 (294)
T ss_dssp HHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHc
Confidence 1111112222 2478999999977776666666554
No 18
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=95.77 E-value=0.035 Score=48.26 Aligned_cols=205 Identities=8% Similarity=-0.028 Sum_probs=112.1
Q ss_pred CCeEEEeCCCCch-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHH
Q 023179 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFL 118 (286)
Q Consensus 50 g~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~--av~~~~ 118 (286)
+++|.+.-+...+ ..+.+.++++|+++..+. ....+.+...+.++. ...+|.||+.+.. .....+
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~----~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG----AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTI 79 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE----CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC----CCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHH
Confidence 4565555444333 344556677898886521 111222222222221 2579999998643 234455
Q ss_pred HHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC------hhH
Q 023179 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNE 192 (286)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~ 192 (286)
+.+.+ .++++++++..... . ..+..+..-....+..+++.|.+.....+++.++.+... ..-
T Consensus 80 ~~~~~---~~iPvV~~~~~~~~----~-----~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~g 147 (305)
T 3g1w_A 80 NKAVD---AGIPIVLFDSGAPD----S-----HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTG 147 (305)
T ss_dssp HHHHH---TTCCEEEESSCCTT----S-----CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHH
T ss_pred HHHHH---CCCcEEEECCCCCC----C-----ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHH
Confidence 55554 36789999875421 1 012221111122344555666655334468999987643 234
Q ss_pred HHHHHHhCCCeeEEEEeeeeecCCCCcHHH----HHHcCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCHHH--H
Q 023179 193 IEEGLSNRGFEVVRLNTYTTEPVHHVDQTV----LKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGETT--A 265 (286)
Q Consensus 193 L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~----~~~~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~~T--a 265 (286)
+.+.|+++|..+....++..........+. ++.-..+++|++.+-..+-..++.+.+.+. .++.++.++..- .
T Consensus 148 f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~di~vig~d~~~~~~ 227 (305)
T 3g1w_A 148 FKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVRLESRAGEIQIISFDTDKGTL 227 (305)
T ss_dssp HHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCHHHH
T ss_pred HHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEECCCcchhhHHHHHHhcCCCCCeEEEEeCCCHHHH
Confidence 677888888888776665433221111112 222247899999998887777777776543 257888887643 4
Q ss_pred HHHHH
Q 023179 266 SAAKR 270 (286)
Q Consensus 266 ~~l~~ 270 (286)
..+..
T Consensus 228 ~~~~~ 232 (305)
T 3g1w_A 228 DLVDE 232 (305)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 44443
No 19
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=95.56 E-value=0.072 Score=45.92 Aligned_cols=180 Identities=9% Similarity=-0.008 Sum_probs=99.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
..+.+.++++|+++..+.. ..+.+...+.++. ...+|.||+.+.......++ .....+++++++|....
T Consensus 28 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~---~~~~~~iPvV~~~~~~~- 98 (291)
T 3egc_A 28 SGVESEARHKGYSVLLANT-----AEDIVREREAVGQFFERRVDGLILAPSEGEHDYLR---TELPKTFPIVAVNRELR- 98 (291)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCCSSCCHHHH---HSSCTTSCEEEESSCCC-
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHCCCCEEEEeCCCCChHHHH---HhhccCCCEEEEecccC-
Confidence 3455667788988875432 1122222222211 26799999988765333333 33335889999987642
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
.. ++..+..-....+..+++.|.+. ..+++.++.+... ..-+.+.|++.|..+....++...
T Consensus 99 ---~~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~ 167 (291)
T 3egc_A 99 ---IP------GCGAVLSENVRGARTAVEYLIAR--GHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGG 167 (291)
T ss_dssp ---CT------TCEEEEECHHHHHHHHHHHHHHT--TCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC--
T ss_pred ---CC------CCCEEEECcHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCC
Confidence 12 33222221122344556666654 3478999988764 234667888888776433222222
Q ss_pred cCCCCcHHHHHH----cCCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 214 PVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 214 ~~~~~~~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
.......+...+ -..+++|++.+-..+..+++.+.+.+. .++.++.++.
T Consensus 168 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 223 (291)
T 3egc_A 168 VRADNGRDGAIKVLTGADRPTALLTSSHRITEGAMQALNVLGLRYGPDVEIVSFDN 223 (291)
T ss_dssp ----CCHHHHHHHHTC-CCCSEEEESSHHHHHHHHHHHHHHTCCBTTTBEEEEESC
T ss_pred CChhHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEecC
Confidence 222222222222 247999999998888777777765542 2456666654
No 20
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=95.45 E-value=0.061 Score=46.24 Aligned_cols=191 Identities=11% Similarity=0.056 Sum_probs=103.4
Q ss_pred CCeEEEeCCCCch-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHH
Q 023179 50 NPKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFL 118 (286)
Q Consensus 50 g~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~--av~~~~ 118 (286)
.++|.+.-+...+ ..+.+.++++|+++..+.. ..+.+...+.++. ...+|.||+.... .....+
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~ 79 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA-----GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWL 79 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHH
Confidence 3455555443332 3455667788988776532 1222222222221 2579999998654 455555
Q ss_pred HHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCCh-------h
Q 023179 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------N 191 (286)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~ 191 (286)
+.+.+ .++++++++.... . ++..+..-....+..+++.|.+.....++++++.|.... .
T Consensus 80 ~~~~~---~~iPvV~~~~~~~-----~------~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~ 145 (291)
T 3l49_A 80 QKIND---AGIPLFTVDTATP-----H------AINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYD 145 (291)
T ss_dssp HHHHH---TTCCEEEESCCCT-----T------CSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHH
T ss_pred HHHHH---CCCcEEEecCCCC-----C------cCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHH
Confidence 65554 3778999987541 1 222212111223455666666621244799999876542 2
Q ss_pred HHHHHHHhC-CCeeEE-EEeeeeecCCCCcH---H----HHHHcC---CCCEEEEeChHHHHHHHHHhccccCCCceEEE
Q 023179 192 EIEEGLSNR-GFEVVR-LNTYTTEPVHHVDQ---T----VLKQAL---SIPVVAVASPSAVRSWVNLISDTEQWSNSVAC 259 (286)
Q Consensus 192 ~L~~~L~~~-G~~V~~-~~vY~~~~~~~~~~---~----~~~~~~---~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~ 259 (286)
-+.+.|++. |+++.. ..++. .....+ + +++.-. .+++|++.+-..+...+..+.+.+..++.++.
T Consensus 146 gf~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~di~vvg 222 (291)
T 3l49_A 146 QMKYVLEAFPDVKIIEPELRDV---IPNTIQSAYSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAGRTDIRTYG 222 (291)
T ss_dssp HHHHHHHTCTTEEECSSCBCCC---SSSHHHHHHHHHHHHHHHCCSTTSCCEEEESSHHHHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHHHCCCCEEEeeeccCC---CCCCHHHHHHHHHHHHHhCCCcCCcCEEEECCCchHHHHHHHHHHcCCCCeEEEE
Confidence 456778777 554211 11111 111111 1 222224 78999999988888888877765433667777
Q ss_pred eCH
Q 023179 260 IGE 262 (286)
Q Consensus 260 IG~ 262 (286)
++.
T Consensus 223 ~d~ 225 (291)
T 3l49_A 223 VDG 225 (291)
T ss_dssp EEC
T ss_pred ecC
Confidence 643
No 21
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=95.27 E-value=0.08 Score=45.53 Aligned_cols=179 Identities=12% Similarity=0.048 Sum_probs=100.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
..+.+.++++|+++..+..-.. ......+.+.+ ....+|.||+.+...-.. . +.+....+++++++|...
T Consensus 32 ~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~--~-~~~~~~~~iPvV~~~~~~---- 101 (289)
T 3g85_A 32 RGLQSKLAKQNYNYNVVICPYK--TDCLHLEKGIS-KENSFDAAIIANISNYDL--E-YLNKASLTLPIILFNRLS---- 101 (289)
T ss_dssp HHHHHHHHHTTTCSEEEEEEEC--TTCGGGCGGGS-TTTCCSEEEESSCCHHHH--H-HHHHCCCSSCEEEESCCC----
T ss_pred HHHHHHHHHcCCeEEEEecCCC--chhHHHHHHHH-hccCCCEEEEecCCcccH--H-HHHhccCCCCEEEECCCC----
Confidence 3455667788998876533221 11111122222 235799999998654331 1 222223578999999742
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecC
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (286)
- ++..+..-....+..+++.|.+. ..+++.++.+... ..-+.+.|++.|..+....++.....
T Consensus 102 --~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~ 171 (289)
T 3g85_A 102 --N------KYSSVNVDNYKMGEKASLLFAKK--RYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENS 171 (289)
T ss_dssp --S------SSEEEEECHHHHHHHHHHHHHHT--TCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSS
T ss_pred --C------CCCEEEeCHHHHHHHHHHHHHHc--CCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCC
Confidence 1 32222221123345566677664 3478999987654 23466788999987654333322111
Q ss_pred CCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeC
Q 023179 216 HHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIG 261 (286)
Q Consensus 216 ~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG 261 (286)
.....+...+ + ..+++|++++-..+...+..+.+.+. .++.+++++
T Consensus 172 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 172 IHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp HHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 1111112222 2 36899999998888878777776542 356788877
No 22
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=95.13 E-value=0.033 Score=48.00 Aligned_cols=181 Identities=6% Similarity=-0.001 Sum_probs=100.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCch---HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~---~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
..+.+.++++|+++..+..- .+.+ .+.+.+ ....+|.||+.....-...++.+.+ .++++++++....
T Consensus 33 ~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~~-~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~ 103 (292)
T 3k4h_A 33 RGISSFAHVEGYALYMSTGE-----TEEEIFNGVVKMV-QGRQIGGIILLYSRENDRIIQYLHE---QNFPFVLIGKPYD 103 (292)
T ss_dssp HHHHHHHHHTTCEEEECCCC-----SHHHHHHHHHHHH-HTTCCCEEEESCCBTTCHHHHHHHH---TTCCEEEESCCSS
T ss_pred HHHHHHHHHcCCEEEEEeCC-----CCHHHHHHHHHHH-HcCCCCEEEEeCCCCChHHHHHHHH---CCCCEEEECCCCC
Confidence 34556677889887654321 1112 122223 2368999999776544445555544 3678888886532
Q ss_pred HHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeee
Q 023179 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
.. . ++..+..-....+..+++.|.+. ..+++.++.|.... .-+.+.|++.|..+....++..
T Consensus 104 ~~---~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~ 172 (292)
T 3k4h_A 104 RK---D------EITYVDNDNYTAAREVAEYLISL--GHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHF 172 (292)
T ss_dssp CT---T------TSCEEECCHHHHHHHHHHHHHHT--TCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEEC
T ss_pred CC---C------CCCEEEECcHHHHHHHHHHHHHC--CCceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEec
Confidence 10 0 12221111112344556666664 34689999887542 3466888889987654333322
Q ss_pred ecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
........+...+ + ..+++|++++-..+...++.+.+.+. .++.+++++..
T Consensus 173 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d~~ 230 (292)
T 3k4h_A 173 DFSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNA 230 (292)
T ss_dssp CSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCC
T ss_pred CCCHHHHHHHHHHHHcCCCCCcEEEEcChHHHHHHHHHHHHhCCCCCCeEEEEEecCc
Confidence 1111111112222 2 37899999998888777777766542 35667777643
No 23
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=95.06 E-value=0.24 Score=43.94 Aligned_cols=204 Identities=12% Similarity=0.026 Sum_probs=106.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCH-HHHHHHHHHHHHcCCCCcEEEEEChhh
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSP-EAGSVFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~~~~~d~IvFTS~-~av~~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
.+.+.++++|+++..+.. ..+.+ .++..+..-..+|.||++.. .....+++.+. ..++++++++...
T Consensus 25 g~~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~---~~giPvV~~~~~~ 96 (350)
T 3h75_A 25 FMQAAARDLGLDLRILYA-----ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQ---GSGIKLFIVNSPL 96 (350)
T ss_dssp HHHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHT---TSCCEEEEEESCC
T ss_pred HHHHHHHHcCCeEEEEEC-----CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHH---hCCCcEEEEcCCC
Confidence 345566678988876521 12222 23334411148999999862 33444444433 3588999988654
Q ss_pred HHHHHHhhhccCC----CCceecc-CC-CCCHHHHHHhcccCC----CCC-CEEEEEcCCCC-------hhHHHHHHHhC
Q 023179 139 ASIFEEVIQSSKC----SLDVAFS-PS-KATGKILASELPKNG----KKK-CTVLYPASAKA-------SNEIEEGLSNR 200 (286)
Q Consensus 139 a~~L~~~~~~~~~----G~~~~~~-~~-~~~~e~L~~~L~~~~----~~~-~rvL~~~g~~~-------~~~L~~~L~~~ 200 (286)
...-+... +.. .....++ .. ...+..+++.|.+.. ... ++++++.|... ..-+.+.|++.
T Consensus 97 ~~~~~~~~--~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~ 174 (350)
T 3h75_A 97 TLDQRELI--GQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEH 174 (350)
T ss_dssp CTTTC--------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHC
T ss_pred ChHHHhhh--cCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHC
Confidence 32211000 000 0001122 11 122344555555433 122 68999988754 33567889998
Q ss_pred CCeeEEEEeeeeecCCCCcHH----HHHHcCCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHHHHH--HHHHc
Q 023179 201 GFEVVRLNTYTTEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTAS--AAKRL 271 (286)
Q Consensus 201 G~~V~~~~vY~~~~~~~~~~~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~Ta~--~l~~~ 271 (286)
|. +....++..........+ +++.-..+++|+..+-..+...++.+.+.+. .++.++.++..... .+..-
T Consensus 175 ~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~vP~di~vvg~d~~~~~l~~~~~~ 253 (350)
T 3h75_A 175 PQ-VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRKPGTDLLFSGVNSSPEALQALIDG 253 (350)
T ss_dssp TT-EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCCHHHHHHHHHT
T ss_pred CC-eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCCCCCCeEEEecCCCHHHHHHHHcC
Confidence 86 433333332211111111 2222246899999998888777777776543 25778888654433 66665
Q ss_pred CCCeEEe
Q 023179 272 GLKNVYY 278 (286)
Q Consensus 272 G~~~v~~ 278 (286)
.+..+..
T Consensus 254 ~lttv~~ 260 (350)
T 3h75_A 254 KLSVLEA 260 (350)
T ss_dssp SSCEEEE
T ss_pred CeeEEEc
Confidence 5655443
No 24
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=94.89 E-value=0.032 Score=48.51 Aligned_cols=195 Identities=15% Similarity=0.108 Sum_probs=108.0
Q ss_pred CeEEEeCCCCch-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHH
Q 023179 51 PKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLE 119 (286)
Q Consensus 51 ~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~--av~~~~~ 119 (286)
.+|.+.-+...+ ..+.+.++++|+++..+..-.. .+.+...+.++. ...+|.||+.... +....++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~---~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~ 80 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGA---NDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQ 80 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSS---CCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCc---CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHH
Confidence 455555444332 3345566778988775442100 122222222221 2579999997653 3344555
Q ss_pred HHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hh
Q 023179 120 AWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SN 191 (286)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~ 191 (286)
.+.+. ++++++++......-... .+.. +... ...+..+++.|.+.....++++++.|... ..
T Consensus 81 ~~~~~---giPvV~~~~~~~~~~~~~------~~~~-V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~ 150 (297)
T 3rot_A 81 RANKL---NIPVIAVDTRPKDKTKNP------YLVF-LGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAY 150 (297)
T ss_dssp HHHHH---TCCEEEESCCCSCTTTSC------CSCE-EECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHH
T ss_pred HHHHC---CCCEEEEcCCCccccccC------cceE-EccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHH
Confidence 55543 678888886542100001 1211 1111 12244556666655433579999987754 34
Q ss_pred HHHHHHHhCCCeeEEEEeeeeecCCCCcH---HH----HHHcCCCCEEEEeChHHHHHHHHHhccccC----CCceEEEe
Q 023179 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQ---TV----LKQALSIPVVAVASPSAVRSWVNLISDTEQ----WSNSVACI 260 (286)
Q Consensus 192 ~L~~~L~~~G~~V~~~~vY~~~~~~~~~~---~~----~~~~~~~d~IvftS~sav~~~~~~~~~~~~----~~~~iv~I 260 (286)
-+.+.|++.|+++.... .....+ +. ++.-..+++|++.+-..+...++.+.+.+. .++.++.+
T Consensus 151 Gf~~~l~~~g~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~~dv~vig~ 224 (297)
T 3rot_A 151 GIKTILQDKGIFFEELD------VGTDPNQVQSRVKSYFKIHPETNIIFCLTSQALDPLGQMLLHPDRYDFNYQPQVYSF 224 (297)
T ss_dssp HHHHHHHHTTCEEEEEE------CCSCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHSHHHHTCCCCCEEEEE
T ss_pred HHHHHHHhcCCeEEEee------cCCChHHHHHHHHHHHHhCCCCCEEEEcCCcchHHHHHHHHhcCCccCCCceEEEEe
Confidence 56788999998875543 112211 11 222257899999998888888887776543 26888888
Q ss_pred CHHH
Q 023179 261 GETT 264 (286)
Q Consensus 261 G~~T 264 (286)
+..-
T Consensus 225 D~~~ 228 (297)
T 3rot_A 225 DKTP 228 (297)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 6533
No 25
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=94.86 E-value=0.11 Score=44.82 Aligned_cols=167 Identities=7% Similarity=0.016 Sum_probs=88.7
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++..++ . ..+.+...+.++. ...+|.||+.+...-...++.+.+ .++++++++....
T Consensus 37 gi~~~a~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 106 (289)
T 2fep_A 37 GIEDIATMYKYNIILSN---S--DQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKR---SPVPIVLAASVEE-- 106 (289)
T ss_dssp HHHHHHHHTTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHH---SSSCEEEESCCCT--
T ss_pred HHHHHHHHcCCEEEEEe---C--CCCHHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHh---cCCCEEEEccccC--
Confidence 44556678898876432 1 1222222222221 267999999764322333444443 3678999986432
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCC-C-------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~-~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
.. ++..+..-....+..+++.|.+. ..+++.++.+.. . ..-+.+.|++.|..+....++...
T Consensus 107 --~~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 176 (289)
T 2fep_A 107 --QE------ETPSVAIDYEQAIYDAVKLLVDK--GHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGD 176 (289)
T ss_dssp --TC------CSCEEECCHHHHHHHHHHHHHHT--TCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECC
T ss_pred --CC------CCCEEEECcHHHHHHHHHHHHHC--CCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCC
Confidence 12 32221111112244556666654 347899998875 3 234678899999776533233221
Q ss_pred cCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccc
Q 023179 214 PVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 214 ~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
.......+..++ + ..+++|++.+-..+...++.+.+.
T Consensus 177 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~ 217 (289)
T 2fep_A 177 YTYDSGLEALQHLMSLDKKPTAILSATDEMALGIIHAAQDQ 217 (289)
T ss_dssp SCHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCCCCEEEECCHHHHHHHHHHHHHc
Confidence 111111122222 2 368999999888776666666543
No 26
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=94.84 E-value=0.13 Score=43.80 Aligned_cols=175 Identities=10% Similarity=0.006 Sum_probs=94.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++..+. . ..+.+...+.++ ....+|.||+.+...-...++.+.+. ++++++++....
T Consensus 24 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~---~iPvV~~~~~~~-- 93 (275)
T 3d8u_A 24 SFQQALNKAGYQLLLGY---S--DYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEAS---NTPVLEIAELSS-- 93 (275)
T ss_dssp HHHHHHHHTSCEECCEE---C--TTCHHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHHHH---TCCEEEESSSCS--
T ss_pred HHHHHHHHCCCEEEEEc---C--CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHhC---CCCEEEEeeccC--
Confidence 44566778898765432 1 122222122221 13678999987653323344444442 678888886431
Q ss_pred HHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
.. ++.. +... ...+..+++.|.+. ..+++.++.+... ..-+.+.|+++|..+....++..
T Consensus 94 --~~------~~~~-V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~- 161 (275)
T 3d8u_A 94 --KA------SYLN-IGVDHFEVGKACTRHLIEQ--GFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHE- 161 (275)
T ss_dssp --SS------SSEE-ECBCHHHHHHHHHHHHHTT--TCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSS-
T ss_pred --CC------CCCE-EEEChHHHHHHHHHHHHHC--CCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeC-
Confidence 11 2221 1111 12244456666654 3478999988643 23466788889987654433321
Q ss_pred cCCCCcH---HHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 214 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 214 ~~~~~~~---~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
+...+ +..++ + ..+++|++++-..+..+++.+.+.+. .++.++.++.
T Consensus 162 --~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 218 (275)
T 3d8u_A 162 --APSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEG 218 (275)
T ss_dssp --CCCHHHHHHHHHHHHTTCTTCCEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEESSC
T ss_pred --CCChhHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEecCC
Confidence 22222 12222 2 35899999998877777777665432 2455666654
No 27
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=94.81 E-value=0.096 Score=45.25 Aligned_cols=167 Identities=10% Similarity=0.048 Sum_probs=93.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
..+.+.++++|+++..+..- ...+.....+.+ ....+|.||+.+...-...++.+.+ +++++++|....
T Consensus 31 ~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~~~~----~iPvV~i~~~~~--- 99 (289)
T 3k9c_A 31 EQIYAAATRRGYDVMLSAVA---PSRAEKVAVQAL-MRERCEAAILLGTRFDTDELGALAD----RVPALVVARASG--- 99 (289)
T ss_dssp HHHHHHHHHTTCEEEEEEEB---TTBCHHHHHHHH-TTTTEEEEEEETCCCCHHHHHHHHT----TSCEEEESSCCS---
T ss_pred HHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHH-HhCCCCEEEEECCCCCHHHHHHHHc----CCCEEEEcCCCC---
Confidence 34556677899888765432 111112222223 2367999999875433334444432 788999987542
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeeecCC
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~~~~ 216 (286)
.. ++..+..-....+...++.|.+. ..+++.++.+... ..-+.+.|++.|..+... ++......
T Consensus 100 -~~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~-~~~~~~~~ 169 (289)
T 3k9c_A 100 -LP------GVGAVRGDDVAGITLAVDHLTEL--GHRNIAHIDGADAPGGADRRAGFLAAMDRHGLSASAT-VVTGGTTE 169 (289)
T ss_dssp -ST------TSEEEEECHHHHHHHHHHHHHHT--TCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCGGGEE-EECCCSSH
T ss_pred -CC------CCCEEEeChHHHHHHHHHHHHHC--CCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCcc-EEECCCCH
Confidence 12 33322221122344555666664 3468999988653 334678899999876553 22221111
Q ss_pred CCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccc
Q 023179 217 HVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 217 ~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
....+..++ + ..+++|++.+-..+-..++.+.+.
T Consensus 170 ~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~ 207 (289)
T 3k9c_A 170 TEGAEGMHTLLEMPTPPTAVVAFNDRCATGVLDLLVRS 207 (289)
T ss_dssp HHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCEEEECChHHHHHHHHHHHHc
Confidence 111112222 1 478999999988777777766654
No 28
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=94.68 E-value=0.13 Score=44.14 Aligned_cols=168 Identities=8% Similarity=-0.025 Sum_probs=87.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
..+.+.++++|+++..+.. ..+.+...+.++. ...+|.||+.+...-...++.+.+ ..++++++++.....
T Consensus 41 ~gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~--~~~iPvV~~~~~~~~ 113 (296)
T 3brq_A 41 FHAARMAEEKGRQLLLADG-----KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIID--AHSQPIMVLNRRLRK 113 (296)
T ss_dssp HHHHHHHHHTTCEEEEECC-----TTSHHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHHH--TCSSCEEEESCCCSS
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHh--cCCCCEEEEccccCC
Confidence 3445566788987654321 1222221222221 257999999765322223444443 136788888864311
Q ss_pred HHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
. ++.. +.... ..+..+++.|.+. ..+++.++.+... ..-+.+.|+++|.++....++..
T Consensus 114 ----~------~~~~-V~~d~~~~~~~a~~~l~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~ 180 (296)
T 3brq_A 114 ----N------SSHS-VWCDHKQTSFNAVAELINA--GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANG 180 (296)
T ss_dssp ----S------GGGE-ECCCHHHHHHHHHHHHHHT--TCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECC
T ss_pred ----C------CCCE-EEEchHHHHHHHHHHHHHC--CCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeC
Confidence 1 1111 11111 1234455666654 3478999988753 23466788888877644323322
Q ss_pred ecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccc
Q 023179 213 EPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 213 ~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
........+..+. + ..+|+|++.+-..+..++..+.+.
T Consensus 181 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~ 222 (296)
T 3brq_A 181 KWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHER 222 (296)
T ss_dssp CSSHHHHHHHHHHHHTC--CCSEEEESSHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHc
Confidence 1111101112222 2 368999999988777777666553
No 29
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=94.53 E-value=0.043 Score=47.85 Aligned_cols=178 Identities=16% Similarity=0.090 Sum_probs=98.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCch---HHHHHHhcCCCccEEEEeCHHHHHH-HHHHHHHcCCCCcEEEEEChhh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNADTIFDWIIITSPEAGSV-FLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~---~l~~~l~~~~~~d~IvFTS~~av~~-~~~~l~~~~~~~~~i~aVG~~T 138 (286)
..+.+.++++|++++.+.. . .+.+ .+.+.+ ....+|.||+.+...-.. .++.+.+ +++++++|...
T Consensus 35 ~gi~~~a~~~g~~~~~~~~---~--~~~~~~~~~~~~l-~~~~vdgiI~~~~~~~~~~~~~~l~~----~iPvV~i~~~~ 104 (303)
T 3kke_A 35 SGVQMAASGHSTDVLLGQI---D--APPRGTQQLSRLV-SEGRVDGVLLQRREDFDDDMLAAVLE----GVPAVTINSRV 104 (303)
T ss_dssp HHHHHHHHHTTCCEEEEEC---C--STTHHHHHHHHHH-HSCSSSEEEECCCTTCCHHHHHHHHT----TSCEEEESCCC
T ss_pred HHHHHHHHHCCCEEEEEeC---C--CChHHHHHHHHHH-HhCCCcEEEEecCCCCcHHHHHHHhC----CCCEEEECCcC
Confidence 3455677789999875432 1 1222 222223 246899999987654333 4444433 68899998764
Q ss_pred HHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeee
Q 023179 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~ 211 (286)
.. .. ..+..-....+...++.|.+. ..+++.++.|... ..-+.+.|++.|..+....++.
T Consensus 105 ~~---~~--------~~V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~ 171 (303)
T 3kke_A 105 PG---RV--------GSVILDDQKGGGIATEHLITL--GHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVD 171 (303)
T ss_dssp TT---CC--------CEEEECHHHHHHHHHHHHHHT--TCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEE
T ss_pred CC---CC--------CEEEECcHHHHHHHHHHHHHC--CCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEe
Confidence 32 11 111111112344455666654 3478999988754 3346678889998765333332
Q ss_pred eecCCCCcHHHHH-H-----c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 212 TEPVHHVDQTVLK-Q-----A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 212 ~~~~~~~~~~~~~-~-----~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
.........+..+ - + ..+++|++.+-..+-..+..+.+.+. .++.++.++..
T Consensus 172 ~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~ 235 (303)
T 3kke_A 172 AGWEADAGSAALNTLYRGANLGKPDGPTAVVVASVNAAVGALSTALRLGLRVPEDLSIVGINTT 235 (303)
T ss_dssp CCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCC
T ss_pred cCCChHHHHHHHHHhcchhhhcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEcCh
Confidence 2111111111122 2 2 36899999998877777777766542 24666666543
No 30
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=94.43 E-value=0.53 Score=40.28 Aligned_cols=162 Identities=12% Similarity=0.018 Sum_probs=86.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++..+. . ..+.+...+.++. ...+|.||+.....-...++.+. .++++++++.....
T Consensus 29 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~----~~iPvV~~~~~~~~- 98 (285)
T 3c3k_A 29 GIEKTAEKNGYRILLCN---T--ESDLARSRSCLTLLSGKMVDGVITMDALSELPELQNII----GAFPWVQCAEYDPL- 98 (285)
T ss_dssp HHHHHHHHTTCEEEEEE---C--TTCHHHHHHHTHHHHTTCCSEEEECCCGGGHHHHHHHH----TTSSEEEESSCCTT-
T ss_pred HHHHHHHHcCCEEEEEe---C--CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHh----cCCCEEEEccccCC-
Confidence 34556678898876432 1 1222222222221 36799999976533223344443 47889999864321
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
. ++..+..-....+..+++.|.+. ..+++.++.+... ..-+.+.|++.|..+. ++....
T Consensus 99 ---~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~~ 164 (285)
T 3c3k_A 99 ---S------TVSSVSIDDVAASEYVVDQLVKS--GKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS---RISYAE 164 (285)
T ss_dssp ---S------SSCEEECCHHHHHHHHHHHHHHT--TCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC---EEEECS
T ss_pred ---C------CCCEEEEChHHHHHHHHHHHHHc--CCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce---EeecCC
Confidence 1 22221111112234455666654 3478999988753 2346677888888765 232222
Q ss_pred CCCCcHHHHHH---c---CCCCEEEEeChHHHHHHHHHhcc
Q 023179 215 VHHVDQTVLKQ---A---LSIPVVAVASPSAVRSWVNLISD 249 (286)
Q Consensus 215 ~~~~~~~~~~~---~---~~~d~IvftS~sav~~~~~~~~~ 249 (286)
......+..+. + ..+++|++.+-..+...++.+.+
T Consensus 165 ~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~ 205 (285)
T 3c3k_A 165 NLDYMAGKLATFSLLKSAVKPDAIFAISDVLAAGAIQALTE 205 (285)
T ss_dssp SSSHHHHHHHHHHHHSSSSCCSEEEESSHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHHHH
Confidence 22211222222 2 36899999988776666666554
No 31
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=94.36 E-value=0.2 Score=43.03 Aligned_cols=169 Identities=7% Similarity=0.022 Sum_probs=89.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC-chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD-TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~-~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
..+.+.++++|+++..+.. ....+ ...+.+.+ ....+|.||+.+...-...++.+.+ .++++++++....
T Consensus 28 ~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 98 (287)
T 3bbl_A 28 SSMVREAGAVNYFVLPFPF---SEDRSQIDIYRDLI-RSGNVDGFVLSSINYNDPRVQFLLK---QKFPFVAFGRSNP-- 98 (287)
T ss_dssp HHHHHHHHHTTCEEEECCC---CSSTTCCHHHHHHH-HTTCCSEEEECSCCTTCHHHHHHHH---TTCCEEEESCCST--
T ss_pred HHHHHHHHHcCCEEEEEeC---CCchHHHHHHHHHH-HcCCCCEEEEeecCCCcHHHHHHHh---cCCCEEEECCcCC--
Confidence 3445667789998765432 11111 12233333 2467999999764322233444444 3678999986432
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
.. ++..+..-....+..+++.|.+. ..+++.++.+... ..-+.+.|++.|+.+....++....
T Consensus 99 --~~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~ 168 (287)
T 3bbl_A 99 --DW------DFAWVDIDGTAGTRQAVEYLIGR--GHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEG 168 (287)
T ss_dssp --TC------CCCEEEECHHHHHHHHHHHHHHH--TCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCS
T ss_pred --CC------CCCEEEeccHHHHHHHHHHHHHC--CCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCC
Confidence 12 32221111112244455666554 3478999987643 2346678888897664322332211
Q ss_pred CCCCcHHHHHH-cC-----CCCEEEEeChHHHHHHHHHhccc
Q 023179 215 VHHVDQTVLKQ-AL-----SIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 215 ~~~~~~~~~~~-~~-----~~d~IvftS~sav~~~~~~~~~~ 250 (286)
......+..+. +. .+++|++.+-..+..+++.+.+.
T Consensus 169 ~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~ 210 (287)
T 3bbl_A 169 TFEVGRAMTLHLLDLSPERRPTAIMTLNDTMAIGAMAAARER 210 (287)
T ss_dssp SHHHHHHHHHHHHTSCTTTSCSEEEESSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhCCCCCCcEEEECCcHHHHHHHHHHHHc
Confidence 11111111221 22 68999998888776676666543
No 32
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=93.92 E-value=0.16 Score=43.78 Aligned_cols=167 Identities=9% Similarity=0.056 Sum_probs=87.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCc-hH---HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDT-DR---LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~-~~---l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
.+.+.++++|+++..+.. ....+. .. ..+.+ ....+|.||+.+...-...++.+.+. ++++++++....
T Consensus 29 gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~l~~~---~iPvV~~~~~~~ 101 (290)
T 2rgy_A 29 QTDLELRAVHRHVVVATG---CGESTPREQALEAVRFL-IGRDCDGVVVISHDLHDEDLDELHRM---HPKMVFLNRAFD 101 (290)
T ss_dssp HHHHHHHHTTCEEEEECC---CSSSCHHHHHHHHHHHH-HHTTCSEEEECCSSSCHHHHHHHHHH---CSSEEEESSCCT
T ss_pred HHHHHHHHCCCEEEEEeC---CCchhhhhhHHHHHHHH-HhcCccEEEEecCCCCHHHHHHHhhc---CCCEEEEccccC
Confidence 445566788998764332 111111 11 22222 12579999997653223334444432 678888886432
Q ss_pred HHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeee
Q 023179 140 SIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~ 211 (286)
. . ++.. +... ...+..+++.|.+. ..+++.++.+... ..-+.+.|++.|..+....++.
T Consensus 102 ~----~------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~ 168 (290)
T 2rgy_A 102 A----L------PDAS-FCPDHRRGGELAAATLIEH--GHRKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIE 168 (290)
T ss_dssp T----S------GGGE-ECCCHHHHHHHHHHHHHHT--TCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEE
T ss_pred C----C------CCCE-EEeCcHHHHHHHHHHHHHC--CCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEEe
Confidence 1 1 1111 1111 12244455666654 3478999988753 2246678888887664332332
Q ss_pred eecCCCCcH----HHHHHcCCCCEEEEeChHHHHHHHHHhccc
Q 023179 212 TEPVHHVDQ----TVLKQALSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 212 ~~~~~~~~~----~~~~~~~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
......... ++++.-..+++|++.+-..+...+..+.+.
T Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~ 211 (290)
T 2rgy_A 169 SDFSPEGGYAATCQLLESKAPFTGLFCANDTMAVSALARFQQL 211 (290)
T ss_dssp CCSSHHHHHHHHHHHHHHTCCCSEEEESSHHHHHHHHHHHHHT
T ss_pred cCCChhHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHHc
Confidence 211111111 122222478999999888776666666543
No 33
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=93.89 E-value=0.14 Score=43.64 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=97.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
..+.+.++++|+++..+..- ......+.++..+ ...+|.|| .+...-...+.. .+++++++|....
T Consensus 25 ~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~l~--~~~vdgiI-~~~~~~~~~~~~------~~iPvV~~~~~~~--- 90 (280)
T 3gyb_A 25 QSLSDVLTPKGYRLSVIDSL--TSQAGTDPITSAL--SMRPDGII-IAQDIPDFTVPD------SLPPFVIAGTRIT--- 90 (280)
T ss_dssp HHHHHHHGGGTCEEEEECSS--SSCSSSCHHHHHH--TTCCSEEE-EESCC--------------CCCEEEESCCCS---
T ss_pred HHHHHHHHHCCCEEEEEeCC--CchHHHHHHHHHH--hCCCCEEE-ecCCCChhhHhh------cCCCEEEECCCCC---
Confidence 34556677889988876654 2211223333333 46899999 544333322222 5788999986541
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCC
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~ 217 (286)
... ++..+..-....+..+++.|.+. ..+++.++.+... ..-+.+.|++.|..+.....+ ...
T Consensus 91 ~~~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~----~~~ 158 (280)
T 3gyb_A 91 QAS------THDSVANDDFRGAEIATKHLIDL--GHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSNDYL----GPA 158 (280)
T ss_dssp SSC------STTEEEECHHHHHHHHHHHHHHT--TCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECCCC----SCC
T ss_pred CCC------CCCEEEechHHHHHHHHHHHHHC--CCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccccc----CCC
Confidence 011 22222221122345556666664 3478999998763 345668899999877543221 122
Q ss_pred CcH---H----HHHHcCCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHH
Q 023179 218 VDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGET 263 (286)
Q Consensus 218 ~~~---~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~ 263 (286)
..+ + +++.-..+++|++++-..+...++.+.+.+. .++.++.++..
T Consensus 159 ~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~ 214 (280)
T 3gyb_A 159 VEHAGYTETLALLKEHPEVTAIFSSNDITAIGALGAARELGLRVPEDLSIIGYDNT 214 (280)
T ss_dssp CHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEESCC
T ss_pred CHHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCeeEEEEECCc
Confidence 221 1 2222257999999998888777777766542 25667777643
No 34
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=93.78 E-value=1.3 Score=37.99 Aligned_cols=185 Identities=11% Similarity=0.069 Sum_probs=95.1
Q ss_pred HHHHHHHHhCCC-cEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEEChh
Q 023179 63 GKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 63 ~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
..+.+.++++|. ++..+. ...+.+...+.++. ...+|.||+..... ....++.+.+ .++++++++..
T Consensus 22 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~---~~iPvV~~~~~ 93 (309)
T 2fvy_A 22 KAIEQDAKAAPDVQLLMND-----SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARG---QNVPVVFFNKE 93 (309)
T ss_dssp HHHHHHHHTCTTEEEEEEE-----CTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHT---TTCCEEEESSC
T ss_pred HHHHHHHHhcCCeEEEEec-----CCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHHH---CCCcEEEecCC
Confidence 344566677887 654332 11222222222221 25799999976432 3344555543 46889999875
Q ss_pred hHHH-HHHhhhccCCCCceeccCC-CCCHHHHHHhcccC----------CCCCCEEEEEcCCCC-------hhHHHHHHH
Q 023179 138 TASI-FEEVIQSSKCSLDVAFSPS-KATGKILASELPKN----------GKKKCTVLYPASAKA-------SNEIEEGLS 198 (286)
Q Consensus 138 Ta~~-L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~----------~~~~~rvL~~~g~~~-------~~~L~~~L~ 198 (286)
.... +... .++.. +... ...+..+++.|.+. ....++++++.|... ..-+.+.|+
T Consensus 94 ~~~~~~~~~-----~~~~~-V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~ 167 (309)
T 2fvy_A 94 PSRKALDSY-----DKAYY-VGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELN 167 (309)
T ss_dssp CCHHHHHTC-----TTEEE-EECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHH
T ss_pred CCccccccc-----CccEE-EecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHH
Confidence 4321 1111 01111 1111 12234444555441 113357888887643 234678889
Q ss_pred hCCCeeEEEEeeeeecCCCCcHHHHHH-c---C--CCCEEEEeChHHHHHHHHHhccccCC-CceEEEeCH
Q 023179 199 NRGFEVVRLNTYTTEPVHHVDQTVLKQ-A---L--SIPVVAVASPSAVRSWVNLISDTEQW-SNSVACIGE 262 (286)
Q Consensus 199 ~~G~~V~~~~vY~~~~~~~~~~~~~~~-~---~--~~d~IvftS~sav~~~~~~~~~~~~~-~~~iv~IG~ 262 (286)
+.|..+....++..........+..+. + . .+++|++.+-..+..++..+.+.+ . ++.++.++.
T Consensus 168 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g-~~di~vig~d~ 237 (309)
T 2fvy_A 168 DKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDA 237 (309)
T ss_dssp HTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEESSHHHHHHHHHHHHHTT-CTTSCEECSBC
T ss_pred hcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEECCchhHHHHHHHHHHcC-CCCceEEecCC
Confidence 999887665444321111111112222 2 2 589999998887777777776544 3 466666643
No 35
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=93.68 E-value=0.29 Score=41.34 Aligned_cols=177 Identities=10% Similarity=0.039 Sum_probs=94.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH-HHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA-GSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~a-v~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
..+.+.++++|+++..+.. ..+.+...+.++. ...+|.||+.+... ....++.+.+ .+++++++|....
T Consensus 22 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 93 (272)
T 3o74_A 22 KQLEQGARARGYQLLIASS-----DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQD---KGLPVIAIDRRLD 93 (272)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHH---TTCCEEEESSCCC
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHH---cCCCEEEEccCCC
Confidence 3455667788998875432 1222222222211 25799999987551 1333444544 3678888886542
Q ss_pred HHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeee
Q 023179 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
.. ++..+..-....+..+++.|.+. ..+++.++.+.... .-+.+.|++.|.++.. ++..
T Consensus 94 ----~~------~~~~V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~~ 159 (272)
T 3o74_A 94 ----PA------HFCSVISDDRDASRQLAASLLSS--APRSIALIGARPELSVSQARAGGFDEALQGYTGEVRR--YQGE 159 (272)
T ss_dssp ----TT------TCEEEEECHHHHHHHHHHHHHTT--CCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEEE--EEES
T ss_pred ----cc------ccCEEEEchHHHHHHHHHHHHHC--CCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChhe--eecC
Confidence 11 22221111112344555666654 34799999876542 3466778888876532 2221
Q ss_pred ecCCCCcHH----HHHHcC-CCCEEEEeChHHHHHHHHHhccccC--CCceEEEeC
Q 023179 213 EPVHHVDQT----VLKQAL-SIPVVAVASPSAVRSWVNLISDTEQ--WSNSVACIG 261 (286)
Q Consensus 213 ~~~~~~~~~----~~~~~~-~~d~IvftS~sav~~~~~~~~~~~~--~~~~iv~IG 261 (286)
........+ +++.-. .+++|++.+-..+...+..+.+.+. .++.++.++
T Consensus 160 ~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 160 AFSRECGQRLMQQLIDDLGGLPDALVTTSYVLLQGVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCCSEEEESSHHHHHHHHHHHHTSCGGGCCCEEEEES
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcEEEEeCchHHHHHHHHHHHcCCCccceEEEEeC
Confidence 111111111 222224 6999999998887777776665432 234555554
No 36
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=93.64 E-value=0.3 Score=43.50 Aligned_cols=190 Identities=8% Similarity=0.013 Sum_probs=98.2
Q ss_pred CeEEEeCCCCch-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHH
Q 023179 51 PKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAW 121 (286)
Q Consensus 51 ~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l 121 (286)
+.|.+.-+...+ ..+.+.++++|+++..+.. ..+.+...+.++. ...+|.||+.....-...++.+
T Consensus 71 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l 145 (355)
T 3e3m_A 71 GFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT-----AYSPEREEQLVETMLRRRPEAMVLSYDGHTEQTIRLL 145 (355)
T ss_dssp CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTCCSEEEEECSCCCHHHHHHH
T ss_pred CEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHH
Confidence 345555444333 3455667788988764321 1122222222211 2578999998755433444545
Q ss_pred HHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCCh--------hH
Q 023179 122 KEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS--------NE 192 (286)
Q Consensus 122 ~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~--------~~ 192 (286)
.+ .++++++++.... .. .... +... ...+..+++.|.+. ..+++.++.+.... .-
T Consensus 146 ~~---~~iPvV~i~~~~~----~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~r~I~~i~~~~~~~~~~~~R~~G 209 (355)
T 3e3m_A 146 QR---ASIPIVEIWEKPA----HP------IGHT-VGFSNERAAYDMTNALLAR--GFRKIVFLGEKDDDWTRGAARRAG 209 (355)
T ss_dssp HH---CCSCEEEESSCCS----SC------SSEE-EECCHHHHHHHHHHHHHHT--TCCSEEEEEESSCTTSHHHHHHHH
T ss_pred Hh---CCCCEEEECCccC----CC------CCCE-EEeChHHHHHHHHHHHHHC--CCCeEEEEccCcccChhHHHHHHH
Confidence 44 3678888875321 11 1111 1122 12244455666654 34689998775432 33
Q ss_pred HHHHHHhCCCeeEE-EEeeeeecCCCCcHH----HHHHcCCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeC
Q 023179 193 IEEGLSNRGFEVVR-LNTYTTEPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIG 261 (286)
Q Consensus 193 L~~~L~~~G~~V~~-~~vY~~~~~~~~~~~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG 261 (286)
+.+.|+++|..+.. +.++..........+ +++....+++|++.+-..+-..+..+.+.+. .++.++.++
T Consensus 210 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~vP~disvigfD 286 (355)
T 3e3m_A 210 FKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFCVSDMPAFGLLSRLKSIGVAVPEQVSVVGFG 286 (355)
T ss_dssp HHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCTTTTCEEECSS
T ss_pred HHHHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 66888999987763 222221110000111 2222257999999998777666666655432 234455443
No 37
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=93.59 E-value=0.095 Score=45.61 Aligned_cols=175 Identities=9% Similarity=-0.023 Sum_probs=96.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch---HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~---~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
.+.+.++++|+++..+..- .+.+ .+.+.+ ....+|.||+.+...-...++.+.+ .+++++.+|...
T Consensus 48 gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l-~~~~vdgiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~-- 116 (305)
T 3huu_A 48 GINQACNVRGYSTRMTVSE-----NSGDLYHEVKTMI-QSKSVDGFILLYSLKDDPIEHLLNE---FKVPYLIVGKSL-- 116 (305)
T ss_dssp HHHHHHHHHTCEEEECCCS-----SHHHHHHHHHHHH-HTTCCSEEEESSCBTTCHHHHHHHH---TTCCEEEESCCC--
T ss_pred HHHHHHHHCCCEEEEEeCC-----CChHHHHHHHHHH-HhCCCCEEEEeCCcCCcHHHHHHHH---cCCCEEEECCCC--
Confidence 4455667789888754321 1111 222233 2368999999865433334454544 377899998764
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
... ++..+..-....+...++.|.+. ..+++.++.|... ..-+.+.|++.|..+.. ++...
T Consensus 117 --~~~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~--~~~~~ 184 (305)
T 3huu_A 117 --NYE------NIIHIDNDNIDAAYQLTQYLYHL--GHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC--VVIKS 184 (305)
T ss_dssp --SST------TCCEEECCHHHHHHHHHHHHHHT--TCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE--EEECS
T ss_pred --ccc------CCcEEEeCHHHHHHHHHHHHHHC--CCCeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc--EEecC
Confidence 111 23222211112344555666654 3478999987654 23466888999988776 33222
Q ss_pred cCCCCc---HHH-HHHcCCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 214 PVHHVD---QTV-LKQALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 214 ~~~~~~---~~~-~~~~~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
... .. .++ ++....+++|++.+-..+-..+..+.+.+. .++.++.++.
T Consensus 185 ~~~-~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~g~~vP~di~vig~D~ 239 (305)
T 3huu_A 185 MND-LRDFIKQYCIDASHMPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFNT 239 (305)
T ss_dssp HHH-HHHHC--------CCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESC
T ss_pred cHH-HHHHHHHhhhcCCCCCCEEEECChHHHHHHHHHHHHcCCCCCcceEEEEECC
Confidence 111 11 122 332347899999998777777777665432 2455666654
No 38
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=93.55 E-value=0.26 Score=42.25 Aligned_cols=180 Identities=10% Similarity=0.045 Sum_probs=98.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH-----HHHHHHHHHHHcCCCCcEEEEEC
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-----AGSVFLEAWKEAGTPNVRIGVVG 135 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~-----av~~~~~~l~~~~~~~~~i~aVG 135 (286)
..+.+.++++|+++..+.. ..+.+...+.++. ...+|.||+.... .....++.+.+ .++++++++
T Consensus 35 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~---~~iPvV~~~ 106 (298)
T 3tb6_A 35 RGIESYLSEQGYSMLLTST-----NNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEK---NGIPFAMIN 106 (298)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHH---TTCCEEEES
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHh---cCCCEEEEe
Confidence 3556677788998875432 1222222222221 3679999998753 22234444544 378899988
Q ss_pred hhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEe
Q 023179 136 AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 136 ~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~v 209 (286)
.... .. ++..+..-....+..+++.|.+. ..+++.++.+... ..-+.+.|+++|..+....+
T Consensus 107 ~~~~----~~------~~~~V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~ 174 (298)
T 3tb6_A 107 ASYA----EL------AAPSFTLDDVKGGMMAAEHLLSL--GHTHMMGIFKADDTQGVKRMNGFIQAHRERELFPSPDMI 174 (298)
T ss_dssp SCCT----TC------SSCEEEECHHHHHHHHHHHHHHT--TCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCCCGGGE
T ss_pred cCcC----CC------CCCEEEeCcHHHHHHHHHHHHHC--CCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCCCcceE
Confidence 6531 11 22222221122345556666664 3468888877654 23467889999887643333
Q ss_pred eeeec--CCCC-c---HHHHHHcCC--CCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 210 YTTEP--VHHV-D---QTVLKQALS--IPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 210 Y~~~~--~~~~-~---~~~~~~~~~--~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
+.... .... . .++++.... +++|++.+-..+...+..+.+.+. .++.+++++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 238 (298)
T 3tb6_A 175 VTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLKVPEDMSIVGYDD 238 (298)
T ss_dssp EEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCCTTTTCEEECSBC
T ss_pred EEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCCCCCceEEEecCC
Confidence 22211 1110 1 122322245 899999998888777777766532 2455665554
No 39
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=93.50 E-value=0.36 Score=42.48 Aligned_cols=163 Identities=9% Similarity=0.073 Sum_probs=86.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++..+. . ..+.+...+.++. ...+|.||+.+...-...++.+.+ .+++++.+|....
T Consensus 84 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~-- 153 (332)
T 2o20_A 84 GVDDIASMYKYNMILAN---S--DNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKN---SRTPVVLVGTIDG-- 153 (332)
T ss_dssp HHHHHHHHTTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEECSSCCCHHHHHHHHH---HCCCEEEESCCCT--
T ss_pred HHHHHHHHcCCEEEEEE---C--CCChHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHh---CCCCEEEEccccC--
Confidence 34455667898876532 1 1222222222221 257999999764221223444433 2678888886432
Q ss_pred HHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
.. ++.. +.... ..+..+++.|.+. ..+++.++.+... ..-+.+.|+++|..+....++..
T Consensus 154 --~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~- 221 (332)
T 2o20_A 154 --DK------EIPS-VNIDYHLAAYQSTKKLIDS--GNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEG- 221 (332)
T ss_dssp --TS------CSCE-EECCHHHHHHHHHHHHHHT--TCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECS-
T ss_pred --CC------CCCE-EEeChHHHHHHHHHHHHHC--CCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeC-
Confidence 12 3322 12221 2234455666654 3478999988753 23466788899977653223321
Q ss_pred cCCCCcH---HHHHH-c-CCCCEEEEeChHHHHHHHHHhccc
Q 023179 214 PVHHVDQ---TVLKQ-A-LSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 214 ~~~~~~~---~~~~~-~-~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
+...+ +..+. + ..+++|++.+-..+-..+..+.+.
T Consensus 222 --~~~~~~~~~~~~~ll~~~~~ai~~~~d~~A~g~~~al~~~ 261 (332)
T 2o20_A 222 --NYSYEQGKALAERLLERGATSAVVSHDTVAVGLLSAMMDK 261 (332)
T ss_dssp --CCSHHHHHHHHHHHHHTTCCEEEESCHHHHHHHHHHHHHT
T ss_pred --CCCHHHHHHHHHHHhccCCCEEEECChHHHHHHHHHHHHc
Confidence 11211 11111 1 278999999887766666665543
No 40
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=93.45 E-value=0.41 Score=42.16 Aligned_cols=167 Identities=9% Similarity=0.033 Sum_probs=88.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH-HHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~-av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
.+.+.++++|+++..+. . ..+.+...+.++. ...+|.||+.+.. ....+.+.+.+ .++++++++.....
T Consensus 84 gi~~~a~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~~ 155 (338)
T 3dbi_A 84 HAARMAEEKGRQLLLAD---G--KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDA---HSQPIMVLNRRLRK 155 (338)
T ss_dssp HHHHHHHHTTCEEEEEE---C--TTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHH---CSSCEEEESSCCSS
T ss_pred HHHHHHHHCCCEEEEEe---C--CCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHc---CCCCEEEEcCCCCC
Confidence 45566778998877543 1 1222221122211 2579999997643 22334444443 25778888865321
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
. .+..+..-....+...++.|.+. ..+++.++.|... ..-+.+.|+++|..+....++...
T Consensus 156 ----~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 223 (338)
T 3dbi_A 156 ----N------SSHSVWCDHKQTSFNAVAELINA--GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGK 223 (338)
T ss_dssp ----S------GGGEECBCHHHHHHHHHHHHHHT--TCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCC
T ss_pred ----C------CCCEEEEChHHHHHHHHHHHHHC--CCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCC
Confidence 1 11111111112244455666554 3478999988654 234677888999876543333222
Q ss_pred cCCCCcHH----HHHHcCCCCEEEEeChHHHHHHHHHhccc
Q 023179 214 PVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 214 ~~~~~~~~----~~~~~~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
.......+ +++.-..+++|++.+-..+-..++.+.+.
T Consensus 224 ~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~ 264 (338)
T 3dbi_A 224 WTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHER 264 (338)
T ss_dssp SSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEEECChHHHHHHHHHHHHc
Confidence 11111111 22222478999998887776666666554
No 41
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=93.45 E-value=0.94 Score=39.04 Aligned_cols=185 Identities=9% Similarity=0.029 Sum_probs=93.1
Q ss_pred HHHHHHHHhCCC---cEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 63 GKLIKALAKHRI---DCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 63 ~~l~~~L~~~G~---~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
..+.+.|+++|+ ++... +. ....+.+.....++. ...+|.||+++..+...+.. . ..+++++.+|..
T Consensus 21 ~gi~~~l~~~gy~g~~v~l~-~~--~~~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~----~-~~~iPvV~~~~~ 92 (295)
T 3lft_A 21 KGIQDGLAEEGYKDDQVKID-FM--NSEGDQSKVATMSKQLVANGNDLVVGIATPAAQGLAS----A-TKDLPVIMAAIT 92 (295)
T ss_dssp HHHHHHHHHTTCCGGGEEEE-EE--ECTTCHHHHHHHHHHHTTSSCSEEEEESHHHHHHHHH----H-CSSSCEEEESCS
T ss_pred HHHHHHHHHcCCCCCceEEE-Ee--cCCCCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHH----c-CCCCCEEEEecc
Confidence 345566778898 65422 11 112232333333322 36799999998766553322 1 257888888742
Q ss_pred hHHH---HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEE
Q 023179 138 TASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLN 208 (286)
Q Consensus 138 Ta~~---L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~ 208 (286)
-... .... ...+-...-+.........++.|.+.....+|+.++.+... .+.+.+.|++.|+++....
T Consensus 93 ~~~~~~~v~~~---~~~~~~~~gv~~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~ 169 (295)
T 3lft_A 93 DPIGANLVKDL---KKPGGNVTGVSDHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFA 169 (295)
T ss_dssp CTTTTTSCSCS---SCCCSSEEEEEECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChhhcCccccc---cCCCCcEEEEECCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEe
Confidence 1100 0000 00011111111122344445666554333479999877643 2456788889999887765
Q ss_pred eeeeecCCCCcHHHHHH-cCCCCEEEEeChHHHHHHHHHhcccc-CCCceEEEeCH
Q 023179 209 TYTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVRSWVNLISDTE-QWSNSVACIGE 262 (286)
Q Consensus 209 vY~~~~~~~~~~~~~~~-~~~~d~IvftS~sav~~~~~~~~~~~-~~~~~iv~IG~ 262 (286)
++.. ....+..+. +..+|+|++.+-..+-..+..+.+.. ..+++++....
T Consensus 170 ~~~~----~~~~~~~~~l~~~~dai~~~~D~~a~g~~~~l~~~~~~~~i~vig~d~ 221 (295)
T 3lft_A 170 VPST----NEIASTVTVMTSKVDAIWVPIDNTIASGFPTVVSSNQSSKKPIYPSAT 221 (295)
T ss_dssp ESSG----GGHHHHHHHHTTTCSEEEECSCHHHHHTHHHHHHHTTTTCCCEEESSH
T ss_pred cCCH----HHHHHHHHHHHhcCCEEEECCchhHHHHHHHHHHHHHHcCCCEEeCCH
Confidence 5431 122233333 36799998887555433332222211 12455665554
No 42
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=93.37 E-value=0.2 Score=42.43 Aligned_cols=180 Identities=13% Similarity=0.072 Sum_probs=99.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCC-ccEEEEeCH--HHHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTI-FDWIIITSP--EAGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~-~d~IvFTS~--~av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
..+.+.++++|+++..+..- ...+.+...+.++. ... +|.||+... ......++.+.+. +++++.++..
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~~---~ipvV~~~~~ 93 (276)
T 3ksm_A 20 LGAQKAADEAGVTLLHRSTK---DDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRAR---NIPVLVVDSD 93 (276)
T ss_dssp HHHHHHHHHHTCEEEECCCS---STTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHT---TCCEEEESSC
T ss_pred HHHHHHHHHcCCEEEEECCC---CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHC---CCcEEEEecC
Confidence 34556677889887755321 11222221122211 135 999999883 3444555655553 7789998865
Q ss_pred hHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCC--CCCEEEEEcCCCCh-------hHHHHHHHhC-CCeeEE
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGK--KKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVR 206 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~--~~~rvL~~~g~~~~-------~~L~~~L~~~-G~~V~~ 206 (286)
.. .. +....+... ...+..+++.|.+... ..+++.++.+.... .-+.+.|+++ |+++..
T Consensus 94 ~~----~~------~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~ 163 (276)
T 3ksm_A 94 LA----GD------AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIA 163 (276)
T ss_dssp CS----SS------CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred CC----CC------CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEE
Confidence 41 11 221112222 1234445566655422 34789999886542 3466778777 766542
Q ss_pred EEeeeeecCCCCcH---H----HHHHcCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCHH
Q 023179 207 LNTYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 263 (286)
Q Consensus 207 ~~vY~~~~~~~~~~---~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~~ 263 (286)
++.. ....+ + +++.-..+++|++++-..+...+..+.+.+. .++.++.++..
T Consensus 164 --~~~~---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~p~di~vig~d~~ 223 (276)
T 3ksm_A 164 --APYA---GDDRGAARSEMLRLLKETPTIDGLFTPNESTTIGALVAIRQSGMSKQFGFIGFDQT 223 (276)
T ss_dssp --CCBC---CSSHHHHHHHHHHHHHHCSCCCEEECCSHHHHHHHHHHHHHTTCTTSSEEEEESCC
T ss_pred --EecC---CCcHHHHHHHHHHHHHhCCCceEEEECCchhhhHHHHHHHHcCCCCCeEEEEeCCC
Confidence 2211 22221 1 1222247899999998888777777766543 35778888653
No 43
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=93.17 E-value=0.22 Score=42.61 Aligned_cols=165 Identities=9% Similarity=0.010 Sum_probs=86.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++.... ...+.+...+.++. ...+|.||+.+...-....+.+.+ ..++++++++....
T Consensus 28 gi~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~--~~~iPvV~~~~~~~-- 98 (289)
T 1dbq_A 28 AVEKNCFQKGYTLILGN-----AWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGEA-- 98 (289)
T ss_dssp HHHHHHHHHTCEEEEEE-----CTTCHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHH--TTTSCEEEEECSSC--
T ss_pred HHHHHHHHcCCeEEEEc-----CCCChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHh--ccCCCEEEEccCCC--
Confidence 34455667898776421 11222222222221 257999999765432223444433 24678888886431
Q ss_pred HHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
.. ++...+... ...+..+++.|.+. ..+++.++.+... ..-+.+.|+++|.++....++..
T Consensus 99 --~~------~~~~~V~~d~~~~~~~~~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~- 167 (289)
T 1dbq_A 99 --KA------DFTDAVIDNAFEGGYMAGRYLIER--GHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQG- 167 (289)
T ss_dssp --CS------SSCEEEEECHHHHHHHHHHHHHHT--TCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCC-
T ss_pred --cc------CcCCEEEeCcHHHHHHHHHHHHHC--CCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeC-
Confidence 11 211112222 12244556666654 3478999987643 23467888889876643222221
Q ss_pred cCCCCcH---HHHHH-c---CCCCEEEEeChHHHHHHHHHhccc
Q 023179 214 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 214 ~~~~~~~---~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
+...+ +..+. + ..+++|++.+-..+..++..+.+.
T Consensus 168 --~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~ 209 (289)
T 1dbq_A 168 --DFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEM 209 (289)
T ss_dssp --CSSHHHHHHHHHHHHTSSSCCSEEEESCHHHHHHHHHHHHHT
T ss_pred --CCCHHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHc
Confidence 11211 12222 2 368999999877776676666543
No 44
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=92.83 E-value=0.5 Score=40.51 Aligned_cols=176 Identities=10% Similarity=0.025 Sum_probs=89.1
Q ss_pred HHHHHHHhCCCcEEEe-ceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 64 KLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
.+.+.++++|+++... ..-. .+....+.++..+ ...+|.||+.+...-...++.+.+ .++++++++.....
T Consensus 29 gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~~l~--~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~~-- 100 (290)
T 3clk_A 29 GIQEEAHKNGYNLIIVYSGSA-DPEEQKHALLTAI--ERPVMGILLLSIALTDDNLQLLQS---SDVPYCFLSMGFDD-- 100 (290)
T ss_dssp HHHHHHHTTTCEEEEEC-----------CHHHHHH--SSCCSEEEEESCC----CHHHHHC---C--CEEEESCC--C--
T ss_pred HHHHHHHHcCCeEEEEeCCCC-CHHHHHHHHHHHH--hcCCCEEEEecccCCHHHHHHHHh---CCCCEEEEcCCCCC--
Confidence 4455667889887654 3211 1111112233333 367999999875432333444432 46789999865321
Q ss_pred HHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 143 EEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
.+.. +... ...+..+++.|.+. ..+++.++.+... ..-+.+.|++.|..+....++..
T Consensus 101 ---------~~~~-V~~D~~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~-- 166 (290)
T 3clk_A 101 ---------DRPF-ISSDDEDIGYQATNLLINE--GHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPG-- 166 (290)
T ss_dssp ---------CSCE-EECCHHHHHHHHHHHHHTT--TCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECC--
T ss_pred ---------CCCE-EEeChHHHHHHHHHHHHHc--CCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcC--
Confidence 1111 1111 12244455666654 3478999987643 23466788888876643222221
Q ss_pred CCCCcH---HHHHH-c--CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 215 VHHVDQ---TVLKQ-A--LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 215 ~~~~~~---~~~~~-~--~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
+...+ +..+. + ..+++|++++-..+..+++.+.+.+. .++.++.++.
T Consensus 167 -~~~~~~~~~~~~~~l~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 222 (290)
T 3clk_A 167 -DYSYTSGEQAMKAFGKNTDLTGIIAASDMTAIGILNQASSFGIEVPKDLSIVSIDG 222 (290)
T ss_dssp -CSSHHHHHHHHHHHCTTCCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred -CCChhhHHHHHHHHhccCCCcEEEECCcHHHHHHHHHHHHcCCCCCCceEEEEeCC
Confidence 11111 12222 2 46899999998877777777665432 2455665543
No 45
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=92.74 E-value=0.34 Score=42.65 Aligned_cols=211 Identities=15% Similarity=0.151 Sum_probs=114.4
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCC----chHHHHHHhcCCCccEEEE----eC--------
Q 023179 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD----TDRLSSVLNADTIFDWIII----TS-------- 110 (286)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~----~~~l~~~l~~~~~~d~IvF----TS-------- 110 (286)
.+.|++|++...........+.|.++|+++.....-...+... .+.+ .+.+.++|.|+. ..
T Consensus 4 ~~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~---~~~~~~~d~ii~~~~~~~~~~~i~s~ 80 (300)
T 2rir_A 4 MLTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNID---EIPFQQIDSIILPVSATTGEGVVSTV 80 (300)
T ss_dssp CCCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGG---GSCGGGCSEEECCSSCEETTTEECBS
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccch---HHHHhcCCEEEeccccccCCcccccc
Confidence 3678999999887777788999999999987542111110000 0111 112456888886 31
Q ss_pred --HHH--H-HHHHHHHHHcCCCCcEEEEEChhhH---HHHHHhhhccCCCCceeccCCCCCHHHHHHhc-----------
Q 023179 111 --PEA--G-SVFLEAWKEAGTPNVRIGVVGAGTA---SIFEEVIQSSKCSLDVAFSPSKATGKILASEL----------- 171 (286)
Q Consensus 111 --~~a--v-~~~~~~l~~~~~~~~~i~aVG~~Ta---~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L----------- 171 (286)
..- + +.+++. .++.+++++|-... +++.+. |+.+..+|.. +.-.++..+
T Consensus 81 ~a~~~~~~~~~~l~~-----~~~l~~i~~g~~~~d~~~~~~~~------gi~v~~~~~~-~~v~~~r~~~~~~g~~~~~~ 148 (300)
T 2rir_A 81 FSNEEVVLKQDHLDR-----TPAHCVIFSGISNAYLENIAAQA------KRKLVKLFER-DDIAIYNSIPTVEGTIMLAI 148 (300)
T ss_dssp SCSSCEECCHHHHHT-----SCTTCEEEESSCCHHHHHHHHHT------TCCEEEGGGS-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCccchHHHHhh-----cCCCCEEEEecCCHHHHHHHHHC------CCEEEeecCC-CceEEEcCccHHHHHHHHHH
Confidence 111 1 223332 23455566776554 466666 9988776653 211222211
Q ss_pred --ccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCC--------C---cHHHHHHcCCCCEEEEeChH
Q 023179 172 --PKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--------V---DQTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 172 --~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~--------~---~~~~~~~~~~~d~IvftS~s 238 (286)
......+++++++........+...|...|++| .+|.+.+... . .....+.+...|+|+.+.|.
T Consensus 149 ~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V---~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~ 225 (300)
T 2rir_A 149 QHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANV---KVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS 225 (300)
T ss_dssp HTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEE---EEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS
T ss_pred HhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEE---EEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh
Confidence 112236789999987666667888999999855 4454432110 0 01122224689999999885
Q ss_pred HH--HHHHHHhccccCCCceEEEeCH----HHHHHHHHcCCCeEEeC
Q 023179 239 AV--RSWVNLISDTEQWSNSVACIGE----TTASAAKRLGLKNVYYP 279 (286)
Q Consensus 239 av--~~~~~~~~~~~~~~~~iv~IG~----~Ta~~l~~~G~~~v~~~ 279 (286)
.. +..++.++. +..++-++. ...+.+++.|...+.+|
T Consensus 226 ~~i~~~~~~~mk~----g~~lin~a~g~~~~~~~~a~~~G~~~i~~p 268 (300)
T 2rir_A 226 MILNQTVLSSMTP----KTLILDLASRPGGTDFKYAEKQGIKALLAP 268 (300)
T ss_dssp CCBCHHHHTTSCT----TCEEEECSSTTCSBCHHHHHHHTCEEEECC
T ss_pred hhhCHHHHHhCCC----CCEEEEEeCCCCCcCHHHHHHCCCEEEECC
Confidence 21 112222222 233443332 11256677787655445
No 46
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=92.74 E-value=0.26 Score=42.59 Aligned_cols=176 Identities=8% Similarity=0.029 Sum_probs=94.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCch---HHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTD---RLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~---~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
..+.+.++++|++++.+..- .+.+ .+.+.+ ....+|.||+.....-...++.+.+ .+++++++|....
T Consensus 32 ~gi~~~a~~~g~~~~~~~~~-----~~~~~~~~~~~~l-~~~~vdGiI~~~~~~~~~~~~~l~~---~~iPvV~i~~~~~ 102 (295)
T 3hcw_A 32 LGISETCNQHGYGTQTTVSN-----NMNDLMDEVYKMI-KQRMVDAFILLYSKENDPIKQMLID---ESMPFIVIGKPTS 102 (295)
T ss_dssp HHHHHHHHTTTCEEEECCCC-----SHHHHHHHHHHHH-HTTCCSEEEESCCCTTCHHHHHHHH---TTCCEEEESCCCS
T ss_pred HHHHHHHHHCCCEEEEEcCC-----CChHHHHHHHHHH-HhCCcCEEEEcCcccChHHHHHHHh---CCCCEEEECCCCc
Confidence 34556677889988754321 1111 222333 2368999999865433334454544 3678999986432
Q ss_pred HHHHHhhhccCCCCceecc-CC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEee
Q 023179 140 SIFEEVIQSSKCSLDVAFS-PS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTY 210 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~-~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY 210 (286)
.. +.....+ .. ...+...++.|.+. ..+++.++.|... ..-+.+.|+++|..+. ++
T Consensus 103 ~~----------~~~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~---~~ 167 (295)
T 3hcw_A 103 DI----------DHQFTHIDNDNILASENLTRHVIEQ--GVDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQ---II 167 (295)
T ss_dssp SG----------GGGSCEEEECHHHHHHHHHHHHHHH--CCSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEE---EE
T ss_pred cc----------cCCceEEecCcHHHHHHHHHHHHHc--CCccEEEEcCCccchhHHHHHHHHHHHHHHcCCCee---EE
Confidence 11 0011112 11 12344455666554 3479999987654 2346678899998775 22
Q ss_pred eeecCCCCcHH----HHHHcC---CCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 211 TTEPVHHVDQT----VLKQAL---SIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 211 ~~~~~~~~~~~----~~~~~~---~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
..........+ +++... .+++|++.+-..+-..++.+.+.+. .++.++.++.
T Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D~ 229 (295)
T 3hcw_A 168 ETSNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLYELNIEIPKDVMTATFND 229 (295)
T ss_dssp EECSCHHHHHHHHHHHHHHHTCTTSCEEEEESSHHHHHHHHHHHHHTTCCTTTTEEEEEECC
T ss_pred eccCCHHHHHHHHHHHHhhcccCCCCcEEEECChHHHHHHHHHHHHcCCCCCCceEEEEeCC
Confidence 22111111111 222222 6889888887766666666655431 2345555543
No 47
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=92.50 E-value=0.51 Score=41.34 Aligned_cols=212 Identities=13% Similarity=0.064 Sum_probs=116.6
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeC----CCchHHHHHHhcCCCccEEEEe--------------
Q 023179 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQG----PDTDRLSSVLNADTIFDWIIIT-------------- 109 (286)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~----~~~~~l~~~l~~~~~~d~IvFT-------------- 109 (286)
+.|++|++.........+.+.|.+.|+++.....-..... ...+.+ .+.+.++|.|+..
T Consensus 3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~ii~~~~~~~~~~~i~~~~ 79 (293)
T 3d4o_A 3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRID---EVDWNTVDAILLPISGTNEAGKVDTIF 79 (293)
T ss_dssp CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGG---GCCGGGCSEEECCTTCCCTTCBCCBSS
T ss_pred ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccch---HHHHhcCCEEEeccccccCCceeeccc
Confidence 5689999998877778889999999999876532110000 000111 1224568888863
Q ss_pred --CHHHH-HHHHHHHHHcCCCCcEEEEEChhhH---HHHHHhhhccCCCCceeccCC-----CCCHHHHH----Hhccc-
Q 023179 110 --SPEAG-SVFLEAWKEAGTPNVRIGVVGAGTA---SIFEEVIQSSKCSLDVAFSPS-----KATGKILA----SELPK- 173 (286)
Q Consensus 110 --S~~av-~~~~~~l~~~~~~~~~i~aVG~~Ta---~~L~~~~~~~~~G~~~~~~~~-----~~~~e~L~----~~L~~- 173 (286)
++.-+ +.+++. .++.+++++|--.- +++++. |+.+...|. ..++..++ ..+..
T Consensus 80 ~~~~~~~~~~~l~~-----~~~l~~i~~G~d~id~~~~~~~~------gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~ 148 (293)
T 3d4o_A 80 SNESIVLTEEMIEK-----TPNHCVVYSGISNTYLNQCMKKT------NRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH 148 (293)
T ss_dssp CSCCCBCCHHHHHT-----SCTTCEEEESSCCHHHHHHHHHH------TCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCccchHHHHHh-----CCCCCEEEecCCCHHHHHHHHHc------CCeEEEecCCceeeeeccHhHHHHHHHHHHHh
Confidence 11111 223332 23556666776544 467777 998877663 22333222 11111
Q ss_pred --CCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCC--------C---cHHHHHHcCCCCEEEEeChHHH
Q 023179 174 --NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--------V---DQTVLKQALSIPVVAVASPSAV 240 (286)
Q Consensus 174 --~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~--------~---~~~~~~~~~~~d~IvftS~sav 240 (286)
....+++++++........+...|...|++| .+|.+.+... . .....+.+...|+|+.+.|...
T Consensus 149 ~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V---~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~~ 225 (293)
T 3d4o_A 149 TDFTIHGANVAVLGLGRVGMSVARKFAALGAKV---KVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALV 225 (293)
T ss_dssp CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEE---EEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSCC
T ss_pred cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEE---EEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChHH
Confidence 2236789999987666677888999999755 4454432110 0 0112222468999999988532
Q ss_pred --HHHHHHhccccCCCceEEEeCH----HHHHHHHHcCCCeEEeCC
Q 023179 241 --RSWVNLISDTEQWSNSVACIGE----TTASAAKRLGLKNVYYPT 280 (286)
Q Consensus 241 --~~~~~~~~~~~~~~~~iv~IG~----~Ta~~l~~~G~~~v~~~~ 280 (286)
+..++.++. +..++-++. ...+.+++.|...+.++.
T Consensus 226 i~~~~l~~mk~----~~~lin~ar~~~~~~~~~a~~~Gv~~~~~~~ 267 (293)
T 3d4o_A 226 VTANVLAEMPS----HTFVIDLASKPGGTDFRYAEKRGIKALLVPG 267 (293)
T ss_dssp BCHHHHHHSCT----TCEEEECSSTTCSBCHHHHHHHTCEEEECCC
T ss_pred hCHHHHHhcCC----CCEEEEecCCCCCCCHHHHHHCCCEEEECCC
Confidence 223344433 233333331 112566777876543443
No 48
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=92.39 E-value=1 Score=38.39 Aligned_cols=178 Identities=12% Similarity=0.092 Sum_probs=96.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEEChhh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
..+.+.++++|+++..+.. ..+.+...+.++. ...+|.||+..... ....++.+.+ .+++++++|...
T Consensus 28 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~ 99 (293)
T 3l6u_A 28 NAFKAEAKANKYEALVATS-----QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKK---AGIPVFAIDRMI 99 (293)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHH---TTCCEEEESSCC
T ss_pred HHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHH---cCCCEEEecCCC
Confidence 3455667788998875532 1222222222211 26799999976533 2244555544 377888888654
Q ss_pred HHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC--C---CCCCEEEEEcCCCC-------hhHHHHHHHhC-CCeeE
Q 023179 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--G---KKKCTVLYPASAKA-------SNEIEEGLSNR-GFEVV 205 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~--~---~~~~rvL~~~g~~~-------~~~L~~~L~~~-G~~V~ 205 (286)
... . ++..+..-....+..+++.|.+. . ...+++.++.|... ..-+.+.|++. |+++.
T Consensus 100 ~~~---~------~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~ 170 (293)
T 3l6u_A 100 RSD---A------VVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSIV 170 (293)
T ss_dssp CCT---T------CSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEE
T ss_pred CCC---c------ceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEe
Confidence 210 0 12211111112234445555542 1 11139999987654 23566788888 87764
Q ss_pred EEEeeeeecCCCCcHH---HHHH----cCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCH
Q 023179 206 RLNTYTTEPVHHVDQT---VLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE 262 (286)
Q Consensus 206 ~~~vY~~~~~~~~~~~---~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~ 262 (286)
.. +.. ....+. ..+. -..+++|++++-..+-..+..+.+.+..++.++.++.
T Consensus 171 ~~--~~~---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~di~vig~d~ 229 (293)
T 3l6u_A 171 DS--VSG---NYDPVTSERVMRQVIDSGIPFDAVYCHNDDIAMGVLEALKKAKISGKIVVGIDG 229 (293)
T ss_dssp EE--EEC---TTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred ee--ccC---CCCHHHHHHHHHHHHHhCCCCCEEEECCchHHHHHHHHHHhCCCCCeEEEEecC
Confidence 43 211 222221 1221 2578999999998887777777765433566776643
No 49
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=92.38 E-value=0.2 Score=44.16 Aligned_cols=167 Identities=10% Similarity=0.054 Sum_probs=87.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++..+. . ..+.+...+.++. ...+|.||+.+...-...++.+. ..++++++++.....
T Consensus 81 gi~~~a~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~---~~~iPvV~~~~~~~~- 151 (332)
T 2hsg_A 81 GIEDIATMYKYNIILSN---S--DQNQDKELHLLNNMLGKQVDGIIFMSGNVTEEHVEELK---KSPVPVVLAASIEST- 151 (332)
T ss_dssp HHHHHHHHHTCEEEEEE---C--CSHHHHHHHHHHHTSCCSSCCEEECCSSCCHHHHHHHT---TSSSCEEEESCCCSC-
T ss_pred HHHHHHHHcCCEEEEEe---C--CCChHHHHHHHHHHHhCCCcEEEEecCCCCHHHHHHHH---hCCCCEEEEccccCC-
Confidence 34455667898876542 1 1122222223332 35799999976532222333332 247889999864311
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCC-C-------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~-~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
. ++..+..-....+..+++.|.+. ..+++.++.|.. . ..-+.+.|+++|..+....++...
T Consensus 152 ---~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 220 (332)
T 2hsg_A 152 ---N------QIPSVTIDYEQAAFDAVQSLIDS--GHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGD 220 (332)
T ss_dssp ---T------TSCEEEECHHHHHHHHHHHHHTT--TCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECC
T ss_pred ---C------CCCEEEEChHHHHHHHHHHHHHC--CCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCC
Confidence 1 22221111112244455666654 347899998875 3 234678899999876432233221
Q ss_pred cCCCCcHHHHHH----cCCCCEEEEeChHHHHHHHHHhccc
Q 023179 214 PVHHVDQTVLKQ----ALSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 214 ~~~~~~~~~~~~----~~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
.......+..+. -..+++|++.+-..+-..+..+.+.
T Consensus 221 ~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~ 261 (332)
T 2hsg_A 221 YTYDSGIEAVEKLLEEDEKPTAIFVGTDEMALGVIHGAQDR 261 (332)
T ss_dssp SSHHHHHHHHHHHHHSSSCCSEEEESSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHcCCCCCeEEEECChHHHHHHHHHHHHc
Confidence 111111112222 1368999999887766666665543
No 50
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=92.06 E-value=0.3 Score=43.21 Aligned_cols=183 Identities=11% Similarity=-0.016 Sum_probs=94.7
Q ss_pred CeEEEeCCCCch-------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH
Q 023179 51 PKVVVTRERGKN-------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (286)
Q Consensus 51 ~~VLitR~~~~~-------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~ 123 (286)
++|.+.-+...+ ..+.+.++++|+++..+..-. . .....+.+.+ ....+|.||+.+. +..
T Consensus 65 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~-~~~~~~~~~l-~~~~vdGiIi~~~---------~~~ 131 (333)
T 3jvd_A 65 ALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS--V-QAQDVVMESL-ISIQAAGIIHVPV---------VGS 131 (333)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS--H-HHHHHHHHHH-HHHTCSEEEECCC---------TTC
T ss_pred CEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC--h-HHHHHHHHHH-HhCCCCEEEEcch---------HHH
Confidence 455555444333 334456667898887654322 1 0011122222 1257899999887 222
Q ss_pred cCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHH
Q 023179 124 AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEG 196 (286)
Q Consensus 124 ~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~ 196 (286)
....+++++.+|..... . ++..+..-....+..+++.|.+. ..+++.++.|.... .-+.+.
T Consensus 132 ~~~~~iPvV~~~~~~~~----~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~a 199 (333)
T 3jvd_A 132 IAPEGIPMVQLTRGELG----P------GFPRVLCDDEAGFFQLTESVLGG--SGMNIAALVGEESLSTTQERMRGISHA 199 (333)
T ss_dssp CC-CCSCEEEECC--------C------CSCEEEECHHHHHHHHHHHHCCS--SSCEEEEEESCTTSHHHHHHHHHHHHH
T ss_pred HhhCCCCEEEECccCCC----C------CCCEEEEChHHHHHHHHHHHHHC--CCCeEEEEeCCCCCccHHHHHHHHHHH
Confidence 22358899999976422 2 33332221122345556666654 34799999887542 346678
Q ss_pred HHhCCCeeEEEEeeeeecCCCCcHHHHHH-c--CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeC
Q 023179 197 LSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-A--LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIG 261 (286)
Q Consensus 197 L~~~G~~V~~~~vY~~~~~~~~~~~~~~~-~--~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG 261 (286)
|++.|.. +.++..........+..++ + ..+++|++.+-..+-..+..+.+.+. .++.++.++
T Consensus 200 l~~~g~~---~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~disvig~D 267 (333)
T 3jvd_A 200 ASIYGAE---VTFHFGHYSVESGEEMAQVVFNNGLPDALIVASPRLMAGVMRAFTRLNVRVPHDVVIGGYD 267 (333)
T ss_dssp HHHTTCE---EEEEECCSSHHHHHHHHHHHHHTCCCSEEEECCHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHCCCC---EEEecCCCCHHHHHHHHHHHhcCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 8899876 2111011111111111221 1 22899999998777766666665432 234455544
No 51
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=92.04 E-value=1.4 Score=34.06 Aligned_cols=111 Identities=16% Similarity=0.217 Sum_probs=71.1
Q ss_pred CCeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH-----HHHHHH
Q 023179 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFLE 119 (286)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a-----v~~~~~ 119 (286)
..+|++....++ ..-+...|+..|++|+++-.. .+ .+++.+... ..+.|.|.+.+..+ +..+.+
T Consensus 3 ~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~--~p---~e~~v~~a~-~~~~d~v~lS~~~~~~~~~~~~~i~ 76 (137)
T 1ccw_A 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL--SP---QELFIKAAI-ETKADAILVSSLYGQGEIDCKGLRQ 76 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE--EC---HHHHHHHHH-HHTCSEEEEEECSSTHHHHHTTHHH
T ss_pred CCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC--CC---HHHHHHHHH-hcCCCEEEEEecCcCcHHHHHHHHH
Confidence 356777755442 346667899999999988662 22 134444442 24678888876433 444567
Q ss_pred HHHHcCCCCcEEEEEChhh---------HHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 120 AWKEAGTPNVRIGVVGAGT---------ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~T---------a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
.+++.+..++++++=|... .+.+++. |+...+.+ ..+...+++.|.+
T Consensus 77 ~l~~~g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~------G~d~~~~~-g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 77 KCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDM------GYDRVYAP-GTPPEVGIADLKK 132 (137)
T ss_dssp HHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHT------TCSEECCT-TCCHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEECCCcCchHhhhhhHHHHHHC------CCCEEECC-CCCHHHHHHHHHH
Confidence 7777776678888777541 4568888 99865544 4466666666643
No 52
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=91.95 E-value=0.82 Score=39.63 Aligned_cols=162 Identities=8% Similarity=-0.012 Sum_probs=82.5
Q ss_pred HHHHHHHhCCC----cEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 64 KLIKALAKHRI----DCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 64 ~l~~~L~~~G~----~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
-+.+.|+++|+ ++..+ +... ..+.+...+.++. ...+|.||+++..+...+.. . ..+++++.+|..
T Consensus 28 gi~~~l~~~Gy~~g~~v~l~-~~~~--~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~~----~-~~~iPvV~~~~~ 99 (302)
T 2qh8_A 28 GLLDGLKAKGYEEGKNLEFD-YKTA--QGNPAIAVQIARQFVGENPDVLVGIATPTAQALVS----A-TKTIPIVFTAVT 99 (302)
T ss_dssp HHHHHHHHTTCCBTTTEEEE-EEEC--TTCHHHHHHHHHHHHHTCCSEEEEESHHHHHHHHH----H-CSSSCEEEEEES
T ss_pred HHHHHHHHcCCCCCCceEEE-EecC--CCCHHHHHHHHHHHHhCCCCEEEECChHHHHHHHh----c-CCCcCEEEEecC
Confidence 45566778898 54321 1111 2232322222222 36799999998766554332 1 357788877742
Q ss_pred hHHH---HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEE
Q 023179 138 TASI---FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLN 208 (286)
Q Consensus 138 Ta~~---L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~ 208 (286)
-... .... ...+-...-+.........++.|.+.....+|+.++.+... .+.+.+.|++.|+++....
T Consensus 100 ~~~~~~~v~~~---~~~~~~~~gv~~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~ 176 (302)
T 2qh8_A 100 DPVGAKLVKQL---EQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEAT 176 (302)
T ss_dssp CTTTTTSCSCS---SSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHhhcCccccc---cCCCCCEEEEECCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHHHHcCCEEEEEe
Confidence 1110 0000 00011111111122234444555554324479999987643 2456788899999887665
Q ss_pred eeeeecCCCCcHHHHHH-cCCCCEEEEeChHHH
Q 023179 209 TYTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAV 240 (286)
Q Consensus 209 vY~~~~~~~~~~~~~~~-~~~~d~IvftS~sav 240 (286)
++.. ....+..+. +..+|+|++.+-..+
T Consensus 177 ~~~~----~~~~~~~~~l~~~~dai~~~~D~~a 205 (302)
T 2qh8_A 177 ALKS----ADVQSATQAIAEKSDVIYALIDNTV 205 (302)
T ss_dssp CSSG----GGHHHHHHHHGGGCSEEEECSCHHH
T ss_pred cCCh----HHHHHHHHHHhccCCEEEECCcHhH
Confidence 5431 112223333 357899988876544
No 53
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=91.86 E-value=0.65 Score=39.37 Aligned_cols=175 Identities=9% Similarity=0.062 Sum_probs=93.0
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
.+.+.++++|+++.... . ..+.+...+.++. ....|.||+.+... ....++.+.+ .++++++++....
T Consensus 22 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~i~~~~~ 93 (271)
T 2dri_A 22 GAQKEADKLGYNLVVLD---S--QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQ---ANIPVITLDRQAT 93 (271)
T ss_dssp HHHHHHHHHTCEEEEEE---C--TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHH---TTCCEEEESSCCS
T ss_pred HHHHHHHHcCcEEEEeC---C--CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH---CCCcEEEecCCCC
Confidence 34556677898776432 1 1222221222222 35799999976432 2223444444 3678888886421
Q ss_pred HHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeee
Q 023179 140 SIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~ 211 (286)
.. +....+... ...+...++.|.+.....+++.++.|... ..-+.+.|++.|+++... +.
T Consensus 94 ----~~------~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~--~~ 161 (271)
T 2dri_A 94 ----KG------EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLAS--QP 161 (271)
T ss_dssp ----SS------CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEE--EE
T ss_pred ----CC------ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEe--cC
Confidence 11 111111111 12234455666554322369999988653 234668888888876432 11
Q ss_pred eecCCCCcH---H----HHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeC
Q 023179 212 TEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIG 261 (286)
Q Consensus 212 ~~~~~~~~~---~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG 261 (286)
.....+ + +++.-..+++|++++-..+-..++.+.+.+..++.++.++
T Consensus 162 ---~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~g~~dv~vvGfD 215 (271)
T 2dri_A 162 ---ADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFD 215 (271)
T ss_dssp ---CTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEEEE
T ss_pred ---CCCCHHHHHHHHHHHHHhCCCccEEEECCCcHHHHHHHHHHHcCCCCcEEEEec
Confidence 122221 1 2222246899999998887777777766543356666664
No 54
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=91.78 E-value=0.2 Score=44.43 Aligned_cols=166 Identities=10% Similarity=0.058 Sum_probs=88.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++.... . ..+.+...+.++. ...+|.||+.....-...++.+.+ .+++++++|...
T Consensus 89 gi~~~a~~~g~~~~~~~---~--~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~i~~~~--- 157 (344)
T 3kjx_A 89 GINQVLEDTELQPVVGV---T--DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDA---AGIPVVEIMDSD--- 157 (344)
T ss_dssp HHHHHHTSSSSEEEEEE---C--TTCHHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHH---CSSCEEEEEECS---
T ss_pred HHHHHHHHCCCEEEEEe---C--CCCHHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHh---CCCCEEEEeCCC---
Confidence 44556667888875332 1 1122222222221 367999999865433344454544 367888886421
Q ss_pred HHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCC--C------hhHHHHHHHhCCCeeEEEEeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAK--A------SNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~--~------~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
... .... +... ...+..+++.|.+. ..+++.|+.+.. . ..-+.+.|+++|..+....+|..
T Consensus 158 -~~~------~~~~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~ 227 (344)
T 3kjx_A 158 -GKP------VDAM-VGISHRRAGREMAQAILKA--GYRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSG 227 (344)
T ss_dssp -SCC------SSEE-EEECHHHHHHHHHHHHHHH--TCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSS
T ss_pred -CCC------CCCE-EEECcHHHHHHHHHHHHHC--CCCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeC
Confidence 011 2211 1111 12244455666554 336888888764 1 23466889999988766555432
Q ss_pred ecCCCCcHH----HHHHcCCCCEEEEeChHHHHHHHHHhccc
Q 023179 213 EPVHHVDQT----VLKQALSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 213 ~~~~~~~~~----~~~~~~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
........+ +++....+++|++.+-..+-..+..+.+.
T Consensus 228 ~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~ 269 (344)
T 3kjx_A 228 GSALAKGREMTQAMLERSPDLDFLYYSNDMIAAGGLLYLLEQ 269 (344)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCCEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHHHHc
Confidence 211111111 22222478999999987776666666544
No 55
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=91.74 E-value=0.52 Score=39.89 Aligned_cols=179 Identities=13% Similarity=0.083 Sum_probs=90.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (286)
.+.+.++++|+++.....-. .+ .......+.+ ....+|.||+.+...-...++ .....++++++++.....
T Consensus 20 gi~~~~~~~g~~~~~~~~~~-~~-~~~~~~~~~l-~~~~vdgiI~~~~~~~~~~~~---~~~~~~iPvV~~~~~~~~--- 90 (276)
T 2h0a_A 20 GIEGVLLEQRYDLALFPILS-LA-RLKRYLENTT-LAYLTDGLILASYDLTERFEE---GRLPTERPVVLVDAQNPR--- 90 (276)
T ss_dssp HHHHHHGGGTCEEEECCCCS-CC-CCC----------CCCSEEEEESCCCC---------CCSCSSCEEEESSCCTT---
T ss_pred HHHHHHHHCCCEEEEEeCCC-ch-hhHHHHHHHH-HhCCCCEEEEecCCCCHHHHH---HHhhcCCCEEEEeccCCC---
Confidence 44556677898877543211 11 1111122222 135799999987543222222 222347889999865421
Q ss_pred HhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCC-C-----------hhHHHHHHHhCCCeeEEEEeee
Q 023179 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK-A-----------SNEIEEGLSNRGFEVVRLNTYT 211 (286)
Q Consensus 144 ~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~-~-----------~~~L~~~L~~~G~~V~~~~vY~ 211 (286)
. ..+..-....+..+++.|.+. ..+|+.++.+.. . ..-+.+.|++.|.++....++.
T Consensus 91 -~--------~~V~~d~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~ 159 (276)
T 2h0a_A 91 -Y--------DSVYLDNRLGGRLAGAYLARF--PGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYI 159 (276)
T ss_dssp -S--------EEEEECSHHHHHHHHHHHTTS--SSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEE
T ss_pred -C--------CEEEEccHHHHHHHHHHHHHc--CCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeee
Confidence 1 111111122345566777664 347999998765 3 1235578888997764322332
Q ss_pred eecCCCCcHHHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 212 TEPVHHVDQTVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 212 ~~~~~~~~~~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
.........+..+. + ..+++|++.+-..+...+..+.+.+. .++.++.++.
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 217 (276)
T 2h0a_A 160 TRHSQEGGRLALRHFLEKASPPLNVFAGADQVALGVLEEAVRLGLTPGRDVRVLGFDG 217 (276)
T ss_dssp ECSSHHHHHHHHHHHHTTCCSSEEEECSSHHHHHHHHHHHHTTSCTTTTSEEEEEESC
T ss_pred cCCChHHHHHHHHHHHhCCCCCCEEEECCcHHHHHHHHHHHHcCCCCCCCeEEEEeCC
Confidence 21111111112222 2 35899998888877777777766532 2455666654
No 56
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=91.68 E-value=2.1 Score=35.27 Aligned_cols=117 Identities=11% Similarity=0.074 Sum_probs=76.6
Q ss_pred CCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEE
Q 023179 127 PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (286)
Q Consensus 127 ~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~ 206 (286)
.+..++.-.-+|++.|++++ ++.++.+ +.+.-++++.|......+.|+-++.....-..
T Consensus 50 ~~~dVIISRGgta~~lr~~~-----~iPVV~I--~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~-------------- 108 (196)
T 2q5c_A 50 DEVDAIISRGATSDYIKKSV-----SIPSISI--KVTRFDTMRAVYNAKRFGNELALIAYKHSIVD-------------- 108 (196)
T ss_dssp TTCSEEEEEHHHHHHHHTTC-----SSCEEEE--CCCHHHHHHHHHHHGGGCSEEEEEEESSCSSC--------------
T ss_pred CCCeEEEECChHHHHHHHhC-----CCCEEEE--cCCHhHHHHHHHHHHhhCCcEEEEeCcchhhH--------------
Confidence 35567777778999999985 7776555 46788888888765444457766644332111
Q ss_pred EEeeeeecCCCCcHHHHHHc-CCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeEEeC
Q 023179 207 LNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYP 279 (286)
Q Consensus 207 ~~vY~~~~~~~~~~~~~~~~-~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v~~~ 279 (286)
...+.+.+ -++....+.|+..++..++.+.+. +..+++=|..+.+.++++|++.+.+-
T Consensus 109 ------------~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~---G~~vvVG~~~~~~~A~~~Gl~~vli~ 167 (196)
T 2q5c_A 109 ------------KHEIEAMLGVKIKEFLFSSEDEITTLISKVKTE---NIKIVVSGKTVTDEAIKQGLYGETIN 167 (196)
T ss_dssp ------------HHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHT---TCCEEEECHHHHHHHHHTTCEEEECC
T ss_pred ------------HHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHC---CCeEEECCHHHHHHHHHcCCcEEEEe
Confidence 11111112 245566667777777777666653 57788889999999999999876543
No 57
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=91.55 E-value=0.12 Score=44.23 Aligned_cols=160 Identities=10% Similarity=0.031 Sum_probs=87.7
Q ss_pred HHHHHHHHhCCCc-EEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChh-h
Q 023179 63 GKLIKALAKHRID-CLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG-T 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~-v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~-T 138 (286)
..+.+.++++|++ +..++.- .+.+...+.++. ...+|.||+.+ ..+......+++++.++.. .
T Consensus 30 ~gi~~~a~~~g~~~~~~~~~~-----~~~~~~~~~~~~l~~~~vdgiIi~~--------~~~~~~~~~~iPvV~~~~~~~ 96 (277)
T 3hs3_A 30 DGIQEVIQKEGYTALISFSTN-----SDVKKYQNAIINFENNNVDGIITSA--------FTIPPNFHLNTPLVMYDSANI 96 (277)
T ss_dssp HHHHHHHHHTTCEEEEEECSS-----CCHHHHHHHHHHHHHTTCSEEEEEC--------CCCCTTCCCSSCEEEESCCCC
T ss_pred HHHHHHHHHCCCCEEEEEeCC-----CChHHHHHHHHHHHhCCCCEEEEcc--------hHHHHHHhCCCCEEEEccccc
Confidence 3455667788998 5543221 122211122211 36799999998 1111222347899999865 3
Q ss_pred HHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeee
Q 023179 139 ASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~ 211 (286)
. .. ++ .+..-....+...++.|. . ..+++.++.|... ..-+.+.|+++|..+... ++.
T Consensus 97 ~----~~------~~-~V~~D~~~~g~~a~~~L~-~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~ 161 (277)
T 3hs3_A 97 N----DD------IV-RIVSNNTKGGKESIKLLS-K--KIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ETP 161 (277)
T ss_dssp C----SS------SE-EEEECHHHHHHHHHHTSC-T--TCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECC
T ss_pred C----CC------CE-EEEEChHHHHHHHHHHHH-h--CCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-Ccc
Confidence 1 11 33 211111223455666666 3 4579999988753 334667899999888665 433
Q ss_pred eecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccc
Q 023179 212 TEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
.........++++.-..+++|++.+-..+-..++.+.+.
T Consensus 162 ~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~ 200 (277)
T 3hs3_A 162 ENNPYISAQSALNKSNQFDAIITVNDLYAAEIIKEAKRR 200 (277)
T ss_dssp SSCHHHHHHHHHHTGGGCSEEECSSHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHcCCCCCCEEEECCHHHHHHHHHHHHHc
Confidence 221100001122222478999998888777666666554
No 58
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=91.47 E-value=1.2 Score=35.46 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=71.4
Q ss_pred CCCeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHH
Q 023179 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFL 118 (286)
Q Consensus 49 ~g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~-----~av~~~~ 118 (286)
...+|++..+.++ ..-+...|+..|++|+++..... .+.+.+... ..+.|.|.+++. ..+..++
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p-----~e~lv~aa~-~~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQT-----PEQVAMAAV-QEDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCC-----HHHHHHHHH-HTTCSEEEEEESSSCHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC-----HHHHHHHHH-hcCCCEEEEEeechhhHHHHHHHH
Confidence 3567887755442 35777888999999999876521 244555552 357898888875 3456677
Q ss_pred HHHHHcCCCCcEEEEEChhhHH---HHHHhhhccCCCCceeccCCCCCHHHHHHhc
Q 023179 119 EAWKEAGTPNVRIGVVGAGTAS---IFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (286)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~---~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L 171 (286)
+.+++.+.+++++++=|....+ .+++. |+...+.+. .+.+..++.+
T Consensus 91 ~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~------G~d~v~~~~-~~~~~~~~~~ 139 (161)
T 2yxb_A 91 AKLRELGADDIPVVLGGTIPIPDLEPLRSL------GIREIFLPG-TSLGEIIEKV 139 (161)
T ss_dssp HHHHHTTCTTSCEEEEECCCHHHHHHHHHT------TCCEEECTT-CCHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEeCCCchhcHHHHHHC------CCcEEECCC-CCHHHHHHHH
Confidence 7787777667889888876543 26677 987545543 3433333444
No 59
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=91.23 E-value=2.9 Score=35.26 Aligned_cols=173 Identities=9% Similarity=0.026 Sum_probs=89.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchH---HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDR---LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~---l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
.+.+.++++|+++..+.. ..+.+. +.+.+ ....+|.||+..... ...++.+.+ .+++++++|....
T Consensus 28 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l-~~~~vdgiIi~~~~~-~~~~~~l~~---~~iPvV~i~~~~~- 96 (276)
T 3jy6_A 28 GISSILESRGYIGVLFDA-----NADIEREKTLLRAI-GSRGFDGLILQSFSN-PQTVQEILH---QQMPVVSVDREMD- 96 (276)
T ss_dssp HHHHHHHTTTCEEEEEEC-----TTCHHHHHHHHHHH-HTTTCSEEEEESSCC-HHHHHHHHT---TSSCEEEESCCCT-
T ss_pred HHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHH-HhCCCCEEEEecCCc-HHHHHHHHH---CCCCEEEEecccC-
Confidence 455666788988875432 122222 22223 236899999998877 555555544 4788999986542
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-hhHHH---HHHHhCCCeeEEEEeeeeecCC
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-SNEIE---EGLSNRGFEVVRLNTYTTEPVH 216 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-~~~L~---~~L~~~G~~V~~~~vY~~~~~~ 216 (286)
.. ++..+..-....+..+++.|.+. ..+++.++.+... ..... +++.+. + .+...+......
T Consensus 97 ---~~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~gf~~~-l--~~~~~~~~~~~~ 162 (276)
T 3jy6_A 97 ---AC------PWPQVVTDNFEAAKAATTAFRQQ--GYQHVVVLTSELELSRTRQERYRGILAA-A--QDVDVLEVSESS 162 (276)
T ss_dssp ---TC------SSCEEECCHHHHHHHHHHHHHTT--TCCEEEEEEECSTTCHHHHHHHHHHHTT-C--SEEEEEEECSSS
T ss_pred ---CC------CCCEEEEChHHHHHHHHHHHHHc--CCCeEEEEecCCCCCchHHHHHHHHHHH-H--HhCCcEEEeccc
Confidence 12 33222221122345556666654 3479999988765 32222 222221 1 111111111111
Q ss_pred CCc----HHHHHH---cCCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeC
Q 023179 217 HVD----QTVLKQ---ALSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIG 261 (286)
Q Consensus 217 ~~~----~~~~~~---~~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG 261 (286)
... ..+.+. -..+++|++++-..+...++.+.+.+. .++.++.++
T Consensus 163 ~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d 217 (276)
T 3jy6_A 163 YNHSEVHQRLTQLITQNDQKTVAFALKERWLLEFFPNLIISGLIDNQTVTATGFA 217 (276)
T ss_dssp CCHHHHHHHHHHHHHSSSSCEEEEESSHHHHHHHSHHHHHSSSCCSSSEEEEEBC
T ss_pred cCCcHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHcCCCCCCcEEEEEEC
Confidence 111 111211 257899999888877777777665432 234455544
No 60
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=91.12 E-value=5.4 Score=37.99 Aligned_cols=197 Identities=17% Similarity=0.171 Sum_probs=112.7
Q ss_pred chHHHHHHHHhCCCcEEEe-ceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cCCCCcEEEEEC-hh
Q 023179 61 KNGKLIKALAKHRIDCLEL-PLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AGTPNVRIGVVG-AG 137 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~-P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~-~~~~~~~i~aVG-~~ 137 (286)
+..++.+.|++.|+++..+ | .....++ +.++.+.+.-+..++.......+.+++ .+.+-....-+| ..
T Consensus 171 D~~eikrlL~~~Gi~v~~~~p-----gg~t~~e----i~~~~~A~~niv~~~~~g~~~A~~Le~r~GiP~i~~~PiG~~~ 241 (525)
T 3aek_B 171 DVAEVTKLLATMGIKVNVCAP-----LGASPDD----LRKLGQAHFNVLMYPETGESAARHLERACKQPFTKIVPIGVGA 241 (525)
T ss_dssp HHHHHHHHHHTTTCEEEEEEE-----TTCCHHH----HHTGGGSSEEEECCHHHHHHHHHHHHHHSCCCBCCCCCCSHHH
T ss_pred hHHHHHHHHHHCCCeEEEEeC-----CCCCHHH----HHhhccCCEEEEEChhhHHHHHHHHHHHcCCCceecCCcCHHH
Confidence 4578999999999999874 3 1122233 335666778888888876667777755 355544446788 78
Q ss_pred hHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHH-HhCCCeeEEEEeeeeecC
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKASNEIEEGL-SNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L-~~~G~~V~~~~vY~~~~~ 215 (286)
|.+.|++..+.- |... .... ..-..-+...+......|+|+++..+..-.-.|...| .+.|++|..+-+|.....
T Consensus 242 T~~~Lr~ia~~~--g~~~-~i~~~r~~~~~~~~~~d~~~l~GKrv~i~gd~~~~~~la~~L~~ElGm~vv~~gt~~~~~~ 318 (525)
T 3aek_B 242 TRDFLAEVSKIT--GLPV-VTDESTLRQPWWSASVDSTYLTGKRVFIFGDGTHVIAAARIAAKEVGFEVVGMGCYNREMA 318 (525)
T ss_dssp HHHHHHHHHHHH--CCCC-CCCCTTCCHHHHHHSGGGGGGTTCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEESCGGGH
T ss_pred HHHHHHHHHHHH--CCCH-HHHHHHHHHHHHHHhhhhhhcCCCEEEEEcCchHHHHHHHHHHHHcCCeeEEEecCchhHH
Confidence 888888864322 4443 2211 1111111111111223778999886665566788889 799999876655532110
Q ss_pred CCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeEE
Q 023179 216 HHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVY 277 (286)
Q Consensus 216 ~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v~ 277 (286)
+ ..+..++.. ..++++......++.++...+ ..++.-|..-...+++.|...+.
T Consensus 319 ~-~~~~~~~~~-~~~v~i~~D~~el~~~i~~~~------pDL~ig~~~~~~~a~~~giP~~~ 372 (525)
T 3aek_B 319 R-PLRTAAAEY-GLEALITDDYLEVEKAIEAAA------PELILGTQMERNIAKKLGLPCAV 372 (525)
T ss_dssp H-HHHHHHHHT-TCCCEECSCHHHHHHHHHHHC------CSEEEECHHHHHHHHHHTCCEEE
T ss_pred H-HHHHHHHhc-CCcEEEeCCHHHHHHHHhhcC------CCEEEecchhHHHHHHcCCCEEE
Confidence 0 001122222 224555445554444444332 34566666667777888876543
No 61
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=91.06 E-value=1.3 Score=37.47 Aligned_cols=163 Identities=13% Similarity=0.035 Sum_probs=86.6
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHH-HHHHcCCCCcEEEEEChhhH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLE-AWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~-~l~~~~~~~~~i~aVG~~Ta 139 (286)
..+.+.++++|+++..+.. ..+.+...+.++. ...+|.||+.+.. ...++ .+.+ .+++++++|....
T Consensus 28 ~gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dgiIi~~~~--~~~~~~~l~~---~~iPvV~~~~~~~ 97 (277)
T 3e61_A 28 RGVEDVALAHGYQVLIGNS-----DNDIKKAQGYLATFVSHNCTGMISTAFN--ENIIENTLTD---HHIPFVFIDRINN 97 (277)
T ss_dssp HHHHHHHHHTTCCEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEECGGG--HHHHHHHHHH---C-CCEEEGGGCC-
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEecCC--hHHHHHHHHc---CCCCEEEEeccCC
Confidence 4555667788998875322 1122222222221 2679999998733 22344 4544 3778888887653
Q ss_pred HHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 023179 140 SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
..- .. +. +. ...+..+++.|.+. ..++++++.+... ..-+.+.|++.|..+.. ++..
T Consensus 98 ~~~--~V-----~~--D~---~~~g~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~--~~~~ 161 (277)
T 3e61_A 98 EHN--GI-----ST--NH---FKGGQLQAEVVRKG--KGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKM--LEAT 161 (277)
T ss_dssp -----------------H---HHHHHHHHHHHHHT--TCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEE--EEGG
T ss_pred CCC--eE-----Ee--ch---HHHHHHHHHHHHHC--CCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc--eecC
Confidence 221 10 11 11 12345556666664 3468999987754 23466888888887766 2222
Q ss_pred ecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhcccc
Q 023179 213 EPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTE 251 (286)
Q Consensus 213 ~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~ 251 (286)
........+.+..-..+++|++.+-..+...+..+.+.+
T Consensus 162 ~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g 200 (277)
T 3e61_A 162 LLDNDKKFIDLIKELSIDSIICSNDLLAINVLGIVQRYH 200 (277)
T ss_dssp GGGSHHHHHHHHHHHTCCEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHhhcCCCCCEEEECCcHHHHHHHHHHHHcC
Confidence 211111111222235799999999888777777666543
No 62
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=90.94 E-value=2.3 Score=35.95 Aligned_cols=116 Identities=12% Similarity=0.141 Sum_probs=79.4
Q ss_pred CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEE
Q 023179 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRL 207 (286)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~ 207 (286)
+..++.-.-+|++.|++.+ ++.++.+ +.+.-+++..|......++++-++.....-..+.
T Consensus 63 ~~dVIISRGgta~~Lr~~~-----~iPVV~I--~vs~~Dil~aL~~a~~~~~kIavVg~~~~~~~~~------------- 122 (225)
T 2pju_A 63 RCDAIIAAGSNGAYLKSRL-----SVPVILI--KPSGYDVLQFLAKAGKLTSSIGVVTYQETIPALV------------- 122 (225)
T ss_dssp CCSEEEEEHHHHHHHHTTC-----SSCEEEE--CCCHHHHHHHHHHTTCTTSCEEEEEESSCCHHHH-------------
T ss_pred CCeEEEeCChHHHHHHhhC-----CCCEEEe--cCCHHHHHHHHHHHHhhCCcEEEEeCchhhhHHH-------------
Confidence 4667777788999999985 7776555 4678888888877655556777765443222111
Q ss_pred EeeeeecCCCCcHHHHHHc-CCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeEEeC
Q 023179 208 NTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYP 279 (286)
Q Consensus 208 ~vY~~~~~~~~~~~~~~~~-~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v~~~ 279 (286)
.+.+.+ -+++...+.|+..++..+..+.+. +..+++=|..+.+.++++|++.+.+-
T Consensus 123 -------------~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~---G~~vVVG~~~~~~~A~~~Gl~~vlI~ 179 (225)
T 2pju_A 123 -------------AFQKTFNLRLDQRSYITEEDARGQINELKAN---GTEAVVGAGLITDLAEEAGMTGIFIY 179 (225)
T ss_dssp -------------HHHHHHTCCEEEEEESSHHHHHHHHHHHHHT---TCCEEEESHHHHHHHHHTTSEEEESS
T ss_pred -------------HHHHHhCCceEEEEeCCHHHHHHHHHHHHHC---CCCEEECCHHHHHHHHHcCCcEEEEC
Confidence 111112 256677788888888877777653 57788888999999999999876543
No 63
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=90.92 E-value=0.48 Score=41.17 Aligned_cols=177 Identities=10% Similarity=0.045 Sum_probs=93.3
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
+.+.++++|+++..+.. ...+.+...+.++. ...+|.||+.... .+...++.+.+ .++++++++.....
T Consensus 22 i~~~~~~~g~~~~~~~~----~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~~ 94 (313)
T 2h3h_A 22 VKAAGKALGVDTKFFVP----QKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE---MGIPVVTLDTDSPD 94 (313)
T ss_dssp HHHHHHHHTCEEEEECC----SSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH---TTCCEEEESSCCTT
T ss_pred HHHHHHHcCCEEEEECC----CCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH---CCCeEEEeCCCCCC
Confidence 34556678987654321 11122221122211 2579999986543 22234444444 36788888865311
Q ss_pred HHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
.. .+.. +... ...+..+++.|.+.....+++.++.+... ..-+.+.|++.|+++.. ++..
T Consensus 95 ---~~------~~~~-V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--~~~~ 162 (313)
T 2h3h_A 95 ---SG------RYVY-IGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVD--ILND 162 (313)
T ss_dssp ---SC------CSCE-EECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEE--EEEC
T ss_pred ---cc------eeEE-ECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEE--eecC
Confidence 01 1221 1122 12234455555554223479999988743 23466788888887754 2221
Q ss_pred ecCCCCcH---H----HHHHcCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCHH
Q 023179 213 EPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 263 (286)
Q Consensus 213 ~~~~~~~~---~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~~ 263 (286)
....+ + +++.-..+++|++.+-..+-..++.+.+.+. .++.++.++..
T Consensus 163 ---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~G~p~dv~vvg~d~~ 218 (313)
T 2h3h_A 163 ---EEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPAQALVVKNAGKVGKVKIVCFDTT 218 (313)
T ss_dssp ---SSCHHHHHHHHHHHHHHCTTCCEEEECSTTHHHHHHHHHHHTTCTTTSEEEEECCC
T ss_pred ---CCCHHHHHHHHHHHHHHCcCceEEEEcCCCccHHHHHHHHHcCCCCCeEEEEeCCC
Confidence 22211 1 2222246899999987777667776665432 25778888654
No 64
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=90.76 E-value=1.2 Score=38.46 Aligned_cols=180 Identities=10% Similarity=0.063 Sum_probs=97.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHH--HHHHHHHHHcCCCCcEEEEEChhh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAGT 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av--~~~~~~l~~~~~~~~~i~aVG~~T 138 (286)
..+.+.++++|+++..+.. ..+.+...+.++. ...+|.||+.....- ...++.+.+ .++++++++...
T Consensus 22 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~ 93 (313)
T 3m9w_A 22 DIFVKKAESLGAKVFVQSA-----NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQ---EGIKVLAYDRMI 93 (313)
T ss_dssp HHHHHHHHHTSCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHHT---TTCEEEEESSCC
T ss_pred HHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHH---CCCeEEEECCcC
Confidence 4566777789988875432 2222221222221 257999999875432 344555543 478999998754
Q ss_pred HHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhC----CCeeEE
Q 023179 139 ASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR----GFEVVR 206 (286)
Q Consensus 139 a~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~----G~~V~~ 206 (286)
.. . ++...+... ...+..+++.|.+.. ..++++++.|.... .-+.+.|++. ++.+..
T Consensus 94 ~~----~------~~~~~V~~D~~~~g~~a~~~L~~~~-G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~ 162 (313)
T 3m9w_A 94 ND----A------DIDFYISFDNEKVGELQAKALVDIV-PQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVG 162 (313)
T ss_dssp TT----S------CCSEEEEECHHHHHHHHHHHHHHHC-SSEEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CC----C------CceEEEecCHHHHHHHHHHHHHHhC-CCCcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEe
Confidence 22 2 331112222 123455666666222 33599999876542 3455667665 444432
Q ss_pred EEeeeeecCCCCc----HHHHHHc-CCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCH
Q 023179 207 LNTYTTEPVHHVD----QTVLKQA-LSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 262 (286)
Q Consensus 207 ~~vY~~~~~~~~~----~~~~~~~-~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~ 262 (286)
.. |......... .++++.. ..+++|++++-..+...++.+.+.+. .++.++.++.
T Consensus 163 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~~di~vig~d~ 223 (313)
T 3m9w_A 163 DQ-WVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGKVAISGQDA 223 (313)
T ss_dssp EE-ECGGGCHHHHHHHHHHHHHHTTTCCCEEEESSHHHHHHHHHHHHTTTCTTTSEECCCSC
T ss_pred ec-cCCCcCHHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHHHcCCCCCcEEEecCC
Confidence 22 1111111111 1123223 47999999998888888887776543 2466666653
No 65
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=90.74 E-value=0.71 Score=40.71 Aligned_cols=165 Identities=9% Similarity=0.020 Sum_probs=85.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++.... ...+.+...+.++. ...+|.||+.+...-....+.+.+ ..++++++++....
T Consensus 79 gi~~~a~~~g~~~~~~~-----~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~--~~~iPvV~~~~~~~-- 149 (340)
T 1qpz_A 79 AVEKNCFQKGYTLILGN-----AWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEE--YRHIPMVVMDWGEA-- 149 (340)
T ss_dssp HHHHHHHHTTCEEEEEE-----CTTCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHT--TTTSCEEEEEESSC--
T ss_pred HHHHHHHHcCCEEEEEe-----CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHh--hCCCCEEEEecccC--
Confidence 34456667898876421 11222222222222 257999999765422223343432 24788888886431
Q ss_pred HHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 023179 142 FEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
.. +....+.... ..+..+++.|.+. ..+++.++.|.... .-+.+.|+++|..+....++..
T Consensus 150 --~~------~~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~- 218 (340)
T 1qpz_A 150 --KA------DFTDAVIDNAFEGGYMAGRYLIER--GHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQG- 218 (340)
T ss_dssp --CC------SSSEEEECCHHHHHHHHHHHHHHH--TCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCC-
T ss_pred --CC------CCCCEEEECHHHHHHHHHHHHHHC--CCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeC-
Confidence 11 2111122221 2234455666654 34789999886432 3466788889876643222221
Q ss_pred cCCCCcH---HHHHH-c---CCCCEEEEeChHHHHHHHHHhccc
Q 023179 214 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 214 ~~~~~~~---~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
+...+ +..+. + ..+++|++.+-..+-..+..+.+.
T Consensus 219 --~~~~~~~~~~~~~ll~~~~~~~ai~~~nd~~A~g~~~al~~~ 260 (340)
T 1qpz_A 219 --DFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEM 260 (340)
T ss_dssp --CSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHT
T ss_pred --CCCHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHc
Confidence 11211 12222 2 368999999887766666665543
No 66
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=90.69 E-value=1.3 Score=37.76 Aligned_cols=174 Identities=10% Similarity=0.108 Sum_probs=91.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
.+.+.++++|++++.+. ...+.+ .++..+ ...+|.||+.+.. .....++.+.+ .++++++++..
T Consensus 22 gi~~~~~~~g~~~~~~~-----~~~~~~~~~~~i~~l~--~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~ 91 (283)
T 2ioy_A 22 GAEEKAKELGYKIIVED-----SQNDSSKELSNVEDLI--QQKVDVLLINPVDSDAVVTAIKEANS---KNIPVITIDRS 91 (283)
T ss_dssp HHHHHHHHHTCEEEEEE-----CTTCHHHHHHHHHHHH--HTTCSEEEECCSSTTTTHHHHHHHHH---TTCCEEEESSC
T ss_pred HHHHHHHhcCcEEEEec-----CCCCHHHHHHHHHHHH--HcCCCEEEEeCCchhhhHHHHHHHHH---CCCeEEEecCC
Confidence 34455677898876432 112222 122222 2579999997643 22233444444 36788888853
Q ss_pred hHHHHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhC-CCeeEEEE
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLN 208 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~-G~~V~~~~ 208 (286)
.. .. .....+.... ..+..+++.|.+.....+++.++.|.... .-+.+.|++. |+++..
T Consensus 92 ~~----~~------~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~-- 159 (283)
T 2ioy_A 92 AN----GG------DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVA-- 159 (283)
T ss_dssp CS----SS------CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEE--
T ss_pred CC----Cc------ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe--
Confidence 21 01 1111111111 22444556666542124799999876532 2356778777 765532
Q ss_pred eeeeecCCCCcH---H----HHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCH
Q 023179 209 TYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGE 262 (286)
Q Consensus 209 vY~~~~~~~~~~---~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~ 262 (286)
++.. ....+ + +++.-..+++|++.+-..+--.++.+.+.+..++.++.++.
T Consensus 160 ~~~~---~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~di~viG~D~ 217 (283)
T 2ioy_A 160 KQAA---DFDRSKGLSVMENILQAQPKIDAVFAQNDEMALGAIKAIEAANRQGIIVVGFDG 217 (283)
T ss_dssp EEEC---TTCHHHHHHHHHHHHHHCSCCCEEEESSHHHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred eccC---CCCHHHHHHHHHHHHHhCCCccEEEECCchHHHHHHHHHHHCCCCCcEEEEeCC
Confidence 2211 12211 1 22222468999999988777777777654433567777753
No 67
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=90.45 E-value=6.1 Score=36.53 Aligned_cols=172 Identities=15% Similarity=0.078 Sum_probs=97.9
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCC-cEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKE 123 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~ 123 (286)
.+...++||++.+-. +...+.|++.|+ ++...+- . .+.+++.+. +.++|.|++.|..-+ +.+++.+
T Consensus 11 ~~~~~~kIl~~~~i~--~~~~~~l~~~g~~~v~~~~~----~-~~~~~l~~~---~~~~d~l~v~~~~~i~~~~l~~~-- 78 (416)
T 3k5p_A 11 LSRDRINVLLLEGIS--QTAVEYFKSSGYTNVTHLPK----A-LDKADLIKA---ISSAHIIGIRSRTQLTEEIFAAA-- 78 (416)
T ss_dssp -CGGGSCEEECSCCC--HHHHHHHHHTTCCCEEECSS----C-CCHHHHHHH---HTTCSEEEECSSCCBCHHHHHHC--
T ss_pred CCCCCcEEEEECCCC--HHHHHHHHHCCCcEEEECCC----C-CCHHHHHHH---ccCCEEEEEcCCCCCCHHHHHhC--
Confidence 455568999998653 555678888998 6655431 1 123444444 467899988775433 2233322
Q ss_pred cCCCCcEE-EEEChhh----HHHHHHhhhccCCCCceeccCCCCCHHHHHHhc-------c-------------cC----
Q 023179 124 AGTPNVRI-GVVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL-------P-------------KN---- 174 (286)
Q Consensus 124 ~~~~~~~i-~aVG~~T----a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L-------~-------------~~---- 174 (286)
+++++ .+.|-++ -+++++. |+.+...|. .+++.+++.- . +|
T Consensus 79 ---p~Lk~I~~~~~G~d~IDl~~a~~~------GI~V~n~p~-~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~ 148 (416)
T 3k5p_A 79 ---NRLIAVGCFSVGTNQVELKAARKR------GIPVFNAPF-SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTA 148 (416)
T ss_dssp ---TTCCEEEECSSCCTTBCHHHHHHT------TCCEECCSS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC
T ss_pred ---CCcEEEEECccccCccCHHHHHhc------CcEEEeCCC-cccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccC
Confidence 34454 3456555 5778888 999877664 4444433211 1 01
Q ss_pred ----CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCC--cHHHHHHcCCCCEEEEeChHH
Q 023179 175 ----GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--DQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 175 ----~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~--~~~~~~~~~~~d~IvftS~sa 239 (286)
...|+++.+++-..-...+...|+..|++|.-+..+........ ...+.+.+...|+|++.-|..
T Consensus 149 ~~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt 219 (416)
T 3k5p_A 149 IGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSS 219 (416)
T ss_dssp TTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-
T ss_pred CCCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCC
Confidence 12578899987666666788999999987754443322111100 001111234688888877754
No 68
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=90.39 E-value=1.1 Score=38.05 Aligned_cols=172 Identities=10% Similarity=-0.007 Sum_probs=91.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
..+.+.++++|+++..+.. ....+.+ . .. .+|.||+.....-...++.+.+ .++++++++.....
T Consensus 28 ~gi~~~a~~~g~~~~~~~~---~~~~~~~-----~-~~-~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~~~~~~~~-- 92 (277)
T 3cs3_A 28 EGIKKGLALFDYEMIVCSG---KKSHLFI-----P-EK-MVDGAIILDWTFPTKEIEKFAE---RGHSIVVLDRTTEH-- 92 (277)
T ss_dssp HHHHHHHHTTTCEEEEEES---TTTTTCC-----C-TT-TCSEEEEECTTSCHHHHHHHHH---TTCEEEESSSCCCS--
T ss_pred HHHHHHHHHCCCeEEEEeC---CCCHHHH-----h-hc-cccEEEEecCCCCHHHHHHHHh---cCCCEEEEecCCCC--
Confidence 3445667788988764322 1111111 1 12 7899999875322233444443 36889988864311
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecC
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (286)
. ++..+..-....+..+++.|.+. ..+++.++.+... ..-+.+.|++.|.++. ++.....
T Consensus 93 --~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~~~ 159 (277)
T 3cs3_A 93 --R------NIRQVLLDNRGGATQAIEQFVNV--GSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE---IIQGDFT 159 (277)
T ss_dssp --T------TEEEEEECHHHHHHHHHHHHHHT--TCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE---EEECCSS
T ss_pred --C------CCCEEEeCcHHHHHHHHHHHHHc--CCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee---EEeCCCC
Confidence 1 22111111112244455666654 3478999988753 2245678888998765 3222111
Q ss_pred CCCcHHHHHH-c----CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 216 HHVDQTVLKQ-A----LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 216 ~~~~~~~~~~-~----~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
.....+..+. + ..+++|++++-..+..+++.+.+.+. .++.++.++.
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 214 (277)
T 3cs3_A 160 EPSGYAAAKKILSQPQTEPVDVFAFNDEMAIGVYKYVAETNYQMGKDIRIIGFDN 214 (277)
T ss_dssp HHHHHHHHHHHTTSCCCSSEEEEESSHHHHHHHHHHHTTSSCCBTTTEEEECSSC
T ss_pred hhHHHHHHHHHHhcCCCCCcEEEEcChHHHHHHHHHHHHcCCCCCCcEEEEEeCC
Confidence 1111112222 2 25899999998888888888776532 2344555543
No 69
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=90.27 E-value=0.93 Score=39.15 Aligned_cols=196 Identities=12% Similarity=0.061 Sum_probs=99.5
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
+.+.++++|+++.... . ..+.+...+.++. ...+|.||+.+... ....++.+.+ .++++++++.....
T Consensus 24 i~~~a~~~g~~l~~~~---~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~~ 95 (306)
T 2vk2_A 24 AKSEAEKRGITLKIAD---G--QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD---AEIPVFLLDRSIDV 95 (306)
T ss_dssp HHHHHHHHTCEEEEEE---C--TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHH---TTCCEEEESSCCCC
T ss_pred HHHHHHHcCCEEEEeC---C--CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHH---CCCCEEEecCCCCC
Confidence 4556778898876432 1 1222222222221 25689999976542 2334454544 36788888864311
Q ss_pred HHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCC-CCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKK-KCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYT 211 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~-~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~ 211 (286)
.-... .+.. +... ...+..+++.|.+.... .+++.++.|... ..-+.+.|++.|. +..+.++.
T Consensus 96 ~~~~~------~~~~-V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-~~~~~~~~ 167 (306)
T 2vk2_A 96 KDKSL------YMTT-VTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN-IKIIRSQS 167 (306)
T ss_dssp SCGGG------SSEE-EECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCTT-EEEEEEEE
T ss_pred CCccc------eEEE-EecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCCC-eEEEEecc
Confidence 00000 1111 1111 12234455666554211 368999987643 2345677777875 33232222
Q ss_pred eecCCCCcH-------HHHHHc---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCHHHH--HHHHHcCCCeE
Q 023179 212 TEPVHHVDQ-------TVLKQA---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGETTA--SAAKRLGLKNV 276 (286)
Q Consensus 212 ~~~~~~~~~-------~~~~~~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~~Ta--~~l~~~G~~~v 276 (286)
. +...+ ++++.- ..+++|++.+-..+-..+..+.+.+. .++.++.++..-. ..+..-.+..+
T Consensus 168 ~---~~~~~~~~~~~~~ll~~~~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~~~~~~~~~p~lttv 244 (306)
T 2vk2_A 168 G---DFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANAS 244 (306)
T ss_dssp C---TTCHHHHHHHHHHHHHHTTTTTTCCEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEEECCHHHHHHHHTTCCCEE
T ss_pred C---CCcHHHHHHHHHHHHHhCCCCCCeeEEEECCchHHHHHHHHHHHcCCCCCCCeEEEeecCCHHHHHHHHcCCceEE
Confidence 1 22211 122222 36899999998877777777766542 2566777754332 24444445544
Q ss_pred EeC
Q 023179 277 YYP 279 (286)
Q Consensus 277 ~~~ 279 (286)
..+
T Consensus 245 ~~~ 247 (306)
T 2vk2_A 245 VEL 247 (306)
T ss_dssp EEC
T ss_pred Eec
Confidence 433
No 70
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=89.83 E-value=3.7 Score=30.54 Aligned_cols=114 Identities=14% Similarity=0.126 Sum_probs=63.1
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceE-------------EeeeCC--CchHHHHHHhcCCCccEEEEeCHHHH
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI-------------QHAQGP--DTDRLSSVLNADTIFDWIIITSPEAG 114 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~-------------~~~~~~--~~~~l~~~l~~~~~~d~IvFTS~~av 114 (286)
+++|+|+-...-+..+++.|.+.|.++..+-.- ...... +.+.+.+. .+...|.|+.+.+...
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~~~~d~vi~~~~~~~ 81 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDA--GIEDADMYIAVTGKEE 81 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHT--TTTTCSEEEECCSCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHc--CcccCCEEEEeeCCch
Confidence 467888865545667778888888766543210 000000 11111111 2467899998876542
Q ss_pred -H-HHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhc
Q 023179 115 -S-VFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (286)
Q Consensus 115 -~-~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L 171 (286)
. .+.......+...+-+.+-++...+.|++. |+...+.|+...+..+...+
T Consensus 82 ~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~------g~~~v~~p~~~~~~~~~~~~ 134 (140)
T 1lss_A 82 VNLMSSLLAKSYGINKTIARISEIEYKDVFERL------GVDVVVSPELIAANYIEKLI 134 (140)
T ss_dssp HHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHT------TCSEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHhHHHHHHHc------CCCEEECHHHHHHHHHHHHh
Confidence 2 223333444433333445677777888887 88777777665566665554
No 71
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=89.72 E-value=3.1 Score=31.49 Aligned_cols=116 Identities=13% Similarity=0.121 Sum_probs=67.0
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceE------------EeeeCC--CchHHHHHHhcCCCccEEEEeCHHHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGP--DTDRLSSVLNADTIFDWIIITSPEAG 114 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~--~~~~l~~~l~~~~~~d~IvFTS~~av 114 (286)
.+++|+|+-...-+..+++.|.+.|.++.-+-.- ...... +.+.+. .+ .+...|.+|++.++.-
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~-~~-~~~~~d~vi~~~~~~~ 82 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYR-SL-DLEGVSAVLITGSDDE 82 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHH-HS-CCTTCSEEEECCSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHH-hC-CcccCCEEEEecCCHH
Confidence 3578888877656778889999999887654211 111111 111121 12 3467899999887432
Q ss_pred HH--HHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc
Q 023179 115 SV--FLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (286)
Q Consensus 115 ~~--~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~ 172 (286)
.. ....+++.+...+-.-+-.+.-.+.|++. |....+.|....++.|...+.
T Consensus 83 ~n~~~~~~a~~~~~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~~~~~l~~~i~ 136 (141)
T 3llv_A 83 FNLKILKALRSVSDVYAIVRVSSPKKKEEFEEA------GANLVVLVADAVKQAFMDKIK 136 (141)
T ss_dssp HHHHHHHHHHHHCCCCEEEEESCGGGHHHHHHT------TCSEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCceEEEEEcChhHHHHHHHc------CCCEEECHHHHHHHHHHHHHh
Confidence 22 23334444522222234556667788888 988777776666666665553
No 72
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=89.36 E-value=1.5 Score=34.19 Aligned_cols=119 Identities=10% Similarity=0.032 Sum_probs=68.5
Q ss_pred cCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceE-------E------eeeCCCchHHHHHHhc--CCCccEEEE
Q 023179 44 ASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI-------Q------HAQGPDTDRLSSVLNA--DTIFDWIII 108 (286)
Q Consensus 44 ~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~-------~------~~~~~~~~~l~~~l~~--~~~~d~IvF 108 (286)
++..+.+++|+|.-...-+..+++.|.+.|.++..+-.- . .... +.... +.+.. +..+|.||.
T Consensus 13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~-d~~~~-~~l~~~~~~~ad~Vi~ 90 (155)
T 2g1u_A 13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVG-DAAEF-ETLKECGMEKADMVFA 90 (155)
T ss_dssp ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEES-CTTSH-HHHHTTTGGGCSEEEE
T ss_pred hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEe-cCCCH-HHHHHcCcccCCEEEE
Confidence 346777999999987666788999999999877654210 0 0000 11111 12222 356899998
Q ss_pred eCHHHH--HHHHHHHHHcCCCCcEEE--EEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc
Q 023179 109 TSPEAG--SVFLEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (286)
Q Consensus 109 TS~~av--~~~~~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~ 172 (286)
+.+... ......+.... ...+++ +.++...+.|++. |.. .+.|....+..|++.|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~l~~~------G~~-vi~p~~~~a~~l~~~l~ 150 (155)
T 2g1u_A 91 FTNDDSTNFFISMNARYMF-NVENVIARVYDPEKIKIFEEN------GIK-TICPAVLMIEKVKEFII 150 (155)
T ss_dssp CSSCHHHHHHHHHHHHHTS-CCSEEEEECSSGGGHHHHHTT------TCE-EECHHHHHHHHHHHHHH
T ss_pred EeCCcHHHHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHC------CCc-EEcHHHHHHHHHHHHHh
Confidence 877532 22233333311 233443 4567778888887 988 67776666666665554
No 73
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=89.33 E-value=1.8 Score=37.01 Aligned_cols=162 Identities=14% Similarity=0.139 Sum_probs=83.8
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHH-HHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av-~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
.+.+.++++|+++..+. . ..+.+...+.++. ...+|.||+.+...- ...++.+ ...++++++++....
T Consensus 41 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~---~~~~iPvV~~~~~~~- 111 (293)
T 2iks_A 41 YLERQARQRGYQLLIAC---S--EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRW---ANDPFPIVALDRALD- 111 (293)
T ss_dssp HHHHHHHHTTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHTT---TTSSSCEEEEESCCC-
T ss_pred HHHHHHHHCCCEEEEEc---C--CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHH---HhCCCCEEEECCccC-
Confidence 34456668898876432 1 1222221122221 257999999765421 1122322 224788888886431
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
.. ++..+..-....+..+++.|.+. ..+++.++.|... ..-+.+.|+++|.++ ..++..
T Consensus 112 ---~~------~~~~V~~d~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~--~~~~~~- 177 (293)
T 2iks_A 112 ---RE------HFTSVVGADQDDAEMLAEELRKF--PAETVLYLGALPELSVSFLREQGFRTAWKDDPREV--HFLYAN- 177 (293)
T ss_dssp ---TT------TCEEEEECHHHHHHHHHHHHHTS--CCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCE--EEEEES-
T ss_pred ---cC------CCCEEEecCHHHHHHHHHHHHHC--CCCEEEEEecCcccccHHHHHHHHHHHHHHcCCCc--cEEEcC-
Confidence 12 32221211112344556666654 3478999987643 234667888888633 223321
Q ss_pred cCCCCcH---HHHHH-c---CCCCEEEEeChHHHHHHHHHhccc
Q 023179 214 PVHHVDQ---TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 214 ~~~~~~~---~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
....+ +..+. + ..+++|++.+-..+...++.+.+.
T Consensus 178 --~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~ 219 (293)
T 2iks_A 178 --SYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRR 219 (293)
T ss_dssp --SSCHHHHHHHHHHHTTTSCCCSEEEESSHHHHHHHHHHHHHH
T ss_pred --CCChhhHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHc
Confidence 22221 12222 2 358999999888666666665543
No 74
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=89.05 E-value=1.1 Score=39.33 Aligned_cols=180 Identities=12% Similarity=0.044 Sum_probs=94.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCC--ccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEEChh
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTI--FDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~--~d~IvFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
.+.+.++++|+++..+.. ..+.+...+.++. ... +|.||+..... ....++.+.+ .++++++++..
T Consensus 26 gi~~~a~~~g~~l~~~~~-----~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~ 97 (332)
T 2rjo_A 26 GAQSFAKSVGLPYVPLTT-----EGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVEACSK---AGAYVTTIWNK 97 (332)
T ss_dssp HHHHHHHHHTCCEEEEEC-----TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHHHHHH---HTCEEEEESCC
T ss_pred HHHHHHHHcCCEEEEecC-----CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHHHHHH---CCCeEEEECCC
Confidence 445566788998765421 1222221122211 145 99999976433 2234454443 26889998864
Q ss_pred hHHH-HHHhhhccCCC-Cceecc-CC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhC-CCeeE
Q 023179 138 TASI-FEEVIQSSKCS-LDVAFS-PS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNR-GFEVV 205 (286)
Q Consensus 138 Ta~~-L~~~~~~~~~G-~~~~~~-~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~-G~~V~ 205 (286)
.... ..++ + .....+ .. ...+..+++.|.+.....++|.++.+... ..-+.+.|++. |+++.
T Consensus 98 ~~~~~~~~~------~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~ 171 (332)
T 2rjo_A 98 PKDLHPWDY------NPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLL 171 (332)
T ss_dssp CTTCCGGGG------TTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEE
T ss_pred CCcccchhc------ccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 3210 0000 1 111222 11 12244455666653123478999987643 22366888888 88775
Q ss_pred EEEeeeeecCCCCcH-------HHHHH-cCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCH
Q 023179 206 RLNTYTTEPVHHVDQ-------TVLKQ-ALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 262 (286)
Q Consensus 206 ~~~vY~~~~~~~~~~-------~~~~~-~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~ 262 (286)
.. +.. ....+ ++++. -..+++|++++-..+-.++..+.+.+. .++.++.++.
T Consensus 172 ~~--~~~---~~~~~~~~~~~~~ll~~~~~~~~aI~~~nd~~A~g~~~al~~~G~~~di~vvg~D~ 232 (332)
T 2rjo_A 172 DF--QVA---DWNSQKAFPIMQAWMTRFNSKIKGVWAANDDMALGAIEALRAEGLAGQIPVTGMDG 232 (332)
T ss_dssp EE--EEC---TTCHHHHHHHHHHHHHHHGGGEEEEEESSHHHHHHHHHHHHHTTCBTTBCEECSBC
T ss_pred ee--ccC---CCCHHHHHHHHHHHHHhcCCCeeEEEECCCchHHHHHHHHHHcCCCCCCEEEeecC
Confidence 42 221 22211 12222 236899999988877777777765432 2456666644
No 75
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=88.99 E-value=5.1 Score=37.34 Aligned_cols=199 Identities=11% Similarity=0.058 Sum_probs=113.7
Q ss_pred hHHHHHHHHhCCCcEEEeceEE------------eeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CCCC
Q 023179 62 NGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPN 128 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~------------~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~-~~~~ 128 (286)
..++.+.|++.|+++..+|=+. .-+..+ ..+++ +.+..+.+.-+..++.......+.+++. +.+-
T Consensus 184 ~~eik~lL~~~Gi~v~~l~d~s~~ld~~~~~~~~~~~~gg-~~~~e-i~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~ 261 (458)
T 1mio_B 184 MREIKRLFEAMDIPYIMFPDTSGVLDGPTTGEYKMYPEGG-TKIED-LKDTGNSDLTLSLGSYASDLGAKTLEKKCKVPF 261 (458)
T ss_dssp HHHHHHHHHHHTCCEEESSCCTTTSSCCCCSSCCSSCSCS-BCHHH-HHTTSSCSEEEEESHHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHHHHHcCCcEEEeccccccccCcccCccceeCCCC-CcHHH-HHhhccCCEEEEEchhhHHHHHHHHHHHhCCCE
Confidence 4799999999999999887433 222011 12323 3467778888888988767777777653 3332
Q ss_pred cEE-EEEC-hhhHHHHHHhhhccCCCCceeccCCCC--CHHHHHHhcccCC--CCCCEEEEEcCCCChhHHHHHHHhCCC
Q 023179 129 VRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGF 202 (286)
Q Consensus 129 ~~i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~--~~e~L~~~L~~~~--~~~~rvL~~~g~~~~~~L~~~L~~~G~ 202 (286)
+.. .-+| ..|.+.|++..+.- |.. +++.. --+.+.+.+.... ..|+|+++..+..-.-.|...|.+.|+
T Consensus 262 ~~~~~p~G~~~T~~~l~~la~~~--g~~---~~~~i~~e~~~~~~~~~d~~~~l~gkrv~i~~~~~~~~~l~~~L~elG~ 336 (458)
T 1mio_B 262 KTLRTPIGVSATDEFIMALSEAT--GKE---VPASIEEERGQLIDLMIDAQQYLQGKKVALLGDPDEIIALSKFIIELGA 336 (458)
T ss_dssp EEECCCBHHHHHHHHHHHHHHHH--CCC---CCHHHHHHHHHHHHHHHHTHHHHTTCEEEEEECHHHHHHHHHHHHTTTC
T ss_pred EecCCCcCHHHHHHHHHHHHHHH--CCC---chHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHCCC
Confidence 222 2344 68888888863222 332 11100 0112223333221 267899998887667778899999999
Q ss_pred eeEEEEeeeeecCCCCcHHHHHH-cCC---CC-EEEEe-ChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeE
Q 023179 203 EVVRLNTYTTEPVHHVDQTVLKQ-ALS---IP-VVAVA-SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNV 276 (286)
Q Consensus 203 ~V~~~~vY~~~~~~~~~~~~~~~-~~~---~d-~Ivft-S~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v 276 (286)
+|..+.+.. ..+.. ++.++. +.. .+ .|++. ....++.++...+ ..++.-|..-...+++.|..-+
T Consensus 337 ~vv~v~~~~--~~~~~-~~~~~~ll~~~~~~~~~v~~~~d~~~l~~~i~~~~------pDl~ig~~~~~~~a~k~gip~~ 407 (458)
T 1mio_B 337 IPKYVVTGT--PGMKF-QKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEG------VDLLISNTYGKFIAREENIPFV 407 (458)
T ss_dssp EEEEEEESS--CCHHH-HHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHSC------CSEEEESGGGHHHHHHHTCCEE
T ss_pred EEEEEEeCC--CCHHH-HHHHHHHHHhcCCCCCEEEECCCHHHHHHHHHhcC------CCEEEeCcchHHHHHHcCCCEE
Confidence 886665533 21111 122221 212 33 45554 6666665555432 4456666666666677787544
No 76
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=88.87 E-value=5 Score=38.22 Aligned_cols=220 Identities=13% Similarity=0.089 Sum_probs=89.0
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEece-------------EEeeeCC-CchHHHHHHhcCCCccEEEEeCHHHHH
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-------------IQHAQGP-DTDRLSSVLNADTIFDWIIITSPEAGS 115 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~-------------~~~~~~~-~~~~l~~~l~~~~~~d~IvFTS~~av~ 115 (286)
.++|+|+-...-+..+++.|.+.|.+++.+.. +...... ..++..... .+.+.|.+|.|......
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a-~i~~a~~vi~t~~D~~n 205 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGL-RVAAARSIIANLSDPDN 205 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHT-TGGGCSEEEECSCHHHH
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhc-CcccCCEEEEeCCcHHH
Confidence 46788887776778888888888887654421 1111111 112222222 35678999998877766
Q ss_pred HHHHHHHHcCCCCcEEEEE--ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCC------CC-----EEE
Q 023179 116 VFLEAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKK------KC-----TVL 182 (286)
Q Consensus 116 ~~~~~l~~~~~~~~~i~aV--G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~------~~-----rvL 182 (286)
.+.-..-+... ..++++. .+...+.|++. |....+.|+...+..|+..+...... .. .+.
T Consensus 206 ~~~~~~ar~~~-~~~iiar~~~~~~~~~l~~~------Gad~vi~p~~~~~~~la~~~~~p~~~~~~~~~~~~~~l~e~~ 278 (565)
T 4gx0_A 206 ANLCLTVRSLC-QTPIIAVVKEPVHGELLRLA------GANQVVPLTRILGRYLGIRATTCGALAHILDSFGNLQIAELP 278 (565)
T ss_dssp HHHHHHHHTTC-CCCEEEECSSGGGHHHHHHH------TCSEEECHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHhc-CceEEEEECCHHHHHHHHHc------CCCEEEChHHHHHHHHHHHhcccccccchhcccCCceEEEEE
Confidence 54333222222 6666654 45777889888 99877777655566666555331100 00 111
Q ss_pred EEcCCCChhHHHHH-HH-hCCCeeEEEEeeeeecCCC-CcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEE
Q 023179 183 YPASAKASNEIEEG-LS-NRGFEVVRLNTYTTEPVHH-VDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVAC 259 (286)
Q Consensus 183 ~~~g~~~~~~L~~~-L~-~~G~~V~~~~vY~~~~~~~-~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~ 259 (286)
+..+......|.+. +. ..| +.-+-+++....-. ..+..++ ..--.+++.++..++.|.+.+...... ..++.
T Consensus 279 v~~s~l~G~~l~el~~~~~~~--~~vi~i~r~g~~~~p~~~~~l~--~GD~L~v~g~~~~l~~~~~~~~~~~~~-~~viI 353 (565)
T 4gx0_A 279 VHGTPFAGKTIGESGIRQRTG--LSIIGVWERGSLTTPQRETVLT--EQSLLVLAGTKSQLAALEYLIGEAPED-ELIFI 353 (565)
T ss_dssp ------------------------------------------------------------------------CC-CCEEE
T ss_pred ECCCccCCCCHHHcCcchhcC--CEEEEEEECCEEeCCCCCcEeC--CCCEEEEEeCHHHHHHHHHHhcCCCCC-CCEEE
Confidence 11111111122221 11 122 22233333211111 1111121 223345567777888877766543211 33333
Q ss_pred e-----CHHHHHHHHHcCCCeEEeCCCC
Q 023179 260 I-----GETTASAAKRLGLKNVYYPTHP 282 (286)
Q Consensus 260 I-----G~~Ta~~l~~~G~~~v~~~~~p 282 (286)
+ |...++.|.+.|...+++-.++
T Consensus 354 iG~G~~G~~la~~L~~~g~~v~vid~d~ 381 (565)
T 4gx0_A 354 IGHGRIGCAAAAFLDRKPVPFILIDRQE 381 (565)
T ss_dssp ECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ECCCHHHHHHHHHHHHCCCCEEEEECCh
Confidence 3 5677888888898877665544
No 77
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=88.69 E-value=2 Score=34.15 Aligned_cols=99 Identities=16% Similarity=0.270 Sum_probs=61.8
Q ss_pred CCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEEEEeCh-----HHHHHHH
Q 023179 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASP-----SAVRSWV 244 (286)
Q Consensus 177 ~~~rvL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~IvftS~-----sav~~~~ 244 (286)
+..+|++.+-.. +...+...|+..|++|..+-.. ...+++.+. ..++|+|.+++. ..++.++
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~------~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i 90 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR------QTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLM 90 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB------CCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC------CCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHH
Confidence 345776664322 3456778899999988655443 122333332 258999998875 3566666
Q ss_pred HHhccccCCCceEEEeCHHHHH---HHHHcCCCeEEeCCC
Q 023179 245 NLISDTEQWSNSVACIGETTAS---AAKRLGLKNVYYPTH 281 (286)
Q Consensus 245 ~~~~~~~~~~~~iv~IG~~Ta~---~l~~~G~~~v~~~~~ 281 (286)
+.+++....+.++++-|....+ .+++.|...++.+..
T Consensus 91 ~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~~ 130 (161)
T 2yxb_A 91 AKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPGT 130 (161)
T ss_dssp HHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTTC
T ss_pred HHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEECCCC
Confidence 6666543335788888854432 378899987665543
No 78
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=88.48 E-value=0.22 Score=43.09 Aligned_cols=179 Identities=8% Similarity=-0.046 Sum_probs=96.4
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
..+.+.++++|+++..+.. ..+.+...+.++ ....+|.||+.+...-. . +......+++++++|.....
T Consensus 34 ~gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~---~~~~~~~~iPvV~~~~~~~~ 104 (301)
T 3miz_A 34 RGIQDWANANGKTILIANT-----GGSSEREVEIWKMFQSHRIDGVLYVTMYRRI-V---DPESGDVSIPTVMINCRPQT 104 (301)
T ss_dssp HHHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE-C---CCCCTTCCCCEEEEEEECSS
T ss_pred HHHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEecCCccH-H---HHHHHhCCCCEEEECCCCCC
Confidence 3456677788988875432 122222222221 12579999998754322 1 11112247889998865311
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeee-
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTT- 212 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~- 212 (286)
. . ++..+..-....+...++.|.+. ..+++.++.+.... .-+.+.|++.|..+....++..
T Consensus 105 ~---~------~~~~V~~D~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~ 173 (301)
T 3miz_A 105 R---E------LLPSIEPDDYQGARDLTRYLLER--GHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGM 173 (301)
T ss_dssp T---T------SSCEEEECHHHHHHHHHHHHHTT--TCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECE
T ss_pred C---C------CCCEEeeChHHHHHHHHHHHHHc--CCCeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcC
Confidence 0 0 11111111112344555666654 34689999887543 3466788888887654444444
Q ss_pred --ecCCCCcH--HHHHH-c---CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeC
Q 023179 213 --EPVHHVDQ--TVLKQ-A---LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIG 261 (286)
Q Consensus 213 --~~~~~~~~--~~~~~-~---~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG 261 (286)
........ +...+ + ..+++|++.+-..+-..++.+.+.+. .++.++.++
T Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~di~vig~D 233 (301)
T 3miz_A 174 DGPVGAENNYVFAAATEMLKQDDRPTAIMSGNDEMAIQIYIAAMALGLRIPQDVSIVGFD 233 (301)
T ss_dssp ESSTTSCEECHHHHHHHHHTSTTCCSEEEESSHHHHHHHHHHHHTTTCCHHHHCEEECSB
T ss_pred CCCcCccccHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCCeeEEEeC
Confidence 22222222 22222 2 46899999998888777777766532 134455554
No 79
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=88.37 E-value=5.7 Score=28.84 Aligned_cols=113 Identities=8% Similarity=0.028 Sum_probs=62.8
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~ 120 (286)
.+..+++||+.-... ....+.+.|++.|+.+... .+.++..+.+ ....+|.|++-- .++.+ +++.
T Consensus 3 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l-~~~~~dlvi~d~~l~~~~g~~-~~~~ 72 (130)
T 3eod_A 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLA--------ADGVDALELL-GGFTPDLMICDIAMPRMNGLK-LLEH 72 (130)
T ss_dssp CTTTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHH-TTCCCSEEEECCC-----CHH-HHHH
T ss_pred CCCCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEe--------CCHHHHHHHH-hcCCCCEEEEecCCCCCCHHH-HHHH
Confidence 566789999998765 3567788899999876431 1334444555 345689888753 23444 4555
Q ss_pred HHHcCCCCcEEE-EEChhhHHHHHHhhhccCCCCceeccCCCC-CHHHHHHhccc
Q 023179 121 WKEAGTPNVRIG-VVGAGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPK 173 (286)
Q Consensus 121 l~~~~~~~~~i~-aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~-~~e~L~~~L~~ 173 (286)
+.+.+. ..+++ ..+........+.++. |.. ++..+.. +.+.|...+..
T Consensus 73 l~~~~~-~~~ii~~t~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~~l~~~i~~ 122 (130)
T 3eod_A 73 IRNRGD-QTPVLVISATENMADIAKALRL---GVE-DVLLKPVKDLNRLREMVFA 122 (130)
T ss_dssp HHHTTC-CCCEEEEECCCCHHHHHHHHHH---CCS-EEEESCC---CHHHHHHHH
T ss_pred HHhcCC-CCCEEEEEcCCCHHHHHHHHHc---CCC-EEEeCCCCcHHHHHHHHHH
Confidence 665443 44554 4454444433333222 654 3455555 56667655543
No 80
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=88.33 E-value=1.5 Score=32.89 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=64.6
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceE------------EeeeCCCchHHHHHHhc--CCCccEEEEeCHHH
Q 023179 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA 113 (286)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~a 113 (286)
+.+++|+|+-...-+..+++.|.+.|.++..+-.- ..... |.... +.+.. ...+|.||.+.+..
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~-d~~~~-~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIA-NATEE-NELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEEC-CTTCH-HHHHTTTGGGCSEEEECCCSC
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEe-CCCCH-HHHHhcCCCCCCEEEECCCCc
Confidence 45678999987656778889999889876543210 01111 11111 12222 35688998888753
Q ss_pred --HH-HHHHHHHHcCCCCcEEE--EEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhc
Q 023179 114 --GS-VFLEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (286)
Q Consensus 114 --v~-~~~~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L 171 (286)
.. .....+.+.+.. +++ +-++...+.+++. |....+.|....+..|.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~--~ii~~~~~~~~~~~l~~~------g~~~vi~p~~~~~~~l~~~~ 136 (144)
T 2hmt_A 82 IQASTLTTLLLKELDIP--NIWVKAQNYYHHKVLEKI------GADRIIHPEKDMGVKIAQSL 136 (144)
T ss_dssp HHHHHHHHHHHHHTTCS--EEEEECCSHHHHHHHHHH------TCSEEECHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCC--eEEEEeCCHHHHHHHHHc------CCCEEECccHHHHHHHHHHH
Confidence 22 233444444443 444 4455666778877 88776666655566665554
No 81
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=88.10 E-value=2.8 Score=36.52 Aligned_cols=142 Identities=12% Similarity=0.073 Sum_probs=75.2
Q ss_pred CCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCC
Q 023179 101 TIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKK 177 (286)
Q Consensus 101 ~~~d~IvFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~ 177 (286)
..+|.||+.+... ....++.+.+ .++++++++..... .. .+.. +... ...+..+++.|.+....
T Consensus 61 ~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~~---~~------~~~~-V~~D~~~~g~~a~~~L~~~~~G 127 (325)
T 2x7x_A 61 EGVDLLIISANEAAPMTPIVEEAYQ---KGIPVILVDRKILS---DK------YTAY-IGADNYEIGRSVGNYIASSLKG 127 (325)
T ss_dssp TTCSEEEECCSSHHHHHHHHHHHHH---TTCCEEEESSCCSS---SC------SSEE-EEECHHHHHHHHHHHHHHHTTT
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHH---CCCeEEEeCCCCCC---cc------eeEE-EecCHHHHHHHHHHHHHHHcCC
Confidence 5799999976542 2334444443 36788888864311 00 1111 1111 12344455666654223
Q ss_pred CCEEEEEcCCCCh-------hHHHHHHHhC-CCeeEEEEeeeeecCCCCcH---H----HHHHcCCCCEEEEeChHHHHH
Q 023179 178 KCTVLYPASAKAS-------NEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRS 242 (286)
Q Consensus 178 ~~rvL~~~g~~~~-------~~L~~~L~~~-G~~V~~~~vY~~~~~~~~~~---~----~~~~~~~~d~IvftS~sav~~ 242 (286)
.+++.++.|.... .-+.+.|++. |+++.. ++.. ....+ + +++.-..+++|++++-..+-.
T Consensus 128 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~~~--~~~~---~~~~~~~~~~~~~ll~~~~~~~aI~~~nd~~A~g 202 (325)
T 2x7x_A 128 KGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKLID--KADA---AWERGPAEIEMDSMLRRHPKIDAVYAHNDRIAPG 202 (325)
T ss_dssp EEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEEEE--EEEC---TTSHHHHHHHHHHHHHHCSCCCEEEESSTTHHHH
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEe--eecC---CCCHHHHHHHHHHHHHhCCCCCEEEECCCchHHH
Confidence 4689999886432 3456778887 776644 2211 22211 1 222224689999998876666
Q ss_pred HHHHhccccC-CCceEEEe
Q 023179 243 WVNLISDTEQ-WSNSVACI 260 (286)
Q Consensus 243 ~~~~~~~~~~-~~~~iv~I 260 (286)
++..+.+.+. .++.++.+
T Consensus 203 ~~~al~~~Gip~dv~vig~ 221 (325)
T 2x7x_A 203 AYQAAKMAGREKEMIFVGI 221 (325)
T ss_dssp HHHHHHHTTCTTSSEEEEE
T ss_pred HHHHHHHcCCCCCeEEEEE
Confidence 6666554321 13444444
No 82
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=87.77 E-value=1.2 Score=40.69 Aligned_cols=164 Identities=11% Similarity=-0.007 Sum_probs=83.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFE 143 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~ 143 (286)
.+.+.++++|+++..+.. ..+.+.+ +.+ ....+|.||+.... ....+.+. ..+++++.+|......-.
T Consensus 45 gi~~~a~~~g~~~~i~~~-----~~~~~~i-~~l-~~~~vDGiIi~~~~--~~~~~~l~---~~~iPvV~i~~~~~~~~~ 112 (412)
T 4fe7_A 45 GVGEYLQASQSEWDIFIE-----EDFRARI-DKI-KDWLGDGVIADFDD--KQIEQALA---DVDVPIVGVGGSYHLAES 112 (412)
T ss_dssp HHHHHHHHHTCCEEEEEC-----C-CC----------CCCSEEEEETTC--HHHHHHHT---TCCSCEEEEEECCSSGGG
T ss_pred HHHHHHHhcCCCeEEEec-----CCccchh-hhH-hcCCCCEEEEecCC--hHHHHHHh---hCCCCEEEecCCcccccc
Confidence 344556678988876541 1111222 223 23579999995432 22333333 347889998865421100
Q ss_pred HhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCCh---------hHHHHHHHhCCCeeEEEEeeeeec
Q 023179 144 EVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS---------NEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 144 ~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~---------~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
.. ++..+..-....+..+++.|.+. ..+++.++.+.... .-+.+.|++.|..+..+.. ...
T Consensus 113 ~~------~~~~V~~D~~~~g~~a~~~L~~~--G~r~I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~~~ 182 (412)
T 4fe7_A 113 YP------PVHYIATDNYALVESAFLHLKEK--GVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQG--LET 182 (412)
T ss_dssp SC------SSEEEEECHHHHHHHHHHHHHHT--TCCEEEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCCEEECC--SCS
T ss_pred CC------CCCEEEeCHHHHHHHHHHHHHHc--CCceEEEecccccccccHHHHHHHHHHHHHHHcCCCcccccc--ccc
Confidence 01 22221111112344556666654 34799999887542 2366788888876532211 111
Q ss_pred CCCCcH---H----HHHHcCCCCEEEEeChHHHHHHHHHhcc
Q 023179 215 VHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISD 249 (286)
Q Consensus 215 ~~~~~~---~----~~~~~~~~d~IvftS~sav~~~~~~~~~ 249 (286)
.....+ + +++....+++|++.+-..+-..+..+.+
T Consensus 183 ~~~~~~~~~~~~~~~l~~~~~~~aI~~~nD~~A~g~~~al~~ 224 (412)
T 4fe7_A 183 APENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEH 224 (412)
T ss_dssp SCSSHHHHHHHHHHHHHHSCTTEEEEESSHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHhCCCCeEEEEEecHHHHHHHHHHHH
Confidence 111111 1 1222357899999988777666665554
No 83
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=87.56 E-value=4.1 Score=31.02 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=69.3
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceE------------EeeeCC-CchHHHHHHhcCCCccEEEEeCHHHHHH
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGP-DTDRLSSVLNADTIFDWIIITSPEAGSV 116 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~-~~~~l~~~l~~~~~~d~IvFTS~~av~~ 116 (286)
..+|+|.-...-+..+++.|.+.|.++.-+-.- ...... ......... .+...|++|.+.++....
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a-~i~~ad~vi~~~~~~~~n 85 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLA-HLECAKWLILTIPNGYEA 85 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHT-TGGGCSEEEECCSCHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhc-CcccCCEEEEECCChHHH
Confidence 356777776666788888998888877654321 111111 112222222 346789999988765543
Q ss_pred H--HHHHHHcCCCCcEEEE--EChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhc
Q 023179 117 F--LEAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (286)
Q Consensus 117 ~--~~~l~~~~~~~~~i~a--VG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L 171 (286)
. ...+++.. ...++++ -.+...+.|++. |....+.|+...++.|++.+
T Consensus 86 ~~~~~~a~~~~-~~~~iiar~~~~~~~~~l~~~------G~d~vi~p~~~~a~~i~~~l 137 (140)
T 3fwz_A 86 GEIVASARAKN-PDIEIIARAHYDDEVAYITER------GANQVVMGEREIARTMLELL 137 (140)
T ss_dssp HHHHHHHHHHC-SSSEEEEEESSHHHHHHHHHT------TCSEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHC------CCCEEECchHHHHHHHHHHh
Confidence 2 33333332 3445554 466777888888 99887878776777776654
No 84
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=87.47 E-value=0.26 Score=42.21 Aligned_cols=175 Identities=11% Similarity=0.074 Sum_probs=90.1
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
+.+.++++|+++..+. . ..+.+...+.++. ...+|.||+.+...-...++.+ .++++++++.....
T Consensus 29 i~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l-----~~iPvV~~~~~~~~-- 96 (288)
T 2qu7_A 29 ISHECQKHHLHVAVAS---S--EENEDKQQDLIETFVSQNVSAIILVPVKSKFQMKREW-----LKIPIMTLDRELES-- 96 (288)
T ss_dssp HHHHHGGGTCEEEEEE---C--TTCHHHHHHHHHHHHHTTEEEEEECCSSSCCCCCGGG-----GGSCEEEESCCCSS--
T ss_pred HHHHHHHCCCEEEEEe---C--CCCHHHHHHHHHHHHHcCccEEEEecCCCChHHHHHh-----cCCCEEEEecccCC--
Confidence 3455667888775432 1 1222222222221 2579999998654321112222 36788888864311
Q ss_pred HHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecC
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPV 215 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~ 215 (286)
. ++..+..-....+..+++.|.+. ..+++.++.+... ..-+.+.|++.|..+....++.. ..
T Consensus 97 --~------~~~~V~~d~~~~g~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~-~~ 165 (288)
T 2qu7_A 97 --T------SLPSITVDNEEAAYIATKRVLES--TCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYS-DQ 165 (288)
T ss_dssp --C------CCCEEEECHHHHHHHHHHHHHTS--SCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEEC-CS
T ss_pred --C------CCCEEEECcHHHHHHHHHHHHHc--CCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEec-cC
Confidence 1 22211111112244556666654 3478999987643 23456788888876643222210 01
Q ss_pred CC----CcH---HHHHH-c-CCCCEEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 216 HH----VDQ---TVLKQ-A-LSIPVVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 216 ~~----~~~---~~~~~-~-~~~d~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
+. ..+ +..+. + ..+|+|++.+-..+..+++.+.+.+. .++.++.++.
T Consensus 166 ~~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 224 (288)
T 2qu7_A 166 QLGTNAQIYSGYEATKTLLSKGIKGIVATNHLLLLGALQAIKESEKEIKKDVIIVGFDD 224 (288)
T ss_dssp SCSHHHHHHHHHHHHHHHHHTTCCEEEECSHHHHHHHHHHHHHSSCCBTTTBEEEEESC
T ss_pred CccccCCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHHHHHHHhCCCCCCceEEEEeCC
Confidence 11 111 11111 1 27999999998877777777665432 2455666654
No 85
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=87.18 E-value=5.2 Score=35.24 Aligned_cols=162 Identities=10% Similarity=0.054 Sum_probs=82.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++..+.. ..+.+...+.++. ...+|.||+.+...-...++.+.+ .++++++++.....
T Consensus 87 gi~~~a~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~---~~iPvV~i~~~~~~- 157 (348)
T 3bil_A 87 EIQSTASKAGLATIITNS-----NEDATTMSGSLEFLTSHGVDGIICVPNEECANQLEDLQK---QGMPVVLVDRELPG- 157 (348)
T ss_dssp HHHHHHHHTTCCEEEEEC-----TTCHHHHHHHHHHHHHTTCSCEEECCCGGGHHHHHHHHH---C-CCEEEESSCCSC-
T ss_pred HHHHHHHHcCCEEEEEeC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHh---CCCCEEEEcccCCC-
Confidence 344566678998765431 1222222222221 257899999775433334444544 36788888864311
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
.. ++..+..-....+..+++.|.+. ..+++.++.|... ..-+.+.|++.|.+... ++..
T Consensus 158 --~~------~~~~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~--v~~~-- 223 (348)
T 3bil_A 158 --DS------TIPTATSNPQPGIAAAVELLAHN--NALPIGYLSGPMDTSTGRERLEDFKAACANSKIGEQL--VFLG-- 223 (348)
T ss_dssp --C-------CCCEEEEECHHHHHHHHHHHHHT--TCCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCE--EECC--
T ss_pred --CC------CCCEEEeChHHHHHHHHHHHHHC--CCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcCccE--EEcC--
Confidence 01 22221211112244556666664 3478999988743 23466788888863221 2211
Q ss_pred CCCCcH---HHHHH-c--CCCCEEEEeChHHHHHHHHHhccc
Q 023179 215 VHHVDQ---TVLKQ-A--LSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 215 ~~~~~~---~~~~~-~--~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
+...+ +..+. + ..+ +|++.+-..+-..+..+.+.
T Consensus 224 -~~~~~~~~~~~~~ll~~~~~-ai~~~nD~~A~g~~~al~~~ 263 (348)
T 3bil_A 224 -GYEQSVGFEGATKLLDQGAK-TLFAGDSMMTIGVIEACHKA 263 (348)
T ss_dssp -CSSHHHHHHHHHHHHHTTCS-EEEESSHHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHHcCCCC-EEEEcChHHHHHHHHHHHHc
Confidence 11211 12222 1 226 77777777666666665543
No 86
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=86.77 E-value=1.2 Score=38.98 Aligned_cols=187 Identities=13% Similarity=0.067 Sum_probs=91.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH-HHHHHHHHHHHcCCCCcEEEEE-ChhhH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVV-GAGTA 139 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~-av~~~~~~l~~~~~~~~~i~aV-G~~Ta 139 (286)
.+.+.++++|+++..+.. ......+.+...+.++. ...+|.||+.+.. .....++.+.+. +++++++ +....
T Consensus 65 gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~---~ip~V~~~~~~~~ 140 (342)
T 1jx6_A 65 SFEKRLYKLNINYQLNQV-FTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDS---TNTKLILQNITTP 140 (342)
T ss_dssp HHHHHHHHTTCCEEEEEE-ECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHHHHHH---CSCEEEEETCCSC
T ss_pred HHHHHHHHcCCeEEEEec-CCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHHHHHc---CCCEEEEecCCCc
Confidence 445667788988764321 11100122211122211 2579999994322 223344445443 4566666 54211
Q ss_pred -HHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeee
Q 023179 140 -SIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYT 211 (286)
Q Consensus 140 -~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~ 211 (286)
..+... .++.. +... ...+..+++.|.+.....+++.++.|... ..-+.+.|+++|. +....++.
T Consensus 141 ~~~~~~~-----~~~~~-V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~ 213 (342)
T 1jx6_A 141 VREWDKH-----QPFLY-VGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNN-FELQSAYY 213 (342)
T ss_dssp BGGGTTS-----CCSEE-EECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHHHHC-CEEEEEEC
T ss_pred ccccccC-----CCceE-EecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhHHHHHHHHHHHhCCC-cEEEEEec
Confidence 000001 02221 1121 12244556666664212479999988754 2345677888776 43333332
Q ss_pred eecCCCCcH---H----HHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHH
Q 023179 212 TEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETT 264 (286)
Q Consensus 212 ~~~~~~~~~---~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~T 264 (286)
. ....+ + +++.-..+++|++.+-..+-..+..+.+.+..++.++.++...
T Consensus 214 ~---~~~~~~~~~~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~g~~di~vvg~D~~~ 270 (342)
T 1jx6_A 214 T---KATKQSGYDAAKASLAKHPDVDFIYACSTDVALGAVDALAELGREDIMINGWGGGS 270 (342)
T ss_dssp C---CSSHHHHHHHHHHHHHHCCCCSEEEESSHHHHHHHHHHHHHHTCTTSEEBCSBCCH
T ss_pred C---CCCHHHHHHHHHHHHHhCCCccEEEECCChhHHHHHHHHHHcCCCCcEEEEeCCCH
Confidence 2 22211 1 2222246899999998877777777665433346666665443
No 87
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=86.43 E-value=2.6 Score=39.10 Aligned_cols=202 Identities=11% Similarity=0.062 Sum_probs=111.1
Q ss_pred CeEEEeCCCCch--HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCC
Q 023179 51 PKVVVTRERGKN--GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPN 128 (286)
Q Consensus 51 ~~VLitR~~~~~--~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~ 128 (286)
.+|-|.-.-... .++.+.|++.|+++..++... ..++ +.+..+.+.-+..++.. ....+.+++.+.+-
T Consensus 184 ~~VNilG~~~~~~~~eik~lL~~~Gi~v~~~~~~~-----~~~e----i~~~~~A~~niv~~~~~-~~~A~~Le~~GiP~ 253 (437)
T 3aek_A 184 AELIVVGALPDVVEDQCLSLLTQLGVGPVRMLPAR-----RSDI----EPAVGPNTRFILAQPFL-GETTGALERRGAKR 253 (437)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCCEEEESCS-----SGGG----CCCBCTTCEEEESSTTC-HHHHHHHHHTTCEE
T ss_pred CcEEEEeCCChhHHHHHHHHHHHcCCceEEEcCCC-----CHHH----HHhhhcCcEEEEECccH-HHHHHHHHHcCCCe
Confidence 344444443333 699999999999999776432 1222 33566777777777776 44555564444432
Q ss_pred cEE-EEEC-hhhHHHHHHhhhccCCCCceeccCCC---CCHHHHHHhcccCC--CCCCEEEEEcCCCChhHHHHHH-HhC
Q 023179 129 VRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSK---ATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGL-SNR 200 (286)
Q Consensus 129 ~~i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~---~~~e~L~~~L~~~~--~~~~rvL~~~g~~~~~~L~~~L-~~~ 200 (286)
... +-+| +.|.+.|++..+.- |...... +. .--+.+...+.... ..|+|+++..+..-.-.|...| .+.
T Consensus 254 i~~~~P~G~~~T~~~l~~la~~~--g~~~~~~-e~~i~~e~~~~~~~l~~~~~~l~Gkrv~i~g~~~~~~~l~~~L~~el 330 (437)
T 3aek_A 254 IAAPFPFGEEGTTLWLKAVADAY--GVSAEKF-EAVTAAPRARAKKAIAAHLETLTGKSLFMFPDSQLEIPLARFLAREC 330 (437)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHT--TCCHHHH-HHHHHHHHHHHHHHHHTTHHHHTTCEEEECSSSSCHHHHHHHHHHTT
T ss_pred EecCCCcCHHHHHHHHHHHHHHH--CCChhhH-HHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCchHHHHHHHHHHHHc
Confidence 232 2266 67888888873211 3221100 00 00111223332221 2678999998877777889999 999
Q ss_pred CCeeEEEEe-eeeecCCCCcHHHHHHcCCCCEEEEe--ChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCe
Q 023179 201 GFEVVRLNT-YTTEPVHHVDQTVLKQALSIPVVAVA--SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKN 275 (286)
Q Consensus 201 G~~V~~~~v-Y~~~~~~~~~~~~~~~~~~~d~Ivft--S~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~ 275 (286)
|++|..+-+ |... ...++.++.+ ..+..+.. .......++... ...++.-|......+.+.|+..
T Consensus 331 G~~vv~~~~~~~~~---~~~~~~l~~l-~~~~~v~~~~d~~e~~~~i~~~------~pDliig~~~~~~p~~~~G~P~ 398 (437)
T 3aek_A 331 GMKTTEIATPFLHK---AIMAPDLALL-PSNTALTEGQDLEAQLDRHEAI------NPDLTVCGLGLANPLEAKGHAT 398 (437)
T ss_dssp CCEEEEEEESCCCH---HHHHHHHTTS-BTTCEEEEECCHHHHHHHHHHH------CCSEEEECHHHHHHHHTTTCCE
T ss_pred CCEEEEEEecCCCH---HHHHHHHHhc-CCCCEEEeCCCHHHHHHHHhcc------CCCEEEeCCccccHHHHCCCCE
Confidence 999977766 2221 1111223222 23434443 333333333333 2446666666777788888764
No 88
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=86.40 E-value=1.9 Score=36.68 Aligned_cols=175 Identities=13% Similarity=0.078 Sum_probs=88.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
.+.+.++++|+++..+. . ..+.+...+.++. ...+|.||+.... .....++.+.+ .++++++++....
T Consensus 23 gi~~~~~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 94 (290)
T 2fn9_A 23 TAKQRAEQLGYEATIFD---S--QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKE---AGIPVFCVDRGIN 94 (290)
T ss_dssp HHHHHHHHTTCEEEEEE---C--TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHHH---TTCCEEEESSCCS
T ss_pred HHHHHHHHcCCEEEEeC---C--CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHH---CCCeEEEEecCCC
Confidence 44556778898776432 1 1222221122211 2579999997643 22233444444 3678888886431
Q ss_pred HHHHHhhhccCCCCcee-ccCC-CCCHHHHHHhcccCCC----CCCE--EEEEcCCCC-------hhHHHHHHHhC-CCe
Q 023179 140 SIFEEVIQSSKCSLDVA-FSPS-KATGKILASELPKNGK----KKCT--VLYPASAKA-------SNEIEEGLSNR-GFE 203 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~-~~~~-~~~~e~L~~~L~~~~~----~~~r--vL~~~g~~~-------~~~L~~~L~~~-G~~ 203 (286)
.. +.... +... ...+..+++.|.+... ..++ ++++.|... ..-+.+.|++. |++
T Consensus 95 ----~~------~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~ 164 (290)
T 2fn9_A 95 ----AR------GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFK 164 (290)
T ss_dssp ----CS------SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEE
T ss_pred ----CC------CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCE
Confidence 11 11111 1111 1223445555554411 1356 888887543 22356778777 766
Q ss_pred eEEEEeeeeecCCCCcH---H----HHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeC
Q 023179 204 VVRLNTYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIG 261 (286)
Q Consensus 204 V~~~~vY~~~~~~~~~~---~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG 261 (286)
+.. ++.. ....+ + +++.-..+++|++.+-..+..+++.+.+.+..++.++.++
T Consensus 165 ~~~--~~~~---~~~~~~~~~~~~~ll~~~~~~~ai~~~~d~~a~g~~~al~~~g~~dv~vig~d 224 (290)
T 2fn9_A 165 MVA--QQSA---EFDRDTAYKVTEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFD 224 (290)
T ss_dssp EEE--EEEC---TTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTCEEECCB
T ss_pred EEE--eccC---CCCHHHHHHHHHHHHHhCCCCcEEEECCchHHHHHHHHHHHCCCCCeEEEEeC
Confidence 533 2221 22211 1 2222246899999998877777777665433245555554
No 89
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=86.04 E-value=2.3 Score=36.26 Aligned_cols=190 Identities=7% Similarity=-0.006 Sum_probs=95.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
.+.+.++++|+++..+- . ...+.+...+.++. ...+|.||+.... .....++.+.+ .++++++++...
T Consensus 25 g~~~~~~~~g~~~~~~~---~-~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~---~~ipvV~~~~~~- 96 (303)
T 3d02_A 25 GVVQAGKEFNLNASQVG---P-SSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARD---AGIVVLTNESPG- 96 (303)
T ss_dssp HHHHHHHHTTEEEEEEC---C-SSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHHHH---TTCEEEEESCTT-
T ss_pred HHHHHHHHcCCEEEEEC---C-CCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHH---CCCeEEEEecCC-
Confidence 34556677887664321 0 11122222222222 2579999987643 33333444443 378999998651
Q ss_pred HHHHHhhhccCCCCceecc-CC-CCCHHHHHHhcccCCCCCC-EEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEe
Q 023179 140 SIFEEVIQSSKCSLDVAFS-PS-KATGKILASELPKNGKKKC-TVLYPASAKAS-------NEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 140 ~~L~~~~~~~~~G~~~~~~-~~-~~~~e~L~~~L~~~~~~~~-rvL~~~g~~~~-------~~L~~~L~~~G~~V~~~~v 209 (286)
.... .+ ..+ .. ...+..+++.|.+.. ..+ +++++.|.... .-+.+.|+++|..+..+..
T Consensus 97 --~~~~------~~--~~v~~d~~~~g~~a~~~l~~~~-g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~ 165 (303)
T 3d02_A 97 --QPSA------NW--DVEIIDNEKFAAEYVEHMAKRM-GGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDMHEVTR 165 (303)
T ss_dssp --CTTC------SE--EEESSCHHHHHHHHHHHHHHHT-TTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTTEEESSS
T ss_pred --CCCC------ce--EEEecCHHHHHHHHHHHHHHHh-CcCceEEEEecCCCCccHHHHHHHHHHHHHhhCCCCEEEEe
Confidence 1111 22 222 21 122444556666522 224 89998876532 2355667665533332221
Q ss_pred eeeecCCCCcH---HHHHH----cCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCHH--HHHHHHHcCCC
Q 023179 210 YTTEPVHHVDQ---TVLKQ----ALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET--TASAAKRLGLK 274 (286)
Q Consensus 210 Y~~~~~~~~~~---~~~~~----~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~~--Ta~~l~~~G~~ 274 (286)
+. ......+ +..++ -..+++|++.+-..+...++.+.+.+. .++.++.++.. ..+.+.+-.+.
T Consensus 166 ~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~dv~vig~d~~~~~~~~~~~~~lt 238 (303)
T 3d02_A 166 RM--PVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKNKVAVYGMMIPSQAASLIKSGDIT 238 (303)
T ss_dssp CB--SCTTCHHHHHHHHHHHHHHCTTEEEEEESSTTHHHHHHHHHHHTTCTTTCEEEECCCHHHHHHHHHHTSSC
T ss_pred ec--CCCCCHHHHHHHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHhcCCCCCeEEEEeCCCHHHHHHHHcCCeE
Confidence 10 1112211 11221 236889998886666666666665433 25788888753 45666544454
No 90
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=86.01 E-value=8 Score=29.30 Aligned_cols=53 Identities=8% Similarity=-0.017 Sum_probs=35.3
Q ss_pred CCCCEEEEeChHHHHHH--HHHhccccCCCceEE--EeCHHHHHHHHHcCCCeEEeCC
Q 023179 227 LSIPVVAVASPSAVRSW--VNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPT 280 (286)
Q Consensus 227 ~~~d~IvftS~sav~~~--~~~~~~~~~~~~~iv--~IG~~Ta~~l~~~G~~~v~~~~ 280 (286)
...|+|+.+.+....+. ...++... ...+++ +-++.-.+.++++|...++.|+
T Consensus 70 ~~ad~vi~~~~~~~~n~~~~~~a~~~~-~~~~iiar~~~~~~~~~l~~~G~d~vi~p~ 126 (140)
T 3fwz_A 70 ECAKWLILTIPNGYEAGEIVASARAKN-PDIEIIARAHYDDEVAYITERGANQVVMGE 126 (140)
T ss_dssp GGCSEEEECCSCHHHHHHHHHHHHHHC-SSSEEEEEESSHHHHHHHHHTTCSEEEEHH
T ss_pred ccCCEEEEECCChHHHHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHCCCCEEECch
Confidence 57899998877655543 22233221 134444 5588899999999999887764
No 91
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.00 E-value=4.5 Score=32.12 Aligned_cols=117 Identities=13% Similarity=0.117 Sum_probs=70.1
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhC-CCcEEEeceE------------EeeeCCCchHHHHHHhc---CCCccEEEEeC
Q 023179 47 SNSNPKVVVTRERGKNGKLIKALAKH-RIDCLELPLI------------QHAQGPDTDRLSSVLNA---DTIFDWIIITS 110 (286)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~-G~~v~~~P~~------------~~~~~~~~~~l~~~l~~---~~~~d~IvFTS 110 (286)
.+.+++|+|.-...-+..+++.|.+. |.+|.-+-.- ..... |.... +.+.. +...|+||.++
T Consensus 36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~g-d~~~~-~~l~~~~~~~~ad~vi~~~ 113 (183)
T 3c85_A 36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISG-DATDP-DFWERILDTGHVKLVLLAM 113 (183)
T ss_dssp CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEEC-CTTCH-HHHHTBCSCCCCCEEEECC
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEc-CCCCH-HHHHhccCCCCCCEEEEeC
Confidence 46688999997666678899999998 9887654210 01111 11111 11212 46789999987
Q ss_pred HHH--HHHHHHHHHHcCCCCcEEE--EEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc
Q 023179 111 PEA--GSVFLEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (286)
Q Consensus 111 ~~a--v~~~~~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~ 172 (286)
++. .......++..+. ..+++ +.++...+.|++. |....+.|....+..|++.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~-~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~~a~~l~~~~~ 172 (183)
T 3c85_A 114 PHHQGNQTALEQLQRRNY-KGQIAAIAEYPDQLEGLLES------GVDAAFNIYSEAGSGFARHVC 172 (183)
T ss_dssp SSHHHHHHHHHHHHHTTC-CSEEEEEESSHHHHHHHHHH------TCSEEEEHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHc------CCCEEEchHHHHHHHHHHHHH
Confidence 743 2333444454432 34444 4556677888888 988767666555666665543
No 92
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=85.56 E-value=5.5 Score=33.81 Aligned_cols=183 Identities=10% Similarity=0.032 Sum_probs=96.3
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHH--HHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEA--GSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~a--v~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
.+.+.++++|+++..... ....+.+...+.++. ....|.||+.+... ....++.+.+ .++++++++....
T Consensus 22 gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 95 (288)
T 1gud_A 22 GIEDEAKTLGVSVDIFAS---PSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWK---KGIYLVNLDEKID 95 (288)
T ss_dssp HHHHHHHHHTCCEEEEEC---SSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHH---TTCEEEEESSCCC
T ss_pred HHHHHHHHcCCEEEEeCC---CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH---CCCeEEEECCCCC
Confidence 345566788988765321 011222211122211 35799999976532 2223444444 3689999987532
Q ss_pred -HHHHHhhhccCCCCce-eccC-CC-CCHHHHHHhcccCCC-CCCEEEEEcCCCCh-------hHHHHHHHhC-CCeeEE
Q 023179 140 -SIFEEVIQSSKCSLDV-AFSP-SK-ATGKILASELPKNGK-KKCTVLYPASAKAS-------NEIEEGLSNR-GFEVVR 206 (286)
Q Consensus 140 -~~L~~~~~~~~~G~~~-~~~~-~~-~~~e~L~~~L~~~~~-~~~rvL~~~g~~~~-------~~L~~~L~~~-G~~V~~ 206 (286)
...++. |... .++. .. ..+...++.|.+... ..+++.++.|.... .-+.+.|++. |+.+..
T Consensus 96 ~~~~~~~------~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~ 169 (288)
T 1gud_A 96 MDNLKKA------GGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVA 169 (288)
T ss_dssp HHHHHHT------TCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred ccccccc------CCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEE
Confidence 222333 3322 2232 21 123444555555411 13799999886542 2356788877 765532
Q ss_pred EEeeeeecCCCCcH---H----HHHHcCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCHH
Q 023179 207 LNTYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGET 263 (286)
Q Consensus 207 ~~vY~~~~~~~~~~---~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~~ 263 (286)
++. .....+ + +++.-..+++|++++-..+--.++.+.+.+. .++.++.++..
T Consensus 170 --~~~---~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~G~~~dv~vvGfD~~ 229 (288)
T 1gud_A 170 --SQP---ADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGI 229 (288)
T ss_dssp --EEE---CTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCC
T ss_pred --eec---CCccHHHHHHHHHHHHHhCCCceEEEECCCchHHHHHHHHHhcCCCCCeEEEEeCCC
Confidence 221 122221 1 2222246899999998887777777766542 25777777543
No 93
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=84.73 E-value=0.97 Score=40.25 Aligned_cols=148 Identities=9% Similarity=0.033 Sum_probs=82.0
Q ss_pred CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCC
Q 023179 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKC 179 (286)
Q Consensus 100 ~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~ 179 (286)
...+|.||+.+...-...++.+.+. +++++++|.... .. ++..+..-....+...++.|.+. ..+
T Consensus 126 ~~~vdGiIi~~~~~~~~~~~~l~~~---~iPvV~i~~~~~----~~------~~~~V~~D~~~~~~~a~~~L~~~--G~r 190 (366)
T 3h5t_A 126 NAAVDGVVIYSVAKGDPHIDAIRAR---GLPAVIADQPAR----EE------GMPFIAPNNRKAIAPAAQALIDA--GHR 190 (366)
T ss_dssp TCCCSCEEEESCCTTCHHHHHHHHH---TCCEEEESSCCS----CT------TCCEEEECHHHHTHHHHHHHHHT--TCC
T ss_pred hCCCCEEEEecCCCChHHHHHHHHC---CCCEEEECCccC----CC------CCCEEEeChHHHHHHHHHHHHHC--CCC
Confidence 4679999998764433344545443 678889987431 11 33222211112234455666654 346
Q ss_pred EEEEEcCC------------------------CChhHHHHHHHhCCCeeEEEEeeeeecCC-CCcH----HHHHHcCCCC
Q 023179 180 TVLYPASA------------------------KASNEIEEGLSNRGFEVVRLNTYTTEPVH-HVDQ----TVLKQALSIP 230 (286)
Q Consensus 180 rvL~~~g~------------------------~~~~~L~~~L~~~G~~V~~~~vY~~~~~~-~~~~----~~~~~~~~~d 230 (286)
++.|+.+. ....-+.+.|+++|..+....++...... .... .+++.-..++
T Consensus 191 ~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 270 (366)
T 3h5t_A 191 KIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLT 270 (366)
T ss_dssp SEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCC
T ss_pred cEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCc
Confidence 88888721 11235678888999876543333221111 1111 1222224799
Q ss_pred EEEEeChHHHHHHHHHhccccC---CCceEEEeCH
Q 023179 231 VVAVASPSAVRSWVNLISDTEQ---WSNSVACIGE 262 (286)
Q Consensus 231 ~IvftS~sav~~~~~~~~~~~~---~~~~iv~IG~ 262 (286)
+|++.+-..+-..+..+.+.+. .++.++.++.
T Consensus 271 ai~~~nD~~A~g~~~al~~~G~~vP~disvigfD~ 305 (366)
T 3h5t_A 271 AVLCTVDALAFGVLEYLKSVGKSAPADLSLTGFDG 305 (366)
T ss_dssp EEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEEC
T ss_pred EEEECCcHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 9999998877777777766542 2566777754
No 94
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=83.70 E-value=14 Score=31.94 Aligned_cols=182 Identities=10% Similarity=0.029 Sum_probs=91.6
Q ss_pred CCeEEEeCCCCc------hHHHHHHHHhCCCc----EEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHH
Q 023179 50 NPKVVVTRERGK------NGKLIKALAKHRID----CLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVF 117 (286)
Q Consensus 50 g~~VLitR~~~~------~~~l~~~L~~~G~~----v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~ 117 (286)
-.+|-|+.-.+. .+-+.+.|++.|+. +.. - +. ....|...+.+..++ -.++|.||-.+..+....
T Consensus 8 ~~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~-~-~~-~a~gd~~~~~~~~~~l~~~~~DlIiai~t~aa~a~ 84 (302)
T 3lkv_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEF-D-YK-TAQGNPAIAVQIARQFVGENPDVLVGIATPTAQAL 84 (302)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEE-E-EE-ECTTCHHHHHHHHHHHHTTCCSEEEEESHHHHHHH
T ss_pred CceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEE-E-EE-eCCCCHHHHHHHHHHHHhcCCcEEEEcCCHHHHHH
Confidence 356777754321 23567788888864 332 1 11 222343333333322 367998887776676655
Q ss_pred HHHHHHcCCCCcEEEEECh---hhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-----
Q 023179 118 LEAWKEAGTPNVRIGVVGA---GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA----- 189 (286)
Q Consensus 118 ~~~l~~~~~~~~~i~aVG~---~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~----- 189 (286)
.+. ..+++++..|- ..+...... ...|-++.-+.+....+.-++.+.+.....+++.++.....
T Consensus 85 ~~~-----~~~iPVVf~~v~dp~~~~l~~~~---~~~g~nvtGv~~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~ 156 (302)
T 3lkv_A 85 VSA-----TKTIPIVFTAVTDPVGAKLVKQL---EQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVS 156 (302)
T ss_dssp HHH-----CSSSCEEEEEESCTTTTTSCSCS---SSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHH
T ss_pred Hhh-----cCCCCeEEEecCCcchhhhcccc---cCCCCcEEEEECCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccHHH
Confidence 442 13455554432 111111111 11132222222333344444666555545578877644321
Q ss_pred -hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH-cCCCCEEEEeChHHHHHHHHH
Q 023179 190 -SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ-ALSIPVVAVASPSAVRSWVNL 246 (286)
Q Consensus 190 -~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~-~~~~d~IvftS~sav~~~~~~ 246 (286)
.+.+.+.+++.|+++.+..+.... ...+..+. ..+.|+++...-..+...++.
T Consensus 157 ~~~~~~~~~~~~g~~~v~~~~~~~~----~~~~~~~~l~~~~d~i~~~~d~~~~~~~~~ 211 (302)
T 3lkv_A 157 LMELLKLSAAKHGIKLVEATALKSA----DVQSATQAIAEKSDVIYALIDNTVASAIEG 211 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSGG----GHHHHHHHHHTTCSEEEECSCHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCEEEEEecCChH----HHHHHHHhccCCeeEEEEeCCcchhhHHHH
Confidence 345677888899988665543321 12223332 368999887766555444443
No 95
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=83.58 E-value=0.86 Score=38.76 Aligned_cols=177 Identities=12% Similarity=0.068 Sum_probs=89.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHH--HHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av--~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
.+.+.++++|+++..+..- ...+.+...+.++. ...+|.||+.+...- ...++.+.+ .++++++++....
T Consensus 28 gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~~~~---~~iPvV~~~~~~~ 101 (289)
T 3brs_A 28 GAQMAAKEYEIKLEFMAPE---KEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAKEIKD---AGIKLIVIDSGMK 101 (289)
T ss_dssp HHHHHHHHHTCEEEECCCS---STTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHTTTGG---GTCEEEEESSCCS
T ss_pred HHHHHHHHcCCEEEEecCC---CCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHH---CCCcEEEECCCCC
Confidence 3455667789876543221 01121211122211 257999999765432 122332222 4788999986431
Q ss_pred HHHHHhhhccCCC-CceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEee
Q 023179 140 SIFEEVIQSSKCS-LDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTY 210 (286)
Q Consensus 140 ~~L~~~~~~~~~G-~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY 210 (286)
.. + +.. +... ...+..+++.|.+.....+++.++.+... ..-+.+.|++.|..+.. ++
T Consensus 102 ----~~------~~~~~-V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~--~~ 168 (289)
T 3brs_A 102 ----QD------IADIT-VATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEA--IY 168 (289)
T ss_dssp ----SC------CCSEE-EECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEE--EE
T ss_pred ----CC------cceEE-EeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEe--ee
Confidence 11 1 221 2222 12244556666654212479999988643 23456778888865433 22
Q ss_pred eeecCCCCcH---HH----HHHcCCCCEEEEeChHHHHHHHHHhccccC-CCceEEEeCH
Q 023179 211 TTEPVHHVDQ---TV----LKQALSIPVVAVASPSAVRSWVNLISDTEQ-WSNSVACIGE 262 (286)
Q Consensus 211 ~~~~~~~~~~---~~----~~~~~~~d~IvftS~sav~~~~~~~~~~~~-~~~~iv~IG~ 262 (286)
.. +...+ +. ++.-..+++|++++-..+...++.+.+.+. .++.++.++.
T Consensus 169 ~~---~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~G~~~di~vvg~d~ 225 (289)
T 3brs_A 169 YC---DSNYDKAYDGTVELLTKYPDISVMVGLNQYSATGAARAIKDMSLEAKVKLVCIDS 225 (289)
T ss_dssp EC---TTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEEES
T ss_pred cC---CCCHHHHHHHHHHHHHhCCCceEEEECCCcchHHHHHHHHhcCCCCCEEEEEECC
Confidence 21 22221 11 221246899999988777767766655432 2355555543
No 96
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=83.39 E-value=13 Score=28.37 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=66.0
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceE----------------EeeeCC--CchHHHHHHhcCCCccEEEEeCH
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI----------------QHAQGP--DTDRLSSVLNADTIFDWIIITSP 111 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~----------------~~~~~~--~~~~l~~~l~~~~~~d~IvFTS~ 111 (286)
+++|+|+-...-+..+++.|.+.|.++..+--- ...... +.+.+.+. .+...|++|.+.+
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~~ 80 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKA--GIDRCRAILALSD 80 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHH--TTTTCSEEEECSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHc--ChhhCCEEEEecC
Confidence 467888876556778888888888877654221 111111 11222222 3678899999876
Q ss_pred HHHHH-HH-HHHHHcCCCCcEEE--EEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc
Q 023179 112 EAGSV-FL-EAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (286)
Q Consensus 112 ~av~~-~~-~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~ 172 (286)
+.-.. .. ...++.. ...+++ +-++...+.|++. |....+.|....++.|+..+.
T Consensus 81 ~d~~n~~~~~~a~~~~-~~~~ii~~~~~~~~~~~l~~~------G~~~vi~p~~~~~~~l~~~~~ 138 (153)
T 1id1_A 81 NDADNAFVVLSAKDMS-SDVKTVLAVSDSKNLNKIKMV------HPDIILSPQLFGSEILARVLN 138 (153)
T ss_dssp CHHHHHHHHHHHHHHT-SSSCEEEECSSGGGHHHHHTT------CCSEEECHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHc------CCCEEEcHHHHHHHHHHHHHh
Confidence 44322 22 2223321 234444 4567777888887 988667666555666665553
No 97
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=83.21 E-value=10 Score=33.22 Aligned_cols=149 Identities=14% Similarity=0.040 Sum_probs=83.0
Q ss_pred CCccEEEEeC-HHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCC
Q 023179 101 TIFDWIIITS-PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (286)
Q Consensus 101 ~~~d~IvFTS-~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~ 178 (286)
...|.||... ..........+.+. +++++..+..+.. +.... .. ..-..+.+.. ..+..+++.|.+. ..
T Consensus 81 ~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~~~~-~~~~~--~~-~~~~~~~~~~~~~~~~~~~~l~~~--g~ 151 (375)
T 4evq_A 81 EKADVLIGTVHSGVAMAMVKIARED---GIPTIVPNAGADI-ITRAM--CA-PNVFRTSFANGQIGRATGDAMIKA--GL 151 (375)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---CCCEEESSCCCGG-GGTTT--CC-TTEEESSCCHHHHHHHHHHHHHHT--TC
T ss_pred CCceEEEcCCccHHHHHHHHHHHHc---CceEEecCCCChh-hcccC--CC-CCEEEeeCChHhHHHHHHHHHHHc--CC
Confidence 3689998753 44444455555543 5667766644322 22210 00 1111112221 2234566666654 44
Q ss_pred CEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEE-eChHHHHHHHHHhccc
Q 023179 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISDT 250 (286)
Q Consensus 179 ~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~Ivf-tS~sav~~~~~~~~~~ 250 (286)
+||.++..+.. .+.+.+.|++.|+++.....|... .......++.+ ..+|+|++ .+...+..++..+.+.
T Consensus 152 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~ 229 (375)
T 4evq_A 152 KKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFP--DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAA 229 (375)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHT
T ss_pred cEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCC--CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHc
Confidence 78888865442 456778999999988655555432 12222333322 37899988 7888888888887765
Q ss_pred cCCCceEEEeC
Q 023179 251 EQWSNSVACIG 261 (286)
Q Consensus 251 ~~~~~~iv~IG 261 (286)
+ ...+++..|
T Consensus 230 g-~~vp~~~~~ 239 (375)
T 4evq_A 230 N-LGIPLWGPG 239 (375)
T ss_dssp T-CCCCEEEEG
T ss_pred C-CCceEEecC
Confidence 4 246777665
No 98
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=83.13 E-value=3.9 Score=32.50 Aligned_cols=106 Identities=9% Similarity=0.036 Sum_probs=68.1
Q ss_pred CCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--C-CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEE
Q 023179 58 ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--D-TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVV 134 (286)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~-~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aV 134 (286)
..++..++.+.|+++|+.+..+. -.+ ........++. + ..+|.++..+..-...|...+.+.+.+.-.++.|
T Consensus 69 ~~~g~~e~L~~L~~~G~~v~ivT---~~~--~~~~~~~~l~~~gl~~~f~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~i 143 (187)
T 2wm8_A 69 LYPEVPEVLKRLQSLGVPGAAAS---RTS--EIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFF 143 (187)
T ss_dssp CCTTHHHHHHHHHHHTCCEEEEE---CCS--CHHHHHHHHHHTTCTTTEEEEEESSSCHHHHHHHHHHHHCCCGGGEEEE
T ss_pred cchhHHHHHHHHHHCCceEEEEe---CCC--ChHHHHHHHHHcCcHhhcceeEEEeCchHHHHHHHHHHcCCChHHEEEE
Confidence 34567788889999998765332 111 01222333332 2 3478776666666777777777777777778999
Q ss_pred ChhhHH--HHHHhhhccCCCCceeccCCCCCHHHHHHhcccC
Q 023179 135 GAGTAS--IFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (286)
Q Consensus 135 G~~Ta~--~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~ 174 (286)
|..... ++++. |+.+..+....+.+.+.+.|..+
T Consensus 144 gD~~~Di~~a~~a------G~~~i~v~~g~~~~~~~~~l~~~ 179 (187)
T 2wm8_A 144 DDERRNIVDVSKL------GVTCIHIQNGMNLQTLSQGLETF 179 (187)
T ss_dssp ESCHHHHHHHHTT------TCEEEECSSSCCHHHHHHHHHHH
T ss_pred eCCccChHHHHHc------CCEEEEECCCCChHHHHHHHHHH
Confidence 988654 45556 99887777777777776666443
No 99
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=82.36 E-value=6.6 Score=33.87 Aligned_cols=167 Identities=10% Similarity=0.016 Sum_probs=81.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
-+.+.++++|+++..+.. ..+.+...+.++. ...+|.||+++..--..+.+ +. ...++++++.++...
T Consensus 28 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~l~~l~~~~vdgIi~~~~~~~~~~~~-~~-~~~p~~p~v~id~~~--- 97 (296)
T 2hqb_A 28 GLLNIHSNLDVDVVLEEG-----VNSEQKAHRRIKELVDGGVNLIFGHGHAFAEYFST-IH-NQYPDVHFVSFNGEV--- 97 (296)
T ss_dssp HHHHHHHHSCCEEEEECC-----CCSHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHT-TT-TSCTTSEEEEESCCC---
T ss_pred HHHHHHHHhCCeEEEEeC-----CCCHHHHHHHHHHHHHCCCCEEEEcCHhHHHHHHH-HH-HHCCCCEEEEEecCc---
Confidence 445667788987754321 1121222222222 25799999998654333222 11 122478899987532
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC---hhHHHHHHHhCCCeeEEEEeeeeecCC-C
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA---SNEIEEGLSNRGFEVVRLNTYTTEPVH-H 217 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~---~~~L~~~L~~~G~~V~~~~vY~~~~~~-~ 217 (286)
... .+.. +......+.-++-.+..+....++|.|+.|... ..-+.+.+++.|.+ ....+|...... .
T Consensus 98 -~~~------~~~~-v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~~r~~Gf~~~~~~~~~~-~~~~~~~~~~~~~~ 168 (296)
T 2hqb_A 98 -KGE------NITS-LHFEGYAMGYFGGMVAASMSETHKVGVIAAFPWQPEVEGFVDGAKYMNES-EAFVRYVGEWTDAD 168 (296)
T ss_dssp -CSS------SEEE-EEECCHHHHHHHHHHHHHTCSSSEEEEEESCTTCHHHHHHHHHHHHTTCC-EEEEEECSSSSCHH
T ss_pred -CCC------CEEE-EEechHHHHHHHHHHHHhhccCCeEEEEcCcCchhhHHHHHHHHHHhCCC-eEEEEeeccccCHH
Confidence 111 2222 222222222233222222223479999988642 34466888888876 444445321111 1
Q ss_pred CcHHHHHH-c-CCCCEEEEeChHHHHHHHHHhcc
Q 023179 218 VDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLISD 249 (286)
Q Consensus 218 ~~~~~~~~-~-~~~d~IvftS~sav~~~~~~~~~ 249 (286)
...+..+. + ..+|+|+..+-..+--.++.+.+
T Consensus 169 ~g~~~a~~ll~~~~daI~~~~D~~a~Gv~~a~~e 202 (296)
T 2hqb_A 169 KALELFQELQKEQVDVFYPAGDGYHVPVVEAIKD 202 (296)
T ss_dssp HHHHHHHHHHTTTCCEEECCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHH
Confidence 11112222 2 35899888877655544444443
No 100
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=81.90 E-value=1.7 Score=33.59 Aligned_cols=88 Identities=16% Similarity=0.234 Sum_probs=54.1
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChH-----HHHHHHHHhccccCCCceEEEeCHH-
Q 023179 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-----AVRSWVNLISDTEQWSNSVACIGET- 263 (286)
Q Consensus 190 ~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~s-----av~~~~~~~~~~~~~~~~iv~IG~~- 263 (286)
...+...|+..|++|..+-. .++.+...+... ..++|+|.+++.. .++.+.+.+++....+.++++-|..
T Consensus 20 ~~~v~~~l~~~G~~Vi~lG~--~~p~e~~v~~a~--~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG~~~ 95 (137)
T 1ccw_A 20 NKILDHAFTNAGFNVVNIGV--LSPQELFIKAAI--ETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGGNIV 95 (137)
T ss_dssp HHHHHHHHHHTTCEEEEEEE--EECHHHHHHHHH--HHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEESCS
T ss_pred HHHHHHHHHHCCCEEEECCC--CCCHHHHHHHHH--hcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEECCCc
Confidence 44667889999999876655 233322221112 1478888887743 2445555665543335788887854
Q ss_pred --------HHHHHHHcCCCeEEeCCC
Q 023179 264 --------TASAAKRLGLKNVYYPTH 281 (286)
Q Consensus 264 --------Ta~~l~~~G~~~v~~~~~ 281 (286)
..+.+++.|+..++-+..
T Consensus 96 ~~~~~~~~~~~~~~~~G~d~~~~~g~ 121 (137)
T 1ccw_A 96 VGKQHWPDVEKRFKDMGYDRVYAPGT 121 (137)
T ss_dssp SSSCCHHHHHHHHHHTTCSEECCTTC
T ss_pred CchHhhhhhHHHHHHCCCCEEECCCC
Confidence 255699999987665543
No 101
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=81.58 E-value=1.5 Score=38.57 Aligned_cols=164 Identities=10% Similarity=0.010 Sum_probs=85.1
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
..+.+.++++|+++..+. . ..+.+...+.++ ....+|.||+.....-..+.+.+.+ .+++++.++....
T Consensus 82 ~gi~~~a~~~g~~~~~~~---~--~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~---~~iPvV~~~~~~~- 152 (339)
T 3h5o_A 82 TGIETVLDAAGYQMLIGN---S--HYDAGQELQLLRAYLQHRPDGVLITGLSHAEPFERILSQ---HALPVVYMMDLAD- 152 (339)
T ss_dssp HHHHHHHHHTTCEEEEEE---C--TTCHHHHHHHHHHHHTTCCSEEEEECSCCCTTHHHHHHH---TTCCEEEEESCCS-
T ss_pred HHHHHHHHHCCCEEEEEe---C--CCChHHHHHHHHHHHcCCCCEEEEeCCCCCHHHHHHHhc---CCCCEEEEeecCC-
Confidence 345566778898876432 1 122222222222 1367999999875443334444444 3677888864321
Q ss_pred HHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCCEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEeeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKCTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
.. .. . +... ...+..+++.|.+. ..+++.++.+... ..-+.+.|++.|.......+..
T Consensus 153 ---~~------~~-~-V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~-- 217 (339)
T 3h5o_A 153 ---DG------RC-C-VGFSQEDAGAAITRHLLSR--GKRRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLD-- 217 (339)
T ss_dssp ---SS------CC-E-EECCHHHHHHHHHHHHHHT--TCCSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEE--
T ss_pred ---CC------Ce-E-EEECHHHHHHHHHHHHHHC--CCCeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEe--
Confidence 11 11 1 1111 12234455666554 3468999887642 2346678888887221111111
Q ss_pred cCCCCcH---H----HHHHcCCCCEEEEeChHHHHHHHHHhccc
Q 023179 214 PVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 214 ~~~~~~~---~----~~~~~~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
......+ + +++.-..+++|++.+-..+-..+..+.+.
T Consensus 218 ~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~ 261 (339)
T 3h5o_A 218 PQPSSMQMGADMLDRALAERPDCDALFCCNDDLAIGALARSQQL 261 (339)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHcCCCCCcEEEECChHHHHHHHHHHHHc
Confidence 1122211 1 22222478999999888777666666554
No 102
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=81.29 E-value=3.7 Score=33.77 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=45.8
Q ss_pred CCEEEEEcCCCC------------hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeC-------hH
Q 023179 178 KCTVLYPASAKA------------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS-------PS 238 (286)
Q Consensus 178 ~~rvL~~~g~~~------------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS-------~s 238 (286)
..+||++-|.-. .+.+.+.+++.|.+|+.+.+|+ .++.+...+.+...|.|||.+ |.
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~----~~d~~~~~~~l~~AD~iV~~~P~y~~s~pa 87 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADS----DYDVKAEVQNFLWADVVIWQMPGWWMGAPW 87 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSS----CCCHHHHHHHHHHCSEEEEEEECBTTBCCH
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCc----cccHHHHHHHHHhCCEEEEECCccccCCCH
Confidence 357777755443 1245677777899999999986 223344555567899999988 57
Q ss_pred HHHHHHHH
Q 023179 239 AVRSWVNL 246 (286)
Q Consensus 239 av~~~~~~ 246 (286)
.+++|++.
T Consensus 88 ~LK~~iDr 95 (204)
T 2amj_A 88 TVKKYIDD 95 (204)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 89999995
No 103
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=81.28 E-value=14 Score=27.04 Aligned_cols=113 Identities=13% Similarity=0.167 Sum_probs=66.1
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~ 124 (286)
....+++|||.-... ....+.+.|+..|+++..+ .+.++....+.. ..+|.|+....++.+ +++.+.+.
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l~~-~~~dlvi~~~~~g~~-~~~~l~~~ 83 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVT--------ESLEDGEYLMDI-RNYDLVMVSDKNALS-FVSRIKEK 83 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHHHH-SCCSEEEECSTTHHH-HHHHHHHH
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEe--------CCHHHHHHHHHc-CCCCEEEEcCccHHH-HHHHHHhc
Confidence 445578999987664 3567788888888754321 122344444533 568999943445554 56667665
Q ss_pred CCC-CcEEEEEC-hhhHHHHHHhhhccCCCCceeccCCCC-CHHHHHHhcccC
Q 023179 125 GTP-NVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKN 174 (286)
Q Consensus 125 ~~~-~~~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~-~~e~L~~~L~~~ 174 (286)
. .++++++. ........+.++. |.. ++..+.. +.+.|...|...
T Consensus 84 --~~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~kP~~~~~~l~~~i~~~ 130 (137)
T 2pln_A 84 --HSSIVVLVSSDNPTSEEEVHAFEQ---GAD-DYIAKPYRSIKALVARIEAR 130 (137)
T ss_dssp --STTSEEEEEESSCCHHHHHHHHHT---TCS-EEEESSCSCHHHHHHHHHHH
T ss_pred --CCCccEEEEeCCCCHHHHHHHHHc---CCc-eeeeCCCCCHHHHHHHHHHH
Confidence 4 66766654 3333333333222 554 4556667 888887777543
No 104
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=81.16 E-value=2.9 Score=36.86 Aligned_cols=161 Identities=8% Similarity=0.060 Sum_probs=81.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHH-HHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAG-SVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av-~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
.+.+.++++|+++..... . ..+.+...+.++. ...+|.||+.++..- ......+. ..++++++++...
T Consensus 82 gi~~~a~~~g~~~~~~~~---~-~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~~~---~~~iPvV~i~~~~-- 152 (349)
T 1jye_A 82 AILSRADQLGASVVVSMV---E-RSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAA---CTNVPALFLDVSD-- 152 (349)
T ss_dssp HHHHHHHHTTCEEEEEEC---C-SSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHHH---TTTSCEEESSSCT--
T ss_pred HHHHHHHHcCCEEEEEeC---C-CCcHHHHHHHHHHHHHCCCCEEEEecCCCChhHHHHHHh---hCCCCEEEEcccC--
Confidence 344566788988764321 1 1111211122211 367999999744221 22222222 2468899888531
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEEEEeeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKAS-------NEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
.. ++..+..-....+...++.|.+. ..+++.++.|.... .-+.+.|++.|+.+.. ++..
T Consensus 153 ---~~------~~~~V~~d~~~~~~~a~~~L~~~--G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~--~~~~- 218 (349)
T 1jye_A 153 ---QT------PINSIIFSHEDGTRLGVEHLVAL--GHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIA--EREG- 218 (349)
T ss_dssp ---TS------SSCEEEECHHHHHHHHHHHHHHH--TCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSE--EEEC-
T ss_pred ---CC------CCCEEEEchHHHHHHHHHHHHHC--CCCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc--cccC-
Confidence 12 32221211111233445566554 34789999886532 3466888888876532 2211
Q ss_pred cCCCCcH---H----HHHHcCCCCEEEEeChHHHHHHHHHhcc
Q 023179 214 PVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISD 249 (286)
Q Consensus 214 ~~~~~~~---~----~~~~~~~~d~IvftS~sav~~~~~~~~~ 249 (286)
+...+ + +++.-..+++|++.+-..+-..+..+.+
T Consensus 219 --~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~ 259 (349)
T 1jye_A 219 --DWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITE 259 (349)
T ss_dssp --CSSHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHH
T ss_pred --CCChHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHH
Confidence 22211 1 1211136899999887766666665544
No 105
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=81.15 E-value=7.2 Score=34.06 Aligned_cols=159 Identities=17% Similarity=0.036 Sum_probs=86.5
Q ss_pred CCccEEEE-eCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCC
Q 023179 101 TIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (286)
Q Consensus 101 ~~~d~IvF-TS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~ 178 (286)
...|.||- .++.........+.+. +++++..+..+...-... ..-..+.+.. .....+++.+.+. ..
T Consensus 71 ~~v~~iiG~~~s~~~~~~~~~~~~~---~ip~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~--g~ 139 (368)
T 4eyg_A 71 DKVNVIAGFGITPAALAAAPLATQA---KVPEIVMAAGTSIITERS------PYIVRTSFTLAQSSIIIGDWAAKN--GI 139 (368)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---TCCEEESSCCCGGGGGGC------TTEEESSCCHHHHHHHHHHHHHHT--TC
T ss_pred CCcEEEECCCccHHHHHHHHHHHhC---CceEEeccCCChhhccCC------CCEEEecCChHHHHHHHHHHHHHc--CC
Confidence 67888884 4455555555555553 566776654332221111 2211122221 1234566666554 34
Q ss_pred CEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEE-eChHHHHHHHHHhccc
Q 023179 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISDT 250 (286)
Q Consensus 179 ~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~Ivf-tS~sav~~~~~~~~~~ 250 (286)
+|+.++..+.. .+.+.+.|++.|+++.....|..... .....+..+ ..+|+|++ .+...+..++..+.+.
T Consensus 140 ~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~--d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~ 217 (368)
T 4eyg_A 140 KKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANP--DFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAER 217 (368)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSC--CCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHT
T ss_pred CEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCC--cHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHc
Confidence 78877764432 35678889999998876665554322 222333322 47899888 6666777777777665
Q ss_pred cCC--CceEEEeCH-HHHHHHHHcC
Q 023179 251 EQW--SNSVACIGE-TTASAAKRLG 272 (286)
Q Consensus 251 ~~~--~~~iv~IG~-~Ta~~l~~~G 272 (286)
+.. .++++..+. .....++..|
T Consensus 218 g~~~~~v~~~~~~~~~~~~~~~~~g 242 (368)
T 4eyg_A 218 GLDKSGIKVIGPGDVMDDDLLNSMG 242 (368)
T ss_dssp TGGGTTCEEEEETTTTCHHHHTTCC
T ss_pred CCCcCCceEEecCcccCHHHHHhhh
Confidence 321 266776652 3334444433
No 106
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=80.86 E-value=2.5 Score=36.70 Aligned_cols=185 Identities=13% Similarity=0.093 Sum_probs=93.6
Q ss_pred HHHHHHHhCCCcEEEe-ceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHH--HHHHHHHHHHHcCCCCcEEEEECh
Q 023179 64 KLIKALAKHRIDCLEL-PLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPE--AGSVFLEAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~-P~~~~~~~~~~~----~l~~~l~~~~~~d~IvFTS~~--av~~~~~~l~~~~~~~~~i~aVG~ 136 (286)
.+.+.++++|+++... +. ..+.+ .++..+ ...+|.||+.+.. ++...++.+.+ .++++++++.
T Consensus 24 g~~~~~~~~g~~~~~~~~~-----~~d~~~q~~~i~~li--~~~vdgiii~~~~~~~~~~~~~~a~~---~gipvV~~d~ 93 (316)
T 1tjy_A 24 GAQEAGKALGIDVTYDGPT-----EPSVSGQVQLVNNFV--NQGYDAIIVSAVSPDGLCPALKRAMQ---RGVKILTWDS 93 (316)
T ss_dssp HHHHHHHHHTCEEEECCCS-----SCCHHHHHHHHHHHH--HTTCSEEEECCSSSSTTHHHHHHHHH---TTCEEEEESS
T ss_pred HHHHHHHHhCCEEEEECCC-----CCCHHHHHHHHHHHH--HcCCCEEEEeCCCHHHHHHHHHHHHH---CcCEEEEecC
Confidence 3445667789776543 11 12222 233333 2579999987643 32444555544 3788999876
Q ss_pred hhHHHHHHhhhccCCCCceec-cCCC-CCHHHHHHhcccCCC-CCCEEEEEcCCCCh-------hHHHHHHHhCCCeeEE
Q 023179 137 GTASIFEEVIQSSKCSLDVAF-SPSK-ATGKILASELPKNGK-KKCTVLYPASAKAS-------NEIEEGLSNRGFEVVR 206 (286)
Q Consensus 137 ~Ta~~L~~~~~~~~~G~~~~~-~~~~-~~~e~L~~~L~~~~~-~~~rvL~~~g~~~~-------~~L~~~L~~~G~~V~~ 206 (286)
.... . +....+ .... ..+..+++.|.+... ..+++.++.|.... .-+.+.|++.+..+..
T Consensus 94 ~~~~----~------~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~~~~~ 163 (316)
T 1tjy_A 94 DTKP----E------CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHPGWEI 163 (316)
T ss_dssp CCCG----G------GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred CCCC----C------CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHHHHHHHhhCCCcEE
Confidence 4311 1 111112 1211 123444555554211 34689999886542 2355677655333332
Q ss_pred EEeeeeecCCCCcH---H----HHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHH--HHHHHHHcC
Q 023179 207 LNTYTTEPVHHVDQ---T----VLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET--TASAAKRLG 272 (286)
Q Consensus 207 ~~vY~~~~~~~~~~---~----~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~--Ta~~l~~~G 272 (286)
+..+.. .+..+ + +++.-..+++|+..+-..+...++.+.+.+..++.++.++.. ..+.+.. |
T Consensus 164 ~~~~~~---~~~~~~~~~~~~~ll~~~~~~~aI~~~nD~~A~g~~~al~~~G~~dv~VvG~D~~~~~~~~i~~-g 234 (316)
T 1tjy_A 164 VTTQFG---YNDATKSLQTAEGIIKAYPDLDAIIAPDANALPAAAQAAENLKRNNLAIVGFSTPNVMRPYVQR-G 234 (316)
T ss_dssp EEEEEC---TTCHHHHHHHHHHHHHHCSSCCEEEECSTTHHHHHHHHHHHTTCCSCEEEEBCCHHHHHHHHHH-T
T ss_pred EEeccC---CCCHHHHHHHHHHHHHhCCCCCEEEECCCccHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHHC-C
Confidence 333221 22221 1 222224689999988776666666665543124777777653 3444444 5
No 107
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=80.66 E-value=27 Score=30.26 Aligned_cols=146 Identities=11% Similarity=-0.035 Sum_probs=81.2
Q ss_pred CCccEEEE-eCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCC
Q 023179 101 TIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (286)
Q Consensus 101 ~~~d~IvF-TS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~ 178 (286)
+..|.||- .++.........+.+. +++++..+..... +.... ..-..+.+.. ..+..+++.+.+.. ..
T Consensus 80 ~~v~~iiG~~~s~~~~~~~~~~~~~---~iP~i~~~~~~~~-~~~~~-----~~~f~~~~~~~~~~~~~~~~l~~~~-g~ 149 (366)
T 3td9_A 80 EKVLAIIGEVASAHSLAIAPIAEEN---KVPMVTPASTNPL-VTQGR-----KFVSRVCFIDPFQGAAMAVFAYKNL-GA 149 (366)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHT---TCCEEESSCCCGG-GTTTC-----SSEEESSCCHHHHHHHHHHHHHHTS-CC
T ss_pred CCeEEEEccCCchhHHHHHHHHHhC---CCeEEecCCCCcc-ccCCC-----CCEEEEeCCcHHHHHHHHHHHHHhc-CC
Confidence 45899984 4555555556655553 5667766543322 21110 1111122221 12345566664432 34
Q ss_pred CEEEEEcC-CC-----ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEE-eChHHHHHHHHHhcc
Q 023179 179 CTVLYPAS-AK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISD 249 (286)
Q Consensus 179 ~rvL~~~g-~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~Ivf-tS~sav~~~~~~~~~ 249 (286)
+++.++.+ +. ..+.+.+.|++.|++|.... |... .......+..+ ..+|+|++ .+...+..++..+.+
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~ 226 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSG--DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQ 226 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTT--CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCC--CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHH
Confidence 78888743 21 12457788999999887665 6542 22222333332 57999998 788888888888776
Q ss_pred ccCCCceEEEe
Q 023179 250 TEQWSNSVACI 260 (286)
Q Consensus 250 ~~~~~~~iv~I 260 (286)
.+. ..+++..
T Consensus 227 ~g~-~~~~~~~ 236 (366)
T 3td9_A 227 LGF-TGYILAG 236 (366)
T ss_dssp TTC-CSEEEEC
T ss_pred cCC-CceEEee
Confidence 532 4566544
No 108
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=79.83 E-value=3.2 Score=38.29 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=57.6
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChH-------HHHHHHHHhccccCCCceEEEeC-
Q 023179 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSWVNLISDTEQWSNSVACIG- 261 (286)
Q Consensus 190 ~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~s-------av~~~~~~~~~~~~~~~~iv~IG- 261 (286)
.+.+.++|.+.|+++..+.+|..... ...+++.++.+.+.|+|.||. .+..|+..+......+.++.++|
T Consensus 283 A~~ia~gl~~~Gv~~~~~~~~d~~~~--~~s~i~~~i~~~~~ivlGspT~~~~~~p~~~~~l~~l~~~~~~~K~~~~FGS 360 (410)
T 4dik_A 283 MKKAIDSLKEKGFTPVVYKFSDEERP--AISEILKDIPDSEALIFGVSTYEAEIHPLMRFTLLEIIDKANYEKPVLVFGV 360 (410)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSCCC--CHHHHHHHSTTCSEEEEEECCTTSSSCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_pred HHHHHHHHHhcCCceEEEEeccCCCC--CHHHHHHHHHhCCeEEEEeCCcCCcCCHHHHHHHHHHHhcccCCCEEEEEEC
Confidence 34678889999998876666654322 234466667899999999985 56666665544333356666666
Q ss_pred --------HHHHHHHHHcCCCeE
Q 023179 262 --------ETTASAAKRLGLKNV 276 (286)
Q Consensus 262 --------~~Ta~~l~~~G~~~v 276 (286)
+...+.+++.|++.+
T Consensus 361 yGWsg~a~~~~~~~l~~~~~~~v 383 (410)
T 4dik_A 361 HGWAPSAERTAGELLKETKFRIL 383 (410)
T ss_dssp CCCCCTTSCCHHHHHTTSSCEEE
T ss_pred CCCCcHHHHHHHHHHHHCCCEEE
Confidence 356777888887653
No 109
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=79.32 E-value=17 Score=28.57 Aligned_cols=55 Identities=7% Similarity=0.030 Sum_probs=33.5
Q ss_pred cCCCCEEEEeChHH--HHHHHHHhcccc-CCCceEEEeCHHHHHHHHHcCCCeEEeCC
Q 023179 226 ALSIPVVAVASPSA--VRSWVNLISDTE-QWSNSVACIGETTASAAKRLGLKNVYYPT 280 (286)
Q Consensus 226 ~~~~d~IvftS~sa--v~~~~~~~~~~~-~~~~~iv~IG~~Ta~~l~~~G~~~v~~~~ 280 (286)
+...|+|+.+.+.. .......++..+ ...+-+.+.++...+.+++.|...++.|.
T Consensus 103 ~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~G~~~vi~p~ 160 (183)
T 3c85_A 103 TGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIAEYPDQLEGLLESGVDAAFNIY 160 (183)
T ss_dssp CCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHTCSEEEEHH
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHcCCCEEEchH
Confidence 35789999977643 223333343322 11223345678888999999998876653
No 110
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=78.74 E-value=15 Score=30.22 Aligned_cols=169 Identities=9% Similarity=0.033 Sum_probs=91.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchH---HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDR---LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTAS 140 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~---l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~ 140 (286)
.+.+.++++|+++..++. ..+.+. +.+.+ ....+|.||+.+..... ...+.+ .+.++++++...
T Consensus 23 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l-~~~~vdgiI~~~~~~~~--~~~l~~---~~~pvV~~~~~~-- 89 (255)
T 1byk_A 23 TMLPAFYEQGYDPIMMES-----QFSPQLVAEHLGVL-KRRNIDGVVLFGFTGIT--EEMLAH---WQSSLVLLARDA-- 89 (255)
T ss_dssp HHHHHHHHHTCEEEEEEC-----TTCHHHHHHHHHHH-HTTTCCEEEEECCTTCC--TTTSGG---GSSSEEEESSCC--
T ss_pred HHHHHHHHcCCEEEEEeC-----CCcHHHHHHHHHHH-HhcCCCEEEEecCcccc--HHHHHh---cCCCEEEEcccc--
Confidence 445567788988765431 122222 22223 23679999998753211 111222 256788888642
Q ss_pred HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCC-C-------hhHHHHHHHhCCCeeEEEEeeee
Q 023179 141 IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAK-A-------SNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 141 ~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~-~-------~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
. ++..+..-....+..+++.|.+. ..+++.++.+.. . ..-+.+.|+++|..+.. ++
T Consensus 90 ----~------~~~~V~~d~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~~~--~~-- 153 (255)
T 1byk_A 90 ----K------GFASVCYDDEGAIKILMQRLYDQ--GHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVA--AL-- 153 (255)
T ss_dssp ----S------SCEEEEECHHHHHHHHHHHHHHT--TCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEE--EC--
T ss_pred ----C------CCCEEEEccHHHHHHHHHHHHHc--CCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCcce--ee--
Confidence 1 32221211112344556666664 347899998752 2 23466889999976532 11
Q ss_pred ecCCCCcHHH---HHHc--CCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHH
Q 023179 213 EPVHHVDQTV---LKQA--LSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 263 (286)
Q Consensus 213 ~~~~~~~~~~---~~~~--~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~ 263 (286)
.+...+.. .+++ ..+++|++.+-..+-.+++.+.+.+..++.++.++..
T Consensus 154 --~~~~~~~~~~~~~~~l~~~~~ai~~~~d~~A~g~~~al~~~g~~di~vig~d~~ 207 (255)
T 1byk_A 154 --PGLAMKQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNT 207 (255)
T ss_dssp --CCSCHHHHHHHSGGGCCTTCCEEEESSHHHHHHHHHHHHHTTCCSCEEEEECCC
T ss_pred --cCCccchHHHHHHHHhcCCCCEEEEeChHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 12222221 1222 3689999999887777777776554335677777543
No 111
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=78.45 E-value=8.9 Score=31.45 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=59.9
Q ss_pred CCeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-----HHHHHHH
Q 023179 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-----AGSVFLE 119 (286)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~-----av~~~~~ 119 (286)
+.+||+....++ ..-+...|+.+|++|+++.. -. + .+.+.+.+. ..++|.|.+++.. .++.+.+
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~--~v--p-~~~l~~~~~-~~~~d~v~lS~~~~~~~~~~~~~i~ 161 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV--DI--E-PGKFVEAVK-KYQPDIVGMSALLTTTMMNMKSTID 161 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS--SB--C-HHHHHHHHH-HHCCSEEEEECCSGGGTHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC--CC--C-HHHHHHHHH-HcCCCEEEEeccccccHHHHHHHHH
Confidence 457777765543 35777888999999998874 11 1 245555552 3478999888743 3566677
Q ss_pred HHHHcCC-CCcEEEEEChhhHHHHHHh
Q 023179 120 AWKEAGT-PNVRIGVVGAGTASIFEEV 145 (286)
Q Consensus 120 ~l~~~~~-~~~~i~aVG~~Ta~~L~~~ 145 (286)
.+++.+. +++++++-|....+.+.+.
T Consensus 162 ~l~~~~~~~~~~v~vGG~~~~~~~~~~ 188 (210)
T 1y80_A 162 ALIAAGLRDRVKVIVGGAPLSQDFADE 188 (210)
T ss_dssp HHHHTTCGGGCEEEEESTTCCHHHHHH
T ss_pred HHHhcCCCCCCeEEEECCCCCHHHHHH
Confidence 7777665 4799999998766555443
No 112
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=78.28 E-value=13 Score=31.67 Aligned_cols=89 Identities=12% Similarity=0.066 Sum_probs=59.3
Q ss_pred CCeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHHH
Q 023179 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLE 119 (286)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~-----~av~~~~~ 119 (286)
+.+||+..+.++ ..-+...|+.+|++|+++..- .| .+.+.+... ..++|.|.+++. ..+..+.+
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~--vp---~e~l~~~~~-~~~~d~V~lS~l~~~~~~~~~~~i~ 196 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRD--VP---AEEVLAAVQ-KEKPIMLTGTALMTTTMYAFKEVND 196 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEE--CC---SHHHHHHHH-HHCCSEEEEECCCTTTTTHHHHHHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC--CC---HHHHHHHHH-HcCCCEEEEEeeccCCHHHHHHHHH
Confidence 567888766543 356777889999999988763 22 244544442 346888888773 33555677
Q ss_pred HHHHcCCCCcEEEEEChhhHHHHHHh
Q 023179 120 AWKEAGTPNVRIGVVGAGTASIFEEV 145 (286)
Q Consensus 120 ~l~~~~~~~~~i~aVG~~Ta~~L~~~ 145 (286)
.+++.+.+ +++++-|....+.+.+.
T Consensus 197 ~l~~~~~~-~~v~vGG~~~~~~~~~~ 221 (258)
T 2i2x_B 197 MLLENGIK-IPFACGGGAVNQDFVSQ 221 (258)
T ss_dssp HHHTTTCC-CCEEEESTTCCHHHHHT
T ss_pred HHHhcCCC-CcEEEECccCCHHHHHH
Confidence 77766655 89999997765555443
No 113
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=78.24 E-value=19 Score=35.88 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=72.3
Q ss_pred CCeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHHH
Q 023179 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLE 119 (286)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~-----~av~~~~~ 119 (286)
..+|++....++ ..-....|+..|++|+..+.... .+++-+.. ...+.|.|.+.|- ..+..+.+
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~-----~eeiv~aA-~e~~adiVglSsl~~~~~~~~~~vi~ 677 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQT-----PREVAQQA-VDADVHAVGVSTLAAGHKTLVPELIK 677 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCC-----HHHHHHHH-HHTTCSEEEEEECSSCHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCC-----HHHHHHHH-HHcCCCEEEEeeecHHHHHHHHHHHH
Confidence 457777765543 24566788999999998665422 13333333 2357899998873 34566677
Q ss_pred HHHHcCCCCcEEEEEC--hh-hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 120 AWKEAGTPNVRIGVVG--AG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 120 ~l~~~~~~~~~i~aVG--~~-Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
.+++.+...+++++=| +. ..+.+++. |+...+.|. .+....++.+.+
T Consensus 678 ~Lr~~G~~dv~VivGG~~P~~d~~~l~~~------GaD~~f~pg-td~~e~~~~i~~ 727 (762)
T 2xij_A 678 ELNSLGRPDILVMCGGVIPPQDYEFLFEV------GVSNVFGPG-TRIPKAAVQVLD 727 (762)
T ss_dssp HHHHTTCTTSEEEEEESCCGGGHHHHHHH------TCCEEECTT-CCHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEeCCCCcccHHHHHhC------CCCEEeCCC-CCHHHHHHHHHH
Confidence 7888888777776655 34 36778888 998766554 366555555543
No 114
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=77.87 E-value=17 Score=26.31 Aligned_cols=113 Identities=15% Similarity=0.146 Sum_probs=66.8
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHH
Q 023179 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (286)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~l~~ 123 (286)
...+|||.-... ....+.+.|++.|+++... .+..+....+.....+|.|++-- .++.+ +++.+.+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~-~~~~l~~ 76 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGA--------DGAEEARLYLHYQKRIGLMITDLRMQPESGLD-LIRTIRA 76 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEE--------SSHHHHHHHHHHCTTEEEEEECSCCSSSCHHH-HHHHHHT
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEe--------CCHHHHHHHHHhCCCCcEEEEeccCCCCCHHH-HHHHHHh
Confidence 467899998765 3567888898889876532 12233334443434488877742 34555 5566665
Q ss_pred cCCCCcEEEEEC-hhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC
Q 023179 124 AGTPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (286)
Q Consensus 124 ~~~~~~~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~ 174 (286)
.....++++++. ....+...+.++. |.. ++..+..+.+.|...+.+.
T Consensus 77 ~~~~~~~ii~~s~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~l~~~i~~~ 124 (136)
T 3hdv_A 77 SERAALSIIVVSGDTDVEEAVDVMHL---GVV-DFLLKPVDLGKLLELVNKE 124 (136)
T ss_dssp STTTTCEEEEEESSCCHHHHHHHHHT---TCS-EEEESSCCHHHHHHHHHHH
T ss_pred cCCCCCCEEEEeCCCChHHHHHHHhC---Ccc-eEEeCCCCHHHHHHHHHHH
Confidence 434566666554 4444333333222 654 4566778889998888654
No 115
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=77.49 E-value=13 Score=30.23 Aligned_cols=114 Identities=11% Similarity=0.155 Sum_probs=64.4
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEece-------------EEeeeC--CCchHHHHHHhcCCCccEEEEeCHHHHH
Q 023179 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPL-------------IQHAQG--PDTDRLSSVLNADTIFDWIIITSPEAGS 115 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~-------------~~~~~~--~~~~~l~~~l~~~~~~d~IvFTS~~av~ 115 (286)
|+|+|+-...-+..+++.|.+.|.++.-+-. +..... .+.+.+.++ .+...|.+|.+.++...
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a--~i~~ad~vi~~~~~d~~ 78 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDA--EVSKNDVVVILTPRDEV 78 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHH--TCCTTCEEEECCSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhc--CcccCCEEEEecCCcHH
Confidence 3566665544456667777777766554321 001111 111222222 36789999998876654
Q ss_pred HH-HHHHHHcCCCCcEEE--EEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc
Q 023179 116 VF-LEAWKEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (286)
Q Consensus 116 ~~-~~~l~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~ 172 (286)
.. .....+......+++ +-++...+.|++. |....+.|....++.|...+.
T Consensus 79 n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~------G~d~vi~p~~~~~~~l~~~~~ 132 (218)
T 3l4b_C 79 NLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKM------GITTVLNLTTLITNTVEALIF 132 (218)
T ss_dssp HHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHH------TCEECCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHC------CCCEEECHHHHHHHHHHHHhc
Confidence 33 222222223344555 4578888999998 998767776666666766553
No 116
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=77.31 E-value=30 Score=31.98 Aligned_cols=140 Identities=13% Similarity=0.094 Sum_probs=83.2
Q ss_pred CeEEEeCCCCch--HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCC
Q 023179 51 PKVVVTRERGKN--GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPN 128 (286)
Q Consensus 51 ~~VLitR~~~~~--~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~ 128 (286)
++|-|.-.-... .++.+.|++.|+++..++.- ...++ +.++...+..+..++..- ...+.+.+.. +
T Consensus 197 ~~vnilG~~~~~~~~ei~~lL~~~Gi~v~~~~~~-----~~~~e----l~~~~~A~~ni~~~~~~~-~~A~~Le~~~--g 264 (460)
T 2xdq_A 197 PPLVLFGSLPDPVVTQLTLELKKQGIKVSGWLPA-----KRYTE----LPVIDEGYYVAGVNPFLS-RTATTLIRRR--K 264 (460)
T ss_dssp CCEEEESCCCHHHHHHHHHHHGGGTCCEEEEESC-----SSGGG----CCCCCTTCEEEESSTTCH-HHHHHHHHTT--C
T ss_pred CcEEEEEecCccHHHHHHHHHHHcCCeEEEEeCC-----CCHHH----HHccccCcEEEEcCHhHH-HHHHHHHHHc--C
Confidence 355555433333 36899999999999874222 12222 335566677777777664 4455554421 3
Q ss_pred cEEEE----EC-hhhHHHHHHhhhccCCCCceeccCCCCC--HHHHHHhcccCC--CCCCEEEEEcCCCChhHHHHHHHh
Q 023179 129 VRIGV----VG-AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSN 199 (286)
Q Consensus 129 ~~i~a----VG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~~--~e~L~~~L~~~~--~~~~rvL~~~g~~~~~~L~~~L~~ 199 (286)
++.+. +| ..|.+.|++..+.- |.. |+... -..+.+.+.... ..|+|+++..+..-.-.|...|.+
T Consensus 265 iP~~~~~~P~G~~~T~~~Lr~ia~~~--g~~----~e~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~~la~~L~e 338 (460)
T 2xdq_A 265 CQLITAPFPIGPDGTRTWIEQICATF--GIQ----PQGLAEREAETWQKLSDYLELVRGKSVFFMGDNLLEISLARFLIR 338 (460)
T ss_dssp CEEECCCCSBHHHHHHHHHHHHHHHT--TCC----CCSCHHHHHHHHHTTHHHHHHHTTCEEEECCCSSCHHHHHHHHHH
T ss_pred CCceecCcCccHHHHHHHHHHHHHHH--CcC----HHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCchHHHHHHHHHHH
Confidence 34433 55 78888888873222 433 22111 122333333221 278999999877777788999999
Q ss_pred CCCeeEEEE
Q 023179 200 RGFEVVRLN 208 (286)
Q Consensus 200 ~G~~V~~~~ 208 (286)
.|++|..+-
T Consensus 339 lGm~vv~~g 347 (460)
T 2xdq_A 339 CGMRVLEIG 347 (460)
T ss_dssp TTCEEEEEE
T ss_pred CCCEEEEeC
Confidence 999887744
No 117
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=76.92 E-value=19 Score=26.91 Aligned_cols=111 Identities=17% Similarity=0.146 Sum_probs=56.9
Q ss_pred eccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEEE
Q 023179 156 AFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVA 233 (286)
Q Consensus 156 ~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~Iv 233 (286)
.++.-+.-+..+++.|.+. |.+|..+.-+. .-.+.+.+.|..+ +. -+...++.++. ....|+|+
T Consensus 10 ~I~G~G~iG~~la~~L~~~---g~~V~~id~~~---~~~~~~~~~~~~~-----~~---gd~~~~~~l~~~~~~~~d~vi 75 (141)
T 3llv_A 10 IVIGSEAAGVGLVRELTAA---GKKVLAVDKSK---EKIELLEDEGFDA-----VI---ADPTDESFYRSLDLEGVSAVL 75 (141)
T ss_dssp EEECCSHHHHHHHHHHHHT---TCCEEEEESCH---HHHHHHHHTTCEE-----EE---CCTTCHHHHHHSCCTTCSEEE
T ss_pred EEECCCHHHHHHHHHHHHC---CCeEEEEECCH---HHHHHHHHCCCcE-----EE---CCCCCHHHHHhCCcccCCEEE
Confidence 3344444456666666553 34555554322 2234455555432 11 12222333443 35789999
Q ss_pred EeChHHHHHHH--HHhccccCCCceEEEeCHHHHHHHHHcCCCeEEeCC
Q 023179 234 VASPSAVRSWV--NLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPT 280 (286)
Q Consensus 234 ftS~sav~~~~--~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v~~~~ 280 (286)
++.++...+.. ...+..+...+-+.+-++.-.+.+++.|...++.|.
T Consensus 76 ~~~~~~~~n~~~~~~a~~~~~~~iia~~~~~~~~~~l~~~G~~~vi~p~ 124 (141)
T 3llv_A 76 ITGSDDEFNLKILKALRSVSDVYAIVRVSSPKKKEEFEEAGANLVVLVA 124 (141)
T ss_dssp ECCSCHHHHHHHHHHHHHHCCCCEEEEESCGGGHHHHHHTTCSEEEEHH
T ss_pred EecCCHHHHHHHHHHHHHhCCceEEEEEcChhHHHHHHHcCCCEEECHH
Confidence 88774433322 222222211233335577778899999998877664
No 118
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=76.78 E-value=48 Score=31.08 Aligned_cols=204 Identities=10% Similarity=0.062 Sum_probs=110.6
Q ss_pred CCeEEEe---CCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH-cC
Q 023179 50 NPKVVVT---RERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE-AG 125 (286)
Q Consensus 50 g~~VLit---R~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~-~~ 125 (286)
..+|-|. ....+..++.+.|++.|+++..+.. .....+++ .++.+.+.-+..++.......+.+++ .+
T Consensus 220 ~~~VNIiG~~~~~gD~~eik~lL~~~Gi~v~~~~~----g~~t~~ei----~~~~~A~~niv~~~~~~~~~A~~Le~~~G 291 (492)
T 3u7q_A 220 PYDVAIIGDYNIGGDAWSSRILLEEMGLRCVAQWS----GDGSISEI----ELTPKVKLNLVHCYRSMNYISRHMEEKYG 291 (492)
T ss_dssp TTEEEEEEECCBTTTTHHHHHHHHHTTCEEEEEEE----TTCCHHHH----HHGGGCSEEEESCHHHHHHHHHHHHHHHC
T ss_pred CCcEEEECCCCChhhHHHHHHHHHHCCCeEEEEeC----CCCCHHHH----HhhhcCcEEEEEChHHHHHHHHHHHHHhC
Confidence 3455444 2234568999999999999986531 11122333 34566677777777666666666654 34
Q ss_pred CCCcEEEEECh-hhHHHHHHhhhccCCCCceeccCCC---C---CHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHH
Q 023179 126 TPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSK---A---TGKILASELPKN--GKKKCTVLYPASAKASNEIEEG 196 (286)
Q Consensus 126 ~~~~~i~aVG~-~Ta~~L~~~~~~~~~G~~~~~~~~~---~---~~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~ 196 (286)
.+-+.+--+|. .|.+.|++..+.- |. -.++. . --..+...|... ...|+|+.+..+....-.+...
T Consensus 292 iP~i~~~p~G~~~T~~~L~~ia~~~--g~---~~~~~~e~~i~~e~~~~~~~l~~~~~~l~GKrv~i~g~~~~~~~la~~ 366 (492)
T 3u7q_A 292 IPWMEYNFFGPTKTIESLRAIAAKF--DE---SIQKKCEEVIAKYKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHVIGA 366 (492)
T ss_dssp CCEEECCCSSHHHHHHHHHHHHTTS--CH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECBSSSHHHHTHHH
T ss_pred CceEecCccCHHHHHHHHHHHHHHh--CC---cchHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHH
Confidence 33222112554 5777777773110 21 01110 0 001112222221 1268999988777666667889
Q ss_pred HHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEe--ChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCC
Q 023179 197 LSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA--SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLK 274 (286)
Q Consensus 197 L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~Ivft--S~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~ 274 (286)
|.+.|++|..+-++... ....+.+.+ ....+.+++. +...++.++...+ ..++.-|....-.+++.|+-
T Consensus 367 L~ElGm~vv~~gt~~~~--~~d~~~l~~-~~~~~~~i~~~~d~~el~~~i~~~~------pDL~ig~~~~~~ia~k~gIP 437 (492)
T 3u7q_A 367 YEDLGMEVVGTGYEFAH--NDDYDRTMK-EMGDSTLLYDDVTGYEFEEFVKRIK------PDLIGSGIKEKFIFQKMGIP 437 (492)
T ss_dssp HHTTTCEEEEEEESSCC--HHHHHHHHT-TSCTTCEEEESCBHHHHHHHHHHHC------CSEEEECHHHHHHHHHTTCC
T ss_pred HHHCCCEEEEEeCCCCC--HHHHHHHHH-hCCCCcEEEcCCCHHHHHHHHHhcC------CcEEEeCcchhHHHHHcCCC
Confidence 99999998765544321 111112221 2234556665 4666666555443 34666677777777788765
Q ss_pred e
Q 023179 275 N 275 (286)
Q Consensus 275 ~ 275 (286)
-
T Consensus 438 ~ 438 (492)
T 3u7q_A 438 F 438 (492)
T ss_dssp E
T ss_pred E
Confidence 3
No 119
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=76.40 E-value=2.9 Score=37.00 Aligned_cols=165 Identities=16% Similarity=0.135 Sum_probs=88.8
Q ss_pred CeEEEeCCCCchHH----HHHHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeCHHH--H--HHHHH
Q 023179 51 PKVVVTRERGKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPEA--G--SVFLE 119 (286)
Q Consensus 51 ~~VLitR~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~---l~~~~~~d~IvFTS~~a--v--~~~~~ 119 (286)
.-|++.-..+.... -.+.+++.|++...+.+-+.. ..++|.+. ++.....|.|+..-|-- + +..++
T Consensus 40 Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~ 116 (300)
T 4a26_A 40 LASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDI---SQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIE 116 (300)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTC---CHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHh
Confidence 34555544433332 345566789988765442221 12344444 44456899999998822 1 22222
Q ss_pred HHHH-cCCCCcEEEEEChhhHHHHHHhhhccCCCC-ceeccCCCCCHHHHHHhcccCC--CCCCEEEEEc-CCCChhHHH
Q 023179 120 AWKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSL-DVAFSPSKATGKILASELPKNG--KKKCTVLYPA-SAKASNEIE 194 (286)
Q Consensus 120 ~l~~-~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~-~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~~-g~~~~~~L~ 194 (286)
.+.. ...|+.. +.-.-.|-. |- ...+.| .|+.+.++.|.... ..|++++++. |......+.
T Consensus 117 ~I~p~KDVDG~~-----~~N~G~l~~-------g~~~~~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A 182 (300)
T 4a26_A 117 KIHPHKDADALL-----PVNVGLLHY-------KGREPPFTP--CTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVA 182 (300)
T ss_dssp TSCGGGCTTCCS-----HHHHHHHHC-------TTCCCSCCC--HHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHH
T ss_pred hCCcccccccCC-----cceEEEeec-------CCCcCCCCC--CCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHH
Confidence 2211 1122222 221112211 21 122343 46778877776543 3789999996 555667789
Q ss_pred HHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChH
Q 023179 195 EGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 195 ~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~s 238 (286)
..|...|++|..+..++. ..+ +.+.....|+|+-+-+.
T Consensus 183 ~lL~~~gAtVtv~~~~T~-----~l~-l~~~~~~ADIVI~Avg~ 220 (300)
T 4a26_A 183 ALLMKENATVTIVHSGTS-----TED-MIDYLRTADIVIAAMGQ 220 (300)
T ss_dssp HHHHHTTCEEEEECTTSC-----HHH-HHHHHHTCSEEEECSCC
T ss_pred HHHHHCCCeEEEEeCCCC-----Cch-hhhhhccCCEEEECCCC
Confidence 999999998866643221 111 00234588998887774
No 120
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=76.36 E-value=19 Score=27.49 Aligned_cols=53 Identities=9% Similarity=-0.013 Sum_probs=32.3
Q ss_pred cCCCCEEEEeChHHHHHHH-HH-hccccCCCceEE--EeCHHHHHHHHHcCCCeEEeC
Q 023179 226 ALSIPVVAVASPSAVRSWV-NL-ISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYP 279 (286)
Q Consensus 226 ~~~~d~IvftS~sav~~~~-~~-~~~~~~~~~~iv--~IG~~Ta~~l~~~G~~~v~~~ 279 (286)
+...|+|+.+.+.-..+.. .. .+... ...+++ +-++.-.+.+++.|...++.|
T Consensus 69 i~~ad~vi~~~~~d~~n~~~~~~a~~~~-~~~~ii~~~~~~~~~~~l~~~G~~~vi~p 125 (153)
T 1id1_A 69 IDRCRAILALSDNDADNAFVVLSAKDMS-SDVKTVLAVSDSKNLNKIKMVHPDIILSP 125 (153)
T ss_dssp TTTCSEEEECSSCHHHHHHHHHHHHHHT-SSSCEEEECSSGGGHHHHHTTCCSEEECH
T ss_pred hhhCCEEEEecCChHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHcCCCEEEcH
Confidence 5689999988765433332 22 22211 133444 447777888999999877655
No 121
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=76.00 E-value=2.5 Score=32.04 Aligned_cols=71 Identities=13% Similarity=0.155 Sum_probs=43.2
Q ss_pred EEEeCCCCch----HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---------HHHHHHH
Q 023179 53 VVVTRERGKN----GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---------AGSVFLE 119 (286)
Q Consensus 53 VLitR~~~~~----~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~---------av~~~~~ 119 (286)
|++....+.. +.+++.|++.|+++..+.+-+.. . ..+..+|.|||-||. .+..|++
T Consensus 3 I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~----~-------~~l~~~d~iiig~pty~~g~~p~~~~~~fl~ 71 (138)
T 5nul_A 3 IVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVN----I-------DELLNEDILILGCSAMTDEVLEESEFEPFIE 71 (138)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCC----H-------HHHTTCSEEEEEECCBTTTBCCTTTHHHHHH
T ss_pred EEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCC----H-------HHHhhCCEEEEEcCccCCCCCChHHHHHHHH
Confidence 3444444444 44555667778877654432221 1 134679999998873 4777888
Q ss_pred HHHHcCCCCcEEEEEC
Q 023179 120 AWKEAGTPNVRIGVVG 135 (286)
Q Consensus 120 ~l~~~~~~~~~i~aVG 135 (286)
.+... +.+.+++++|
T Consensus 72 ~l~~~-l~~k~~~~f~ 86 (138)
T 5nul_A 72 EISTK-ISGKKVALFG 86 (138)
T ss_dssp HHGGG-CTTCEEEEEE
T ss_pred HHHhh-cCCCEEEEEE
Confidence 77554 5677887776
No 122
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=75.78 E-value=25 Score=30.36 Aligned_cols=146 Identities=10% Similarity=0.003 Sum_probs=81.6
Q ss_pred CCCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCC-CceeccCC-CCCHHHHHHhcccCCC
Q 023179 100 DTIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCS-LDVAFSPS-KATGKILASELPKNGK 176 (286)
Q Consensus 100 ~~~~d~IvFT-S~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G-~~~~~~~~-~~~~e~L~~~L~~~~~ 176 (286)
....|.||.. +..........+.+. +++++..+.... .+... + .-..+.+. ...+..+++.|.+.
T Consensus 70 ~~~v~~iig~~~s~~~~~~~~~~~~~---~iP~v~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~-- 137 (358)
T 3hut_A 70 DPRVVGVLGDFSSTVSMAAGSIYGKE---GMPQLSPTAAHP-DYIKI------SPWQFRAITTPAFEGPNNAAWMIGD-- 137 (358)
T ss_dssp CTTEEEEEECSSHHHHHHHHHHHHHH---TCCEEESSCCCG-GGTTS------CTTEEESSCCGGGHHHHHHHHHHHT--
T ss_pred cCCcEEEEcCCCcHHHHHHHHHHHHC---CCcEEecCCCCc-ccccC------CCeEEEecCChHHHHHHHHHHHHHc--
Confidence 4678888875 344444455555543 566776654332 22222 2 11112222 22355566666665
Q ss_pred CCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeChH-HHHHHHHHhc
Q 023179 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-AVRSWVNLIS 248 (286)
Q Consensus 177 ~~~rvL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS~s-av~~~~~~~~ 248 (286)
..++|.++..+. ..+.+.+.|++.|+++.....|... .......++.+ ..+|+|++.+.. .+..++..+.
T Consensus 138 g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~ 215 (358)
T 3hut_A 138 GFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPG--NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALR 215 (358)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCC--CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHH
Confidence 347888885333 2345778899999988765555432 22223333332 478888888766 7777777776
Q ss_pred cccCCCceEEEe
Q 023179 249 DTEQWSNSVACI 260 (286)
Q Consensus 249 ~~~~~~~~iv~I 260 (286)
+.+. +.+++..
T Consensus 216 ~~g~-~~p~~~~ 226 (358)
T 3hut_A 216 ARGS-ALPVYGS 226 (358)
T ss_dssp HTTC-CCCEEEC
T ss_pred HcCC-CCcEEec
Confidence 6542 5666654
No 123
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=75.47 E-value=8.1 Score=36.56 Aligned_cols=192 Identities=14% Similarity=0.106 Sum_probs=104.1
Q ss_pred chHHHHHHHHhCCCcEEE-eceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHH-HcCCCCcEEEEEC-hh
Q 023179 61 KNGKLIKALAKHRIDCLE-LPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK-EAGTPNVRIGVVG-AG 137 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~-~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~-~~~~~~~~i~aVG-~~ 137 (286)
+..++.+.|++.|+++.. +|. ....+++ .++.+.+.-+..++..-....+.++ +.+.+-+...-+| ..
T Consensus 184 D~~eik~lL~~~Gi~v~~~~~g-----g~~~~ei----~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~PiG~~~ 254 (511)
T 2xdq_B 184 DCRELKQLMADLGIQVNLVIPA-----AATVHDL----QRLPQAWFNLVPYREIGGLTAQYLEREFGQPSVRITPMGVVE 254 (511)
T ss_dssp HHHHHHHHHHHHTCEEEEEEET-----TCCTTTG----GGGGGSSEEECCCTTSSHHHHHHHHHHHCCCEECCCCCSHHH
T ss_pred HHHHHHHHHHHCCCeEEEEECC-----cCcHHHH----HhhccCCEEEEEchhhhHHHHHHHHHHhCCCeEeecccCHHH
Confidence 357999999999999983 221 1122222 2344445555555543334445553 3444433345678 78
Q ss_pred hHHHHHHhhhccCCCCceeccCCCCCHHHHHHh--------------cccCCCCCCEEEEEcCCCChhHHHHHH-HhCCC
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSKATGKILASE--------------LPKNGKKKCTVLYPASAKASNEIEEGL-SNRGF 202 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~--------------L~~~~~~~~rvL~~~g~~~~~~L~~~L-~~~G~ 202 (286)
|.+.|++..+.- |.. -.+. ..+.+++. +-.....|+|+++..+..-.-.|...| .+.|+
T Consensus 255 T~~~L~~ia~~~--g~~--~~~~--~~e~~i~~~~~~~~~~~~~~~~~d~~~l~Gkrv~i~gd~~~~~~l~~~L~~elGm 328 (511)
T 2xdq_B 255 TARCIRAIQGVL--NAQ--GAGV--NYEAFIEQQTREVSQAAWFSRSIDCQNLTGKKAVVFGDNTHAAAMTKILSREMGI 328 (511)
T ss_dssp HHHHHHHHHHHH--HTT--TCCC--CCHHHHHHHHHHTCCHHHHHHSHHHHTTTTCEEEEEECHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh--CCC--cCCC--ChHHHHHHHHhhhhhHHHHHHHhHHHhccCCEEEEEcCChHHHHHHHHHHHhCCC
Confidence 888888873111 210 0000 11111111 111233778999887666666788899 79999
Q ss_pred eeEEEEeeeeecCCCCcHHHHHHcC-CCCEEEEe-ChHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCCCeEE
Q 023179 203 EVVRLNTYTTEPVHHVDQTVLKQAL-SIPVVAVA-SPSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGLKNVY 277 (286)
Q Consensus 203 ~V~~~~vY~~~~~~~~~~~~~~~~~-~~d~Ivft-S~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v~ 277 (286)
+|..+-+|.... .+...+.+. ..+-+++. ....++.++...+ ..++.-|..-...+++.|+.-+.
T Consensus 329 ~vv~~gt~~~~~----~~~~~~~l~~~~~~v~~~~D~~el~~~i~~~~------pDl~ig~~~~r~~a~k~gip~~~ 395 (511)
T 2xdq_B 329 HVVWAGTYCKYD----ADWFRAEVAGFCDEVLITDDHTVVGDAIARVE------PAAIFGTQMERHVGKRLNIPCGV 395 (511)
T ss_dssp EEEEEEESCGGG----HHHHHHHHTTTSSEEEECCCHHHHHHHHHHHC------CSEEEECHHHHHHHHHHTCCEEE
T ss_pred EEEEeecCCCCc----hHHHHHHHHhcCCcEEEeCCHHHHHHHHHhcC------CCEEEeccchHHHHHhcCCCeEe
Confidence 996655554331 111111121 22334444 6666665555443 34666666667777888876543
No 124
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=75.23 E-value=19 Score=31.24 Aligned_cols=165 Identities=10% Similarity=0.082 Sum_probs=81.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchH-HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDR-LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~-l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L 142 (286)
-+.+.++++|+++..+.. ....+..+ ++..+ ...+|.||+++..--..+.+...+ .++++++.++.....
T Consensus 28 Gi~~~~~~~g~~~~~~~~---~~~~~~~~~l~~l~--~~~~dgIi~~~~~~~~~~~~~a~~--~p~~p~v~id~~~~~-- 98 (318)
T 2fqx_A 28 GISRFAQENNAKCKYVTA---STDAEYVPSLSAFA--DENMGLVVACGSFLVEAVIETSAR--FPKQKFLVIDAVVQD-- 98 (318)
T ss_dssp HHHHHHHHTTCEEEEEEC---CSGGGHHHHHHHHH--HTTCSEEEEESTTTHHHHHHHHHH--CTTSCEEEESSCCCS--
T ss_pred HHHHHHHHhCCeEEEEeC---CCHHHHHHHHHHHH--HcCCCEEEECChhHHHHHHHHHHH--CCCCEEEEEcCccCC--
Confidence 445566788987655432 11112122 22222 257999999986543433333222 246888888753210
Q ss_pred HHhhhccCCCCceeccCCCCCHHHH----HHhcccCCCCC--CEEEEEcCCCC------hhHHHHHHHhCCCeeEEEEee
Q 023179 143 EEVIQSSKCSLDVAFSPSKATGKIL----ASELPKNGKKK--CTVLYPASAKA------SNEIEEGLSNRGFEVVRLNTY 210 (286)
Q Consensus 143 ~~~~~~~~~G~~~~~~~~~~~~e~L----~~~L~~~~~~~--~rvL~~~g~~~------~~~L~~~L~~~G~~V~~~~vY 210 (286)
.. .+.. +......+.-+ +..|.+ .| ++|.|+.|... ..-+.+.+++.|.++....+|
T Consensus 99 -~~------~~~~-v~~d~~~~~~lag~~a~~l~~---~Gh~r~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~~~~~~~~ 167 (318)
T 2fqx_A 99 -RD------NVVS-AVFGQNEGSFLVGVAAALKAK---EAGKSAVGFIVGMELGMMPLFEAGFEAGVKAVDPDIQVVVEV 167 (318)
T ss_dssp -CT------TEEE-EEECHHHHHHHHHHHHHHHHH---HTTCCEEEEEESCCSTTTHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred -CC------CEEE-EEechHHHHHHHHHHHHHHhc---cCCCcEEEEEeCcccHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 11 2221 12222222222 234443 33 59999987542 223557788888776655555
Q ss_pred eeecCC-CCcHHHHHH-c-CCCCEEEEeChHHHHHHHHHhc
Q 023179 211 TTEPVH-HVDQTVLKQ-A-LSIPVVAVASPSAVRSWVNLIS 248 (286)
Q Consensus 211 ~~~~~~-~~~~~~~~~-~-~~~d~IvftS~sav~~~~~~~~ 248 (286)
...... ....+..+. + ..+|+|+..+-..+--.++.+.
T Consensus 168 ~~~~~~~~~g~~~a~~ll~~~~daI~~~~d~~a~Gv~~a~~ 208 (318)
T 2fqx_A 168 ANTFSDPQKGQALAAKLYDSGVNVIFQVAGGTGNGVIKEAR 208 (318)
T ss_dssp CSCSSCHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHHHHH
T ss_pred ccCccCHHHHHHHHHHHHHCCCcEEEECCCCCchHHHHHHH
Confidence 432111 111112222 1 4689999887654444444433
No 125
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=74.74 E-value=5.6 Score=36.59 Aligned_cols=82 Identities=16% Similarity=0.109 Sum_probs=54.8
Q ss_pred CeEEEeCCC--C----chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-------HHHHH
Q 023179 51 PKVVVTRER--G----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSVF 117 (286)
Q Consensus 51 ~~VLitR~~--~----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~-------av~~~ 117 (286)
.+|+|.... + -++.+++.|.+.|+.++.+-+..... ..+.+.+..+.++|.|+|-||. .+..|
T Consensus 266 ~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~----~~~s~i~~~i~~~~~ivlGspT~~~~~~p~~~~~ 341 (410)
T 4dik_A 266 GKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEER----PAISEILKDIPDSEALIFGVSTYEAEIHPLMRFT 341 (410)
T ss_dssp TEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCC----CCHHHHHHHSTTCSEEEEEECCTTSSSCHHHHHH
T ss_pred cceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCC----CCHHHHHHHHHhCCeEEEEeCCcCCcCCHHHHHH
Confidence 456665332 2 24677778889999887555544332 1233445567889999999985 56677
Q ss_pred HHHHHHcCCCCcEEEEECh
Q 023179 118 LEAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 118 ~~~l~~~~~~~~~i~aVG~ 136 (286)
+..+......+.++++.|.
T Consensus 342 l~~l~~~~~~~K~~~~FGS 360 (410)
T 4dik_A 342 LLEIIDKANYEKPVLVFGV 360 (410)
T ss_dssp HHHHHHHCCCCCEEEEEEE
T ss_pred HHHHHhcccCCCEEEEEEC
Confidence 7777766667778888884
No 126
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=74.37 E-value=24 Score=26.24 Aligned_cols=114 Identities=13% Similarity=0.132 Sum_probs=65.6
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~ 120 (286)
..+.+.+|||.-... ....+...|+..|+++..+ .+..+....+ ....+|.|++-- .++.+ +++.
T Consensus 3 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l-~~~~~dlvi~d~~l~~~~g~~-~~~~ 72 (154)
T 2rjn_A 3 LNYKNYTVMLVDDEQPILNSLKRLIKRLGCNIITF--------TSPLDALEAL-KGTSVQLVISDMRMPEMGGEV-FLEQ 72 (154)
T ss_dssp -CCSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEE--------SCHHHHHHHH-TTSCCSEEEEESSCSSSCHHH-HHHH
T ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHH-hcCCCCEEEEecCCCCCCHHH-HHHH
Confidence 456688999998765 3467778888888765421 1234444555 335689888742 24554 4555
Q ss_pred HHHcCCCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 121 WKEAGTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 121 l~~~~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
+.+.. +.++++++ +........+.++.| |.. ++..+..+.+.|...|..
T Consensus 73 l~~~~-~~~~ii~ls~~~~~~~~~~~~~~g--~~~-~~l~kP~~~~~L~~~i~~ 122 (154)
T 2rjn_A 73 VAKSY-PDIERVVISGYADAQATIDAVNRG--KIS-RFLLKPWEDEDVFKVVEK 122 (154)
T ss_dssp HHHHC-TTSEEEEEECGGGHHHHHHHHHTT--CCS-EEEESSCCHHHHHHHHHH
T ss_pred HHHhC-CCCcEEEEecCCCHHHHHHHHhcc--chh-eeeeCCCCHHHHHHHHHH
Confidence 65543 35666555 444444444432221 243 455666788888777644
No 127
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=74.12 E-value=22 Score=25.55 Aligned_cols=112 Identities=7% Similarity=0.076 Sum_probs=67.1
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH----HHHHHHHHHHHH
Q 023179 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP----EAGSVFLEAWKE 123 (286)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~----~av~~~~~~l~~ 123 (286)
.+++|||.-... ....+.+.|++.|+.+... .+.++..+.+. ...+|.|++--. ++.+ +++.+.+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~-~~~~l~~ 74 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIA--------HNGFDAGIKLS-TFEPAIMTLDLSMPKLDGLD-VIRSLRQ 74 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHH-HTCCSEEEEESCBTTBCHHH-HHHHHHT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHHH-hcCCCEEEEecCCCCCCHHH-HHHHHHh
Confidence 367899997765 3567888888888765432 12233444453 356888877532 3444 5566665
Q ss_pred cCC-CCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC
Q 023179 124 AGT-PNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (286)
Q Consensus 124 ~~~-~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~ 174 (286)
... ...+++.++........+.++. |.. ++..+..+.+.|...|...
T Consensus 75 ~~~~~~~~ii~~~~~~~~~~~~~~~~---g~~-~~l~kP~~~~~l~~~i~~~ 122 (132)
T 3lte_A 75 NKVANQPKILVVSGLDKAKLQQAVTE---GAD-DYLEKPFDNDALLDRIHDL 122 (132)
T ss_dssp TTCSSCCEEEEECCSCSHHHHHHHHH---TCC-EEECSSCCHHHHHHHHHHH
T ss_pred cCccCCCeEEEEeCCChHHHHHHHHh---ChH-HHhhCCCCHHHHHHHHHHH
Confidence 443 4677777766544333333222 654 4666778899998888654
No 128
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=74.11 E-value=22 Score=25.72 Aligned_cols=110 Identities=16% Similarity=0.157 Sum_probs=63.7
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHH
Q 023179 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (286)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~l~~ 123 (286)
.+.+|||.-... ....+.+.|++.|..+..+. +.++....+.. ..+|.|++-- .++.+ +++.+.+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~--------~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~-~~~~l~~ 75 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAG--------DGEEGERLFGL-HAPDVIITDIRMPKLGGLE-MLDRIKA 75 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEES--------SHHHHHHHHHH-HCCSEEEECSSCSSSCHHH-HHHHHHH
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEEC--------CHHHHHHHHhc-cCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 357899988765 34677888887776554322 22334444422 4688877753 24554 5566665
Q ss_pred cCCCCcEEEEEChh-hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 124 AGTPNVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 124 ~~~~~~~i~aVG~~-Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
.. ...+++++... ..+...+.++. |.. ++..+..+.+.|...+..
T Consensus 76 ~~-~~~~ii~~s~~~~~~~~~~~~~~---g~~-~~l~kP~~~~~l~~~i~~ 121 (137)
T 3hdg_A 76 GG-AKPYVIVISAFSEMKYFIKAIEL---GVH-LFLPKPIEPGRLMETLED 121 (137)
T ss_dssp TT-CCCEEEECCCCCCHHHHHHHHHH---CCS-EECCSSCCHHHHHHHHHH
T ss_pred cC-CCCcEEEEecCcChHHHHHHHhC---Ccc-eeEcCCCCHHHHHHHHHH
Confidence 43 56777766543 22332222222 654 466777788888877754
No 129
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=74.05 E-value=5 Score=35.01 Aligned_cols=72 Identities=11% Similarity=-0.019 Sum_probs=48.7
Q ss_pred CCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeeeecCCC----C---cHHHHHHcCCCCEEEEeCh-----
Q 023179 178 KCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHH----V---DQTVLKQALSIPVVAVASP----- 237 (286)
Q Consensus 178 ~~rvL~~~g~~~--------~~~L~~~L~~~G~~V~~~~vY~~~~~~~----~---~~~~~~~~~~~d~IvftS~----- 237 (286)
..|||++.|... .+.+.+.+++.|++|+.+.+++...... . ..++.+.+...|+|||.||
T Consensus 58 ~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn~s 137 (279)
T 2fzv_A 58 PVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERHGQ 137 (279)
T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEETTE
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccccC
Confidence 358888877643 2345677788899988888776431111 1 1223444578999999994
Q ss_pred --HHHHHHHHHhcc
Q 023179 238 --SAVRSWVNLISD 249 (286)
Q Consensus 238 --sav~~~~~~~~~ 249 (286)
..+++|++.+..
T Consensus 138 ipg~LKn~IDrl~~ 151 (279)
T 2fzv_A 138 ITSVMKAQIDHLPL 151 (279)
T ss_dssp ECHHHHHHHHHSCS
T ss_pred cCHHHHHHHHHHhh
Confidence 789999999864
No 130
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=73.38 E-value=56 Score=30.26 Aligned_cols=202 Identities=12% Similarity=0.076 Sum_probs=108.9
Q ss_pred CCeEEEe-CC---CCchHHHHHHHHhCCCcEEEeceEE-------------eeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 023179 50 NPKVVVT-RE---RGKNGKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 50 g~~VLit-R~---~~~~~~l~~~L~~~G~~v~~~P~~~-------------~~~~~~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
..+|-|. -. ..+..++.+.|++.|+++..+|-+. ..+..+ ..+++ ++++.+.+.-+..++.
T Consensus 169 ~~~VNii~G~~~~~~D~~eik~lL~~~Gi~v~~~~d~s~~ld~~~~~~~~~~~~~gg-~~~~e-i~~~~~A~~ni~~~~~ 246 (458)
T 3pdi_B 169 PRQVNVLCSANLTPGDLEYIAESIESFGLRPLLIPDLSGSLDGHLDENRFNALTTGG-LSVAE-LATAGQSVATLVVGQS 246 (458)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHTTTCEEEEESCHHHHSSSCCCSSCCTTCCSCS-BCHHH-HGGGSSCSCEEEESGG
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHcCCEEEEecCccccccCccccccccccCCCC-CCHHH-HHhhhhCcEEEEecHH
Confidence 4556555 33 2345799999999999999886442 011111 12333 3355555666667887
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEC-----hhhHHHHHHhhhccCCCCceeccCCCCC--HHHHHHhcccC--CCCCCEEEE
Q 023179 113 AGSVFLEAWKEAGTPNVRIGVVG-----AGTASIFEEVIQSSKCSLDVAFSPSKAT--GKILASELPKN--GKKKCTVLY 183 (286)
Q Consensus 113 av~~~~~~l~~~~~~~~~i~aVG-----~~Ta~~L~~~~~~~~~G~~~~~~~~~~~--~e~L~~~L~~~--~~~~~rvL~ 183 (286)
.. ...+.+++. -+++++.++ ..|.+.|++..+.- |..+ ++... -..+.+.+... ...|+|+.+
T Consensus 247 ~~-~~A~~Le~~--~GiP~~~~~~p~G~~~T~~~l~~la~~~--g~~~---~~~i~~er~r~~~~~~d~~~~l~Gkrv~i 318 (458)
T 3pdi_B 247 LA-GAADALAER--TGVPDRRFGMLYGLDAVDAWLMALAEIS--GNPV---PDRYKRQRAQLQDAMLDTHFMLSSARTAI 318 (458)
T ss_dssp GH-HHHHHHHHH--SCCCEEEECCSCHHHHHHHHHHHHHHHH--SSCC---CHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HH-HHHHHHHHH--HCCCEEecCCCcCHHHHHHHHHHHHHHH--CCch---HHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 63 456666553 145555554 56777777753221 4321 11100 11133333321 126899999
Q ss_pred EcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHH
Q 023179 184 PASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGET 263 (286)
Q Consensus 184 ~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~ 263 (286)
..+..-.-.|...|.+.|++|..+-++.... ... . . ..+-|+......++.++... ...++.-|..
T Consensus 319 ~~~~~~~~~l~~~L~elGm~vv~~~~~~~~~--~~~-~----~-~~~~v~~~D~~~le~~i~~~------~pDllig~~~ 384 (458)
T 3pdi_B 319 AADPDLLLGFDALLRSMGAHTVAAVVPARAA--ALV-D----S-PLPSVRVGDLEDLEHAARAG------QAQLVIGNSH 384 (458)
T ss_dssp ECCHHHHHHHHHHHHTTTCEEEEEEESSCCS--CCT-T----T-TSSCEEESHHHHHHHHHHHH------TCSEEEECTT
T ss_pred ECCcHHHHHHHHHHHHCCCEEEEEEECCCCh--hhh-h----C-ccCcEEeCCHHHHHHHHHhc------CCCEEEEChh
Confidence 8776555568899999999998888776422 111 0 0 12334444333333333322 2345555555
Q ss_pred HHHHHHHcCCCe
Q 023179 264 TASAAKRLGLKN 275 (286)
Q Consensus 264 Ta~~l~~~G~~~ 275 (286)
-...++++|..-
T Consensus 385 ~~~~a~k~gip~ 396 (458)
T 3pdi_B 385 ALASARRLGVPL 396 (458)
T ss_dssp HHHHHHHTTCCE
T ss_pred HHHHHHHcCCCE
Confidence 556667777653
No 131
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=73.31 E-value=26 Score=26.18 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=65.9
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHH
Q 023179 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (286)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~l~~ 123 (286)
.+++|||.-... ....+.+.|++.|+.+..+ .+.++..+.+ ....+|.|++-- .++.+ +++.+.+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l-~~~~~dlii~D~~l~~~~g~~-~~~~lr~ 75 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHV--------RNGREAVRFL-SLTRPDLIISDVLMPEMDGYA-LCRWLKG 75 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEE--------SSHHHHHHHH-TTCCCSEEEEESCCSSSCHHH-HHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHH-HhCCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 467899998765 3567888888888765422 2334444555 345789888853 34555 4566665
Q ss_pred cC-CCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 124 AG-TPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 124 ~~-~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
.. ...++++++ +........+.++. |.. ++..+..+.+.|...+..
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~l~~~i~~ 123 (154)
T 3gt7_A 76 QPDLRTIPVILLTILSDPRDVVRSLEC---GAD-DFITKPCKDVVLASHVKR 123 (154)
T ss_dssp STTTTTSCEEEEECCCSHHHHHHHHHH---CCS-EEEESSCCHHHHHHHHHH
T ss_pred CCCcCCCCEEEEECCCChHHHHHHHHC---CCC-EEEeCCCCHHHHHHHHHH
Confidence 43 345666554 44444433333222 654 466667788888776653
No 132
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=73.27 E-value=5.7 Score=34.26 Aligned_cols=74 Identities=12% Similarity=0.110 Sum_probs=45.1
Q ss_pred CCeEEEeCCC---CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHH
Q 023179 50 NPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLE 119 (286)
Q Consensus 50 g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~-------~av~~~~~ 119 (286)
.++||+.-.. .....+.+.|++.|++|..++.-.... +.+ .+..||.||+... ..++.+.+
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~--~~~-------~L~~yDvIIl~d~~~~~l~~~~~~~L~~ 74 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLD--VGE-------LLAKQDLVILSDYPAERMTAQAIDQLVT 74 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBC--SSH-------HHHTCSEEEEESCCGGGBCHHHHHHHHH
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEeccccccc--Chh-------HHhcCCEEEEcCCccccCCHHHHHHHHH
Confidence 5788888543 356789999999999998876543321 111 3468999999742 33333333
Q ss_pred HHHHcCCCCcEEEEECh
Q 023179 120 AWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 120 ~l~~~~~~~~~i~aVG~ 136 (286)
... .+--++++|.
T Consensus 75 yV~----~GGgLi~~gG 87 (259)
T 3rht_A 75 MVK----AGCGLVMLGG 87 (259)
T ss_dssp HHH----TTCEEEEECS
T ss_pred HHH----hCCeEEEecC
Confidence 332 2455666654
No 133
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=73.12 E-value=5.5 Score=34.33 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=45.5
Q ss_pred CEEEEEcCC---CChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeC-------hHHHHHHHHHhc
Q 023179 179 CTVLYPASA---KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS-------PSAVRSWVNLIS 248 (286)
Q Consensus 179 ~rvL~~~g~---~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS-------~sav~~~~~~~~ 248 (286)
+|+|++.|. .+...|.+.|++.|++|+.+..-.. .... ..+.++|+||+.. +...+.+.+.+.
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~---~~~~----~~L~~yDvIIl~d~~~~~l~~~~~~~L~~yV~ 77 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVG---LDVG----ELLAKQDLVILSDYPAERMTAQAIDQLVTMVK 77 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSC---BCSS----HHHHTCSEEEEESCCGGGBCHHHHHHHHHHHH
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEeccccc---ccCh----hHHhcCCEEEEcCCccccCCHHHHHHHHHHHH
Confidence 689999764 5678899999999999876654221 1111 1256999999974 344555555554
Q ss_pred cccCCCceEEEeC
Q 023179 249 DTEQWSNSVACIG 261 (286)
Q Consensus 249 ~~~~~~~~iv~IG 261 (286)
+ +.-++++|
T Consensus 78 ~----GGgLi~~g 86 (259)
T 3rht_A 78 A----GCGLVMLG 86 (259)
T ss_dssp T----TCEEEEEC
T ss_pred h----CCeEEEec
Confidence 3 34455553
No 134
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=72.54 E-value=8.4 Score=32.80 Aligned_cols=72 Identities=14% Similarity=0.044 Sum_probs=48.3
Q ss_pred CCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeeeecCCCC------cHHHHHHcCCCCEEEEeCh------
Q 023179 178 KCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHV------DQTVLKQALSIPVVAVASP------ 237 (286)
Q Consensus 178 ~~rvL~~~g~~~--------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~------~~~~~~~~~~~d~IvftS~------ 237 (286)
..+||++.|... .+.+.+.+++.|++|+.+.+++....... ...+.+.+...|+|||.||
T Consensus 34 ~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn~si 113 (247)
T 2q62_A 34 RPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERHGAM 113 (247)
T ss_dssp CCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSSSSC
T ss_pred CCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCCCCc
Confidence 358888876642 23456677778999888887664211111 1233444578999999994
Q ss_pred -HHHHHHHHHhcc
Q 023179 238 -SAVRSWVNLISD 249 (286)
Q Consensus 238 -sav~~~~~~~~~ 249 (286)
..+++|++.+..
T Consensus 114 pa~LKn~iD~l~~ 126 (247)
T 2q62_A 114 TGIMKAQIDWIPL 126 (247)
T ss_dssp CHHHHHHHHTSCS
T ss_pred cHHHHHHHHHhhh
Confidence 789999999864
No 135
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=71.52 E-value=8.9 Score=32.08 Aligned_cols=57 Identities=14% Similarity=0.300 Sum_probs=37.9
Q ss_pred HHHHHHHhC-CCeeEEEEeeeeecC-----------------C--CCcHHHHHHcCCCCEEEEeCh-------HHHHHHH
Q 023179 192 EIEEGLSNR-GFEVVRLNTYTTEPV-----------------H--HVDQTVLKQALSIPVVAVASP-------SAVRSWV 244 (286)
Q Consensus 192 ~L~~~L~~~-G~~V~~~~vY~~~~~-----------------~--~~~~~~~~~~~~~d~IvftS~-------sav~~~~ 244 (286)
.+.+.|++. |.+|+.+.+++.... + +......+.+...|+|||.|| ..+++|+
T Consensus 23 ~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~y~~~~p~~lK~~i 102 (242)
T 1sqs_A 23 RLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPVYLQNVSVDTKNFI 102 (242)
T ss_dssp HHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEECSSSCCHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccccccCCCHHHHHHH
Confidence 345566665 888877777654211 1 223344445678999999995 7899999
Q ss_pred HHhc
Q 023179 245 NLIS 248 (286)
Q Consensus 245 ~~~~ 248 (286)
+.+.
T Consensus 103 Dr~~ 106 (242)
T 1sqs_A 103 ERIG 106 (242)
T ss_dssp HHTG
T ss_pred HHHH
Confidence 9874
No 136
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=71.34 E-value=24 Score=26.92 Aligned_cols=102 Identities=13% Similarity=0.010 Sum_probs=53.3
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeec-------------CCCCcHHHHHH--cCCCCEEEEeChHHH-
Q 023179 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEP-------------VHHVDQTVLKQ--ALSIPVVAVASPSAV- 240 (286)
Q Consensus 177 ~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~-------------~~~~~~~~~~~--~~~~d~IvftS~sav- 240 (286)
.+.+++++++..-...+...|.+.|.+|.-+..-.... .+......+.. +..+|+|+.+.+...
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~ 97 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDST 97 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHH
Confidence 34677777655545567777777776554332210000 00011122322 346888888876532
Q ss_pred -HHHHHHhccccCCCceEE--EeCHHHHHHHHHcCCCeEEeCC
Q 023179 241 -RSWVNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPT 280 (286)
Q Consensus 241 -~~~~~~~~~~~~~~~~iv--~IG~~Ta~~l~~~G~~~v~~~~ 280 (286)
.......+... ....++ +-++...+.++++|.. ++.|.
T Consensus 98 ~~~~~~~~~~~~-~~~~iv~~~~~~~~~~~l~~~G~~-vi~p~ 138 (155)
T 2g1u_A 98 NFFISMNARYMF-NVENVIARVYDPEKIKIFEENGIK-TICPA 138 (155)
T ss_dssp HHHHHHHHHHTS-CCSEEEEECSSGGGHHHHHTTTCE-EECHH
T ss_pred HHHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHCCCc-EEcHH
Confidence 22223333211 123333 4477788888899988 66654
No 137
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=70.96 E-value=28 Score=25.51 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=31.8
Q ss_pred cCCCCEEEEeChHH--HH-HHHHHhccccCCCceEE--EeCHHHHHHHHHcCCCeEEeCC
Q 023179 226 ALSIPVVAVASPSA--VR-SWVNLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPT 280 (286)
Q Consensus 226 ~~~~d~IvftS~sa--v~-~~~~~~~~~~~~~~~iv--~IG~~Ta~~l~~~G~~~v~~~~ 280 (286)
...+|+|+.+.+.. .. ......+..+. . +++ +-++...+.++++|...++.|.
T Consensus 68 ~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~-~-~ii~~~~~~~~~~~l~~~g~~~vi~p~ 125 (144)
T 2hmt_A 68 IRNFEYVIVAIGANIQASTLTTLLLKELDI-P-NIWVKAQNYYHHKVLEKIGADRIIHPE 125 (144)
T ss_dssp GGGCSEEEECCCSCHHHHHHHHHHHHHTTC-S-EEEEECCSHHHHHHHHHHTCSEEECHH
T ss_pred CCCCCEEEECCCCchHHHHHHHHHHHHcCC-C-eEEEEeCCHHHHHHHHHcCCCEEECcc
Confidence 35789999888742 22 22233333221 2 344 4467777888999998776653
No 138
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Probab=69.66 E-value=13 Score=32.80 Aligned_cols=165 Identities=13% Similarity=0.040 Sum_probs=88.2
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCCc
Q 023179 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPNV 129 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~~~~~~~ 129 (286)
++||++.+... ...+.|++.|+++...+.- ..+.+++.+. +.++|.++..+...+ +.+++.+ +++
T Consensus 1 ~~vl~~~~~~~--~~~~~l~~~g~~v~~~~~~----~~~~~~~~~~---~~~~d~~i~~~~~~~~~~~l~~~-----~~L 66 (311)
T 2cuk_A 1 MRVLVTRTLPG--KALDRLRERGLEVEVHRGL----FLPKAELLKR---VEGAVGLIPTVEDRIDAEVMDRA-----KGL 66 (311)
T ss_dssp CEEEESSCCSS--STTHHHHHTTCEEEECCSS----CCCHHHHHHH---HTTCSEEECCTTSCBCHHHHHHS-----TTC
T ss_pred CEEEEeCCCCH--HHHHHHHhcCCeEEEecCC----CCCHHHHHHH---hcCCeEEEEcCCCCCCHHHHhhC-----CCC
Confidence 46888765432 2346677788776543211 1122444443 467898886543211 1233322 345
Q ss_pred EEEE-EChhh----HHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc--------------------cC----------
Q 023179 130 RIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--------------------KN---------- 174 (286)
Q Consensus 130 ~i~a-VG~~T----a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~--------------------~~---------- 174 (286)
|+++ .|.+. .+++++. |+.+..+|. .+++.+++... .|
T Consensus 67 k~i~~~~~G~d~id~~~~~~~------gi~v~n~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~ 139 (311)
T 2cuk_A 67 KVIACYSVGVDHVDLEAARER------GIRVTHTPG-VLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLG 139 (311)
T ss_dssp CEEECSSSCCTTBCHHHHHTT------TCEEECCCS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCB
T ss_pred eEEEECCcCccccCHHHHHhC------CcEEEECCC-CChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccC
Confidence 5543 33322 3566777 988876654 34444433210 01
Q ss_pred -CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCC--CcHHHHHHcCCCCEEEEeChHH
Q 023179 175 -GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH--VDQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 175 -~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~--~~~~~~~~~~~~d~IvftS~sa 239 (286)
...|+++.+++...-...+...|+..|++|. +|.+..... ......+.+...|+|++.-|..
T Consensus 140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~ 204 (311)
T 2cuk_A 140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVV---YHARTPKPLPYPFLSLEELLKEADVVSLHTPLT 204 (311)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCSSSSCBCCHHHHHHHCSEEEECCCCC
T ss_pred cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEE---EECCCCcccccccCCHHHHHhhCCEEEEeCCCC
Confidence 1266789898766666678999999998654 455433221 1111111234789999886654
No 139
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=68.77 E-value=30 Score=24.97 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=63.0
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe-----CHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-----SPEAGSVFLE 119 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT-----S~~av~~~~~ 119 (286)
.+..+++|||.-... ....+...|++.|+++... . .+.++....+.. ..+|.|++- ..++.+ +++
T Consensus 5 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~----~---~~~~~a~~~~~~-~~~dlii~d~~~~~~~~g~~-~~~ 75 (140)
T 3cg0_A 5 ASDDLPGVLIVEDGRLAAATLRIQLESLGYDVLGV----F---DNGEEAVRCAPD-LRPDIALVDIMLCGALDGVE-TAA 75 (140)
T ss_dssp ---CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEE----E---SSHHHHHHHHHH-HCCSEEEEESSCCSSSCHHH-HHH
T ss_pred cCCCCceEEEEECCHHHHHHHHHHHHHCCCeeEEE----E---CCHHHHHHHHHh-CCCCEEEEecCCCCCCCHHH-HHH
Confidence 445578999987764 3467788888888765420 1 122333344422 458988875 245555 456
Q ss_pred HHHHcCCCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 120 AWKEAGTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 120 ~l~~~~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
.+... ..++++++ +........+.++. |.. ++..+..+.+.|...|..
T Consensus 76 ~l~~~--~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~kp~~~~~l~~~i~~ 124 (140)
T 3cg0_A 76 RLAAG--CNLPIIFITSSQDVETFQRAKRV---NPF-GYLAKPVAADTLHRSIEM 124 (140)
T ss_dssp HHHHH--SCCCEEEEECCCCHHHHHHHHTT---CCS-EEEEESCCHHHHHHHHHH
T ss_pred HHHhC--CCCCEEEEecCCCHHHHHHHHhc---CCC-EEEeCCCCHHHHHHHHHH
Confidence 56654 45666554 44444433333222 554 355566778888766643
No 140
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=68.63 E-value=77 Score=29.79 Aligned_cols=52 Identities=12% Similarity=0.021 Sum_probs=36.9
Q ss_pred CCCCCcccccccc-------ccccCCCCCCCeEEEeCC-CCchHHHHHHHHhCCCcEEEe
Q 023179 28 LPFQFSRIQASSD-------ATSASASNSNPKVVVTRE-RGKNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 28 ~~~~~~~~~~~~~-------~~~~~~~l~g~~VLitR~-~~~~~~l~~~L~~~G~~v~~~ 79 (286)
+|.++.|.+..-. --..++||.|.+|..+-. ..+...|.+.|.+.|++|...
T Consensus 46 g~~~i~~a~~~mp~l~~~~~~~~~~~pl~G~ri~~~lh~~~~ta~li~tL~~~GA~V~~~ 105 (494)
T 3d64_A 46 GRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIETLKALGADVRWA 105 (494)
T ss_dssp HHHHHHHHGGGCHHHHHHHHHTTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEeCCcHHHHHHHHHHHhCCCEEEEE
Confidence 4455666554221 223569999999999544 457889999999999999644
No 141
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=68.14 E-value=1.7 Score=35.77 Aligned_cols=50 Identities=10% Similarity=-0.033 Sum_probs=35.2
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 023179 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
+..+.+.+++.|.++..+-+++..+..+ .++....+.+...|.|||.||.
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~~-~dv~~~~~~l~~AD~iv~~~P~ 68 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQGK-IDVAAEQKLIETHDSLVWQFPI 68 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTCC-CCHHHHHHHHHTSSSEEEEEEC
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCCc-hhHHHHHHHHHhCCEEEEEcCh
Confidence 5567777888899898888887654321 2344445556789999999974
No 142
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=68.12 E-value=72 Score=29.05 Aligned_cols=168 Identities=12% Similarity=0.028 Sum_probs=93.3
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCC-cEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCC
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRI-DCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTP 127 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~-~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~~~~~ 127 (286)
.++|+++.+-. +...+.|++.|+ ++...+- ..+.+++. +.+.++|.+++.|..-+ +.+++.+ +
T Consensus 4 ~~kil~~~~~~--~~~~~~l~~~~~~~v~~~~~-----~~~~~~l~---~~~~~~d~l~~~~~~~~~~~~l~~~-----~ 68 (404)
T 1sc6_A 4 KIKFLLVEGVH--QKALESLRAAGYTNIEFHKG-----ALDDEQLK---ESIRDAHFIGLRSRTHLTEDVINAA-----E 68 (404)
T ss_dssp SCCEEECSCCC--HHHHHHHHHTTCCCEEECSS-----CCCHHHHH---HHTTSCSEEEECSSCCBCHHHHHHC-----S
T ss_pred ceEEEEeCCCC--HHHHHHHHhCCCcEEEEcCC-----CCCHHHHH---HHhcCCeEEEEcCCCCCCHHHHhhC-----C
Confidence 46899987643 444567888887 6665431 11223343 34678999988775433 2233322 3
Q ss_pred CcEEE-EEChhh----HHHHHHhhhccCCCCceeccCCCCCHHHHHHhc-------c-------------cC--------
Q 023179 128 NVRIG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL-------P-------------KN-------- 174 (286)
Q Consensus 128 ~~~i~-aVG~~T----a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L-------~-------------~~-------- 174 (286)
+++++ +.|-++ -+++.+. |+.+..+|. .+++.+++.- . +|
T Consensus 69 ~Lk~I~~~~~G~d~iD~~~a~~~------GI~V~n~p~-~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~ 141 (404)
T 1sc6_A 69 KLVAIGAFAIGTNQVDLDAAAKR------GIPVFNAPF-SNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSF 141 (404)
T ss_dssp SCCEEEECSSCCTTBCHHHHHHT------TCCEECCTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CC
T ss_pred CCcEEEECCcccCccCHHHHHhC------CCEEEecCc-ccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCcc
Confidence 44543 344444 3567777 998877664 3444432211 0 01
Q ss_pred CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCC-c-HHHHHHcCCCCEEEEeChHH
Q 023179 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-D-QTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 175 ~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~-~-~~~~~~~~~~d~IvftS~sa 239 (286)
...|+++.+++-..-...+...|+..|.+|..+..+........ . ..+.+.+...|+|++.-|..
T Consensus 142 el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t 208 (404)
T 1sc6_A 142 EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPEN 208 (404)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSS
T ss_pred ccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCC
Confidence 13678898887665666789999999987754433222111100 0 01111134678888887664
No 143
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=67.99 E-value=1.3 Score=37.75 Aligned_cols=174 Identities=13% Similarity=0.104 Sum_probs=88.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccEEEEeCHHHH--HHHHHHHHHcCCCCcEEEEEChh
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDWIIITSPEAG--SVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~~~~~d~IvFTS~~av--~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
.+.+.++++|+++..+.. ....+.+ .++..+ ...+|.||+.....- ...++.+ . .++++++++..
T Consensus 26 g~~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~vdgiii~~~~~~~~~~~~~~~---~-~~iPvV~~~~~ 96 (304)
T 3o1i_D 26 GMVSEAEKQGVNLRVLEA---GGYPNKSRQEQQLALCT--QWGANAIILGTVDPHAYEHNLKSW---V-GNTPVFATVNQ 96 (304)
T ss_dssp HHHHHHHHHTCEEEEEEC---SSTTCHHHHHHHHHHHH--HHTCSEEEECCSSTTSSTTTHHHH---T-TTSCEEECSSC
T ss_pred HHHHHHHHcCCeEEEEcC---CCCCCHHHHHHHHHHHH--HcCCCEEEEeCCChhHHHHHHHHH---c-CCCCEEEecCC
Confidence 445566678987765432 1111222 222223 257999999876543 3333333 3 57889998654
Q ss_pred hHHHHHHhhhccCCCCceeccCCC--CCHHHHHHhcccCCC---CCCEEEEEcCCCC-------hhHHHHHHHhCCCeeE
Q 023179 138 TASIFEEVIQSSKCSLDVAFSPSK--ATGKILASELPKNGK---KKCTVLYPASAKA-------SNEIEEGLSNRGFEVV 205 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~~~~~~~--~~~e~L~~~L~~~~~---~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~ 205 (286)
........ +....++..+ ..+..+++.|.+... ..+++.++.|... ..-+.+.|++.|+.+.
T Consensus 97 ~~~~~~~~------~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~ 170 (304)
T 3o1i_D 97 LDLDEEQS------TLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPVTTGFYEAIKNSDIHIV 170 (304)
T ss_dssp CCCCTTTG------GGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHHHHHHHHTTTTBTEEEE
T ss_pred CcccccCC------CceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHHHHHHHHHHhcCCCEEE
Confidence 31000001 1112222211 224445566655431 1458999987653 2345567777776654
Q ss_pred EEEeeeeecCCCCcH-------HHHHHcCCCCEEEEeChHHHHHHHHHhccccCC-CceEEE
Q 023179 206 RLNTYTTEPVHHVDQ-------TVLKQALSIPVVAVASPSAVRSWVNLISDTEQW-SNSVAC 259 (286)
Q Consensus 206 ~~~vY~~~~~~~~~~-------~~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~-~~~iv~ 259 (286)
. .+ ......+ +++ ....+++ ++.+-..+...++.+.+.+.. ++.++.
T Consensus 171 ~--~~---~~~~~~~~~~~~~~~~l-~~~~~~a-i~~~d~~a~g~~~al~~~g~~~di~vvg 225 (304)
T 3o1i_D 171 D--SF---WADNDKELQRNLVQRVI-DMGNIDY-IVGSAVAIEAAISELRSADKTHDIGLVS 225 (304)
T ss_dssp E--CC---CCCSCHHHHHHHHHHHH-HHSCCSE-EEECHHHHHHHHHHHTTTTCGGGSEEBC
T ss_pred E--ee---cCCCcHHHHHHHHHHHH-cCCCCCE-EEecCcchHHHHHHHHhcCCCCCeEEEE
Confidence 3 22 1122211 123 2357899 677877777777777765421 344443
No 144
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=67.97 E-value=33 Score=25.12 Aligned_cols=114 Identities=10% Similarity=0.127 Sum_probs=64.5
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCC-CcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEEEeC----HHHHHHHH
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWIIITS----PEAGSVFL 118 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G-~~v~~~P~~~~~~~~~~~~l~~~l~~~-~~~d~IvFTS----~~av~~~~ 118 (286)
....+.+|||.-... ....+...|++.| +++.... ...+.+.... .. ..+|.|++-- .++.+ ++
T Consensus 16 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~-------~~~~~~~~~~-~~~~~~dlvi~D~~l~~~~g~~-~~ 86 (146)
T 4dad_A 16 YFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTV-------GRAAQIVQRT-DGLDAFDILMIDGAALDTAELA-AI 86 (146)
T ss_dssp CCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEEC-------CCHHHHTTCH-HHHTTCSEEEEECTTCCHHHHH-HH
T ss_pred CcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeC-------CHHHHHHHHH-hcCCCCCEEEEeCCCCCccHHH-HH
Confidence 444578999997765 3567888888888 6654321 1111222212 22 5688888743 35555 45
Q ss_pred HHHHHcCCCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 119 EAWKEAGTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 119 ~~l~~~~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
+.+.+.. ..++++++ +........+.++. |.. ++..+..+.+.|...+..
T Consensus 87 ~~l~~~~-~~~~ii~lt~~~~~~~~~~~~~~---ga~-~~l~Kp~~~~~L~~~i~~ 137 (146)
T 4dad_A 87 EKLSRLH-PGLTCLLVTTDASSQTLLDAMRA---GVR-DVLRWPLEPRALDDALKR 137 (146)
T ss_dssp HHHHHHC-TTCEEEEEESCCCHHHHHHHHTT---TEE-EEEESSCCHHHHHHHHHH
T ss_pred HHHHHhC-CCCcEEEEeCCCCHHHHHHHHHh---CCc-eeEcCCCCHHHHHHHHHH
Confidence 5565544 45566554 44444444443222 543 466667788888777654
No 145
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=67.95 E-value=5.8 Score=34.77 Aligned_cols=160 Identities=17% Similarity=0.126 Sum_probs=88.6
Q ss_pred eEEEeCCCCchH----HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeCHHH--H--HHHHHH
Q 023179 52 KVVVTRERGKNG----KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPEA--G--SVFLEA 120 (286)
Q Consensus 52 ~VLitR~~~~~~----~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~---l~~~~~~d~IvFTS~~a--v--~~~~~~ 120 (286)
-|++.-..+... .-.+.+++.|++...+.+-+.. ..++|.+. ++.....|.|+..-|-- . +..++.
T Consensus 39 avilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~ 115 (286)
T 4a5o_A 39 AVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAET---SQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLER 115 (286)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTC---CHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhh
Confidence 345554443332 2345667889988765442221 22344444 44456899999998732 1 112222
Q ss_pred HHH-cCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEEc-CCCChhHHHHH
Q 023179 121 WKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPA-SAKASNEIEEG 196 (286)
Q Consensus 121 l~~-~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~~-g~~~~~~L~~~ 196 (286)
+.. ...|+. ++.-.-.|- . |- ..+.| .|+.+.++.|.... ..|++++++. |......+...
T Consensus 116 I~p~KDVDG~-----~~~N~g~l~-~------g~-~~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~l 180 (286)
T 4a5o_A 116 IHPDKDVDGF-----HPYNIGRLA-Q------RM-PLLRP--CTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALE 180 (286)
T ss_dssp SCGGGCTTCC-----SHHHHHHHH-T------TC-CSSCC--HHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHH
T ss_pred CCcccccccC-----ChhhhHHHh-c------CC-CCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHH
Confidence 211 111222 222211121 1 32 22333 57788877776653 3789999997 55567778999
Q ss_pred HHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeCh
Q 023179 197 LSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 197 L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~ 237 (286)
|...|++|..+.-++. ..+ +.....|+|+-+.+
T Consensus 181 L~~~gAtVtv~hs~T~-----~L~---~~~~~ADIVI~Avg 213 (286)
T 4a5o_A 181 LLLGGCTVTVTHRFTR-----DLA---DHVSRADLVVVAAG 213 (286)
T ss_dssp HHHTTCEEEEECTTCS-----CHH---HHHHTCSEEEECCC
T ss_pred HHHCCCeEEEEeCCCc-----CHH---HHhccCCEEEECCC
Confidence 9999999876643321 122 22358899888876
No 146
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=67.75 E-value=19 Score=30.26 Aligned_cols=73 Identities=12% Similarity=-0.038 Sum_probs=49.2
Q ss_pred CCCCCeEEEeCCC---CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE----eCHHHHHHHHH
Q 023179 47 SNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII----TSPEAGSVFLE 119 (286)
Q Consensus 47 ~l~g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvF----TS~~av~~~~~ 119 (286)
.|.||.+|||-.. +-...+++.|.++|++|...- +.. ...+++.+.++.....+...+ |++.+++.+++
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~--r~~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 78 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTY--RKE--RSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFE 78 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEE--SSG--GGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEE--CCH--HHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHH
Confidence 5789999999743 456889999999999987532 211 123455555655444444443 78999988887
Q ss_pred HHHH
Q 023179 120 AWKE 123 (286)
Q Consensus 120 ~l~~ 123 (286)
...+
T Consensus 79 ~~~~ 82 (256)
T 4fs3_A 79 QIGK 82 (256)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 147
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=67.47 E-value=14 Score=30.67 Aligned_cols=90 Identities=9% Similarity=0.081 Sum_probs=57.4
Q ss_pred CCeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE--eCHHH-----HHHH
Q 023179 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII--TSPEA-----GSVF 117 (286)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvF--TS~~a-----v~~~ 117 (286)
+.+|++..+.++ ..-....|+.+|++|+++..-- | .+.+.+... ..+.|.|.+ ++-.. ++.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~v--p---~e~iv~~~~-~~~~d~v~l~~S~l~~~~~~~~~~~ 165 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDV--L---NENVVEEAA-KHKGEKVLLVGSALMTTSMLGQKDL 165 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSC--C---HHHHHHHHH-HTTTSCEEEEEECSSHHHHTHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCC--C---HHHHHHHHH-HcCCCEEEEEchhcccCcHHHHHHH
Confidence 567777765543 3567778899999999876421 1 244544442 356788887 54333 4556
Q ss_pred HHHHHHcCC-CCcEEEEEChhhHHHHHHh
Q 023179 118 LEAWKEAGT-PNVRIGVVGAGTASIFEEV 145 (286)
Q Consensus 118 ~~~l~~~~~-~~~~i~aVG~~Ta~~L~~~ 145 (286)
.+.+++.+. +++++++=|....+.+.+.
T Consensus 166 i~~l~~~~~~~~v~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 166 MDRLNEEKLRDSVKCMFGGAPVSDKWIEE 194 (215)
T ss_dssp HHHHHHTTCGGGSEEEEESSSCCHHHHHH
T ss_pred HHHHHHcCCCCCCEEEEECCCCCHHHHHH
Confidence 677777765 4789999888555544443
No 148
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=67.44 E-value=35 Score=25.29 Aligned_cols=113 Identities=11% Similarity=0.128 Sum_probs=65.2
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEA 120 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~ 120 (286)
....+++|||.-... ....+...|++.|+.+..+ .+.++....+.. ..+|.|++-- .++.+ +++.
T Consensus 10 ~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~D~~l~~~~g~~-~~~~ 79 (153)
T 3hv2_A 10 TVTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFA--------RDATQALQLLAS-REVDLVISAAHLPQMDGPT-LLAR 79 (153)
T ss_dssp CCCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEE--------SSHHHHHHHHHH-SCCSEEEEESCCSSSCHHH-HHHH
T ss_pred hccCCceEEEECCCHHHHHHHHHHhcccCcEEEEE--------CCHHHHHHHHHc-CCCCEEEEeCCCCcCcHHH-HHHH
Confidence 344567999998765 3567778888888654421 233444444533 5689888753 34555 4555
Q ss_pred HHHcCCCCcEEEEECh-hhHHHHHHhhhccCCC-CceeccCCCCCHHHHHHhccc
Q 023179 121 WKEAGTPNVRIGVVGA-GTASIFEEVIQSSKCS-LDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 121 l~~~~~~~~~i~aVG~-~Ta~~L~~~~~~~~~G-~~~~~~~~~~~~e~L~~~L~~ 173 (286)
+.+.. ..++++++.. .......+.++. | .. ++..+..+.+.|...|..
T Consensus 80 l~~~~-~~~~ii~~s~~~~~~~~~~~~~~---g~~~-~~l~KP~~~~~l~~~i~~ 129 (153)
T 3hv2_A 80 IHQQY-PSTTRILLTGDPDLKLIAKAINE---GEIY-RYLSKPWDDQELLLALRQ 129 (153)
T ss_dssp HHHHC-TTSEEEEECCCCCHHHHHHHHHT---TCCS-EEECSSCCHHHHHHHHHH
T ss_pred HHhHC-CCCeEEEEECCCCHHHHHHHHhC---CCcc-eEEeCCCCHHHHHHHHHH
Confidence 65543 4566665544 333333333222 5 44 466677788888777643
No 149
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=67.26 E-value=20 Score=27.03 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=43.1
Q ss_pred HHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcC-CCCEEEEeCh----------HHHHHHHHHhccccCCCceEEEe
Q 023179 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQAL-SIPVVAVASP----------SAVRSWVNLISDTEQWSNSVACI 260 (286)
Q Consensus 192 ~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~-~~d~IvftS~----------sav~~~~~~~~~~~~~~~~iv~I 260 (286)
.+.+.|.+.|++|+.+.+.+... ..+. ..|.|+|-+| ..++.|++.+......+.+++++
T Consensus 21 ~ia~~l~~~g~~v~~~~~~~~~~---------~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~k~~~vf 91 (148)
T 3f6r_A 21 KLEELIAAGGHEVTLLNAADASA---------ENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAGRKVAAF 91 (148)
T ss_dssp HHHHHHHTTTCEEEEEETTTBCC---------TTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTTCEEEEE
T ss_pred HHHHHHHhCCCeEEEEehhhCCH---------hHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCCCEEEEE
Confidence 45566777787665544432211 1134 6787777664 36777887765432334444444
Q ss_pred --C-----------HHHHHHHHHcCCCeE
Q 023179 261 --G-----------ETTASAAKRLGLKNV 276 (286)
Q Consensus 261 --G-----------~~Ta~~l~~~G~~~v 276 (286)
| ....+.+++.|++.+
T Consensus 92 g~G~~~y~~~~~a~~~l~~~l~~~G~~~~ 120 (148)
T 3f6r_A 92 ASGDQEYEHFCGAVPAIEERAKELGATII 120 (148)
T ss_dssp EEECTTSSSTTTHHHHHHHHHHHTTCEEC
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHcCCEEe
Confidence 2 445667778887653
No 150
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=67.15 E-value=4.2 Score=33.01 Aligned_cols=58 Identities=9% Similarity=0.185 Sum_probs=36.0
Q ss_pred HHHHH-HHhCCCeeEEEEeeeeec--------CCCCcHHHHHHcCCCCEEEEeCh-------HHHHHHHHHhcc
Q 023179 192 EIEEG-LSNRGFEVVRLNTYTTEP--------VHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLISD 249 (286)
Q Consensus 192 ~L~~~-L~~~G~~V~~~~vY~~~~--------~~~~~~~~~~~~~~~d~IvftS~-------sav~~~~~~~~~ 249 (286)
.+.+. |++.|.+|+.+.+++... .++......+.+...|.|+|.|| ..+++|++.+..
T Consensus 24 ~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l~~ 97 (197)
T 2vzf_A 24 YALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKASYTGLLKAFLDILPQ 97 (197)
T ss_dssp HHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHTTSCT
T ss_pred HHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCCCCCHHHHHHHHhccc
Confidence 34455 666788777776654321 11111223334568999999985 588999998764
No 151
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=67.04 E-value=22 Score=29.24 Aligned_cols=112 Identities=12% Similarity=0.119 Sum_probs=60.9
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEece-----------EEeeeCC--CchHHHHHHhcCCCccEEEEeCHHHHHH
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQGP--DTDRLSSVLNADTIFDWIIITSPEAGSV 116 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~-----------~~~~~~~--~~~~l~~~l~~~~~~d~IvFTS~~av~~ 116 (286)
.++|+|.-...-+..+++.|.+.|. +.-+-. +...... +.+.+.+ . .+...|.+|++.++....
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~l~~-a-~i~~ad~vi~~~~~d~~n 85 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEK-A-NVRGARAVIVDLESDSET 85 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHHTTCEEEESCTTCHHHHHH-T-TCTTCSEEEECCSCHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHhcCCeEEEcCCCCHHHHHh-c-CcchhcEEEEcCCCcHHH
Confidence 4567777665556677777777775 443210 1111111 1122222 1 367899999988764332
Q ss_pred H--HHHHHHcCCCCcEEEEE--ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhc
Q 023179 117 F--LEAWKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (286)
Q Consensus 117 ~--~~~l~~~~~~~~~i~aV--G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L 171 (286)
. ...+++.+ .+.++++. .+...+.|++. |....+.|....+..|+..+
T Consensus 86 ~~~~~~a~~~~-~~~~iia~~~~~~~~~~l~~~------G~~~vi~p~~~~a~~l~~~~ 137 (234)
T 2aef_A 86 IHCILGIRKID-ESVRIIAEAERYENIEQLRMA------GADQVISPFVISGRLMSRSI 137 (234)
T ss_dssp HHHHHHHHHHC-SSSEEEEECSSGGGHHHHHHH------TCSEEECHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHC-CCCeEEEEECCHhHHHHHHHC------CCCEEECHHHHHHHHHHHHH
Confidence 2 23334433 34456554 56677888888 99876766544444444333
No 152
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=67.02 E-value=36 Score=29.19 Aligned_cols=160 Identities=8% Similarity=0.056 Sum_probs=83.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASI 141 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~ 141 (286)
.+.+.++++|+++..+.. ..+.+...+.++. ...+|.|| .+...-. +.+ ...++++++++.....
T Consensus 81 gi~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~~---~~l---~~~~iPvV~~~~~~~~- 147 (330)
T 3ctp_A 81 VIEEYAKNKGYTLFLCNT-----DDDKEKEKTYLEVLQSHRVAGII-ASRSQCE---DEY---ANIDIPVVAFENHILD- 147 (330)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TTCHHHHHHHHHHHHHTTCSEEE-EETCCCS---GGG---TTCCSCEEEESSCCCT-
T ss_pred HHHHHHHHCCCEEEEEeC-----CCChHHHHHHHHHHHhCCCCEEE-ECCCCCH---HHH---HhcCCCEEEEeccCCC-
Confidence 344556678988764321 1222222222211 25789999 5432111 112 1247889988864321
Q ss_pred HHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 142 FEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 142 L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
.. . .+..-....+..+++.|.+. ..+++.++.+... ..-+.+.|+++|..+. ..+|....
T Consensus 148 --~~------~--~V~~D~~~~~~~a~~~L~~~--G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~-~~~~~~~~ 214 (330)
T 3ctp_A 148 --NI------I--TISSDNYNGGRMAFDHLYEK--GCRKILHIKGPEVFEATELRYKGFLDGARAKDLEID-FIEFQHDF 214 (330)
T ss_dssp --TS------C--EEEECHHHHHHHHHHHHHHT--TCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCE-EEECSSSC
T ss_pred --CC------C--EEEeCHHHHHHHHHHHHHHC--CCCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCcc-eeEEcCCC
Confidence 11 1 11111112234455666654 3478999988753 2245678889998776 33432211
Q ss_pred CCC----CcHHHHHHcCCCCEEEEeChHHHHHHHHHhccc
Q 023179 215 VHH----VDQTVLKQALSIPVVAVASPSAVRSWVNLISDT 250 (286)
Q Consensus 215 ~~~----~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~~ 250 (286)
... ...++++. ..+++|++.+-..+-.++..+.+.
T Consensus 215 ~~~~~~~~~~~ll~~-~~~~ai~~~~d~~A~g~~~al~~~ 253 (330)
T 3ctp_A 215 QVKMLEEDINSMKDI-VNYDGIFVFNDIAAATVMRALKKR 253 (330)
T ss_dssp CGGGGGCCCTTGGGG-GGSSEEEESSHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhcC-CCCcEEEECCHHHHHHHHHHHHHc
Confidence 110 11122332 468999999887766666666554
No 153
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=66.90 E-value=3.7 Score=33.64 Aligned_cols=59 Identities=8% Similarity=0.104 Sum_probs=43.8
Q ss_pred hhHHHHHHHhCCCeeEEEEeeeeecCCC-CcHHHHHHcCCCCEEEEeC-------hHHHHHHHHHhc
Q 023179 190 SNEIEEGLSNRGFEVVRLNTYTTEPVHH-VDQTVLKQALSIPVVAVAS-------PSAVRSWVNLIS 248 (286)
Q Consensus 190 ~~~L~~~L~~~G~~V~~~~vY~~~~~~~-~~~~~~~~~~~~d~IvftS-------~sav~~~~~~~~ 248 (286)
...+.+.+++.|.+|+.+.+|+..+... +.....+.+...|.|||.+ |..++.|++.+-
T Consensus 19 ~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~~~~pa~lK~~iDrv~ 85 (192)
T 3f2v_A 19 HKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYWFNCPPLLKQWLDEVL 85 (192)
T ss_dssp HHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhhcCCCHHHHHHHHHHh
Confidence 4456778888899999999998765432 2233444567899999988 588999999864
No 154
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=66.87 E-value=70 Score=28.47 Aligned_cols=167 Identities=11% Similarity=0.076 Sum_probs=92.3
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCC
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTP 127 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~~~~~ 127 (286)
..++||++.+-. +...+.|++. +++...+. ....+.+++. +.+.++|.|+..+..-+ +.+++.+ .+
T Consensus 27 ~~~kvlv~~~~~--~~~~~~l~~~-~~v~~~~~---~~~~~~~~l~---~~~~~~d~li~~~~~~i~~~~l~~~----~~ 93 (345)
T 4g2n_A 27 PIQKAFLCRRFT--PAIEAELRQR-FDLEVNLE---DTVLTPSGIA---SRAHGAEVLFVTATEAITAEVIRKL----QP 93 (345)
T ss_dssp CCCEEEESSCCC--HHHHHHHHHH-SEEEECTT---CCCCCHHHHH---HHTTTCSEEEECTTSCBCHHHHHHT----TT
T ss_pred CCCEEEEeCCCC--HHHHHHHHcc-CCEEEecC---CCCCCHHHHH---HHhcCCeEEEEeCCCCCCHHHHHhh----cC
Confidence 467899998764 4456677665 45543221 1111223333 34578999987753222 2233322 12
Q ss_pred CcEEEE-EChhh----HHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc--------------------c---------
Q 023179 128 NVRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP--------------------K--------- 173 (286)
Q Consensus 128 ~~~i~a-VG~~T----a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~--------------------~--------- 173 (286)
++|+++ .|.+. .+++++. |+.+..+|. .+++.+++... .
T Consensus 94 ~Lk~I~~~~~G~D~id~~~a~~~------gI~V~n~pg-~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~ 166 (345)
T 4g2n_A 94 GLKTIATLSVGYDHIDMAAARSL------GIKVLHTPD-VLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQL 166 (345)
T ss_dssp TCCEEEESSSCCTTBCHHHHHHT------TCEEECCCS-CCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTT
T ss_pred CceEEEEcCCcccccCHHHHHhC------CEEEEECCc-ccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccc
Confidence 455543 33332 3667777 999877764 45554433210 0
Q ss_pred --CCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCC-----C-c-HHHHHHcCCCCEEEEeChH
Q 023179 174 --NGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH-----V-D-QTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 174 --~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~-----~-~-~~~~~~~~~~d~IvftS~s 238 (286)
....|+++.+++-..-...+...|+..|++|.. |.+.+... . . ..+.+.+...|+|++.-|.
T Consensus 167 ~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~---~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Pl 237 (345)
T 4g2n_A 167 LGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHY---HNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPG 237 (345)
T ss_dssp CBCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEE---ECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCC
T ss_pred cccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEE---ECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCC
Confidence 112577898987666666789999999987654 44332110 0 0 0111123578999988774
No 155
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=66.85 E-value=43 Score=25.98 Aligned_cols=112 Identities=16% Similarity=0.244 Sum_probs=64.4
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l 121 (286)
+..+++|||.-... ....+...|++.|+.+..+ .+..+..+.+ ....+|.|+.- ..+|.+ +++.+
T Consensus 4 ~m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~-~~~~~dlvl~D~~lp~~~g~~-~~~~l 73 (184)
T 3rqi_A 4 SMSDKNFLVIDDNEVFAGTLARGLERRGYAVRQA--------HNKDEALKLA-GAEKFEFITVXLHLGNDSGLS-LIAPL 73 (184)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------CSHHHHHHHH-TTSCCSEEEECSEETTEESHH-HHHHH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHH-hhCCCCEEEEeccCCCccHHH-HHHHH
Confidence 34578999998765 3567788888888754321 2333444455 33568887763 235665 44555
Q ss_pred HHcCCCCcEEEE-EChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 122 KEAGTPNVRIGV-VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 122 ~~~~~~~~~i~a-VG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
.+.. ..+++++ .|....+...+.++. |.. ++..+..+.+.|...+..
T Consensus 74 ~~~~-~~~~ii~lt~~~~~~~~~~a~~~---Ga~-~~l~KP~~~~~L~~~i~~ 121 (184)
T 3rqi_A 74 CDLQ-PDARILVLTGYASIATAVQAVKD---GAD-NYLAKPANVESILAALQT 121 (184)
T ss_dssp HHHC-TTCEEEEEESSCCHHHHHHHHHH---TCS-EEEESSCCHHHHHHHTST
T ss_pred HhcC-CCCCEEEEeCCCCHHHHHHHHHh---CHH-HheeCCCCHHHHHHHHHH
Confidence 5543 3556654 454444333333222 654 466677889999888754
No 156
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=66.56 E-value=25 Score=30.89 Aligned_cols=148 Identities=11% Similarity=0.015 Sum_probs=78.6
Q ss_pred CCccEEEEeCHH-HHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCC
Q 023179 101 TIFDWIIITSPE-AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKK 178 (286)
Q Consensus 101 ~~~d~IvFTS~~-av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~ 178 (286)
...|.||..... ........+.+ .+++++.++..+. .... .....+.+. ...+..+++.|.+.. .
T Consensus 74 ~~v~~iig~~~s~~~~~~~~~~~~---~~iP~v~~~~~~~--~~~~------~~~~~v~~~~~~~~~~~~~~l~~~g--~ 140 (385)
T 1pea_A 74 RGVRFLVGCYMSHTRKAVMPVVER---ADALLCYPTPYEG--FEYS------PNIVYGGPAPNQNSAPLAAYLIRHY--G 140 (385)
T ss_dssp TCCCEEEECCSHHHHHHHHHHHHH---TTCEEEECSCCCC--CCCC------TTEEECSCCGGGTHHHHHHHHHTTT--C
T ss_pred CCcEEEECCCchHHHHHHHHHHHh---cCceEEECCcccC--ccCC------CCEEEecCChHHhHHHHHHHHHHcc--C
Confidence 578999886443 33444554544 3677777765310 0001 111112222 233566777776553 4
Q ss_pred CEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeC-hHHHHHHHHHhccc
Q 023179 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLISDT 250 (286)
Q Consensus 179 ~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS-~sav~~~~~~~~~~ 250 (286)
+||.++.++.. ...+.+.|++.|+++.....|............++.+ ..+|+|++.+ ...+-.++..+.+.
T Consensus 141 ~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~ 220 (385)
T 1pea_A 141 ERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARR 220 (385)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHH
T ss_pred cEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHc
Confidence 79988876532 2456788899999876543332100111111222222 3789999987 55666777777654
Q ss_pred cCC--CceEEEeC
Q 023179 251 EQW--SNSVACIG 261 (286)
Q Consensus 251 ~~~--~~~iv~IG 261 (286)
+.. ..+++..+
T Consensus 221 G~~~~~~~~~~~~ 233 (385)
T 1pea_A 221 YGDGRRPPIASLT 233 (385)
T ss_dssp HCSSCCCCEEESS
T ss_pred CCCcCCceEEecc
Confidence 322 24555543
No 157
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=66.49 E-value=49 Score=28.40 Aligned_cols=155 Identities=8% Similarity=0.036 Sum_probs=0.0
Q ss_pred hHHHHHHhcCCCccEEE-EeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCC-CCCHHHHH
Q 023179 91 DRLSSVLNADTIFDWII-ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILA 168 (286)
Q Consensus 91 ~~l~~~l~~~~~~d~Iv-FTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~ 168 (286)
..+.+.++ ...|.|| ..+..........+.+. +++++..+......-.+.. .....+.+. ...+..++
T Consensus 60 ~~~~~l~~--~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 129 (356)
T 3ipc_A 60 SVANKFVA--DGVKFVVGHANSGVSIPASEVYAEN---GILEITPAATNPVFTERGL-----WNTFRTCGRDDQQGGIAG 129 (356)
T ss_dssp HHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHTT---TCEEEESSCCCGGGGSSCC-----TTEEESSCCHHHHHHHHH
T ss_pred HHHHHHHH--CCCcEEEcCCCcHHHHHHHHHHHhC---CCeEEecCCCCcHhhcCCC-----CcEEEecCChHHHHHHHH
Q ss_pred HhcccCCCCCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEE-EeChHHH
Q 023179 169 SELPKNGKKKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVA-VASPSAV 240 (286)
Q Consensus 169 ~~L~~~~~~~~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~Iv-ftS~sav 240 (286)
+.|.+.. ..+|+.++.++.. .+.+.+.|++.|+++.....|. .........++.+ ...|+|+ +.+...+
T Consensus 130 ~~l~~~~-g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a 206 (356)
T 3ipc_A 130 KYLADHF-KDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVN--VGDKDFSALISKMKEAGVSIIYWGGLHTEA 206 (356)
T ss_dssp HHHHHHC-TTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred HHHHHhc-CCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEEccCchHH
Q ss_pred HHHHHHhccccCCCceEEE
Q 023179 241 RSWVNLISDTEQWSNSVAC 259 (286)
Q Consensus 241 ~~~~~~~~~~~~~~~~iv~ 259 (286)
..++..+.+.+. ..+++.
T Consensus 207 ~~~~~~~~~~g~-~~~~~~ 224 (356)
T 3ipc_A 207 GLIIRQAADQGL-KAKLVS 224 (356)
T ss_dssp HHHHHHHHHHTC-CCEEEE
T ss_pred HHHHHHHHHCCC-CCcEEE
No 158
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=66.28 E-value=5.3 Score=30.49 Aligned_cols=63 Identities=11% Similarity=0.131 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEEEeCHH----------HHHHHHHHHHHcCCCCcEE
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWIIITSPE----------AGSVFLEAWKEAGTPNVRI 131 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~-~~d~IvFTS~~----------av~~~~~~l~~~~~~~~~i 131 (286)
..+++.|.+.|+++..+++-.... ..+. .+|.|||-+|. .+..|++.+....+.+.++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~~~-----------~~l~~~~d~ii~g~pty~~~~G~~p~~~~~fl~~l~~~~l~~k~~ 88 (148)
T 3f6r_A 20 QKLEELIAAGGHEVTLLNAADASA-----------ENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGLAGRKV 88 (148)
T ss_dssp HHHHHHHHTTTCEEEEEETTTBCC-----------TTTTTTCSEEEEEECEECSSSCEECHHHHHHHTTGGGTCCTTCEE
T ss_pred HHHHHHHHhCCCeEEEEehhhCCH-----------hHhcccCCEEEEEecccCCCCCCCcHHHHHHHHHhhccCCCCCEE
Confidence 344555566787765544332211 1345 89999888753 4555666554434566777
Q ss_pred EEECh
Q 023179 132 GVVGA 136 (286)
Q Consensus 132 ~aVG~ 136 (286)
+++|-
T Consensus 89 ~vfg~ 93 (148)
T 3f6r_A 89 AAFAS 93 (148)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 76654
No 159
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=66.22 E-value=8.1 Score=33.80 Aligned_cols=162 Identities=15% Similarity=0.136 Sum_probs=89.0
Q ss_pred CeEEEeCCCCchH----HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH--H--HHHHH
Q 023179 51 PKVVVTRERGKNG----KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--G--SVFLE 119 (286)
Q Consensus 51 ~~VLitR~~~~~~----~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~a--v--~~~~~ 119 (286)
.-|++....+... .-.+.+++.|++...+.+-+.. ..++|.+.+ +.....|.|+..-|-- + +..++
T Consensus 37 Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~ 113 (285)
T 3l07_A 37 LVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHT---TESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIY 113 (285)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTC---CHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHh
Confidence 3455554444333 2345666789988765442211 223444444 4456899999998832 1 22233
Q ss_pred HHHH-cCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEEc-CCCChhHHHH
Q 023179 120 AWKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPA-SAKASNEIEE 195 (286)
Q Consensus 120 ~l~~-~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~~-g~~~~~~L~~ 195 (286)
.+.. ...|+.. +.-.-.|-. |-...+.| .|+.+.++.|.... ..|++++++. |......+..
T Consensus 114 ~I~p~KDVDG~~-----~~N~G~l~~-------g~~~~~~P--cTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~ 179 (285)
T 3l07_A 114 SIKPEKDVDGFH-----PTNVGRLQL-------RDKKCLES--CTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQ 179 (285)
T ss_dssp HSCGGGBTTCCS-----HHHHHHHHH-------TCTTCCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHH
T ss_pred hCCcccccccCC-----hhheeehhc-------CCCCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHH
Confidence 2211 1122222 222112211 32122343 47778877776653 3789999996 5556777899
Q ss_pred HHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeCh
Q 023179 196 GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~ 237 (286)
.|...|++|..+.-++ . .+.+.....|+|+-+.+
T Consensus 180 lL~~~gAtVtv~hs~t-----~---~L~~~~~~ADIVI~Avg 213 (285)
T 3l07_A 180 LLLNAKATVTTCHRFT-----T---DLKSHTTKADILIVAVG 213 (285)
T ss_dssp HHHHTTCEEEEECTTC-----S---SHHHHHTTCSEEEECCC
T ss_pred HHHHCCCeEEEEeCCc-----h---hHHHhcccCCEEEECCC
Confidence 9999999886553221 1 12233478999988876
No 160
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=65.90 E-value=62 Score=27.50 Aligned_cols=148 Identities=9% Similarity=0.049 Sum_probs=79.5
Q ss_pred CCccEEEEeC-HHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCC
Q 023179 101 TIFDWIIITS-PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (286)
Q Consensus 101 ~~~d~IvFTS-~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~ 178 (286)
...|.||... ..........+.+. +++++..+.... .+... +. ..-..+.+.. ..+..+++.|.+.. ..
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~~~-~~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~~~~-g~ 138 (346)
T 1usg_A 68 DGIKYVIGHLCSSSTQPASDIYEDE---GILMISPGATNP-ELTQR---GY-QHIMRTAGLDSSQGPTAAKYILETV-KP 138 (346)
T ss_dssp TTCCEEECCSSHHHHHHHHHHHHHH---TCEEEECCCCCG-GGGSS---CC-SSEEECSCCGGGHHHHHHHHHHHTT-CC
T ss_pred CCCCEEEcCCCcHHHHHHHHHHHHC---CCeEEeeCCCCh-HHhcC---CC-CcEEeccCChHHHHHHHHHHHHHhc-CC
Confidence 5788888753 33334444545443 577777765432 12221 00 1111122322 23455666665432 34
Q ss_pred CEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeC-hHHHHHHHHHhccc
Q 023179 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLISDT 250 (286)
Q Consensus 179 ~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS-~sav~~~~~~~~~~ 250 (286)
+++.++.++.. .+.+.+.|++.|+++.....|... .......++.+ ..+|+|++.+ ...+..++..+.+.
T Consensus 139 ~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~ 216 (346)
T 1usg_A 139 QRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAG--EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSV 216 (346)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccCCC--CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHc
Confidence 78888876542 235678889999988654444321 12222333332 5789999988 56666777777654
Q ss_pred cCCCceEEEe
Q 023179 251 EQWSNSVACI 260 (286)
Q Consensus 251 ~~~~~~iv~I 260 (286)
+. ..+++..
T Consensus 217 g~-~~~~~~~ 225 (346)
T 1usg_A 217 GL-KTQFMGP 225 (346)
T ss_dssp TC-CCEEEEC
T ss_pred CC-CCeEEec
Confidence 32 4555543
No 161
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=65.86 E-value=68 Score=27.98 Aligned_cols=148 Identities=8% Similarity=0.024 Sum_probs=82.5
Q ss_pred CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCCC
Q 023179 101 TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKKC 179 (286)
Q Consensus 101 ~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~~ 179 (286)
...|.||-.+..........+.+. +++++..+. +....... .. .....+.+. ...+..+++.|.+.. ..+
T Consensus 74 ~~V~~iig~~s~~~~~~~~~~~~~---~iP~i~~~~-~~~~~~~~---~~-~~~f~~~~~~~~~~~~~~~~l~~~~-g~~ 144 (392)
T 3lkb_A 74 FKIPVFLSYATGANLQLKPLIQEL---RIPTIPASM-HIELIDPP---NN-DYIFLPTTSYSEQVVALLEYIAREK-KGA 144 (392)
T ss_dssp TCCSCEEECCHHHHHHHHHHHHHH---TCCEEESCC-CGGGGSSS---SC-TTBCEEECCHHHHHHHHHHHHHHHC-TTC
T ss_pred cCcEEEEeCCcHHHHHHHHHHHhC---CceEEeccc-ChhhccCC---CC-CceEecCCChHHHHHHHHHHHHHhC-CCC
Confidence 478888886665555556666554 456665433 22222111 00 111112222 122445666665532 347
Q ss_pred EEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEE-eChHHHHHHHHHhcccc
Q 023179 180 TVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAV-ASPSAVRSWVNLISDTE 251 (286)
Q Consensus 180 rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~Ivf-tS~sav~~~~~~~~~~~ 251 (286)
||.++..+.. .+.+.+.|++.|+++.....|... .......+..+ ..+|+|++ .+...+-.++..+.+.+
T Consensus 145 ~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g 222 (392)
T 3lkb_A 145 KVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG--NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLG 222 (392)
T ss_dssp EEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTT
T ss_pred EEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC--CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcC
Confidence 8888865432 346788999999988665555432 12222333322 57899985 77777888888777653
Q ss_pred CCCceEEEe
Q 023179 252 QWSNSVACI 260 (286)
Q Consensus 252 ~~~~~iv~I 260 (286)
.+.+++..
T Consensus 223 -~~~~~~~~ 230 (392)
T 3lkb_A 223 -LKMRHLGA 230 (392)
T ss_dssp -CCCEEEEC
T ss_pred -CCceEEEe
Confidence 25666654
No 162
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=65.84 E-value=37 Score=33.65 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=69.8
Q ss_pred CCeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-----HHHHHHHH
Q 023179 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-----EAGSVFLE 119 (286)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~-----~av~~~~~ 119 (286)
..+|++....++ ..-....|+..|++|+..+.... .+++-+.. ...+.|.|.+.|- ..+..+.+
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~-----~eeiv~aA-~e~~adiVglSsl~~~~~~~~~~vi~ 669 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQT-----PEETARQA-VEADVHVVGVSSLAGGHLTLVPALRK 669 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBC-----HHHHHHHH-HHTTCSEEEEEECSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCC-----HHHHHHHH-HHcCCCEEEEeeecHhHHHHHHHHHH
Confidence 457777766543 24566688899999998765432 13333333 2357899988873 34556677
Q ss_pred HHHHcCCCCcEEEEEC---hhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc
Q 023179 120 AWKEAGTPNVRIGVVG---AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (286)
Q Consensus 120 ~l~~~~~~~~~i~aVG---~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~ 172 (286)
.+++.+..+++|++=| ..-.+.+++. |+.-.+.| +.+...++..+.
T Consensus 670 ~L~~~G~~~i~VivGG~~p~~d~~~l~~~------GaD~~f~~-gt~~~e~a~~l~ 718 (727)
T 1req_A 670 ELDKLGRPDILITVGGVIPEQDFDELRKD------GAVEIYTP-GTVIPESAISLV 718 (727)
T ss_dssp HHHHTTCTTSEEEEEESCCGGGHHHHHHT------TEEEEECT-TCCHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEcCCCccccHHHHHhC------CCCEEEcC-CccHHHHHHHHH
Confidence 7888887677666654 2234778888 98775654 345555555553
No 163
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*
Probab=65.70 E-value=38 Score=29.89 Aligned_cols=197 Identities=9% Similarity=0.051 Sum_probs=102.8
Q ss_pred CeEEEeCCCCchHHHHHHHHhC--CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCC
Q 023179 51 PKVVVTRERGKNGKLIKALAKH--RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTP 127 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~--G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~~~~~ 127 (286)
|+|+++..........+.|++. |+++...+-. .. +++ .+.+.++|.++..+...+ +.+++.+...
T Consensus 2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~----~~--~~~---~~~~~~~d~~i~~~~~~~~~~~l~~~~~~--- 69 (333)
T 1j4a_A 2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKL----LT--PET---VALAKGADGVVVYQQLDYIAETLQALADN--- 69 (333)
T ss_dssp CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSC----CC--TTT---GGGGTTCSEEEECCSSCBCHHHHHHHHHT---
T ss_pred cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCC----Cc--HHH---HHHhcCCcEEEEcCCCCCCHHHHHhcccc---
Confidence 5788876554455566667653 5565543321 11 111 223577899887542111 2344555432
Q ss_pred CcEEEE-EChhh----HHHHHHhhhccCCCCceeccCCCCCHHHHHHhc-------c-------------cC--------
Q 023179 128 NVRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL-------P-------------KN-------- 174 (286)
Q Consensus 128 ~~~i~a-VG~~T----a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L-------~-------------~~-------- 174 (286)
++|+++ .|.++ .+++++. |+.+..+|. .+.+.+++.. . .|
T Consensus 70 ~Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~ 142 (333)
T 1j4a_A 70 GITKMSLRNVGVDNIDMAKAKEL------GFQITNVPV-YSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGR 142 (333)
T ss_dssp TCCEEEESSSCCTTBCHHHHHHT------TCEEECCCC-SCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBC
T ss_pred CCeEEEECCcccccccHHHHHhC------CCEEEeCCC-CCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccc
Confidence 244433 23332 3566777 998877764 4444433221 0 01
Q ss_pred CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCC------CcHHHHHHcCCCCEEEEeChHHH-------H
Q 023179 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHH------VDQTVLKQALSIPVVAVASPSAV-------R 241 (286)
Q Consensus 175 ~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~------~~~~~~~~~~~~d~IvftS~sav-------~ 241 (286)
...|+++.++....-...+...|+..|++|. +|.+.+... ......+.+...|+|++.-|..- +
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~ 219 (333)
T 1j4a_A 143 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVI---TYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMIND 219 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEE---EECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSH
T ss_pred cCCCCEEEEEccCHHHHHHHHHHHHCCCEEE---EECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhH
Confidence 1256789888766666678899999998764 444322110 00011111246799998877432 2
Q ss_pred HHHHHhccccCCCceEEEeC-------HHHHHHHHHcCC
Q 023179 242 SWVNLISDTEQWSNSVACIG-------ETTASAAKRLGL 273 (286)
Q Consensus 242 ~~~~~~~~~~~~~~~iv~IG-------~~Ta~~l~~~G~ 273 (286)
.++..++. +..++-+| ....+++++-++
T Consensus 220 ~~l~~mk~----ga~lIn~arg~~vd~~aL~~aL~~g~i 254 (333)
T 1j4a_A 220 ESIAKMKQ----DVVIVNVSRGPLVDTDAVIRGLDSGKI 254 (333)
T ss_dssp HHHHHSCT----TEEEEECSCGGGBCHHHHHHHHHHTSE
T ss_pred HHHhhCCC----CcEEEECCCCcccCHHHHHHHHHhCCc
Confidence 34455543 23344333 455667776433
No 164
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=65.70 E-value=8 Score=36.91 Aligned_cols=143 Identities=10% Similarity=0.050 Sum_probs=84.0
Q ss_pred CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CCCCcEEEEEC-hh
Q 023179 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPNVRIGVVG-AG 137 (286)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~-~~~~~~i~aVG-~~ 137 (286)
++..++.+.|++.|+++..+. ......+ .+.+....+.-+..++.......+.+++. +.+-+.+.-+| ..
T Consensus 219 gD~~eikrlL~~~Gi~v~~~~----~gg~t~~----ei~~~~~A~~niv~~~~~~~~~A~~Leer~GiP~i~~~piG~~~ 290 (533)
T 1mio_A 219 GDAWEMDRVLEKIGYHVNATL----TGDATYE----KVQNADKADLNLVQCHRSINYIAEMMETKYGIPWIKCNFIGVDG 290 (533)
T ss_dssp SHHHHHHHHHHHHTCEEEEEE----ETTCCHH----HHHBTTSCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHH
T ss_pred hhHHHHHHHHHHCCCeEEEEe----CCCCCHH----HHHhhhcCCEEEEECHHHHHHHHHHHHHHhCCCeEEecCCCHHH
Confidence 345799999999999988521 1111222 24477888888888887777777777543 44433333467 56
Q ss_pred hHHHHHHhhhccCCCCce--eccCCCC--CHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeee
Q 023179 138 TASIFEEVIQSSKCSLDV--AFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYT 211 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~~--~~~~~~~--~~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~ 211 (286)
|.+.|++..+.- |... +-+++.- --..+.+.|... ...|+|+++..+....-.+...|.+.|++|..+-++.
T Consensus 291 T~~~Lr~ia~~~--g~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~GKrv~i~~~~~~~~~l~~~l~ElGm~vv~~~t~~ 368 (533)
T 1mio_A 291 IVETLRDMAKCF--DDPELTKRTEEVIAEEIAAIQDDLDYFKEKLQGKTACLYVGGSRSHTYMNMLKSFGVDSLVAGFEF 368 (533)
T ss_dssp HHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEESSSHHHHHHHHHHHHTCEEEEEEESS
T ss_pred HHHHHHHHHHHh--CCCcccccchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCchHHHHHHHHHHHCCCEEEEEEecc
Confidence 888888863211 3200 0000000 000111222211 1267899888777666678889999999997766554
Q ss_pred e
Q 023179 212 T 212 (286)
Q Consensus 212 ~ 212 (286)
.
T Consensus 369 ~ 369 (533)
T 1mio_A 369 A 369 (533)
T ss_dssp C
T ss_pred C
Confidence 3
No 165
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=65.36 E-value=6.6 Score=37.34 Aligned_cols=141 Identities=12% Similarity=-0.004 Sum_probs=82.6
Q ss_pred hHHHHHHHHhCCCcEEEeceE------------EeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CCCC
Q 023179 62 NGKLIKALAKHRIDCLELPLI------------QHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPN 128 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~------------~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~-~~~~ 128 (286)
..++.+.|++.|+++..+|-+ ..-+.. ..+++ +.++.+...-+..++.......+.+++. +.+-
T Consensus 233 ~~eik~lL~~~Gi~v~~lpd~s~~ld~~~~~~~~~~~gg--~~~~e-i~~~~~A~~niv~~~~~~~~~A~~Le~r~GiP~ 309 (519)
T 1qgu_B 233 FRVLKRMMEQMAVPCSLLSDPSEVLDTPADGHYRMYSGG--TTQQE-MKEAPDAIDTLLLQPWQLLKSKKVVQEMWNQPA 309 (519)
T ss_dssp HHHHHHHHHHHTCCEEESSCTTTTTSCCCSSCCCSCCCC--BCHHH-HHHGGGEEEEEESSTTTCHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHcCCeEEEecCccccccCcccCcccccCCC--CCHHH-HHhhhcCCEEEEECHHHHHHHHHHHHHHcCCCe
Confidence 479999999999999987754 222211 12222 3355667777777776545566666654 4444
Q ss_pred cEE-EEEC-hhhHHHHHHhhhccCCCCceeccCCCC--CHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCC
Q 023179 129 VRI-GVVG-AGTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGF 202 (286)
Q Consensus 129 ~~i-~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~--~~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~L~~~G~ 202 (286)
+.. +-+| ..|.+.|++..+.- |.. +|+.. --..+.+.+... ...|+|+++..+..-.-.|...|.+.|+
T Consensus 310 i~~~~PiG~~~T~~~L~~la~~~--g~~---~~~~i~~er~~~~~~l~d~~~~l~Gkrv~i~gd~~~~~~la~~L~ElGm 384 (519)
T 1qgu_B 310 TEVAIPLGLAATDELLMTVSQLS--GKP---IADALTLERGRLVDMMLDSHTWLHGKKFGLYGDPDFVMGLTRFLLELGC 384 (519)
T ss_dssp CCCCCCBSHHHHHHHHHHHHHHH--CCC---CCHHHHHHHHHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred EecCCCcchHHHHHHHHHHHHHH--CCC---cHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHCCC
Confidence 443 2378 77888888863221 322 11100 011233333321 1267899988754444456678899999
Q ss_pred eeEEEEee
Q 023179 203 EVVRLNTY 210 (286)
Q Consensus 203 ~V~~~~vY 210 (286)
+|..+.+.
T Consensus 385 ~vv~v~~~ 392 (519)
T 1qgu_B 385 EPTVILSH 392 (519)
T ss_dssp EEEEEEET
T ss_pred EEEEEEeC
Confidence 88665553
No 166
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=65.07 E-value=3.7 Score=35.89 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=25.8
Q ss_pred CCCeEEEeCCCCc--------hHHHHHHHHhCCCcEEEeceEEee
Q 023179 49 SNPKVVVTRERGK--------NGKLIKALAKHRIDCLELPLIQHA 85 (286)
Q Consensus 49 ~g~~VLitR~~~~--------~~~l~~~L~~~G~~v~~~P~~~~~ 85 (286)
..|+|||.-..+. .+...+.|++.|.+|..+-++...
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~ 65 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMR 65 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTT
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccC
Confidence 3588888855443 245677888999999888776643
No 167
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=64.88 E-value=36 Score=31.13 Aligned_cols=103 Identities=11% Similarity=0.012 Sum_probs=62.2
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceE------------EeeeCC-CchHHHHHHhcCCCccEEEEeCHHHHHH
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLI------------QHAQGP-DTDRLSSVLNADTIFDWIIITSPEAGSV 116 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~------------~~~~~~-~~~~l~~~l~~~~~~d~IvFTS~~av~~ 116 (286)
+++|+|.--..-+..+++.|.+.|+.++.+-.= ...... ....+.... .+...|.||.+.++....
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~a-gi~~A~~viv~~~~~~~n 82 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESA-GAAKAEVLINAIDDPQTN 82 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHT-TTTTCSEEEECCSSHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhc-CCCccCEEEECCCChHHH
Confidence 467888877666788888998888877654311 111111 112222222 467899999988765443
Q ss_pred H--HHHHHHcCCCCcEEEE--EChhhHHHHHHhhhccCCCCceeccCC
Q 023179 117 F--LEAWKEAGTPNVRIGV--VGAGTASIFEEVIQSSKCSLDVAFSPS 160 (286)
Q Consensus 117 ~--~~~l~~~~~~~~~i~a--VG~~Ta~~L~~~~~~~~~G~~~~~~~~ 160 (286)
. ...+++.+ .+.+|++ -...-...|++. |...++.|.
T Consensus 83 ~~i~~~ar~~~-p~~~Iiara~~~~~~~~L~~~------Gad~Vi~~~ 123 (413)
T 3l9w_A 83 LQLTEMVKEHF-PHLQIIARARDVDHYIRLRQA------GVEKPERET 123 (413)
T ss_dssp HHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHT------TCSSCEETT
T ss_pred HHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHC------CCCEEECcc
Confidence 3 33344443 3455554 467778888888 988765443
No 168
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=64.85 E-value=9.9 Score=30.94 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=44.4
Q ss_pred CEEEEEcCCCCh----h----HHHH----HHHhC--CCeeEEEEeeeeecC-------CCCc---HHHHHHcCCCCEEEE
Q 023179 179 CTVLYPASAKAS----N----EIEE----GLSNR--GFEVVRLNTYTTEPV-------HHVD---QTVLKQALSIPVVAV 234 (286)
Q Consensus 179 ~rvL~~~g~~~~----~----~L~~----~L~~~--G~~V~~~~vY~~~~~-------~~~~---~~~~~~~~~~d~Ivf 234 (286)
+||+++.|.... . .+.+ .|++. |++|+.+.+++.... .... .++.+.+...|.|||
T Consensus 12 ~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~ivi 91 (191)
T 3k1y_A 12 RTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLVV 91 (191)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEEE
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEEE
Confidence 577777665542 2 2333 44444 778887777655421 0111 233444578999999
Q ss_pred eCh-------HHHHHHHHHhccc
Q 023179 235 ASP-------SAVRSWVNLISDT 250 (286)
Q Consensus 235 tS~-------sav~~~~~~~~~~ 250 (286)
.|| ..+++|++.+...
T Consensus 92 ~sP~Y~~~~~~~lK~~iD~~~~~ 114 (191)
T 3k1y_A 92 ATPVFKASYTGLFKMFFDILDTD 114 (191)
T ss_dssp EEECBTTBSCHHHHHHHHHSCTT
T ss_pred EcCccCCcCcHHHHHHHHHhhhh
Confidence 986 6899999998653
No 169
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1
Probab=64.81 E-value=42 Score=29.66 Aligned_cols=170 Identities=12% Similarity=0.042 Sum_probs=87.0
Q ss_pred CeEEEeCCCCchHHHHHHHH-hCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCC
Q 023179 51 PKVVVTRERGKNGKLIKALA-KHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~-~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~~~~~~ 128 (286)
|+|+++..........+.|. ..|+++...+-. .. +++ .+.+.++|.|+..+...+ +.+++.+... +
T Consensus 1 Mkil~~~~~~~~~~~~~~l~~~~~~~v~~~~~~----~~--~~~---~~~~~~~d~~i~~~~~~~~~~~l~~~~~~---~ 68 (333)
T 1dxy_A 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEF----LD--ENT---VEWAKGFDGINSLQTTPYAAGVFEKMHAY---G 68 (333)
T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSC----CC--TTG---GGGGTTCSEEEECCSSCBCHHHHHHHHHT---T
T ss_pred CEEEEEeccccCHHHHHHHHHhCCeEEEEcCCC----Ch--HHH---HHHhcCCeEEEEcCCCCCCHHHHHhCccc---C
Confidence 47888654433444445554 357666543321 11 111 223578899887642221 2344555442 2
Q ss_pred cEEEE-EChhh----HHHHHHhhhccCCCCceeccCCCCCHHHHHHh----cc---c----------------------C
Q 023179 129 VRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE----LP---K----------------------N 174 (286)
Q Consensus 129 ~~i~a-VG~~T----a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~----L~---~----------------------~ 174 (286)
+|+++ .|-++ .+++++. |+.+..+|. .+.+.+++. +. + .
T Consensus 69 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 141 (333)
T 1dxy_A 69 IKFLTIRNVGTDNIDMTAMKQY------GIRLSNVPA-YSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGK 141 (333)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCTT-SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCC
T ss_pred ceEEEEcCcccCccCHHHHHhC------CCEEEeCCC-CCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCcc
Confidence 44332 23322 3566777 998877764 343332211 10 0 0
Q ss_pred CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCC--cHHHHHHcCCCCEEEEeChHH
Q 023179 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV--DQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 175 ~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~--~~~~~~~~~~~d~IvftS~sa 239 (286)
...|+++.+++-..-...+...|+..|++|.-+..+........ .....+.+...|+|++.-|..
T Consensus 142 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~ 208 (333)
T 1dxy_A 142 ELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGI 208 (333)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCc
Confidence 12567898887666666789999999987754333322111100 001111134678888887754
No 170
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=64.27 E-value=21 Score=28.35 Aligned_cols=28 Identities=7% Similarity=0.260 Sum_probs=21.9
Q ss_pred HHHHcCCCCEEEEeCh-------HHHHHHHHHhcc
Q 023179 222 VLKQALSIPVVAVASP-------SAVRSWVNLISD 249 (286)
Q Consensus 222 ~~~~~~~~d~IvftS~-------sav~~~~~~~~~ 249 (286)
..+.+...|.|+|.|| ..+++|++.+..
T Consensus 78 ~~~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~ 112 (191)
T 1t0i_A 78 WSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH 112 (191)
T ss_dssp HHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST
T ss_pred HHHHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh
Confidence 3444678999999995 789999998753
No 171
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=64.25 E-value=18 Score=28.23 Aligned_cols=80 Identities=15% Similarity=0.114 Sum_probs=44.4
Q ss_pred CeEEEe--CCCCchH----HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH-----HHHHHH
Q 023179 51 PKVVVT--RERGKNG----KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-----GSVFLE 119 (286)
Q Consensus 51 ~~VLit--R~~~~~~----~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a-----v~~~~~ 119 (286)
++|+|. .+.+... .+++.|++.|+++..+.+ ....+.+.+ +..+..+|.|||-||.= ...|++
T Consensus 5 ~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~---~~~~~~~~~---~~~~~~~d~ii~Gspty~g~~p~~~~l~ 78 (159)
T 3fni_A 5 TSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDL---GAAVDLQEL---RELVGRCTGLVIGMSPAASAASIQGALS 78 (159)
T ss_dssp CEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEES---SSCCCHHHH---HHHHHTEEEEEEECCBTTSHHHHHHHHH
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEEC---cCcCCHHHH---HHHHHhCCEEEEEcCcCCCCccHHHHHH
Confidence 455544 3334444 455556677876654333 221022322 22346799999999841 134566
Q ss_pred HHHHcCCCCcEEEEECh
Q 023179 120 AWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 120 ~l~~~~~~~~~i~aVG~ 136 (286)
.+......+.++++.|.
T Consensus 79 ~l~~~~~~~k~va~fgs 95 (159)
T 3fni_A 79 TILGSVNEKQAVGIFET 95 (159)
T ss_dssp HHHHHCCTTSEEEEECC
T ss_pred HHHhhcccCCEEEEEEc
Confidence 66555566778887774
No 172
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=64.10 E-value=28 Score=28.37 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=27.2
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEe
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (286)
..+.|++||||-.... +..+++.|.++|++|+.+
T Consensus 3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~ 37 (244)
T 1cyd_A 3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAV 37 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 3577999999987653 678999999999987643
No 173
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}
Probab=63.74 E-value=30 Score=29.00 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=28.1
Q ss_pred CCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 45 ~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
...+.|++||||-... -+..+++.|.++|++|+.+
T Consensus 5 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~ 40 (267)
T 3t4x_A 5 HMQLKGKTALVTGSTAGIGKAIATSLVAEGANVLIN 40 (267)
T ss_dssp CCCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3567899999998765 3678999999999987643
No 174
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=63.72 E-value=43 Score=29.42 Aligned_cols=146 Identities=7% Similarity=-0.076 Sum_probs=81.5
Q ss_pred CCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCC
Q 023179 100 DTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (286)
Q Consensus 100 ~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~ 178 (286)
....+.||-.++.........+.+. +++++..+... ... .. .......+.. ..+..+++.+.+.. ..
T Consensus 74 ~~~V~~iiG~~s~~~~a~~~~~~~~---~iP~i~~~~~~-~~~-~~------~~~f~~~~~~~~~~~~~~~~l~~~~-g~ 141 (391)
T 3eaf_A 74 RYGVIAIIGWGTADTEKLSDQVDTD---KITYISASYSA-KLL-VK------PFNFYPAPDYSTQACSGLAFLASEF-GQ 141 (391)
T ss_dssp TTCCSEEEECCHHHHHHHHHHHHHH---TCEEEESCCCG-GGT-TS------TTEECSSCCHHHHHHHHHHHHHHHH-CS
T ss_pred hcCcEEEEEcCcHHHHHHHHHHhhc---CCeEEecccch-hhc-CC------CcEEEeCCCHHHHHHHHHHHHHHhc-CC
Confidence 4678999886666555556655553 56676654332 221 22 2222223321 22445556655421 33
Q ss_pred CEEEEEcC-CC-----ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--c--CCCCEEEEeCh-HHHHHHHHHh
Q 023179 179 CTVLYPAS-AK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--A--LSIPVVAVASP-SAVRSWVNLI 247 (286)
Q Consensus 179 ~rvL~~~g-~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~--~~~d~IvftS~-sav~~~~~~~ 247 (286)
+||.++.+ +. ..+.+.+.|++.|++|.....|... .......+.. + ..+|+|++.+. ..+-.++..+
T Consensus 142 ~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~ 219 (391)
T 3eaf_A 142 GKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLR--ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAM 219 (391)
T ss_dssp EEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTT--CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHH
T ss_pred CEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCC--CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHH
Confidence 78888876 33 3456778889999887655555431 1112222333 2 57999988876 6666777776
Q ss_pred ccccCCCceEEEe
Q 023179 248 SDTEQWSNSVACI 260 (286)
Q Consensus 248 ~~~~~~~~~iv~I 260 (286)
.+.+ ...+++..
T Consensus 220 ~~~g-~~~~~~~~ 231 (391)
T 3eaf_A 220 AKVG-LDAFLLTN 231 (391)
T ss_dssp HHHT-CCCEEEEC
T ss_pred HHCC-CCceEEEe
Confidence 6543 24566554
No 175
>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}
Probab=63.61 E-value=4.3 Score=33.36 Aligned_cols=63 Identities=16% Similarity=0.116 Sum_probs=40.0
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC
Q 023179 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (286)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS 110 (286)
+.|+++|||-... -...+++.|.++|++|...---......|.+.+.+.++.++..|.+|...
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~nA 67 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVTA 67 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEECC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEECC
Confidence 5689999998765 36789999999999876543211122233445555555556677776543
No 176
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=63.32 E-value=48 Score=30.26 Aligned_cols=111 Identities=13% Similarity=0.080 Sum_probs=61.2
Q ss_pred eeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEE
Q 023179 155 VAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVV 232 (286)
Q Consensus 155 ~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~I 232 (286)
+.++.-+..+..+++.|.+. |.+|+++--+. ...+.+++.|+.| |.- +......++. +...++|
T Consensus 7 viIiG~Gr~G~~va~~L~~~---g~~vvvId~d~---~~v~~~~~~g~~v-----i~G---Dat~~~~L~~agi~~A~~v 72 (413)
T 3l9w_A 7 VIIAGFGRFGQITGRLLLSS---GVKMVVLDHDP---DHIETLRKFGMKV-----FYG---DATRMDLLESAGAAKAEVL 72 (413)
T ss_dssp EEEECCSHHHHHHHHHHHHT---TCCEEEEECCH---HHHHHHHHTTCCC-----EES---CTTCHHHHHHTTTTTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHC---CCCEEEEECCH---HHHHHHHhCCCeE-----EEc---CCCCHHHHHhcCCCccCEE
Confidence 44444444455666666552 34566664332 2344555556332 222 2222344544 3689999
Q ss_pred EEeChHHHHHHH--HHhccccCCCceEE--EeCHHHHHHHHHcCCCeEEeCC
Q 023179 233 AVASPSAVRSWV--NLISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYPT 280 (286)
Q Consensus 233 vftS~sav~~~~--~~~~~~~~~~~~iv--~IG~~Ta~~l~~~G~~~v~~~~ 280 (286)
+++.+....+.. ..++... .+.+++ +-.+.-...+++.|...++.|.
T Consensus 73 iv~~~~~~~n~~i~~~ar~~~-p~~~Iiara~~~~~~~~L~~~Gad~Vi~~~ 123 (413)
T 3l9w_A 73 INAIDDPQTNLQLTEMVKEHF-PHLQIIARARDVDHYIRLRQAGVEKPERET 123 (413)
T ss_dssp EECCSSHHHHHHHHHHHHHHC-TTCEEEEEESSHHHHHHHHHTTCSSCEETT
T ss_pred EECCCChHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHCCCCEEECcc
Confidence 988776554443 2333221 234444 5588999999999999876543
No 177
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=62.94 E-value=16 Score=29.22 Aligned_cols=73 Identities=7% Similarity=-0.091 Sum_probs=42.5
Q ss_pred CeEEEeCCC----CchHHHHHHHHhC---CCcEEEeceEEeeeC-------CCchHHHHHHhcCCCccEEEEeCH-----
Q 023179 51 PKVVVTRER----GKNGKLIKALAKH---RIDCLELPLIQHAQG-------PDTDRLSSVLNADTIFDWIIITSP----- 111 (286)
Q Consensus 51 ~~VLitR~~----~~~~~l~~~L~~~---G~~v~~~P~~~~~~~-------~~~~~l~~~l~~~~~~d~IvFTS~----- 111 (286)
++||+.-.. +.+..+++.+.+. |.++..+.+...... ...+.+....+.+..+|.|||.||
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~~ 86 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYS 86 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETTE
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccccccC
Confidence 577766333 3456777776542 666666655442110 001234444445677999999996
Q ss_pred --HHHHHHHHHHHH
Q 023179 112 --EAGSVFLEAWKE 123 (286)
Q Consensus 112 --~av~~~~~~l~~ 123 (286)
..++.|++.+..
T Consensus 87 ~p~~lK~~iD~~~~ 100 (193)
T 1rtt_A 87 MAGVLKNAIDWASR 100 (193)
T ss_dssp ECHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhcc
Confidence 466777776643
No 178
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}
Probab=62.80 E-value=31 Score=29.26 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=27.6
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
..+.|++||||-... -+..+++.|.++|++|+.+
T Consensus 12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~ 46 (291)
T 3rd5_A 12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMA 46 (291)
T ss_dssp CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 467899999998765 3678999999999987643
No 179
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=62.75 E-value=82 Score=27.86 Aligned_cols=253 Identities=9% Similarity=0.044 Sum_probs=123.8
Q ss_pred CceeeeeeccCCCCCCcchhhhhcCCCCC-CCCccccccccccccCCCCCCCeEEEeCCCCc--hHHHHHH------HHh
Q 023179 1 MAQVSLFSLSSPFPASAVSSRLRLNRPLP-FQFSRIQASSDATSASASNSNPKVVVTRERGK--NGKLIKA------LAK 71 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~--~~~l~~~------L~~ 71 (286)
|..+-+|+.++.++....=+... +..+- .+...|-.=+....-....+|+.|.|..+... ++.|.+. |+.
T Consensus 1 m~~~~if~g~~~~~La~~ia~~l-g~~l~~~~~~~F~dGE~~v~i~esvrg~dV~iiqs~~~p~nd~lmeLl~~idA~k~ 79 (326)
T 3s5j_B 1 MPNIKIFSGSSHQDLSQKIADRL-GLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKI 79 (326)
T ss_dssp --CEEEEECSSCCHHHHHHHHHT-TCCCCCEEEEECTTSCEEEEECSCCTTCEEEEECCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCHHHHHHHHHHh-CCceeeeEEeECCCCCEEEEECCCcCCCcEEEEecCCCCccHHHHHHHHHHHHHHh
Confidence 66778999888876553323222 33221 12111111000011125688999998877542 5555544 456
Q ss_pred CCCcEEE--eceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhcc
Q 023179 72 HRIDCLE--LPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSS 149 (286)
Q Consensus 72 ~G~~v~~--~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~ 149 (286)
.|+.-+. +|.|-.-. .|.. ...-+ |-+.+.+.+.+...|.+ +++++-....+. +.+|
T Consensus 80 asA~rIt~ViPY~~YaR-QDr~--------~~~re------pisak~vA~lL~~~G~d--rvit~DlH~~qi-qgfF--- 138 (326)
T 3s5j_B 80 ASASRVTAVIPCFPYAR-QDKK--------DKSRA------PISAKLVANMLSVAGAD--HIITMDLHASQI-QGFF--- 138 (326)
T ss_dssp TTCSEEEEEESSCTTTT-CCSC--------TTSSC------CCHHHHHHHHHHHHTCS--EEEEESCSSGGG-GGGC---
T ss_pred cCCcEEEEeccCccccc-cCCc--------CCCCC------CEeHHHHHHHHHHcCCC--EEEEEeCCChHH-Hhhc---
Confidence 6765443 44443321 1110 11111 23455566666555543 677777776433 3443
Q ss_pred CCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHh-CCCeeEEEEeeeeecCCCCcHHHHHHcCC
Q 023179 150 KCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSN-RGFEVVRLNTYTTEPVHHVDQTVLKQALS 228 (286)
Q Consensus 150 ~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~-~G~~V~~~~vY~~~~~~~~~~~~~~~~~~ 228 (286)
.+.++.. .....|++.|.+.....+..+++.-+.+.-.+...|.+ .|..+..+.-++..+-.............
T Consensus 139 --~ipvd~l---~a~p~l~~~i~~~~~~~~~~vVVspd~Ggv~~A~~lA~~L~~~~~~i~K~r~~~~~v~~~~l~g~v~g 213 (326)
T 3s5j_B 139 --DIPVDNL---YAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFALIHKERKKANEVDRMVLVGDVKD 213 (326)
T ss_dssp --SSCEEEE---CSHHHHHHHHHHHCTTGGGCEEEESSGGGHHHHHHHHHHHTCEEEEEEEC-------CCEEEESCCTT
T ss_pred --CCceece---EcHHHHHHHHHHhcCcCCCcEEEEECCCchHHHHHHHHHcCCCEEEEEEEecCCCeeeEEeccccCCC
Confidence 4444433 23455667776543222456666666665444444432 25554433322211100000000001123
Q ss_pred CCEEE----EeChHHHHHHHHHhccccCCCceEEEe----CHHHHHHHHHcCCCeEEeCC
Q 023179 229 IPVVA----VASPSAVRSWVNLISDTEQWSNSVACI----GETTASAAKRLGLKNVYYPT 280 (286)
Q Consensus 229 ~d~Iv----ftS~sav~~~~~~~~~~~~~~~~iv~I----G~~Ta~~l~~~G~~~v~~~~ 280 (286)
-++|+ ++++.++....+.+++.+...+.++|. .+...+.+++.++..+++.+
T Consensus 214 k~viIVDDii~TG~Tl~~a~~~L~~~Ga~~v~~~~tH~v~~~~a~e~l~~~~i~~vv~t~ 273 (326)
T 3s5j_B 214 RVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTN 273 (326)
T ss_dssp SEEEEEEEEESSCHHHHHHHHHHHHTTCSEEEEEEEEECCCTTHHHHHHHSCCSEEEEET
T ss_pred CEEEEEccccCCcHHHHHHHHHHHHcCCCEEEEEEEecccCchHHHHHhhCCCCEEEEec
Confidence 34443 588888888888887755434555552 45677888888998877654
No 180
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=62.36 E-value=4.1 Score=32.36 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=50.5
Q ss_pred chHHHHHHHHhCCCcEEEeceEEeeeC---CCch--HHHHHHhcCCCccEEEEeCHHH-HHHHHHHHHHcCCC-CcEEEE
Q 023179 61 KNGKLIKALAKHRIDCLELPLIQHAQG---PDTD--RLSSVLNADTIFDWIIITSPEA-GSVFLEAWKEAGTP-NVRIGV 133 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~---~~~~--~l~~~l~~~~~~d~IvFTS~~a-v~~~~~~l~~~~~~-~~~i~a 133 (286)
....+.+.|...|+++...|+.+.... .+.+ -....++....+|.+|+.|.-+ ...+++.+.+ . +.++.+
T Consensus 62 ~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLvSgD~DF~plv~~lr~---~~G~~V~v 138 (165)
T 2qip_A 62 KQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILVSGDGDFSLLVERIQQ---RYNKKVTV 138 (165)
T ss_dssp HHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEECCCGGGHHHHHHHHH---HHCCEEEE
T ss_pred hHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEEECChhHHHHHHHHHH---HcCcEEEE
Confidence 346788999999999999998754321 1211 1112332236789998888866 2222344444 2 567777
Q ss_pred ECh--hhHHHHHHh
Q 023179 134 VGA--GTASIFEEV 145 (286)
Q Consensus 134 VG~--~Ta~~L~~~ 145 (286)
+|. .|...|++.
T Consensus 139 ~g~~~~~s~~L~~~ 152 (165)
T 2qip_A 139 YGVPRLTSQTLIDC 152 (165)
T ss_dssp EECGGGSCHHHHHH
T ss_pred EeCCCcChHHHHHh
Confidence 774 367777777
No 181
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=61.79 E-value=28 Score=29.07 Aligned_cols=76 Identities=12% Similarity=0.001 Sum_probs=52.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhH
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta 139 (286)
.-+.+.|+++|..+.....+......+ .+.+.+.|+....+|+|+.++-. +..+++.+.+.|++++.++..+....
T Consensus 159 ~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~-a~g~~~al~~~g~~di~vig~d~~~~ 236 (304)
T 3gbv_A 159 IGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK-VYIIGEYLQQRRKSDFSLIGYDLLER 236 (304)
T ss_dssp HHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC-THHHHHHHHHTTCCSCEEEEESCCHH
T ss_pred HHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc-hHHHHHHHHHcCCCCcEEEEeCCCHH
Confidence 456677888888766554443332222 24566667555678999999888 66678888888887788888876653
No 182
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=61.57 E-value=49 Score=29.31 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=53.2
Q ss_pred CCEEEEE-cCCCCh-----hHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChH-------HHHHHH
Q 023179 178 KCTVLYP-ASAKAS-----NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS-------AVRSWV 244 (286)
Q Consensus 178 ~~rvL~~-~g~~~~-----~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~s-------av~~~~ 244 (286)
.++++++ .+..+. +.+.+.|.+.|++++.+.+. +.....+...+..+|.|+|.||. .++.|+
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~-----~~~~~~~~~~~~~~d~ii~gsp~~~~~~~~~~~~~l 326 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCK-----ACHHSQIMSEISDAGAVIVGSPTHNNGILPYVAGTL 326 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETT-----TSCHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECC-----CCCHHHHHHHHHHCCEEEEECCccCCCchHHHHHHH
Confidence 3566555 443332 34566777778766444432 12223344445789999999963 688888
Q ss_pred HHhccccCCCceEEEeC---------HHHHHHHHHcCCCeE
Q 023179 245 NLISDTEQWSNSVACIG---------ETTASAAKRLGLKNV 276 (286)
Q Consensus 245 ~~~~~~~~~~~~iv~IG---------~~Ta~~l~~~G~~~v 276 (286)
+.+......+.+++++| ....+.+.++|++.+
T Consensus 327 ~~l~~~~l~~k~~~~f~t~g~~~~a~~~l~~~l~~~G~~~~ 367 (402)
T 1e5d_A 327 QYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMP 367 (402)
T ss_dssp HHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCC
T ss_pred HHhhhcccCCCEEEEEEcCCCccHHHHHHHHHHHHCCCEEe
Confidence 87654222233333321 245566777787653
No 183
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=61.56 E-value=13 Score=28.92 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---HH--HHHHHHHHHcCCCCcEEEEECh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---AG--SVFLEAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~---av--~~~~~~l~~~~~~~~~i~aVG~ 136 (286)
+.+++.|.+.|+++..+.+-. .+.+.+ +..+..+|.|||-||. .+ ..|++.+....+.+.+++++|.
T Consensus 19 ~~ia~~l~~~g~~v~~~~~~~----~~~~~~---~~~~~~~d~ii~Gspty~g~~p~~~fl~~l~~~~l~gk~v~~fgs 90 (161)
T 3hly_A 19 QAIGRGLVKTGVAVEMVDLRA----VDPQEL---IEAVSSARGIVLGTPPSQPSEAVATALSTIFAAAHNKQAIGLFDS 90 (161)
T ss_dssp HHHHHHHHHTTCCEEEEETTT----CCHHHH---HHHHHHCSEEEEECCBSSCCHHHHHHHHHHHHHCCTTSEEEEECC
T ss_pred HHHHHHHHhCCCeEEEEECCC----CCHHHH---HHHHHhCCEEEEEcCCcCCchhHHHHHHHHHhhhhCCCEEEEEEc
Confidence 345556667788765443221 122222 2234568999999873 11 3566666554566778887773
No 184
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=61.55 E-value=11 Score=28.20 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChH---------HHHHHHHHhccccCCCceEEEeC-
Q 023179 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS---------AVRSWVNLISDTEQWSNSVACIG- 261 (286)
Q Consensus 192 ~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~s---------av~~~~~~~~~~~~~~~~iv~IG- 261 (286)
.+.+.|++.|++|+.+.+-+. .. ..+...|.|+|-||. .++.|++.+... +.+.+++++|
T Consensus 18 ~ia~~l~~~g~~v~~~~~~~~-----~~----~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~-l~~k~~~~f~t 87 (138)
T 5nul_A 18 LIAKGIIESGKDVNTINVSDV-----NI----DELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK-ISGKKVALFGS 87 (138)
T ss_dssp HHHHHHHHTTCCCEEEEGGGC-----CH----HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG-CTTCEEEEEEE
T ss_pred HHHHHHHHCCCeEEEEEhhhC-----CH----HHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh-cCCCEEEEEEe
Confidence 456667777877654443221 11 124678888888763 588888877642 2233333331
Q ss_pred ---------HHHHHHHHHcCCCeE
Q 023179 262 ---------ETTASAAKRLGLKNV 276 (286)
Q Consensus 262 ---------~~Ta~~l~~~G~~~v 276 (286)
....+.+++.|++.+
T Consensus 88 ~g~~~~~a~~~l~~~l~~~G~~~v 111 (138)
T 5nul_A 88 YGWGDGKWMRDFEERMNGYGCVVV 111 (138)
T ss_dssp ESSSCSHHHHHHHHHHHHTTCEEC
T ss_pred cCCCCChHHHHHHHHHHHCCCEEE
Confidence 334556677787643
No 185
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=61.43 E-value=2.7 Score=34.13 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=43.8
Q ss_pred CeEEEeCCC----CchHHHHH----H-HHhCCCcEEEeceEEeee------CCCchHHHHHHhcCCCccEEEEeCHH---
Q 023179 51 PKVVVTRER----GKNGKLIK----A-LAKHRIDCLELPLIQHAQ------GPDTDRLSSVLNADTIFDWIIITSPE--- 112 (286)
Q Consensus 51 ~~VLitR~~----~~~~~l~~----~-L~~~G~~v~~~P~~~~~~------~~~~~~l~~~l~~~~~~d~IvFTS~~--- 112 (286)
++|++.-.. +.+..+++ . |++.|.++..+.+..... ....+.+....+.+..+|.|||.||.
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~~ 82 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYKA 82 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBTT
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccCC
Confidence 356555333 33444444 4 555687776655433211 00112344444445679999999975
Q ss_pred ----HHHHHHHHHHHcCCCCcEEEEEC
Q 023179 113 ----AGSVFLEAWKEAGTPNVRIGVVG 135 (286)
Q Consensus 113 ----av~~~~~~l~~~~~~~~~i~aVG 135 (286)
.++.|++.+....+.+.++++++
T Consensus 83 ~~p~~lK~~ld~l~~~~~~gK~~~~~~ 109 (197)
T 2vzf_A 83 SYTGLLKAFLDILPQFALAGKAALPLA 109 (197)
T ss_dssp BCCHHHHHHHTTSCTTTTTTCEEEEEE
T ss_pred CCCHHHHHHHHhccccccCCCEEEEEE
Confidence 44555554422234456665554
No 186
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*
Probab=61.21 E-value=36 Score=30.09 Aligned_cols=165 Identities=16% Similarity=0.139 Sum_probs=90.1
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCC
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~~~~~~ 128 (286)
.++||++.+-. +...+.|++.| ++...+ .....+.+++.+. +.++|.|+..+..-+ +.+++.+ ++
T Consensus 2 ~~kvlv~~~~~--~~~~~~l~~~~-~v~~~~---~~~~~~~~~~~~~---~~~~d~~i~~~~~~i~~~~l~~~-----~~ 67 (330)
T 4e5n_A 2 LPKLVITHRVH--EEILQLLAPHC-ELITNQ---TDSTLTREEILRR---CRDAQAMMAFMPDRVDADFLQAC-----PE 67 (330)
T ss_dssp CCEEEECSCCC--HHHHHHHTTTC-EEECCC---SSSCCCHHHHHHH---HTTCSEEEECTTCCBCHHHHHHC-----TT
T ss_pred CCEEEEecCCC--HHHHHHHHhCC-eEEEec---CCCCCCHHHHHHH---hCCCeEEEEeCCCCCCHHHHhhC-----CC
Confidence 46899998654 56677887775 544322 1111122344443 467899887544332 2233332 35
Q ss_pred cEEEE-EChhh----HHHHHHhhhccCCCCceeccCCCCCHHHHHHhc-------c-------------cC---------
Q 023179 129 VRIGV-VGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL-------P-------------KN--------- 174 (286)
Q Consensus 129 ~~i~a-VG~~T----a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L-------~-------------~~--------- 174 (286)
+++++ .|.+. .+++++. |+.+..+|. .+++.+++.- . +|
T Consensus 68 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~~~-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 140 (330)
T 4e5n_A 68 LRVIGCALKGFDNFDVDACTAR------GVWLTFVPD-LLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYG 140 (330)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCSS-TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCC
T ss_pred CcEEEECCCcccccCHHHHHhc------CcEEEeCCC-CCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccC
Confidence 55543 33333 3667777 998877664 4444443321 0 00
Q ss_pred -CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcH--------HHHHHcCCCCEEEEeChH
Q 023179 175 -GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQ--------TVLKQALSIPVVAVASPS 238 (286)
Q Consensus 175 -~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~--------~~~~~~~~~d~IvftS~s 238 (286)
...|+++.+++-..-...+...|+..|++|. .|.+.+...... ...+.+...|+|++.-|.
T Consensus 141 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~---~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~ 210 (330)
T 4e5n_A 141 TGLDNATVGFLGMGAIGLAMADRLQGWGATLQ---YHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPL 210 (330)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHTTTSCCEEE---EECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCC
T ss_pred CccCCCEEEEEeeCHHHHHHHHHHHHCCCEEE---EECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCC
Confidence 1257789998766666678899998888654 444432110000 011112467888888774
No 187
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=61.15 E-value=71 Score=28.36 Aligned_cols=177 Identities=13% Similarity=0.081 Sum_probs=0.0
Q ss_pred cccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHH
Q 023179 42 TSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAW 121 (286)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l 121 (286)
+..+.....++||++++-. +...+.|++. ++.....+...-++.++.+.++|.|+..+... +-+.+
T Consensus 22 ~~~~~~~~~~~vl~~~~~~--~~~~~~L~~~---------~~v~~~~~~~~~~~~~~~~~~~d~li~~~~~~---i~~~~ 87 (340)
T 4dgs_A 22 SMLEFRNVKPDLLLVEPMM--PFVMDELQRN---------YSVHRLYQAADRPALEAALPSIRAVATGGGAG---LSNEW 87 (340)
T ss_dssp -----------CEECSCCC--HHHHHTHHHH---------SCCEETTCGGGHHHHHHHGGGCCEEEEETTTC---BCHHH
T ss_pred hhhccCCCCCEEEEECCCC--HHHHHHHhcC---------CcEEEeCCCCCHHHHHHHhCCcEEEEEcCCCC---CCHHH
Q ss_pred HHcCCCCcEEEEEChhh----HHHHHHhhhccCCCCceeccCCCCCHHHHHHh---------------------------
Q 023179 122 KEAGTPNVRIGVVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASE--------------------------- 170 (286)
Q Consensus 122 ~~~~~~~~~i~aVG~~T----a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~--------------------------- 170 (286)
.+....-.-|...|-+. .+++++. |+.+..+| +.+++.+++.
T Consensus 88 l~~~p~Lk~I~~~g~G~d~id~~~a~~~------gI~V~n~p-g~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~ 160 (340)
T 4dgs_A 88 MEKLPSLGIIAINGVGTDKVDLARARRR------NIDVTTTP-GVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAG 160 (340)
T ss_dssp HHHCSSCCEEEEESSCCTTBCHHHHHHT------TCEEECCC-SSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC---
T ss_pred HhhCCCCEEEEECCCCccccCHHHHHhC------CEEEEECC-CCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccc
Q ss_pred ---cccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc-CCCCEEEEeChHH
Q 023179 171 ---LPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA-LSIPVVAVASPSA 239 (286)
Q Consensus 171 ---L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~-~~~d~IvftS~sa 239 (286)
.......|+++.+++-..-...+...|+..|.+|..+..+............++++ ...|+|++.-|..
T Consensus 161 ~~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t 233 (340)
T 4dgs_A 161 EQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAAS 233 (340)
T ss_dssp ---CCCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC---
T ss_pred cCcCccccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCC
No 188
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=61.13 E-value=4 Score=34.29 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=45.6
Q ss_pred CEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeeeecCCCC------------------------------cH
Q 023179 179 CTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHV------------------------------DQ 220 (286)
Q Consensus 179 ~rvL~~~g~~~--------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~------------------------------~~ 220 (286)
.|||++-|... .+.+.+.|++.|.+|+.+.+|+....+.. .+
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~~~~P~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~d 81 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNFEPRATDKDITGTLSNPEVFNYGVETHEAYKQRSLAS 81 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTTTCCCCCCGGGBCSCCSCTTSCCHHHHHHHHHHHTCBCH
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhcCCcccCCHHHHhhhccccccccchhhhhhhhhcCCCcH
Confidence 56777755443 23466778888999999999875421110 11
Q ss_pred H---HHHHcCCCCEEEEeCh-------HHHHHHHHHhc
Q 023179 221 T---VLKQALSIPVVAVASP-------SAVRSWVNLIS 248 (286)
Q Consensus 221 ~---~~~~~~~~d~IvftS~-------sav~~~~~~~~ 248 (286)
. ..+.+...|.|||.+| ..+++|++.+-
T Consensus 82 d~~~~~~~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~ 119 (228)
T 3tem_A 82 DITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRVL 119 (228)
T ss_dssp HHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCEEEEECChhhcccCHHHHHHHHHHh
Confidence 1 1222467899999875 68999999864
No 189
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=60.98 E-value=43 Score=24.05 Aligned_cols=110 Identities=13% Similarity=0.103 Sum_probs=62.3
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe---------CHHHHHHHHH
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT---------SPEAGSVFLE 119 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT---------S~~av~~~~~ 119 (286)
.++|||.-... ....+...|++.|+++..+ .+.++....+.. ..+|.|++- ..++.+ +++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~~~~~~~~~~~g~~-~~~ 72 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITL--------SSPVSLSTVLRE-ENPEVVLLDMNFTSGINNGNEGLF-WLH 72 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEE--------CCHHHHHHHHHH-SCEEEEEEETTTTC-----CCHHH-HHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEe--------CCHHHHHHHHHc-CCCCEEEEeCCcCCCCCCCccHHH-HHH
Confidence 46888887664 3467778888888765421 223344445533 468888875 234444 455
Q ss_pred HHHHcCCCCcEEEEEC-hhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC
Q 023179 120 AWKEAGTPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (286)
Q Consensus 120 ~l~~~~~~~~~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~ 174 (286)
.+.+.. ..++++++. ........+.++. |.. ++..+..+.+.|...|...
T Consensus 73 ~l~~~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~kp~~~~~l~~~l~~~ 123 (140)
T 2qr3_A 73 EIKRQY-RDLPVVLFTAYADIDLAVRGIKE---GAS-DFVVKPWDNQKLLETLLNA 123 (140)
T ss_dssp HHHHHC-TTCCEEEEEEGGGHHHHHHHHHT---TCC-EEEEESCCHHHHHHHHHHH
T ss_pred HHHhhC-cCCCEEEEECCCCHHHHHHHHHc---Cch-heeeCCCCHHHHHHHHHHH
Confidence 565543 456665554 3433333333222 554 4555667788887777543
No 190
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=60.97 E-value=8.1 Score=28.73 Aligned_cols=60 Identities=17% Similarity=0.262 Sum_probs=36.5
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-------H--HHHHHHHHHHcCCCCcEEEEE
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------A--GSVFLEAWKEAGTPNVRIGVV 134 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~-------a--v~~~~~~l~~~~~~~~~i~aV 134 (286)
.+.+.|++.|+++..+.+ .+.+ . . .+..+|.|||-||. . ++.|++.+.. .+.+.+++++
T Consensus 19 ~i~~~l~~~g~~v~~~~~------~~~~-~-~---~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~-~l~~k~~~~~ 86 (137)
T 2fz5_A 19 EIEAAVKAAGADVESVRF------EDTN-V-D---DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP-KLKGKKVGLF 86 (137)
T ss_dssp HHHHHHHHTTCCEEEEET------TSCC-H-H---HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-GCSSCEEEEE
T ss_pred HHHHHHHhCCCeEEEEEc------ccCC-H-H---HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh-hcCCCEEEEE
Confidence 444556667887765432 2111 1 1 23568999999886 2 7778876643 3456777776
Q ss_pred C
Q 023179 135 G 135 (286)
Q Consensus 135 G 135 (286)
|
T Consensus 87 ~ 87 (137)
T 2fz5_A 87 G 87 (137)
T ss_dssp E
T ss_pred E
Confidence 6
No 191
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=60.89 E-value=28 Score=29.43 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=26.8
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 48 NSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
+.||.+|||-... -...+++.|.+.|++|...
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~ 41 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVAL 41 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 5799999997764 4678999999999999754
No 192
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=60.79 E-value=6.8 Score=33.46 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=31.7
Q ss_pred CCCCchHHHHHHHHhCCCcEEEeceEEee-eCCCchHHHHHHhcCCCccEEEEeC
Q 023179 57 RERGKNGKLIKALAKHRIDCLELPLIQHA-QGPDTDRLSSVLNADTIFDWIIITS 110 (286)
Q Consensus 57 R~~~~~~~l~~~L~~~G~~v~~~P~~~~~-~~~~~~~l~~~l~~~~~~d~IvFTS 110 (286)
....+...+.+.|++.|+++..+|.-+.. ..++. ++.+..||.|||..
T Consensus 37 ~~~~~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~------~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 37 KYEEGATWLLECLRKGGVDIDYMPAHTVQIAFPES------IDELNRYDVIVISD 85 (256)
T ss_dssp EEEESCHHHHHHHHHTTCEEEEECHHHHHHCCCCS------HHHHHTCSEEEEES
T ss_pred CccccHHHHHHHHHhcCceEEEEecccchhhCCcC------hhHHhcCCEEEEeC
Confidence 34456788999999999999988643111 11211 11346799999986
No 193
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=60.66 E-value=42 Score=23.81 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=62.2
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHHcC
Q 023179 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEAG 125 (286)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l~~~~ 125 (286)
++||+.-... ....+...|++.|+++... .+..+..+.+ ....+|.|+.- ..++.+ +++.+.+..
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~al~~l-~~~~~dlvllD~~~p~~~g~~-~~~~l~~~~ 72 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEA--------ENGQIALEKL-SEFTPDLIVLXIMMPVMDGFT-VLKKLQEKE 72 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHH-TTBCCSEEEECSCCSSSCHHH-HHHHHHTST
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHH-HhcCCCEEEEeccCCCCcHHH-HHHHHHhcc
Confidence 5788887664 3457778888889766422 1233344445 33568877764 234555 455565432
Q ss_pred -CCCcEEEEEC-hhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 126 -TPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 126 -~~~~~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
..+++++++. ........+.++. |.. ++..+..+.+.|...+..
T Consensus 73 ~~~~~pii~~s~~~~~~~~~~~~~~---Ga~-~~l~KP~~~~~L~~~i~~ 118 (122)
T 3gl9_A 73 EWKRIPVIVLTAKGGEEDESLALSL---GAR-KVMRKPFSPSQFIEEVKH 118 (122)
T ss_dssp TTTTSCEEEEESCCSHHHHHHHHHT---TCS-EEEESSCCHHHHHHHHHH
T ss_pred cccCCCEEEEecCCchHHHHHHHhc---Chh-hhccCCCCHHHHHHHHHH
Confidence 3456665544 3333333332222 654 466677888888776643
No 194
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=59.81 E-value=46 Score=24.01 Aligned_cols=109 Identities=11% Similarity=0.117 Sum_probs=61.0
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC------HHHHHHHHHHHH
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS------PEAGSVFLEAWK 122 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS------~~av~~~~~~l~ 122 (286)
..+|||.-... ....+...|++.|+++.... +.++..+.+ ....+|.|++-- .++.+ +++.+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~--------~~~~a~~~l-~~~~~dlvi~D~~l~~~~~~g~~-~~~~l~ 75 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFA--------SAESFMRQQ-ISDDAIGMIIEAHLEDKKDSGIE-LLETLV 75 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEES--------SHHHHTTSC-CCTTEEEEEEETTGGGBTTHHHH-HHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC--------CHHHHHHHH-hccCCCEEEEeCcCCCCCccHHH-HHHHHH
Confidence 46899987765 34577788888887654221 222222222 224688777752 34555 556666
Q ss_pred HcCCCCcEEE-EEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 123 EAGTPNVRIG-VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 123 ~~~~~~~~i~-aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
+.. ..++++ ..+........+.++. |.. ++..+..+.+.|...+..
T Consensus 76 ~~~-~~~~ii~~s~~~~~~~~~~~~~~---ga~-~~l~KP~~~~~l~~~i~~ 122 (136)
T 3kto_A 76 KRG-FHLPTIVMASSSDIPTAVRAMRA---SAA-DFIEKPFIEHVLVHDVQQ 122 (136)
T ss_dssp HTT-CCCCEEEEESSCCHHHHHHHHHT---TCS-EEEESSBCHHHHHHHHHH
T ss_pred hCC-CCCCEEEEEcCCCHHHHHHHHHc---ChH-HheeCCCCHHHHHHHHHH
Confidence 654 445554 4454444333333222 654 455666788888777754
No 195
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=59.73 E-value=47 Score=24.10 Aligned_cols=55 Identities=11% Similarity=-0.040 Sum_probs=32.6
Q ss_pred cCCCCEEEEeChHHHHH--HHHHhccccCCCceEEEeCHHHHHHHHHcCCCeEEeCC
Q 023179 226 ALSIPVVAVASPSAVRS--WVNLISDTEQWSNSVACIGETTASAAKRLGLKNVYYPT 280 (286)
Q Consensus 226 ~~~~d~IvftS~sav~~--~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~~~v~~~~ 280 (286)
+...|+|+.+.+....+ +....+..+...+-+.+-++...+.+++.|...++.|+
T Consensus 67 ~~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~l~~~g~~~v~~p~ 123 (140)
T 1lss_A 67 IEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPE 123 (140)
T ss_dssp TTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHH
T ss_pred cccCCEEEEeeCCchHHHHHHHHHHHcCCCEEEEEecCHhHHHHHHHcCCCEEECHH
Confidence 45789998887654222 22233322211233345577788899999998776664
No 196
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=59.47 E-value=4.6 Score=33.92 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=21.3
Q ss_pred CCeEEEeCCCC----ch----HHHHHHHHhCCCcEEEeceEEe
Q 023179 50 NPKVVVTRERG----KN----GKLIKALAKHRIDCLELPLIQH 84 (286)
Q Consensus 50 g~~VLitR~~~----~~----~~l~~~L~~~G~~v~~~P~~~~ 84 (286)
+|+||+.-..+ .+ +.+.+.|++.|.++..+-++..
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~ 43 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAM 43 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTTT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhhc
Confidence 46777763322 23 3455666677988887766653
No 197
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=58.96 E-value=9.3 Score=30.93 Aligned_cols=58 Identities=22% Similarity=0.293 Sum_probs=39.5
Q ss_pred HHHHHHHhCC--CeeEEEEee--eeecCCCC-----------------------------cHHHHHHcCCCCEEEEeC--
Q 023179 192 EIEEGLSNRG--FEVVRLNTY--TTEPVHHV-----------------------------DQTVLKQALSIPVVAVAS-- 236 (286)
Q Consensus 192 ~L~~~L~~~G--~~V~~~~vY--~~~~~~~~-----------------------------~~~~~~~~~~~d~IvftS-- 236 (286)
.+.+.|++.| .+|+.+.+| +.....-. .....+.+...|.|||.|
T Consensus 25 ~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~aD~iv~~~P~ 104 (208)
T 2hpv_A 25 TFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKVARFNELTDQFLSADKVVIANPM 104 (208)
T ss_dssp HHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhHHHHHHHHHHHHhCCEEEEEecc
Confidence 4677788776 899999988 65421111 011222356899999998
Q ss_pred -----hHHHHHHHHHhcc
Q 023179 237 -----PSAVRSWVNLISD 249 (286)
Q Consensus 237 -----~sav~~~~~~~~~ 249 (286)
|..+++|++.+..
T Consensus 105 y~~~~pa~lK~~iD~~~~ 122 (208)
T 2hpv_A 105 WNLNVPTRLKAWVDTINV 122 (208)
T ss_dssp BTTBCCHHHHHHHHHHCC
T ss_pred ccCCCCHHHHHHHHHHhc
Confidence 6889999998653
No 198
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2
Probab=58.84 E-value=76 Score=26.47 Aligned_cols=33 Identities=15% Similarity=0.229 Sum_probs=26.3
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEe
Q 023179 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (286)
.+.|++||||-.... +..+++.|.+.|++|+.+
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~ 62 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGC 62 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 367899999987653 578999999999987643
No 199
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=58.54 E-value=26 Score=29.72 Aligned_cols=95 Identities=12% Similarity=0.025 Sum_probs=52.6
Q ss_pred CCCCCCCCccccccccccccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-C
Q 023179 25 NRPLPFQFSRIQASSDATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-I 102 (286)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~-~ 102 (286)
.++.+.+..+++... ..+...+.|+++|||-... -+..+++.|.++|++|+.+- .. ....+.+.+.+.... .
T Consensus 10 ~~~~~~~~~~~~~~~--~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~---r~-~~~~~~~~~~~~~~~~~ 83 (275)
T 4imr_A 10 GVDLGTENLYFQSMR--LETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHG---VK-PGSTAAVQQRIIASGGT 83 (275)
T ss_dssp --------CCSCTTS--HHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE---SS-TTTTHHHHHHHHHTTCC
T ss_pred ccCcccccccccccc--ccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEc---CC-HHHHHHHHHHHHhcCCe
Confidence 456666666666522 2334568899999998765 36789999999999876432 11 112233444442221 2
Q ss_pred ccEEE--EeCHHHHHHHHHHHHHcC
Q 023179 103 FDWII--ITSPEAGSVFLEAWKEAG 125 (286)
Q Consensus 103 ~d~Iv--FTS~~av~~~~~~l~~~~ 125 (286)
...+. +++...++.+++.+.+.+
T Consensus 84 ~~~~~~Dv~~~~~~~~~~~~~~~~g 108 (275)
T 4imr_A 84 AQELAGDLSEAGAGTDLIERAEAIA 108 (275)
T ss_dssp EEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred EEEEEecCCCHHHHHHHHHHHHHhC
Confidence 22221 467888888888776653
No 200
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=58.46 E-value=43 Score=28.31 Aligned_cols=91 Identities=8% Similarity=0.040 Sum_probs=50.3
Q ss_pred EEEEEc--CCCChhHHHHHHHhC-CCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEE-EeChHHHHHHHHHhccccCCCc
Q 023179 180 TVLYPA--SAKASNEIEEGLSNR-GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA-VASPSAVRSWVNLISDTEQWSN 255 (286)
Q Consensus 180 rvL~~~--g~~~~~~L~~~L~~~-G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~Iv-ftS~sav~~~~~~~~~~~~~~~ 255 (286)
||.+.. |..++. +.+.+.+. |+++ +.++.+. ...++++. ..+|+|+ ||+|.++...+....+. +.
T Consensus 2 kV~V~Ga~G~mG~~-i~~~~~~~~~~el--va~~d~~---~dl~~~~~--~~~DvvIDfT~p~a~~~~~~~a~~~---g~ 70 (245)
T 1p9l_A 2 RVGVLGAKGKVGTT-MVRAVAAADDLTL--SAELDAG---DPLSLLTD--GNTEVVIDFTHPDVVMGNLEFLIDN---GI 70 (245)
T ss_dssp EEEEETTTSHHHHH-HHHHHHHCTTCEE--EEEECTT---CCTHHHHH--TTCCEEEECSCTTTHHHHHHHHHHT---TC
T ss_pred EEEEECCCCHHHHH-HHHHHHhCCCCEE--EEEEccC---CCHHHHhc--cCCcEEEEccChHHHHHHHHHHHHc---CC
Confidence 566665 333444 55666544 6655 3444431 22333332 4789999 99999998887765543 45
Q ss_pred eEEE----eCHHHHHHHHHc-----CCCeEEeCCCC
Q 023179 256 SVAC----IGETTASAAKRL-----GLKNVYYPTHP 282 (286)
Q Consensus 256 ~iv~----IG~~Ta~~l~~~-----G~~~v~~~~~p 282 (286)
++++ ..+.-.+.+++. +.. ++++.+.
T Consensus 71 ~~VigTTG~~~e~~~~l~~aa~~~~~~~-vv~a~N~ 105 (245)
T 1p9l_A 71 HAVVGTTGFTAERFQQVESWLVAKPNTS-VLIAPNF 105 (245)
T ss_dssp EEEECCCCCCHHHHHHHHHHHHTSTTCE-EEECSCC
T ss_pred CEEEcCCCCCHHHHHHHHHHHHhCCCCC-EEEECCc
Confidence 5555 444434444443 544 3445544
No 201
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=58.17 E-value=48 Score=23.67 Aligned_cols=115 Identities=10% Similarity=0.121 Sum_probs=61.3
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l 121 (286)
++.+++|||.-... ....+.+.|++.|+..+ ... .+..+....+.....+|.|+.- ..++.+ +++.+
T Consensus 2 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~~v----~~~---~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~-~~~~l 73 (129)
T 3h1g_A 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDV----LEA---EHGVEAWEKLDANADTKVLITDWNMPEMNGLD-LVKKV 73 (129)
T ss_dssp ----CCEEEECSCHHHHHHHHHHHHHTTCCCE----EEE---SSHHHHHHHHHHCTTCCEEEECSCCSSSCHHH-HHHHH
T ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHHcCCcEE----EEe---CCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHH-HHHHH
Confidence 34568899997765 45677888888887521 111 1222222334233468877753 234555 45556
Q ss_pred HHcC-CCCcEEEEEC-hhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 122 KEAG-TPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 122 ~~~~-~~~~~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
++.. ...++++++. ........+.++. |.. ++..+..+.+.|...+..
T Consensus 74 r~~~~~~~~pii~~s~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~L~~~l~~ 123 (129)
T 3h1g_A 74 RSDSRFKEIPIIMITAEGGKAEVITALKA---GVN-NYIVKPFTPQVLKEKLEV 123 (129)
T ss_dssp HTSTTCTTCCEEEEESCCSHHHHHHHHHH---TCC-EEEESCCCHHHHHHHHHH
T ss_pred HhcCCCCCCeEEEEeCCCChHHHHHHHHc---Ccc-EEEeCCCCHHHHHHHHHH
Confidence 5532 3456665554 3333332222222 654 466677888888877754
No 202
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=58.12 E-value=18 Score=31.30 Aligned_cols=93 Identities=14% Similarity=0.008 Sum_probs=57.6
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCc-HH-HHHHcCCCCEEEEeChHHHHHHHHHhccccCCC
Q 023179 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD-QT-VLKQALSIPVVAVASPSAVRSWVNLISDTEQWS 254 (286)
Q Consensus 177 ~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~-~~-~~~~~~~~d~IvftS~sav~~~~~~~~~~~~~~ 254 (286)
+|+||.++..- . +.+.+.+.+.+ +.+.++.+.+... .. .-..+...|+|+.|.++-++.-++.+-+.-...
T Consensus 140 ~g~kV~vIG~f---P-~i~~~~~~~~~---l~V~E~~p~~g~~p~~~~~~~lp~~D~viiTgstlvN~Tl~~lL~~~~~a 212 (270)
T 3l5o_A 140 KGKKVGVVGHF---P-HLESLLEPICD---LSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRNA 212 (270)
T ss_dssp TTSEEEEESCC---T-THHHHHTTTSE---EEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTS
T ss_pred CCCEEEEECCc---h-hHHHHHhcCCC---EEEEECCCCCCCCChhHHHHhhccCCEEEEEeehhhcCCHHHHHhhCCCC
Confidence 67899999754 2 34455566654 5666777765432 22 222357899999999998876665544321113
Q ss_pred ceEEEeCHHHHH--HHHHcCCCeE
Q 023179 255 NSVACIGETTAS--AAKRLGLKNV 276 (286)
Q Consensus 255 ~~iv~IG~~Ta~--~l~~~G~~~v 276 (286)
..++.+||+|.- .+-++|+..+
T Consensus 213 ~~vvl~GPStp~~P~lf~~Gv~~l 236 (270)
T 3l5o_A 213 RRITLVGPGTPLAPVLFEHGLQEL 236 (270)
T ss_dssp SEEEEESTTCCCCGGGGGTTCSEE
T ss_pred CEEEEECCCchhhHHHHhcCcCEE
Confidence 467788998632 2445676654
No 203
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=58.05 E-value=16 Score=29.14 Aligned_cols=69 Identities=12% Similarity=0.106 Sum_probs=39.5
Q ss_pred EEEEEcCCC----ChhHHHHHHHh---CCCeeEEEEeeeeecC----------CCCcHHHHHHcCCCCEEEEeCh-----
Q 023179 180 TVLYPASAK----ASNEIEEGLSN---RGFEVVRLNTYTTEPV----------HHVDQTVLKQALSIPVVAVASP----- 237 (286)
Q Consensus 180 rvL~~~g~~----~~~~L~~~L~~---~G~~V~~~~vY~~~~~----------~~~~~~~~~~~~~~d~IvftS~----- 237 (286)
++|++-|.. ....+.+.+.+ .|.+|+.+.+++ .+. ++......+.+...|.|+|.||
T Consensus 8 kilii~gS~r~~g~t~~la~~i~~~l~~g~~v~~~dl~~-~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y~~~ 86 (193)
T 1rtt_A 8 KVLGISGSLRSGSYNSAALQEAIGLVPPGMSIELADISG-IPLYNEDVYALGFPPAVERFREQIRAADALLFATPEYNYS 86 (193)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHTTCCTTCEEEECCCTT-CCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEETTE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhccCCCeEEEEeHHH-CCCCCccccccCCCHHHHHHHHHHHhCCEEEEEccccccC
Confidence 566665442 23334444332 356676666655 111 0111223344568999999995
Q ss_pred --HHHHHHHHHhcc
Q 023179 238 --SAVRSWVNLISD 249 (286)
Q Consensus 238 --sav~~~~~~~~~ 249 (286)
..+++|++.+..
T Consensus 87 ~p~~lK~~iD~~~~ 100 (193)
T 1rtt_A 87 MAGVLKNAIDWASR 100 (193)
T ss_dssp ECHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhcc
Confidence 789999998864
No 204
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=57.88 E-value=40 Score=27.98 Aligned_cols=75 Identities=9% Similarity=-0.042 Sum_probs=47.0
Q ss_pred CCCCCCeEEEeCCCC---chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCC--ccEEE--EeCHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERG---KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI--FDWII--ITSPEAGSVFL 118 (286)
Q Consensus 46 ~~l~g~~VLitR~~~---~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~--~d~Iv--FTS~~av~~~~ 118 (286)
..+.|++||||-..+ -+..+++.|.++|++|+.+ .+.. ...+.+.+..+.... ..++. ++++.+++.++
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~--~r~~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFT--YAGE--RLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCF 78 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEE--ESSG--GGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHH
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEe--cCch--HHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHH
Confidence 457899999998753 4778999999999987643 1111 111333333322222 22222 47889999888
Q ss_pred HHHHHc
Q 023179 119 EAWKEA 124 (286)
Q Consensus 119 ~~l~~~ 124 (286)
+.+.+.
T Consensus 79 ~~~~~~ 84 (266)
T 3oig_A 79 ASIKEQ 84 (266)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877553
No 205
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=57.73 E-value=48 Score=24.09 Aligned_cols=109 Identities=10% Similarity=0.108 Sum_probs=61.1
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-----HHHHHHHHHHHH
Q 023179 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-----PEAGSVFLEAWK 122 (286)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS-----~~av~~~~~~l~ 122 (286)
.+++|||.-... ....+...|++.|+++... .+..+....+..-..+|.|++-- .++.+ +++.+.
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~-~~~~l~ 74 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIA--------LTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQ-TALAIQ 74 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHH-HHHHHH
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEe--------cChHHHHHHHhcCCCCCEEEEeccCCCCCCHHH-HHHHHH
Confidence 468999998765 3567888898898765432 12233444453325789888752 34555 455565
Q ss_pred HcCCCCcEEEEECh-hhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc
Q 023179 123 EAGTPNVRIGVVGA-GTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (286)
Q Consensus 123 ~~~~~~~~i~aVG~-~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~ 172 (286)
+. ..++++++.. .......+.++. |.. ++..+..+.+.|...|.
T Consensus 75 ~~--~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~l~~~i~ 119 (140)
T 3h5i_A 75 QI--SELPVVFLTAHTEPAVVEKIRSV---TAY-GYVMKSATEQVLITIVE 119 (140)
T ss_dssp HH--CCCCEEEEESSSSCCCCGGGGGS---CEE-EEEETTCCHHHHHHHHH
T ss_pred hC--CCCCEEEEECCCCHHHHHHHHhC---CCc-EEEeCCCCHHHHHHHHH
Confidence 54 4556655543 332222222111 543 45666677888876664
No 206
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=57.50 E-value=55 Score=27.67 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=56.3
Q ss_pred CCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEEEEeCh-----HHHHHHH
Q 023179 177 KKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASP-----SAVRSWV 244 (286)
Q Consensus 177 ~~~rvL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~IvftS~-----sav~~~~ 244 (286)
.+.+|++.+... +...+...|+.+|++|..+-. .++. +++.+. ..++|+|.+++. ..++.+.
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~--~vp~----e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i 195 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGR--DVPA----EEVLAAVQKEKPIMLTGTALMTTTMYAFKEVN 195 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEE--ECCS----HHHHHHHHHHCCSEEEEECCCTTTTTHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC--CCCH----HHHHHHHHHcCCCEEEEEeeccCCHHHHHHHH
Confidence 456888876654 345677889999998876655 2222 233332 248999998873 3456666
Q ss_pred HHhccccCCCceEEEeCHHHHH-HHHHcC
Q 023179 245 NLISDTEQWSNSVACIGETTAS-AAKRLG 272 (286)
Q Consensus 245 ~~~~~~~~~~~~iv~IG~~Ta~-~l~~~G 272 (286)
+.+++... ++++++-|..+.. ..++.|
T Consensus 196 ~~l~~~~~-~~~v~vGG~~~~~~~~~~ig 223 (258)
T 2i2x_B 196 DMLLENGI-KIPFACGGGAVNQDFVSQFA 223 (258)
T ss_dssp HHHHTTTC-CCCEEEESTTCCHHHHHTST
T ss_pred HHHHhcCC-CCcEEEECccCCHHHHHHcC
Confidence 66665432 4888888865443 445566
No 207
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}
Probab=57.37 E-value=26 Score=30.38 Aligned_cols=77 Identities=9% Similarity=0.063 Sum_probs=46.1
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeC-----CCchHHHHH---HhcCCCccEEE----EeCHH
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQG-----PDTDRLSSV---LNADTIFDWII----ITSPE 112 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~-----~~~~~l~~~---l~~~~~~d~Iv----FTS~~ 112 (286)
..+.|++||||-... -+..+++.|.+.|++|+.+-.-+..+. .+.+.+.+. +... ..+..+ ++++.
T Consensus 42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~ 120 (317)
T 3oec_A 42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ-GRRIIARQADVRDLA 120 (317)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT-TCCEEEEECCTTCHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc-CCeEEEEECCCCCHH
Confidence 457899999998765 367899999999999876532211100 012233332 2221 122222 36888
Q ss_pred HHHHHHHHHHH
Q 023179 113 AGSVFLEAWKE 123 (286)
Q Consensus 113 av~~~~~~l~~ 123 (286)
+++.+++.+.+
T Consensus 121 ~v~~~~~~~~~ 131 (317)
T 3oec_A 121 SLQAVVDEALA 131 (317)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888876654
No 208
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=57.02 E-value=13 Score=31.13 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=34.4
Q ss_pred CccEEEEeC---------HHHHHHHHHHHHHc--CCCCcEEEEEChhhHHHHHHhhhccCCCCcee
Q 023179 102 IFDWIIITS---------PEAGSVFLEAWKEA--GTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA 156 (286)
Q Consensus 102 ~~d~IvFTS---------~~av~~~~~~l~~~--~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~ 156 (286)
...+||||| .+-++...+.+.+. .-.++++++||.+....+++. |..+.
T Consensus 57 ~~~~IvitSDrGLcG~~Nsni~k~~~~~i~~~~~~g~~~~l~~vG~Kg~~~~~~~------~~~i~ 116 (230)
T 1fs0_G 57 RVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSV------GGNVV 116 (230)
T ss_dssp EEEEEEECCSSSCSTTHHHHHHHHHHHHHHHHHHTTCEEEEEEESHHHHHHHHHH------CCCEE
T ss_pred cEEEEEEeCCccccccccHHHHHHHHHHHHHhhcCCCcEEEEEEeHHHHHHHHhC------CCceE
Confidence 346999999 66666555444332 113568999999999999988 76653
No 209
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=56.95 E-value=9.3 Score=32.58 Aligned_cols=94 Identities=14% Similarity=0.038 Sum_probs=54.9
Q ss_pred CCCeEEEeCCC--CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH-H-------HHHH
Q 023179 49 SNPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-G-------SVFL 118 (286)
Q Consensus 49 ~g~~VLitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a-v-------~~~~ 118 (286)
.+++|++.+.. +.-..+.+.|++.|+++..+......+.++ .+.++|.||++-.-. + ....
T Consensus 2 ~~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~---------~~~~~d~lIl~GGp~~~~d~~~~~~~~~ 72 (250)
T 3m3p_A 2 SLKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPA---------EIRDCSGLAMMGGPMSANDDLPWMPTLL 72 (250)
T ss_dssp CCCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCS---------CGGGSSEEEECCCSSCTTSCCTTHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcC---------ccccCCEEEECCCCCcccccchHHHHHH
Confidence 36788888654 456788899999999988776654432221 245689999974321 1 1112
Q ss_pred HHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceec
Q 023179 119 EAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAF 157 (286)
Q Consensus 119 ~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~ 157 (286)
+.+...-..+++++.|--+-.-..... |-++.-
T Consensus 73 ~~i~~~~~~~~PvlGIC~G~Qll~~~l------GG~V~~ 105 (250)
T 3m3p_A 73 ALIRDAVAQRVPVIGHCLGGQLLAKAM------GGEVTD 105 (250)
T ss_dssp HHHHHHHHHTCCEEEETHHHHHHHHHT------TCCEEE
T ss_pred HHHHHHHHcCCCEEEECHHHHHHHHHh------CCEEEe
Confidence 222111112677776666665555555 766533
No 210
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=56.89 E-value=7.1 Score=33.26 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=35.2
Q ss_pred CccEEEEeCHHHHHHHHHHHHHcC-CCCcEEEEEChhh----HHHHHHhhhccCCCCceeccCC
Q 023179 102 IFDWIIITSPEAGSVFLEAWKEAG-TPNVRIGVVGAGT----ASIFEEVIQSSKCSLDVAFSPS 160 (286)
Q Consensus 102 ~~d~IvFTS~~av~~~~~~l~~~~-~~~~~i~aVG~~T----a~~L~~~~~~~~~G~~~~~~~~ 160 (286)
+.|++||.|||++.---...++.. -.++++++||..- .+.|++. |+--.+++.
T Consensus 64 ~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~kd~l~~~------g~GYIivk~ 121 (283)
T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLKVKDEMEEQ------GLGYILVKP 121 (283)
T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGGGHHHHHHT------TCEEEEETT
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchhhHHHHHhc------CCcEEEEec
Confidence 689999999997643333322221 2477788777655 6778777 887766653
No 211
>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*
Probab=56.70 E-value=51 Score=28.34 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=37.3
Q ss_pred ccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceE------Eee--eCCCchHHHHHHhcCCCccEEEEeC
Q 023179 43 SASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLI------QHA--QGPDTDRLSSVLNADTIFDWIIITS 110 (286)
Q Consensus 43 ~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~------~~~--~~~~~~~l~~~l~~~~~~d~IvFTS 110 (286)
.-+..+.+|+||||-..+ -+..+++.|.+.|.+|.-+--- +.. ...|.+.+.+.+ ...|.||.+.
T Consensus 12 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~---~~~d~vih~A 85 (347)
T 4id9_A 12 SGLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAI---MGVSAVLHLG 85 (347)
T ss_dssp ---------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHH---TTCSEEEECC
T ss_pred CcccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHH---hCCCEEEECC
Confidence 344677899999998865 4678999999999998765221 111 112334555555 4789998754
No 212
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=56.70 E-value=35 Score=29.30 Aligned_cols=73 Identities=11% Similarity=-0.076 Sum_probs=48.2
Q ss_pred cCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCC-ccEE--EEeCHHHHHHHHH
Q 023179 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI-FDWI--IITSPEAGSVFLE 119 (286)
Q Consensus 44 ~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~-~d~I--vFTS~~av~~~~~ 119 (286)
|+..|.||.+|||-... -...+++.|.+.|++|...- .+.+.+++..+.++. .-.+ =+++...++.+++
T Consensus 23 Ms~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~-------r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~ 95 (273)
T 4fgs_A 23 MTQRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITG-------RRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYE 95 (273)
T ss_dssp --CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEE-------SCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHH
T ss_pred hcchhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEE-------CCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHH
Confidence 44789999999997764 46789999999999987532 122445555444321 1111 1478899998887
Q ss_pred HHHH
Q 023179 120 AWKE 123 (286)
Q Consensus 120 ~l~~ 123 (286)
...+
T Consensus 96 ~~~~ 99 (273)
T 4fgs_A 96 KVKA 99 (273)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 213
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=56.67 E-value=80 Score=25.75 Aligned_cols=110 Identities=10% Similarity=0.044 Sum_probs=64.7
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHH
Q 023179 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKE 123 (286)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l~~ 123 (286)
..++|||.-... ....+...|+..|+++... .+.++..+.+.. ..+|.|++- ..++.+ +++.+.+
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~~-~~~dlvllD~~lp~~~g~~-~~~~lr~ 91 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTA--------TNGAQALDRARE-TRPDAVILDVXMPGMDGFG-VLRRLRA 91 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-HCCSEEEEESCCSSSCHHH-HHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEE--------CCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 467999998765 3567888888888765421 122333344422 468888875 234555 4555666
Q ss_pred cCCCCcEEE-EEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 124 AGTPNVRIG-VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 124 ~~~~~~~i~-aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
... .++++ ..+........+.++. |.. ++..+..+.+.|...|..
T Consensus 92 ~~~-~~~ii~lt~~~~~~~~~~~~~~---Ga~-~yl~Kp~~~~~L~~~i~~ 137 (250)
T 3r0j_A 92 DGI-DAPALFLTARDSLQDKIAGLTL---GGD-DYVTKPFSLEEVVARLRV 137 (250)
T ss_dssp TTC-CCCEEEEECSTTHHHHHHHHTS---TTC-EEEESSCCHHHHHHHHHH
T ss_pred cCC-CCCEEEEECCCCHHHHHHHHHc---CCc-EEEeCCCCHHHHHHHHHH
Confidence 543 44544 4454444444444322 543 466677888888777754
No 214
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=56.34 E-value=27 Score=30.18 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=29.3
Q ss_pred ccccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 41 ATSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 41 ~~~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
.++-+.++.||+||||-..+ -+..+++.|.+.|.+|.-+
T Consensus 11 ~~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~ 50 (330)
T 2pzm_A 11 SSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVI 50 (330)
T ss_dssp ---CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEE
T ss_pred ccCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 34556788899999998765 3678899999999888654
No 215
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=56.34 E-value=31 Score=27.67 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=35.4
Q ss_pred HHHHHHhCCCeeEEEEeeeeecCC-C-----C---cHHHHHHcCCCCEEEEeCh-------HHHHHHHHHhcc
Q 023179 193 IEEGLSNRGFEVVRLNTYTTEPVH-H-----V---DQTVLKQALSIPVVAVASP-------SAVRSWVNLISD 249 (286)
Q Consensus 193 L~~~L~~~G~~V~~~~vY~~~~~~-~-----~---~~~~~~~~~~~d~IvftS~-------sav~~~~~~~~~ 249 (286)
+.+.++ .|.+|+.+.+|+. |.- . . ..+..+.+...|.|||.|| ..+++|++.+..
T Consensus 25 ~~~~~~-~~~~v~~~dl~~l-p~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~ 95 (192)
T 3fvw_A 25 AETIIG-DRAQVSYLSYDRV-PFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSR 95 (192)
T ss_dssp HHHHHT-TSSEEEECCCSSC-CCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTS
T ss_pred HHHhcC-CCCEEEEEeCccC-CCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccccCCCHHHHHHHHHhhc
Confidence 444554 5778877777642 210 0 0 1223444578999999987 689999999874
No 216
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=56.01 E-value=27 Score=29.17 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEC
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVG 135 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG 135 (286)
.-+.+.|+++|..+....++......+ .+.+.+.|+....+|+|+.++-..+..+++.+.+.|+ +++.++..+
T Consensus 147 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d 224 (289)
T 3g85_A 147 KGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLNKRQISIPDDIEIVAIG 224 (289)
T ss_dssp HHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEEcCCHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 345667778887654333332221111 1234455544456888888888777777888888776 366677776
No 217
>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Probab=55.80 E-value=51 Score=26.75 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=26.2
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEE
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLE 78 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~ 78 (286)
.+.|++||||-... -+..+++.|.++|++|+.
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~ 36 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVA 36 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence 57799999998765 467899999999998764
No 218
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=55.69 E-value=55 Score=23.57 Aligned_cols=110 Identities=14% Similarity=0.171 Sum_probs=64.7
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHHc
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~l~~~ 124 (286)
.++|||.-... ....+.+.|++.|+++..+ .+.++..+.+.. ..+|.|++-- .++.+ +++.+.+.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~-~~~~l~~~ 75 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMV--------HSAAQALEQVAR-RPYAAMTVDLNLPDQDGVS-LIRALRRD 75 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------CSHHHHHHHHHH-SCCSEEEECSCCSSSCHHH-HHHHHHTS
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEE--------CCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHH-HHHHHHhC
Confidence 57899997765 3567788888888765322 133444445533 5689888742 34555 45556542
Q ss_pred -CCCCcEEEEEChhhHH-HHH-HhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 125 -GTPNVRIGVVGAGTAS-IFE-EVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 125 -~~~~~~i~aVG~~Ta~-~L~-~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
....++++++...... ... +.++. |.. ++..+..+.+.|...+..
T Consensus 76 ~~~~~~~ii~~s~~~~~~~~~~~~~~~---g~~-~~l~kP~~~~~l~~~i~~ 123 (140)
T 3grc_A 76 SRTRDLAIVVVSANAREGELEFNSQPL---AVS-TWLEKPIDENLLILSLHR 123 (140)
T ss_dssp GGGTTCEEEEECTTHHHHHHHHCCTTT---CCC-EEECSSCCHHHHHHHHHH
T ss_pred cccCCCCEEEEecCCChHHHHHHhhhc---CCC-EEEeCCCCHHHHHHHHHH
Confidence 2356777777665433 333 22211 543 456666788888777754
No 219
>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*
Probab=55.56 E-value=9.6 Score=32.11 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=28.4
Q ss_pred CCCCCCeEEEeCC-----------------CCchHHHHHHHHhCCCcEEEe
Q 023179 46 ASNSNPKVVVTRE-----------------RGKNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 46 ~~l~g~~VLitR~-----------------~~~~~~l~~~L~~~G~~v~~~ 79 (286)
..+.|++||||-. ...+..+++.|.++|++|..+
T Consensus 4 ~~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~ 54 (226)
T 1u7z_A 4 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLV 54 (226)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEE
Confidence 4678999999987 346789999999999999764
No 220
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=55.45 E-value=23 Score=27.61 Aligned_cols=81 Identities=15% Similarity=0.139 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHH-----HHHHHHHhccccCCCceEEEeC-----
Q 023179 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA-----VRSWVNLISDTEQWSNSVACIG----- 261 (286)
Q Consensus 192 ~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sa-----v~~~~~~~~~~~~~~~~iv~IG----- 261 (286)
.+.+.|++.|++|..+.+... . ....+...+..+|.|+|-||.- .+.|++.+......+.+++++|
T Consensus 24 ~ia~~l~~~g~~v~~~~~~~~---~-~~~~~~~~~~~~d~ii~Gspty~g~~p~~~~l~~l~~~~~~~k~va~fgs~g~~ 99 (159)
T 3fni_A 24 AIINGITKTGVGVDVVDLGAA---V-DLQELRELVGRCTGLVIGMSPAASAASIQGALSTILGSVNEKQAVGIFETGGGD 99 (159)
T ss_dssp HHHHHHHHTTCEEEEEESSSC---C-CHHHHHHHHHTEEEEEEECCBTTSHHHHHHHHHHHHHHCCTTSEEEEECCSSSC
T ss_pred HHHHHHHHCCCeEEEEECcCc---C-CHHHHHHHHHhCCEEEEEcCcCCCCccHHHHHHHHHhhcccCCEEEEEEcCCCC
Confidence 456777788876654443221 0 2233444456899999999731 1455555433222345555554
Q ss_pred ----HHHHHHHHHcCCCeE
Q 023179 262 ----ETTASAAKRLGLKNV 276 (286)
Q Consensus 262 ----~~Ta~~l~~~G~~~v 276 (286)
....+.+++.|++.+
T Consensus 100 ~~a~~~l~~~l~~~G~~~v 118 (159)
T 3fni_A 100 DEPIDPLLSKFRNLGLTTA 118 (159)
T ss_dssp BCCHHHHHHHHHHTTCEES
T ss_pred cHHHHHHHHHHHHCCCEEe
Confidence 345667788888753
No 221
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=55.36 E-value=53 Score=28.59 Aligned_cols=138 Identities=13% Similarity=0.016 Sum_probs=76.4
Q ss_pred CCccEEEE-eCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCce--eccCCC-CCHHHHHHhcccCCC
Q 023179 101 TIFDWIII-TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV--AFSPSK-ATGKILASELPKNGK 176 (286)
Q Consensus 101 ~~~d~IvF-TS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~--~~~~~~-~~~e~L~~~L~~~~~ 176 (286)
...+.||= .++.........+.+. +++++..+..+.. +... ....- .+.+.. ..+..+++.+.+.
T Consensus 72 ~~v~~iiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~~~-~~~~-----~~~~~~f~~~~~~~~~~~~~~~~l~~~-- 140 (379)
T 3n0w_A 72 DGVDAIFDVVNSGTALAINNLVKDK---KKLAFITAAAADQ-IGGT-----ECNGYGIGFLYNFTSIVKTVVQAQLAK-- 140 (379)
T ss_dssp SCCCEEEECCCHHHHHHHHHHHHHH---TCEEEECSCCCTT-TTTT-----TCCSSEEECSCCHHHHHHHHHHHHHHT--
T ss_pred CCceEEEcCCCcHHHHHHHHHHHHc---CceEEEcCCCchh-hhcc-----cCCCcEEEEeCChHHHHHHHHHHHHHc--
Confidence 57888883 4444444455555543 5677776654432 2221 01111 122221 1234566666554
Q ss_pred CCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeCh-HHHHHHHHHhc
Q 023179 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSWVNLIS 248 (286)
Q Consensus 177 ~~~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS~-sav~~~~~~~~ 248 (286)
..+++.++..+.. .+.+.+.|++.|.+|.....|.... .+ ....+..+ ...|+|++.+. ..+..++..+.
T Consensus 141 g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~-~d-~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~ 218 (379)
T 3n0w_A 141 GYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFPFET-QD-FSSYLLQAKASGAQLIVSTSGGAANINIMKQAR 218 (379)
T ss_dssp TCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTC-CC-CHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHH
T ss_pred CCcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCCCCC-CC-HHHHHHHHHHCCCCEEEEecccchHHHHHHHHH
Confidence 4478888865543 4567788999999887666665332 22 22233332 47898887665 66667777776
Q ss_pred ccc
Q 023179 249 DTE 251 (286)
Q Consensus 249 ~~~ 251 (286)
+.+
T Consensus 219 ~~g 221 (379)
T 3n0w_A 219 EFG 221 (379)
T ss_dssp HTT
T ss_pred HcC
Confidence 543
No 222
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=55.24 E-value=13 Score=31.14 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=44.0
Q ss_pred CEEEEEcCCCC------------hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeCh-------HH
Q 023179 179 CTVLYPASAKA------------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SA 239 (286)
Q Consensus 179 ~rvL~~~g~~~------------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~-------sa 239 (286)
.+||++-|... .+.+.+.|++.|.+|+.+.+++ ..+.++..+.+...|.|||.+| ..
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~----~~Dv~~~~~~l~~aD~iv~~~P~y~~~~p~~ 101 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQ----GYDIESEIENYLWADTIIYQMPAWWMGEPWI 101 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGG----CCCHHHHHHHHHHCSEEEEEEECBTTBCCHH
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCC----ccCHHHHHHHHHhCCEEEEECChHhccCCHH
Confidence 46777765542 1245567778899999888875 2233334445678999998875 67
Q ss_pred HHHHHHHh
Q 023179 240 VRSWVNLI 247 (286)
Q Consensus 240 v~~~~~~~ 247 (286)
++.|++.+
T Consensus 102 lK~~iD~v 109 (218)
T 3rpe_A 102 LKKYIDEV 109 (218)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888865
No 223
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=55.20 E-value=59 Score=23.80 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=62.0
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAW 121 (286)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l 121 (286)
...+++|||.-.... ...+...|++.|+.+..+ .+.++..+.+. ...+|.|+.- ..++.+ +++.+
T Consensus 11 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~-~~~~dlvl~D~~mp~~~g~~-~~~~l 80 (143)
T 3m6m_D 11 RVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCV--------NGAEQVLDAMA-EEDYDAVIVDLHMPGMNGLD-MLKQL 80 (143)
T ss_dssp ----CEEEEECSSHHHHHHHHHHHHC--CEEEEE--------SSHHHHHHHHH-HSCCSEEEEESCCSSSCHHH-HHHHH
T ss_pred ccccceEEEEeCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHh-cCCCCEEEEeCCCCCCCHHH-HHHHH
Confidence 455789999977653 456777888888765421 12233444452 3578988874 334555 34445
Q ss_pred HH---cCCCCcEEEE-EChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC
Q 023179 122 KE---AGTPNVRIGV-VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (286)
Q Consensus 122 ~~---~~~~~~~i~a-VG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~ 175 (286)
++ .+...+++++ .+....+...+..+. |.. ++..+..+.+.|.+.+....
T Consensus 81 r~~~~~~~~~~pii~~s~~~~~~~~~~~~~~---Ga~-~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 81 RVMQASGMRYTPVVVLSADVTPEAIRACEQA---GAR-AFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp HHHHHTTCCCCCEEEEESCCCHHHHHHHHHT---TCS-EEEESSCCHHHHHHHHHHHC
T ss_pred HhchhccCCCCeEEEEeCCCCHHHHHHHHHc---Chh-heeeCCCCHHHHHHHHHHHH
Confidence 42 2234455554 444444443333211 654 46667788899988876543
No 224
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=55.15 E-value=10 Score=34.08 Aligned_cols=200 Identities=10% Similarity=-0.002 Sum_probs=103.5
Q ss_pred CeEEEeCCCCchHHHH-HHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HH-HHHHHHHcCCC
Q 023179 51 PKVVVTRERGKNGKLI-KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SV-FLEAWKEAGTP 127 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~-~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~~-~~~~l~~~~~~ 127 (286)
|+|+++...+....+. +.+++.|+++...+-. .. + +.++.+.++|.|+..+..-+ +. +++.+...
T Consensus 2 mki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~--~---~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~--- 69 (343)
T 2yq5_A 2 TKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQA----LT--S---ATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEY--- 69 (343)
T ss_dssp CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSC----CS--T---TGGGGGTTCSEEEECCSSCBCCHHHHHHHHHT---
T ss_pred ceEEEEecCcccHHHHHHHHHhCCeEEEECCCC----CC--H---HHHHHhcCCcEEEEcCCCCcCHHHHHHhcccc---
Confidence 7899988665555544 4455678888766531 11 1 12334678999988653222 22 55555432
Q ss_pred CcEEE-EEChhhH----HHHHHhhhccCCCCceeccCCCCCHHHHHHhc------------------c-c----C-----
Q 023179 128 NVRIG-VVGAGTA----SIFEEVIQSSKCSLDVAFSPSKATGKILASEL------------------P-K----N----- 174 (286)
Q Consensus 128 ~~~i~-aVG~~Ta----~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L------------------~-~----~----- 174 (286)
++|++ ..|.++- +++++. |+.+..+|. .+++.+++.- . + +
T Consensus 70 ~Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~ 142 (343)
T 2yq5_A 70 GVKCIGLRIVGFNTINFDWTKKY------NLLVTNVPV-YSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLI 142 (343)
T ss_dssp TCCEEEESSSCCTTBCSSTTCC--------CEEECCSC-SCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGC
T ss_pred CceEEEECceeecccchhHHHhC------CEEEEECCC-CCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCC
Confidence 23332 2333322 233444 776655543 3333332211 0 0 1
Q ss_pred --CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCc--HHHHHHcCCCCEEEEeChHH--H-----HHH
Q 023179 175 --GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQALSIPVVAVASPSA--V-----RSW 243 (286)
Q Consensus 175 --~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~--~~~~~~~~~~d~IvftS~sa--v-----~~~ 243 (286)
...|++|.++.-..-...+...|+..|++|.-+..|.....+... ....+.+...|+|++.-|.. . +.+
T Consensus 143 ~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~ 222 (343)
T 2yq5_A 143 SNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQ 222 (343)
T ss_dssp BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHH
T ss_pred ccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHH
Confidence 115778999876666667899999999877655544332111100 01111134788988888742 1 223
Q ss_pred HHHhccccCCCceEEEeC-------HHHHHHHHHcCC
Q 023179 244 VNLISDTEQWSNSVACIG-------ETTASAAKRLGL 273 (286)
Q Consensus 244 ~~~~~~~~~~~~~iv~IG-------~~Ta~~l~~~G~ 273 (286)
+..++. +..++=+| ....++|++-++
T Consensus 223 l~~mk~----gailIN~aRg~~vd~~aL~~aL~~g~i 255 (343)
T 2yq5_A 223 LKEMKK----SAYLINCARGELVDTGALIKALQDGEI 255 (343)
T ss_dssp HHHSCT----TCEEEECSCGGGBCHHHHHHHHHHTSS
T ss_pred HhhCCC----CcEEEECCCChhhhHHHHHHHHHcCCC
Confidence 444443 34444444 455666666443
No 225
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=54.84 E-value=57 Score=23.52 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=62.7
Q ss_pred CCeEEEeCCCC-chHHHHHHHHh-CCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe-----CHHHHHHHHHHHH
Q 023179 50 NPKVVVTRERG-KNGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-----SPEAGSVFLEAWK 122 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~-~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT-----S~~av~~~~~~l~ 122 (286)
+++|||.-... ....+...|++ .|+++..+. +.++..+.+.....+|.|++- ..++.+ +++.+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~--------~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~-~~~~l~ 74 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVE--------NLKKFYSIFKDLDSITLIIMDIAFPVEKEGLE-VLSAIR 74 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEEC--------SHHHHHTTTTTCCCCSEEEECSCSSSHHHHHH-HHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEEC--------CHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHH-HHHHHH
Confidence 57899987765 34677888888 787655221 223333333221568888874 234554 456666
Q ss_pred Hc-CCCCcEEEE-EChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC
Q 023179 123 EA-GTPNVRIGV-VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (286)
Q Consensus 123 ~~-~~~~~~i~a-VG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~ 174 (286)
+. ....+++++ .+....+...+.++. |.. ++..+..+.+.|...+...
T Consensus 75 ~~~~~~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~l~~~i~~~ 124 (140)
T 3lua_A 75 NNSRTANTPVIIATKSDNPGYRHAALKF---KVS-DYILKPYPTKRLENSVRSV 124 (140)
T ss_dssp HSGGGTTCCEEEEESCCCHHHHHHHHHS---CCS-EEEESSCCTTHHHHHHHHH
T ss_pred hCcccCCCCEEEEeCCCCHHHHHHHHHc---CCC-EEEECCCCHHHHHHHHHHH
Confidence 52 124555554 444444444433222 654 4556667778887777543
No 226
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=54.64 E-value=40 Score=27.59 Aligned_cols=75 Identities=11% Similarity=0.055 Sum_probs=46.2
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC--CccEEEE----eCHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT--IFDWIII----TSPEAGSVFL 118 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~--~~d~IvF----TS~~av~~~~ 118 (286)
..+.|++||||-.... +..+++.|.++|++|+.+- ... ...+.+.+.+.... ....+.+ ++...++.++
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~---r~~-~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~ 85 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLG---RTE-ASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELA 85 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE---SCH-HHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe---cCH-HHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHH
Confidence 4578999999987653 6789999999999876431 110 11223333343322 2222222 7888888888
Q ss_pred HHHHHc
Q 023179 119 EAWKEA 124 (286)
Q Consensus 119 ~~l~~~ 124 (286)
+.+.+.
T Consensus 86 ~~~~~~ 91 (247)
T 3i1j_A 86 ARVEHE 91 (247)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877553
No 227
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=54.05 E-value=49 Score=27.09 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=27.4
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEE
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (286)
..+.+++||||-.... +..+++.|.++|++|+.
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~ 43 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVII 43 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 5677999999987754 67899999999998764
No 228
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=53.70 E-value=41 Score=32.97 Aligned_cols=111 Identities=18% Similarity=0.158 Sum_probs=69.2
Q ss_pred CCeEEEeCCCCchHHHH---------HHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH--------H
Q 023179 50 NPKVVVTRERGKNGKLI---------KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP--------E 112 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~---------~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~--------~ 112 (286)
..+||+....++...+- ..|+..|++|+.+..-.. .+++.+.. ...+.|.|.+.+- .
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVP-----pEeIVeAA-~EedADVVGLSsLLTt~dihL~ 675 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVP-----VEKLVDAA-IELKADAILASTIISHDDIHYK 675 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBC-----HHHHHHHH-HHTTCSEEEEECCCCGGGHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHH-HHcCCCEEEEeccccCchhhHH
Confidence 45777776655433333 358999999998876522 13444444 2357899988853 3
Q ss_pred HHHHHHHHHHHcCCC-CcEEEEEChh-hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 113 AGSVFLEAWKEAGTP-NVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 113 av~~~~~~l~~~~~~-~~~i~aVG~~-Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
.+..+.+.+++.+.. ++++++=|.. +.+..++. |....+ +....+..+++.|..
T Consensus 676 ~MkevIelLrE~GlrDkIkVIVGGa~~tqd~AkeI------GADa~f-~DATeAVeVA~~Ll~ 731 (763)
T 3kp1_A 676 NMKRIHELAVEKGIRDKIMIGCGGTQVTPEVAVKQ------GVDAGF-GRGSKGIHVATFLVK 731 (763)
T ss_dssp HHHHHHHHHHHTTCTTTSEEEEECTTCCHHHHHTT------TCSEEE-CTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHc------CCcEEE-CCcchHHHHHHHHHH
Confidence 445667888888875 5788887764 44444444 877544 444556666666644
No 229
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=53.57 E-value=1.4e+02 Score=27.58 Aligned_cols=36 Identities=14% Similarity=0.046 Sum_probs=30.8
Q ss_pred ccCCCCCCCeEEEeCCC-CchHHHHHHHHhCCCcEEE
Q 023179 43 SASASNSNPKVVVTRER-GKNGKLIKALAKHRIDCLE 78 (286)
Q Consensus 43 ~~~~~l~g~~VLitR~~-~~~~~l~~~L~~~G~~v~~ 78 (286)
++++||.|.||..+-.- .+...|.+.|.+.|++|..
T Consensus 36 ~~~~pl~g~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~ 72 (436)
T 3h9u_A 36 GPSKPLKGAKIAGCLHMTMQTAVLIETLVELGAEVRW 72 (436)
T ss_dssp TTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEE
T ss_pred hccCCCCCCEEEEEeccHHHHHHHHHHHHHcCCEEEE
Confidence 45699999999998775 4778999999999999975
No 230
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=53.55 E-value=64 Score=23.72 Aligned_cols=113 Identities=7% Similarity=0.095 Sum_probs=61.9
Q ss_pred CCCeEEEeCCCCc-hHHHHHHHHh-CCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHH
Q 023179 49 SNPKVVVTRERGK-NGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWK 122 (286)
Q Consensus 49 ~g~~VLitR~~~~-~~~l~~~L~~-~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l~ 122 (286)
.+++|||.-.... ...+...|++ .|+.+.. . ..+..+....+ ....+|.|++- ..++.+ +++.+.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~-----~--~~~~~~a~~~l-~~~~~dlii~D~~l~~~~g~~-~~~~l~ 74 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVA-----E--AADAGEAYRLY-RETTPDIVVMDLTLPGPGGIE-ATRHIR 74 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEE-----E--ESSHHHHHHHH-HTTCCSEEEECSCCSSSCHHH-HHHHHH
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEE-----E--eCCHHHHHHHH-hcCCCCEEEEecCCCCCCHHH-HHHHHH
Confidence 3578998877653 4566677766 5655431 1 12234444455 33568988863 234554 455566
Q ss_pred HcCCCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC
Q 023179 123 EAGTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (286)
Q Consensus 123 ~~~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~ 175 (286)
+.. ...+++++ +........+.++. |.. ++..+..+.+.|...|....
T Consensus 75 ~~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~kp~~~~~L~~~i~~~~ 123 (153)
T 3cz5_A 75 QWD-GAARILIFTMHQGSAFALKAFEA---GAS-GYVTKSSDPAELVQAIEAIL 123 (153)
T ss_dssp HHC-TTCCEEEEESCCSHHHHHHHHHT---TCS-EEEETTSCTTHHHHHHHHHT
T ss_pred HhC-CCCeEEEEECCCCHHHHHHHHHC---CCc-EEEecCCCHHHHHHHHHHHH
Confidence 543 34555544 44443443333222 554 35556667788877776544
No 231
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=53.55 E-value=8.3 Score=30.37 Aligned_cols=61 Identities=18% Similarity=0.225 Sum_probs=30.8
Q ss_pred CeEEEeCCC----CchHHHHHHHHhCCCcEEEeceEEeeeCC-------------CchHHHHHHhcCCCccEEEEeCHH
Q 023179 51 PKVVVTRER----GKNGKLIKALAKHRIDCLELPLIQHAQGP-------------DTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 51 ~~VLitR~~----~~~~~l~~~L~~~G~~v~~~P~~~~~~~~-------------~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
|+||+.-.. +....+++.+.+ |+++..+.+......+ ..+.+....+.+..+|.|||.||.
T Consensus 4 Mkilii~~S~r~~g~t~~la~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~~P~ 81 (184)
T 1rli_A 4 MKIAVINGGTRSGGNTDVLAEKAVQ-GFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFATPI 81 (184)
T ss_dssp -CEEEEESSCSSCCHHHHHHHHHHT-TTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEEEC
T ss_pred cEEEEEECCCCCCccHHHHHHHHHc-CCeEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEEEEEeCc
Confidence 466665333 456777777754 6666555444332110 011233334445778999999863
No 232
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=53.49 E-value=46 Score=27.34 Aligned_cols=33 Identities=9% Similarity=0.079 Sum_probs=26.5
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEe
Q 023179 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (286)
.+.|++||||-.... ...+++.|.++|++|..+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 36 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIAT 36 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 367899999987653 678999999999987643
No 233
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=52.73 E-value=40 Score=24.39 Aligned_cols=112 Identities=7% Similarity=0.038 Sum_probs=61.9
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAW 121 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~l 121 (286)
+..+++|||.-... ....+...|+..|+++..+ .+.++..+.+. ...+|.|++-- .++.+ +++.+
T Consensus 4 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~-~~~~dlii~d~~l~~~~g~~-~~~~l 73 (142)
T 3cg4_A 4 AEHKGDVMIVDDDAHVRIAVKTILSDAGFHIISA--------DSGGQCIDLLK-KGFSGVVLLDIMMPGMDGWD-TIRAI 73 (142)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHH-TCCCEEEEEESCCSSSCHHH-HHHHH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEe--------CCHHHHHHHHH-hcCCCEEEEeCCCCCCCHHH-HHHHH
Confidence 44578899987765 3567888888888754321 12344445553 35688888742 24554 55666
Q ss_pred HHc-CCCCcEEEEEChhh-HHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc
Q 023179 122 KEA-GTPNVRIGVVGAGT-ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (286)
Q Consensus 122 ~~~-~~~~~~i~aVG~~T-a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~ 172 (286)
.+. ....++++++.... .....+.++. |.. ++..+..+.+.|...+.
T Consensus 74 ~~~~~~~~~pii~~s~~~~~~~~~~~~~~---g~~-~~l~kp~~~~~l~~~i~ 122 (142)
T 3cg4_A 74 LDNSLEQGIAIVMLTAKNAPDAKMIGLQE---YVV-DYITKPFDNEDLIEKTT 122 (142)
T ss_dssp HHTTCCTTEEEEEEECTTCCCCSSTTGGG---GEE-EEEESSCCHHHHHHHHH
T ss_pred HhhcccCCCCEEEEECCCCHHHHHHHHhc---Ccc-EEEeCCCCHHHHHHHHH
Confidence 652 23567777665432 2211111111 443 45556667777776664
No 234
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}
Probab=52.26 E-value=1.1e+02 Score=27.00 Aligned_cols=171 Identities=12% Similarity=0.099 Sum_probs=0.0
Q ss_pred CCCCCeEEEeCCCCchHHHHHHH-HhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC
Q 023179 47 SNSNPKVVVTRERGKNGKLIKAL-AKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (286)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L-~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~ 125 (286)
++.+++||++.+. .+.+.+.| ++...+ +++....+.+++.+.+ .+.|.++-.++ +...+.+..
T Consensus 2 ~~~~mkili~~~~--~~~~~~~L~~~~~p~------~~~~~~~~~~~~~~~~---~~ad~li~~~~-----~~~~~l~~~ 65 (324)
T 3hg7_A 2 SLSQRTLLLLSQD--NAHYERLLKAAHLPH------LRILRADNQSDAEKLI---GEAHILMAEPA-----RAKPLLAKA 65 (324)
T ss_dssp --CCEEEEEESTT--HHHHHHHHHHSCCTT------EEEEECSSHHHHHHHG---GGCSEEEECHH-----HHGGGGGGC
T ss_pred CccccEEEEecCC--CHHHHHHHhhccCCC------eEEEeCCChhHHHHHh---CCCEEEEECCC-----CCHHHHhhC
Q ss_pred CCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC--------------------------CCCCC
Q 023179 126 TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN--------------------------GKKKC 179 (286)
Q Consensus 126 ~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~--------------------------~~~~~ 179 (286)
..-.-|...|.++-....+.+.. |+.+...| +.+++.+++..... ...|+
T Consensus 66 ~~Lk~I~~~~~G~d~id~~~~~~---gI~v~n~~-g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~ 141 (324)
T 3hg7_A 66 NKLSWFQSTYAGVDVLLDARCRR---DYQLTNVR-GIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKGR 141 (324)
T ss_dssp TTCCEEEESSSCCGGGSCTTSCC---SSEEECCC-SCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTC
T ss_pred CCceEEEECCCCCCccChHHHhC---CEEEEECC-CcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCcccccc
Q ss_pred EEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCC----CCcHHHHHHcCCCCEEEEeCh
Q 023179 180 TVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH----HVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 180 rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~----~~~~~~~~~~~~~d~IvftS~ 237 (286)
++.+++-..-...+...|+..|++|.-+..+...... .....+.+.+...|+|++.-|
T Consensus 142 tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lP 203 (324)
T 3hg7_A 142 TLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLP 203 (324)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCC
T ss_pred eEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCC
No 235
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=52.19 E-value=70 Score=23.76 Aligned_cols=112 Identities=10% Similarity=0.110 Sum_probs=63.2
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEEEeC----HHHHHHHHHHHHH
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWIIITS----PEAGSVFLEAWKE 123 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~-~~d~IvFTS----~~av~~~~~~l~~ 123 (286)
+++|||.-... ....+.+.|++.|+++.. .. .+.++..+.+.... .+|.|++-- .++.+ +++.+.+
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~-----~~--~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~-~~~~lr~ 107 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIID-----TA--ADGEEAVIKYKNHYPNIDIVTLXITMPKMDGIT-CLSNIME 107 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEE-----EE--SSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHH-HHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEE-----EE--CCHHHHHHHHHhcCCCCCEEEEeccCCCccHHH-HHHHHHh
Confidence 46899998765 356788888888876631 11 12233444443321 578777742 24554 4555665
Q ss_pred cCCCCcEEEE-EChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC
Q 023179 124 AGTPNVRIGV-VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (286)
Q Consensus 124 ~~~~~~~i~a-VG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~ 174 (286)
.. ..+++++ .+....+...+.++. |.. ++..+..+.+.|...|...
T Consensus 108 ~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~l~~~i~~~ 154 (157)
T 3hzh_A 108 FD-KNARVIMISALGKEQLVKDCLIK---GAK-TFIVKPLDRAKVLQRVMSV 154 (157)
T ss_dssp HC-TTCCEEEEESCCCHHHHHHHHHT---TCS-EEEESSCCHHHHHHHHHHT
T ss_pred hC-CCCcEEEEeccCcHHHHHHHHHc---CCC-EEEeCCCCHHHHHHHHHHH
Confidence 54 3455544 444444444433222 654 4566677888887777543
No 236
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=52.16 E-value=41 Score=24.24 Aligned_cols=111 Identities=14% Similarity=0.021 Sum_probs=62.6
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCC-CcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHH
Q 023179 49 SNPKVVVTRERG-KNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWK 122 (286)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G-~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~l~ 122 (286)
..++|||.-... ....+...|++.| +++.... +.++..+.+ ....+|.|++-. .++.+ +++.+.
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~--------~~~~a~~~l-~~~~~dlvi~D~~l~~~~g~~-~~~~l~ 82 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSE--------TDDFLKGPP-ADTRPGIVILDLGGGDLLGKP-GIVEAR 82 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEEC--------GGGGGGCCC-TTCCCSEEEEEEETTGGGGST-THHHHH
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEec--------cHHHHHHHH-hccCCCEEEEeCCCCCchHHH-HHHHHH
Confidence 356899998765 3567888888888 6554322 112111222 235688887742 23444 455565
Q ss_pred HcCCCCcEEE-EEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC
Q 023179 123 EAGTPNVRIG-VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (286)
Q Consensus 123 ~~~~~~~~i~-aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~ 174 (286)
+... .++++ ..+....+...+.++. |.. ++..+..+.+.|...+...
T Consensus 83 ~~~~-~~~ii~~s~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~L~~~i~~~ 130 (135)
T 3snk_A 83 ALWA-TVPLIAVSDELTSEQTRVLVRM---NAS-DWLHKPLDGKELLNAVTFH 130 (135)
T ss_dssp GGGT-TCCEEEEESCCCHHHHHHHHHT---TCS-EEEESSCCHHHHHHHHHHT
T ss_pred hhCC-CCcEEEEeCCCCHHHHHHHHHc---CcH-hhccCCCCHHHHHHHHHHH
Confidence 5443 45554 4454444444443222 554 4566777888888777654
No 237
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=52.07 E-value=16 Score=28.67 Aligned_cols=28 Identities=14% Similarity=0.447 Sum_probs=21.8
Q ss_pred HHHHHcCCCCEEEEeCh-------HHHHHHHHHhc
Q 023179 221 TVLKQALSIPVVAVASP-------SAVRSWVNLIS 248 (286)
Q Consensus 221 ~~~~~~~~~d~IvftS~-------sav~~~~~~~~ 248 (286)
...+.+...|.|+|.|| ..++.|++.+.
T Consensus 64 ~~~~~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~ 98 (184)
T 1rli_A 64 SIIERILQCHILIFATPIYWFGMSGTLKLFIDRWS 98 (184)
T ss_dssp HHHHHHHTCSEEEEEEECBTTBCCHHHHHHHHTHH
T ss_pred HHHHHHHhCCEEEEEeCccccCCcHHHHHHHHHhH
Confidence 34445679999999994 78999998763
No 238
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=52.00 E-value=53 Score=32.72 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=60.6
Q ss_pred CEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeChH-----HHHHHHHH
Q 023179 179 CTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPS-----AVRSWVNL 246 (286)
Q Consensus 179 ~rvL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS~s-----av~~~~~~ 246 (286)
.+|++.+-.. +...+...|+..|++|..+.+ ...+++..+.. .+.|+|++.|.. .+..+++.
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~------~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~ 678 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPL------FQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKE 678 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCT------TCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHH
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCC------CCCHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHHH
Confidence 4666654322 244667889999998854322 22334444432 689999998733 45555666
Q ss_pred hccccCCCceEEEeC--HHH-HHHHHHcCCCeEEeCCC
Q 023179 247 ISDTEQWSNSVACIG--ETT-ASAAKRLGLKNVYYPTH 281 (286)
Q Consensus 247 ~~~~~~~~~~iv~IG--~~T-a~~l~~~G~~~v~~~~~ 281 (286)
+++.+..++++++=| |.. .+.+++.|...++.|..
T Consensus 679 Lr~~G~~dv~VivGG~~P~~d~~~l~~~GaD~~f~pgt 716 (762)
T 2xij_A 679 LNSLGRPDILVMCGGVIPPQDYEFLFEVGVSNVFGPGT 716 (762)
T ss_dssp HHHTTCTTSEEEEEESCCGGGHHHHHHHTCCEEECTTC
T ss_pred HHhcCCCCCEEEEeCCCCcccHHHHHhCCCCEEeCCCC
Confidence 665443356777765 443 67789999988766543
No 239
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=51.96 E-value=27 Score=29.07 Aligned_cols=51 Identities=14% Similarity=0.101 Sum_probs=36.4
Q ss_pred CeEEEeCCCC--chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC
Q 023179 51 PKVVVTRERG--KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS 110 (286)
Q Consensus 51 ~~VLitR~~~--~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS 110 (286)
|+|++.+... .-..+...|++.|+++..+.++.....++ .+.++|.||++-
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~---------~~~~~d~lii~G 53 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPK---------DIDDFDMLILMG 53 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCS---------CGGGCSEEEECC
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCC---------CccccCEEEECC
Confidence 4677776543 45688899999999998887776554332 245789999985
No 240
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=51.95 E-value=27 Score=28.64 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=35.1
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 023179 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
..+++|+|..-...-....+.|++.|+++..++. . + .+..+|.||++-..
T Consensus 21 ~~~~~I~il~~~~~~~~~~~~l~~~G~~~~~~~~------~--~-------~l~~~Dglil~GG~ 70 (219)
T 1q7r_A 21 QSNMKIGVLGLQGAVREHVRAIEACGAEAVIVKK------S--E-------QLEGLDGLVLPGGE 70 (219)
T ss_dssp CCCCEEEEESCGGGCHHHHHHHHHTTCEEEEECS------G--G-------GGTTCSEEEECCCC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHCCCEEEEECC------H--H-------HHhhCCEEEECCCC
Confidence 4468899996544334567889999998887663 1 1 23579999999754
No 241
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=51.92 E-value=17 Score=34.12 Aligned_cols=194 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHH-HHcCCCCcEEEEEChh-
Q 023179 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAW-KEAGTPNVRIGVVGAG- 137 (286)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l-~~~~~~~~~i~aVG~~- 137 (286)
.+..++.+.|++.|+++.....-.... +.+.+....+.-+...+.......+.+ ++.+.+-+..--+|-.
T Consensus 216 gd~~eik~lL~~~Gi~v~~~~~gg~~~--------~el~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~p~Gi~~ 287 (483)
T 3pdi_A 216 GEFWHVLPLLDELGLRVLCTLAGDARY--------REVQTMHRAEVNMMVCSKAMLNVARKLQETYGTPWFEGSFYGITD 287 (483)
T ss_dssp TGGGGTHHHHHHHTEEEEEEETSSBCH--------HHHTTGGGCSEEEEESCCTTHHHHHHHHHHHCCCEEEECSSSHHH
T ss_pred hHHHHHHHHHHHCCCcEEEECCCcCCH--------HHHHhhhcCCEEEEEchhhHHHHHHHHHHHhCCCEeecCCCCHHH
Q ss_pred hHHHHHHhhhccCCCCc-------eeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEee
Q 023179 138 TASIFEEVIQSSKCSLD-------VAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTY 210 (286)
Q Consensus 138 Ta~~L~~~~~~~~~G~~-------~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY 210 (286)
|.+.|++..+.- |.. ..+..+.......+....... .|+|+++..+....-.+...|.+.|++|..+-++
T Consensus 288 T~~~L~~ia~~~--g~~~i~~~~e~~i~~er~~~~~al~~~~~~l-~GKrv~i~~~~~~~~~l~~~L~ElGmevv~~gt~ 364 (483)
T 3pdi_A 288 TSQALRDFARLL--DDPDLTARTEALIAREEAKVRAALEPWRARL-EGKRVLLYTGGVKSWSVVSALQDLGMKVVATGTK 364 (483)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCEEEEECSSSCHHHHHHHHHHHTCEEEEECBS
T ss_pred HHHHHHHHHHHh--CCcchhhhHHHHHHHHHHHHHHHHHHHHHHh-cCCEEEEECCCchHHHHHHHHHHCCCEEEEEecC
Q ss_pred eeecCCCCcHHHHHHcCCCCEEEEeC--hHHHHHHHHHhccccCCCceEEEeCHHHHHHHHHcCC
Q 023179 211 TTEPVHHVDQTVLKQALSIPVVAVAS--PSAVRSWVNLISDTEQWSNSVACIGETTASAAKRLGL 273 (286)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~d~IvftS--~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~~l~~~G~ 273 (286)
.. .....+.+..+-..+.+++.. ...++.++...+ .-++.-|......+++.|+
T Consensus 365 ~~---~~~d~~~~~~~l~~~~~i~~d~d~~el~~~i~~~~------pDL~ig~~~~~~~a~k~gI 420 (483)
T 3pdi_A 365 KS---TEEDKARIRELMGDDVKMLDEGNARVLLKTVDEYQ------ADILIAGGRNMYTALKGRV 420 (483)
T ss_dssp SS---CHHHHHHHHHHSCSSCCBCCSCSHHHHHHHHHHTT------CSEEECCGGGHHHHHHTTC
T ss_pred CC---CHHHHHHHHHhcCCCCEEEeCCCHHHHHHHHHhcC------CCEEEECCchhHHHHHcCC
No 242
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=51.69 E-value=39 Score=26.14 Aligned_cols=79 Identities=15% Similarity=0.227 Sum_probs=38.4
Q ss_pred HHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHH---H--HHHHHHhccccCCCceEEEeC-----
Q 023179 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSA---V--RSWVNLISDTEQWSNSVACIG----- 261 (286)
Q Consensus 192 ~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sa---v--~~~~~~~~~~~~~~~~iv~IG----- 261 (286)
.+.+.|.+.|++|..+.+- ......+...+..+|.|+|-||.- + +.|++.+......+.+++++|
T Consensus 20 ~ia~~l~~~g~~v~~~~~~-----~~~~~~~~~~~~~~d~ii~Gspty~g~~p~~~fl~~l~~~~l~gk~v~~fgs~g~~ 94 (161)
T 3hly_A 20 AIGRGLVKTGVAVEMVDLR-----AVDPQELIEAVSSARGIVLGTPPSQPSEAVATALSTIFAAAHNKQAIGLFDSYGGD 94 (161)
T ss_dssp HHHHHHHHTTCCEEEEETT-----TCCHHHHHHHHHHCSEEEEECCBSSCCHHHHHHHHHHHHHCCTTSEEEEECCCCSS
T ss_pred HHHHHHHhCCCeEEEEECC-----CCCHHHHHHHHHhCCEEEEEcCCcCCchhHHHHHHHHHhhhhCCCEEEEEEcCCCC
Confidence 3455566667654333221 112223333344677777777621 1 455555433222234444443
Q ss_pred ----HHHHHHHHHcCCCe
Q 023179 262 ----ETTASAAKRLGLKN 275 (286)
Q Consensus 262 ----~~Ta~~l~~~G~~~ 275 (286)
....+.+++.|++.
T Consensus 95 g~a~~~l~~~l~~~G~~~ 112 (161)
T 3hly_A 95 DEPIDALLAQFRNLGLHT 112 (161)
T ss_dssp BCCHHHHHHHHHHTTCEE
T ss_pred cHHHHHHHHHHHHCCCEE
Confidence 34556667778764
No 243
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=51.62 E-value=66 Score=23.32 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=62.6
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHH
Q 023179 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKE 123 (286)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l~~ 123 (286)
.+++|||.-... ....+...|+..|+++..+ .+.++....+.. ..+|.|++- ..++.+ +++.+.+
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~-~~~~l~~ 76 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQC--------GNAIEAVPVAVK-THPHLIITEANMPKISGMD-LFNSLKK 76 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEE--------SSHHHHHHHHHH-HCCSEEEEESCCSSSCHHH-HHHHHHT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEe--------CCHHHHHHHHHc-CCCCEEEEcCCCCCCCHHH-HHHHHHc
Confidence 467888887664 4678888898888755421 122334444422 468988875 234544 5566665
Q ss_pred c-CCCCcEEEEEC-hhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 124 A-GTPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 124 ~-~~~~~~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
. ....++++++. ........+.++. |.. ++..+..+.+.|...|..
T Consensus 77 ~~~~~~~pii~ls~~~~~~~~~~~~~~---g~~-~~l~kp~~~~~L~~~i~~ 124 (147)
T 2zay_A 77 NPQTASIPVIALSGRATAKEEAQLLDM---GFI-DFIAKPVNAIRLSARIKR 124 (147)
T ss_dssp STTTTTSCEEEEESSCCHHHHHHHHHH---TCS-EEEESSCCHHHHHHHHHH
T ss_pred CcccCCCCEEEEeCCCCHHHHHHHHhC---CCC-EEEeCCCCHHHHHHHHHH
Confidence 2 23456666554 3333333322222 654 455666788888776643
No 244
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=51.11 E-value=12 Score=29.71 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=13.2
Q ss_pred HHHHhcCCCccEEEEeCHH
Q 023179 94 SSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 94 ~~~l~~~~~~d~IvFTS~~ 112 (286)
....+.+..+|.|||.||.
T Consensus 76 ~~~~~~l~~aD~iI~~sP~ 94 (191)
T 1t0i_A 76 RSWSRIVNALDIIVFVTPQ 94 (191)
T ss_dssp HHHHHHHHTCSEEEEEEEC
T ss_pred HHHHHHHHhCCEEEEEece
Confidence 3444455678999999875
No 245
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=51.09 E-value=41 Score=29.56 Aligned_cols=163 Identities=12% Similarity=0.094 Sum_probs=87.6
Q ss_pred CeEEEeCCCCchHHH----HHHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeCHHH------HHHH
Q 023179 51 PKVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPEA------GSVF 117 (286)
Q Consensus 51 ~~VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~---l~~~~~~d~IvFTS~~a------v~~~ 117 (286)
.-|++.-..+....+ .+.+++.|++...+-+=+. ...+++.+. |+.....|.|+.--|-- -+..
T Consensus 38 LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~---~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i 114 (301)
T 1a4i_A 38 LAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRT---TTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEV 114 (301)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTT---CCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHH
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHH
Confidence 334444444444333 3446677988875433111 122344443 44557889999876532 1222
Q ss_pred HHHHHH-cCCCCcEEEEEChhhHHHHHHhhhccCCCC-ceeccCCCCCHHHHHHhcccCC--CCCCEEEEEcCC-CChhH
Q 023179 118 LEAWKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSL-DVAFSPSKATGKILASELPKNG--KKKCTVLYPASA-KASNE 192 (286)
Q Consensus 118 ~~~l~~-~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~-~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~~g~-~~~~~ 192 (286)
++.+.- ...|+..-+-+| .|- . |- ...+.| .|++++++.|.... ..|++++++... .....
T Consensus 115 ~~~I~p~KDVDG~hp~N~G-----~l~-~------g~~~~~~~P--cTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p 180 (301)
T 1a4i_A 115 INAIAPEKDVDGLTSINAG-----RLA-R------GDLNDCFIP--CTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAP 180 (301)
T ss_dssp HHTSCGGGBTTCCSHHHHH-----HHH-T------TCCSSCCCC--HHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHH
T ss_pred HhccCCCCCccCCChhhHH-----HHh-c------CCCCCCccC--chHHHHHHHHHHcCCCCCCCEEEEECCCchHHHH
Confidence 222210 112333222122 121 1 21 122343 47888887776654 378999999665 45667
Q ss_pred HHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChH
Q 023179 193 IEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 193 L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~s 238 (286)
+...|...|++|+.+.-. .. .+.+.....|+|+-+.+.
T Consensus 181 ~A~lL~~~gAtVtv~hs~-----t~---~L~~~~~~ADIVI~Avg~ 218 (301)
T 1a4i_A 181 MHDLLLWNNATVTTCHSK-----TA---HLDEEVNKGDILVVATGQ 218 (301)
T ss_dssp HHHHHHHTTCEEEEECTT-----CS---SHHHHHTTCSEEEECCCC
T ss_pred HHHHHHhCCCeEEEEECC-----cc---cHHHHhccCCEEEECCCC
Confidence 889999999998766421 11 223335688998887766
No 246
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=51.07 E-value=21 Score=24.56 Aligned_cols=35 Identities=14% Similarity=0.064 Sum_probs=26.9
Q ss_pred ccCCCCCCCeEEEeC-CCCchHHHHHHHHhCCCcEE
Q 023179 43 SASASNSNPKVVVTR-ERGKNGKLIKALAKHRIDCL 77 (286)
Q Consensus 43 ~~~~~l~g~~VLitR-~~~~~~~l~~~L~~~G~~v~ 77 (286)
+.+..+.|..|.++. .......+.+.++.+|+.+.
T Consensus 3 ~~~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~ 38 (92)
T 4id3_A 3 QSSKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFL 38 (92)
T ss_dssp ---CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEE
T ss_pred ccccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEE
Confidence 345678899999996 34567889999999999976
No 247
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=50.99 E-value=1e+02 Score=26.43 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=26.7
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
.+.+++||||-..+ -+..+++.|.+.|.+|.-+
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 55 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGL 55 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 35589999998766 4678899999999988765
No 248
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=50.84 E-value=60 Score=22.58 Aligned_cols=110 Identities=13% Similarity=0.138 Sum_probs=63.4
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe-----CHHHHHHHHHHHHH
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-----SPEAGSVFLEAWKE 123 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT-----S~~av~~~~~~l~~ 123 (286)
.++||+.-... ....+...|+..|+++... .+.++..+.+.. ..+|.|++- ..++.+ +++.+.+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~~~~-~~~dlvi~d~~~~~~~~g~~-~~~~l~~ 74 (127)
T 2gkg_A 5 SKKILIVESDTALSATLRSALEGRGFTVDET--------TDGKGSVEQIRR-DRPDLVVLAVDLSAGQNGYL-ICGKLKK 74 (127)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHTCEEEEE--------CCHHHHHHHHHH-HCCSEEEEESBCGGGCBHHH-HHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCceEEEe--------cCHHHHHHHHHh-cCCCEEEEeCCCCCCCCHHH-HHHHHhc
Confidence 35888887664 3567888888888865421 122333344422 458888874 224544 5666666
Q ss_pred cC-CCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 124 AG-TPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 124 ~~-~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
.. ...+++++++........+.++. |.. ++..+..+.+.|...+..
T Consensus 75 ~~~~~~~~ii~~~~~~~~~~~~~~~~---g~~-~~l~kp~~~~~l~~~i~~ 121 (127)
T 2gkg_A 75 DDDLKNVPIVIIGNPDGFAQHRKLKA---HAD-EYVAKPVDADQLVERAGA 121 (127)
T ss_dssp STTTTTSCEEEEECGGGHHHHHHSTT---CCS-EEEESSCCHHHHHHHHHH
T ss_pred CccccCCCEEEEecCCchhHHHHHHh---Ccc-hheeCCCCHHHHHHHHHH
Confidence 42 35677776655554444444222 543 455666788888776643
No 249
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=50.74 E-value=17 Score=31.09 Aligned_cols=125 Identities=8% Similarity=0.100 Sum_probs=72.7
Q ss_pred EEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeee
Q 023179 133 VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 133 aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
++|=+|..++.+++ + . ..+. ...++.+.+. . ..++||.++.... -+.+.|++. . ++.+++.
T Consensus 83 algiAaiNAv~~~~-----~-~--~~~~--~~~d~~~~~~-~-~~~~kV~vIG~~p---~l~~~l~~~-~---~v~V~d~ 143 (249)
T 3npg_A 83 TLGVAAINAVSQYY-----I-D--LREA--KWIDVTELIQ-Q-DEIKRIAIIGNMP---PVVRTLKEK-Y---EVYVFER 143 (249)
T ss_dssp HHHHHHHHHHHHHH-----C-C--CTTC--BCCCHHHHHH-T-SCCSEEEEESCCH---HHHHHHTTT-S---EEEEECC
T ss_pred HHHHHHHHHhhhhc-----c-c--cCCc--cccCHHHHHh-h-cCCCEEEEECCCH---HHHHHHhcc-C---CEEEEEC
Confidence 45556667776652 2 1 1111 1223445554 2 2458999998654 367778765 3 6778887
Q ss_pred ecCCC---C-cHHHH-HHcCCCCEEEEeChHHHHHHHHHhccccCCCceEEEeCHHHHH---HHHHcCCCeE
Q 023179 213 EPVHH---V-DQTVL-KQALSIPVVAVASPSAVRSWVNLISDTEQWSNSVACIGETTAS---AAKRLGLKNV 276 (286)
Q Consensus 213 ~~~~~---~-~~~~~-~~~~~~d~IvftS~sav~~~~~~~~~~~~~~~~iv~IG~~Ta~---~l~~~G~~~v 276 (286)
.+... . +.... ..+...|+|+.|.++-++.-++.+-+.......++.+||+|.- .+.++|+..+
T Consensus 144 ~p~~~~~~~~~~~~e~~~l~~~D~v~iTGsTlvN~Ti~~lL~~~~~~~~vvl~GPS~~~~P~~~~~~Gv~~l 215 (249)
T 3npg_A 144 NMKLWDRDTYSDTLEYHILPEVDGIIASASCIVNGTLDMILDRAKKAKLIVITGPTGQLLPEFLKGTKVTHL 215 (249)
T ss_dssp SGGGCCSSEECGGGHHHHGGGCSEEEEETTHHHHTCHHHHHHHCSSCSEEEEESGGGCSCGGGGTTSSCCEE
T ss_pred CCcccCCCCCChhHHHhhhccCCEEEEEeeeeccCCHHHHHHhCcccCeEEEEecCchhhHHHHhhCCccEE
Confidence 77531 1 11111 2357899999999998887665544322123467899998863 2344566544
No 250
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}
Probab=50.71 E-value=17 Score=33.09 Aligned_cols=162 Identities=10% Similarity=0.091 Sum_probs=88.8
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCC
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~~~~~~ 128 (286)
.|+|+++...+. ..+.|++.| ++...+-... . . + .+.++|.++..|..-+ +.+++ . .+
T Consensus 3 mmkIl~~~~~p~---~~~~~~~~~-~v~~~~~~~~----~-~---~---~l~~ad~li~~~~~~v~~~ll~-----~-~~ 61 (381)
T 3oet_A 3 AMKILVDENMPY---ARELFSRLG-EVKAVPGRPI----P-V---E---ELNHADALMVRSVTKVNESLLS-----G-TP 61 (381)
T ss_dssp CCEEEEETTSTT---HHHHHTTSS-EEEEECC-------C-H---H---HHTTCSEEEECTTSCBSHHHHT-----T-SC
T ss_pred ceEEEECCCCcH---HHHHHhhCC-cEEEeCCCCC----C-H---H---HHCCCEEEEECCCCCCCHHHHc-----C-CC
Confidence 389999876643 345566665 5544331110 1 1 1 2467899988764322 22222 1 23
Q ss_pred cEEE-EEChhh----HHHHHHhhhccCCCCceeccCCCCCHHHHHHhc-------cc---CCCCCCEEEEEcCCCChhHH
Q 023179 129 VRIG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL-------PK---NGKKKCTVLYPASAKASNEI 193 (286)
Q Consensus 129 ~~i~-aVG~~T----a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L-------~~---~~~~~~rvL~~~g~~~~~~L 193 (286)
++++ ..|.++ .+++++. |+.+...|. .+++.+++.. .+ ....|+++.+++-..-...+
T Consensus 62 Lk~I~~~~~G~D~iD~~~~~~~------gI~v~n~pg-~~~~~VAE~~l~~lL~l~r~~g~~l~gktvGIIGlG~IG~~v 134 (381)
T 3oet_A 62 INFVGTATAGTDHVDEAWLKQA------GIGFSAAPG-CNAIAVVEYVFSALLMLAERDGFSLRDRTIGIVGVGNVGSRL 134 (381)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCEEECCTT-TTHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHH
T ss_pred CEEEEEccccccccCHHHHHhC------CEEEEECCC-cCcchhHHHHHHHHHHHHHhcCCccCCCEEEEEeECHHHHHH
Confidence 5554 334333 3677888 998877654 4555544332 11 12367899999766666678
Q ss_pred HHHHHhCCCeeEEEEeeeeecCC-CCcHHHHHHcCCCCEEEEeChHH
Q 023179 194 EEGLSNRGFEVVRLNTYTTEPVH-HVDQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 194 ~~~L~~~G~~V~~~~vY~~~~~~-~~~~~~~~~~~~~d~IvftS~sa 239 (286)
...|+..|++|.-+..+...... .......+.+...|+|++.-|..
T Consensus 135 A~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt 181 (381)
T 3oet_A 135 QTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLY 181 (381)
T ss_dssp HHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCC
T ss_pred HHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCC
Confidence 99999999877655433221100 01111111134688888887754
No 251
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=50.54 E-value=72 Score=23.39 Aligned_cols=116 Identities=17% Similarity=0.147 Sum_probs=63.9
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAW 121 (286)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~l 121 (286)
....++|||.-.... ...+...|+..|.. +.+....+.++..+.+ ....+|.|++-- .++.+ +++.+
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~------~~v~~~~~~~~al~~l-~~~~~dlii~D~~l~~~~g~~-~~~~l 88 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDV------ESVLQAKNGQEAIQLL-EKESVDIAILDVEMPVKTGLE-VLEWI 88 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTE------EEEEEESSHHHHHHHH-TTSCCSEEEECSSCSSSCHHH-HHHHH
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCc------EEEEEECCHHHHHHHh-hccCCCEEEEeCCCCCCcHHH-HHHHH
Confidence 334678999987653 45677777766521 2222222334455555 345688888742 23444 55666
Q ss_pred HHcCCCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC
Q 023179 122 KEAGTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (286)
Q Consensus 122 ~~~~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~ 175 (286)
.+.. ..++++++ +....+...+.++. |.. ++..+..+.+.|...|....
T Consensus 89 ~~~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~Kp~~~~~l~~~i~~~~ 138 (150)
T 4e7p_A 89 RSEK-LETKVVVVTTFKRAGYFERAVKA---GVD-AYVLKERSIADLMQTLHTVL 138 (150)
T ss_dssp HHTT-CSCEEEEEESCCCHHHHHHHHHT---TCS-EEEETTSCHHHHHHHHHHHH
T ss_pred HHhC-CCCeEEEEeCCCCHHHHHHHHHC---CCc-EEEecCCCHHHHHHHHHHHH
Confidence 6543 45666554 44444444333222 654 46667778888888776543
No 252
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=50.26 E-value=24 Score=26.74 Aligned_cols=61 Identities=25% Similarity=0.244 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH--------HHHHHHHHHHc--CCCCcEEE
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--------GSVFLEAWKEA--GTPNVRIG 132 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a--------v~~~~~~l~~~--~~~~~~i~ 132 (286)
+.+++.|.+.|+++..+.. .+ ...+..+|.|||-+|.= +..|++.+... .+.+.+++
T Consensus 20 ~~ia~~l~~~g~~v~~~~~------~~-------~~~l~~~d~vi~g~pt~g~g~~p~~~~~f~~~l~~~~~~l~~~~~a 86 (147)
T 2hna_A 20 EHLAEKLEEAGFTTETLHG------PL-------LEDLPASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFG 86 (147)
T ss_dssp HHHHHHHHHTTCCEEEECC------TT-------SCSSCSEEEEEEECCTTTTCCTTSSCHHHHHHHHHHCCCTTEEEEE
T ss_pred HHHHHHHHHCCCceEEecC------CC-------HHHcccCCeEEEEECccCCCCCChhHHHHHHHHHhhccccCCCEEE
Confidence 4555556667888765432 11 12457799999988754 46788877654 45567777
Q ss_pred EECh
Q 023179 133 VVGA 136 (286)
Q Consensus 133 aVG~ 136 (286)
+.|-
T Consensus 87 vfg~ 90 (147)
T 2hna_A 87 AIGI 90 (147)
T ss_dssp EESC
T ss_pred EEec
Confidence 7763
No 253
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=50.22 E-value=66 Score=25.70 Aligned_cols=113 Identities=15% Similarity=0.181 Sum_probs=70.8
Q ss_pred CCCeEEEeCCCCc---hHHHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCccE--EEEeCHHHHHHHHH
Q 023179 49 SNPKVVVTRERGK---NGKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFDW--IIITSPEAGSVFLE 119 (286)
Q Consensus 49 ~g~~VLitR~~~~---~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~~~~~d~--IvFTS~~av~~~~~ 119 (286)
.+|+|.|-..... .+.+.+.|++.|++|+.+-++..++. |+. .+-+.+ ..+.+|. +|.-|..++....
T Consensus 19 ~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~-dYpd~a~~va~~V-~~g~~d~GIliCGTGiG~sIaA- 95 (169)
T 3ph3_A 19 SHMKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESV-DYPDFGLKVAEAV-KSGECDRGIVICGTGLGISIAA- 95 (169)
T ss_dssp --CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCC-CHHHHHHHHHHHH-HTTSSSEEEEEESSSHHHHHHH-
T ss_pred CCCEEEEEeCchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCC-CHHHHHHHHHHHH-HcCCCCEEEEEcCCcHHHHHHh-
Confidence 3678888876653 45788889999999999988765442 332 233334 2345554 4444555544332
Q ss_pred HHHHcCCCCcEEEE-EChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 120 AWKEAGTPNVRIGV-VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 120 ~l~~~~~~~~~i~a-VG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
+..++++.+. --+.+|+..+++ . .-++...+.+..+..++..|.+
T Consensus 96 ----NKv~GIRAAlc~d~~sA~~aR~h---N--nANVL~lG~Rvig~~lA~~Iv~ 141 (169)
T 3ph3_A 96 ----NKVPGIRAAVCTNSYMARMSREH---N--DANILALGERVVGLDLALDIVD 141 (169)
T ss_dssp ----TTSTTCCEEECSSHHHHHHHHHT---T--CCSEEEEETTTSCHHHHHHHHH
T ss_pred ----hcCCCeEEEEeCCHHHHHHHHHh---C--CCcEEEEcccccCHHHHHHHHH
Confidence 3456777764 467888888887 2 4455556777777777777654
No 254
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=50.09 E-value=25 Score=25.94 Aligned_cols=33 Identities=6% Similarity=-0.080 Sum_probs=28.0
Q ss_pred CCCCCCCeEEEeCCCC--chHHHHHHHHhCCCcEE
Q 023179 45 SASNSNPKVVVTRERG--KNGKLIKALAKHRIDCL 77 (286)
Q Consensus 45 ~~~l~g~~VLitR~~~--~~~~l~~~L~~~G~~v~ 77 (286)
..+|.|++|++|-.-. ..+++.+.++++|+.|.
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~ 64 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 64 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEE
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEee
Confidence 3579999999998764 47899999999999876
No 255
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=50.03 E-value=24 Score=26.19 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=27.8
Q ss_pred CCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEE
Q 023179 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (286)
Q Consensus 45 ~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~ 77 (286)
..+|.|++|++|-.-. ..+++.+.++++|+.+.
T Consensus 8 ~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~ 41 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLT 41 (113)
T ss_dssp CCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEE
T ss_pred CCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEc
Confidence 4689999999997654 46899999999999886
No 256
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=49.80 E-value=55 Score=28.05 Aligned_cols=110 Identities=14% Similarity=0.136 Sum_probs=65.0
Q ss_pred CCeEEEeCCCCchH----H-HHHH--------HHhC-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH--
Q 023179 50 NPKVVVTRERGKNG----K-LIKA--------LAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-- 113 (286)
Q Consensus 50 g~~VLitR~~~~~~----~-l~~~--------L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a-- 113 (286)
..+|++....++.. . +... |+.+ |++|+++-. ..| .+.+.+.. ...+.|.|.+.+...
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~--~vp---~e~iv~aa-~e~~~d~VglS~l~t~~ 193 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS--QVA---NEDFIKKA-VELEADVLLVSQTVTQK 193 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS--SBC---HHHHHHHH-HHTTCSEEEEECCCCTT
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC--CCC---HHHHHHHH-HHcCCCEEEEEeecCCc
Confidence 56788876654332 2 2222 7788 999988765 122 24454544 235788888876332
Q ss_pred ------HHHHHHHHHHcCC-CCcEEEEEChhh-HHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc
Q 023179 114 ------GSVFLEAWKEAGT-PNVRIGVVGAGT-ASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (286)
Q Consensus 114 ------v~~~~~~l~~~~~-~~~~i~aVG~~T-a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~ 172 (286)
+..+.+.+++.+. +++++++=|... .+.+++. |....+ +....+..+++.|.
T Consensus 194 ~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~~a~~i------Gad~~~-~da~~~~~~a~~l~ 253 (262)
T 1xrs_B 194 NVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNEIAKEL------GYDAGF-GPGRFADDVATFAV 253 (262)
T ss_dssp SHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHHHHTT------TCSEEE-CTTCCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHc------CCeEEE-CCchHHHHHHHHHH
Confidence 3445666767665 358888777654 4445555 876544 34455666666554
No 257
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=49.59 E-value=47 Score=27.49 Aligned_cols=75 Identities=8% Similarity=-0.058 Sum_probs=48.5
Q ss_pred CCCCCCeEEEeCCC---CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (286)
Q Consensus 46 ~~l~g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv--FTS~~av~~~~~~ 120 (286)
..+.+++||||-.. +-+..+++.|.++|++|+.+-. .. ...+.+.+..+......++. +++..+++.+++.
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r--~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYV--GD--RFKDRITEFAAEFGSELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEES--SG--GGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEec--ch--hhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHH
Confidence 56779999999865 4477899999999998764321 11 11233333333333333333 4789999999887
Q ss_pred HHHc
Q 023179 121 WKEA 124 (286)
Q Consensus 121 l~~~ 124 (286)
+.+.
T Consensus 86 ~~~~ 89 (271)
T 3ek2_A 86 LKTH 89 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 258
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=49.35 E-value=75 Score=23.29 Aligned_cols=109 Identities=10% Similarity=0.136 Sum_probs=61.1
Q ss_pred CCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHHc
Q 023179 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (286)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l~~~ 124 (286)
+++|||.-.... ...+...|+ .|+++..+ .+..+....+.....||.|++- ..++.+ +++.+.+.
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~-~~~~v~~~--------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~-~~~~l~~~ 73 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLS-FDFEVTTC--------ESGPEALACIKKSDPFSVIMVDMRMPGMEGTE-VIQKARLI 73 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHT-TTSEEEEE--------SSHHHHHHHHHHSCCCSEEEEESCCSSSCHHH-HHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhc-cCceEEEe--------CCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHH-HHHHHHhc
Confidence 578999987654 345556664 46554321 2334444555444457988875 334555 45556654
Q ss_pred CCCCcEEEE-EChhhHHHHHHhhhccCCC-CceeccCCCCCHHHHHHhccc
Q 023179 125 GTPNVRIGV-VGAGTASIFEEVIQSSKCS-LDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 125 ~~~~~~i~a-VG~~Ta~~L~~~~~~~~~G-~~~~~~~~~~~~e~L~~~L~~ 173 (286)
. ...++++ .+........+.++. | .. ++..+..+.+.|...|..
T Consensus 74 ~-~~~~ii~~s~~~~~~~~~~~~~~---g~~~-~~l~KP~~~~~L~~~i~~ 119 (151)
T 3kcn_A 74 S-PNSVYLMLTGNQDLTTAMEAVNE---GQVF-RFLNKPCQMSDIKAAINA 119 (151)
T ss_dssp C-SSCEEEEEECGGGHHHHHHHHHH---TCCS-EEEESSCCHHHHHHHHHH
T ss_pred C-CCcEEEEEECCCCHHHHHHHHHc---CCee-EEEcCCCCHHHHHHHHHH
Confidence 4 3555554 455554444443322 5 43 456666788888777754
No 259
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=49.19 E-value=29 Score=28.89 Aligned_cols=76 Identities=14% Similarity=0.091 Sum_probs=47.3
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~ 137 (286)
.-+.+.|+++|..+.....+......+ .+.+.+.|.....+|+|+.++-..+..+++.+.+.|. +++.++..+..
T Consensus 151 ~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vig~d~~ 230 (292)
T 3k4h_A 151 AGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNA 230 (292)
T ss_dssp HHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEEEESCC
T ss_pred HHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEEcChHHHHHHHHHHHHhCCCCCCeEEEEEecCc
Confidence 346677888887665333332221111 2345555644457889988888777778888888776 46777777665
Q ss_pred h
Q 023179 138 T 138 (286)
Q Consensus 138 T 138 (286)
.
T Consensus 231 ~ 231 (292)
T 3k4h_A 231 L 231 (292)
T ss_dssp H
T ss_pred c
Confidence 3
No 260
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=49.14 E-value=46 Score=28.80 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=23.2
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
+..+++||||-..+ -+..+.+.|.+.|.++.-+
T Consensus 7 ~M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l 40 (346)
T 3i6i_A 7 PSPKGRVLIAGATGFIGQFVATASLDAHRPTYIL 40 (346)
T ss_dssp ----CCEEEECTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEE
Confidence 34568999998865 4678889999999877643
No 261
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=48.70 E-value=58 Score=27.74 Aligned_cols=75 Identities=11% Similarity=0.019 Sum_probs=46.6
Q ss_pred CCCCCCeEEEeCCC---CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (286)
Q Consensus 46 ~~l~g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv--FTS~~av~~~~~~ 120 (286)
..+.|++||||-.. +-+..+++.|.+.|++|+.+-. .. ...+.+.+..+......++. +++..+++.+++.
T Consensus 26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r--~~--~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYL--SE--TFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEES--SG--GGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHH
T ss_pred hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeC--Ch--HHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHH
Confidence 45789999999875 4577899999999999764321 11 11122333332223322222 4788899988887
Q ss_pred HHHc
Q 023179 121 WKEA 124 (286)
Q Consensus 121 l~~~ 124 (286)
+.+.
T Consensus 102 ~~~~ 105 (296)
T 3k31_A 102 LAEE 105 (296)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7553
No 262
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=48.46 E-value=32 Score=30.56 Aligned_cols=79 Identities=16% Similarity=0.070 Sum_probs=44.7
Q ss_pred CCeEEEeC-CCCc-hHH----HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-------HHHH
Q 023179 50 NPKVVVTR-ERGK-NGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSV 116 (286)
Q Consensus 50 g~~VLitR-~~~~-~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~-------av~~ 116 (286)
+++|+|.- +..+ ... +++.|.+.|+++..+.+ .. .+...+ ...+..+|.|||.||. .+..
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~---~~-~~~~~~---~~~~~~~d~ii~gsp~~~~~~~~~~~~ 324 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWC---KA-CHHSQI---MSEISDAGAVIVGSPTHNNGILPYVAG 324 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEET---TT-SCHHHH---HHHHHTCSEEEEECCCBTTBCCHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEEC---CC-CCHHHH---HHHHHHCCEEEEECCccCCCchHHHHH
Confidence 46666653 3322 233 44555566765543322 11 122223 2234679999999963 5777
Q ss_pred HHHHHHHcCCCCcEEEEEC
Q 023179 117 FLEAWKEAGTPNVRIGVVG 135 (286)
Q Consensus 117 ~~~~l~~~~~~~~~i~aVG 135 (286)
|++.+....+.+.+++++|
T Consensus 325 ~l~~l~~~~l~~k~~~~f~ 343 (402)
T 1e5d_A 325 TLQYIKGLRPQNKIGGAFG 343 (402)
T ss_dssp HHHHHHHTCCCSCEEEEEE
T ss_pred HHHHhhhcccCCCEEEEEE
Confidence 8887766555667776665
No 263
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=48.42 E-value=1.2e+02 Score=26.88 Aligned_cols=184 Identities=9% Similarity=0.025 Sum_probs=101.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH--H-HHHHHHHHHcCCCCcEEEE-EChhh-
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--G-SVFLEAWKEAGTPNVRIGV-VGAGT- 138 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a--v-~~~~~~l~~~~~~~~~i~a-VG~~T- 138 (286)
.+.+.|++.|+++...+--.. +.+.+.+ .+.++|.|+.++-.. + +.+++. .+++++++ .|-++
T Consensus 31 ~~~~~L~~~g~ev~~~~~~~~----~~~~~~~---~~~~ad~li~~~~~~~~~~~~~l~~-----~p~Lk~i~~~g~G~d 98 (351)
T 3jtm_A 31 GIRDWLESQGHQYIVTDDKEG----PDCELEK---HIPDLHVLISTPFHPAYVTAERIKK-----AKNLKLLLTAGIGSD 98 (351)
T ss_dssp GCHHHHHHTTCEEEEESCCSS----TTSHHHH---HTTTCSEEEECTTSCCCBCHHHHHH-----CSSCCEEEESSSCCT
T ss_pred HHHHHHHHCCCEEEEeCCCCC----CHHHHHH---HhCCCEEEEEccCCCCCCCHHHHhh-----CCCCeEEEEeCeeec
Confidence 578899999999876543221 2233443 357889888654211 1 122332 23555544 33333
Q ss_pred ---HHHHHHhhhccCCCCceeccCCCCCHHHHHHhc-------c-----------------------cCCCCCCEEEEEc
Q 023179 139 ---ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL-------P-----------------------KNGKKKCTVLYPA 185 (286)
Q Consensus 139 ---a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L-------~-----------------------~~~~~~~rvL~~~ 185 (286)
.+++++. |+.+..+|. .+++.+++.- . .....|++|.++.
T Consensus 99 ~id~~~a~~~------gI~V~n~~g-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG 171 (351)
T 3jtm_A 99 HIDLQAAAAA------GLTVAEVTG-SNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVG 171 (351)
T ss_dssp TBCHHHHHHT------TCEEEECTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEEC
T ss_pred ccCHHHHHhc------CeeEEECCC-cCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEE
Confidence 3577778 999877764 3444433211 1 0113678999997
Q ss_pred CCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCc---------HHHHHHcCCCCEEEEeChHH--H-----HHHHHHhcc
Q 023179 186 SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVD---------QTVLKQALSIPVVAVASPSA--V-----RSWVNLISD 249 (286)
Q Consensus 186 g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~---------~~~~~~~~~~d~IvftS~sa--v-----~~~~~~~~~ 249 (286)
-..-...+...|+..|++|. .|.+.+.+... ..+.+.+...|+|++.-|.. . +.++..++.
T Consensus 172 ~G~IG~~vA~~l~~~G~~V~---~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ 248 (351)
T 3jtm_A 172 AGRIGKLLLQRLKPFGCNLL---YHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKK 248 (351)
T ss_dssp CSHHHHHHHHHHGGGCCEEE---EECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCT
T ss_pred eCHHHHHHHHHHHHCCCEEE---EeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCC
Confidence 66666678999999998754 45443211100 01111235789999988742 1 334455543
Q ss_pred ccCCCceEEEeC-------HHHHHHHHHcCC
Q 023179 250 TEQWSNSVACIG-------ETTASAAKRLGL 273 (286)
Q Consensus 250 ~~~~~~~iv~IG-------~~Ta~~l~~~G~ 273 (286)
+..++-+| ....++|++-++
T Consensus 249 ----gailIN~aRG~~vde~aL~~aL~~g~i 275 (351)
T 3jtm_A 249 ----GVLIVNNARGAIMERQAVVDAVESGHI 275 (351)
T ss_dssp ----TEEEEECSCGGGBCHHHHHHHHHHTSE
T ss_pred ----CCEEEECcCchhhCHHHHHHHHHhCCc
Confidence 33344443 445666666443
No 264
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=48.26 E-value=27 Score=27.45 Aligned_cols=90 Identities=13% Similarity=0.031 Sum_probs=57.6
Q ss_pred CCchHHHHHHHHhCC-CcEEEeceEEeeeCCCchHHHHHHhc--C-CCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEE
Q 023179 59 RGKNGKLIKALAKHR-IDCLELPLIQHAQGPDTDRLSSVLNA--D-TIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVV 134 (286)
Q Consensus 59 ~~~~~~l~~~L~~~G-~~v~~~P~~~~~~~~~~~~l~~~l~~--~-~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aV 134 (286)
.++..++.+.|++.| +.+..+. . .+...+...++. + ..+|.++..+......|...+...+.+.-.+++|
T Consensus 107 ~~~~~~~l~~l~~~g~~~~~i~t---~---~~~~~~~~~l~~~~~~~~f~~~~~~~kpk~~~~~~~~~~lgi~~~~~i~i 180 (234)
T 3ddh_A 107 LPGVKETLKTLKETGKYKLVVAT---K---GDLLDQENKLERSGLSPYFDHIEVMSDKTEKEYLRLLSILQIAPSELLMV 180 (234)
T ss_dssp CTTHHHHHHHHHHHCCCEEEEEE---E---SCHHHHHHHHHHHTCGGGCSEEEEESCCSHHHHHHHHHHHTCCGGGEEEE
T ss_pred CccHHHHHHHHHhCCCeEEEEEe---C---CchHHHHHHHHHhCcHhhhheeeecCCCCHHHHHHHHHHhCCCcceEEEE
Confidence 345677888888888 7665332 1 111222222322 2 3578888776666666666666667777788999
Q ss_pred Chhh---HHHHHHhhhccCCCCceeccCC
Q 023179 135 GAGT---ASIFEEVIQSSKCSLDVAFSPS 160 (286)
Q Consensus 135 G~~T---a~~L~~~~~~~~~G~~~~~~~~ 160 (286)
|..- .+.++.. |+.+..++.
T Consensus 181 GD~~~~Di~~a~~a------G~~~v~v~~ 203 (234)
T 3ddh_A 181 GNSFKSDIQPVLSL------GGYGVHIPF 203 (234)
T ss_dssp ESCCCCCCHHHHHH------TCEEEECCC
T ss_pred CCCcHHHhHHHHHC------CCeEEEecC
Confidence 9884 4778888 998877643
No 265
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=48.13 E-value=14 Score=30.01 Aligned_cols=56 Identities=11% Similarity=0.245 Sum_probs=38.1
Q ss_pred HHHHHHHhC--CCeeEEEEeeeeecCCCC-------------------------cHHHHHHcCCCCEEEEeCh-------
Q 023179 192 EIEEGLSNR--GFEVVRLNTYTTEPVHHV-------------------------DQTVLKQALSIPVVAVASP------- 237 (286)
Q Consensus 192 ~L~~~L~~~--G~~V~~~~vY~~~~~~~~-------------------------~~~~~~~~~~~d~IvftS~------- 237 (286)
.+.+.|++. |.+|+.+.+|+....... ..++++.+...|.|||.+|
T Consensus 24 ~~~~~~~~~~~g~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~p 103 (212)
T 3r6w_A 24 VFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQADLALSDQLVGELFDSDLLVISTPMYNFSVP 103 (212)
T ss_dssp HHHHHHHHHCTTCCEEEEESSSSCCCCCCHHHHHHHTCSSGGGCCHHHHHHHHHHHHHHHHHHHCSEEEEEEECBTTBCC
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEcCcccccCC
Confidence 456777766 889999998876321110 0112233568999999886
Q ss_pred HHHHHHHHHh
Q 023179 238 SAVRSWVNLI 247 (286)
Q Consensus 238 sav~~~~~~~ 247 (286)
..+++|++.+
T Consensus 104 a~lK~~iD~~ 113 (212)
T 3r6w_A 104 SGLKAWIDQI 113 (212)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6899999987
No 266
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=48.03 E-value=47 Score=28.88 Aligned_cols=162 Identities=16% Similarity=0.117 Sum_probs=89.2
Q ss_pred CCeEEEeCCCCchHH----HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH---hcCCCccEEEEeCHHH--H--HHHH
Q 023179 50 NPKVVVTRERGKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL---NADTIFDWIIITSPEA--G--SVFL 118 (286)
Q Consensus 50 g~~VLitR~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l---~~~~~~d~IvFTS~~a--v--~~~~ 118 (286)
+.-|++.-..+.... -.+.+++.|++...+.+-+.. ..++|.+.+ +.....|.|+..-|-- . +..+
T Consensus 35 ~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~---s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~ 111 (285)
T 3p2o_A 35 CLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENI---TQNELLALINTLNHDDSVHGILVQLPLPDHICKDLIL 111 (285)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTC---CHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHH
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCC---CHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHH
Confidence 334455544433322 345566789988765442221 123444444 4457899999998822 1 2223
Q ss_pred HHHHH-cCCCCcEEEEEChhhHHHHHHhhhccCCCCcee-ccCCCCCHHHHHHhcccCC--CCCCEEEEEc-CCCChhHH
Q 023179 119 EAWKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVA-FSPSKATGKILASELPKNG--KKKCTVLYPA-SAKASNEI 193 (286)
Q Consensus 119 ~~l~~-~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~-~~~~~~~~e~L~~~L~~~~--~~~~rvL~~~-g~~~~~~L 193 (286)
+.+.. ...|+.. +.-.-.|- . |- .. +.| .|+.+.++.|.... ..|++++++. |+.....+
T Consensus 112 ~~I~p~KDVDg~~-----~~N~g~l~-~------g~-~~g~~P--cTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~ 176 (285)
T 3p2o_A 112 ESIISSKDVDGFH-----PINVGYLN-L------GL-ESGFLP--CTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPM 176 (285)
T ss_dssp HHSCGGGCTTCCS-----HHHHHHHH-T------TC-CSSCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHH
T ss_pred hhCCcccccccCC-----Hhhhhhhh-c------CC-CCCCCC--CCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHH
Confidence 32211 1123322 21111111 1 21 12 333 46778877776653 3789999996 55567778
Q ss_pred HHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeCh
Q 023179 194 EEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 194 ~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~ 237 (286)
...|...|++|..+.-++ .. +.+.....|+|+-+-+
T Consensus 177 A~lL~~~gAtVtv~h~~t-----~~---L~~~~~~ADIVI~Avg 212 (285)
T 3p2o_A 177 ATMLLNAGATVSVCHIKT-----KD---LSLYTRQADLIIVAAG 212 (285)
T ss_dssp HHHHHHTTCEEEEECTTC-----SC---HHHHHTTCSEEEECSS
T ss_pred HHHHHHCCCeEEEEeCCc-----hh---HHHHhhcCCEEEECCC
Confidence 999999999987665321 11 2223468999988876
No 267
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=47.74 E-value=1e+02 Score=24.46 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=66.0
Q ss_pred CeEEEeCCCCc---hHHHHHHHHhCCCcEEEeceEEeeeC--CCc-hHHHHHHhcCCCcc--EEEEeCHHHHHHHHHHHH
Q 023179 51 PKVVVTRERGK---NGKLIKALAKHRIDCLELPLIQHAQG--PDT-DRLSSVLNADTIFD--WIIITSPEAGSVFLEAWK 122 (286)
Q Consensus 51 ~~VLitR~~~~---~~~l~~~L~~~G~~v~~~P~~~~~~~--~~~-~~l~~~l~~~~~~d--~IvFTS~~av~~~~~~l~ 122 (286)
|+|.|-..... .+.+.+.|+++|++|+.+-.+...+. ||. ..+-+.+ ..+.+| .+|.-|..++....+
T Consensus 22 MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V-~~g~~d~GIliCGTGiG~sIaAN--- 97 (166)
T 3s5p_A 22 MKVAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAV-TSGRADCCILVCGTGIGISIAAN--- 97 (166)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHH-HTTSCSEEEEEESSSHHHHHHHH---
T ss_pred eEEEEEECchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHH-HcCCCcEEEEEcCCcHHHHHHhh---
Confidence 78888876643 45788889999999999987765432 221 2333344 234455 444455555543333
Q ss_pred HcCCCCcEEE-EEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 123 EAGTPNVRIG-VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 123 ~~~~~~~~i~-aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
..++++.+ |--+.+|+..+++ . .-++...+.+..+.+++..|.+
T Consensus 98 --Kv~GIRAAlc~d~~sA~laR~h---N--nANVL~lG~Rvig~~lA~~Iv~ 142 (166)
T 3s5p_A 98 --KMKGIRCALCSTEYDAEMARKH---N--NANALALGGRTTGPEVAASILS 142 (166)
T ss_dssp --TSTTCCEEECSSHHHHHHHHHT---T--CCCEEEEETTTSCHHHHHHHHH
T ss_pred --cCCCeEEEEeCCHHHHHHHHHh---C--CCcEEEEcccccCHHHHHHHHH
Confidence 34677775 4456788888887 2 4455455667677777666654
No 268
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=47.70 E-value=81 Score=23.18 Aligned_cols=109 Identities=12% Similarity=0.157 Sum_probs=61.9
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHHc
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l~~~ 124 (286)
+++|||.-... ....+...|+..|+++..+ .+.++....+ ....+|.|++- ..++.+ +++.+.+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l-~~~~~dliild~~l~~~~g~~-~~~~l~~~ 72 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSF--------ASATEALAGL-SADFAGIVISDIRMPGMDGLA-LFRKILAL 72 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHTC-CTTCCSEEEEESCCSSSCHHH-HHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEE--------CCHHHHHHHH-HhCCCCEEEEeCCCCCCCHHH-HHHHHHhh
Confidence 57888887665 3567888888888765422 1223333333 23568988875 234544 45556554
Q ss_pred CCCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 125 GTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 125 ~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
. ..++++++ +........+.++. |.. ++..+..+.+.|...+..
T Consensus 73 ~-~~~pii~ls~~~~~~~~~~~~~~---g~~-~~l~kP~~~~~L~~~i~~ 117 (155)
T 1qkk_A 73 D-PDLPMILVTGHGDIPMAVQAIQD---GAY-DFIAKPFAADRLVQSARR 117 (155)
T ss_dssp C-TTSCEEEEECGGGHHHHHHHHHT---TCC-EEEESSCCHHHHHHHHHH
T ss_pred C-CCCCEEEEECCCChHHHHHHHhc---CCC-eEEeCCCCHHHHHHHHHH
Confidence 3 35666554 44444433333222 554 455666788888777754
No 269
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=47.37 E-value=76 Score=27.50 Aligned_cols=112 Identities=12% Similarity=0.100 Sum_probs=61.8
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEece-----------EEeeeCC--CchHHHHHHhcCCCccEEEEeCHHHHHH
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPL-----------IQHAQGP--DTDRLSSVLNADTIFDWIIITSPEAGSV 116 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~-----------~~~~~~~--~~~~l~~~l~~~~~~d~IvFTS~~av~~ 116 (286)
.++|+|.-...-+..+++.|.+.|. +.-+.. +...... +.+.|.+ . .+.+.|.++.+.++....
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~-a-~i~~a~~vi~~~~~d~~n 191 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEK-A-NVRGARAVIVDLESDSET 191 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHH-T-CSTTEEEEEECCSSHHHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHh-c-ChhhccEEEEcCCccHHH
Confidence 4567777765566777777777776 443211 1111111 1122222 2 367899999988755443
Q ss_pred HHHH--HHHcCCCCcEEEEE--ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhc
Q 023179 117 FLEA--WKEAGTPNVRIGVV--GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASEL 171 (286)
Q Consensus 117 ~~~~--l~~~~~~~~~i~aV--G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L 171 (286)
..-. +++. ..+.++++. .+...+.+++. |....+.|+...+..|+..+
T Consensus 192 ~~~~~~ar~~-~~~~~iiar~~~~~~~~~l~~~------G~d~vi~~~~~~~~~l~~~~ 243 (336)
T 1lnq_A 192 IHCILGIRKI-DESVRIIAEAERYENIEQLRMA------GADQVISPFVISGRLMSRSI 243 (336)
T ss_dssp HHHHHHHHTT-CTTSEEEEECSSGGGHHHHHHT------TCSEEECHHHHHHHHHHHTS
T ss_pred HHHHHHHHHH-CCCCeEEEEECCHHHHHHHHHc------CCCEEEChhHhHHHHHHHHH
Confidence 3322 2222 235566654 56677888888 98876666544444444433
No 270
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=47.33 E-value=21 Score=33.91 Aligned_cols=140 Identities=10% Similarity=-0.030 Sum_probs=78.8
Q ss_pred hHHHHHHHHhCCCcEEEeceEE------------eeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc-CCCC
Q 023179 62 NGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA-GTPN 128 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~------------~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~-~~~~ 128 (286)
..++.+.|++.|+++..+|=+. .-+.. ..+++ +.+....+.-+..++.......+.+++. +.+-
T Consensus 237 ~~elkrlL~~~Gi~v~~lpd~s~~ld~p~~~~~~~~~gg--tt~~e-i~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~ 313 (523)
T 3u7q_B 237 FRVIKRMLSEMGVGYSLLSDPEEVLDTPADGQFRMYAGG--TTQEE-MKDAPNALNTVLLQPWHLEKTKKFVEGTWKHEV 313 (523)
T ss_dssp HHHHHHHHHHTTCCEEESSCCTTTTSCCCSSCCCSCCCC--BCHHH-HHHGGGSSEEEESSGGGCHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHcCCeEEEecCchhcccccccccccccCCC--CCHHH-HHHhhcCcEEEEEccchHHHHHHHHHHHhCCCe
Confidence 3699999999999999886332 01111 12222 3355666777777776555556666543 3333
Q ss_pred cEE-EEECh-hhHHHHHHhhhccCCCCceeccCCCC--CHHHHHHhcccC--CCCCCEEEEEcCCCChhHHHHHHHhCCC
Q 023179 129 VRI-GVVGA-GTASIFEEVIQSSKCSLDVAFSPSKA--TGKILASELPKN--GKKKCTVLYPASAKASNEIEEGLSNRGF 202 (286)
Q Consensus 129 ~~i-~aVG~-~Ta~~L~~~~~~~~~G~~~~~~~~~~--~~e~L~~~L~~~--~~~~~rvL~~~g~~~~~~L~~~L~~~G~ 202 (286)
..+ .-+|. .|.+.|++..+.- |..+ |+.. --..+.+.|... ...|+|+.+..+..-.-.|...|.+.|+
T Consensus 314 i~~~~PiG~~~T~~~l~~la~~~--g~~~---~~~i~~er~r~~~~l~d~~~~l~GKrvaI~gd~~~~~~la~fL~elGm 388 (523)
T 3u7q_B 314 PKLNIPMGLDWTDEFLMKVSEIS--GQPI---PASLTKERGRLVDMMTDSHTWLHGKRFALWGDPDFVMGLVKFLLELGC 388 (523)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHH--CCCC---CHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHHHTTC
T ss_pred eecCCcCCHHHHHHHHHHHHHHH--CCCh---hHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHcCC
Confidence 322 23565 6777777763221 4321 1100 011223333222 1267999998655445567889999999
Q ss_pred eeEEEEe
Q 023179 203 EVVRLNT 209 (286)
Q Consensus 203 ~V~~~~v 209 (286)
+|..+.+
T Consensus 389 ~vv~v~~ 395 (523)
T 3u7q_B 389 EPVHILC 395 (523)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 8866654
No 271
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=47.20 E-value=77 Score=22.78 Aligned_cols=109 Identities=14% Similarity=0.180 Sum_probs=62.3
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC---HHHHHHHHHHHHHcC
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS---PEAGSVFLEAWKEAG 125 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS---~~av~~~~~~l~~~~ 125 (286)
+++||+.-... ....+...|++.|+++... .+..+..+.+ ....+|.|++-- .++.+ +++.+.+..
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l-~~~~~dlvi~d~~~~~~g~~-~~~~l~~~~ 73 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWA--------KNEQEAFTFL-RREKIDLVFVDVFEGEESLN-LIRRIREEF 73 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEE--------SSHHHHHHHH-TTSCCSEEEEECTTTHHHHH-HHHHHHHHC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEE--------CCHHHHHHHH-hccCCCEEEEeCCCCCcHHH-HHHHHHHHC
Confidence 46888887664 3467778888888765421 1234444555 335789888763 23443 455565543
Q ss_pred CCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 126 TPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 126 ~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
..++++++ +........+.++. |.. ++..+..+.+.|...+..
T Consensus 74 -~~~pii~ls~~~~~~~~~~~~~~---g~~-~~l~kP~~~~~l~~~i~~ 117 (142)
T 2qxy_A 74 -PDTKVAVLSAYVDKDLIINSVKA---GAV-DYILKPFRLDYLLERVKK 117 (142)
T ss_dssp -TTCEEEEEESCCCHHHHHHHHHH---TCS-CEEESSCCHHHHHHHHHH
T ss_pred -CCCCEEEEECCCCHHHHHHHHHC---Ccc-eeEeCCCCHHHHHHHHHH
Confidence 35666655 43333333332222 654 355666788888777654
No 272
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=47.13 E-value=23 Score=30.44 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=44.5
Q ss_pred cccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHH
Q 023179 42 TSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (286)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~ 115 (286)
+.+-..|.|++|.++........+...|++.|++...+... +.. ...+...| ..+..|.++...|....
T Consensus 123 I~s~~DLkGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v---~~~-~~~~~~al-~~G~vDa~~~~~p~~~~ 191 (324)
T 3ksx_A 123 LRTVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPL---YLS-PANARAAF-AAGQVDAWAIWDPWYSA 191 (324)
T ss_dssp CCSGGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEE---ECC-HHHHHHHH-HTTCCSEEEEETTHHHH
T ss_pred CCCHHHhCCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEE---eCC-HHHHHHHH-HcCCCCEEEEccHHHHH
Confidence 34446788999999865545556778889999875433222 221 23444556 35789998887776644
No 273
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=46.93 E-value=96 Score=25.64 Aligned_cols=89 Identities=10% Similarity=0.001 Sum_probs=52.5
Q ss_pred CCeEEEeCCCCc-------hHHHHHHHHhCCCcEEEeceEEeeeCC--CchHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 023179 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGP--DTDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (286)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~--~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~ 120 (286)
.++|++...... ..-+.+.|+++|..+....+....... ..+.+.+.++....+|+|+.++-..+..+++.
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 204 (291)
T 3egc_A 125 HTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTSSHRITEGAMQA 204 (291)
T ss_dssp CCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEESSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHH
Confidence 345665544432 234566778888765432222221111 13455666655567899998888777778888
Q ss_pred HHHcCCC---CcEEEEEChhh
Q 023179 121 WKEAGTP---NVRIGVVGAGT 138 (286)
Q Consensus 121 l~~~~~~---~~~i~aVG~~T 138 (286)
+.+.|+. ++.++..+..-
T Consensus 205 l~~~g~~vP~di~vvg~d~~~ 225 (291)
T 3egc_A 205 LNVLGLRYGPDVEIVSFDNLP 225 (291)
T ss_dssp HHHHTCCBTTTBEEEEESCCG
T ss_pred HHHcCCCCCCceEEEEecCch
Confidence 8887763 67777776554
No 274
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=46.80 E-value=1.1e+02 Score=24.26 Aligned_cols=110 Identities=14% Similarity=0.139 Sum_probs=63.7
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCc
Q 023179 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNV 129 (286)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~ 129 (286)
++|||.-... ....+...|+..|+.+... .+.++....+ ....+|.|+....++.+ +++.+.+. ...+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~l-~~~~~dlvilp~~~g~~-~~~~lr~~-~~~~ 69 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVT--------ESLEDGEYLM-DIRNYDLVMVSDKNALS-FVSRIKEK-HSSI 69 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEE--------SSHHHHHHHH-TTSCCSEEEECCTTHHH-HHHHHHHH-CTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEE--------CCHHHHHHHH-hcCCCCEEEeCCCCHHH-HHHHHHhC-CCCC
Confidence 3677776654 3456777888788765421 1223344445 33578999944456665 45666665 3367
Q ss_pred EEEEEC-hhhHHHHHHhhhccCCCCceeccCCCC-CHHHHHHhcccCC
Q 023179 130 RIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPKNG 175 (286)
Q Consensus 130 ~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~-~~e~L~~~L~~~~ 175 (286)
+++++. ........+.++. |.. ++..+.. +.+.|...+....
T Consensus 70 ~ii~lt~~~~~~~~~~~~~~---Ga~-~~l~Kp~~~~~~L~~~i~~~~ 113 (223)
T 2hqr_A 70 VVLVSSDNPTSEEEVHAFEQ---GAD-DYIAKPYRSIKALVARIEARL 113 (223)
T ss_dssp EEEEEESSCCHHHHHHHHHH---TCS-EEEETTCSCTHHHHHHHHHHT
T ss_pred cEEEEECCCCHHHHHHHHHc---CCC-EEEECCCCCHHHHHHHHHHHh
Confidence 776654 3333333333222 654 4566667 8888888776544
No 275
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=46.75 E-value=1.2e+02 Score=25.38 Aligned_cols=90 Identities=11% Similarity=0.015 Sum_probs=46.2
Q ss_pred CCCCCCCccccccccccccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCcc
Q 023179 26 RPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFD 104 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d 104 (286)
...+.+..|++... ....+.|++||||-.... +..+++.|.++|++|+.+- + ....+++.+.+... ..+
T Consensus 11 ~~~~~~~~~~~~m~----~~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~--r---~~~~~~~~~~~~~~-~~~ 80 (273)
T 3uf0_A 11 VDLGTENLYFQSMT----GPFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWG--R---TDGVKEVADEIADG-GGS 80 (273)
T ss_dssp ------------------CTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--S---STHHHHHHHHHHTT-TCE
T ss_pred ccccccccchhhcc----cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEc--C---HHHHHHHHHHHHhc-CCc
Confidence 34444555666533 234678999999987653 6789999999999876432 1 11122333333222 122
Q ss_pred EEE----EeCHHHHHHHHHHHHHcC
Q 023179 105 WII----ITSPEAGSVFLEAWKEAG 125 (286)
Q Consensus 105 ~Iv----FTS~~av~~~~~~l~~~~ 125 (286)
..+ +++..+++.+.+.+.+.+
T Consensus 81 ~~~~~~Dv~d~~~v~~~~~~~~~~g 105 (273)
T 3uf0_A 81 AEAVVADLADLEGAANVAEELAATR 105 (273)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred EEEEEecCCCHHHHHHHHHHHHhcC
Confidence 222 367888888866665544
No 276
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=46.42 E-value=1.2e+02 Score=26.06 Aligned_cols=88 Identities=14% Similarity=0.078 Sum_probs=52.3
Q ss_pred CeEEEeCCCCc-------hHHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHH
Q 023179 51 PKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAW 121 (286)
Q Consensus 51 ~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l 121 (286)
++|++...... ..-+.+.|+++|. ......+......+ .+.+.+.|......|+|+..+-..+...++.+
T Consensus 146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al 224 (350)
T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEHPQ-VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAA 224 (350)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHH
Confidence 46666543321 2456677888876 32222222111111 12355566555678999888888777788888
Q ss_pred HHcCCC---CcEEEEEChhhH
Q 023179 122 KEAGTP---NVRIGVVGAGTA 139 (286)
Q Consensus 122 ~~~~~~---~~~i~aVG~~Ta 139 (286)
.+.|.. ++.++.++....
T Consensus 225 ~~~G~~vP~di~vvg~d~~~~ 245 (350)
T 3h75_A 225 RELGRKPGTDLLFSGVNSSPE 245 (350)
T ss_dssp HHTTCCBTTTBEEEEESCCHH
T ss_pred HHcCCCCCCCeEEEecCCCHH
Confidence 888764 677888875543
No 277
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=46.41 E-value=12 Score=32.65 Aligned_cols=71 Identities=18% Similarity=0.191 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCC--------hhHHHHHHHhCCCeeEEEEeeeeecCCCCc------------------------------
Q 023179 178 KCTVLYPASAKA--------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVD------------------------------ 219 (286)
Q Consensus 178 ~~rvL~~~g~~~--------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~------------------------------ 219 (286)
.-|||++-|.-. .+.+.+.|++.|.+|+.+.+|.....+...
T Consensus 22 ~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~f~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (280)
T 4gi5_A 22 SMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLYAMRWKAGYDADDSGAPPVGEFWRPTLDSKQAFAQGTQSA 101 (280)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTTTCCCSCCGGGSSSSCSSSSCCHHHHHHHHHHHTCSCH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEccccCCCCcCCHHHhcccccccccChhhHHHHHhhcCCCcH
Confidence 357887765432 345678899999999999999865432110
Q ss_pred --HHHHHHcCCCCEEEEeC-------hHHHHHHHHHhc
Q 023179 220 --QTVLKQALSIPVVAVAS-------PSAVRSWVNLIS 248 (286)
Q Consensus 220 --~~~~~~~~~~d~IvftS-------~sav~~~~~~~~ 248 (286)
....+.+...|.|||.+ |..++.|++.+-
T Consensus 102 dv~~~~~~l~~aD~iv~~~P~~w~~~Pa~lK~~iDrv~ 139 (280)
T 4gi5_A 102 DIVAEQEKLLWADTVIFQFPLWWFSMPAIMKGWIDRVY 139 (280)
T ss_dssp HHHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCEEEEEeccccccCcHHHHHHHHHhc
Confidence 11112235688888876 689999999864
No 278
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=45.95 E-value=53 Score=28.05 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=49.9
Q ss_pred CCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-HHHHHHHHHHHHH
Q 023179 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-PEAGSVFLEAWKE 123 (286)
Q Consensus 50 g~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS-~~av~~~~~~l~~ 123 (286)
.++|.+..+.. ..+.+.+.|+++|+.+.....+... ..+.......+.. ...|.|++.+ ...+..+++.+.+
T Consensus 135 ~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~-~~~~~~~~~~l~~-~~~dav~~~~~~~~a~~~~~~~~~ 212 (362)
T 3snr_A 135 VKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARP-DTSVAGQALKLVA-ANPDAILVGASGTAAALPQTTLRE 212 (362)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT-CSCCHHHHHHHHH-HCCSEEEEECCHHHHHHHHHHHHH
T ss_pred CCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCC-CCCHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHHH
Confidence 46676664332 2345677888899886543333221 1233332233322 4678888887 6666677888888
Q ss_pred cCCCCcEEEEEChhhHHHH
Q 023179 124 AGTPNVRIGVVGAGTASIF 142 (286)
Q Consensus 124 ~~~~~~~i~aVG~~Ta~~L 142 (286)
.++....+...|-.....+
T Consensus 213 ~g~~~p~i~~~g~~~~~~~ 231 (362)
T 3snr_A 213 RGYNGLIYQTHGAASMDFI 231 (362)
T ss_dssp TTCCSEEEECGGGCSHHHH
T ss_pred cCCCccEEeccCcCcHHHH
Confidence 7775333333343333333
No 279
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}
Probab=45.90 E-value=1e+02 Score=27.09 Aligned_cols=167 Identities=16% Similarity=0.161 Sum_probs=86.1
Q ss_pred CeEEEeCCCCchHHHHHHHHh-CCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCCC
Q 023179 51 PKVVVTRERGKNGKLIKALAK-HRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTPN 128 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~-~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~~~~~~ 128 (286)
|+|+++..........+.|.+ .|+++...+- . .+.+++ .+.+.++|.++..+...+ +.+++.+... +
T Consensus 1 mki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~-~~~~~~---~~~~~~~d~~i~~~~~~~~~~~l~~~~~~---~ 69 (331)
T 1xdw_A 1 MKVLCYGVRDVELPIFEACNKEFGYDIKCVPD----Y-LNTKET---AEMAAGFDAVILRGNCFANKQNLDIYKKL---G 69 (331)
T ss_dssp CEEEECSCCTTTHHHHHHHGGGTCCEEEECSC----C-SCSHHH---HHTTTTCSEEEECTTCCBCHHHHHHHHHH---T
T ss_pred CEEEEEecCccCHHHHHHHHHhcCeEEEECCC----C-CCHHHH---HHHhcCCeEEEEeCCCCCCHHHHhhCccc---C
Confidence 478887544444555556643 4655543221 1 111322 234678999887642221 2244555432 2
Q ss_pred cEEEE-EChh----hHHHHHHhhhccCCCCceeccCCCCCHHHHHHh----c---cc---------------C-------
Q 023179 129 VRIGV-VGAG----TASIFEEVIQSSKCSLDVAFSPSKATGKILASE----L---PK---------------N------- 174 (286)
Q Consensus 129 ~~i~a-VG~~----Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~----L---~~---------------~------- 174 (286)
+|+++ .|.+ -.+++++. |+.+..+|. .+.+.+++. + .+ +
T Consensus 70 Lk~I~~~~~G~d~id~~~~~~~------gI~v~n~p~-~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~ 142 (331)
T 1xdw_A 70 VKYILTRTAGTDHIDKEYAKEL------GFPMAFVPR-YSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSK 142 (331)
T ss_dssp CCEEEESSSCCTTBCHHHHHHT------TCCEECCCC-CCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCC
T ss_pred ceEEEEccccccccCHHHHHhC------CcEEEeCCC-CCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCcc
Confidence 44443 2332 23566777 998877664 343332211 1 10 1
Q ss_pred CCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCC-----cHHHHHHcCCCCEEEEeChH
Q 023179 175 GKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-----DQTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 175 ~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~-----~~~~~~~~~~~d~IvftS~s 238 (286)
...|+++.+++-..-...+...|+..|++|.- |.+...... .....+.+...|+|++.-|.
T Consensus 143 ~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~---~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~ 208 (331)
T 1xdw_A 143 EVRNCTVGVVGLGRIGRVAAQIFHGMGATVIG---EDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPY 208 (331)
T ss_dssp CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE---ECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE---ECCCccHHHHhccccCCHHHHHhhCCEEEEecCC
Confidence 11566888887665666788999999987644 443322110 00111113467888887554
No 280
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=45.68 E-value=76 Score=27.46 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=42.6
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEe--eeCCCchHHHHHHhcCCCccEEEEeCH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQH--AQGPDTDRLSSVLNADTIFDWIIITSP 111 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~--~~~~~~~~l~~~l~~~~~~d~IvFTS~ 111 (286)
.|.+|++..+.- ..+...++..|+++..+|+-.. ....|.+.+++.+. ..+...|+++++
T Consensus 108 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~-~~~~~~v~i~~p 169 (391)
T 3dzz_A 108 PGDQILVQEPVY--NMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLA-TPSVRMMVFCNP 169 (391)
T ss_dssp TTCEEEECSSCC--HHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHT-STTEEEEEEESS
T ss_pred CCCeEEECCCCc--HHHHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHh-ccCceEEEEECC
Confidence 477899888763 4466777889999999998521 11135677888773 246788888887
No 281
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=45.39 E-value=37 Score=33.38 Aligned_cols=92 Identities=20% Similarity=0.194 Sum_probs=58.0
Q ss_pred CCCCCCeEEEeCC--CC----chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-H-----
Q 023179 46 ASNSNPKVVVTRE--RG----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-A----- 113 (286)
Q Consensus 46 ~~l~g~~VLitR~--~~----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~-a----- 113 (286)
..+.|++|+|.-. .+ +...+.+.|++.|++|..+-.-. ....|. .+.. . ....||.||+.... +
T Consensus 525 ~~l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~-g~~vD~-t~~~-~-~s~~fDAVvlPGG~~g~~~~~ 600 (688)
T 2iuf_A 525 AKLDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERX-ANNVDE-TYSA-S-DAVQFDAVVVADGAEGLFGAD 600 (688)
T ss_dssp SCCTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSC-CTTCCE-ESTT-C-CGGGCSEEEECTTCGGGCCTT
T ss_pred CCCCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccC-Cccccc-chhc-C-CccccCeEEecCCCccccccc
Confidence 4577899988876 32 34578889999999998776521 111221 1111 1 23469999998772 3
Q ss_pred --------------------HHHHHHHHHHcCCCCcEEEEEChhhHHHHHHh
Q 023179 114 --------------------GSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (286)
Q Consensus 114 --------------------v~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~ 145 (286)
+..|+....+ .+..|++||.+.. +|.++
T Consensus 601 ~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~---~gKpIaAIc~ap~-vL~~a 648 (688)
T 2iuf_A 601 SFTVEPSAGSGASTLYPAGRPLNILLDAFR---FGKTVGALGSGSD-ALESG 648 (688)
T ss_dssp TTTCCCCTTSCCCSSSCTTHHHHHHHHHHH---HTCEEEEEGGGHH-HHHHT
T ss_pred ccccccccccchhhcccChHHHHHHHHHHH---cCCEEEEECchHH-HHHHc
Confidence 2223333322 2788999999875 88888
No 282
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=45.38 E-value=29 Score=28.46 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=44.7
Q ss_pred CCCEEEEEcCCCC-------hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhcc
Q 023179 177 KKCTVLYPASAKA-------SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISD 249 (286)
Q Consensus 177 ~~~rvL~~~g~~~-------~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~ 249 (286)
.+++|+|+..+.+ -..+.+.|+..|+++..+.+.+ ...+...+.+...|.|+++-.++. .+++.+.+
T Consensus 26 ~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~-----~~~~~~~~~l~~ad~I~l~GG~~~-~l~~~L~~ 99 (206)
T 3l4e_A 26 QGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT-----ESLGEITTKLRKNDFIYVTGGNTF-FLLQELKR 99 (206)
T ss_dssp TTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT-----SCHHHHHHHHHHSSEEEECCSCHH-HHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC-----CChHHHHHHHHhCCEEEECCCCHH-HHHHHHHH
Confidence 4689998864443 2457889999999876655433 222333334568999999987777 45666655
Q ss_pred c
Q 023179 250 T 250 (286)
Q Consensus 250 ~ 250 (286)
.
T Consensus 100 ~ 100 (206)
T 3l4e_A 100 T 100 (206)
T ss_dssp H
T ss_pred C
Confidence 4
No 283
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=45.21 E-value=47 Score=28.64 Aligned_cols=115 Identities=16% Similarity=0.067 Sum_probs=66.0
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCC-c-hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPD-T-DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~-~-~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~ 123 (286)
....|++|.+.--- .+.+.+.+.+.++. +++..|.+. . +...+.+ +...|++++|...=+.-=++.+-+
T Consensus 137 ~~~~g~kV~vIG~f----P~i~~~~~~~~~l~---V~E~~p~~g~~p~~~~~~~--lp~~D~viiTgstlvN~Tl~~lL~ 207 (270)
T 3l5o_A 137 NEVKGKKVGVVGHF----PHLESLLEPICDLS---ILEWSPEEGDYPLPASEFI--LPECDYVYITCASVVDKTLPRLLE 207 (270)
T ss_dssp TTTTTSEEEEESCC----TTHHHHHTTTSEEE---EEESSCCTTCEEGGGHHHH--GGGCSEEEEETHHHHHTCHHHHHH
T ss_pred cccCCCEEEEECCc----hhHHHHHhcCCCEE---EEECCCCCCCCChhHHHHh--hccCCEEEEEeehhhcCCHHHHHh
Confidence 34568999988643 23455666666544 334444432 1 2222223 577999999999877654444444
Q ss_pred cCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 124 AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 124 ~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
.-.....++.+||.|-- +-..|++ |+...-.-.-.+.+.+.+.+.+
T Consensus 208 ~~~~a~~vvl~GPStp~-~P~lf~~---Gv~~laG~~V~d~~~~~~~i~~ 253 (270)
T 3l5o_A 208 LSRNARRITLVGPGTPL-APVLFEH---GLQELSGFMVKDNARAFRIVAG 253 (270)
T ss_dssp HTTTSSEEEEESTTCCC-CGGGGGT---TCSEEEEEEESCHHHHHHHHTT
T ss_pred hCCCCCEEEEECCCchh-hHHHHhc---CcCEEEEEEEcCHHHHHHHHhc
Confidence 33345678899998842 3334332 6654222122456777766654
No 284
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=45.10 E-value=65 Score=27.45 Aligned_cols=145 Identities=12% Similarity=0.083 Sum_probs=78.9
Q ss_pred CCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCC-CCCHHHHHHhcccCCCCC
Q 023179 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPS-KATGKILASELPKNGKKK 178 (286)
Q Consensus 101 ~~~d~IvFT-S~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~-~~~~e~L~~~L~~~~~~~ 178 (286)
...|.||-. +..........+.+. +++++..+.. . +... .. ..-..+.+. ...+..+++.|.+. ..
T Consensus 68 ~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~--~-~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~~~--g~ 135 (362)
T 3snr_A 68 SKADVIMGSSVTPPSVAISNVANEA---QIPHIALAPL--P-ITPE---RA-KWSVVMPQPIPIMGKVLYEHMKKN--NV 135 (362)
T ss_dssp SCCSEEEECSSHHHHHHHHHHHHHH---TCCEEESSCC--C-CCTT---TT-TTEEECSCCHHHHHHHHHHHHHHT--TC
T ss_pred cCceEEEcCCCcHHHHHHHHHHHHc---CccEEEecCC--c-cccC---CC-CcEEecCCChHHHHHHHHHHHHhc--CC
Confidence 468999864 344444445555543 5666666543 1 1111 00 111112222 12244566666553 34
Q ss_pred CEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeC-hHHHHHHHHHhccc
Q 023179 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLISDT 250 (286)
Q Consensus 179 ~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS-~sav~~~~~~~~~~ 250 (286)
+|+.++..+.. .+.+.+.|++.|+++.....|... .......+..+ ..+|+|++.+ ...+-.++..+.+.
T Consensus 136 ~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~ 213 (362)
T 3snr_A 136 KTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARP--DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRER 213 (362)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT--CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHT
T ss_pred CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCC--CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHc
Confidence 78888754432 346778899999987665555432 22222223322 4789999888 77777788777765
Q ss_pred cCCCceEEEe
Q 023179 251 EQWSNSVACI 260 (286)
Q Consensus 251 ~~~~~~iv~I 260 (286)
+. ..+++.+
T Consensus 214 g~-~~p~i~~ 222 (362)
T 3snr_A 214 GY-NGLIYQT 222 (362)
T ss_dssp TC-CSEEEEC
T ss_pred CC-CccEEec
Confidence 42 4555544
No 285
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=45.08 E-value=66 Score=28.70 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=47.7
Q ss_pred HHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeCh-------HHHHHHHHHhccccC-CCceEEEeC--
Q 023179 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLISDTEQ-WSNSVACIG-- 261 (286)
Q Consensus 192 ~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~-------sav~~~~~~~~~~~~-~~~~iv~IG-- 261 (286)
.+.+.|.+.|++|+.+.+.+. ......+.+..+|.|+|.|| ..++.|++.+..... .+.+++++|
T Consensus 276 ~i~~~l~~~g~~v~~~~l~~~-----~~~~~~~~l~~~D~iiigsP~y~~~~~~~~k~fld~l~~~~~~~~K~~~~~~t~ 350 (414)
T 2q9u_A 276 ALLDGARSTGCETVLLEMTSS-----DITKVALHTYDSGAVAFASPTLNNTMMPSVAAALNYVRGLTLIKGKPAFAFGAF 350 (414)
T ss_dssp HHHHHHHHTTCEEEEEEGGGC-----CHHHHHHHHHTCSEEEEECCCBTTBCCHHHHHHHHHHHHHTTTTTSBEEEEEEE
T ss_pred HHHHHHHhCCCeEEEEEcCcC-----CHHHHHHHHHhCCEEEEEcCccCcCchHHHHHHHHHHHhhcccCCCEEEEEEec
Confidence 466777778877655544321 12233334568999999986 578999988653222 233433332
Q ss_pred -------HHHHHHHHH-cCCCeE
Q 023179 262 -------ETTASAAKR-LGLKNV 276 (286)
Q Consensus 262 -------~~Ta~~l~~-~G~~~v 276 (286)
....+.++. +|++.+
T Consensus 351 g~~~~a~~~l~~~l~~~~g~~~~ 373 (414)
T 2q9u_A 351 GWSNRAVPDIVAELRDGCKADVY 373 (414)
T ss_dssp SSSCCHHHHHHHHHHHTSCCBCC
T ss_pred CCCchhHHHHHHHHHhhcCcEEc
Confidence 345556667 787643
No 286
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=45.07 E-value=92 Score=24.80 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHcCCC-CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcC-C
Q 023179 110 SPEAGSVFLEAWKEAGTP-NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPAS-A 187 (286)
Q Consensus 110 S~~av~~~~~~l~~~~~~-~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g-~ 187 (286)
|+..++..-+.+...+.+ ++. +..|.... .+... ..+..++.....+.+ +++.+.+...+|.++++... .
T Consensus 86 s~~~~~~a~~~~~~~g~~~~v~-~~~~d~~~-~~~~~-----~~~D~v~~~~~~~~~-~l~~~~~~LkpgG~lv~~~~~~ 157 (204)
T 3njr_A 86 RADRIENIQKNIDTYGLSPRMR-AVQGTAPA-ALADL-----PLPEAVFIGGGGSQA-LYDRLWEWLAPGTRIVANAVTL 157 (204)
T ss_dssp CHHHHHHHHHHHHHTTCTTTEE-EEESCTTG-GGTTS-----CCCSEEEECSCCCHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred CHHHHHHHHHHHHHcCCCCCEE-EEeCchhh-hcccC-----CCCCEEEECCcccHH-HHHHHHHhcCCCcEEEEEecCc
Confidence 566666655555555555 333 34455432 12111 144554543334455 66666665556677776543 3
Q ss_pred CChhHHHHHHHhCCCeeEEEEeeeeecCCC
Q 023179 188 KASNEIEEGLSNRGFEVVRLNTYTTEPVHH 217 (286)
Q Consensus 188 ~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~ 217 (286)
.....+.+.|++.|+++..+.+++..+...
T Consensus 158 ~~~~~~~~~l~~~g~~i~~i~~~~~~~~~~ 187 (204)
T 3njr_A 158 ESETLLTQLHARHGGQLLRIDIAQAEPLGR 187 (204)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEEEEEEEETT
T ss_pred ccHHHHHHHHHhCCCcEEEEEeecccccCc
Confidence 345567788999999999999988877654
No 287
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=45.01 E-value=46 Score=28.80 Aligned_cols=84 Identities=11% Similarity=0.024 Sum_probs=50.6
Q ss_pred CCeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE-eCHHHHHHHHHHHHH
Q 023179 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAWKE 123 (286)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvF-TS~~av~~~~~~l~~ 123 (286)
.++|.+..+... .+.+.+.|+++|+++.....+... ..+.......+.. ...|.|++ .+...+..+++.+.+
T Consensus 151 ~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~-~~~dai~~~~~~~~a~~~~~~~~~ 228 (375)
T 4evq_A 151 LKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAFP-DVEFQSALAEIAS-LKPDCVYAFFSGGGALKFIKDYAA 228 (375)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTT-CCCCHHHHHHHHH-HCCSEEEEECCTHHHHHHHHHHHH
T ss_pred CcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCCC-CccHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHHH
Confidence 466766644331 356778888999987543333221 1233333333322 35788888 677777778888888
Q ss_pred cCCCCcEEEEECh
Q 023179 124 AGTPNVRIGVVGA 136 (286)
Q Consensus 124 ~~~~~~~i~aVG~ 136 (286)
.++. ++++..|-
T Consensus 229 ~g~~-vp~~~~~~ 240 (375)
T 4evq_A 229 ANLG-IPLWGPGF 240 (375)
T ss_dssp TTCC-CCEEEEGG
T ss_pred cCCC-ceEEecCc
Confidence 8775 66776653
No 288
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=44.72 E-value=51 Score=27.25 Aligned_cols=87 Identities=9% Similarity=0.076 Sum_probs=46.5
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEE--EeCHHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWII--ITSPEAGSVFLEAW 121 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~-~~~d~Iv--FTS~~av~~~~~~l 121 (286)
..+.+++||||-.... +..+++.|.+.|++++.+- +... ...+.+.+.+... ....++. ++++.+++.+++.+
T Consensus 3 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 79 (264)
T 3i4f_A 3 LGRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTY--HSDT-TAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEA 79 (264)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE--SSCH-HHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred cccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEc--CCCh-HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 3456899999987653 6789999999999876431 1100 0012222222111 1122222 47888888888776
Q ss_pred HHc-CCCCcEEEEEC
Q 023179 122 KEA-GTPNVRIGVVG 135 (286)
Q Consensus 122 ~~~-~~~~~~i~aVG 135 (286)
.+. +.-+.-|.+.|
T Consensus 80 ~~~~g~id~lv~~Ag 94 (264)
T 3i4f_A 80 MSHFGKIDFLINNAG 94 (264)
T ss_dssp HHHHSCCCEEECCCC
T ss_pred HHHhCCCCEEEECCc
Confidence 543 22233344444
No 289
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=44.69 E-value=14 Score=30.91 Aligned_cols=57 Identities=19% Similarity=0.099 Sum_probs=33.9
Q ss_pred CCeEEEeCCCCc--------hH----HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 023179 50 NPKVVVTRERGK--------NG----KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 50 g~~VLitR~~~~--------~~----~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
.++||+.-..+. +. .+.+.+++.|.++..+-+.. ..|.+ +..+.+...|.|||.+|.
T Consensus 25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~---~~Dv~---~~~~~l~~aD~iv~~~P~ 93 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQ---GYDIE---SEIENYLWADTIIYQMPA 93 (218)
T ss_dssp CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGG---CCCHH---HHHHHHHHCSEEEEEEEC
T ss_pred CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCC---ccCHH---HHHHHHHhCCEEEEECCh
Confidence 467777644431 23 34455566788887655542 22333 333345678999999884
No 290
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=44.63 E-value=10 Score=30.70 Aligned_cols=51 Identities=18% Similarity=0.224 Sum_probs=30.3
Q ss_pred hHHHHHHHHh---CCCcEEEeceEEeeeCC--C------------chHHHHHHhcCCCccEEEEeCHH
Q 023179 62 NGKLIKALAK---HRIDCLELPLIQHAQGP--D------------TDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 62 ~~~l~~~L~~---~G~~v~~~P~~~~~~~~--~------------~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
+..+.+.+.+ .|.++..+-++.....+ + .+.+.+..+.+...|.|||.+|.
T Consensus 16 t~~l~~~~~~~~~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~ 83 (196)
T 3lcm_A 16 NAEILKQVQTNLSKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIFPI 83 (196)
T ss_dssp HHHHHHHHHHHSCTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEECch
Confidence 4566666554 58888777666543211 0 12344444455778999998873
No 291
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=44.51 E-value=79 Score=26.62 Aligned_cols=17 Identities=6% Similarity=0.007 Sum_probs=10.4
Q ss_pred CCCCEEEEeChHHHHHH
Q 023179 227 LSIPVVAVASPSAVRSW 243 (286)
Q Consensus 227 ~~~d~IvftS~sav~~~ 243 (286)
.++|.|++.+..+...+
T Consensus 68 ~~vDgII~~~~~~~~~~ 84 (302)
T 2qh8_A 68 ENPDVLVGIATPTAQAL 84 (302)
T ss_dssp TCCSEEEEESHHHHHHH
T ss_pred CCCCEEEECChHHHHHH
Confidence 46777777766544433
No 292
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=44.30 E-value=21 Score=30.28 Aligned_cols=66 Identities=9% Similarity=0.047 Sum_probs=36.4
Q ss_pred CCCCCeEEEeCCC----CchHH----HHHHHHhCCCcEEEeceEEeeeCC-C---chHHHHHHhcCCCccEEEEeCHH
Q 023179 47 SNSNPKVVVTRER----GKNGK----LIKALAKHRIDCLELPLIQHAQGP-D---TDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 47 ~l~g~~VLitR~~----~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~-~---~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
+-..++||+.-.. ..+.. +.+.+++.|+++..+-+....... + .+.+....+.+...|.|||.||.
T Consensus 31 ~~~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~ 108 (247)
T 2q62_A 31 STHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPE 108 (247)
T ss_dssp CCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEEC
T ss_pred cCCCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCC
Confidence 3345777776433 23334 444556678888777665432110 1 12344444445667888888864
No 293
>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*
Probab=44.27 E-value=1.2e+02 Score=25.46 Aligned_cols=150 Identities=15% Similarity=0.158 Sum_probs=79.5
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWK 122 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv--FTS~~av~~~~~~l~ 122 (286)
-.|.||.+|||-... -...+++.|.+.|++|+.+- +.. ++.+.+++..+.-....++. +|+...++.+++...
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~--r~~--~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~ 78 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFA--RHA--PDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTI 78 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--SSC--CCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEE--CCc--ccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHH
Confidence 468899999997764 35788999999999887542 111 12222322222222232222 378999988877665
Q ss_pred Hc-CCCCcEEEEEC-------hhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCC-----
Q 023179 123 EA-GTPNVRIGVVG-------AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKA----- 189 (286)
Q Consensus 123 ~~-~~~~~~i~aVG-------~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~----- 189 (286)
+. +.-++-+-..| +.+.+..++.+ .+.+...-......+..|.+ .+.+++.+.+-.+
T Consensus 79 ~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~-------~vNl~g~~~~~~~~~p~m~~---~~G~IVnisS~~~~~~~~ 148 (258)
T 4gkb_A 79 ATFGRLDGLVNNAGVNDGIGLDAGRDAFVASL-------ERNLIHYYAMAHYCVPHLKA---TRGAIVNISSKTAVTGQG 148 (258)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTSCHHHHHHHH-------HHHTHHHHHHHHHHHHHHHH---HTCEEEEECCTHHHHCCS
T ss_pred HHhCCCCEEEECCCCCCCCCccCCHHHHHHHH-------HHHhHHHHHHHHHHHHHHHh---cCCeEEEEeehhhccCCC
Confidence 43 32112122222 12333333332 11111111123333444433 2367888766543
Q ss_pred ---------------hhHHHHHHHhCCCeeEEEEe
Q 023179 190 ---------------SNEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 190 ---------------~~~L~~~L~~~G~~V~~~~v 209 (286)
...|...|..+|++|..+..
T Consensus 149 ~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~P 183 (258)
T 4gkb_A 149 NTSGYCASKGAQLALTREWAVALREHGVRVNAVIP 183 (258)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEec
Confidence 22566777788888877655
No 294
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=44.05 E-value=65 Score=25.93 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=33.3
Q ss_pred cCCCCEEEEeChHHHHHHHHH-hccccCCCceEE--EeCHHHHHHHHHcCCCeEEeC
Q 023179 226 ALSIPVVAVASPSAVRSWVNL-ISDTEQWSNSVA--CIGETTASAAKRLGLKNVYYP 279 (286)
Q Consensus 226 ~~~~d~IvftS~sav~~~~~~-~~~~~~~~~~iv--~IG~~Ta~~l~~~G~~~v~~~ 279 (286)
+...|+|+.+.+....+..-. .-.......+++ +-++...+.++++|...++.|
T Consensus 63 i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia~~~~~~~~~~l~~~G~d~vi~p 119 (218)
T 3l4b_C 63 VSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVSLVNDPGNMEIFKKMGITTVLNL 119 (218)
T ss_dssp CCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEEECCCSGGGHHHHHHHTCEECCCH
T ss_pred cccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEeCcchHHHHHHCCCCEEECH
Confidence 468999988877665544322 211111133444 447888889999998766655
No 295
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=44.00 E-value=85 Score=26.27 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=27.1
Q ss_pred HHHHHHHhCCC---eeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeChHHHHHHH
Q 023179 192 EIEEGLSNRGF---EVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASPSAVRSWV 244 (286)
Q Consensus 192 ~L~~~L~~~G~---~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS~sav~~~~ 244 (286)
.+.+.|+++|. ++.. .++.+..........++.+ .++|.|++.+..+.+.+.
T Consensus 22 gi~~~l~~~gy~g~~v~l-~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~~~~~~~~ 78 (295)
T 3lft_A 22 GIQDGLAEEGYKDDQVKI-DFMNSEGDQSKVATMSKQLVANGNDLVVGIATPAAQGLA 78 (295)
T ss_dssp HHHHHHHHTTCCGGGEEE-EEEECTTCHHHHHHHHHHHTTSSCSEEEEESHHHHHHHH
T ss_pred HHHHHHHHcCCCCCceEE-EEecCCCCHHHHHHHHHHHHhcCCCEEEECCcHHHHHHH
Confidence 46677888887 5432 2222222111111223332 579999988876655433
No 296
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=44.00 E-value=1.3e+02 Score=29.49 Aligned_cols=108 Identities=13% Similarity=0.213 Sum_probs=66.3
Q ss_pred CCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHH---------HHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCCC
Q 023179 161 KATGKILASELPKNGKKKCTVLYPASAKASNEIEE---------GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSI 229 (286)
Q Consensus 161 ~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~---------~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~ 229 (286)
..+.+.+-+.+.+. ..+|++-+-...-.++-. .|+..|++|..+-+ ....+++.+. ..++
T Consensus 588 ~ls~eEi~~~i~e~---kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGv------dVPpEeIVeAA~EedA 658 (763)
T 3kp1_A 588 ILSEDEIREDIEKT---PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGT------SVPVEKLVDAAIELKA 658 (763)
T ss_dssp CCCHHHHHHHHHHS---CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCS------SBCHHHHHHHHHHTTC
T ss_pred CCCHHHHHhhhhcc---CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCC------CCCHHHHHHHHHHcCC
Confidence 34566665556553 358888765555444444 58999988855443 1223344433 2689
Q ss_pred CEEEEeCh--------HHHHHHHHHhccccCC-CceEEEeCH-HHHHHHHHcCCCeEE
Q 023179 230 PVVAVASP--------SAVRSWVNLISDTEQW-SNSVACIGE-TTASAAKRLGLKNVY 277 (286)
Q Consensus 230 d~IvftS~--------sav~~~~~~~~~~~~~-~~~iv~IG~-~Ta~~l~~~G~~~v~ 277 (286)
|+|.+++- ..++.+.+.+++.+.. .+++++-|. .+.+.+++.|....+
T Consensus 659 DVVGLSsLLTt~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~tqd~AkeIGADa~f 716 (763)
T 3kp1_A 659 DAILASTIISHDDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVTPEVAVKQGVDAGF 716 (763)
T ss_dssp SEEEEECCCCGGGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCCHHHHHTTTCSEEE
T ss_pred CEEEEeccccCchhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHcCCcEEE
Confidence 99999853 3445666777665443 367888885 456667788876543
No 297
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}
Probab=43.91 E-value=70 Score=26.55 Aligned_cols=34 Identities=18% Similarity=0.081 Sum_probs=25.1
Q ss_pred CCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEE
Q 023179 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLE 78 (286)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~ 78 (286)
...+.|++||||-.... ...+++.|.+.|++|..
T Consensus 16 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~ 50 (253)
T 2nm0_A 16 PRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAI 50 (253)
T ss_dssp ----CCCEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEE
Confidence 35677999999987653 57899999999998764
No 298
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=43.79 E-value=17 Score=30.47 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=43.9
Q ss_pred HHHHHHHHhC-CCcEEEeceEEeeeCCC----chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 63 GKLIKALAKH-RIDCLELPLIQHAQGPD----TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 63 ~~l~~~L~~~-G~~v~~~P~~~~~~~~~----~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
.-+.+.|+++ |+.+... +. ...+ .+.+.+.|.....+|+|+.++-..+..+++.+.+.|..++.++..+..
T Consensus 155 ~gf~~~l~~~~g~~~~~~--~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~di~vig~d~~ 230 (293)
T 3l6u_A 155 RGFLKGIENEPTLSIVDS--VS--GNYDPVTSERVMRQVIDSGIPFDAVYCHNDDIAMGVLEALKKAKISGKIVVGIDGN 230 (293)
T ss_dssp HHHHHHHTTCTTEEEEEE--EE--CTTCHHHHHHHHHHHHHTTCCCSEEEESSHHHHHHHHHHHHHTTCCCCEEEEEECC
T ss_pred HHHHHHHHhCCCcEEeee--cc--CCCCHHHHHHHHHHHHHhCCCCCEEEECCchHHHHHHHHHHhCCCCCeEEEEecCC
Confidence 3455667677 6655432 11 1112 123555564456789999988888777888888888765566655543
No 299
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=43.73 E-value=1.4e+02 Score=24.72 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=44.0
Q ss_pred CeEEEeCCCC-chHHHHHHHHhC-CCcEEEece------------EEeeeC--CCchHHHHHHhcCCCccEEEEeCH---
Q 023179 51 PKVVVTRERG-KNGKLIKALAKH-RIDCLELPL------------IQHAQG--PDTDRLSSVLNADTIFDWIIITSP--- 111 (286)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~-G~~v~~~P~------------~~~~~~--~~~~~l~~~l~~~~~~d~IvFTS~--- 111 (286)
|+||||-..+ -+..+.+.|.+. |.+|.-+-- ++.... .|.+.+.+.+ ...|.||....
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~---~~~d~vi~~a~~~~ 77 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAF---KGMDTVVFIPSIIH 77 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHT---TTCSEEEECCCCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHH---hCCCEEEEeCCCCc
Confidence 5799998765 356777888887 888765411 122221 1334455444 57899998865
Q ss_pred ------HHHHHHHHHHHHcC
Q 023179 112 ------EAGSVFLEAWKEAG 125 (286)
Q Consensus 112 ------~av~~~~~~l~~~~ 125 (286)
.+.+.+++.+.+.+
T Consensus 78 ~~~~~~~~~~~l~~aa~~~g 97 (289)
T 3e48_A 78 PSFKRIPEVENLVYAAKQSG 97 (289)
T ss_dssp SHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHcC
Confidence 34555666666654
No 300
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=43.70 E-value=1e+02 Score=23.20 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=58.3
Q ss_pred eCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEc-CC
Q 023179 109 TSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPA-SA 187 (286)
Q Consensus 109 TS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~-g~ 187 (286)
.|+..++..-+.+...+.+++.+ ..|.... .+.+. .+..++.....+.+.+++.+.+. ++..+++.. ..
T Consensus 65 ~~~~~~~~a~~~~~~~~~~~~~~-~~~d~~~-~~~~~------~~D~i~~~~~~~~~~~l~~~~~~--~gG~l~~~~~~~ 134 (183)
T 2yxd_A 65 YLDGAIEVTKQNLAKFNIKNCQI-IKGRAED-VLDKL------EFNKAFIGGTKNIEKIIEILDKK--KINHIVANTIVL 134 (183)
T ss_dssp CSHHHHHHHHHHHHHTTCCSEEE-EESCHHH-HGGGC------CCSEEEECSCSCHHHHHHHHHHT--TCCEEEEEESCH
T ss_pred CCHHHHHHHHHHHHHcCCCcEEE-EECCccc-cccCC------CCcEEEECCcccHHHHHHHHhhC--CCCEEEEEeccc
Confidence 36777776666666665544444 4455443 33332 45554542225667777777766 556766654 44
Q ss_pred CChhHHHHHHHhCCCeeEEEEeeeeec
Q 023179 188 KASNEIEEGLSNRGFEVVRLNTYTTEP 214 (286)
Q Consensus 188 ~~~~~L~~~L~~~G~~V~~~~vY~~~~ 214 (286)
.....+.+.|++.|+.+..+.......
T Consensus 135 ~~~~~~~~~l~~~g~~~~~~~~~~~~~ 161 (183)
T 2yxd_A 135 ENAAKIINEFESRGYNVDAVNVFISYA 161 (183)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccHHHHHHHHHHcCCeEEEEEeeeehh
Confidence 445678899999998887776554443
No 301
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=43.67 E-value=76 Score=26.60 Aligned_cols=74 Identities=9% Similarity=-0.036 Sum_probs=46.1
Q ss_pred CCCCCCeEEEeCCC---CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRER---GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (286)
Q Consensus 46 ~~l~g~~VLitR~~---~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv--FTS~~av~~~~~~ 120 (286)
..+.|++||||-.. +-+..+++.|.++|++|+.+-.- ...+.+.+..+......++. +++..+++.+++.
T Consensus 22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~-----~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 96 (280)
T 3nrc_A 22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVG-----QFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVE 96 (280)
T ss_dssp CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECT-----TCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCc-----hHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHH
Confidence 45779999999854 24678999999999987643211 11123333222223333322 4788999988887
Q ss_pred HHHc
Q 023179 121 WKEA 124 (286)
Q Consensus 121 l~~~ 124 (286)
+.+.
T Consensus 97 ~~~~ 100 (280)
T 3nrc_A 97 LGKV 100 (280)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 302
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=43.64 E-value=84 Score=25.93 Aligned_cols=75 Identities=15% Similarity=0.009 Sum_probs=46.1
Q ss_pred CCCCCCeEEEeCCC--CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRER--GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLE 119 (286)
Q Consensus 46 ~~l~g~~VLitR~~--~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv----FTS~~av~~~~~ 119 (286)
..+.|++||||-.. +-...+++.|.++|++|+.+- ... ...+.+.+.+......+..+ +++..+++.+++
T Consensus 18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~---r~~-~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~ 93 (266)
T 3o38_A 18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISD---YHE-RRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALIT 93 (266)
T ss_dssp STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEE---SCH-HHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEec---CCH-HHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHH
Confidence 35779999999874 457899999999999876431 110 01122333332222222322 378889988888
Q ss_pred HHHHc
Q 023179 120 AWKEA 124 (286)
Q Consensus 120 ~l~~~ 124 (286)
.+.+.
T Consensus 94 ~~~~~ 98 (266)
T 3o38_A 94 QTVEK 98 (266)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77553
No 303
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=43.57 E-value=93 Score=22.72 Aligned_cols=111 Identities=8% Similarity=0.099 Sum_probs=63.4
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCC--cEEEeceEEeeeCCCchHHHHHHh--------cCCCccEEEEe----CHHHH
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRI--DCLELPLIQHAQGPDTDRLSSVLN--------ADTIFDWIIIT----SPEAG 114 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~--~v~~~P~~~~~~~~~~~~l~~~l~--------~~~~~d~IvFT----S~~av 114 (286)
+.+|||.-... ....+.+.|++.|+ .+... .+..+..+.+. ....+|.|++- ..++.
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~--------~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~ 75 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAF--------TDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGI 75 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEE--------SSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEe--------CCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHH
Confidence 46899987764 35678888988987 44322 12233444442 23568887774 33555
Q ss_pred HHHHHHHHHc-CCCCcEEE-EEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 115 SVFLEAWKEA-GTPNVRIG-VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 115 ~~~~~~l~~~-~~~~~~i~-aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
+ +++.+++. ....++++ ..+........+.++. |.. ++..+..+.+.|...|..
T Consensus 76 ~-~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~~---g~~-~~l~KP~~~~~l~~~i~~ 131 (152)
T 3heb_A 76 D-ILKLVKENPHTRRSPVVILTTTDDQREIQRCYDL---GAN-VYITKPVNYENFANAIRQ 131 (152)
T ss_dssp H-HHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHHT---TCS-EEEECCSSHHHHHHHHHH
T ss_pred H-HHHHHHhcccccCCCEEEEecCCCHHHHHHHHHC---CCc-EEEeCCCCHHHHHHHHHH
Confidence 5 45666653 22355554 4555554444433222 654 456667788888776654
No 304
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=43.28 E-value=29 Score=30.92 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=48.2
Q ss_pred hHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeCh-------HHHHHHHHHhccccC---CCceEEEe
Q 023179 191 NEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLISDTEQ---WSNSVACI 260 (286)
Q Consensus 191 ~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~-------sav~~~~~~~~~~~~---~~~~iv~I 260 (286)
+.+.+.|.+.|++++.+.+.+ .........+...|.|+|.|| ..+++|++.+..... .+.+++++
T Consensus 275 ~~i~~~l~~~g~~v~~~~~~~-----~~~~~~~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~~ 349 (404)
T 2ohh_A 275 HAIAEGAMSEGVDVRVYCLHE-----DDRSEIVKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALVF 349 (404)
T ss_dssp HHHHHHHHTTTCEEEEEETTT-----SCHHHHHHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEEE
T ss_pred HHHHHHHHhCCCeEEEEECCC-----CCHHHHHHHHHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEEE
Confidence 355677777787765554422 122333444678999999998 579999987653211 23344333
Q ss_pred C---------HHHHHHHHHcCCCeE
Q 023179 261 G---------ETTASAAKRLGLKNV 276 (286)
Q Consensus 261 G---------~~Ta~~l~~~G~~~v 276 (286)
| ....+.++.+|+..+
T Consensus 350 ~~~g~~~~a~~~l~~~l~~~g~~~~ 374 (404)
T 2ohh_A 350 GSMGGNGGATGTMKELLAEAGFDVA 374 (404)
T ss_dssp EEESSSCCHHHHHHHHHHHTTEEEE
T ss_pred EecCCCChhHHHHHHHHHHCCCEEE
Confidence 1 234566667787653
No 305
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=43.25 E-value=63 Score=26.80 Aligned_cols=75 Identities=11% Similarity=-0.011 Sum_probs=44.0
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAW 121 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~-~~d~Iv--FTS~~av~~~~~~l 121 (286)
..+.|++||||-.... +..+++.|.++|++|+.+- ... ....+...+.++... ...++. ++++.+++.+++.+
T Consensus 4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (259)
T 3edm_A 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTY--NGA-AEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAA 80 (259)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE--CSS-CHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc--CCC-HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 3577999999987653 6789999999999886431 110 001122222332221 122221 36788888887766
Q ss_pred HH
Q 023179 122 KE 123 (286)
Q Consensus 122 ~~ 123 (286)
.+
T Consensus 81 ~~ 82 (259)
T 3edm_A 81 AD 82 (259)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 306
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}
Probab=42.99 E-value=59 Score=27.94 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=24.8
Q ss_pred CCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 45 ~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
-..+.+++||||-..+ -+..+++.|.+.|.+|.-+
T Consensus 16 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~ 51 (333)
T 2q1w_A 16 PRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGI 51 (333)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred eecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEE
Confidence 3456689999998765 4678889999999888754
No 307
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.87 E-value=33 Score=25.43 Aligned_cols=32 Identities=6% Similarity=-0.085 Sum_probs=27.3
Q ss_pred CCCCCCeEEEeCCCC--chHHHHHHHHhCCCcEE
Q 023179 46 ASNSNPKVVVTRERG--KNGKLIKALAKHRIDCL 77 (286)
Q Consensus 46 ~~l~g~~VLitR~~~--~~~~l~~~L~~~G~~v~ 77 (286)
.+|.|++|++|-.-. ..+++.+.++++|+.|.
T Consensus 21 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~ 54 (112)
T 2ebu_A 21 NCLEGLIFVITGVLESIERDEAKSLIERYGGKVT 54 (112)
T ss_dssp SSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEEC
T ss_pred CCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEe
Confidence 578999999997764 57899999999999875
No 308
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=42.65 E-value=65 Score=28.54 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=54.2
Q ss_pred CCCeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC--HHHHHHHHHHH
Q 023179 49 SNPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS--PEAGSVFLEAW 121 (286)
Q Consensus 49 ~g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS--~~av~~~~~~l 121 (286)
..++|.+..+... .+.+.+.+++.|+++...-.+.... .|...+...+.. .+.|.|++.+ +.....|++.+
T Consensus 163 ~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~-~d~~~~l~~i~~-~~~d~v~~~~~~~~~~~~~~~~~ 240 (419)
T 3h5l_A 163 PNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPV-SDWGPTLAKLRA-DPPAVIVVTHFYPQDQALFMNQF 240 (419)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSC-SCCHHHHHHHHH-SCCSEEEECCCCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCC-ccHHHHHHHHHh-cCCCEEEEccccCchHHHHHHHH
Confidence 3477777765432 3466677778899887544333221 244444344422 5789999874 56677788888
Q ss_pred HHcCCCCcEEEE-EChhhHHHHHH
Q 023179 122 KEAGTPNVRIGV-VGAGTASIFEE 144 (286)
Q Consensus 122 ~~~~~~~~~i~a-VG~~Ta~~L~~ 144 (286)
.+.++ +..++. -|-.+.+.++.
T Consensus 241 ~~~g~-~~~~~~~~~~~~~~~~~~ 263 (419)
T 3h5l_A 241 MTDPT-NSLVYLQYGASLAAFRDI 263 (419)
T ss_dssp TTSCC-SCEEEECSGGGSHHHHHH
T ss_pred HHcCC-CceEEecCCCCcHHHHHh
Confidence 88777 344443 33344444443
No 309
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=42.42 E-value=28 Score=24.80 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=27.6
Q ss_pred CCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEE
Q 023179 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCL 77 (286)
Q Consensus 45 ~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~ 77 (286)
..+|.|++|++|-.-. ..+++.+.++++|+.+.
T Consensus 5 ~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~ 38 (92)
T 1l7b_A 5 GEALKGLTFVITGELSRPREEVKALLRRLGAKVT 38 (92)
T ss_dssp CCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEE
T ss_pred CCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEe
Confidence 4689999999996643 57899999999999875
No 310
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=42.38 E-value=28 Score=30.31 Aligned_cols=63 Identities=16% Similarity=0.144 Sum_probs=43.0
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
.|.+|+++.+.-....+...++..|+++..+|+-. ....|.+.+++.++...+...|++++++
T Consensus 94 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~~~~~~v~~~~~~ 156 (386)
T 2dr1_A 94 KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEYEP-GKAVKPEDLDDALRKNPDVEAVTITYNE 156 (386)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHCTTCCEEEEESEE
T ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCceEEEecCC-CCCCCHHHHHHHHhcCCCCcEEEEEeec
Confidence 47789998876433336777788899998888632 1123557787777433467899998765
No 311
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=42.29 E-value=34 Score=30.44 Aligned_cols=65 Identities=12% Similarity=0.066 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH-------HHHHHHHHHHHHcCC---CCcEEEE
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP-------EAGSVFLEAWKEAGT---PNVRIGV 133 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~-------~av~~~~~~l~~~~~---~~~~i~a 133 (286)
.+++.|.+.|+++..+.+-.. +...+ ...+..+|.|||-|| ..++.|++.+...+. .+.++++
T Consensus 276 ~i~~~l~~~g~~v~~~~~~~~----~~~~~---~~~l~~~d~iiigsP~y~~~~~~~~k~~ld~l~~~~~~~l~~k~~~~ 348 (404)
T 2ohh_A 276 AIAEGAMSEGVDVRVYCLHED----DRSEI---VKDILESGAIALGAPTIYDEPYPSVGDLLMYLRGLKFNRTLTRKALV 348 (404)
T ss_dssp HHHHHHHTTTCEEEEEETTTS----CHHHH---HHHHHTCSEEEEECCEETTEECTHHHHHHHHHHHHCGGGTCCEEEEE
T ss_pred HHHHHHHhCCCeEEEEECCCC----CHHHH---HHHHHHCCEEEEECccccccchHHHHHHHHHhhhccccccCCCEEEE
Confidence 444555556766654432111 12222 223467999999998 367788877654333 5566665
Q ss_pred EC
Q 023179 134 VG 135 (286)
Q Consensus 134 VG 135 (286)
+|
T Consensus 349 ~~ 350 (404)
T 2ohh_A 349 FG 350 (404)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 312
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=42.26 E-value=13 Score=30.30 Aligned_cols=43 Identities=14% Similarity=-0.044 Sum_probs=27.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
.+.+.+++.|.++..+-+.. ..|.+ +..+.+...|.|||.+|.
T Consensus 38 ~~~~~~~~~g~~v~~~dL~~---~~d~~---~~~~~l~~AD~iV~~~P~ 80 (204)
T 2amj_A 38 VADGTLRDLGHDVRIVRADS---DYDVK---AEVQNFLWADVVIWQMPG 80 (204)
T ss_dssp HHHHHHHHTTCEEEEEESSS---CCCHH---HHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHcCCEEEEEeCCc---cccHH---HHHHHHHhCCEEEEECCc
Confidence 34455566688887776653 22333 334445678999999974
No 313
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=42.12 E-value=95 Score=22.38 Aligned_cols=113 Identities=10% Similarity=0.143 Sum_probs=63.9
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHH
Q 023179 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (286)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~l~~ 123 (286)
.+++|||.-... ....+...|+..|..... ... .+.++..+.+ ....+|.|++-- .++.+ +++.+.+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v---~~~---~~~~~a~~~l-~~~~~dlii~D~~l~~~~g~~-~~~~lr~ 75 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQL---EFV---DNGAKALYQV-QQAKYDLIILDIGLPIANGFE-VMSAVRK 75 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEE---EEE---SSHHHHHHHH-TTCCCSEEEECTTCGGGCHHH-HHHHHHS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeE---EEE---CCHHHHHHHh-hcCCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 367899987765 356788889889887331 111 1234444555 345688777743 23444 5566665
Q ss_pred cC-CCCcEEEEEC-hhhHHHHHHhhhccCCCCceeccCCCC-CHHHHHHhccc
Q 023179 124 AG-TPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKA-TGKILASELPK 173 (286)
Q Consensus 124 ~~-~~~~~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~-~~e~L~~~L~~ 173 (286)
.. ...++++++. ....+...+.++. |.. ++..+.. +.+.|...|..
T Consensus 76 ~~~~~~~pii~~s~~~~~~~~~~~~~~---ga~-~~l~Kp~~~~~~l~~~i~~ 124 (144)
T 3kht_A 76 PGANQHTPIVILTDNVSDDRAKQCMAA---GAS-SVVDKSSNNVTDFYGRIYA 124 (144)
T ss_dssp SSTTTTCCEEEEETTCCHHHHHHHHHT---TCS-EEEECCTTSHHHHHHHHHH
T ss_pred cccccCCCEEEEeCCCCHHHHHHHHHc---CCC-EEEECCCCcHHHHHHHHHH
Confidence 32 3456666554 4444444333222 654 4566667 78888776643
No 314
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1
Probab=42.11 E-value=34 Score=28.60 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=36.3
Q ss_pred CCCEEEEeC---------hHHHHHHHHHhcccc--CCCceEEEeCHHHHHHHHHcCCCeE
Q 023179 228 SIPVVAVAS---------PSAVRSWVNLISDTE--QWSNSVACIGETTASAAKRLGLKNV 276 (286)
Q Consensus 228 ~~d~IvftS---------~sav~~~~~~~~~~~--~~~~~iv~IG~~Ta~~l~~~G~~~v 276 (286)
...+|++|| .+.++...+.+.+.. ..+..+++||.+..+.++..|...+
T Consensus 57 ~~~~IvitSDrGLcG~~Nsni~k~~~~~i~~~~~~g~~~~l~~vG~Kg~~~~~~~~~~i~ 116 (230)
T 1fs0_G 57 RVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVV 116 (230)
T ss_dssp EEEEEEECCSSSCSTTHHHHHHHHHHHHHHHHHHTTCEEEEEEESHHHHHHHHHHCCCEE
T ss_pred cEEEEEEeCCccccccccHHHHHHHHHHHHHhhcCCCcEEEEEEeHHHHHHHHhCCCceE
Confidence 356899999 777777766654321 1246899999999999999887654
No 315
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=41.99 E-value=37 Score=28.53 Aligned_cols=76 Identities=9% Similarity=-0.008 Sum_probs=49.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCC-CcEEEEEChhh
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTP-NVRIGVVGAGT 138 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~-~~~i~aVG~~T 138 (286)
.-+.+.|+++|..+.....+......+ .+.+.+.|+....+|+|+..+-..+..+++.+.+.+.. ++.++..+...
T Consensus 146 ~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~~di~vig~d~~~ 224 (305)
T 3g1w_A 146 TGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVRLESRAGEIQIISFDTDK 224 (305)
T ss_dssp HHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCTTTSEEEEESCCH
T ss_pred HHHHHHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEECCCcchhhHHHHHHhcCCCCCeEEEEeCCCH
Confidence 345667777887776554433221111 12355556555678999988888877888888888774 67788777644
No 316
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Probab=41.95 E-value=53 Score=27.79 Aligned_cols=75 Identities=11% Similarity=0.107 Sum_probs=40.4
Q ss_pred CCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CC-ccEEE--EeCHHHHHHHHH
Q 023179 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TI-FDWII--ITSPEAGSVFLE 119 (286)
Q Consensus 45 ~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~-~~-~d~Iv--FTS~~av~~~~~ 119 (286)
..++.|+++|||-... -+..+++.|.++|++|+.+- ... ...+.+.+.+... .. ..++. +++..+++.+++
T Consensus 28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~---r~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 103 (281)
T 4dry_A 28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITG---RRP-DVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFA 103 (281)
T ss_dssp ------CEEEETTTTSHHHHHHHHHHHHTTCEEEEEE---SCH-HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE---CCH-HHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHH
Confidence 3567899999998765 36789999999999876431 110 0112222222111 11 11221 478888888887
Q ss_pred HHHH
Q 023179 120 AWKE 123 (286)
Q Consensus 120 ~l~~ 123 (286)
.+.+
T Consensus 104 ~~~~ 107 (281)
T 4dry_A 104 AVRA 107 (281)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 317
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=41.64 E-value=90 Score=26.84 Aligned_cols=146 Identities=8% Similarity=0.056 Sum_probs=79.2
Q ss_pred CCccEEEEe-CHHHHHHHHH--HHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCC
Q 023179 101 TIFDWIIIT-SPEAGSVFLE--AWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGK 176 (286)
Q Consensus 101 ~~~d~IvFT-S~~av~~~~~--~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~ 176 (286)
...+.||-. +......... .+.+. +++++..+.... .+.+. ..-..+.|.. .....+++.|.+.
T Consensus 72 ~~v~~iig~~~s~~~~~~~~~~~~~~~---~iP~v~~~~~~~-~~~~~------~~~f~~~~~~~~~~~~~~~~l~~~-- 139 (364)
T 3lop_A 72 DNPVALLTVVGTANVEALMREGVLAEA---RLPLVGPATGAS-SMTTD------PLVFPIKASYQQEIDKMITALVTI-- 139 (364)
T ss_dssp SCEEEEECCCCHHHHHHHHHTTHHHHH---TCCEESCSCCCG-GGGSC------TTEECCSCCHHHHHHHHHHHHHHT--
T ss_pred cCcEEEEecCCCHHHHhhCchhhHHhc---CCcEEEcccCcH-hhccC------CcEEEeCCChHHHHHHHHHHHHHc--
Confidence 468888853 4444444555 55553 455655543322 11111 1111122221 2244566666543
Q ss_pred CCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeC-hHHHHHHHHHhc
Q 023179 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS-PSAVRSWVNLIS 248 (286)
Q Consensus 177 ~~~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS-~sav~~~~~~~~ 248 (286)
..+||.++.++.. ...+.+.|++.|++|.....|... .......+..+ ..+|+|++.+ ...+-.++..+.
T Consensus 140 g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~ 217 (364)
T 3lop_A 140 GVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRN--TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYR 217 (364)
T ss_dssp TCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTT--SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHH
T ss_pred CCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCC--CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHH
Confidence 3478888765432 346778899999988665555432 22223333332 5789988854 666777877776
Q ss_pred cccCCCceEEEeC
Q 023179 249 DTEQWSNSVACIG 261 (286)
Q Consensus 249 ~~~~~~~~iv~IG 261 (286)
+.+ ...+++..+
T Consensus 218 ~~g-~~~~~i~~~ 229 (364)
T 3lop_A 218 ARG-GEAQLLGLS 229 (364)
T ss_dssp HTT-CCCEEEECT
T ss_pred HcC-CCCeEEEec
Confidence 653 256666553
No 318
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=41.61 E-value=32 Score=28.85 Aligned_cols=97 Identities=7% Similarity=-0.102 Sum_probs=44.1
Q ss_pred hhhhcCCCCCCCCccccccccccccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh
Q 023179 20 SRLRLNRPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN 98 (286)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~ 98 (286)
+-|--+...|+.+.+.-... .....+.|++||||-.... +..+++.|.++|++|+.+- ... ...+.+.+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~---~~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~---r~~-~~~~~~~~~l~ 76 (272)
T 1yb1_A 4 HHHHHHSSGRENLYFQGHMP---KRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWD---INK-HGLEETAAKCK 76 (272)
T ss_dssp ------------------------CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE---SCH-HHHHHHHHHHH
T ss_pred cccccccccchhheeccccC---CcccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEE---cCH-HHHHHHHHHHH
Confidence 33444566777765444321 1124578999999987653 6789999999999876431 111 01122222332
Q ss_pred cCC-CccEEE--EeCHHHHHHHHHHHHH
Q 023179 99 ADT-IFDWII--ITSPEAGSVFLEAWKE 123 (286)
Q Consensus 99 ~~~-~~d~Iv--FTS~~av~~~~~~l~~ 123 (286)
..+ ...++. +++..+++.+++.+.+
T Consensus 77 ~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 104 (272)
T 1yb1_A 77 GLGAKVHTFVVDCSNREDIYSSAKKVKA 104 (272)
T ss_dssp HTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hcCCeEEEEEeeCCCHHHHHHHHHHHHH
Confidence 221 222221 3677888888776654
No 319
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=41.40 E-value=34 Score=27.05 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=31.4
Q ss_pred HHHHHHHh-CCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeCh-------HHHHHHHHHhcc
Q 023179 192 EIEEGLSN-RGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-------SAVRSWVNLISD 249 (286)
Q Consensus 192 ~L~~~L~~-~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~-------sav~~~~~~~~~ 249 (286)
.+.+.|++ .|++|+.+.+.+. . ...+...|.|+|.|| ..++.|++.+..
T Consensus 24 ~i~~~l~~~~g~~v~~~~l~~~------~---~~~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~ 80 (188)
T 2ark_A 24 LVAEGARSLEGTEVRLKHVDEA------T---KEDVLWADGLAVGSPTNMGLVSWKMKRFFDDVLG 80 (188)
T ss_dssp HHHHHHHTSTTEEEEEEETTTC------C---HHHHHHCSEEEEEEECBTTBCCHHHHHHHHHTGG
T ss_pred HHHHHHhhcCCCeEEEEEhhhC------C---HHHHHhCCEEEEEeCccCCcCCHHHHHHHHHHhh
Confidence 45667776 7776655544322 1 122347899999885 568999988764
No 320
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=41.20 E-value=65 Score=26.93 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCChhHHHHHHHhCCCeeEEEE
Q 023179 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLN 208 (286)
Q Consensus 178 ~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~ 208 (286)
+...+++.+..+.+.+.+.|.++|+.+..-.
T Consensus 117 ~~~~lIlqp~~~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 117 HVKTLVLQPNNREDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp TCCEEEEEESSCHHHHHHHHHHTTEEEEEEE
T ss_pred cCCEEEEECCCChHHHHHHHHHCCCEEEEEE
Confidence 3457778888899999999999999877654
No 321
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=41.16 E-value=33 Score=29.94 Aligned_cols=161 Identities=14% Similarity=0.099 Sum_probs=84.8
Q ss_pred CeEEEeCCCCchHHH----HHHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeCHHHH----HHHHH
Q 023179 51 PKVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPEAG----SVFLE 119 (286)
Q Consensus 51 ~~VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~---l~~~~~~d~IvFTS~~av----~~~~~ 119 (286)
.-|++.-..+....+ .+.+++.|++...+-+- .....+++.+. |+.....|.|+.--|--- +..++
T Consensus 36 LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp---~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~ 112 (288)
T 1b0a_A 36 LAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLP---ETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLE 112 (288)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEEC---TTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHT
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECC---CCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHh
Confidence 334444444433333 34466778877544321 11122344444 445678899998876321 11111
Q ss_pred HHHH-cCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEEcCC-CChhHHHH
Q 023179 120 AWKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASA-KASNEIEE 195 (286)
Q Consensus 120 ~l~~-~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~~g~-~~~~~L~~ 195 (286)
.+.- ...|+.. +.-.-.|- . |-. .+.| .|++++++.|.... ..|++++++... .....+..
T Consensus 113 ~I~p~KDVDG~~-----p~n~g~l~-~------g~~-~~~P--cTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~ 177 (288)
T 1b0a_A 113 RIHPDKDVDGFH-----PYNVGRLC-Q------RAP-RLRP--CTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSM 177 (288)
T ss_dssp TSCTTTCTTCCS-----HHHHHHHH-T------TCC-SSCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHH
T ss_pred ccCCccCcccCC-----ccchhHHh-C------CCC-CCCC--CcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHH
Confidence 1100 0112222 22212221 1 321 2343 47888877776654 378999999665 45667899
Q ss_pred HHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeCh
Q 023179 196 GLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 196 ~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~ 237 (286)
.|...|++|+.+.-.+ .. +.+.....|+|+-+.+
T Consensus 178 lL~~~gAtVtv~hs~t-----~~---L~~~~~~ADIVI~Avg 211 (288)
T 1b0a_A 178 ELLLAGCTTTVTHRFT-----KN---LRHHVENADLLIVAVG 211 (288)
T ss_dssp HHHTTTCEEEEECSSC-----SC---HHHHHHHCSEEEECSC
T ss_pred HHHHCCCeEEEEeCCc-----hh---HHHHhccCCEEEECCC
Confidence 9999999987764222 11 1222347888887776
No 322
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=41.15 E-value=90 Score=21.85 Aligned_cols=109 Identities=6% Similarity=-0.019 Sum_probs=64.6
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHHc
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~l~~~ 124 (286)
.++|||.-... ....+.+.|++.|+++... .+.++..+.+.. ..+|.|++-- .++.+ +++.+++.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~-~~~dlii~D~~l~~~~g~~-~~~~l~~~ 72 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYV--------MSGTDALHAMST-RGYDAVFIDLNLPDTSGLA-LVKQLRAL 72 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEE--------SSHHHHHHHHHH-SCCSEEEEESBCSSSBHHH-HHHHHHHS
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEE--------CCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHH-HHHHHHhh
Confidence 46899987765 3567888898888754322 233444445533 5689888752 34555 55666664
Q ss_pred C-CCCcEEEEEChhh-HH--HHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC
Q 023179 125 G-TPNVRIGVVGAGT-AS--IFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG 175 (286)
Q Consensus 125 ~-~~~~~i~aVG~~T-a~--~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~ 175 (286)
. ...++++++.... .. ..... |.. ++..+..+.+.|.+.+....
T Consensus 73 ~~~~~~~ii~~s~~~~~~~~~~~~~------g~~-~~l~KP~~~~~L~~~i~~~~ 120 (127)
T 3i42_A 73 PMEKTSKFVAVSGFAKNDLGKEACE------LFD-FYLEKPIDIASLEPILQSIE 120 (127)
T ss_dssp CCSSCCEEEEEECC-CTTCCHHHHH------HCS-EEEESSCCHHHHHHHHHHHC
T ss_pred hccCCCCEEEEECCcchhHHHHHHH------hhH-HheeCCCCHHHHHHHHHHhh
Confidence 2 3466766654332 21 22233 533 46667788999988886544
No 323
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=41.11 E-value=53 Score=27.73 Aligned_cols=48 Identities=10% Similarity=0.139 Sum_probs=29.6
Q ss_pred CCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeC
Q 023179 186 SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVAS 236 (286)
Q Consensus 186 g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS 236 (286)
...+...|.+.|+..|++|+.++..+ ..+..+.. .+.+..+|+||+..
T Consensus 38 ~~~~~~~l~~aL~~~~~~v~~~~~~~--~~~~fp~~-~~~L~~yDvIIl~~ 85 (256)
T 2gk3_A 38 YEEGATWLLECLRKGGVDIDYMPAHT--VQIAFPES-IDELNRYDVIVISD 85 (256)
T ss_dssp EEESCHHHHHHHHHTTCEEEEECHHH--HHHCCCCS-HHHHHTCSEEEEES
T ss_pred ccccHHHHHHHHHhcCceEEEEeccc--chhhCCcC-hhHHhcCCEEEEeC
Confidence 33466679999999998887664310 00111111 22356899999986
No 324
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=41.05 E-value=71 Score=30.14 Aligned_cols=108 Identities=9% Similarity=0.014 Sum_probs=62.8
Q ss_pred CCCCCccccccccccccCCCCCCCeEEEeCCCCchHHHHHHH-HhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEE
Q 023179 28 LPFQFSRIQASSDATSASASNSNPKVVVTRERGKNGKLIKAL-AKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWI 106 (286)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~~~~l~~~L-~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~I 106 (286)
-|.++.|+....| . ..+.|++|+|.-.....-.+++.| .+.|+++..+-.+. ..+.+.++..++.... +.+
T Consensus 262 ~r~~~~~~~~~~d---~-~~l~GKrv~i~gd~~~~~~la~~L~~ElGm~vv~~gt~~---~~~~~~~~~~~~~~~~-~v~ 333 (525)
T 3aek_B 262 STLRQPWWSASVD---S-TYLTGKRVFIFGDGTHVIAAARIAAKEVGFEVVGMGCYN---REMARPLRTAAAEYGL-EAL 333 (525)
T ss_dssp TTCCHHHHHHSGG---G-GGGTTCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEESC---GGGHHHHHHHHHHTTC-CCE
T ss_pred HHHHHHHHHHhhh---h-hhcCCCEEEEEcCchHHHHHHHHHHHHcCCeeEEEecCc---hhHHHHHHHHHHhcCC-cEE
Confidence 4566777665443 2 788999999986555677888989 79999986543221 1122344444544322 444
Q ss_pred EEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCce
Q 023179 107 IITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDV 155 (286)
Q Consensus 107 vFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~ 155 (286)
+......++ +.+.+. +..++.=|..-....++. |+..
T Consensus 334 i~~D~~el~---~~i~~~---~pDL~ig~~~~~~~a~~~------giP~ 370 (525)
T 3aek_B 334 ITDDYLEVE---KAIEAA---APELILGTQMERNIAKKL------GLPC 370 (525)
T ss_dssp ECSCHHHHH---HHHHHH---CCSEEEECHHHHHHHHHH------TCCE
T ss_pred EeCCHHHHH---HHHhhc---CCCEEEecchhHHHHHHc------CCCE
Confidence 444544433 333332 234555455556666776 8754
No 325
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=41.01 E-value=92 Score=29.26 Aligned_cols=113 Identities=12% Similarity=0.090 Sum_probs=72.8
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceEE--------eee--CCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 023179 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ--------HAQ--GPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~--------~~~--~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~ 120 (286)
++|+|.-...-+..+++.|.+.|.++..+-.=. ... ..+.+.|. .. .+.++|.+|.+..+--..++-.
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~-~a-gi~~ad~vi~~~~~d~~ni~~~ 426 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLR-QA-GIDRASGIIVTTNDDSTNIFLT 426 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHH-HH-TTTSCSEEEECCSCHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHH-hc-CccccCEEEEECCCchHHHHHH
Confidence 678888777678899999999998876543110 001 11223343 33 5789999999988776555433
Q ss_pred H--HHcCCCCcEEE--EEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcc
Q 023179 121 W--KEAGTPNVRIG--VVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELP 172 (286)
Q Consensus 121 l--~~~~~~~~~i~--aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~ 172 (286)
+ ++.+. +.+++ +-.+...+.|++. |....+.|+...++.|+..+.
T Consensus 427 ~~ak~l~~-~~~iiar~~~~~~~~~l~~~------G~d~vi~p~~~~~~~i~~~~~ 475 (565)
T 4gx0_A 427 LACRHLHS-HIRIVARANGEENVDQLYAA------GADFVVSNASVGANILGNLLE 475 (565)
T ss_dssp HHHHHHCS-SSEEEEEESSTTSHHHHHHH------TCSEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHCC-CCEEEEEECCHHHHHHHHHc------CCCEEEccchHHHHHHHHHhc
Confidence 3 33333 33443 5666777888888 998877777666666666554
No 326
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=41.01 E-value=52 Score=28.42 Aligned_cols=69 Identities=7% Similarity=0.049 Sum_probs=43.1
Q ss_pred cccCCCC-CCCeEEEeCCCCchHHHH-HHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHH
Q 023179 42 TSASASN-SNPKVVVTRERGKNGKLI-KALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (286)
Q Consensus 42 ~~~~~~l-~g~~VLitR~~~~~~~l~-~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~ 115 (286)
+.+-..| .|++|.++.+......+. ..|++.|++...+-+. ..+ .......| .-+..|+++...|....
T Consensus 145 I~s~~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~---~~~-~~~~~~al-~~G~vDa~~~~~p~~~~ 215 (341)
T 3un6_A 145 LNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYH---EMS-PAEMPAAL-SEHRITGYSVAEPFGAL 215 (341)
T ss_dssp GGGCCSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEE---ECC-GGGHHHHH-HTTSCSEEEEETTHHHH
T ss_pred CCCHHHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEE---EcC-hHHHHHHH-HcCCCCEEEecCCHHHH
Confidence 3344678 899999998765555444 4888999865332222 222 13344555 35789998888876543
No 327
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=41.01 E-value=9.9 Score=30.76 Aligned_cols=20 Identities=5% Similarity=0.037 Sum_probs=14.0
Q ss_pred HHHHHHHHhCC--CcEEEeceE
Q 023179 63 GKLIKALAKHR--IDCLELPLI 82 (286)
Q Consensus 63 ~~l~~~L~~~G--~~v~~~P~~ 82 (286)
+.+.+.+++.| .++..+.+.
T Consensus 24 ~~~~~~~~~~g~~~~v~~~dL~ 45 (208)
T 2hpv_A 24 ETFLASYRETNPSDEIEILDVY 45 (208)
T ss_dssp HHHHHHHHHHCTTSEEEEEETT
T ss_pred HHHHHHHHHhCCCCeEEEeeCC
Confidence 34566677776 888877776
No 328
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=40.84 E-value=1.1e+02 Score=26.71 Aligned_cols=63 Identities=22% Similarity=0.212 Sum_probs=31.3
Q ss_pred CcEEEEEChhhHHHHHHhhhccCCCCceeccCCCC--CHHH--HHHhcccCCCCCCEEEEEcCCCChhHHHHHHHh
Q 023179 128 NVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKA--TGKI--LASELPKNGKKKCTVLYPASAKASNEIEEGLSN 199 (286)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~--~~e~--L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~ 199 (286)
++-|.--|..|-..+-.. |..+.++|-.. +.+. -++.+.+ .|.-+++...+...+.|.+.+.+
T Consensus 254 DlvI~raG~~Tv~E~~a~------G~P~Ilip~p~~~~~~Q~~NA~~l~~---~G~a~~l~~~~~~~~~L~~~i~~ 320 (365)
T 3s2u_A 254 DLVICRAGALTVSELTAA------GLPAFLVPLPHAIDDHQTRNAEFLVR---SGAGRLLPQKSTGAAELAAQLSE 320 (365)
T ss_dssp SEEEECCCHHHHHHHHHH------TCCEEECC-----CCHHHHHHHHHHT---TTSEEECCTTTCCHHHHHHHHHH
T ss_pred eEEEecCCcchHHHHHHh------CCCeEEeccCCCCCcHHHHHHHHHHH---CCCEEEeecCCCCHHHHHHHHHH
Confidence 344443576776666666 88777665321 1111 1233433 23445555555455566666653
No 329
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=40.78 E-value=27 Score=28.41 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=24.9
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
..+.||+||||-..+ -+..+++.|.+.|.+|.-+
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~ 51 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAM 51 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEE
Confidence 577899999998865 4678999999999877654
No 330
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=40.76 E-value=13 Score=30.07 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=34.2
Q ss_pred hCCCeeEEEEeeeeecCC----------------CCcHHHHHHcCCCCEEEEeCh-------HHHHHHHHHhc
Q 023179 199 NRGFEVVRLNTYTTEPVH----------------HVDQTVLKQALSIPVVAVASP-------SAVRSWVNLIS 248 (286)
Q Consensus 199 ~~G~~V~~~~vY~~~~~~----------------~~~~~~~~~~~~~d~IvftS~-------sav~~~~~~~~ 248 (286)
+.|.+|+.+.+|+....+ +...+..+.+...|.|||.+| ..+++|++.+-
T Consensus 28 ~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~ 100 (196)
T 3lcm_A 28 SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFIFPIWWSGMPAILKGFIDRVF 100 (196)
T ss_dssp CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHS
T ss_pred cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEECchhhccccHHHHHHHHHHc
Confidence 467888888888664211 112334444678999999875 79999999873
No 331
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=40.62 E-value=16 Score=29.68 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=14.2
Q ss_pred hHHHHHHHhCCCeeEEEEeeee
Q 023179 191 NEIEEGLSNRGFEVVRLNTYTT 212 (286)
Q Consensus 191 ~~L~~~L~~~G~~V~~~~vY~~ 212 (286)
..+...|.-.|+++.....+.-
T Consensus 165 ~~l~~~l~~~G~~~~~~v~~~g 186 (212)
T 3r6w_A 165 PWLRTALGFIGIDEVTVVAAEG 186 (212)
T ss_dssp HHHHHHHHHHTCCEEEEEEECC
T ss_pred HHHHHHHHHCCCceeEEEEEec
Confidence 4567777778887765554443
No 332
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=40.60 E-value=93 Score=21.85 Aligned_cols=109 Identities=11% Similarity=0.140 Sum_probs=61.6
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC-----HHHHHHHHHHHH
Q 023179 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS-----PEAGSVFLEAWK 122 (286)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS-----~~av~~~~~~l~ 122 (286)
.+.+|||.-... ....+...|+..|+++..+ .+.++....+.....+|.|++-- .++.+ +++.+.
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~-~~~~l~ 74 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAV--------SSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQ-VARVAR 74 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHH-HHHHHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEE--------CCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHH-HHHHHH
Confidence 467899987664 3457788888888865421 12234444553323789888742 34554 456666
Q ss_pred HcCCCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 123 EAGTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 123 ~~~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
+.. ..++++++ +........+.++. | ++..+..+.+.|...+..
T Consensus 75 ~~~-~~~~ii~~s~~~~~~~~~~~~~~---~---~~l~kP~~~~~l~~~i~~ 119 (132)
T 2rdm_A 75 EID-PNMPIVYISGHAALEWASNGVPD---S---IILEKPFTSAQLITAVSQ 119 (132)
T ss_dssp HHC-TTCCEEEEESSCCTTHHHHSCTT---C---EEEESSCCHHHHHHHHHH
T ss_pred hcC-CCCCEEEEeCCccHHHHHhhcCC---c---ceEeCCCCHHHHHHHHHH
Confidence 543 35666555 43333333333211 1 355566778888776644
No 333
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=40.43 E-value=76 Score=25.79 Aligned_cols=54 Identities=15% Similarity=0.007 Sum_probs=33.3
Q ss_pred cCCCCEEEEeChHHHHHHH--HHhccccCCCceEEEe--CHHHHHHHHHcCCCeEEeCC
Q 023179 226 ALSIPVVAVASPSAVRSWV--NLISDTEQWSNSVACI--GETTASAAKRLGLKNVYYPT 280 (286)
Q Consensus 226 ~~~~d~IvftS~sav~~~~--~~~~~~~~~~~~iv~I--G~~Ta~~l~~~G~~~v~~~~ 280 (286)
+...|.|+++.+....+.. ...+..+ ...++++- .+...+.++++|...++.|.
T Consensus 69 i~~ad~vi~~~~~d~~n~~~~~~a~~~~-~~~~iia~~~~~~~~~~l~~~G~~~vi~p~ 126 (234)
T 2aef_A 69 VRGARAVIVDLESDSETIHCILGIRKID-ESVRIIAEAERYENIEQLRMAGADQVISPF 126 (234)
T ss_dssp CTTCSEEEECCSCHHHHHHHHHHHHHHC-SSSEEEEECSSGGGHHHHHHHTCSEEECHH
T ss_pred cchhcEEEEcCCCcHHHHHHHHHHHHHC-CCCeEEEEECCHhHHHHHHHCCCCEEECHH
Confidence 4688999988776544433 2222221 23355543 66777888999998776653
No 334
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=40.43 E-value=14 Score=30.84 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=27.1
Q ss_pred HHHHHHHhC-CCcEEEeceEEeeeCC--C-------------c--hHHHHHHhcCCCccEEEEeCHH
Q 023179 64 KLIKALAKH-RIDCLELPLIQHAQGP--D-------------T--DRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 64 ~l~~~L~~~-G~~v~~~P~~~~~~~~--~-------------~--~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
.+.+.|++. |+++..+.+......+ . . +.+...++.+..+|.|||.||.
T Consensus 23 ~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~iI~~sP~ 89 (242)
T 1sqs_A 23 RLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDIIIISSPV 89 (242)
T ss_dssp HHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCEEEEEccc
Confidence 344445555 8888776655432110 0 0 2334444445678999998874
No 335
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=40.37 E-value=1.2e+02 Score=26.15 Aligned_cols=140 Identities=12% Similarity=0.016 Sum_probs=72.9
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHH
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE 144 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~ 144 (286)
+.+.+.+.|+++..+|..- ......+.+.+ ..+.+|..+..+...+... ..+. ..++++..-. .
T Consensus 35 l~~~~~~~G~~v~~~~~~~---~g~~~~~~~al-~~G~~D~~~~~~~~~~~~~-----~~g~-~~~~v~~~~~------~ 98 (348)
T 3uif_A 35 FPEELRKQGIKVEWVPAAM---ASVGPVINEGF-ASGKIDFGIYGDLPPIILN-----ASKP-TVQLVAPWGT------T 98 (348)
T ss_dssp HHHHHHHTTEEEEEEEECT---TCHHHHHHHHH-HTTCCCEEEEESHHHHHHH-----HHSC-CEEEEEECCC------C
T ss_pred HHHHHHhcCCeEEEEeccc---CCCcHHHHHHH-HcCCCCEEecCcHHHHHHH-----hCCC-CEEEEEeccC------C
Confidence 6678888888776644311 11123455566 4588999886655443321 1121 3344332211 1
Q ss_pred hhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHH
Q 023179 145 VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLK 224 (286)
Q Consensus 145 ~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~ 224 (286)
. +.. .+++++.... .+... +|++|.+..|......+...|++.|.+...+..+. . ...++..
T Consensus 99 ~------~~~-lvv~~~s~i~----s~~DL--kGk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~---~--~~~~~~~ 160 (348)
T 3uif_A 99 S------NSY-LVVPKNSTAK----SIKDL--KGKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVN---V--NPQVGAA 160 (348)
T ss_dssp C------CCE-EEEETTCCCC----SGGGG--TTSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEEC---C--CHHHHHH
T ss_pred C------ceE-EEEECCCCCC----CHHHc--CCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEE---C--CHHHHHH
Confidence 1 322 2233221111 11111 57899998777777778888999997643332221 1 1223333
Q ss_pred H--cCCCCEEEEeChH
Q 023179 225 Q--ALSIPVVAVASPS 238 (286)
Q Consensus 225 ~--~~~~d~IvftS~s 238 (286)
. .+.+|+++...+.
T Consensus 161 al~~G~vDa~~~~~~~ 176 (348)
T 3uif_A 161 ALASGTVDGFFSLFDS 176 (348)
T ss_dssp HHHHTSSSEEEESTTH
T ss_pred HHHcCCCCEEEechHH
Confidence 2 2789998876654
No 336
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=40.33 E-value=1.1e+02 Score=26.59 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=50.4
Q ss_pred CCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE-eCHHHHHHHHHHHH
Q 023179 49 SNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAWK 122 (286)
Q Consensus 49 ~g~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvF-TS~~av~~~~~~l~ 122 (286)
..++|.+..... ....+.+.|+++|+.+...-.+... ..|.......+.. ...|.|++ .+...+..+++.+.
T Consensus 142 g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~-~~~dav~~~~~~~~a~~~~~~~~ 219 (392)
T 3lkb_A 142 KGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG-NLDNTALLKRFEQ-AGVEYVVHQNVAGPVANILKDAK 219 (392)
T ss_dssp TTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT-CCCCHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC-CcCHHHHHHHHHh-cCCCEEEEecCcchHHHHHHHHH
Confidence 457777765432 2346788899999987643322221 1233333333423 56899985 67777777888888
Q ss_pred HcCCCCcEEEEE
Q 023179 123 EAGTPNVRIGVV 134 (286)
Q Consensus 123 ~~~~~~~~i~aV 134 (286)
+.++. .+++..
T Consensus 220 ~~g~~-~~~~~~ 230 (392)
T 3lkb_A 220 RLGLK-MRHLGA 230 (392)
T ss_dssp HTTCC-CEEEEC
T ss_pred HcCCC-ceEEEe
Confidence 87774 555544
No 337
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=40.32 E-value=21 Score=28.37 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=32.6
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh---cCCCccEEEEeCHHHH
Q 023179 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN---ADTIFDWIIITSPEAG 114 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~---~~~~~d~IvFTS~~av 114 (286)
...|.+.|++.|+++....+ .+ .|.+.+.+++. ....+|.||.|-.-++
T Consensus 42 g~~L~~~L~~~G~~v~~~~i---V~-Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 42 GDIIKQLLIENGHKIIGYSL---VP-DDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEE---EC-SCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEEE---eC-CCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 46799999999999875533 22 23355555553 2467899999876554
No 338
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=40.05 E-value=1.1e+02 Score=22.38 Aligned_cols=115 Identities=12% Similarity=0.136 Sum_probs=63.9
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAW 121 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~l 121 (286)
.-.+++|||.-... ....+...|++.|.... +.. ..+.++..+.+.. ..+|.|++-- .++.+ +++.+
T Consensus 12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~----v~~--~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~-~~~~l 83 (152)
T 3eul_A 12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNV----VGE--ADDGAAALELIKA-HLPDVALLDYRMPGMDGAQ-VAAAV 83 (152)
T ss_dssp --CCEEEEEECSSHHHHHHHHHHHHHHSSEEE----EEE--ESSHHHHHHHHHH-HCCSEEEEETTCSSSCHHH-HHHHH
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEE----EEE--eCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHH-HHHHH
Confidence 34478899998765 35677888888774321 111 1233344444433 4689888752 23444 55666
Q ss_pred HHcCCCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC
Q 023179 122 KEAGTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (286)
Q Consensus 122 ~~~~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~ 174 (286)
.+.. ..++++++ +........+.++. |.. ++..+..+.+.|...+...
T Consensus 84 ~~~~-~~~~ii~~s~~~~~~~~~~~~~~---g~~-~~l~Kp~~~~~l~~~i~~~ 132 (152)
T 3eul_A 84 RSYE-LPTRVLLISAHDEPAIVYQALQQ---GAA-GFLLKDSTRTEIVKAVLDC 132 (152)
T ss_dssp HHTT-CSCEEEEEESCCCHHHHHHHHHT---TCS-EEEETTCCHHHHHHHHHHH
T ss_pred HhcC-CCCeEEEEEccCCHHHHHHHHHc---CCC-EEEecCCCHHHHHHHHHHH
Confidence 6543 45566554 44444443333222 654 4566677888888777654
No 339
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}
Probab=39.94 E-value=83 Score=25.79 Aligned_cols=33 Identities=15% Similarity=-0.018 Sum_probs=26.6
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEe
Q 023179 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (286)
.+.|++||||-.... ...+++.|.++|++|..+
T Consensus 4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~ 37 (250)
T 2fwm_X 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGF 37 (250)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 367899999987653 678999999999988653
No 340
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=39.90 E-value=52 Score=25.90 Aligned_cols=76 Identities=20% Similarity=0.148 Sum_probs=47.3
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH--------HHHHHH
Q 023179 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV--------FLEAWK 122 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~--------~~~~l~ 122 (286)
|+|+|..-.+.-..+.+.|++.|+++..++. + + .+..+|.||++-...-.. +.+.+.
T Consensus 1 m~i~vl~~~g~~~~~~~~l~~~G~~~~~~~~------~--~-------~~~~~dglil~GG~~~~~~~~~~~~~~~~~i~ 65 (186)
T 2ywj_A 1 MIIGVLAIQGDVEEHEEAIKKAGYEAKKVKR------V--E-------DLEGIDALIIPGGESTAIGKLMKKYGLLEKIK 65 (186)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTSEEEEECS------G--G-------GGTTCSEEEECCSCHHHHHHHHHHTTHHHHHH
T ss_pred CEEEEEecCcchHHHHHHHHHCCCEEEEECC------h--H-------HhccCCEEEECCCCchhhhhhhhccCHHHHHH
Confidence 5788886555556778999999998876652 1 1 246689999997643221 122222
Q ss_pred HcCCCCcEEEEEChhhHHHHHH
Q 023179 123 EAGTPNVRIGVVGAGTASIFEE 144 (286)
Q Consensus 123 ~~~~~~~~i~aVG~~Ta~~L~~ 144 (286)
..+.+++.|--+-.-....
T Consensus 66 ---~~~~PilGIC~G~Qll~~~ 84 (186)
T 2ywj_A 66 ---NSNLPILGTCAGMVLLSKG 84 (186)
T ss_dssp ---TCCCCEEEETHHHHHHSSC
T ss_pred ---hcCCcEEEECHHHHHHHHH
Confidence 2467787776665444433
No 341
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=39.86 E-value=27 Score=29.16 Aligned_cols=72 Identities=10% Similarity=0.088 Sum_probs=35.4
Q ss_pred HHHHHHhCCCcEEEeceEEeeeCC--C--chHHHHHHhcCCC--ccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEC
Q 023179 65 LIKALAKHRIDCLELPLIQHAQGP--D--TDRLSSVLNADTI--FDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVG 135 (286)
Q Consensus 65 l~~~L~~~G~~v~~~P~~~~~~~~--~--~~~l~~~l~~~~~--~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG 135 (286)
+.+.|+++|..+...-+....... . .+.+.+.|+.... +|+|+.++-..+..+++.+.+.|. +.+.++..+
T Consensus 158 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 237 (298)
T 3tb6_A 158 FIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLKVPEDMSIVGYD 237 (298)
T ss_dssp HHHHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCCTTTTCEEECSB
T ss_pred HHHHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCCCCCceEEEecC
Confidence 455566666554332222221111 1 1234444544444 677776666666666666666654 244455444
Q ss_pred h
Q 023179 136 A 136 (286)
Q Consensus 136 ~ 136 (286)
.
T Consensus 238 ~ 238 (298)
T 3tb6_A 238 D 238 (298)
T ss_dssp C
T ss_pred C
Confidence 4
No 342
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=39.77 E-value=52 Score=25.71 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=56.7
Q ss_pred CCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC---CccEEEEeC---------HHHHHHHHHHHHHcC
Q 023179 58 ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT---IFDWIIITS---------PEAGSVFLEAWKEAG 125 (286)
Q Consensus 58 ~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~---~~d~IvFTS---------~~av~~~~~~l~~~~ 125 (286)
+.++..++.+.|+++|+.+..+ +..+......+...++.++ .+|.++... +-.-+.|...+...+
T Consensus 35 ~~~g~~~~L~~L~~~g~~~~i~---Tn~~~~~~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~ 111 (189)
T 3ib6_A 35 LRKNAKETLEKVKQLGFKQAIL---SNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNALQ 111 (189)
T ss_dssp BCTTHHHHHHHHHHTTCEEEEE---ECCSSCCHHHHHHHHHHTTCGGGEEEEEECCTTSSTTCCCTTSHHHHHHHHHHHT
T ss_pred eCcCHHHHHHHHHHCCCEEEEE---ECCCccchHHHHHHHHhcCchhheEEEEEccccccccCCCCcCHHHHHHHHHHcC
Confidence 4456788889999999765432 2222111133344443332 466655443 223455666666667
Q ss_pred CCCcEEEEEChh-h--HHHHHHhhhccCCCCceeccCC
Q 023179 126 TPNVRIGVVGAG-T--ASIFEEVIQSSKCSLDVAFSPS 160 (286)
Q Consensus 126 ~~~~~i~aVG~~-T--a~~L~~~~~~~~~G~~~~~~~~ 160 (286)
.+...++.||.. . .++.++. |+....+..
T Consensus 112 ~~~~~~l~VGD~~~~Di~~A~~a------G~~~i~v~~ 143 (189)
T 3ib6_A 112 IDKTEAVMVGNTFESDIIGANRA------GIHAIWLQN 143 (189)
T ss_dssp CCGGGEEEEESBTTTTHHHHHHT------TCEEEEECC
T ss_pred CCcccEEEECCCcHHHHHHHHHC------CCeEEEECC
Confidence 777889999987 3 4666777 998877654
No 343
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=39.61 E-value=67 Score=27.60 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=53.4
Q ss_pred CCeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE-eCHHHHHHHHHHHHH
Q 023179 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAWKE 123 (286)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvF-TS~~av~~~~~~l~~ 123 (286)
.++|.+...... ...+.+.|+++|+.+...-.+.... .|.......+.. ...|.|++ .+...+..+++.+.+
T Consensus 139 ~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~-~d~~~~~~~l~~-~~~d~v~~~~~~~~a~~~~~~~~~ 216 (368)
T 4eyg_A 139 IKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLAN-PDFAPFLQRMKD-AKPDAMFVFVPAGQGGNFMKQFAE 216 (368)
T ss_dssp CCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSS-CCCHHHHHHHHH-HCCSEEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCC-CcHHHHHHHHHh-cCCCEEEEeccchHHHHHHHHHHH
Confidence 466666544321 3567778889998876543333221 233333333322 45788887 566666678888888
Q ss_pred cCCCC--cEEEEECh-hhHHHHHH
Q 023179 124 AGTPN--VRIGVVGA-GTASIFEE 144 (286)
Q Consensus 124 ~~~~~--~~i~aVG~-~Ta~~L~~ 144 (286)
.++.. ++++..+. .+...++.
T Consensus 217 ~g~~~~~v~~~~~~~~~~~~~~~~ 240 (368)
T 4eyg_A 217 RGLDKSGIKVIGPGDVMDDDLLNS 240 (368)
T ss_dssp TTGGGTTCEEEEETTTTCHHHHTT
T ss_pred cCCCcCCceEEecCcccCHHHHHh
Confidence 77642 66776653 34444443
No 344
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=39.60 E-value=61 Score=27.99 Aligned_cols=149 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred hHHHHHHhcCCCccEEE-EeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHH---HHhhhccCCCCceeccCC-CCCHH
Q 023179 91 DRLSSVLNADTIFDWII-ITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIF---EEVIQSSKCSLDVAFSPS-KATGK 165 (286)
Q Consensus 91 ~~l~~~l~~~~~~d~Iv-FTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L---~~~~~~~~~G~~~~~~~~-~~~~e 165 (286)
..+.+.+ ..+..|.|| ..+..........+.+. +++++..+......- ... ..-..+.+. ...+.
T Consensus 79 ~~~~~l~-~~~~v~~iig~~~s~~~~~~~~~~~~~---~ip~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 148 (386)
T 3sg0_A 79 QNARKLL-SEEKVDVLIGSSLTPVSLPLIDIAAEA---KTPLMTMAAAAILVAPMDERR------KWVYKVVPNDDIMAE 148 (386)
T ss_dssp HHHHHHH-HTSCCSEEECCSSHHHHHHHHHHHHHT---TCCEEECCCCGGGTCSCCTTG------GGEEECSCCHHHHHH
T ss_pred HHHHHHH-hhcCceEEECCCCchhHHHHHHHHHhc---CCeEEEecCCCccccccCCCC------CcEEecCCCcHHHHH
Q ss_pred HHHHhcccCCCCCCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeCh-HH
Q 023179 166 ILASELPKNGKKKCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP-SA 239 (286)
Q Consensus 166 ~L~~~L~~~~~~~~rvL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~-sa 239 (286)
.+++.|.+... +||.++..+. ..+.+.+.|++.|++|.....|.....+....-..-....+|+|++.+. ..
T Consensus 149 ~~~~~l~~~g~--~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~dav~~~~~~~~ 226 (386)
T 3sg0_A 149 AIGKYIAKTGA--KKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTP 226 (386)
T ss_dssp HHHHHHHHTTC--CEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHTCCSEEEEECCSGG
T ss_pred HHHHHHHhcCC--CEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhcCCCEEEEecCcch
Q ss_pred HHHHHHHhcccc
Q 023179 240 VRSWVNLISDTE 251 (286)
Q Consensus 240 v~~~~~~~~~~~ 251 (286)
+-.++..+.+.+
T Consensus 227 a~~~~~~~~~~g 238 (386)
T 3sg0_A 227 AVLPQKALRERG 238 (386)
T ss_dssp GHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
No 345
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=39.57 E-value=34 Score=29.24 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=47.4
Q ss_pred cccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEee-----eCCCchHHHH---HHhcCCCccEEE----E
Q 023179 42 TSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHA-----QGPDTDRLSS---VLNADTIFDWII----I 108 (286)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~-----~~~~~~~l~~---~l~~~~~~d~Iv----F 108 (286)
.++...+.|+.+|||-.... +..+++.|.+.|++|+.+-.-... ...+.+.+.+ .++... .+..+ +
T Consensus 20 ~~m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv 98 (299)
T 3t7c_A 20 GSMAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG-RRIIASQVDV 98 (299)
T ss_dssp --CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT-CCEEEEECCT
T ss_pred cccccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC-CceEEEECCC
Confidence 34556788999999987653 678999999999998754211000 0011222332 232221 22222 3
Q ss_pred eCHHHHHHHHHHHHH
Q 023179 109 TSPEAGSVFLEAWKE 123 (286)
Q Consensus 109 TS~~av~~~~~~l~~ 123 (286)
++..+++.+++.+.+
T Consensus 99 ~~~~~v~~~~~~~~~ 113 (299)
T 3t7c_A 99 RDFDAMQAAVDDGVT 113 (299)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 788888888876654
No 346
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*
Probab=39.38 E-value=87 Score=25.44 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=41.7
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-Cc-cEEE--EeCHHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IF-DWII--ITSPEAGSVFLEAW 121 (286)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~-~~-d~Iv--FTS~~av~~~~~~l 121 (286)
.+.|++||||-.... +..+++.|.++|++|+.+- . +.+.+.+..+.++ .. .++. ++++.+++.+++.+
T Consensus 8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~---r----~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (254)
T 2wsb_A 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILID---R----EAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEA 80 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE---S----CHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe---C----CHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHH
Confidence 467899999987653 5789999999999876431 1 1122222221111 11 1111 36778887777666
Q ss_pred HH
Q 023179 122 KE 123 (286)
Q Consensus 122 ~~ 123 (286)
.+
T Consensus 81 ~~ 82 (254)
T 2wsb_A 81 EA 82 (254)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 347
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=39.37 E-value=45 Score=26.53 Aligned_cols=74 Identities=18% Similarity=0.133 Sum_probs=43.9
Q ss_pred CeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH-H-HHH------HHHHH
Q 023179 51 PKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA-G-SVF------LEAWK 122 (286)
Q Consensus 51 ~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a-v-~~~------~~~l~ 122 (286)
++|+|..-.+.-....+.|++.|+++..++. . + .+..+|.||++-... + ..+ .+.++
T Consensus 2 m~I~il~~~~~~~~~~~~l~~~g~~~~~~~~------~--~-------~l~~~d~iil~GG~~~~~~~~~~~~~~~~~i~ 66 (196)
T 2nv0_A 2 LTIGVLGLQGAVREHIHAIEACGAAGLVVKR------P--E-------QLNEVDGLILPGGESTTMRRLIDTYQFMEPLR 66 (196)
T ss_dssp CEEEEECSSSCCHHHHHHHHHTTCEEEEECS------G--G-------GGGGCSEEEECCSCHHHHHHHHHHTTCHHHHH
T ss_pred cEEEEEEccCCcHHHHHHHHHCCCEEEEeCC------h--H-------HHhhCCEEEECCCChhhHHHHhhhHHHHHHHH
Confidence 6788886544445666999999998776643 1 1 234689999986532 2 111 11111
Q ss_pred HcCCCCcEEEEEChhhH
Q 023179 123 EAGTPNVRIGVVGAGTA 139 (286)
Q Consensus 123 ~~~~~~~~i~aVG~~Ta 139 (286)
+....+.+++.|.-+-.
T Consensus 67 ~~~~~~~pilgIC~G~q 83 (196)
T 2nv0_A 67 EFAAQGKPMFGTCAGLI 83 (196)
T ss_dssp HHHHTTCCEEEETHHHH
T ss_pred HHHHCCCcEEEECHHHH
Confidence 11113678887777764
No 348
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=39.33 E-value=1.2e+02 Score=25.67 Aligned_cols=74 Identities=11% Similarity=0.042 Sum_probs=46.4
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv----FTS~~av~~~~~~ 120 (286)
..+.|++||||-.... +..+++.|.+.|++|+.+- ... ...+.+.+.+......+..+ ++++.+++.+++.
T Consensus 37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~---r~~-~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 112 (293)
T 3rih_A 37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAA---RSP-RELSSVTAELGELGAGNVIGVRLDVSDPGSCADAART 112 (293)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE---SSG-GGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE---CCH-HHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHH
Confidence 3567999999987653 6789999999999876431 111 11233444443322122332 3688888888877
Q ss_pred HHH
Q 023179 121 WKE 123 (286)
Q Consensus 121 l~~ 123 (286)
+.+
T Consensus 113 ~~~ 115 (293)
T 3rih_A 113 VVD 115 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 349
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=39.28 E-value=52 Score=27.47 Aligned_cols=71 Identities=18% Similarity=0.108 Sum_probs=33.8
Q ss_pred CCCEEEEEcCC---CChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEE----EeChHHHHHHHHHhcc
Q 023179 177 KKCTVLYPASA---KASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVA----VASPSAVRSWVNLISD 249 (286)
Q Consensus 177 ~~~rvL~~~g~---~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~Iv----ftS~sav~~~~~~~~~ 249 (286)
.||.+|+..+. .-...+...|.+.|++| +.+|++........+.+++.....+.. ++++..++.+++...+
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~V--vi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKL--VFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK 82 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEE--EEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEE--EEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 34555555522 22345677777777776 455554321111111222222223333 2567777776665443
No 350
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Probab=39.18 E-value=1.9e+02 Score=25.01 Aligned_cols=165 Identities=15% Similarity=0.138 Sum_probs=90.1
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH-HHHHHHHHHcCCC
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG-SVFLEAWKEAGTP 127 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av-~~~~~~l~~~~~~ 127 (286)
..++|+++.+.. +...+.|++.|+++.. ....+.+++.+. +.++|.++..+...+ +.+++.+ +
T Consensus 4 ~~mkil~~~~~~--~~~~~~l~~~~~~v~~------~~~~~~~~~~~~---~~~~d~~i~~~~~~~~~~~l~~~-----~ 67 (313)
T 2ekl_A 4 YTVKALITDPID--EILIKTLREKGIQVDY------MPEISKEELLNI---IGNYDIIVVRSRTKVTKDVIEKG-----K 67 (313)
T ss_dssp CCCEEEECSCCC--HHHHHHHHHTTCEEEE------CTTCCHHHHHHH---GGGCSEEEECSSSCBCHHHHHHC-----T
T ss_pred cceEEEEECCCC--HHHHHHHHhCCcEEEe------CCCCCHHHHHHH---hcCCeEEEEcCCCCCCHHHHhhC-----C
Confidence 357899987643 4556788888866532 111122344333 467898887542211 1233322 3
Q ss_pred CcEEE-EEChhh----HHHHHHhhhccCCCCceeccCCCCCHHHHHHhc-------cc-------------C------CC
Q 023179 128 NVRIG-VVGAGT----ASIFEEVIQSSKCSLDVAFSPSKATGKILASEL-------PK-------------N------GK 176 (286)
Q Consensus 128 ~~~i~-aVG~~T----a~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L-------~~-------------~------~~ 176 (286)
++|++ ..|.++ .+++.+. |+.+...|. .+++.+++.. .+ | ..
T Consensus 68 ~Lk~I~~~~~G~d~id~~~~~~~------gi~v~n~~g-~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l 140 (313)
T 2ekl_A 68 KLKIIARAGIGLDNIDTEEAEKR------NIKVVYAPG-ASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLEL 140 (313)
T ss_dssp TCCEEEECSSCCTTBCHHHHHHT------TCEEECCTT-TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCC
T ss_pred CCeEEEEcCCCCCccCHHHHHhC------CeEEEeCCC-CCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCC
Confidence 45544 344333 3566777 998877664 3444443221 00 1 23
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCC-------cHHHHHHcCCCCEEEEeChHH
Q 023179 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-------DQTVLKQALSIPVVAVASPSA 239 (286)
Q Consensus 177 ~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~-------~~~~~~~~~~~d~IvftS~sa 239 (286)
.|+++.+++...-...+...|+..|++|. +|.+.+.... .....+.+...|+|++.-|..
T Consensus 141 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~---~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~ 207 (313)
T 2ekl_A 141 AGKTIGIVGFGRIGTKVGIIANAMGMKVL---AYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVS 207 (313)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEE---EECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHCCCEEE---EECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCC
Confidence 67899999766666778999999998764 4443321100 000111124678888887743
No 351
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=39.17 E-value=38 Score=28.25 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=46.1
Q ss_pred ccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHH
Q 023179 43 SASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFL 118 (286)
Q Consensus 43 ~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~-~~d~Iv--FTS~~av~~~~ 118 (286)
++...+.|+++|||-... -...+++.|.++|++|+.+- ... ...+.+.+.+.... ...++. ++++.+++.++
T Consensus 4 ~m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~---r~~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 79 (264)
T 3ucx_A 4 SMGGLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAA---RTV-ERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLV 79 (264)
T ss_dssp ---CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEE---SCH-HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CcCCCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEe---CCH-HHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 355678899999998765 36789999999999876431 110 01122333332221 222221 47888888888
Q ss_pred HHHHHc
Q 023179 119 EAWKEA 124 (286)
Q Consensus 119 ~~l~~~ 124 (286)
+.+.+.
T Consensus 80 ~~~~~~ 85 (264)
T 3ucx_A 80 DETMKA 85 (264)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776553
No 352
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=39.04 E-value=48 Score=28.05 Aligned_cols=63 Identities=17% Similarity=0.100 Sum_probs=35.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe--------CHHHHHHHHHHHHHcCCCCcEEEEEC
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT--------SPEAGSVFLEAWKEAGTPNVRIGVVG 135 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT--------S~~av~~~~~~l~~~~~~~~~i~aVG 135 (286)
.+.+.|++.|++|...-+-......+ + + .+..||.|||. ++..++.|.+++.. +..++++.
T Consensus 36 ~i~~~L~~~gf~V~~~t~dd~~~~~~-~---~---~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V~~----GgG~vgiH 104 (252)
T 1t0b_A 36 VIASYLAEAGFDAATAVLDEPEHGLT-D---E---VLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLE----GMGLIVLH 104 (252)
T ss_dssp HHHHHHHHTTCEEEEEESSSGGGGCC-H---H---HHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHT----TCEEEEEG
T ss_pred HHHHHHhhCCcEEEEEeccCccccCC-H---h---HHhcCCEEEEecCCCCCcCCHHHHHHHHHHHHc----CCCEEEEc
Confidence 45888999998887533211111111 1 1 24689999994 35555555554432 55666665
Q ss_pred hh
Q 023179 136 AG 137 (286)
Q Consensus 136 ~~ 137 (286)
.+
T Consensus 105 ~a 106 (252)
T 1t0b_A 105 SG 106 (252)
T ss_dssp GG
T ss_pred cc
Confidence 44
No 353
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=38.97 E-value=29 Score=29.05 Aligned_cols=87 Identities=10% Similarity=0.137 Sum_probs=53.8
Q ss_pred CCeEEEeCCCCc-------hHHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHH
Q 023179 50 NPKVVVTRERGK-------NGKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFL 118 (286)
Q Consensus 50 g~~VLitR~~~~-------~~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~~~~~d~IvFTS~~av~~~~ 118 (286)
.++|++..+... ..-+.+.|+++|..+.....+... .+. +.+.+.+.....+|+|+..+-..+..++
T Consensus 127 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~ 204 (288)
T 3gv0_A 127 RKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIE--TPLEKIRDFGQRLMQSSDRPDGIVSISGSSTIALV 204 (288)
T ss_dssp CCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTT--SCHHHHHHHHHHHTTSSSCCSEEEESCHHHHHHHH
T ss_pred CCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccc--cchHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHH
Confidence 456776654432 244567788888766433222211 121 2345555444578999999888887888
Q ss_pred HHHHHcCC---CCcEEEEEChhh
Q 023179 119 EAWKEAGT---PNVRIGVVGAGT 138 (286)
Q Consensus 119 ~~l~~~~~---~~~~i~aVG~~T 138 (286)
+.+.+.|+ +++.++..+...
T Consensus 205 ~al~~~g~~vP~di~vig~d~~~ 227 (288)
T 3gv0_A 205 AGFEAAGVKIGEDVDIVSKQSAE 227 (288)
T ss_dssp HHHHTTTCCTTTSCEEEEEESST
T ss_pred HHHHHcCCCCCCceEEEEecChH
Confidence 88888876 467777776654
No 354
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=38.84 E-value=40 Score=27.98 Aligned_cols=85 Identities=16% Similarity=0.085 Sum_probs=51.6
Q ss_pred CCeEEEeCCCC-------chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHH
Q 023179 50 NPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK 122 (286)
Q Consensus 50 g~~VLitR~~~-------~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~ 122 (286)
.++|.+..+.. ...-+.+.|+++|..+... .+.... +.+.+.+.|+....+|+|+.++-..+...++.+.
T Consensus 122 ~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~~~~--~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~ 198 (277)
T 3hs3_A 122 IEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ETPENN--PYISAQSALNKSNQFDAIITVNDLYAAEIIKEAK 198 (277)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECCSSC--HHHHHHHHHHTGGGCSEEECSSHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-CccCCc--hHHHHHHHHcCCCCCCEEEECCHHHHHHHHHHHH
Confidence 34666654332 1245667788888877654 222111 1345556664446789998888877777888888
Q ss_pred HcCCC---CcEEEEEChh
Q 023179 123 EAGTP---NVRIGVVGAG 137 (286)
Q Consensus 123 ~~~~~---~~~i~aVG~~ 137 (286)
+.|.. ++.++..+..
T Consensus 199 ~~g~~vP~di~vig~d~~ 216 (277)
T 3hs3_A 199 RRNLKIPDDFQLVGYDNN 216 (277)
T ss_dssp HTTCCTTTTCEEECSBCC
T ss_pred HcCCCCCCceEEEeeCCc
Confidence 87763 5555555543
No 355
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=38.84 E-value=76 Score=27.28 Aligned_cols=93 Identities=14% Similarity=0.045 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCCCC-cHHHHH-HcCCCCEEEEeChHHHHHHHHHhccccCCC
Q 023179 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHV-DQTVLK-QALSIPVVAVASPSAVRSWVNLISDTEQWS 254 (286)
Q Consensus 177 ~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~-~~~~~~-~~~~~d~IvftS~sav~~~~~~~~~~~~~~ 254 (286)
.++||.++..- ..+.+.|+ .++ ++.+++..+.+.. +....+ .+...|+|+.|.++-++.-++.+-+.-...
T Consensus 140 ~g~kV~vIG~~---P~i~~~l~-~~~---~v~V~d~~p~~g~~p~~~~e~ll~~aD~viiTGsTlvN~Ti~~lL~~~~~a 212 (270)
T 2h1q_A 140 KGKKVGVVGHF---PHLESLLE-PIC---DLSILEWSPEEGDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRNA 212 (270)
T ss_dssp TTSEEEEESCC---TTHHHHHT-TTS---EEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTS
T ss_pred CCCEEEEECCC---HHHHHHHh-CCC---CEEEEECCCCCCCCChHHHHHHhhcCCEEEEEeeeeecCCHHHHHHhCccC
Confidence 56899999875 33566564 454 5677777776432 222222 357999999999998876665544321113
Q ss_pred ceEEEeCHHHHH--HHHHcCCCeE
Q 023179 255 NSVACIGETTAS--AAKRLGLKNV 276 (286)
Q Consensus 255 ~~iv~IG~~Ta~--~l~~~G~~~v 276 (286)
..++.+||+|.- .+.++|+..+
T Consensus 213 ~~vvl~GPS~p~~P~lf~~Gv~~l 236 (270)
T 2h1q_A 213 RRITLVGPGTPLAPVLFEHGLQEL 236 (270)
T ss_dssp SEEEEESTTCCCCGGGGGTTCSEE
T ss_pred CeEEEEecChhhhHHHHhcCcCEE
Confidence 478899998642 2345666654
No 356
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=38.82 E-value=29 Score=27.02 Aligned_cols=73 Identities=8% Similarity=0.113 Sum_probs=38.8
Q ss_pred eEEEeCCCCchHHHHHH----HHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH--------HHHHHH
Q 023179 52 KVVVTRERGKNGKLIKA----LAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA--------GSVFLE 119 (286)
Q Consensus 52 ~VLitR~~~~~~~l~~~----L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a--------v~~~~~ 119 (286)
.|++.-..+....+++. |.+.|+++..+++ ... +. ..+..+|.|||-+|.= +..|++
T Consensus 13 ~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~---~~~-~~-------~~l~~~d~ii~g~pt~g~G~~p~~~~~f~~ 81 (167)
T 1ykg_A 13 TIISASQTGNARRVAEALRDDLLAAKLNVKLVNA---GDY-KF-------KQIASEKLLIVVTSTQGEGEPPEEAVALHK 81 (167)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEG---GGC-CG-------GGGGGCSEEEEEEECBGGGBCCGGGHHHHH
T ss_pred EEEEECCchHHHHHHHHHHHHHHHCCCceEEeeh---hhC-CH-------HHhccCCeEEEEEcccCCCcCChhHHHHHH
Confidence 44544555555555544 5555776654332 111 11 1245688888866533 566777
Q ss_pred HHHH---cCCCCcEEEEEC
Q 023179 120 AWKE---AGTPNVRIGVVG 135 (286)
Q Consensus 120 ~l~~---~~~~~~~i~aVG 135 (286)
.+.. ..+.+.++++.|
T Consensus 82 ~l~~~~~~~l~~k~~avfg 100 (167)
T 1ykg_A 82 FLFSKKAPKLENTAFAVFS 100 (167)
T ss_dssp HHTSTTCCCCTTCEEEEEE
T ss_pred HHHhccccccCCCEEEEEe
Confidence 6653 234466666665
No 357
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=38.82 E-value=83 Score=26.10 Aligned_cols=73 Identities=14% Similarity=0.024 Sum_probs=45.0
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEAW 121 (286)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv----FTS~~av~~~~~~l 121 (286)
.+.|++||||-.... ...+++.|.++|++|+.+- ... ...+.+.+.++.....+..+ ++++.+++.+++.+
T Consensus 7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~---r~~-~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (262)
T 3pk0_A 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAG---RST-ADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRA 82 (262)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE---SCH-HHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe---CCH-HHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 578999999987653 6789999999999876431 110 01122333343322123333 36888888888766
Q ss_pred HH
Q 023179 122 KE 123 (286)
Q Consensus 122 ~~ 123 (286)
.+
T Consensus 83 ~~ 84 (262)
T 3pk0_A 83 VE 84 (262)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 358
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=38.76 E-value=30 Score=30.01 Aligned_cols=69 Identities=22% Similarity=0.130 Sum_probs=46.7
Q ss_pred CCHHHHHHhcccCCCCCCEEEEEc-CCCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChH
Q 023179 162 ATGKILASELPKNGKKKCTVLYPA-SAKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPS 238 (286)
Q Consensus 162 ~~~e~L~~~L~~~~~~~~rvL~~~-g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~s 238 (286)
.|..+.++.|......|++++++. |+.....+...|...|++|..+..++ ...++ .....|+|+-+-+.
T Consensus 134 cTp~gv~~lL~~~~l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t-----~~L~~---~~~~ADIVI~Avg~ 203 (276)
T 3ngx_A 134 ATPRAVIDIMDYYGYHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT-----KDIGS---MTRSSKIVVVAVGR 203 (276)
T ss_dssp HHHHHHHHHHHHHTCCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-----SCHHH---HHHHSSEEEECSSC
T ss_pred CcHHHHHHHHHHhCcCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc-----ccHHH---hhccCCEEEECCCC
Confidence 567787777765546789999997 45566778999999999886654321 11222 23477888877654
No 359
>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*
Probab=38.64 E-value=95 Score=26.20 Aligned_cols=122 Identities=11% Similarity=-0.036 Sum_probs=66.7
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHh
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~ 145 (286)
-..+++.|++..+.++ ++. ..+...+.+.++ ..+++.+.+|-|.=... +..+.+. + ...+..
T Consensus 21 n~~~~~~gl~~~y~~~-~~~-~~~l~~~i~~~~-~~~~~G~nVT~P~K~~v-~~~ld~~-------------~-~~A~~i 82 (272)
T 1p77_A 21 NKLAAQTHQTMEYIAK-LGD-LDAFEQQLLAFF-EEGAKGCNITSPFKERA-YQLADEY-------------S-QRAKLA 82 (272)
T ss_dssp HHHHHHTTCCEEEEEE-ECC-TTTHHHHHHHHH-HTTCCEEEECTTCHHHH-HHHCSEE-------------C-HHHHHH
T ss_pred HHHHHHCCcCeEEEEE-EcC-HHHHHHHHHHHH-hCCCCEEEECcCCHHHH-HHHHhhc-------------C-HHHHHh
Confidence 3567788999888777 332 222333333332 35789999999976554 3433221 0 111222
Q ss_pred hhccCCCCceecc-------CCCCCHHHHHHhcccCC--CCCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeee
Q 023179 146 IQSSKCSLDVAFS-------PSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTE 213 (286)
Q Consensus 146 ~~~~~~G~~~~~~-------~~~~~~e~L~~~L~~~~--~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~ 213 (286)
++++.... ....+..++...|.+.. ..+++++++.+......+...|.+.|.+ +.++.+.
T Consensus 83 -----gavNti~~~~~g~l~g~NTD~~G~~~~L~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~---v~v~~R~ 151 (272)
T 1p77_A 83 -----EACNTLKKLDDGKLYADNTDGIGLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQN---IVLANRT 151 (272)
T ss_dssp -----TCCSEEEECTTSCEEEECCHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCE---EEEEESS
T ss_pred -----CCceEEEEccCCEEEEecCCHHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCE---EEEEECC
Confidence 02222111 11134677777776532 2567888887655555677778888854 4445443
No 360
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=38.59 E-value=1.1e+02 Score=25.15 Aligned_cols=33 Identities=15% Similarity=0.053 Sum_probs=26.3
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEe
Q 023179 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (286)
.+.+++||||-.... +..+++.|.++|++|..+
T Consensus 11 ~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~ 44 (266)
T 1xq1_A 11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTC 44 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 467899999987653 578999999999887643
No 361
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=38.58 E-value=1.3e+02 Score=23.49 Aligned_cols=111 Identities=14% Similarity=0.177 Sum_probs=68.3
Q ss_pred CeEEEeCCCCc---hHHHHHHHHhCCCcEEEeceEEeeeCCCch----HHHHHHhcCCCcc--EEEEeCHHHHHHHHHHH
Q 023179 51 PKVVVTRERGK---NGKLIKALAKHRIDCLELPLIQHAQGPDTD----RLSSVLNADTIFD--WIIITSPEAGSVFLEAW 121 (286)
Q Consensus 51 ~~VLitR~~~~---~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~----~l~~~l~~~~~~d--~IvFTS~~av~~~~~~l 121 (286)
|+|.|-..... .+.+.+.|++.|++|+.+-.+..++. |+. .+-+.+ ..+.+| .+|.-|..++....+
T Consensus 1 MkI~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~-dYpd~a~~va~~V-~~g~~d~GIliCGTGiG~siaAN-- 76 (149)
T 3he8_A 1 MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESV-DYPDFGLKVAEAV-KSGECDRGIVICGTGLGISIAAN-- 76 (149)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCC-CHHHHHHHHHHHH-HTTSSSEEEEEESSSHHHHHHHH--
T ss_pred CEEEEEECchhHHHHHHHHHHHHHCCCEEEEcCCCCCCCC-CHHHHHHHHHHHH-HcCCCCEEEEEcCCcHHHHHHhh--
Confidence 35555554432 45788889999999999988765442 332 233334 234455 445555555554333
Q ss_pred HHcCCCCcEEEE-EChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 122 KEAGTPNVRIGV-VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 122 ~~~~~~~~~i~a-VG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
..++++.+. --+.+|+..+++ . .-++...+.+..+..++..|.+
T Consensus 77 ---Kv~GIRAAl~~d~~sA~~ar~h---N--naNVl~lG~rvig~~~A~~iv~ 121 (149)
T 3he8_A 77 ---KVPGIRAAVCTNSYMARMSREH---N--DANILALGERVVGLDLALDIVD 121 (149)
T ss_dssp ---TSTTCCEEECSSHHHHHHHHHT---T--CCSEEEEETTTSCHHHHHHHHH
T ss_pred ---cCCCeEEEEeCCHHHHHHHHHh---C--CCcEEEEcccccCHHHHHHHHH
Confidence 346777764 467888888888 2 4455556777777777776654
No 362
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=38.57 E-value=32 Score=29.33 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=37.0
Q ss_pred CCCEEEEeChHHHH----HHHHHhccccCCCceEEEeCHH----HHHHHHHcCCCeEEeCCCCC
Q 023179 228 SIPVVAVASPSAVR----SWVNLISDTEQWSNSVACIGET----TASAAKRLGLKNVYYPTHPG 283 (286)
Q Consensus 228 ~~d~IvftS~sav~----~~~~~~~~~~~~~~~iv~IG~~----Ta~~l~~~G~~~v~~~~~ps 283 (286)
+.|.++|.||+.+- .--+.+.. .+.+.++||.. ..+++++.||--++++.+|=
T Consensus 64 ~pDfvI~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K~kd~l~~~g~GYIivk~DpM 124 (283)
T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREMLAD---SEYPAVIIGDAPGLKVKDEMEEQGLGYILVKPDAM 124 (283)
T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHT---SSSCEEEEEEGGGGGGHHHHHHTTCEEEEETTSCC
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHh---CCCCEEEEcCCcchhhHHHHHhcCCcEEEEecCcc
Confidence 89999999987431 11122222 26788888543 37899999999988887763
No 363
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=38.55 E-value=99 Score=21.56 Aligned_cols=108 Identities=10% Similarity=0.083 Sum_probs=61.1
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHHc
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l~~~ 124 (286)
+++||+.-... ....+...|+..|+++... .+.++..+.+ ....+|.|+.- ..++.+ +++.+.+.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~-~~~~~dlii~D~~~p~~~g~~-~~~~lr~~ 71 (120)
T 3f6p_A 2 DKKILVVDDEKPIADILEFNLRKEGYEVHCA--------HDGNEAVEMV-EELQPDLILLDIMLPNKDGVE-VCREVRKK 71 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHH-HTTCCSEEEEETTSTTTHHHH-HHHHHHTT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCEEEEEe--------CCHHHHHHHH-hhCCCCEEEEeCCCCCCCHHH-HHHHHHhc
Confidence 46888887664 3567778888888765421 1233444455 34578988874 235655 44555543
Q ss_pred CCCCcEEEE-EChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 125 GTPNVRIGV-VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 125 ~~~~~~i~a-VG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
. ..++++ .|........+.++. |.. ++..+..+.+.|...+..
T Consensus 72 -~-~~~ii~~t~~~~~~~~~~~~~~---ga~-~~l~KP~~~~~l~~~i~~ 115 (120)
T 3f6p_A 72 -Y-DMPIIMLTAKDSEIDKVIGLEI---GAD-DYVTKPFSTRELLARVKA 115 (120)
T ss_dssp -C-CSCEEEEEESSCHHHHHHHHHT---TCC-EEEEESCCHHHHHHHHHH
T ss_pred -C-CCCEEEEECCCChHHHHHHHhC---Ccc-eeEcCCCCHHHHHHHHHH
Confidence 2 445544 444433333222211 654 466667788888776643
No 364
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=38.49 E-value=35 Score=28.66 Aligned_cols=35 Identities=11% Similarity=0.090 Sum_probs=28.4
Q ss_pred CCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 45 ~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
..++.|++||||-... -...+++.|.++|++|+.+
T Consensus 8 ~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~ 43 (278)
T 3sx2_A 8 EGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAV 43 (278)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 4678899999998765 3678999999999998754
No 365
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}
Probab=38.21 E-value=56 Score=25.61 Aligned_cols=59 Identities=10% Similarity=0.152 Sum_probs=37.6
Q ss_pred CeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceE---EeeeCCCchHHHHHHhcCCCccEEEEeC
Q 023179 51 PKVVVTRERGK-NGKLIKALAKHRIDCLELPLI---QHAQGPDTDRLSSVLNADTIFDWIIITS 110 (286)
Q Consensus 51 ~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~---~~~~~~~~~~l~~~l~~~~~~d~IvFTS 110 (286)
|+||||-..+. +..+++.|. +|.++..+--- -.....+.+.+.+.++..+..|.||...
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~a 66 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSAT 66 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECC
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECC
Confidence 48999987753 678889998 99987654211 0112223455666665555678888764
No 366
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=38.20 E-value=18 Score=31.02 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=38.5
Q ss_pred HHHHHHHhCCCeeEEEEeeeeecCC---------------------------------CCcHHHHHHcCCCCEEEEeCh-
Q 023179 192 EIEEGLSNRGFEVVRLNTYTTEPVH---------------------------------HVDQTVLKQALSIPVVAVASP- 237 (286)
Q Consensus 192 ~L~~~L~~~G~~V~~~~vY~~~~~~---------------------------------~~~~~~~~~~~~~d~IvftS~- 237 (286)
.+.+.|++.|.+|+.+.+|.....+ +......+.+...|.|||.+|
T Consensus 24 ~~~~~l~~~g~eV~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~l~~AD~IV~~~P~ 103 (273)
T 1d4a_A 24 AAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKLKDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPL 103 (273)
T ss_dssp HHHHHHHHTTCEEEEEETTTTTCCCCCCGGGBCSCCSSTTSCCHHHHHHHHHHHTCBCHHHHHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHhCCCeEEEEEccccCCCCcCCHHHHHhhccCcccccchhhhhhhhhcccCcHHHHHHHHHHHhCCEEEEECch
Confidence 4556677889999999998764200 001112223568999999885
Q ss_pred ------HHHHHHHHHhc
Q 023179 238 ------SAVRSWVNLIS 248 (286)
Q Consensus 238 ------sav~~~~~~~~ 248 (286)
..++.|++.+-
T Consensus 104 y~~s~Pa~LK~~iDrv~ 120 (273)
T 1d4a_A 104 QWFGVPAILKGWFERVF 120 (273)
T ss_dssp BTTBCCHHHHHHHHHHS
T ss_pred hhccCCHHHHHHHHHHH
Confidence 88999999874
No 367
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=38.20 E-value=36 Score=29.51 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=46.3
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---H----HHHHHHHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A----GSVFLEAW 121 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~---a----v~~~~~~l 121 (286)
.|.+|+++.+......+...++..|+++..+|+.......|.+.+++.+.. .....|++++++ + ++.+.+.+
T Consensus 85 ~gd~vlv~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~~v~~~~~~nptG~~~~l~~i~~~~ 163 (385)
T 2bkw_A 85 PNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ-NSYGAVTVTHVDTSTAVLSDLKAISQAI 163 (385)
T ss_dssp SCCEEEEECSSHHHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH-SCCSEEEEESEETTTTEECCHHHHHHHH
T ss_pred CCCeEEEEcCCcchHHHHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc-CCCCEEEEEccCCCcCeEcCHHHHHHHH
Confidence 477888886543333444667778999998886311111355677777743 356788888876 3 34455555
Q ss_pred HHc
Q 023179 122 KEA 124 (286)
Q Consensus 122 ~~~ 124 (286)
+++
T Consensus 164 ~~~ 166 (385)
T 2bkw_A 164 KQT 166 (385)
T ss_dssp HHH
T ss_pred Hhh
Confidence 554
No 368
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=38.06 E-value=34 Score=28.07 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=51.0
Q ss_pred CeEEEeCCCCc-------hHHHHHHHHhC-CCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 023179 51 PKVVVTRERGK-------NGKLIKALAKH-RIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEA 120 (286)
Q Consensus 51 ~~VLitR~~~~-------~~~l~~~L~~~-G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~ 120 (286)
++|++...... ..-+.+.|+++ |+.+... +......+ .+.+.+.+.....+|+|+.++-..+..+++.
T Consensus 128 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~a 205 (276)
T 3ksm_A 128 RNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAA--PYAGDDRGAARSEMLRLLKETPTIDGLFTPNESTTIGALVA 205 (276)
T ss_dssp EEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEEC--CBCCSSHHHHHHHHHHHHHHCSCCCEEECCSHHHHHHHHHH
T ss_pred ceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEE--ecCCCcHHHHHHHHHHHHHhCCCceEEEECCchhhhHHHHH
Confidence 46666654322 23455666666 6555421 11111000 1345555655567899999988888778888
Q ss_pred HHHcCC-CCcEEEEEChhh
Q 023179 121 WKEAGT-PNVRIGVVGAGT 138 (286)
Q Consensus 121 l~~~~~-~~~~i~aVG~~T 138 (286)
+.+.|. +++.++..+...
T Consensus 206 l~~~g~p~di~vig~d~~~ 224 (276)
T 3ksm_A 206 IRQSGMSKQFGFIGFDQTE 224 (276)
T ss_dssp HHHTTCTTSSEEEEESCCH
T ss_pred HHHcCCCCCeEEEEeCCCH
Confidence 888886 467777777654
No 369
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=37.89 E-value=1.1e+02 Score=21.87 Aligned_cols=114 Identities=11% Similarity=-0.008 Sum_probs=64.9
Q ss_pred CCCeEEEeCCCCc-hHHHHHHHHhCCC--cEEEeceEEeeeCCCchHHHHHHhcC----CCccEEEEeC----HHHHHHH
Q 023179 49 SNPKVVVTRERGK-NGKLIKALAKHRI--DCLELPLIQHAQGPDTDRLSSVLNAD----TIFDWIIITS----PEAGSVF 117 (286)
Q Consensus 49 ~g~~VLitR~~~~-~~~l~~~L~~~G~--~v~~~P~~~~~~~~~~~~l~~~l~~~----~~~d~IvFTS----~~av~~~ 117 (286)
..++|||.-.... ...+...|+..|. .+.. ..+.++..+.+... ..+|.|++-- .++.+ +
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~--------~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~-~ 78 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQS--------VTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWE-L 78 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEE--------ESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHH-H
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeee--------cCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHH-H
Confidence 4578999987653 4567777877776 3221 12333344444321 5689888753 34555 5
Q ss_pred HHHHHHc---CCCCcEEEEEC-hhhHHHHHHhhhccCCC-CceeccCCCCCHHHHHHhcccCC
Q 023179 118 LEAWKEA---GTPNVRIGVVG-AGTASIFEEVIQSSKCS-LDVAFSPSKATGKILASELPKNG 175 (286)
Q Consensus 118 ~~~l~~~---~~~~~~i~aVG-~~Ta~~L~~~~~~~~~G-~~~~~~~~~~~~e~L~~~L~~~~ 175 (286)
++.+.+. .....+++++. ........+.++. | .. ++..+..+.+.|...|....
T Consensus 79 ~~~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~---g~~~-~~l~KP~~~~~L~~~i~~~~ 137 (146)
T 3ilh_A 79 IDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEAS---DWVD-YYVSKPLTANALNNLYNKVL 137 (146)
T ss_dssp HHHHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHC---SSCC-EEECSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhccCCCeEEEEeCCCChHHHHHHHhc---CCcc-eeeeCCCCHHHHHHHHHHHH
Confidence 5656652 23456665554 3333333333222 4 43 46677788999988886643
No 370
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A
Probab=37.64 E-value=43 Score=28.61 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=29.6
Q ss_pred cccCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 42 TSASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
+++...+.|++||||-..+ -+..+++.|.+.|.+|.-+
T Consensus 3 ~~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~ 41 (342)
T 1y1p_A 3 IDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGT 41 (342)
T ss_dssp STTCSSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcccCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 4555667899999998865 3678889999999988753
No 371
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=37.37 E-value=27 Score=28.02 Aligned_cols=61 Identities=16% Similarity=0.025 Sum_probs=32.9
Q ss_pred CeEEEeCCC----CchHHHHHHHHh---CCCcEEEeceEEeeeCC-------CchHHHHHHhcCCCccEEEEeCHH
Q 023179 51 PKVVVTRER----GKNGKLIKALAK---HRIDCLELPLIQHAQGP-------DTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 51 ~~VLitR~~----~~~~~l~~~L~~---~G~~v~~~P~~~~~~~~-------~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
++||+.-.. ..+..+++.+.+ .|.++..+-+... |.- ..+.+.+..+.+...|.|||.||.
T Consensus 3 ~kilii~gS~r~~s~t~~la~~~~~~~~~~~~v~~~dl~~l-p~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~ 77 (192)
T 3fvw_A 3 KRILFIVGSFSEGSFNRQLAKKAETIIGDRAQVSYLSYDRV-PFFNQDLETSVHPEVAHAREEVQEADAIWIFSPV 77 (192)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHHHHTTSSEEEECCCSSC-CCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCC
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHhcCCCCEEEEEeCccC-CCCCcccccCCcHHHHHHHHHHHhCCEEEEECcc
Confidence 466655332 234455555443 4777776655532 111 112344445556778999999884
No 372
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=37.16 E-value=1.2e+02 Score=26.09 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=27.6
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHh--CCCcEEEe
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAK--HRIDCLEL 79 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~--~G~~v~~~ 79 (286)
..+.+++||||-..+ -+..+++.|.+ .|.+|.-+
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~ 42 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVL 42 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEE
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEE
Confidence 457799999998765 36788889988 89998765
No 373
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}
Probab=37.15 E-value=37 Score=28.63 Aligned_cols=77 Identities=13% Similarity=0.044 Sum_probs=44.6
Q ss_pred ccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCC----ccEEE--EeCHHHHH
Q 023179 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTI----FDWII--ITSPEAGS 115 (286)
Q Consensus 43 ~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~----~d~Iv--FTS~~av~ 115 (286)
++...+.|++||||-.... ...+++.|.++|++|+.+- ... ...+.+.+.++.... ..++. ++++.+++
T Consensus 4 ~m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~---r~~-~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~ 79 (281)
T 3svt_A 4 SMQLSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVG---RNP-DKLAGAVQELEALGANGGAIRYEPTDITNEDETA 79 (281)
T ss_dssp ----CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE---SCH-HHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHH
T ss_pred CCccCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe---CCH-HHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHH
Confidence 4556788999999987653 6789999999999876431 110 011223333322221 11111 46788888
Q ss_pred HHHHHHHH
Q 023179 116 VFLEAWKE 123 (286)
Q Consensus 116 ~~~~~l~~ 123 (286)
.+++.+.+
T Consensus 80 ~~~~~~~~ 87 (281)
T 3svt_A 80 RAVDAVTA 87 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 374
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=36.97 E-value=1.7e+02 Score=25.08 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=75.2
Q ss_pred CCccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCC-CCHHHHHHhcccCCCCC
Q 023179 101 TIFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSK-ATGKILASELPKNGKKK 178 (286)
Q Consensus 101 ~~~d~IvFT-S~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~-~~~e~L~~~L~~~~~~~ 178 (286)
...+.||-. ++.........+.+. +++++..+..+...-.... . ..-..+.+.. ..+..+++.+.+. ..
T Consensus 70 ~~v~~iiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~~~~~~~~~--~--~~~f~~~~~~~~~~~~~~~~l~~~--g~ 140 (375)
T 3i09_A 70 GGLDLLVGGTNSATALSMNQVAAEK---KKVYINIGAGADTLTNEQC--T--PYTVHYAYDTMALAKGTGSAVVKQ--GG 140 (375)
T ss_dssp SCEEEEEECSCHHHHHHHHHHHHHH---TCEEEECSCCCGGGGTTTC--C--TTEEECSCCHHHHHHHHHHHHHHT--TC
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHc---CceEEEeCCCchhhhcccC--C--CcEEEeeCChHHHHHHHHHHHHHc--CC
Confidence 578888854 344444455555543 5677776644322211110 0 1111122221 1244566666554 44
Q ss_pred CEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeCh-HHHHHHHHHhccc
Q 023179 179 CTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVASP-SAVRSWVNLISDT 250 (286)
Q Consensus 179 ~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS~-sav~~~~~~~~~~ 250 (286)
+||.++..+.. .+.+.+.|++.|.+|.....|.... .+ ....+..+ ..+|+|++.+. ..+..++..+.+.
T Consensus 141 ~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~-~d-~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~ 218 (375)
T 3i09_A 141 KTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHPLSA-SD-FSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEF 218 (375)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTC-SC-CHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHT
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCCCCC-cc-HHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHc
Confidence 78888765542 4567888999999886665554322 22 22333322 57898876554 4666777777654
Q ss_pred c
Q 023179 251 E 251 (286)
Q Consensus 251 ~ 251 (286)
+
T Consensus 219 g 219 (375)
T 3i09_A 219 G 219 (375)
T ss_dssp T
T ss_pred C
Confidence 3
No 375
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=36.92 E-value=25 Score=30.54 Aligned_cols=62 Identities=10% Similarity=0.017 Sum_probs=35.4
Q ss_pred CCeEEEeCCC----CchHH----HHHHHHhCCCcEEEeceEEeeeCCC------chHHHHHHhcCCCccEEEEeCHH
Q 023179 50 NPKVVVTRER----GKNGK----LIKALAKHRIDCLELPLIQHAQGPD------TDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 50 g~~VLitR~~----~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~------~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
.++||+.-.. ..+.. +.+.+++.|+++..+-+.... ..+ .+.+.+..+.+...|.|||.||.
T Consensus 58 ~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlp-l~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~ 133 (279)
T 2fzv_A 58 PVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLP-LPDQVQSDDHPAVKELRALSEWSEGQVWCSPE 133 (279)
T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCC-CTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEE
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCC-CCccCccCCCHHHHHHHHHHHHCCeEEEEcCc
Confidence 5677777433 22333 445566679988877665542 111 12344444445667888888864
No 376
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=36.84 E-value=33 Score=29.00 Aligned_cols=66 Identities=12% Similarity=-0.021 Sum_probs=41.5
Q ss_pred cccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHH
Q 023179 42 TSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEA 113 (286)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv--FTS~~a 113 (286)
+.+-..|.|++|.++........+...|++.|++...+..+.. .. + ....+. .+..|+++ +..+..
T Consensus 98 i~s~~DL~Gk~i~~~~~~~~~~~~~~~l~~~Gl~~~~v~~~~~---~~-~-~~~al~-~G~vDa~~~~~~~~~~ 165 (302)
T 3ix1_A 98 FDSPADLVGLTVGYPGIPVNEPILKTMVEAAGGDYEQVHLMDV---GF-E-LGASIV-SGRADAVVGTYINHEY 165 (302)
T ss_dssp CSSGGGGTTSEEEECSCTTHHHHHHHHHHHTTCCGGGCEEEEC---TT-C-HHHHHH-HSSSSEEEEEETTTHH
T ss_pred CCChHHcCCCEEEeCCCcchHHHHHHHHHHcCCCHHHeEEEec---Cc-c-HHHHHh-CCCCCEEEEeeecchH
Confidence 4445678999999998766556678888899987433222222 11 2 234442 37889887 555544
No 377
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=36.71 E-value=38 Score=28.04 Aligned_cols=36 Identities=8% Similarity=0.036 Sum_probs=27.6
Q ss_pred cCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEe
Q 023179 44 ASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 44 ~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (286)
...++.|++||||-.... +..+++.|.++|++|..+
T Consensus 13 ~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~ 49 (249)
T 1o5i_A 13 MELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTIC 49 (249)
T ss_dssp ---CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 347888999999987653 678999999999987643
No 378
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=36.71 E-value=39 Score=28.37 Aligned_cols=75 Identities=12% Similarity=0.050 Sum_probs=45.0
Q ss_pred ccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHH
Q 023179 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLE 119 (286)
Q Consensus 43 ~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv--FTS~~av~~~~~ 119 (286)
++...+.|+++|||-.... ...+++.|.++|++|+.+- . .....+.+.+.+ -....++. +++..+++.+++
T Consensus 4 ~m~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~---r-~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~ 77 (271)
T 3tzq_B 4 SMTAELENKVAIITGACGGIGLETSRVLARAGARVVLAD---L-PETDLAGAAASV--GRGAVHHVVDLTNEVSVRALID 77 (271)
T ss_dssp ---CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE---C-TTSCHHHHHHHH--CTTCEEEECCTTCHHHHHHHHH
T ss_pred CCCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEc---C-CHHHHHHHHHHh--CCCeEEEECCCCCHHHHHHHHH
Confidence 3456788999999987653 6789999999999876431 1 111222232223 11222222 468888888887
Q ss_pred HHHH
Q 023179 120 AWKE 123 (286)
Q Consensus 120 ~l~~ 123 (286)
.+.+
T Consensus 78 ~~~~ 81 (271)
T 3tzq_B 78 FTID 81 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 379
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=36.66 E-value=1.9e+02 Score=24.22 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=39.7
Q ss_pred CeEEEeCC-CCchHHHHHHHHhC-CCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE-EeCHHHHHHHHHHHHHc
Q 023179 51 PKVVVTRE-RGKNGKLIKALAKH-RIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII-ITSPEAGSVFLEAWKEA 124 (286)
Q Consensus 51 ~~VLitR~-~~~~~~l~~~L~~~-G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv-FTS~~av~~~~~~l~~~ 124 (286)
++|.|.-. ..-...+.+.+.+. |+++.- .+.. ..+ +++.+ . ...|.+| ||+|.++......+.+.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva--~~d~--~~d---l~~~~-~-~~~DvvIDfT~p~a~~~~~~~a~~~ 68 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSA--ELDA--GDP---LSLLT-D-GNTEVVIDFTHPDVVMGNLEFLIDN 68 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEE--EECT--TCC---THHHH-H-TTCCEEEECSCTTTHHHHHHHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEE--EEcc--CCC---HHHHh-c-cCCcEEEEccChHHHHHHHHHHHHc
Confidence 36777764 33456677777755 665543 2221 123 23333 2 3589999 99999987776665553
No 380
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=36.59 E-value=43 Score=28.36 Aligned_cols=101 Identities=14% Similarity=0.087 Sum_probs=50.3
Q ss_pred CCCCCCCccccccccccccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-Cc
Q 023179 26 RPLPFQFSRIQASSDATSASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IF 103 (286)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~-~~ 103 (286)
+..+.+..|++..- ..+.|+.+|||-.... +..+++.|.+.|++|+.+-.-.. ...+.+.+.+...+ ..
T Consensus 11 ~~~~~~n~~~~~mm------~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~---~~~~~~~~~~~~~~~~~ 81 (280)
T 4da9_A 11 VDLGTENLYFQSMM------TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDA---EGVAPVIAELSGLGARV 81 (280)
T ss_dssp ------------CC------SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCH---HHHHHHHHHHHHTTCCE
T ss_pred ccccccchhhhhhh------hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCH---HHHHHHHHHHHhcCCcE
Confidence 44555555665522 5788999999987653 67899999999998764321000 01122223332221 22
Q ss_pred cEEE--EeCHHHHHHHHHHHHHc-CCCCcEEEEEC
Q 023179 104 DWII--ITSPEAGSVFLEAWKEA-GTPNVRIGVVG 135 (286)
Q Consensus 104 d~Iv--FTS~~av~~~~~~l~~~-~~~~~~i~aVG 135 (286)
.++. ++++.+++.+++.+.+. +.-+.-|.+.|
T Consensus 82 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg 116 (280)
T 4da9_A 82 IFLRADLADLSSHQATVDAVVAEFGRIDCLVNNAG 116 (280)
T ss_dssp EEEECCTTSGGGHHHHHHHHHHHHSCCCEEEEECC
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 2221 46888888888776543 22233444444
No 381
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=36.55 E-value=60 Score=28.50 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=24.9
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCc
Q 023179 46 ASNSNPKVVVTRERGKNGKLIKALAKHRID 75 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~ 75 (286)
..+.|+++||+-..+-+...+..|.+.|+.
T Consensus 150 ~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~ 179 (315)
T 3tnl_A 150 HDIIGKKMTICGAGGAATAICIQAALDGVK 179 (315)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTTCS
T ss_pred CCccCCEEEEECCChHHHHHHHHHHHCCCC
Confidence 457899999998766677888999999984
No 382
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=36.38 E-value=42 Score=26.47 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=37.2
Q ss_pred HHHHHHHhCC--CeeEEEEeeeeecCCCC---------------c---------HHHHHHcCCCCEEEEeCh-------H
Q 023179 192 EIEEGLSNRG--FEVVRLNTYTTEPVHHV---------------D---------QTVLKQALSIPVVAVASP-------S 238 (286)
Q Consensus 192 ~L~~~L~~~G--~~V~~~~vY~~~~~~~~---------------~---------~~~~~~~~~~d~IvftS~-------s 238 (286)
.+.+.|++.| .+|+.+.+|+....... . ....+.+...|.|+|.|| .
T Consensus 24 ~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~aD~iv~~~P~y~~~~p~ 103 (201)
T 1t5b_A 24 YFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIPT 103 (201)
T ss_dssp HHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHHHHHHHCSEEEEECCCBTTBCCH
T ss_pred HHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHHHHHhCCEEEEEeCcccCcCCH
Confidence 4556677665 78888888765321110 0 112333568999999994 6
Q ss_pred HHHHHHHHhc
Q 023179 239 AVRSWVNLIS 248 (286)
Q Consensus 239 av~~~~~~~~ 248 (286)
.++.|++.+.
T Consensus 104 ~lK~~iD~~~ 113 (201)
T 1t5b_A 104 QLKNYFDLIA 113 (201)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhe
Confidence 8999999876
No 383
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=36.18 E-value=27 Score=26.98 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=24.5
Q ss_pred cCCCccEEEEeCHH-H-------HHHHHHHHHHcCCCCcEEEEEC
Q 023179 99 ADTIFDWIIITSPE-A-------GSVFLEAWKEAGTPNVRIGVVG 135 (286)
Q Consensus 99 ~~~~~d~IvFTS~~-a-------v~~~~~~l~~~~~~~~~i~aVG 135 (286)
.+..+|.|||-+|. . ++.|++.+....+.+.+++++|
T Consensus 43 ~l~~~d~ii~g~pty~~g~~p~~~~~f~~~l~~~~l~gk~~~~f~ 87 (169)
T 1czn_A 43 DLNAYDYLIIGCPTWNVGELQSDWEGIYDDLDSVNFQGKKVAYFG 87 (169)
T ss_dssp GGGGCSEEEEECCEETTTEECHHHHHHGGGGGGSCCTTCEEEEEE
T ss_pred HHhhCCEEEEEecccCCCcCCHHHHHHHHHhhhhccCCCEEEEEE
Confidence 35679999998886 2 4556665544455667776655
No 384
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=36.08 E-value=38 Score=28.57 Aligned_cols=77 Identities=9% Similarity=0.052 Sum_probs=45.1
Q ss_pred ccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEE--EEeCHHHHHHHH
Q 023179 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWI--IITSPEAGSVFL 118 (286)
Q Consensus 43 ~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~-~~~d~I--vFTS~~av~~~~ 118 (286)
++...+.|+.||||-.... ...+++.|.++|++|+.+-. .. ...+.+.+.+... .....+ =+++..+++.++
T Consensus 21 ~m~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r---~~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 96 (270)
T 3ftp_A 21 SMDKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTAT---TE-AGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALV 96 (270)
T ss_dssp --CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES---SH-HHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHH
T ss_pred ccccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CH-HHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHH
Confidence 4556788999999987653 67899999999998764311 10 0112222233221 122222 246788888887
Q ss_pred HHHHH
Q 023179 119 EAWKE 123 (286)
Q Consensus 119 ~~l~~ 123 (286)
+.+.+
T Consensus 97 ~~~~~ 101 (270)
T 3ftp_A 97 ESTLK 101 (270)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76644
No 385
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=36.06 E-value=38 Score=28.37 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=44.4
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv----FTS~~av~~~~~~ 120 (286)
-.+.|++||||-.... +..+++.|.++|++|+.+-- ... ...+.+.+.++... .+..+ +++..+++.+++.
T Consensus 25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r--~~~-~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~ 100 (271)
T 4iin_A 25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYR--SNA-EVADALKNELEEKG-YKAAVIKFDAASESDFIEAIQT 100 (271)
T ss_dssp CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEES--SCH-HHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC--CCH-HHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHH
Confidence 4577999999987653 67899999999998764211 000 01122333332221 22222 3778888888776
Q ss_pred HHH
Q 023179 121 WKE 123 (286)
Q Consensus 121 l~~ 123 (286)
+.+
T Consensus 101 ~~~ 103 (271)
T 4iin_A 101 IVQ 103 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 386
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=36.05 E-value=38 Score=27.46 Aligned_cols=84 Identities=12% Similarity=0.052 Sum_probs=44.1
Q ss_pred CCeEEEeCC----CCchHHHHHHHHh---CCCcEE-EeceEEeeeCCC--------chHHHHHHhcCCCccEEEEeCHH-
Q 023179 50 NPKVVVTRE----RGKNGKLIKALAK---HRIDCL-ELPLIQHAQGPD--------TDRLSSVLNADTIFDWIIITSPE- 112 (286)
Q Consensus 50 g~~VLitR~----~~~~~~l~~~L~~---~G~~v~-~~P~~~~~~~~~--------~~~l~~~l~~~~~~d~IvFTS~~- 112 (286)
.++||+.-. ...+..+++.+.+ .|+++. .+.+... |.-+ .+.+.+..+.+...|.|||.||.
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~~g~~v~~~idL~~l-P~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~Y 84 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPEGIAITPLGSIGTF-PHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPEY 84 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCCTTEEEEECCCGGGS-CCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECCB
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHccCCCEEEEEEehhhc-CCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCcc
Confidence 357776633 3345666666654 366666 4333221 1100 12344445456789999999985
Q ss_pred ------HHHHHHHHHHHc---CCCCcEEEEE
Q 023179 113 ------AGSVFLEAWKEA---GTPNVRIGVV 134 (286)
Q Consensus 113 ------av~~~~~~l~~~---~~~~~~i~aV 134 (286)
..+.|++.+... .+.+.+++.+
T Consensus 85 ~~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v 115 (199)
T 4hs4_A 85 NYSVPGVLKNAIDWLSRVSPQPLAGKPVALV 115 (199)
T ss_dssp TTBCCHHHHHHHHHHTTSSSCTTTTCEEEEE
T ss_pred CCCcCHHHHHHHHHhcccCCcccCCCEEEEE
Confidence 456666655431 2345554443
No 387
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=36.00 E-value=66 Score=28.70 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=44.3
Q ss_pred CCeEEEeC--CCCchHH----HHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-------HHHH
Q 023179 50 NPKVVVTR--ERGKNGK----LIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSV 116 (286)
Q Consensus 50 g~~VLitR--~~~~~~~----l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~-------av~~ 116 (286)
.++|+|.. +.+.... +++.|.+.|+++..+.+-+. +...+ ...+..+|.|||-||. .++.
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~----~~~~~---~~~l~~~D~iiigsP~y~~~~~~~~k~ 328 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSS----DITKV---ALHTYDSGAVAFASPTLNNTMMPSVAA 328 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGC----CHHHH---HHHHHTCSEEEEECCCBTTBCCHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcC----CHHHH---HHHHHhCCEEEEEcCccCcCchHHHHH
Confidence 35666553 3333344 44455557776654433211 11222 2234679999999873 6777
Q ss_pred HHHHHHHcCC-CCcEEEEEC
Q 023179 117 FLEAWKEAGT-PNVRIGVVG 135 (286)
Q Consensus 117 ~~~~l~~~~~-~~~~i~aVG 135 (286)
|++.+...+. .+.+++++|
T Consensus 329 fld~l~~~~~~~~K~~~~~~ 348 (414)
T 2q9u_A 329 ALNYVRGLTLIKGKPAFAFG 348 (414)
T ss_dssp HHHHHHHHTTTTTSBEEEEE
T ss_pred HHHHHHhhcccCCCEEEEEE
Confidence 8887765455 556666554
No 388
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=35.89 E-value=1.2e+02 Score=21.69 Aligned_cols=113 Identities=10% Similarity=0.126 Sum_probs=62.4
Q ss_pred CCCCeEEEeCCCC-chHHHHHHHHhCCC--cEEEeceEEeeeCCCchHHHHHHhcC---------CCccEEEEe----CH
Q 023179 48 NSNPKVVVTRERG-KNGKLIKALAKHRI--DCLELPLIQHAQGPDTDRLSSVLNAD---------TIFDWIIIT----SP 111 (286)
Q Consensus 48 l~g~~VLitR~~~-~~~~l~~~L~~~G~--~v~~~P~~~~~~~~~~~~l~~~l~~~---------~~~d~IvFT----S~ 111 (286)
..+++|||.-... ....+...|+..|. .+.. ..+.++....+... ..+|.|++- ..
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~--------~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~ 75 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYR--------CITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGT 75 (149)
T ss_dssp CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEE--------ECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSS
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEE--------ECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCC
Confidence 4567899987665 35678888888887 3321 11233444455331 568888864 22
Q ss_pred HHHHHHHHHHHHcC-CCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 112 EAGSVFLEAWKEAG-TPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 112 ~av~~~~~~l~~~~-~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
++.+ +++.+.+.. ...++++++ +........+.++. |.. ++.++..+.+.|...+..
T Consensus 76 ~g~~-~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~---g~~-~~l~kP~~~~~l~~~i~~ 134 (149)
T 1k66_A 76 DGRE-VLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSY---SIS-SYIVKPLEIDRLTETVQT 134 (149)
T ss_dssp CHHH-HHHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHT---TCS-EEEECCSSHHHHHHHHHH
T ss_pred CHHH-HHHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHC---CCC-EEEeCCCCHHHHHHHHHH
Confidence 4544 455555432 145555554 44443333333222 554 455666778888766643
No 389
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=35.80 E-value=1.8e+02 Score=28.46 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=56.1
Q ss_pred CCCCCCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHh--cCCCccEEEEeCHH------
Q 023179 46 ASNSNPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLN--ADTIFDWIIITSPE------ 112 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~--~~~~~d~IvFTS~~------ 112 (286)
..+.|++|.|.-..+ +...+.+.|++.|+.|..+-.-.- ...| ..+. ....||+||+....
T Consensus 533 ~~l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g-~GvD-----~t~~~~~s~~fDAVvlPGG~~~~~~~ 606 (688)
T 3ej6_A 533 PTIATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLA-SGVD-----QTYSAADATAFDAVVVAEGAERVFSG 606 (688)
T ss_dssp SCCTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC-TTCC-----EETTTCCGGGCSEEEECTTCCTTTST
T ss_pred CCccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCC-CCcc-----cCcccCChhcCcEEEECCCccccccc
Confidence 357799998886654 224667899999999987643211 1111 1111 12469999997652
Q ss_pred -----------HHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHh
Q 023179 113 -----------AGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (286)
Q Consensus 113 -----------av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~ 145 (286)
.+..|++...+ .++.|++||++. .+|.+.
T Consensus 607 ~~~~d~Lr~~~~a~~fV~e~~~---hgKpIAAIchgp-~lL~~A 646 (688)
T 3ej6_A 607 KGAMSPLFPAGRPSQILTDGYR---WGKPVAAVGSAK-KALQSI 646 (688)
T ss_dssp TTTCCTTSCTTHHHHHHHHHHH---TTCCEEEEGGGH-HHHHHT
T ss_pred ccchhhhccCHHHHHHHHHHHH---cCCEEEEeCccH-HHHHHc
Confidence 12234433333 367899999875 677787
No 390
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=35.75 E-value=2.4e+02 Score=25.14 Aligned_cols=34 Identities=18% Similarity=0.058 Sum_probs=28.3
Q ss_pred CCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEec
Q 023179 47 SNSNPKVVVTRERGKNGKLIKALAKHRIDCLELP 80 (286)
Q Consensus 47 ~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P 80 (286)
...+++|+|.-...-+..+++.+++.|++++.+.
T Consensus 21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d 54 (403)
T 3k5i_A 21 MWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD 54 (403)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 3457899999887777899999999999987764
No 391
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=35.72 E-value=98 Score=26.48 Aligned_cols=109 Identities=16% Similarity=0.210 Sum_probs=58.6
Q ss_pred CHHHHHHhcccCCCCCCEEEEEcCCCChhH-----HHHH--------HHhC-CCeeEEEEeeeeecCCCCcHHHHHH--c
Q 023179 163 TGKILASELPKNGKKKCTVLYPASAKASNE-----IEEG--------LSNR-GFEVVRLNTYTTEPVHHVDQTVLKQ--A 226 (286)
Q Consensus 163 ~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~-----L~~~--------L~~~-G~~V~~~~vY~~~~~~~~~~~~~~~--~ 226 (286)
..+.+...+.....+..+|++.+-.....+ +... |+.+ |++|..+-. .+ +.+++.+. .
T Consensus 105 ~~~~~~~~l~~~~~~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~--~v----p~e~iv~aa~e 178 (262)
T 1xrs_B 105 SMEETDEYIKENIGRKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS--QV----ANEDFIKKAVE 178 (262)
T ss_dssp CHHHHHHHHHHHTCSCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS--SB----CHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC--CC----CHHHHHHHHHH
Confidence 345555555444334457776654333222 2233 7778 876643332 22 22333332 2
Q ss_pred CCCCEEEEeChHH--------HHHHHHHhccccCC-CceEEEeCHH-HHHHHHHcCCCeEE
Q 023179 227 LSIPVVAVASPSA--------VRSWVNLISDTEQW-SNSVACIGET-TASAAKRLGLKNVY 277 (286)
Q Consensus 227 ~~~d~IvftS~sa--------v~~~~~~~~~~~~~-~~~iv~IG~~-Ta~~l~~~G~~~v~ 277 (286)
.++|+|.+++..+ ++.+.+.+++.+.. ++++++=|.. +.+.+++.|...++
T Consensus 179 ~~~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~~a~~iGad~~~ 239 (262)
T 1xrs_B 179 LEADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNEIAKELGYDAGF 239 (262)
T ss_dssp TTCSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHHHHHTTTCSEEE
T ss_pred cCCCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHcCCeEEE
Confidence 5899999877332 34455555543322 3778877764 45566778876544
No 392
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=35.66 E-value=40 Score=29.90 Aligned_cols=65 Identities=15% Similarity=0.090 Sum_probs=38.4
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH-------HHHHHHHHHHHcCCCCcEEEEEC
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE-------AGSVFLEAWKEAGTPNVRIGVVG 135 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~-------av~~~~~~l~~~~~~~~~i~aVG 135 (286)
.+++.|.+.|+++..+.+ .. .+...+.+ .+..+|.|+|-||. .+..|++.+....+.+.+++++|
T Consensus 271 ~ia~~l~~~g~~v~~~~~---~~-~~~~~~~~---~~~~~d~ii~g~p~y~~~~~~~~~~~l~~l~~~~~~~k~~~~~~ 342 (398)
T 1ycg_A 271 ALMDGLVAGGCEVKLFKL---SV-SDRNDVIK---EILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFG 342 (398)
T ss_dssp HHHHHHHHTTCEEEEEEG---GG-SCHHHHHH---HHHHCSEEEEECCCBTTBCCGGGHHHHHHHHHHCCSSCEEEEEE
T ss_pred HHHHHHHhcCCeEEEEEC---CC-CCHHHHHH---HHHHCCEEEEECCccCccchHHHHHHHHHHhccccCCCEEEEEE
Confidence 344455566766543332 21 12223322 34568999999862 57788887765555677777776
No 393
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=35.27 E-value=43 Score=28.21 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=29.2
Q ss_pred ccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEe
Q 023179 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 43 ~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (286)
++...+.|+.+|||-.... ...+++.|.++|++|+.+
T Consensus 4 ~m~~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~ 41 (286)
T 3uve_A 4 SMTGRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAV 41 (286)
T ss_dssp --CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 3456788999999987653 678999999999998754
No 394
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=35.16 E-value=1.3e+02 Score=25.25 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=38.2
Q ss_pred HHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEe--------ChHHHHHHHHHhccccCCCceEEEeCHH
Q 023179 192 EIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA--------SPSAVRSWVNLISDTEQWSNSVACIGET 263 (286)
Q Consensus 192 ~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~Ivft--------S~sav~~~~~~~~~~~~~~~~iv~IG~~ 263 (286)
.|.+.|++.|++|+.... +. ......++ .+.++|+|||. +....+.|.+.+.. +.-+++++..
T Consensus 36 ~i~~~L~~~gf~V~~~t~-dd-~~~~~~~~---~L~~~DvvV~~~~~~~~~l~~~~~~al~~~V~~----GgG~vgiH~a 106 (252)
T 1t0b_A 36 VIASYLAEAGFDAATAVL-DE-PEHGLTDE---VLDRCDVLVWWGHIAHDEVKDEVVERVHRRVLE----GMGLIVLHSG 106 (252)
T ss_dssp HHHHHHHHTTCEEEEEES-SS-GGGGCCHH---HHHTCSEEEEECSSCGGGSCHHHHHHHHHHHHT----TCEEEEEGGG
T ss_pred HHHHHHhhCCcEEEEEec-cC-ccccCCHh---HHhcCCEEEEecCCCCCcCCHHHHHHHHHHHHc----CCCEEEEccc
Confidence 458889999988865332 01 11111122 24699999995 46777777777764 4566666543
No 395
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=35.12 E-value=30 Score=26.70 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=24.1
Q ss_pred cCCCccEEEEeCHH-H-------HHHHHHHHHHcCCCCcEEEEECh
Q 023179 99 ADTIFDWIIITSPE-A-------GSVFLEAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 99 ~~~~~d~IvFTS~~-a-------v~~~~~~l~~~~~~~~~i~aVG~ 136 (286)
.+..+|.|||-+|. . +..|++.+....+.+.+++++|-
T Consensus 43 ~l~~~d~ii~g~p~y~~g~~p~~~~~fl~~l~~~~l~~k~~~~f~t 88 (169)
T 1obo_A 43 DLNDYQYLIIGCPTLNIGELQSDWEGLYSELDDVDFNGKLVAYFGT 88 (169)
T ss_dssp GGGGCSEEEEEEEEETTTEECHHHHHHHTTGGGCCCTTCEEEEEEE
T ss_pred HHhhCCEEEEEEeeCCCCcCCHHHHHHHHHhhhcCcCCCEEEEEEE
Confidence 45679999998877 2 44566655444455666665543
No 396
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=35.12 E-value=61 Score=26.48 Aligned_cols=72 Identities=18% Similarity=0.137 Sum_probs=46.9
Q ss_pred CCCCCeEEEeCCCC-------chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERG-------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLE 119 (286)
Q Consensus 47 ~l~g~~VLitR~~~-------~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~ 119 (286)
.+.|++|++.-... .-....+.|++.|+++..+.+.+ .+.++..+.+ .+.|.|+|+-.+... +++
T Consensus 24 ~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~----~~~~~~~~~l---~~ad~I~l~GG~~~~-l~~ 95 (206)
T 3l4e_A 24 NLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT----ESLGEITTKL---RKNDFIYVTGGNTFF-LLQ 95 (206)
T ss_dssp CCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT----SCHHHHHHHH---HHSSEEEECCSCHHH-HHH
T ss_pred HcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC----CChHHHHHHH---HhCCEEEECCCCHHH-HHH
Confidence 45578887764222 23578889999999887765543 2223333444 457999998876664 677
Q ss_pred HHHHcCC
Q 023179 120 AWKEAGT 126 (286)
Q Consensus 120 ~l~~~~~ 126 (286)
.|.+.++
T Consensus 96 ~L~~~gl 102 (206)
T 3l4e_A 96 ELKRTGA 102 (206)
T ss_dssp HHHHHTH
T ss_pred HHHHCCh
Confidence 7777553
No 397
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=35.10 E-value=39 Score=28.47 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=25.5
Q ss_pred CCCeEEEeCC----------------CC-chHHHHHHHHhCCCcEEEe
Q 023179 49 SNPKVVVTRE----------------RG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 49 ~g~~VLitR~----------------~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
.|++||||-+ .+ .+..+++.+..+|++|..+
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv 49 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLI 49 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3889999987 44 6789999999999999854
No 398
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=35.07 E-value=35 Score=29.77 Aligned_cols=75 Identities=8% Similarity=-0.016 Sum_probs=46.2
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH---H----HHHHHHHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE---A----GSVFLEAW 121 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~---a----v~~~~~~l 121 (286)
.|.+|+++.+.-....+...++..|+++..+|+-.. ...|.+.+++.++...+...|++++++ + ++.+.+.+
T Consensus 82 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~-~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~ 160 (392)
T 2z9v_A 82 PDDVVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYN-EAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALV 160 (392)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSCEEEEECCTT-SCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHHHH
T ss_pred CCCEEEEecCCcccHHHHHHHHHcCCceEEeeCCCC-CCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHHHH
Confidence 477899988753222345555667999998886321 113556777777433456789988876 2 34455555
Q ss_pred HHc
Q 023179 122 KEA 124 (286)
Q Consensus 122 ~~~ 124 (286)
+++
T Consensus 161 ~~~ 163 (392)
T 2z9v_A 161 SAH 163 (392)
T ss_dssp HHT
T ss_pred HHc
Confidence 544
No 399
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=35.06 E-value=68 Score=26.02 Aligned_cols=69 Identities=17% Similarity=0.241 Sum_probs=44.9
Q ss_pred EEEEEcCCCC--h--------hHHHHHHHhC--CCeeEEEEeeeeecCCCCc--------------------------HH
Q 023179 180 TVLYPASAKA--S--------NEIEEGLSNR--GFEVVRLNTYTTEPVHHVD--------------------------QT 221 (286)
Q Consensus 180 rvL~~~g~~~--~--------~~L~~~L~~~--G~~V~~~~vY~~~~~~~~~--------------------------~~ 221 (286)
|||++-|... . +.+.+.|++. |.+|+.+.+|+........ .+
T Consensus 6 kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (211)
T 3p0r_A 6 KVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVADK 85 (211)
T ss_dssp EEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHHHH
Confidence 6777655433 1 3456777766 8999999998764311110 11
Q ss_pred HHHHcCCCCEEEEeC-------hHHHHHHHHHhc
Q 023179 222 VLKQALSIPVVAVAS-------PSAVRSWVNLIS 248 (286)
Q Consensus 222 ~~~~~~~~d~IvftS-------~sav~~~~~~~~ 248 (286)
+.+.+...|.|||.+ |..+++|++.+-
T Consensus 86 ~~~~~~~aD~iv~~~P~y~~~~p~~lK~~iD~~~ 119 (211)
T 3p0r_A 86 YLNQFLEADKVVFGFPLWNLTIPAVLHTYIDYLN 119 (211)
T ss_dssp HHHHHHHCSEEEEEEECBTTBCCHHHHHHHHHHC
T ss_pred HHHHHHhCCEEEEEcChhcccCCHHHHHHHHHHh
Confidence 222346799999998 689999999874
No 400
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=34.99 E-value=61 Score=28.11 Aligned_cols=160 Identities=16% Similarity=0.094 Sum_probs=84.9
Q ss_pred eEEEeCCCCchHHH----HHHHHhCCCcEEEeceEEeeeCCCchHHHHH---HhcCCCccEEEEeCHHH----HHHHHHH
Q 023179 52 KVVVTRERGKNGKL----IKALAKHRIDCLELPLIQHAQGPDTDRLSSV---LNADTIFDWIIITSPEA----GSVFLEA 120 (286)
Q Consensus 52 ~VLitR~~~~~~~l----~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~---l~~~~~~d~IvFTS~~a----v~~~~~~ 120 (286)
-|++.-..+....+ .+.+++.|++...+-+-+. ...+++.+. |+.....|.|+.--|-- -+..++.
T Consensus 36 avilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~~---~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~ 112 (281)
T 2c2x_A 36 GTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPAD---ISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALER 112 (281)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTT---CCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHH
T ss_pred EEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCCC---CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhh
Confidence 34444444433333 3456678988865433211 122344444 45567889999987632 1122222
Q ss_pred HHH-cCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCC--CCCCEEEEEcCC-CChhHHHHH
Q 023179 121 WKE-AGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNG--KKKCTVLYPASA-KASNEIEEG 196 (286)
Q Consensus 121 l~~-~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~--~~~~rvL~~~g~-~~~~~L~~~ 196 (286)
+.. ...|+..-+-+| .|- . |.. .+.| .|+++.++.|.... ..|++++++... .....+...
T Consensus 113 I~p~KDVDG~~p~n~g-----~l~-~------g~~-~~~P--cTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~l 177 (281)
T 2c2x_A 113 VDPAKDADGLHPTNLG-----RLV-L------GTP-APLP--CTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLL 177 (281)
T ss_dssp SCGGGBTTSCCHHHHH-----HHH-H------TCC-CCCC--HHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred cCccCCccCCChhhHH-----HHh-C------CCC-CCCC--ChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHH
Confidence 211 112333222122 121 1 321 2343 46777777776553 378999998654 446668888
Q ss_pred HHhC--CCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeCh
Q 023179 197 LSNR--GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 197 L~~~--G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~ 237 (286)
|... |++|+.+.-++ . .+.+.....|+|+-+.+
T Consensus 178 L~~~g~~atVtv~h~~t-----~---~L~~~~~~ADIVI~Avg 212 (281)
T 2c2x_A 178 LTRRSENATVTLCHTGT-----R---DLPALTRQADIVVAAVG 212 (281)
T ss_dssp HTSTTTCCEEEEECTTC-----S---CHHHHHTTCSEEEECSC
T ss_pred HhcCCCCCEEEEEECch-----h---HHHHHHhhCCEEEECCC
Confidence 8888 88886653221 1 12333578999888776
No 401
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=34.80 E-value=84 Score=26.21 Aligned_cols=26 Identities=23% Similarity=0.097 Sum_probs=12.1
Q ss_pred CCccEEEEeCHHHHHHHHHHHHHcCC
Q 023179 101 TIFDWIIITSPEAGSVFLEAWKEAGT 126 (286)
Q Consensus 101 ~~~d~IvFTS~~av~~~~~~l~~~~~ 126 (286)
..+|+|+.++-..+..+++.+.+.|+
T Consensus 186 ~~~~ai~~~nd~~A~g~~~al~~~G~ 211 (294)
T 3qk7_A 186 VPPTAIITDCNMLGDGVASALDKAGL 211 (294)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCC
Confidence 34455555544444444444444443
No 402
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=34.77 E-value=1e+02 Score=20.73 Aligned_cols=108 Identities=11% Similarity=0.063 Sum_probs=61.1
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHHc
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~l~~~ 124 (286)
+++||+.-... ....+.+.|+..|+++.... +.+.....+.. ..+|.|++-- .++.+ +++.+.+.
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~--------~~~~~~~~l~~-~~~dlii~d~~~~~~~~~~-~~~~l~~~ 70 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLV--------DGSTALDQLDL-LQPIVILMAWPPPDQSCLL-LLQHLREH 70 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEES--------CHHHHHHHHHH-HCCSEEEEECSTTCCTHHH-HHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEec--------CHHHHHHHHHh-cCCCEEEEecCCCCCCHHH-HHHHHHhc
Confidence 46788887654 35677888888887654321 22333344422 4688888753 23444 56666654
Q ss_pred C-CCCcEEEEEChhhH-HHHHHhhhccCCCCceeccCCCCCHHHHHHhcccC
Q 023179 125 G-TPNVRIGVVGAGTA-SIFEEVIQSSKCSLDVAFSPSKATGKILASELPKN 174 (286)
Q Consensus 125 ~-~~~~~i~aVG~~Ta-~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~ 174 (286)
. ...++++++..... ..+.+. |.. ++..+..+.+.|...+...
T Consensus 71 ~~~~~~~ii~~~~~~~~~~~~~~------g~~-~~l~kp~~~~~l~~~l~~~ 115 (119)
T 2j48_A 71 QADPHPPLVLFLGEPPVDPLLTA------QAS-AILSKPLDPQLLLTTLQGL 115 (119)
T ss_dssp CCCSSCCCEEEESSCCSSHHHHH------HCS-EECSSCSTTHHHHHHHHTT
T ss_pred cccCCCCEEEEeCCCCchhhhhc------CHH-HhccCCCCHHHHHHHHHHH
Confidence 3 24566665543322 133334 554 4556666777887776543
No 403
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=34.69 E-value=26 Score=30.60 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=41.2
Q ss_pred cccCCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH
Q 023179 42 TSASASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (286)
Q Consensus 42 ~~~~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~ 111 (286)
+.+...|.|++|.+++.......+...|++.|++...+- ..+.+ ...+...| ..+..|+++...+
T Consensus 111 i~s~~DLkGk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~---~v~~~-~~~~~~al-~~G~vDa~~~~~~ 175 (348)
T 3uif_A 111 AKSIKDLKGKKIALHRGRPWELAFSNLLQSEGLTFKDFK---IVNVN-PQVGAAAL-ASGTVDGFFSLFD 175 (348)
T ss_dssp CCSGGGGTTSEEEECTTSTHHHHHHHHHHHTTCCGGGSE---EECCC-HHHHHHHH-HHTSSSEEEESTT
T ss_pred CCCHHHcCCCEEEecCCChHHHHHHHHHHHcCCCHHHeE---EEECC-HHHHHHHH-HcCCCCEEEechH
Confidence 334467889999998666556677888999998743222 22222 23444556 3478899876554
No 404
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=34.68 E-value=44 Score=27.74 Aligned_cols=72 Identities=10% Similarity=-0.001 Sum_probs=44.7
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEE--EeCHHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWII--ITSPEAGSVFLEAW 121 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~-~~~d~Iv--FTS~~av~~~~~~l 121 (286)
..+.|++||||-... -...+++.|.++|++|..+- . +.+.+.+....+ ....++. ++++..++.+++..
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~---r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 76 (259)
T 4e6p_A 4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIAD---I----DIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAAT 76 (259)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE---S----CHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe---C----CHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHH
Confidence 567899999998765 36789999999999876431 1 123333333222 1222221 36788888877766
Q ss_pred HHc
Q 023179 122 KEA 124 (286)
Q Consensus 122 ~~~ 124 (286)
.+.
T Consensus 77 ~~~ 79 (259)
T 4e6p_A 77 VEH 79 (259)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 405
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=34.66 E-value=1.4e+02 Score=22.22 Aligned_cols=102 Identities=16% Similarity=0.217 Sum_probs=60.8
Q ss_pred ccEEEEeCHHHHHHH-HHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceecc---CCCCCHHHHHHhcccCCC-C
Q 023179 103 FDWIIITSPEAGSVF-LEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFS---PSKATGKILASELPKNGK-K 177 (286)
Q Consensus 103 ~d~IvFTS~~av~~~-~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~---~~~~~~e~L~~~L~~~~~-~ 177 (286)
.-.+|.=.-...+.+ ...+...|...+..+.-|...-+.+++. .+...+. =++.++-.+++.|.+... +
T Consensus 13 ~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~------~~DlillD~~MP~mdG~el~~~ir~~~~~~ 86 (134)
T 3to5_A 13 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG------DFDFVVTDWNMPGMQGIDLLKNIRADEELK 86 (134)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH------CCSEEEEESCCSSSCHHHHHHHHHHSTTTT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhC------CCCEEEEcCCCCCCCHHHHHHHHHhCCCCC
Confidence 345555444444433 3444555554444444555555666665 5555432 124678788888876432 4
Q ss_pred CCEEEEEcCCCChhHHHHHHHhCCCeeEEEEeeeeecCC
Q 023179 178 KCTVLYPASAKASNEIEEGLSNRGFEVVRLNTYTTEPVH 216 (286)
Q Consensus 178 ~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~ 216 (286)
.-+|+++.+....+...+.++ .|+ .-|-++|..
T Consensus 87 ~ipvI~lTa~~~~~~~~~~~~-~Ga-----~~yl~KP~~ 119 (134)
T 3to5_A 87 HLPVLMITAEAKREQIIEAAQ-AGV-----NGYIVKPFT 119 (134)
T ss_dssp TCCEEEEESSCCHHHHHHHHH-TTC-----CEEEESSCC
T ss_pred CCeEEEEECCCCHHHHHHHHH-CCC-----CEEEECCCC
Confidence 458999999888877777774 674 457777654
No 406
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=34.63 E-value=48 Score=27.37 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC----chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChh
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPD----TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAG 137 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~----~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~ 137 (286)
-+.+.|+++|+.+... .. ...+ .+.+.+.|+....+|+|+.++-..+...++.+.+.|.+++.++..+..
T Consensus 144 Gf~~al~~~g~~~~~~--~~--~~~~~~~~~~~~~~ll~~~~~~~ai~~~nD~~A~g~~~al~~~g~~dv~vvGfD~~ 217 (271)
T 2dri_A 144 GFQQAVAAHKFNVLAS--QP--ADFDRIKGLNVMQNLLTAHPDVQAVFAQNDEMALGALRALQTAGKSDVMVVGFDGT 217 (271)
T ss_dssp HHHHHHHHHTCEEEEE--EE--CTTCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHHHTCCSCEEEEEECC
T ss_pred HHHHHHhcCCCEEEEe--cC--CCCCHHHHHHHHHHHHHhCCCccEEEECCCcHHHHHHHHHHHcCCCCcEEEEecCC
Confidence 4667778888765421 11 1111 123445554445689999988887777888888888766667666543
No 407
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=34.56 E-value=1.3e+02 Score=23.80 Aligned_cols=110 Identities=13% Similarity=0.118 Sum_probs=61.1
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHH
Q 023179 49 SNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKE 123 (286)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~l~~ 123 (286)
..++|||.-... ....+...|+..|+++.. . .+..+....+.. ..+|.|+.-- .++.+ +++.+.+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~-----~---~~~~~a~~~~~~-~~~dlvllD~~l~~~~g~~-~~~~l~~ 75 (233)
T 1ys7_A 6 TSPRVLVVDDDSDVLASLERGLRLSGFEVAT-----A---VDGAEALRSATE-NRPDAIVLDINMPVLDGVS-VVTALRA 75 (233)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEE-----E---SSHHHHHHHHHH-SCCSEEEEESSCSSSCHHH-HHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEE-----E---CCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHH-HHHHHHh
Confidence 457899988765 356778888888876531 1 122333344422 4688887642 34555 4555665
Q ss_pred cCCCCcEEEEEC-hhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 124 AGTPNVRIGVVG-AGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 124 ~~~~~~~i~aVG-~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
.. ..++++++. ........+.++. |.. ++..+..+.+.|...+..
T Consensus 76 ~~-~~~~ii~lt~~~~~~~~~~~~~~---ga~-~~l~Kp~~~~~L~~~i~~ 121 (233)
T 1ys7_A 76 MD-NDVPVCVLSARSSVDDRVAGLEA---GAD-DYLVKPFVLAELVARVKA 121 (233)
T ss_dssp TT-CCCCEEEEECCCTTTCCCTTTTT---TCS-EEEESSCCHHHHHHHHHH
T ss_pred cC-CCCCEEEEEcCCCHHHHHHHHHc---CCC-EEEeCCCCHHHHHHHHHH
Confidence 43 456665554 3333222222211 544 455666788888776643
No 408
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=34.53 E-value=24 Score=30.19 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=20.2
Q ss_pred CeEEEeCCCC----chHHH----HHHHHhCCCcEEEeceEEe
Q 023179 51 PKVVVTRERG----KNGKL----IKALAKHRIDCLELPLIQH 84 (286)
Q Consensus 51 ~~VLitR~~~----~~~~l----~~~L~~~G~~v~~~P~~~~ 84 (286)
|+||+.-... .+..+ .+.|++.|.+|..+-++..
T Consensus 3 mkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~ 44 (273)
T 1d4a_A 3 RRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAM 44 (273)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred CEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEcccc
Confidence 5677663332 23344 4446677888887776654
No 409
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Probab=34.48 E-value=32 Score=29.24 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=38.1
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~ 111 (286)
+|+||||-..+ -+..+++.|.+.|.++..+.--......|.+.+.+.++. ..+|.||.+..
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~-~~~d~vih~a~ 64 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFAS-ERIDQVYLAAA 64 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHH-HCCSEEEECCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHh-cCCCEEEEcCe
Confidence 68999998765 367888999999987665321100111233455555532 16899998653
No 410
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=34.45 E-value=50 Score=27.90 Aligned_cols=53 Identities=9% Similarity=0.042 Sum_probs=37.0
Q ss_pred CCEEEEEcC--CCChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeCh
Q 023179 178 KCTVLYPAS--AKASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASP 237 (286)
Q Consensus 178 ~~rvL~~~g--~~~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~ 237 (286)
+++|+++.. ...-..+.+.|++.|+++..+.+|.....+.. +..+|.|+++-+
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~-------~~~~d~lIl~GG 57 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAE-------IRDCSGLAMMGG 57 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSC-------GGGSSEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCc-------cccCCEEEECCC
Confidence 467888853 34566789999999999888887765433321 346888888743
No 411
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=34.05 E-value=1.7e+02 Score=23.01 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=38.1
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEece-----------EEeeeC--CCchHHHHHHhcCCCccEEEEeCH
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPL-----------IQHAQG--PDTDRLSSVLNADTIFDWIIITSP 111 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~-----------~~~~~~--~~~~~l~~~l~~~~~~d~IvFTS~ 111 (286)
.++||||-..+ -+..+.+.|.+.|.+|.-+-- ++.... .|.+.+.+.+ ..+|.||....
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~---~~~d~vi~~a~ 76 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVC---KGADAVISAFN 76 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHH---TTCSEEEECCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHh---cCCCEEEEeCc
Confidence 47999998765 367889999999988765422 122111 1334455555 46899888753
No 412
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=34.04 E-value=1.2e+02 Score=21.28 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=62.6
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC------CCccEEEEe----CHHHHHHHH
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD------TIFDWIIIT----SPEAGSVFL 118 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~------~~~d~IvFT----S~~av~~~~ 118 (286)
+++|||.-... ....+.+.|+..|.... +....+.++..+.+... ..+|.|++- ..++.+ ++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~------v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~-~~ 74 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHE------VVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGRE-VL 74 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCE------EEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHH-HH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCce------EEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHH-HH
Confidence 67899887765 35678888888887321 11112334444555331 568888864 234554 55
Q ss_pred HHHHHcC-CCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 119 EAWKEAG-TPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 119 ~~l~~~~-~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
+.+.+.. ...++++++ +........+.++. |.. ++..+..+.+.|...+..
T Consensus 75 ~~l~~~~~~~~~pii~ls~~~~~~~~~~~~~~---g~~-~~l~kP~~~~~l~~~i~~ 127 (140)
T 1k68_A 75 AEIKSDPTLKRIPVVVLSTSINEDDIFHSYDL---HVN-CYITKSANLSQLFQIVKG 127 (140)
T ss_dssp HHHHHSTTGGGSCEEEEESCCCHHHHHHHHHT---TCS-EEEECCSSHHHHHHHHHH
T ss_pred HHHHcCcccccccEEEEecCCcHHHHHHHHHh---chh-heecCCCCHHHHHHHHHH
Confidence 6666543 145566554 44433333333222 554 455666788888766643
No 413
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=33.93 E-value=1.3e+02 Score=25.98 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=41.2
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEee--eCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHA--QGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~--~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
.|.+|++..+.- ..+...++..|+++..+|+-... ...|.+.+++.+.. .....|++++++.
T Consensus 110 ~gd~vl~~~p~y--~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~-~~~~~v~l~~p~n 173 (390)
T 1d2f_A 110 TGEGVVIHTPAY--DAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK-PECKIMLLCSPQN 173 (390)
T ss_dssp TTCEEEEEESCC--HHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS-TTEEEEEEESSCT
T ss_pred CCCEEEEcCCCc--HHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc-CCCeEEEEeCCCC
Confidence 367899988753 44556677889999998874321 11355677777732 3567888887753
No 414
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0
Probab=33.90 E-value=45 Score=27.97 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=28.6
Q ss_pred ccCCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEe
Q 023179 43 SASASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 43 ~~~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (286)
++...+.|+.+|||-.... ...+++.|.++|++|+.+
T Consensus 4 ~m~~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~ 41 (277)
T 3tsc_A 4 SMAGKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAV 41 (277)
T ss_dssp ---CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred ccccccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEE
Confidence 3446788999999987653 678999999999998754
No 415
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}
Probab=33.82 E-value=40 Score=29.71 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=27.2
Q ss_pred ccEEEEeC---------HHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHH-h
Q 023179 103 FDWIIITS---------PEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEE-V 145 (286)
Q Consensus 103 ~d~IvFTS---------~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~-~ 145 (286)
..+||||| .+-++...+.+.+ ..+..+++||.+....+++ .
T Consensus 105 ~~~IvitSDrGLCG~fNsni~k~~~~~i~~--~~g~~l~~VG~Kg~~~~~~~~ 155 (311)
T 2xok_G 105 ELIVAITSDKGLCGSIHSQLAKAVRRHLND--QPNADIVTIGDKIKMQLLRTH 155 (311)
T ss_dssp EEEEEECCSCCSSTTHHHHHHHHHHHSSSS--CTTCEEEEESHHHHHHHHTTS
T ss_pred eEEEEEeCCCcccchhhHHHHHHHHHHHHh--cCCCEEEEechHHHHHHHHhc
Confidence 45999999 5555544332221 1223399999999999997 5
No 416
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=33.64 E-value=36 Score=27.19 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=0.0
Q ss_pred CeEEEe----C-CCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCH
Q 023179 51 PKVVVT----R-ERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSP 111 (286)
Q Consensus 51 ~~VLit----R-~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~ 111 (286)
|+||+. + .......+.....+...++...-++. ..++.+..+.+...|.|||.+|
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~~~~~~v~v~dL~~------~~D~~~~~~~l~~aD~iV~~~P 60 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAIENFSNVTWHPLVA------DFNVEQEQSLLLQNDRIILEFP 60 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHHTTCTTEEEEECCT------TCCHHHHHHHHHTCSEEEEEEE
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHHhcCCCEEEEECCC------cccHHHHHHHHHhCCEEEEECC
No 417
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=33.51 E-value=66 Score=27.02 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=41.0
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHH-----HhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEE
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSV-----LNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIG 132 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~-----l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~ 132 (286)
.-+.+.|+++|..+....++......+ .+.+.+. |+....+|+|+.++-..+..+++.+.+.|+ +++.++
T Consensus 151 ~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vi 230 (303)
T 3kke_A 151 EGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVVASVNAAVGALSTALRLGLRVPEDLSIV 230 (303)
T ss_dssp HHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 345566777776654322222211111 1234444 533456778877777766667777777765 356666
Q ss_pred EEChh
Q 023179 133 VVGAG 137 (286)
Q Consensus 133 aVG~~ 137 (286)
..+..
T Consensus 231 g~D~~ 235 (303)
T 3kke_A 231 GINTT 235 (303)
T ss_dssp EESCC
T ss_pred EEcCh
Confidence 66654
No 418
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=33.47 E-value=1.3e+02 Score=26.12 Aligned_cols=161 Identities=10% Similarity=-0.077 Sum_probs=0.0
Q ss_pred CccEEEEe-CHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhcccCCC--CC
Q 023179 102 IFDWIIIT-SPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPKNGK--KK 178 (286)
Q Consensus 102 ~~d~IvFT-S~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~--~~ 178 (286)
..+.||-. ++.........+.+. +++++..+..+...-.+. +..-.+. -.++.......+.++.. ..
T Consensus 73 ~v~aiiG~~~s~~~~a~~~~~~~~---~ip~i~~~~~~~~l~~~~------~~~~~f~-~~~~~~~~~~~~~~~l~~~g~ 142 (387)
T 3i45_A 73 GVHALAGTFLSHVGLAVSDFARQR---KVLFMASEPLTDALTWEK------GNRYTYR-LRPSTYMQAAMLAAEAAKLPI 142 (387)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHH---TCCEEECSCCCGGGTTTT------CCTTEEE-CSCCHHHHHHHHHHHHTTSSC
T ss_pred CCEEEECCcchHHHHHHHHHHHHc---CceEEecCCCchhhhhcc------CCCCEEE-eCCChHHHHHHHHHHHHHcCC
Q ss_pred CEEEEEcCCC-----ChhHHHHHHHhC--CCeeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEe-ChHHHHHHHHHhccc
Q 023179 179 CTVLYPASAK-----ASNEIEEGLSNR--GFEVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVA-SPSAVRSWVNLISDT 250 (286)
Q Consensus 179 ~rvL~~~g~~-----~~~~L~~~L~~~--G~~V~~~~vY~~~~~~~~~~~~~~~~~~~d~Ivft-S~sav~~~~~~~~~~ 250 (286)
++|.++..+. ....+.+.|++. |+++.....|.....+....-..-.....|+|++. +...+..|+..+.+.
T Consensus 143 ~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~ 222 (387)
T 3i45_A 143 TRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVR 222 (387)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHH
T ss_pred CeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHc
Q ss_pred cCC-CceEEEeCHHHHHHHHHcC
Q 023179 251 EQW-SNSVACIGETTASAAKRLG 272 (286)
Q Consensus 251 ~~~-~~~iv~IG~~Ta~~l~~~G 272 (286)
+.. +..++...-.....++..|
T Consensus 223 g~~~~~~i~~~~~~~~~~~~~~~ 245 (387)
T 3i45_A 223 GLFAGRQVVSMLTGEPEYLNPLK 245 (387)
T ss_dssp TSSTTCEEEEEEEESHHHHGGGG
T ss_pred CCCCCCeEEeecCCChHHHHHhh
No 419
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=33.46 E-value=1.6e+02 Score=23.20 Aligned_cols=81 Identities=15% Similarity=0.132 Sum_probs=47.5
Q ss_pred CeEEEeCCCC-chHHHHHHHHhCCCcEEEece----------EEeeeC--CC-chHHHHHHhcCCCccEEEEeCHHH---
Q 023179 51 PKVVVTRERG-KNGKLIKALAKHRIDCLELPL----------IQHAQG--PD-TDRLSSVLNADTIFDWIIITSPEA--- 113 (286)
Q Consensus 51 ~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~----------~~~~~~--~~-~~~l~~~l~~~~~~d~IvFTS~~a--- 113 (286)
|+||||-..+ -+..+++.|.+.|.+|.-+-- ++.... .| .+.+.+ .+..+|.||......
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~---~~~~~d~vi~~ag~~~~~ 77 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAK---QLHGMDAIINVSGSGGKS 77 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHT---TTTTCSEEEECCCCTTSS
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHH---HHcCCCEEEECCcCCCCC
Confidence 5899998665 467889999999987765421 111111 12 223333 246789999876532
Q ss_pred --------HHHHHHHHHHcCCCCcEEEEECh
Q 023179 114 --------GSVFLEAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 114 --------v~~~~~~l~~~~~~~~~i~aVG~ 136 (286)
...+++.+.+.+. .+++.++.
T Consensus 78 ~~~~n~~~~~~l~~a~~~~~~--~~iv~~SS 106 (219)
T 3dqp_A 78 LLKVDLYGAVKLMQAAEKAEV--KRFILLST 106 (219)
T ss_dssp CCCCCCHHHHHHHHHHHHTTC--CEEEEECC
T ss_pred cEeEeHHHHHHHHHHHHHhCC--CEEEEECc
Confidence 4555666555432 35555555
No 420
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=33.44 E-value=1e+02 Score=30.43 Aligned_cols=97 Identities=15% Similarity=0.194 Sum_probs=58.6
Q ss_pred CCEEEEEcCCC-----ChhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHH--cCCCCEEEEeChH-----HHHHHHH
Q 023179 178 KCTVLYPASAK-----ASNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQ--ALSIPVVAVASPS-----AVRSWVN 245 (286)
Q Consensus 178 ~~rvL~~~g~~-----~~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~--~~~~d~IvftS~s-----av~~~~~ 245 (286)
..||++.+-.. +...+...|+..|++|+.+.+ ...+++..+. ..+.|+|.+.|.. .++.+++
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~------~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~ 669 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPL------FQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRK 669 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCT------TBCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCC------CCCHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHHHH
Confidence 34676654332 244667789999998855332 2233444443 2689999998733 4455566
Q ss_pred HhccccCCCceEEEeC--HH-HHHHHHHcCCCeEEeCC
Q 023179 246 LISDTEQWSNSVACIG--ET-TASAAKRLGLKNVYYPT 280 (286)
Q Consensus 246 ~~~~~~~~~~~iv~IG--~~-Ta~~l~~~G~~~v~~~~ 280 (286)
.+++.+..++++++=| +. -.+.+++.|...++.|.
T Consensus 670 ~L~~~G~~~i~VivGG~~p~~d~~~l~~~GaD~~f~~g 707 (727)
T 1req_A 670 ELDKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPG 707 (727)
T ss_dssp HHHHTTCTTSEEEEEESCCGGGHHHHHHTTEEEEECTT
T ss_pred HHHhcCCCCCEEEEcCCCccccHHHHHhCCCCEEEcCC
Confidence 6655443356666665 22 35778999988766554
No 421
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=33.25 E-value=47 Score=28.59 Aligned_cols=30 Identities=10% Similarity=0.229 Sum_probs=22.5
Q ss_pred CCCeEEEeCCCC-chHHHHHHHHhCC--CcEEE
Q 023179 49 SNPKVVVTRERG-KNGKLIKALAKHR--IDCLE 78 (286)
Q Consensus 49 ~g~~VLitR~~~-~~~~l~~~L~~~G--~~v~~ 78 (286)
.+|+||||-..+ -+..+++.|.+.| ..+..
T Consensus 23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~ 55 (346)
T 4egb_A 23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIIN 55 (346)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEE
T ss_pred CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEE
Confidence 478999998866 4678889999999 44443
No 422
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=33.06 E-value=1e+02 Score=25.50 Aligned_cols=72 Identities=10% Similarity=0.073 Sum_probs=42.4
Q ss_pred CCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHHHH
Q 023179 48 NSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEAWK 122 (286)
Q Consensus 48 l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv----FTS~~av~~~~~~l~ 122 (286)
..++.||||-.... +..+++.|.+.|+++...-.... ...+.+.+.+.... .+..+ +++...++.+++.+.
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~ 99 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANR---EAADAVVAAITESG-GEAVAIPGDVGNAADIAAMFSAVD 99 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTT-CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCh---hHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHH
Confidence 34789999987653 67899999999998753211100 01122333332221 22222 367888888887765
Q ss_pred H
Q 023179 123 E 123 (286)
Q Consensus 123 ~ 123 (286)
+
T Consensus 100 ~ 100 (272)
T 4e3z_A 100 R 100 (272)
T ss_dssp H
T ss_pred H
Confidence 4
No 423
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=33.05 E-value=45 Score=27.64 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=46.3
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAW 121 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~-~~d~Iv--FTS~~av~~~~~~l 121 (286)
..+.|++||||-.... +..+++.|.++|++|+.+- .. ....+.+.+.++..+ ...++. +|+..+++.+++.+
T Consensus 3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~---r~-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (252)
T 3h7a_A 3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGR---RN-GEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAA 78 (252)
T ss_dssp --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEE---SS-GGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe---CC-HHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHH
Confidence 4577999999987653 6789999999999876431 11 111233444443322 122221 47889999888877
Q ss_pred HHc
Q 023179 122 KEA 124 (286)
Q Consensus 122 ~~~ 124 (286)
.+.
T Consensus 79 ~~~ 81 (252)
T 3h7a_A 79 DAH 81 (252)
T ss_dssp HHH
T ss_pred Hhh
Confidence 665
No 424
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=33.02 E-value=64 Score=27.61 Aligned_cols=62 Identities=10% Similarity=0.098 Sum_probs=42.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
.|.+|++..+.- ..+...++..|+++..+|+-. ....|.+.+++.+....+...|++++++.
T Consensus 91 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~-~~~~d~~~l~~~l~~~~~~~~v~l~~p~n 152 (354)
T 3ly1_A 91 LEAQLVIPELTY--GDGEHFAKIAGMKVTKVKMLD-NWAFDIEGLKAAVAAYSGPSIVYLVNPNN 152 (354)
T ss_dssp TTCEEEEESSSC--THHHHHHHHTTCEEEEECCCT-TSCCCHHHHHHHHHTCSSCEEEEEESSCT
T ss_pred CCCeEEECCCCc--hHHHHHHHHcCCEEEEecCCC-CCCCCHHHHHHHhccCCCCCEEEEeCCCC
Confidence 477899988763 345667778999999888742 12235577877774324678888877754
No 425
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=32.84 E-value=90 Score=25.60 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=54.8
Q ss_pred CCeEEEeCCCCc-----hHHHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHH
Q 023179 50 NPKVVVTRERGK-----NGKLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWK 122 (286)
Q Consensus 50 g~~VLitR~~~~-----~~~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~ 122 (286)
.++|++...... ..-+.+.|+++|..+...- +......+ .+.+.+.|.....+|+|+.++-..+..+++.+.
T Consensus 118 ~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~ 196 (280)
T 3gyb_A 118 HTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAIFSSNDITAIGALGAAR 196 (280)
T ss_dssp CCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHH
Confidence 345666655432 3456677888888776432 11111100 123555565556789999999888888888888
Q ss_pred HcCC---CCcEEEEEChhh
Q 023179 123 EAGT---PNVRIGVVGAGT 138 (286)
Q Consensus 123 ~~~~---~~~~i~aVG~~T 138 (286)
+.|. +++.++..+..-
T Consensus 197 ~~g~~vP~di~vvg~d~~~ 215 (280)
T 3gyb_A 197 ELGLRVPEDLSIIGYDNTP 215 (280)
T ss_dssp HHTCCTTTTCEEEEESCCH
T ss_pred HcCCCCCCeeEEEEECCch
Confidence 8876 377777777654
No 426
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=32.81 E-value=94 Score=24.71 Aligned_cols=49 Identities=16% Similarity=0.096 Sum_probs=33.8
Q ss_pred CeEEEeCCC-CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHH
Q 023179 51 PKVVVTRER-GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAG 114 (286)
Q Consensus 51 ~~VLitR~~-~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av 114 (286)
++|+|.... +.-..+.+.|++.|+++..++. + + .+..+|.||++-+...
T Consensus 3 ~~I~iid~~~~~~~~~~~~l~~~G~~~~~~~~------~--~-------~l~~~d~lil~G~g~~ 52 (200)
T 1ka9_H 3 MKALLIDYGSGNLRSAAKALEAAGFSVAVAQD------P--K-------AHEEADLLVLPGQGHF 52 (200)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHTTCEEEEESS------T--T-------SCSSCSEEEECCCSCH
T ss_pred cEEEEEeCCCccHHHHHHHHHHCCCeEEEecC------h--H-------HcccCCEEEECCCCcH
Confidence 678888533 3456788999999998886541 1 1 3467999999774443
No 427
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=32.76 E-value=63 Score=27.15 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=40.4
Q ss_pred CCCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHH
Q 023179 45 SASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGS 115 (286)
Q Consensus 45 ~~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~ 115 (286)
-..|.|++|.+.+.......+...|++.|++...+ +..... .......+ ..+..|+++...+....
T Consensus 100 ~~dL~Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v---~~~~~~-~~~~~~al-~~G~vDa~~~~~~~~~~ 165 (308)
T 2x26_A 100 VADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDI---QPTYLT-PADARAAF-QQGNVDAWAIWDPYYSA 165 (308)
T ss_dssp GGGGTTSEEEECTTSHHHHHHHHHHHHTTCCGGGS---EEEECC-HHHHHHHH-HTTSSSEEEEETTHHHH
T ss_pred HHHcCCCEEeeeCCCcHHHHHHHHHHHcCCCHHHe---EEEecC-hHHHHHHH-HcCCCCEEEecchhHHH
Confidence 45788999999754443445667788899864322 112222 23344555 35789998887766544
No 428
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=32.65 E-value=47 Score=26.11 Aligned_cols=49 Identities=10% Similarity=0.082 Sum_probs=33.3
Q ss_pred chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeCHHHH
Q 023179 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAG 114 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~--~~~d~IvFTS~~av 114 (286)
....+.+.|++.|+++...... + .| +.+.+.++.. ..+|.||.|-..++
T Consensus 28 n~~~l~~~l~~~G~~v~~~~iv---~-Dd-~~i~~al~~a~~~~~DlVittGG~s~ 78 (164)
T 3pzy_A 28 CGPIITEWLAQQGFSSAQPEVV---A-DG-SPVGEALRKAIDDDVDVILTSGGTGI 78 (164)
T ss_dssp HHHHHHHHHHHTTCEECCCEEE---C-SS-HHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred HHHHHHHHHHHCCCEEEEEEEe---C-CH-HHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 4568899999999987654433 2 34 6666666442 37899998865554
No 429
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}
Probab=32.61 E-value=55 Score=26.87 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=27.2
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEe
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~ 79 (286)
..+.+++||||-.... +..+++.|.++|++|+.+
T Consensus 3 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~ 37 (264)
T 2pd6_A 3 NRLRSALALVTGAGSGIGRAVSVRLAGEGATVAAC 37 (264)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 4577999999987653 678999999999887643
No 430
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=32.43 E-value=1.8e+02 Score=22.75 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=62.9
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHHc
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l~~~ 124 (286)
+++|||.-... ....+...|+..|+++... .+..+....+.. ..+|.|+.- ..++.+ +++.+.+.
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~a~~~~~~-~~~dlvllD~~l~~~~g~~-~~~~lr~~ 71 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVC--------YDGEEGMYMALN-EPFDVVILDIMLPVHDGWE-ILKSMRES 71 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHH-SCCSEEEEESCCSSSCHHH-HHHHHHHT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEE--------CCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHH-HHHHHHhc
Confidence 46888887665 3457778888888765421 122333344422 468888764 234555 45556654
Q ss_pred CCCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 125 GTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 125 ~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
. ..++++++ +........+.++. |.. ++..+..+.+.|...+..
T Consensus 72 ~-~~~~ii~ls~~~~~~~~~~~~~~---ga~-~~l~Kp~~~~~l~~~i~~ 116 (225)
T 1kgs_A 72 G-VNTPVLMLTALSDVEYRVKGLNM---GAD-DYLPKPFDLRELIARVRA 116 (225)
T ss_dssp T-CCCCEEEEESSCHHHHHHHTCCC---CCS-EEEESSCCHHHHHHHHHH
T ss_pred C-CCCCEEEEeCCCCHHHHHHHHhC---Ccc-EEEeCCCCHHHHHHHHHH
Confidence 3 35555554 55554555554322 443 455666788888777643
No 431
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=32.27 E-value=1.5e+02 Score=21.69 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=14.1
Q ss_pred CCEEEEEcCCCChhHHHHHHHhC
Q 023179 178 KCTVLYPASAKASNEIEEGLSNR 200 (286)
Q Consensus 178 ~~rvL~~~g~~~~~~L~~~L~~~ 200 (286)
.+++++++.......+.+.|...
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~ 26 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQG 26 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC
Confidence 35677666655555666666654
No 432
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=31.97 E-value=36 Score=27.89 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=16.7
Q ss_pred CccEEEEeCHHHHHHHHHHHHHcCC--CCcEEEEECh
Q 023179 102 IFDWIIITSPEAGSVFLEAWKEAGT--PNVRIGVVGA 136 (286)
Q Consensus 102 ~~d~IvFTS~~av~~~~~~l~~~~~--~~~~i~aVG~ 136 (286)
.+|+|+..+-..+..+++.+.+.|. +++.++..+.
T Consensus 180 ~~~ai~~~~d~~a~g~~~al~~~g~vp~di~vvg~d~ 216 (272)
T 3o74_A 180 LPDALVTTSYVLLQGVFDTLQARPVDSRQLQLGTFGD 216 (272)
T ss_dssp CCSEEEESSHHHHHHHHHHHHTSCGGGCCCEEEEESC
T ss_pred CCcEEEEeCchHHHHHHHHHHHcCCCccceEEEEeCC
Confidence 3555555555444445555555443 3344444443
No 433
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=31.80 E-value=71 Score=24.43 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=49.3
Q ss_pred CcEEEEEChhhHHHHHH-hhhccCCCCceeccCCCCCHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCCeeEE
Q 023179 128 NVRIGVVGAGTASIFEE-VIQSSKCSLDVAFSPSKATGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (286)
Q Consensus 128 ~~~i~aVG~~Ta~~L~~-~~~~~~~G~~~~~~~~~~~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~ 206 (286)
+-++++- .+|++.|++ . |+.+..+-+.+ . +++..+.+.+++. +|+.
T Consensus 31 Gf~l~AT-~gTa~~L~e~~------Gl~v~~v~k~~-~-----------------------eG~p~I~d~I~~g--eIdl 77 (134)
T 2xw6_A 31 RFPLVAT-GTTGRRIEEAT------GLTVEKLLSGP-L-----------------------GGDQQMGARVAEG--RILA 77 (134)
T ss_dssp TSCEEEC-HHHHHHHHHHH------CCCCEECSCGG-G-----------------------THHHHHHHHHHTT--CEEE
T ss_pred CCEEEEc-cHHHHHHHHhh------CceEEEEEecC-C-----------------------CCcchHHHHHHCC--CccE
Confidence 4466655 578899988 7 98775552211 0 2444555555443 2322
Q ss_pred EEeeeeecC-----CCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhcc
Q 023179 207 LNTYTTEPV-----HHVDQTVLKQALSIPVVAVASPSAVRSWVNLISD 249 (286)
Q Consensus 207 ~~vY~~~~~-----~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~ 249 (286)
+. ....|. ..+...+.+..-..++-++|+..+++.++..+..
T Consensus 78 VI-nt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~latA~a~v~al~~ 124 (134)
T 2xw6_A 78 VI-FFRDPLTAQPHEPDVQALLRVCDVHGVPLATNPMAAEALIPWLQS 124 (134)
T ss_dssp EE-EECCTTTCCTTSCCSHHHHHHHHHHTCCEECSHHHHHHHHHHHHT
T ss_pred EE-EccCcccCCCccchHHHHHHHHHHcCCCeEcCHHHHHHHHHHHHH
Confidence 22 222211 1122233333345677799999999999988754
No 434
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=31.79 E-value=80 Score=26.30 Aligned_cols=74 Identities=14% Similarity=-0.021 Sum_probs=38.8
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCC-C----chHHHHHHhcCCCccE--EEEeCHHHHHHHHHHHHHcCCC--CcEEEE
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGP-D----TDRLSSVLNADTIFDW--IIITSPEAGSVFLEAWKEAGTP--NVRIGV 133 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~-~----~~~l~~~l~~~~~~d~--IvFTS~~av~~~~~~l~~~~~~--~~~i~a 133 (286)
.-+.+.|+++|+.- ..++...... + .+.+.+.|......|+ |+..+-..+...++.+.+.|.. ++.++.
T Consensus 153 ~Gf~~~l~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~vvG 230 (306)
T 8abp_A 153 TGSMDALKAAGFPE--KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 230 (306)
T ss_dssp HHHHHHHHHHTCCG--GGEEEEECSSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred HHHHHHHHhcCCCC--cEEEeeccCCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEEEE
Confidence 45666777777531 1122222221 1 1234455544456777 4444555555667777777764 555555
Q ss_pred EChhh
Q 023179 134 VGAGT 138 (286)
Q Consensus 134 VG~~T 138 (286)
.+...
T Consensus 231 ~D~~~ 235 (306)
T 8abp_A 231 INGVD 235 (306)
T ss_dssp ESSGG
T ss_pred eCcHH
Confidence 55444
No 435
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}
Probab=31.70 E-value=55 Score=26.47 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=23.0
Q ss_pred ccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhh---HHHHHHhhhccCCCCceecc
Q 023179 103 FDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGT---ASIFEEVIQSSKCSLDVAFS 158 (286)
Q Consensus 103 ~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~T---a~~L~~~~~~~~~G~~~~~~ 158 (286)
+|.++..+......|...+...+.+.-.+++||... .+.++.. |+.+..+
T Consensus 154 f~~i~~~~kp~~~~~~~~~~~l~~~~~~~i~iGD~~~~Di~~a~~a------G~~~~~v 206 (251)
T 2pke_A 154 FPRIEVVSEKDPQTYARVLSEFDLPAERFVMIGNSLRSDVEPVLAI------GGWGIYT 206 (251)
T ss_dssp CCCEEEESCCSHHHHHHHHHHHTCCGGGEEEEESCCCCCCHHHHHT------TCEEEEC
T ss_pred CceeeeeCCCCHHHHHHHHHHhCcCchhEEEECCCchhhHHHHHHC------CCEEEEE
Confidence 444444433233333333334444444555555554 3445555 5555444
No 436
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=31.66 E-value=56 Score=27.29 Aligned_cols=75 Identities=12% Similarity=0.005 Sum_probs=46.0
Q ss_pred CCCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHH
Q 023179 45 SASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLE 119 (286)
Q Consensus 45 ~~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv----FTS~~av~~~~~ 119 (286)
...+.|+++|||-.... ...+++.|.+.|++|+.+-. ......+.+.+.+... ..+..+ +++..+++.+++
T Consensus 13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~ 88 (270)
T 3is3_A 13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYA---NSTKDAEKVVSEIKAL-GSDAIAIKADIRQVPEIVKLFD 88 (270)
T ss_dssp TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEES---SCHHHHHHHHHHHHHT-TCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC---CCHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHH
Confidence 45688999999987653 67899999999998874211 0000112333334222 122332 368888888887
Q ss_pred HHHH
Q 023179 120 AWKE 123 (286)
Q Consensus 120 ~l~~ 123 (286)
.+.+
T Consensus 89 ~~~~ 92 (270)
T 3is3_A 89 QAVA 92 (270)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 437
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=31.65 E-value=1.4e+02 Score=24.31 Aligned_cols=67 Identities=15% Similarity=0.096 Sum_probs=43.5
Q ss_pred CCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHHHHH
Q 023179 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEAWKE 123 (286)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv--FTS~~av~~~~~~l~~ 123 (286)
|++||||-.... +..+++.|.++|++|..+- .+.+.+.+..+.+....++. ++++.+++.+++.+.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~-------r~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 71 (247)
T 3dii_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFID-------IDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAME 71 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-------SCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe-------CCHHHHHHHHHhcccCCeEEeeCCCHHHHHHHHHHHHH
Confidence 689999987653 6789999999999876531 12233444443334333332 4788888888876654
No 438
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=31.49 E-value=1.4e+02 Score=21.27 Aligned_cols=110 Identities=12% Similarity=0.108 Sum_probs=63.2
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc-CCCccEEEEeC----HHHHHHHHHHHHH
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTIFDWIIITS----PEAGSVFLEAWKE 123 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~-~~~~d~IvFTS----~~av~~~~~~l~~ 123 (286)
..+|||.-... ....+...|+..|+.+... .+.++....+.. ...+|.|++-- .++.+ +++.+.+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~--------~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~-~~~~l~~ 73 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTA--------SSSTEGLRIFTENCNSIDVVITDMKMPKLSGMD-ILREIKK 73 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHH-HHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEe--------CCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHH-HHHHHHH
Confidence 46888887664 3567888888888755421 122334444532 35789888753 24554 5555665
Q ss_pred cCCCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 124 AGTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 124 ~~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
.. +.++++++ +........+.++. |.. ++..+..+.+.|...|..
T Consensus 74 ~~-~~~~ii~ls~~~~~~~~~~~~~~---g~~-~~l~kp~~~~~l~~~l~~ 119 (143)
T 3jte_A 74 IT-PHMAVIILTGHGDLDNAILAMKE---GAF-EYLRKPVTAQDLSIAINN 119 (143)
T ss_dssp HC-TTCEEEEEECTTCHHHHHHHHHT---TCS-EEEESSCCHHHHHHHHHH
T ss_pred hC-CCCeEEEEECCCCHHHHHHHHHh---Ccc-eeEeCCCCHHHHHHHHHH
Confidence 43 45565544 44444333333222 554 455566788888777643
No 439
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=31.43 E-value=1.1e+02 Score=26.64 Aligned_cols=61 Identities=15% Similarity=0.087 Sum_probs=41.5
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEE-----eeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ-----HAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~-----~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
.|.+|++..+.- ..+...++..|+++..+|+-. .....|.+.+++.+.. ....|++++|+.
T Consensus 125 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~~v~~~~p~n 190 (407)
T 3nra_A 125 RGDKVAIVQPDY--FANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA--GARVFLFSNPNN 190 (407)
T ss_dssp TTCEEEEEESCC--THHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT--TCCEEEEESSCT
T ss_pred CCCEEEEcCCcc--cchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh--CCcEEEEcCCCC
Confidence 477899988764 345677788999999988731 1222255677777743 567888887753
No 440
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Probab=31.42 E-value=56 Score=27.14 Aligned_cols=71 Identities=6% Similarity=0.001 Sum_probs=42.4
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAW 121 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~-~~d~Iv--FTS~~av~~~~~~l 121 (286)
..+.|++||||-.... +..+++.|.++|++|..+- . +.+.+.+..+.+. ...++. ++++.+++.+++.+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~---r----~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 75 (260)
T 1nff_A 3 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGD---I----LDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTA 75 (260)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE---S----CHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe---C----CHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHH
Confidence 4578999999987653 6789999999999876431 1 1122322222221 111211 36777887777655
Q ss_pred HH
Q 023179 122 KE 123 (286)
Q Consensus 122 ~~ 123 (286)
.+
T Consensus 76 ~~ 77 (260)
T 1nff_A 76 VT 77 (260)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 441
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Probab=31.21 E-value=94 Score=24.05 Aligned_cols=37 Identities=5% Similarity=-0.121 Sum_probs=21.9
Q ss_pred CHHHHHHhcccCCCCCCEEEEEcCCCChhHHHHHHHhCCC
Q 023179 163 TGKILASELPKNGKKKCTVLYPASAKASNEIEEGLSNRGF 202 (286)
Q Consensus 163 ~~e~L~~~L~~~~~~~~rvL~~~g~~~~~~L~~~L~~~G~ 202 (286)
....+++.|.+ .|.++.++.+...+......|+..|+
T Consensus 72 g~~e~L~~L~~---~G~~v~ivT~~~~~~~~~~~l~~~gl 108 (187)
T 2wm8_A 72 EVPEVLKRLQS---LGVPGAAASRTSEIEGANQLLELFDL 108 (187)
T ss_dssp THHHHHHHHHH---HTCCEEEEECCSCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHH---CCceEEEEeCCCChHHHHHHHHHcCc
Confidence 44555566654 34567777665434556667777665
No 442
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=31.18 E-value=46 Score=26.92 Aligned_cols=50 Identities=10% Similarity=0.076 Sum_probs=34.2
Q ss_pred chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC--CCccEEEEeCHHHH
Q 023179 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD--TIFDWIIITSPEAG 114 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~--~~~d~IvFTS~~av 114 (286)
....+.+.|++.|+++...... + .|.+.+.+.++.. ..+|.||.|-..++
T Consensus 50 n~~~L~~~L~~~G~~v~~~~iv---~-Dd~~~I~~al~~a~~~~~DlVIttGGts~ 101 (185)
T 3rfq_A 50 SGPLVTELLTEAGFVVDGVVAV---E-ADEVDIRNALNTAVIGGVDLVVSVGGTGV 101 (185)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEE---C-SCHHHHHHHHHHHHHTTCSEEEEESCCSS
T ss_pred HHHHHHHHHHHCCCEEEEEEEe---C-CCHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 3568889999999887765433 2 2345566666443 57999999876664
No 443
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=31.15 E-value=1.2e+02 Score=26.00 Aligned_cols=82 Identities=11% Similarity=0.144 Sum_probs=46.3
Q ss_pred CCeEEEeCCCC-----chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe-CHHHHHHHHHHHHH
Q 023179 50 NPKVVVTRERG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT-SPEAGSVFLEAWKE 123 (286)
Q Consensus 50 g~~VLitR~~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT-S~~av~~~~~~l~~ 123 (286)
.++|.+..... ....+.+.|+++|+.+.....+... ..|.......+.. ...|.|++. +...+..+++.+.+
T Consensus 141 ~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~-~~d~~~~~~~l~~-~~~d~v~~~~~~~~a~~~~~~~~~ 218 (364)
T 3lop_A 141 VTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPRN-TANVGPAVDKLLA-ADVQAIFLGATAEPAAQFVRQYRA 218 (364)
T ss_dssp CCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECTT-SCCCHHHHHHHHH-SCCSEEEEESCHHHHHHHHHHHHH
T ss_pred CceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecCC-CccHHHHHHHHHh-CCCCEEEEecCcHHHHHHHHHHHH
Confidence 45666664432 2346677888899886533222211 1233333333422 568888884 46666677888888
Q ss_pred cCCCCcEEEEE
Q 023179 124 AGTPNVRIGVV 134 (286)
Q Consensus 124 ~~~~~~~i~aV 134 (286)
.++. .+++..
T Consensus 219 ~g~~-~~~i~~ 228 (364)
T 3lop_A 219 RGGE-AQLLGL 228 (364)
T ss_dssp TTCC-CEEEEC
T ss_pred cCCC-CeEEEe
Confidence 7764 445443
No 444
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=30.99 E-value=1.8e+02 Score=25.16 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=46.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEe--eeCCCchHHHHHHhcCCCccEEEEeCHHH----------HHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQH--AQGPDTDRLSSVLNADTIFDWIIITSPEA----------GSV 116 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~--~~~~~~~~l~~~l~~~~~~d~IvFTS~~a----------v~~ 116 (286)
.|.+|++..+.- ..+...++..|+++..+|+-.. ....|.+.+++.+. ......|++++++. ++.
T Consensus 112 ~gd~vl~~~p~~--~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~-~~~~~~v~~~~~~nptG~~~~~~~l~~ 188 (399)
T 1c7n_A 112 PGDGVIIITPVY--YPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSK-DKNNKALLFCSPHNPVGRVWKKDELQK 188 (399)
T ss_dssp TTCEEEECSSCC--THHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHT-CTTEEEEEEESSBTTTTBCCCHHHHHH
T ss_pred CCCEEEEcCCCc--HhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhc-cCCCcEEEEcCCCCCCCcCcCHHHHHH
Confidence 377899988753 3355667778999999987522 11135677877773 24567888877654 455
Q ss_pred HHHHHHHc
Q 023179 117 FLEAWKEA 124 (286)
Q Consensus 117 ~~~~l~~~ 124 (286)
+.+.+.++
T Consensus 189 i~~~~~~~ 196 (399)
T 1c7n_A 189 IKDIVLKS 196 (399)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHc
Confidence 55555554
No 445
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=30.98 E-value=33 Score=30.11 Aligned_cols=62 Identities=10% Similarity=0.058 Sum_probs=41.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
.|.+|+++.+.--...+...++..|+++..+|+- .....|.+.+++.+.. .+...|++++++
T Consensus 87 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~d~~~l~~~i~~-~~~~~v~~~~~~ 148 (411)
T 3nnk_A 87 PGDKVLVPVFGRFGHLLCEIARRCRAEVHTIEVP-WGEVFTPDQVEDAVKR-IRPRLLLTVQGD 148 (411)
T ss_dssp TTCEEEEEECSHHHHHHHHHHHHTTCEEEEEECC-TTCCCCHHHHHHHHHH-HCCSEEEEESEE
T ss_pred CCCEEEEecCCchHHHHHHHHHHcCCeEEEEecC-CCCCCCHHHHHHHHhh-CCCeEEEEeCCC
Confidence 4778999887543344777888899999998862 1112255677777732 257788888843
No 446
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=30.76 E-value=54 Score=27.47 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCcEEEeceEEeeeCCCc----hHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC----CCcEEEEE
Q 023179 63 GKLIKALAKHRIDCLELPLIQHAQGPDT----DRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT----PNVRIGVV 134 (286)
Q Consensus 63 ~~l~~~L~~~G~~v~~~P~~~~~~~~~~----~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~----~~~~i~aV 134 (286)
.-+.+.|+++|+++.... ...+. ..+.+.|......|+|+..+-..+..+++.+.+.|. .++.++..
T Consensus 150 ~Gf~~~l~~~g~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~A~g~~~al~~~g~~vP~~dv~vig~ 224 (297)
T 3rot_A 150 YGIKTILQDKGIFFEELD-----VGTDPNQVQSRVKSYFKIHPETNIIFCLTSQALDPLGQMLLHPDRYDFNYQPQVYSF 224 (297)
T ss_dssp HHHHHHHHHTTCEEEEEE-----CCSCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHHHHSHHHHTCCCCCEEEEE
T ss_pred HHHHHHHHhcCCeEEEee-----cCCChHHHHHHHHHHHHhCCCCCEEEEcCCcchHHHHHHHHhcCCccCCCceEEEEe
Confidence 456778888888876532 11121 234455655567899999888887778888877765 37888888
Q ss_pred ChhhH
Q 023179 135 GAGTA 139 (286)
Q Consensus 135 G~~Ta 139 (286)
+....
T Consensus 225 D~~~~ 229 (297)
T 3rot_A 225 DKTPN 229 (297)
T ss_dssp CCCHH
T ss_pred CCCHH
Confidence 76544
No 447
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=30.73 E-value=99 Score=27.18 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=42.0
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEE------------eeeCCCchHHHHHHhcCCCccEEEEeCHHHHHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSV 116 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~ 116 (286)
.+++|||.-....+..+++.+++.|++++.+-... ..+..|.+.+.+..+ ...+|.|+...-.....
T Consensus 10 ~~~~ili~g~g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~~~d~~~~~~~~d~~~l~~~~~-~~~~d~v~~~~e~~~~~ 88 (391)
T 1kjq_A 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVE-LEKPHYIVPEIEAIATD 88 (391)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGSSEEEECCTTCHHHHHHHHH-HHCCSEEEECSSCSCHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCCchhhhccceEECCCCCHHHHHHHHH-HcCCCEEEECCCcCCHH
Confidence 36899999665456788999999999886653211 011123334444442 23688888765332222
Q ss_pred HHHHHHH
Q 023179 117 FLEAWKE 123 (286)
Q Consensus 117 ~~~~l~~ 123 (286)
+.+.+..
T Consensus 89 ~~~~l~~ 95 (391)
T 1kjq_A 89 MLIQLEE 95 (391)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 3344444
No 448
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=30.68 E-value=1.2e+02 Score=26.02 Aligned_cols=81 Identities=15% Similarity=0.010 Sum_probs=49.1
Q ss_pred CCCeEEEeCC-CC-----chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEE-eCHHHHHHHHHHH
Q 023179 49 SNPKVVVTRE-RG-----KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIII-TSPEAGSVFLEAW 121 (286)
Q Consensus 49 ~g~~VLitR~-~~-----~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvF-TS~~av~~~~~~l 121 (286)
..++|.+... .. ..+.+.+.++++|+.+...- +... ..|.......+.. ...|.|++ .+...+..+++.+
T Consensus 148 g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~~~~-~~d~~~~~~~l~~-~~~d~v~~~~~~~~a~~~~~~~ 224 (366)
T 3td9_A 148 GAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-FRSG-DQDFSAQLSVAMS-FNPDAIYITGYYPEIALISRQA 224 (366)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-ECTT-CCCCHHHHHHHHH-TCCSEEEECSCHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-eCCC-CccHHHHHHHHHh-cCCCEEEEccchhHHHHHHHHH
Confidence 3467776632 22 12456778889999876544 3321 1233333333322 56899998 7777777788888
Q ss_pred HHcCCCCcEEEE
Q 023179 122 KEAGTPNVRIGV 133 (286)
Q Consensus 122 ~~~~~~~~~i~a 133 (286)
.+.++. .+++.
T Consensus 225 ~~~g~~-~~~~~ 235 (366)
T 3td9_A 225 RQLGFT-GYILA 235 (366)
T ss_dssp HHTTCC-SEEEE
T ss_pred HHcCCC-ceEEe
Confidence 887774 45543
No 449
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=30.65 E-value=41 Score=27.99 Aligned_cols=43 Identities=16% Similarity=0.095 Sum_probs=23.8
Q ss_pred HHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEC
Q 023179 93 LSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVG 135 (286)
Q Consensus 93 l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG 135 (286)
+.+.++....+|+|+..+-..+..+++.+.+.|.+++.++..+
T Consensus 182 ~~~ll~~~~~~~ai~~~~d~~a~g~~~al~~~g~~dv~vig~d 224 (290)
T 2fn9_A 182 TEQILQAHPEIKAIWCGNDAMALGAMKACEAAGRTDIYIFGFD 224 (290)
T ss_dssp HHHHHHHCTTCCEEEESSHHHHHHHHHHHHHTTCTTCEEECCB
T ss_pred HHHHHHhCCCCcEEEECCchHHHHHHHHHHHCCCCCeEEEEeC
Confidence 3344433345677776666655556666666665444444444
No 450
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=30.60 E-value=1.5e+02 Score=25.97 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCCC-----hhHHHHHHHhCCCeeEEEEeeeeecCCCCcHHHHHHc--CCCCEEEEeC--hHHHHHHHHHh
Q 023179 177 KKCTVLYPASAKA-----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVDQTVLKQA--LSIPVVAVAS--PSAVRSWVNLI 247 (286)
Q Consensus 177 ~~~rvL~~~g~~~-----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~~~--~~~d~IvftS--~sav~~~~~~~ 247 (286)
+.++|.++..+.. .+.+.+.+++.|++|.....|.... .+ ....+..+ .+.|+|++.+ +..+..|+..+
T Consensus 163 ~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~-~d-~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~ 240 (419)
T 3h5l_A 163 PNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPV-SD-WGPTLAKLRADPPAVIVVTHFYPQDQALFMNQF 240 (419)
T ss_dssp SSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSC-SC-CHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCC-cc-HHHHHHHHHhcCCCEEEEccccCchHHHHHHHH
Confidence 3478888876543 4567788889999987766665432 22 22333333 5899999874 56778888888
Q ss_pred ccccCCCceEEEe
Q 023179 248 SDTEQWSNSVACI 260 (286)
Q Consensus 248 ~~~~~~~~~iv~I 260 (286)
.+.+. +..++..
T Consensus 241 ~~~g~-~~~~~~~ 252 (419)
T 3h5l_A 241 MTDPT-NSLVYLQ 252 (419)
T ss_dssp TTSCC-SCEEEEC
T ss_pred HHcCC-CceEEec
Confidence 76543 4455443
No 451
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=30.55 E-value=52 Score=27.29 Aligned_cols=73 Identities=8% Similarity=0.053 Sum_probs=44.6
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv----FTS~~av~~~~~~ 120 (286)
..+.|++||||-... -...+++.|.++|++|+.+ .... ...+++.+.++.. ..+..+ ++++.+++.+++.
T Consensus 2 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~---~r~~-~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~ 76 (257)
T 3imf_A 2 NAMKEKVVIITGGSSGMGKGMATRFAKEGARVVIT---GRTK-EKLEEAKLEIEQF-PGQILTVQMDVRNTDDIQKMIEQ 76 (257)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEE---ESCH-HHHHHHHHHHCCS-TTCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE---eCCH-HHHHHHHHHHHhc-CCcEEEEEccCCCHHHHHHHHHH
Confidence 467899999998765 3678999999999987642 1110 0112233333221 112222 3688888888877
Q ss_pred HHH
Q 023179 121 WKE 123 (286)
Q Consensus 121 l~~ 123 (286)
+.+
T Consensus 77 ~~~ 79 (257)
T 3imf_A 77 IDE 79 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 452
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=30.53 E-value=58 Score=25.96 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=32.2
Q ss_pred hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc-CCC--ccEEEEeCHHHH
Q 023179 62 NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTI--FDWIIITSPEAG 114 (286)
Q Consensus 62 ~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~-~~~--~d~IvFTS~~av 114 (286)
...+.+.|++.|+++..... .+ .|.+.+.+.++. +.. +|.||.|-..++
T Consensus 42 ~~~L~~~l~~~G~~v~~~~i---v~-Dd~~~I~~al~~a~~~~~~DlVittGG~s~ 93 (178)
T 2pjk_A 42 GDIIKQLLIENGHKIIGYSL---VP-DDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEEE---EC-SCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred HHHHHHHHHHCCCEEEEEEE---eC-CCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 46788999999998775433 22 234556666543 233 899998866554
No 453
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=30.49 E-value=1.2e+02 Score=24.04 Aligned_cols=60 Identities=17% Similarity=0.124 Sum_probs=38.9
Q ss_pred CCCCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 023179 46 ASNSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
..|.|++|.+.+.......+.+.+.+.|+++.. ....+.....+.+ ..+..|+++...+.
T Consensus 144 ~dL~g~~i~~~~g~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~l-~~g~vDa~~~~~~~ 203 (259)
T 2v25_A 144 ADMKGANIGVAQAATTKKAIGEAAKKIGIDVKF------SEFPDYPSIKAAL-DAKRVDAFSVDKSI 203 (259)
T ss_dssp GGCTTCEEEEETTCSHHHHHHHHHHHTTCCCEE------EEESSHHHHHHHH-HTTSSSEEEEEHHH
T ss_pred HHhCCCEEEEecCCchHHHHHHHHHhcCCceeE------EEeCCHHHHHHHH-HcCCCcEEEecHHH
Confidence 567899999988776666777777788875421 1222334455555 45788987766543
No 454
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=30.46 E-value=1.3e+02 Score=29.68 Aligned_cols=78 Identities=13% Similarity=0.126 Sum_probs=55.4
Q ss_pred eEEEeCCCC------chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcC
Q 023179 52 KVVVTRERG------KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAG 125 (286)
Q Consensus 52 ~VLitR~~~------~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~ 125 (286)
.|++..+.+ .-.+|++.|++.|++|+.. .+.++....++....+++||++---....+++.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~i~~L~~~Le~~g~~V~~a--------~s~~Da~~~i~~~~~i~avIld~d~~~~~ll~~Ir~~~ 74 (715)
T 3n75_A 3 VIAILNHMGVYFKEEPIRELHRALERLNFQIVYP--------NDRDDLLKLIENNARLCGVIFDWDKYNLELCEEISKMN 74 (715)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHHHTTCEEECC--------SSHHHHHHHHHHCTTEEEEEEEHHHHHHHHHHHHHHHC
T ss_pred eEEEccCCCcccchHHHHHHHHHHHHCCcEEEEe--------CCHHHHHHHHHhCCCceEEEEeccccHHHHHHHHHHhC
Confidence 455655543 2368899999999998532 23455666676667899999998766566778777654
Q ss_pred CCCcEEEEEChhh
Q 023179 126 TPNVRIGVVGAGT 138 (286)
Q Consensus 126 ~~~~~i~aVG~~T 138 (286)
.+++||.++...
T Consensus 75 -~~iPVFl~~~~~ 86 (715)
T 3n75_A 75 -ENLPLYAFANTY 86 (715)
T ss_dssp -TTCEEEEECCTT
T ss_pred -CCCCEEEEecCC
Confidence 488999888774
No 455
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=30.43 E-value=1.7e+02 Score=25.81 Aligned_cols=77 Identities=10% Similarity=0.032 Sum_probs=47.3
Q ss_pred CCCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEE-------------eeeCCCchHHHHHHhcCCCccEEEEe-CHHH
Q 023179 48 NSNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ-------------HAQGPDTDRLSSVLNADTIFDWIIIT-SPEA 113 (286)
Q Consensus 48 l~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~-------------~~~~~~~~~l~~~l~~~~~~d~IvFT-S~~a 113 (286)
..+++|||.-.....-.+.+.+++.|+.++.+-... ..+..|.+.+.+.. .....|.|+.. +-..
T Consensus 5 ~~~~~ilI~g~g~~~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~-~~~~~d~v~~~~~~~~ 83 (403)
T 4dim_A 5 YDNKRLLILGAGRGQLGLYKAAKELGIHTIAGTMPNAHKPCLNLADEISYMDISNPDEVEQKV-KDLNLDGAATCCLDTG 83 (403)
T ss_dssp -CCCEEEEECCCGGGHHHHHHHHHHTCEEEEEECSSCCHHHHHHCSEEEECCTTCHHHHHHHT-TTSCCSEEECCSCSTT
T ss_pred cCCCEEEEECCcHhHHHHHHHHHHCCCEEEEEcCCCCCCcchhhCCeEEEecCCCHHHHHHHH-HHcCCCEEEeCCcchh
Confidence 357899999877777889999999999988763211 11112334455544 33467888863 3444
Q ss_pred HHHHHHHHHHcC
Q 023179 114 GSVFLEAWKEAG 125 (286)
Q Consensus 114 v~~~~~~l~~~~ 125 (286)
+..+.+.+.+.+
T Consensus 84 ~~~~a~~~~~~g 95 (403)
T 4dim_A 84 IVSLARICDKEN 95 (403)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 444555444444
No 456
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=30.39 E-value=1.4e+02 Score=20.90 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=57.7
Q ss_pred CCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHHc
Q 023179 50 NPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (286)
Q Consensus 50 g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~l~~~ 124 (286)
.++|||.-.... ...+...|+ .|+++.. ..+.++..+.+.. ..+|.|++-- .++.+ +++.+.+.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~--------~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~-~~~~l~~~ 72 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTT--------AADGASGLQQALA-HPPDVLISDVNMDGMDGYA-LCGHFRSE 72 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEE--------ESSHHHHHHHHHH-SCCSEEEECSSCSSSCHHH-HHHHHHHS
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEE--------ECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHH-HHHHHHhC
Confidence 478999987654 345555554 6765432 1233444444533 5688887742 24555 55666664
Q ss_pred C-CCCcEEEEEChh-hHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 125 G-TPNVRIGVVGAG-TASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 125 ~-~~~~~i~aVG~~-Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
. ...++++++... .... .+.++. |.. ++..+..+.+.|...+..
T Consensus 73 ~~~~~~pii~~s~~~~~~~-~~~~~~---g~~-~~l~KP~~~~~l~~~i~~ 118 (133)
T 3nhm_A 73 PTLKHIPVIFVSGYAPRTE-GPADQP---VPD-AYLVKPVKPPVLIAQLHA 118 (133)
T ss_dssp TTTTTCCEEEEESCCC------TTSC---CCS-EEEESSCCHHHHHHHHHH
T ss_pred CccCCCCEEEEeCCCcHhH-HHHhhc---CCc-eEEeccCCHHHHHHHHHH
Confidence 3 346666665543 3333 333222 543 456667788888777754
No 457
>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*
Probab=30.36 E-value=53 Score=27.82 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=42.0
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHc
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEA 124 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~ 124 (286)
.|.||.+|||-... -...+++.|.+.|++|+..-. ... +.+.+.+ .-..| +|++.+++.+++...+.
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r--~~~----~~~~~~~--~~~~D---v~~~~~v~~~~~~~~~~ 75 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTAR--ARP----EGLPEEL--FVEAD---LTTKEGCAIVAEATRQR 75 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEES--SCC----TTSCTTT--EEECC---TTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEEC--Cch----hCCCcEE--EEEcC---CCCHHHHHHHHHHHHHH
Confidence 67899999997664 367899999999999875321 111 1111111 00112 47788888887776553
No 458
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}
Probab=30.28 E-value=44 Score=27.67 Aligned_cols=74 Identities=7% Similarity=0.060 Sum_probs=43.1
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC----CCccEEE--EeCHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD----TIFDWII--ITSPEAGSVFL 118 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~----~~~d~Iv--FTS~~av~~~~ 118 (286)
..+.|+++|||-.... +..+++.|.++|++|+.+- ... ...+.+.+.+... ....++. +++..+++.++
T Consensus 3 ~~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~---r~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 78 (250)
T 3nyw_A 3 LEKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIA---RSK-QNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEI 78 (250)
T ss_dssp --CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEE---SCH-HHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEE---CCH-HHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHH
Confidence 4678999999987653 6789999999999876431 111 0112222222221 2222221 47888888887
Q ss_pred HHHHH
Q 023179 119 EAWKE 123 (286)
Q Consensus 119 ~~l~~ 123 (286)
+.+.+
T Consensus 79 ~~~~~ 83 (250)
T 3nyw_A 79 KDIHQ 83 (250)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 459
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=29.97 E-value=27 Score=30.31 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=39.3
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
.|.+|+++.+.- ..+...++..|+++..+|+..... .|.+.+++.+. .+...|++++|+.
T Consensus 105 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~--~~~~~v~~~~p~n 164 (365)
T 3get_A 105 SKNAFLQAGVTF--AMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHK--DEIKLIFLCLPNN 164 (365)
T ss_dssp TTCEEEECSSCC--THHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTT--TTEEEEEEESSCT
T ss_pred CCCEEEEeCCCh--HHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhC--CCCCEEEEcCCCC
Confidence 478899988753 355566777899999998711111 23455666552 5678888876654
No 460
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*
Probab=29.96 E-value=60 Score=26.69 Aligned_cols=72 Identities=10% Similarity=0.012 Sum_probs=44.0
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCC-CccEEE--EeCHHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADT-IFDWII--ITSPEAGSVFLEAW 121 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~-~~d~Iv--FTS~~av~~~~~~l 121 (286)
..+.|++||||-.... ...+++.|.++|++|+.+- . .+ .+.+.+.++... ...++. ++++.+++.+++.+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~---r--~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (249)
T 2ew8_A 3 QRLKDKLAVITGGANGIGRAIAERFAVEGADIAIAD---L--VP-APEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQV 76 (249)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE---S--SC-CHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEc---C--Cc-hhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 3577999999987653 6789999999999876431 1 11 123333332222 222221 36788888877766
Q ss_pred HH
Q 023179 122 KE 123 (286)
Q Consensus 122 ~~ 123 (286)
.+
T Consensus 77 ~~ 78 (249)
T 2ew8_A 77 IS 78 (249)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 461
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2
Probab=29.84 E-value=58 Score=27.06 Aligned_cols=74 Identities=8% Similarity=0.025 Sum_probs=42.5
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEE----EeCHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWII----ITSPEAGSVFLE 119 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~-~~~d~Iv----FTS~~av~~~~~ 119 (286)
..+.|++||||-.... +..+++.|.++|++|+.+- ... ...+.+.+.+... ...+..+ ++++.+++.+++
T Consensus 9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~---r~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 84 (267)
T 1iy8_A 9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVD---VSS-EGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVT 84 (267)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE---SCH-HHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe---CCH-HHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHH
Confidence 4577999999987653 6789999999999876431 111 0111222222111 0122222 367888888777
Q ss_pred HHHH
Q 023179 120 AWKE 123 (286)
Q Consensus 120 ~l~~ 123 (286)
.+.+
T Consensus 85 ~~~~ 88 (267)
T 1iy8_A 85 ATTE 88 (267)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 462
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=29.71 E-value=57 Score=27.32 Aligned_cols=71 Identities=13% Similarity=0.046 Sum_probs=40.4
Q ss_pred cCCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHH
Q 023179 44 ASASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (286)
Q Consensus 44 ~~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv--FTS~~av~~~~~~ 120 (286)
+...+.+++||||-... -+..+++.|.+.|++|+.+-. +.+.+.+ + ......++. +++..+++.+++.
T Consensus 10 m~~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r-------~~~~~~~-~-~~~~~~~~~~Dv~d~~~v~~~~~~ 80 (266)
T 3p19_A 10 MGRGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLAR-------RVERLKA-L-NLPNTLCAQVDVTDKYTFDTAITR 80 (266)
T ss_dssp -----CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEES-------CHHHHHT-T-CCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC-------CHHHHHH-h-hcCCceEEEecCCCHHHHHHHHHH
Confidence 34567799999998765 367899999999999875311 1122221 1 111121211 3677888877776
Q ss_pred HHH
Q 023179 121 WKE 123 (286)
Q Consensus 121 l~~ 123 (286)
+.+
T Consensus 81 ~~~ 83 (266)
T 3p19_A 81 AEK 83 (266)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 463
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=29.55 E-value=99 Score=26.05 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCChhHHHHHHHhCCCeeEE
Q 023179 178 KCTVLYPASAKASNEIEEGLSNRGFEVVR 206 (286)
Q Consensus 178 ~~rvL~~~g~~~~~~L~~~L~~~G~~V~~ 206 (286)
+...+++.+..+.+.+.+.|.+.|+.+..
T Consensus 117 ~~~~lIlq~~~~~~~lr~~L~~~Gf~i~~ 145 (244)
T 3gnl_A 117 GVTKLILQPNIAAWQLREWSEQNNWLITS 145 (244)
T ss_dssp TCCEEEEEESSCHHHHHHHHHHHTEEEEE
T ss_pred CCCEEEEEcCCChHHHHHHHHHCCCEEEE
Confidence 34667788888999999999999998744
No 464
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=29.55 E-value=61 Score=26.89 Aligned_cols=73 Identities=14% Similarity=0.006 Sum_probs=43.6
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLEA 120 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv----FTS~~av~~~~~~ 120 (286)
..+.|++||||-... -...+++.|.++|++|..+- ... ...+.+.+.+... ..+..+ ++++.+++.+++.
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~---r~~-~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~ 77 (262)
T 1zem_A 3 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLD---MNR-EALEKAEASVREK-GVEARSYVCDVTSEEAVIGTVDS 77 (262)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE---SCH-HHHHHHHHHHHTT-TSCEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe---CCH-HHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHH
Confidence 457899999998765 36789999999999876431 110 0112222333221 122222 3678888877776
Q ss_pred HHH
Q 023179 121 WKE 123 (286)
Q Consensus 121 l~~ 123 (286)
+.+
T Consensus 78 ~~~ 80 (262)
T 1zem_A 78 VVR 80 (262)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 465
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=29.54 E-value=77 Score=26.07 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=16.6
Q ss_pred CCCEEEEEcCC--C-ChhHHHHHHHhCCCee
Q 023179 177 KKCTVLYPASA--K-ASNEIEEGLSNRGFEV 204 (286)
Q Consensus 177 ~~~rvL~~~g~--~-~~~~L~~~L~~~G~~V 204 (286)
.++++|+..|. . -...+...|.++|++|
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V 43 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGAEL 43 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCE
Confidence 45666666644 2 2445666777777665
No 466
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=29.39 E-value=56 Score=28.13 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=15.2
Q ss_pred HHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC
Q 023179 95 SVLNADTIFDWIIITSPEAGSVFLEAWKEAGT 126 (286)
Q Consensus 95 ~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~ 126 (286)
+.|+....+|+|+..+-..+-.+++.+.+.|+
T Consensus 240 ~ll~~~~~~~ai~~~nd~~A~g~~~al~~~g~ 271 (344)
T 3kjx_A 240 AMLERSPDLDFLYYSNDMIAAGGLLYLLEQGI 271 (344)
T ss_dssp HHHHHSTTCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCCEEEECCHHHHHHHHHHHHHcCC
Confidence 33333334555555555444444555555443
No 467
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=29.38 E-value=87 Score=25.80 Aligned_cols=74 Identities=18% Similarity=0.177 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCC---CCcEEEEEChh
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGT---PNVRIGVVGAG 137 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~---~~~~i~aVG~~ 137 (286)
-+.+.|+++|..+...-.+......+ .+.+.+.++....+|+|+..+-..+..+++.+.+.|+ +++.++..+..
T Consensus 160 gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~g~~~al~~~g~~vP~di~vvg~d~~ 238 (296)
T 3brq_A 160 GYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFDDI 238 (296)
T ss_dssp HHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEESSHHHHHHHHHHHHHHTCCTTTTCEEEEESCC
T ss_pred HHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEECChHHHHHHHHHHHHcCCCCCCceEEEeecCc
Confidence 35566777776654322221111000 1233444533346788888877766667777777665 35566666554
No 468
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=29.20 E-value=81 Score=27.21 Aligned_cols=54 Identities=15% Similarity=0.042 Sum_probs=37.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
.|.+|++..+.- ..+...++..|+++..+| .|.+.+++.+. .+...|++++++.
T Consensus 112 ~gd~vl~~~p~~--~~~~~~~~~~g~~~~~v~-------~d~~~l~~~l~--~~~~~v~~~~p~n 165 (370)
T 2z61_A 112 DGDEVLIQNPCY--PCYKNFIRFLGAKPVFCD-------FTVESLEEALS--DKTKAIIINSPSN 165 (370)
T ss_dssp TTCEEEEESSCC--THHHHHHHHTTCEEEEEC-------SSHHHHHHHCC--SSEEEEEEESSCT
T ss_pred CCCEEEEeCCCc--hhHHHHHHHcCCEEEEeC-------CCHHHHHHhcc--cCceEEEEcCCCC
Confidence 477899988764 334556777899998888 35566777662 3567888887653
No 469
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Probab=29.12 E-value=1.3e+02 Score=25.73 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=26.2
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
++.+++||||-..+ -+..+++.|.+.|.+|..+
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 57 (352)
T 1sb8_A 24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGL 57 (352)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 35689999998865 3678889999999887754
No 470
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=29.06 E-value=1.1e+02 Score=26.05 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=30.9
Q ss_pred hhHHHHHHHhCCCee---EEEEeeeeecCCCCcH---HHHHHc--CCCCEEEEeChHHHHHHHHHhc
Q 023179 190 SNEIEEGLSNRGFEV---VRLNTYTTEPVHHVDQ---TVLKQA--LSIPVVAVASPSAVRSWVNLIS 248 (286)
Q Consensus 190 ~~~L~~~L~~~G~~V---~~~~vY~~~~~~~~~~---~~~~~~--~~~d~IvftS~sav~~~~~~~~ 248 (286)
++-+.+.|++.|+.- .++..+.. +.+.. ++.+.+ .++|+|+-....++........
T Consensus 26 ~~G~~~~L~~~G~~~g~nv~~~~~~a---~gd~~~~~~~~~~l~~~~~DlIiai~t~aa~a~~~~~~ 89 (302)
T 3lkv_A 26 RQGLLDGLKAKGYEEGKNLEFDYKTA---QGNPAIAVQIARQFVGENPDVLVGIATPTAQALVSATK 89 (302)
T ss_dssp HHHHHHHHHHTTCCBTTTEEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEESHHHHHHHHHHCS
T ss_pred HHHHHHHHHhhCcccCCcEEEEEEeC---CCCHHHHHHHHHHHHhcCCcEEEEcCCHHHHHHHhhcC
Confidence 456788888887531 12222222 22222 222222 5789888777777777665543
No 471
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=29.02 E-value=46 Score=29.08 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=41.2
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
.|.+|+++.+.-....+...++..|+++..+|+-. ....|.+.+++.+... +...|++++++
T Consensus 108 ~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~~-~~~~v~~~~~~ 169 (393)
T 1vjo_A 108 PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPW-GEVFSLEELRTALETH-RPAILALVHAE 169 (393)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TCCCCHHHHHHHHHHH-CCSEEEEESEE
T ss_pred CCCEEEEEcCChhHHHHHHHHHHcCCceEEEecCC-CCCCCHHHHHHHHhhC-CceEEEEeccC
Confidence 47789998875333336777788899998888632 1123556777777321 46788888874
No 472
>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5
Probab=29.02 E-value=1e+02 Score=26.02 Aligned_cols=116 Identities=13% Similarity=-0.026 Sum_probs=62.3
Q ss_pred HHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEEEChhhHHHHHHh
Q 023179 66 IKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGVVGAGTASIFEEV 145 (286)
Q Consensus 66 ~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~aVG~~Ta~~L~~~ 145 (286)
-+.+++.|++..+.++ ++. ..+...+.+.++ ..+++.+.+|-|.=... +..+.+. + ...+..
T Consensus 21 ~~~~~~~g~~~~y~~~-~~~-~~~l~~~i~~l~-~~~~~G~nVT~P~K~~~-~~~ld~~-------------~-~~A~~i 82 (271)
T 1nyt_A 21 QQFAQQLNIEHPYGRV-LAP-INDFINTLNAFF-SAGGKGANVTVPFKEEA-FARADEL-------------T-ERAALA 82 (271)
T ss_dssp HHHHHHHTCCCCEEEE-ECC-TTCHHHHHHHHH-HTTCCEEEECTTCHHHH-HHHCSEE-------------C-HHHHHH
T ss_pred HHHHHHCCCCcEEEEE-EcC-HHHHHHHHHHHH-hCCCCeEEEccCCHHHH-HHHHhhc-------------C-HHHHHh
Confidence 3566778998877766 332 223333333332 35789999999976554 3433211 0 111111
Q ss_pred hhccCCCCceec-------cCCCCCHHHHHHhcccCC--CCCCEEEEEcCCCChhHHHHHHHhCCCee
Q 023179 146 IQSSKCSLDVAF-------SPSKATGKILASELPKNG--KKKCTVLYPASAKASNEIEEGLSNRGFEV 204 (286)
Q Consensus 146 ~~~~~~G~~~~~-------~~~~~~~e~L~~~L~~~~--~~~~rvL~~~g~~~~~~L~~~L~~~G~~V 204 (286)
+.++... .....+..++...|.+.. ..+++++++.+......+...|.+.|.+|
T Consensus 83 -----gavNti~~~~~g~l~G~ntD~~G~~~~L~~~~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V 145 (271)
T 1nyt_A 83 -----GAVNTLMRLEDGRLLGDNTDGVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAV 145 (271)
T ss_dssp -----TCCSEEEECTTSCEEEECCHHHHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEE
T ss_pred -----CCceEEEEcCCCeEEEeCCCHHHHHHHHHhcCcCcCCCEEEEECCcHHHHHHHHHHHHcCCEE
Confidence 0112111 111134677777765422 25678888876555666778888888544
No 473
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Probab=28.91 E-value=3.1e+02 Score=24.35 Aligned_cols=144 Identities=12% Similarity=0.060 Sum_probs=75.6
Q ss_pred CchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc-CCCccEEEEeC-----HHHHHHHHHHHHHcCCCCcEEEE
Q 023179 60 GKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DTIFDWIIITS-----PEAGSVFLEAWKEAGTPNVRIGV 133 (286)
Q Consensus 60 ~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~-~~~~d~IvFTS-----~~av~~~~~~l~~~~~~~~~i~a 133 (286)
++..++.+.|+++|+.+..+.--..........+...+.. ...+|.|+... +-..+.|...+...+.+.-.++.
T Consensus 103 ~~~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~lg~~p~~~~~ 182 (555)
T 3i28_A 103 RPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLKASPSEVVF 182 (555)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTTSSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGGGEEE
T ss_pred hhHHHHHHHHHHCCCEEEEEeCCCccccchhhHHHHHhhhhhhheeEEEeccccCCCCCCHHHHHHHHHHcCCChhHEEE
Confidence 3456777789999986654332100011112223322212 24578865542 22235677777777776667777
Q ss_pred EChhhHH--HHHHhhhccCCCCceeccCCCCCH-HHHHHhcccC----------------------------------CC
Q 023179 134 VGAGTAS--IFEEVIQSSKCSLDVAFSPSKATG-KILASELPKN----------------------------------GK 176 (286)
Q Consensus 134 VG~~Ta~--~L~~~~~~~~~G~~~~~~~~~~~~-e~L~~~L~~~----------------------------------~~ 176 (286)
||..... ..++. |+.+.......+. +.+.+..... ..
T Consensus 183 v~D~~~di~~a~~a------G~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~g 256 (555)
T 3i28_A 183 LDDIGANLKPARDL------GMVTILVQDTDTALKELEKVTGIQLLNTPAPLPTSCNPSDMSHGYVTVKPRVRLHFVELG 256 (555)
T ss_dssp EESCHHHHHHHHHH------TCEEEECSSHHHHHHHHHHHHCSCCSSCCCCCCCCCCGGGSEEEEEEEETTEEEEEEEEC
T ss_pred ECCcHHHHHHHHHc------CCEEEEECCCccHHHHHHhhhceeeecCCCCCCCCCCCcccceeEEEeCCCcEEEEEEcC
Confidence 7876553 35555 7777665432221 1221111000 01
Q ss_pred CCCEEEEEcCCCCh----hHHHHHHHhCCCeeEEEEe
Q 023179 177 KKCTVLYPASAKAS----NEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 177 ~~~rvL~~~g~~~~----~~L~~~L~~~G~~V~~~~v 209 (286)
.+..|+++.|..+. ..+.+.|.++|+.|..+..
T Consensus 257 ~~p~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~D~ 293 (555)
T 3i28_A 257 SGPAVCLCHGFPESWYSWRYQIPALAQAGYRVLAMDM 293 (555)
T ss_dssp SSSEEEEECCTTCCGGGGTTHHHHHHHTTCEEEEECC
T ss_pred CCCEEEEEeCCCCchhHHHHHHHHHHhCCCEEEEecC
Confidence 23457777776653 3467889888987765543
No 474
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=28.88 E-value=50 Score=28.72 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=45.0
Q ss_pred CCEEEEEcCCCCh-----hHHHHHHHhCCC-eeEEEEeeeeecCCCCcHHHHHHcCCCCEEEEeChHHHHHHHHHhcc
Q 023179 178 KCTVLYPASAKAS-----NEIEEGLSNRGF-EVVRLNTYTTEPVHHVDQTVLKQALSIPVVAVASPSAVRSWVNLISD 249 (286)
Q Consensus 178 ~~rvL~~~g~~~~-----~~L~~~L~~~G~-~V~~~~vY~~~~~~~~~~~~~~~~~~~d~IvftS~sav~~~~~~~~~ 249 (286)
+.+|+|+..+... +...+.+++.|+ +|..+.+..+...+ .+...+.+...|+|+|+-.+..+-. +.+..
T Consensus 56 ~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~--~~~~~~~l~~ad~I~v~GGnt~~l~-~~l~~ 130 (291)
T 3en0_A 56 DAIIGIIPSASREPLLIGERYQTIFSDMGVKELKVLDIRDRAQGD--DSGYRLFVEQCTGIFMTGGDQLRLC-GLLAD 130 (291)
T ss_dssp GCEEEEECTTCSSHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGG--CHHHHHHHHHCSEEEECCSCHHHHH-HHHTT
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCCeeEEEEecCccccC--CHHHHHHHhcCCEEEECCCCHHHHH-HHHHh
Confidence 3688888655432 456788888998 77777775543222 2234444568999999999887644 44443
No 475
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=28.86 E-value=1.5e+02 Score=20.64 Aligned_cols=109 Identities=10% Similarity=0.115 Sum_probs=61.5
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEe----CHHHHHHHHHHHHHc
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIIT----SPEAGSVFLEAWKEA 124 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFT----S~~av~~~~~~l~~~ 124 (286)
+.+||+.-... ....+...|+..|+.+... .+.......+. ...+|.|+.- ..++.+ +++.+.+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~--------~~~~~~~~~~~-~~~~dlvi~D~~l~~~~g~~-~~~~l~~~ 72 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMH--------QSAEAFLAFAP-DVRNGVLVTDLRMPDMSGVE-LLRNLGDL 72 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEE--------SCHHHHHHHGG-GCCSEEEEEECCSTTSCHHH-HHHHHHHT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEe--------CCHHHHHHHHh-cCCCCEEEEECCCCCCCHHH-HHHHHHhc
Confidence 46788887654 3467778888888765321 12233444453 3467877763 234554 45666654
Q ss_pred CCCCcEEEEE-ChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 125 GTPNVRIGVV-GAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 125 ~~~~~~i~aV-G~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
. ...+++++ +........+.++. |.. ++..+..+.+.|...+..
T Consensus 73 ~-~~~~ii~~s~~~~~~~~~~~~~~---ga~-~~l~Kp~~~~~l~~~i~~ 117 (126)
T 1dbw_A 73 K-INIPSIVITGHGDVPMAVEAMKA---GAV-DFIEKPFEDTVIIEAIER 117 (126)
T ss_dssp T-CCCCEEEEECTTCHHHHHHHHHT---TCS-EEEESSCCHHHHHHHHHH
T ss_pred C-CCCCEEEEECCCCHHHHHHHHHh---CHH-HheeCCCCHHHHHHHHHH
Confidence 3 35555554 44443333333222 654 466677788888777754
No 476
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=28.77 E-value=2.5e+02 Score=23.89 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=19.2
Q ss_pred CCCEEEEEcCCCChhHHHHHHHhCCCeeEEEEe
Q 023179 177 KKCTVLYPASAKASNEIEEGLSNRGFEVVRLNT 209 (286)
Q Consensus 177 ~~~rvL~~~g~~~~~~L~~~L~~~G~~V~~~~v 209 (286)
+|.+|+++...-....+...++..|+++..+++
T Consensus 94 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 126 (386)
T 2dr1_A 94 KGGKVLVTIIGAFGKRYKEVVESNGRKAVVLEY 126 (386)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCeEEEEcCCchhHHHHHHHHHhCCceEEEec
Confidence 456777776544332355566667777665554
No 477
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=28.71 E-value=1.1e+02 Score=27.46 Aligned_cols=74 Identities=14% Similarity=0.058 Sum_probs=42.4
Q ss_pred CCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEE------------eeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHH
Q 023179 50 NPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQ------------HAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVF 117 (286)
Q Consensus 50 g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~------------~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~ 117 (286)
.++|||.-....+..+++.+++.|++++.+-... ..+..|.+.+.+..+ ...+|.|+..+-.....+
T Consensus 19 ~~~ili~g~g~~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~-~~~~d~V~~~~e~~~~~~ 97 (433)
T 2dwc_A 19 AQKILLLGSGELGKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVE-REKPDAIIPEIEAINLDA 97 (433)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHTTCEEEEEESSTTCHHHHHSSEEEESCTTCHHHHHHHHH-HHCCSEEEECSSCSCHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhcceEEECCCCCHHHHHHHHH-HcCCCEEEECcccCCHHH
Confidence 4689999665446788999999999987653210 111123344444442 246888887654332233
Q ss_pred HHHHHHc
Q 023179 118 LEAWKEA 124 (286)
Q Consensus 118 ~~~l~~~ 124 (286)
.+.+.+.
T Consensus 98 ~~~l~~~ 104 (433)
T 2dwc_A 98 LFEFEKD 104 (433)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 4444443
No 478
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=28.68 E-value=48 Score=25.87 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=25.5
Q ss_pred CCCccEEEEeCHH-H-------HHHHHHHHHHcCCCCcEEEEECh
Q 023179 100 DTIFDWIIITSPE-A-------GSVFLEAWKEAGTPNVRIGVVGA 136 (286)
Q Consensus 100 ~~~~d~IvFTS~~-a-------v~~~~~~l~~~~~~~~~i~aVG~ 136 (286)
+..||.|||-+|. . +..|++.+....+.+.+++++|-
T Consensus 43 l~~~d~ii~g~pt~~~G~~p~~~~~f~~~l~~~~l~gk~vavfg~ 87 (175)
T 1ag9_A 43 LEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGC 87 (175)
T ss_dssp HHTCSEEEEECCEETTTEECHHHHHHHHHHTTCCCTTCEEEEEEE
T ss_pred hhhCCEEEEEEeecCCCcChHHHHHHHhhhhhcccCCCEEEEEEE
Confidence 4579999998887 3 66677766554556667766553
No 479
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=28.67 E-value=59 Score=27.24 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=28.1
Q ss_pred CCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 46 ASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 46 ~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
.++.|++||||-... -+..+++.|.++|++|+.+
T Consensus 10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~ 44 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSV 44 (269)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 577899999998765 3678999999999998753
No 480
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=28.66 E-value=2.2e+02 Score=22.56 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=48.8
Q ss_pred EEEcCCCC----hhHHHHHHHhCCCeeEEEEeeeeecCCCCc--HHHHHH--cCC--CCEEEEeChHHHHHHHHHhcccc
Q 023179 182 LYPASAKA----SNEIEEGLSNRGFEVVRLNTYTTEPVHHVD--QTVLKQ--ALS--IPVVAVASPSAVRSWVNLISDTE 251 (286)
Q Consensus 182 L~~~g~~~----~~~L~~~L~~~G~~V~~~~vY~~~~~~~~~--~~~~~~--~~~--~d~IvftS~sav~~~~~~~~~~~ 251 (286)
+.+.++.+ .+.|.+.|++.|++|..+-+|.....+.+. ..+.+. .+. .-++++-|.-.+--..+-++
T Consensus 24 IaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGTGiG~sIaANKv~--- 100 (166)
T 3s5p_A 24 VAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGTGIGISIAANKMK--- 100 (166)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESSSHHHHHHHHTST---
T ss_pred EEEEECchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCcHHHHHHhhcCC---
Confidence 55666666 445667788999999999998866554432 112221 133 44666666666655554443
Q ss_pred CCCc-eEEEeCHHHHHHHHHcCCCe
Q 023179 252 QWSN-SVACIGETTASAAKRLGLKN 275 (286)
Q Consensus 252 ~~~~-~iv~IG~~Ta~~l~~~G~~~ 275 (286)
++ ...|..+.+|+.+++..--+
T Consensus 101 --GIRAAlc~d~~sA~laR~hNnAN 123 (166)
T 3s5p_A 101 --GIRCALCSTEYDAEMARKHNNAN 123 (166)
T ss_dssp --TCCEEECSSHHHHHHHHHTTCCC
T ss_pred --CeEEEEeCCHHHHHHHHHhCCCc
Confidence 33 35566777777777764433
No 481
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=28.49 E-value=1.3e+02 Score=23.91 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=35.7
Q ss_pred CeEEEeCCCCch-HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHH
Q 023179 51 PKVVVTRERGKN-GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKE 123 (286)
Q Consensus 51 ~~VLitR~~~~~-~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~ 123 (286)
++|+|.--..++ ..+.++|++.|+++..+ .+.+. + ..+|.||+.-+-+.......+..
T Consensus 3 ~~I~iiD~g~~n~~si~~al~~~G~~~~v~--------~~~~~----l---~~~D~lilPG~g~~~~~~~~~~~ 61 (211)
T 4gud_A 3 QNVVIIDTGCANISSVKFAIERLGYAVTIS--------RDPQV----V---LAADKLFLPGVGTASEAMKNLTE 61 (211)
T ss_dssp CCEEEECCCCTTHHHHHHHHHHTTCCEEEE--------CCHHH----H---HHCSEEEECCCSCHHHHHHHHHH
T ss_pred CEEEEEECCCChHHHHHHHHHHCCCEEEEE--------CCHHH----H---hCCCEEEECCCCCHHHHHHHHHh
Confidence 467777654443 67899999999998742 12222 2 34799999775443333343433
No 482
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=28.48 E-value=1.9e+02 Score=21.70 Aligned_cols=71 Identities=11% Similarity=0.046 Sum_probs=40.1
Q ss_pred chHHHHHHHHhCCCcEEEeceEEe-------eeCCCchHHHHHHhcCCCccEEEEeCHHHHHHHHHHHHHcCCCCcEEEE
Q 023179 61 KNGKLIKALAKHRIDCLELPLIQH-------AQGPDTDRLSSVLNADTIFDWIIITSPEAGSVFLEAWKEAGTPNVRIGV 133 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~-------~~~~~~~~l~~~l~~~~~~d~IvFTS~~av~~~~~~l~~~~~~~~~i~a 133 (286)
+...+.+...+.+-.+........ .+..+.++-.+.++.++..|.++..|+.. |.+.+.+. +.+.++
T Consensus 17 GH~~li~~a~~~~~~~~v~v~~~~~~~~~~~~~l~~~~eR~~~l~~~~~vd~v~~~~~~~---f~~~~~~l---~~~~iv 90 (143)
T 3glv_A 17 GHIHYLKESKKLGDELVVVVARDSTARNNGKIPIFDENSRLALISELKVVDRAILGHEGD---MMKTVIEV---KPDIIT 90 (143)
T ss_dssp HHHHHHHHHHTTSSEEEEEECCHHHHHHTTCCCSSCHHHHHHHHTTBTTCSEEEECCTTC---HHHHHHHH---CCSEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcchhhcCCCCCCCHHHHHHHHHhcCCCCEEEEcCchh---HHHHHHhc---CCCEEE
Confidence 456777777777654433222211 11112222223454555689999988875 55545443 678889
Q ss_pred EChh
Q 023179 134 VGAG 137 (286)
Q Consensus 134 VG~~ 137 (286)
+|.-
T Consensus 91 ~G~d 94 (143)
T 3glv_A 91 LGYD 94 (143)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 9965
No 483
>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*
Probab=28.45 E-value=1.4e+02 Score=25.75 Aligned_cols=77 Identities=16% Similarity=0.027 Sum_probs=45.7
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEee--eCCCchH---HHHHHhcCCCccEEEEeCHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHA--QGPDTDR---LSSVLNADTIFDWIIITSPEAGSVFLEA 120 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~--~~~~~~~---l~~~l~~~~~~d~IvFTS~~av~~~~~~ 120 (286)
.+.|++||||-... -+..+++.|.++|++|+..-.-... ...+.+. +.+.+.........=+++...++.+++.
T Consensus 6 ~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~ 85 (319)
T 1gz6_A 6 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKT 85 (319)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHH
Confidence 57799999998765 3678999999999988754211000 0001122 2233322232334556888888777776
Q ss_pred HHH
Q 023179 121 WKE 123 (286)
Q Consensus 121 l~~ 123 (286)
+.+
T Consensus 86 ~~~ 88 (319)
T 1gz6_A 86 ALD 88 (319)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 484
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=28.28 E-value=1.3e+02 Score=24.75 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=14.1
Q ss_pred CccEEEEeCHHHHHHHHHHHHHcCC
Q 023179 102 IFDWIIITSPEAGSVFLEAWKEAGT 126 (286)
Q Consensus 102 ~~d~IvFTS~~av~~~~~~l~~~~~ 126 (286)
.+|+|+..+-..+..+++.+.+.|.
T Consensus 184 ~~~ai~~~~d~~A~g~~~al~~~g~ 208 (285)
T 3c3k_A 184 KPDAIFAISDVLAAGAIQALTESGL 208 (285)
T ss_dssp CCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCeEEEECCHHHHHHHHHHHHHcCC
Confidence 4566666665555555555555554
No 485
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}
Probab=28.24 E-value=94 Score=25.77 Aligned_cols=73 Identities=14% Similarity=0.081 Sum_probs=42.6
Q ss_pred CCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcC-CCccEEE--EeCHHHHHHHHHHHH
Q 023179 47 SNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNAD-TIFDWII--ITSPEAGSVFLEAWK 122 (286)
Q Consensus 47 ~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~-~~~d~Iv--FTS~~av~~~~~~l~ 122 (286)
.+.|++||||-.... +..+++.|.++|++|+.+- .. ....+.+.+.++.. ....++. ++++.+++.+++.+.
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~---r~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 106 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWY---NS-HPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQE 106 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEE---SS-SCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe---CC-HHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHH
Confidence 577999999987654 6789999999999876431 11 11123333333211 1222221 367778877776654
Q ss_pred H
Q 023179 123 E 123 (286)
Q Consensus 123 ~ 123 (286)
+
T Consensus 107 ~ 107 (279)
T 3ctm_A 107 K 107 (279)
T ss_dssp H
T ss_pred H
Confidence 3
No 486
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=28.05 E-value=55 Score=28.21 Aligned_cols=60 Identities=13% Similarity=0.201 Sum_probs=41.5
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
.|.+|+++.+. -..+...++..|+++..+|+-. ....|.+.+++.+. .+...|++++++.
T Consensus 107 ~gd~vl~~~~~--~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~i~--~~~~~v~~~~p~n 166 (363)
T 3ffh_A 107 TTTNTVMATPT--FVQYRQNALIEGAEVREIPLLQ-DGEHDLEGMLNAID--EKTTIVWICNPNN 166 (363)
T ss_dssp TTCEEEEEESS--CHHHHHHHHHHTCEEEEEECCT-TSCCCHHHHHHHCC--TTEEEEEEESSCT
T ss_pred CCCEEEEcCCC--hHHHHHHHHHcCCEEEEecCCC-CCCcCHHHHHHhcc--cCCCEEEEeCCCC
Confidence 47889998875 3446677778899999888753 22235567777662 4678888887753
No 487
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2
Probab=28.04 E-value=68 Score=26.79 Aligned_cols=73 Identities=15% Similarity=0.087 Sum_probs=43.0
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHH-hcCCCccEEE----EeCHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVL-NADTIFDWII----ITSPEAGSVFLE 119 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l-~~~~~~d~Iv----FTS~~av~~~~~ 119 (286)
..+.|++||||-.... +..+++.|.++|++|+.+- ... ...+.+.+.+ +..+ .+..+ ++++.+++.+++
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~---r~~-~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~v~~~~~ 91 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVAS---RNL-EEASEAAQKLTEKYG-VETMAFRCDVSNYEEVKKLLE 91 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE---SCH-HHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe---CCH-HHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHH
Confidence 5677999999987653 6789999999999876431 111 0011222222 1111 12222 377888888877
Q ss_pred HHHH
Q 023179 120 AWKE 123 (286)
Q Consensus 120 ~l~~ 123 (286)
.+.+
T Consensus 92 ~~~~ 95 (267)
T 1vl8_A 92 AVKE 95 (267)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
No 488
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*
Probab=27.96 E-value=72 Score=26.33 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=42.8
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEE--EeCHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWII--ITSPEAGSVFLEA 120 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~Iv--FTS~~av~~~~~~ 120 (286)
-.+.|++||||-.... +..+++.|.++|++|+.+- ... ...+.+.+.+.. -....++. ++++.+++.+++.
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~---r~~-~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (263)
T 3ai3_A 3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVA---RQV-DRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVES 78 (263)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEE---SCH-HHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc---CCH-HHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 3467999999987653 6789999999999876431 110 001122222211 11222222 3678888887776
Q ss_pred HHH
Q 023179 121 WKE 123 (286)
Q Consensus 121 l~~ 123 (286)
+.+
T Consensus 79 ~~~ 81 (263)
T 3ai3_A 79 VRS 81 (263)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 489
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=27.95 E-value=40 Score=29.43 Aligned_cols=62 Identities=6% Similarity=0.045 Sum_probs=39.8
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPE 112 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~ 112 (286)
.|.+|+++.+.-......+.++..|+++..+|+-. ....|.+.+++.+.. .....|++++++
T Consensus 92 ~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~~d~~~l~~~l~~-~~~~~v~~~~~~ 153 (396)
T 2ch1_A 92 EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPP-DRPFSLETLARAIEL-HQPKCLFLTHGD 153 (396)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCEEEEEECCT-TSCCCHHHHHHHHHH-HCCSEEEEESEE
T ss_pred CCCeEEEEcCCcccHHHHHHHHHcCCceEEecCCC-CCCCCHHHHHHHHHh-CCCCEEEEECCC
Confidence 47789999876433333356677899998888632 112345677777632 146788888764
No 490
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=27.88 E-value=87 Score=26.93 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCC------hhHHHHHHHhCC-CeeEEEEeeeeecC-CCCcHHHHHHcCCCCEEEEeC------hHHHHHH
Q 023179 178 KCTVLYPASAKA------SNEIEEGLSNRG-FEVVRLNTYTTEPV-HHVDQTVLKQALSIPVVAVAS------PSAVRSW 243 (286)
Q Consensus 178 ~~rvL~~~g~~~------~~~L~~~L~~~G-~~V~~~~vY~~~~~-~~~~~~~~~~~~~~d~IvftS------~sav~~~ 243 (286)
..|||++.|... ...|.+.|++.| ++|+...-...-.. +... ..+.++|+||+.. ....++|
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~----~~L~~~D~vV~~~~~~~l~~~~~~~l 79 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV----LDFSPYQLVVLDYNGDSWPEETNRRF 79 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC----CCCTTCSEEEECCCSSCCCHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh----hhhhcCCEEEEeCCCCcCCHHHHHHH
Confidence 358999988543 357888999998 87766543211000 1110 1257899999754 3555666
Q ss_pred HHHhccccCCCceEEEeCH
Q 023179 244 VNLISDTEQWSNSVACIGE 262 (286)
Q Consensus 244 ~~~~~~~~~~~~~iv~IG~ 262 (286)
.+.+.. +..++++..
T Consensus 80 ~~yV~~----Ggglv~~H~ 94 (281)
T 4e5v_A 80 LEYVQN----GGGVVIYHA 94 (281)
T ss_dssp HHHHHT----TCEEEEEGG
T ss_pred HHHHHc----CCCEEEEec
Confidence 666654 456666654
No 491
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Probab=27.87 E-value=68 Score=25.96 Aligned_cols=74 Identities=9% Similarity=-0.005 Sum_probs=42.4
Q ss_pred CCCCCCeEEEeCCCCc-hHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc--CCCccEEE--EeCHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERGK-NGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA--DTIFDWII--ITSPEAGSVFLEA 120 (286)
Q Consensus 46 ~~l~g~~VLitR~~~~-~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~--~~~~d~Iv--FTS~~av~~~~~~ 120 (286)
..+.|++||||-..+. +..+++.|.++|++|..+- ... ...+.+.+.+.. -.....+. ++++.+++.+++.
T Consensus 3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~---r~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (248)
T 2pnf_A 3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITG---TSG-ERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEE 78 (248)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE---SSH-HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe---CCh-HHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHH
Confidence 4577999999977653 6789999999998876431 110 001122222211 11222221 3678888877776
Q ss_pred HHH
Q 023179 121 WKE 123 (286)
Q Consensus 121 l~~ 123 (286)
+.+
T Consensus 79 ~~~ 81 (248)
T 2pnf_A 79 IYN 81 (248)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 492
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=27.85 E-value=54 Score=25.80 Aligned_cols=50 Identities=10% Similarity=0.037 Sum_probs=32.9
Q ss_pred chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhc-CC--CccEEEEeCHHHH
Q 023179 61 KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNA-DT--IFDWIIITSPEAG 114 (286)
Q Consensus 61 ~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~-~~--~~d~IvFTS~~av 114 (286)
....+.+.|++.|+++.... +.+ .|.+.+.+.++. .. .+|.||.|-..++
T Consensus 32 n~~~l~~~L~~~G~~v~~~~---iv~-Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 84 (169)
T 1y5e_A 32 SGQLLHELLKEAGHKVTSYE---IVK-DDKESIQQAVLAGYHKEDVDVVLTNGGTGI 84 (169)
T ss_dssp HHHHHHHHHHHHTCEEEEEE---EEC-SSHHHHHHHHHHHHTCTTCSEEEEECCCSS
T ss_pred hHHHHHHHHHHCCCeEeEEE---EeC-CCHHHHHHHHHHHHhcCCCCEEEEcCCCCC
Confidence 34688999999999887543 222 234556666544 23 7899988866554
No 493
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=27.84 E-value=65 Score=26.56 Aligned_cols=60 Identities=13% Similarity=-0.005 Sum_probs=30.6
Q ss_pred HHHHHHHhCCCcEEEeceEEeeeCCC--chHHHHHHhc-CCCccEEEEeCHHHHHHHHHHHHHcCC
Q 023179 64 KLIKALAKHRIDCLELPLIQHAQGPD--TDRLSSVLNA-DTIFDWIIITSPEAGSVFLEAWKEAGT 126 (286)
Q Consensus 64 ~l~~~L~~~G~~v~~~P~~~~~~~~~--~~~l~~~l~~-~~~~d~IvFTS~~av~~~~~~l~~~~~ 126 (286)
-+.+.|+++|..+. .+......+ .+.+.+.++. ...+|+|+.++-..+..+++.+.+.|.
T Consensus 139 gf~~~l~~~g~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 201 (277)
T 3cs3_A 139 VSTRELTRFGIPYE---IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAFNDEMAIGVYKYVAETNY 201 (277)
T ss_dssp HHHHHHHHTTCCEE---EEECCSSHHHHHHHHHHHTTSCCCSSEEEEESSHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHcCCCee---EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEcChHHHHHHHHHHHHcCC
Confidence 34556667776654 111111000 1223344433 345677777776666666676666654
No 494
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=27.83 E-value=57 Score=27.06 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=45.8
Q ss_pred CCCCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE----EeCHHHHHHHHH
Q 023179 45 SASNSNPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII----ITSPEAGSVFLE 119 (286)
Q Consensus 45 ~~~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv----FTS~~av~~~~~ 119 (286)
...+.|+++|||-... -...+++.|.++|++|+.+-. .. ...+.+.+.+.... .+..+ +++..+++.+++
T Consensus 7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r---~~-~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~ 81 (256)
T 3gaf_A 7 PFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDL---KS-EGAEAVAAAIRQAG-GKAIGLECNVTDEQHREAVIK 81 (256)
T ss_dssp TTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEES---SH-HHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeC---CH-HHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHH
Confidence 3568899999998765 367899999999998764321 10 01122333332221 22222 368888888887
Q ss_pred HHHHc
Q 023179 120 AWKEA 124 (286)
Q Consensus 120 ~l~~~ 124 (286)
.+.+.
T Consensus 82 ~~~~~ 86 (256)
T 3gaf_A 82 AALDQ 86 (256)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 495
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=27.83 E-value=1.2e+02 Score=21.97 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=32.5
Q ss_pred CCCCCeEEEeCCCCch------HHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 47 SNSNPKVVVTRERGKN------GKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 47 ~l~g~~VLitR~~~~~------~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
....++||+.++.+-+ .++.+.+.+.|+++. ++.....+.+ . ...++|.|+.|.+-.
T Consensus 18 ~~~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~----V~~~~~~~~~---~---~~~~~DlIist~~l~ 80 (113)
T 1tvm_A 18 QGSKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVE----LIQCRVNEIE---T---YMDGVHLICTTARVD 80 (113)
T ss_dssp SCSSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEE----EEEECTTTTT---T---STTSCSEEEESSCCC
T ss_pred cccccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEE----EEEecHHHHh---h---ccCCCCEEEECCccc
Confidence 3345789999887743 445567778888742 1222222211 1 235789777776543
No 496
>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*
Probab=27.80 E-value=77 Score=26.92 Aligned_cols=75 Identities=8% Similarity=-0.044 Sum_probs=45.2
Q ss_pred CCCCCCeEEEeCCCC---chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEE--EeCHHHHHHHHHH
Q 023179 46 ASNSNPKVVVTRERG---KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWII--ITSPEAGSVFLEA 120 (286)
Q Consensus 46 ~~l~g~~VLitR~~~---~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~Iv--FTS~~av~~~~~~ 120 (286)
..+.|++||||-... -...+++.|.++|++|+.. .+... ..+.+.+.........++. +++..+++.+++.
T Consensus 27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~--~r~~~--~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 102 (293)
T 3grk_A 27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFT--YQGDA--LKKRVEPLAEELGAFVAGHCDVADAASIDAVFET 102 (293)
T ss_dssp CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEE--ECSHH--HHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEE--cCCHH--HHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHH
Confidence 457899999998652 4678999999999987643 11110 0122222222222222221 4788899988887
Q ss_pred HHHc
Q 023179 121 WKEA 124 (286)
Q Consensus 121 l~~~ 124 (286)
+.+.
T Consensus 103 ~~~~ 106 (293)
T 3grk_A 103 LEKK 106 (293)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 497
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=27.71 E-value=26 Score=27.86 Aligned_cols=55 Identities=24% Similarity=0.265 Sum_probs=35.1
Q ss_pred HHHHHHHhCCCeeEEEEeeeeec----------CC--CCcHHHHHHcCCCCEEEEeCh-------HHHHHHHHHh
Q 023179 192 EIEEGLSNRGFEVVRLNTYTTEP----------VH--HVDQTVLKQALSIPVVAVASP-------SAVRSWVNLI 247 (286)
Q Consensus 192 ~L~~~L~~~G~~V~~~~vY~~~~----------~~--~~~~~~~~~~~~~d~IvftS~-------sav~~~~~~~ 247 (286)
.+.+.|++.|++|+.+.+++..+ .+ ..... .+.+...|.|+|.|| ..++.|++.+
T Consensus 23 ~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~-~~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~ 96 (199)
T 2zki_A 23 EIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVT-LDDMRWADGFAIGSPTRYGNMAGGLKTFLDTT 96 (199)
T ss_dssp HHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCC-HHHHHHCSEEEEEEECBTTBCCHHHHHHHHTT
T ss_pred HHHHHHHhCCCEEEEEehhHhCChhhhhccCCCccccccccc-HHHHHhCCEEEEECCccccCccHHHHHHHHHh
Confidence 45566777788888887776500 00 00111 233457899999885 6789999886
No 498
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=27.68 E-value=1.7e+02 Score=20.88 Aligned_cols=110 Identities=8% Similarity=0.049 Sum_probs=63.1
Q ss_pred CCeEEEeCCCC-chHHHHHHHHhCCCcEEEeceEEeeeCCCchHHHHHHhcCCCccEEEEeC----HHHHHHHHHHHHHc
Q 023179 50 NPKVVVTRERG-KNGKLIKALAKHRIDCLELPLIQHAQGPDTDRLSSVLNADTIFDWIIITS----PEAGSVFLEAWKEA 124 (286)
Q Consensus 50 g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~P~~~~~~~~~~~~l~~~l~~~~~~d~IvFTS----~~av~~~~~~l~~~ 124 (286)
..+|||.-... ....+...|++.|+++... .+.++..+.+. ...+|.|+.-- .++.+ +++.+++.
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~--------~~~~~al~~~~-~~~~dlvl~D~~lp~~~g~~-~~~~lr~~ 73 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRA--------ASGEEALQQIY-KNLPDALICDVLLPGIDGYT-LCKRVRQH 73 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE--------SSHHHHHHHHH-HSCCSEEEEESCCSSSCHHH-HHHHHHHS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEe--------CCHHHHHHHHH-hCCCCEEEEeCCCCCCCHHH-HHHHHHcC
Confidence 46899987764 3567788888888766421 12233334442 35688887742 34555 45556553
Q ss_pred C-CCCcEEEE-EChhhHHHHHHhhhccCCCCceeccCCCCCHHHHHHhccc
Q 023179 125 G-TPNVRIGV-VGAGTASIFEEVIQSSKCSLDVAFSPSKATGKILASELPK 173 (286)
Q Consensus 125 ~-~~~~~i~a-VG~~Ta~~L~~~~~~~~~G~~~~~~~~~~~~e~L~~~L~~ 173 (286)
. ...+++++ .|........+.++. |.. ++..+..+.+.|...+..
T Consensus 74 ~~~~~~pii~~t~~~~~~~~~~~~~~---ga~-~~l~KP~~~~~L~~~i~~ 120 (136)
T 3t6k_A 74 PLTKTLPILMLTAQGDISAKIAGFEA---GAN-DYLAKPFEPQELVYRVKN 120 (136)
T ss_dssp GGGTTCCEEEEECTTCHHHHHHHHHH---TCS-EEEETTCCHHHHHHHHHH
T ss_pred CCcCCccEEEEecCCCHHHHHHHHhc---Ccc-eEEeCCCCHHHHHHHHHH
Confidence 2 23555554 444443333322222 654 466677888888877754
No 499
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=27.68 E-value=1.4e+02 Score=25.52 Aligned_cols=61 Identities=15% Similarity=0.187 Sum_probs=42.7
Q ss_pred CCCeEEEeCCCCchHHHHHHHHhCCCcEEEeceEEee--eCCCchHHHHHHhcCCCccEEEEeCHHH
Q 023179 49 SNPKVVVTRERGKNGKLIKALAKHRIDCLELPLIQHA--QGPDTDRLSSVLNADTIFDWIIITSPEA 113 (286)
Q Consensus 49 ~g~~VLitR~~~~~~~l~~~L~~~G~~v~~~P~~~~~--~~~~~~~l~~~l~~~~~~d~IvFTS~~a 113 (286)
.|.+|++..+.- ..+...++..|+++..+|+-... ...|.+.+++.+ ..+...|++++++.
T Consensus 105 ~gd~vl~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l--~~~~~~v~i~~p~n 167 (383)
T 3kax_A 105 ENESVLVQPPIY--PPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQF--QQGVKLMLLCSPHN 167 (383)
T ss_dssp TTCEEEECSSCC--HHHHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHH--TTTCCEEEEESSBT
T ss_pred CCCEEEEcCCCc--HHHHHHHHHcCCEEEeccceecCCcEEEcHHHHHHHh--CcCCeEEEEeCCCC
Confidence 477899888763 44556778899999999986431 113567787777 34678888887754
No 500
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}
Probab=27.66 E-value=61 Score=27.27 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=25.4
Q ss_pred CCCCCeEEEeCCCC-chHHHHHHHHhCCCcEEEe
Q 023179 47 SNSNPKVVVTRERG-KNGKLIKALAKHRIDCLEL 79 (286)
Q Consensus 47 ~l~g~~VLitR~~~-~~~~l~~~L~~~G~~v~~~ 79 (286)
.+.+++||||-..+ -+..+++.|.++|.+|.-+
T Consensus 4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 37 (321)
T 3vps_A 4 NTLKHRILITGGAGFIGGHLARALVASGEEVTVL 37 (321)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCeEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 45689999998876 4678999999999988765
Done!