Query 023180
Match_columns 286
No_of_seqs 204 out of 1295
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 09:01:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 4.3E-56 9.4E-61 411.5 23.9 220 61-284 33-256 (310)
2 KOG1591 Prolyl 4-hydroxylase a 100.0 1.8E-51 3.9E-56 376.5 15.6 202 68-284 81-288 (289)
3 smart00702 P4Hc Prolyl 4-hydro 100.0 1.3E-36 2.8E-41 261.0 18.1 175 82-279 1-178 (178)
4 PRK05467 Fe(II)-dependent oxyg 100.0 2.4E-28 5.1E-33 217.2 15.2 169 84-285 2-183 (226)
5 PHA02813 hypothetical protein; 99.7 4.2E-17 9.2E-22 151.1 12.9 137 106-275 35-177 (354)
6 PHA02869 C4L/C10L-like gene fa 99.7 4.6E-17 1E-21 152.8 11.7 136 107-277 45-188 (418)
7 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.6 4.7E-16 1E-20 121.0 7.1 91 165-279 1-100 (100)
8 COG3128 PiuC Uncharacterized i 99.6 3.3E-14 7E-19 121.1 10.7 169 82-284 2-185 (229)
9 KOG3710 EGL-Nine (EGLN) protei 98.9 1.8E-08 3.9E-13 88.7 12.4 169 83-281 54-240 (280)
10 PF03336 Pox_C4_C10: Poxvirus 98.6 3.7E-07 8.1E-12 85.0 11.5 124 124-275 38-164 (339)
11 PF13661 2OG-FeII_Oxy_4: 2OG-F 98.5 1.5E-07 3.2E-12 69.0 5.3 53 161-217 9-65 (70)
12 PF03171 2OG-FeII_Oxy: 2OG-Fe( 98.5 1.4E-07 3E-12 72.8 3.7 90 163-279 2-97 (98)
13 COG3751 EGL-9 Predicted prolin 98.1 5.4E-05 1.2E-09 68.5 12.0 101 164-282 137-242 (252)
14 PHA02866 Hypothetical protein; 97.9 4.6E-05 1E-09 69.8 8.3 129 107-275 32-164 (333)
15 TIGR02408 ectoine_ThpD ectoine 97.9 0.00031 6.6E-09 64.7 13.5 181 81-276 27-245 (277)
16 PF05721 PhyH: Phytanoyl-CoA d 97.5 0.00068 1.5E-08 57.7 9.0 167 83-268 5-205 (211)
17 PF13759 2OG-FeII_Oxy_5: Putat 97.4 0.00053 1.2E-08 53.4 7.1 89 166-274 3-98 (101)
18 PF09859 Oxygenase-NA: Oxygena 97.4 0.00062 1.3E-08 57.6 7.7 101 165-280 64-172 (173)
19 TIGR02466 conserved hypothetic 97.2 0.0044 9.6E-08 54.6 11.0 93 162-274 95-194 (201)
20 KOG3844 Predicted component of 97.1 0.004 8.7E-08 59.4 10.5 164 85-282 39-219 (476)
21 TIGR01762 chlorin-enz chlorina 97.0 0.016 3.6E-07 53.7 13.6 182 82-281 14-250 (288)
22 PF13532 2OG-FeII_Oxy_2: 2OG-F 97.0 0.0072 1.6E-07 52.0 10.1 157 84-269 2-177 (194)
23 PF12851 Tet_JBP: Oxygenase do 96.1 0.023 5E-07 48.8 7.1 80 174-279 85-170 (171)
24 PHA02923 hypothetical protein; 95.7 0.054 1.2E-06 50.1 8.3 97 142-276 44-142 (315)
25 PRK15401 alpha-ketoglutarate-d 95.5 0.83 1.8E-05 40.6 15.0 161 80-269 16-196 (213)
26 KOG3200 Uncharacterized conser 92.6 0.41 8.8E-06 41.3 6.5 96 77-183 7-108 (224)
27 COG3826 Uncharacterized protei 89.6 1.6 3.4E-05 38.0 7.1 103 164-281 125-235 (236)
28 PLN02485 oxidoreductase 87.2 4.3 9.2E-05 38.2 9.3 89 164-280 185-287 (329)
29 PF06822 DUF1235: Protein of u 87.1 3.4 7.3E-05 37.9 8.1 104 139-276 30-133 (266)
30 PLN03001 oxidoreductase, 2OG-F 86.7 7.3 0.00016 35.6 10.2 107 143-279 88-212 (262)
31 COG4340 Uncharacterized protei 83.2 1.1 2.4E-05 39.0 2.9 51 200-268 149-201 (226)
32 PLN00417 oxidoreductase, 2OG-F 83.1 10 0.00022 36.1 9.8 87 164-279 204-300 (348)
33 PLN02984 oxidoreductase, 2OG-F 82.9 14 0.0003 35.2 10.5 87 164-280 201-298 (341)
34 PLN02904 oxidoreductase 81.8 13 0.00029 35.4 10.1 86 164-279 209-304 (357)
35 PHA02985 hypothetical protein; 81.2 6.4 0.00014 36.0 7.1 102 138-275 36-137 (271)
36 PLN02216 protein SRG1 80.6 13 0.00028 35.5 9.6 87 164-279 211-307 (357)
37 PLN02639 oxidoreductase, 2OG-F 80.3 18 0.00038 34.2 10.3 89 163-280 190-288 (337)
38 COG3145 AlkB Alkylated DNA rep 79.6 42 0.00092 29.4 11.6 84 144-247 87-170 (194)
39 PLN02365 2-oxoglutarate-depend 79.4 13 0.00029 34.5 9.0 108 145-279 126-248 (300)
40 KOG0143 Iron/ascorbate family 78.8 18 0.0004 34.0 9.8 87 164-278 177-273 (322)
41 PLN02750 oxidoreductase, 2OG-F 78.7 20 0.00044 34.0 10.1 90 163-280 193-292 (345)
42 PLN02947 oxidoreductase 76.8 26 0.00057 33.7 10.4 86 164-279 226-321 (374)
43 PLN02515 naringenin,2-oxogluta 76.0 27 0.00058 33.4 10.2 89 164-280 196-294 (358)
44 PLN02299 1-aminocyclopropane-1 76.0 20 0.00042 33.8 9.1 87 164-279 159-255 (321)
45 PLN02758 oxidoreductase, 2OG-F 75.6 34 0.00075 32.7 10.9 87 164-279 212-309 (361)
46 PLN02997 flavonol synthase 75.3 16 0.00034 34.5 8.3 87 164-280 184-280 (325)
47 PLN02403 aminocyclopropanecarb 74.9 15 0.00033 34.2 8.1 86 165-280 155-252 (303)
48 PLN02254 gibberellin 3-beta-di 74.9 29 0.00063 33.2 10.1 87 164-279 211-307 (358)
49 PF02668 TauD: Taurine catabol 74.6 3.3 7.1E-05 36.5 3.4 38 232-277 219-258 (258)
50 PLN02912 oxidoreductase, 2OG-F 74.4 23 0.0005 33.7 9.3 88 163-280 197-294 (348)
51 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 74.1 3.8 8.2E-05 35.8 3.6 98 142-268 71-179 (195)
52 PLN02276 gibberellin 20-oxidas 71.8 43 0.00094 32.0 10.5 87 163-279 206-302 (361)
53 COG5285 Protein involved in bi 69.7 16 0.00034 34.1 6.6 85 175-272 132-222 (299)
54 PTZ00273 oxidase reductase; Pr 69.1 61 0.0013 30.2 10.7 86 164-279 178-274 (320)
55 PLN02393 leucoanthocyanidin di 68.7 50 0.0011 31.6 10.2 88 164-280 214-311 (362)
56 PLN02704 flavonol synthase 65.3 25 0.00055 33.2 7.4 87 164-280 200-296 (335)
57 cd00250 CAS_like Clavaminic ac 64.0 8.8 0.00019 34.5 3.9 40 232-279 218-260 (262)
58 PF13334 DUF4094: Domain of un 63.6 5.3 0.00011 31.0 2.0 18 16-33 4-21 (95)
59 COG3491 PcbC Isopenicillin N s 63.3 37 0.00081 32.0 7.8 90 161-279 172-271 (322)
60 PLN02156 gibberellin 2-beta-di 62.1 92 0.002 29.5 10.5 87 164-279 179-277 (335)
61 PLN03178 leucoanthocyanidin di 60.1 72 0.0016 30.4 9.5 85 164-280 212-308 (360)
62 KOG3959 2-Oxoglutarate- and ir 58.5 10 0.00022 34.4 3.1 97 81-184 71-175 (306)
63 PF14033 DUF4246: Protein of u 58.4 38 0.00083 34.0 7.5 93 169-280 359-478 (501)
64 TIGR00568 alkb DNA alkylation 54.2 24 0.00051 30.2 4.6 86 142-247 74-159 (169)
65 PF03511 Fanconi_A: Fanconi an 52.2 10 0.00023 27.0 1.7 20 19-38 5-25 (64)
66 PF04650 YSIRK_signal: YSIRK t 46.7 14 0.0003 22.0 1.4 25 1-25 1-27 (27)
67 KOG4459 Membrane-associated pr 44.0 4.6 0.0001 39.7 -1.4 70 193-279 364-433 (471)
68 cd03528 Rieske_RO_ferredoxin R 43.4 43 0.00094 25.0 4.2 48 200-269 4-51 (98)
69 PLN03002 oxidoreductase, 2OG-F 42.7 1.3E+02 0.0027 28.4 8.0 90 164-279 183-283 (332)
70 PRK13254 cytochrome c-type bio 41.7 19 0.00042 30.2 2.1 34 1-34 1-34 (148)
71 PLN03193 beta-1,3-galactosyltr 38.2 30 0.00065 33.8 3.1 35 1-35 1-39 (408)
72 PRK09965 3-phenylpropionate di 36.3 59 0.0013 25.0 4.0 49 198-269 4-52 (106)
73 cd03474 Rieske_T4moC Toluene-4 33.6 84 0.0018 24.0 4.5 47 202-269 6-52 (108)
74 TIGR02410 carnitine_TMLD trime 33.6 46 0.00099 31.7 3.6 38 233-279 312-349 (362)
75 PF03100 CcmE: CcmE; InterPro 31.3 17 0.00037 29.6 0.2 32 1-33 1-32 (131)
76 cd03530 Rieske_NirD_small_Baci 31.2 87 0.0019 23.4 4.1 48 201-269 5-52 (98)
77 PF12273 RCR: Chitin synthesis 30.2 42 0.0009 27.1 2.3 18 14-31 4-21 (130)
78 PF05399 EVI2A: Ectropic viral 29.3 28 0.0006 31.0 1.1 25 12-36 135-159 (227)
79 TIGR02409 carnitine_bodg gamma 28.6 62 0.0013 30.8 3.5 39 233-279 313-353 (366)
80 KOG1971 Lysyl hydroxylase [Pos 27.7 58 0.0013 31.9 3.1 79 190-279 277-355 (415)
81 PRK09553 tauD taurine dioxygen 27.7 40 0.00086 30.8 2.0 31 178-214 96-126 (277)
82 PF11120 DUF2636: Protein of u 27.2 51 0.0011 23.5 2.0 24 13-36 6-29 (62)
83 PF00355 Rieske: Rieske [2Fe-2 26.2 1.2E+02 0.0026 22.4 4.1 29 233-270 26-54 (97)
84 PF06092 DUF943: Enterobacteri 25.1 50 0.0011 28.0 1.9 27 151-177 67-94 (157)
85 cd03478 Rieske_AIFL_N AIFL (ap 24.8 1.1E+02 0.0023 22.9 3.6 22 239-269 29-50 (95)
86 PF07350 DUF1479: Protein of u 24.3 42 0.00091 32.9 1.5 38 233-279 318-356 (416)
87 PF05293 ASFV_L11L: African sw 23.5 53 0.0012 23.6 1.5 26 11-36 28-53 (78)
88 PF08139 LPAM_1: Prokaryotic m 23.2 77 0.0017 18.5 1.9 13 16-28 10-22 (25)
89 cd04338 Rieske_RO_Alpha_Tic55 22.8 1.5E+02 0.0032 24.0 4.3 65 194-280 15-82 (134)
90 cd03542 Rieske_RO_Alpha_HBDO R 22.7 1.2E+02 0.0027 24.1 3.8 62 199-280 3-67 (123)
91 PRK02655 psbI photosystem II r 22.0 99 0.0021 19.8 2.3 10 35-45 24-33 (38)
92 cd03535 Rieske_RO_Alpha_NDO Ri 21.8 1.2E+02 0.0026 24.0 3.5 53 197-269 3-55 (123)
93 PRK13150 cytochrome c-type bio 21.6 59 0.0013 27.6 1.7 34 1-34 1-34 (159)
94 cd03472 Rieske_RO_Alpha_BPDO_l 21.4 1.2E+02 0.0026 24.4 3.4 66 195-280 7-75 (128)
95 cd08788 CARD_NOD2_2_CARD15 Cas 21.3 40 0.00087 25.4 0.6 14 88-101 26-39 (81)
96 cd04337 Rieske_RO_Alpha_Cao Ca 21.3 1.7E+02 0.0037 23.5 4.3 55 194-269 15-69 (129)
97 cd05568 PTS_IIB_bgl_like PTS_I 21.1 1.5E+02 0.0032 21.1 3.7 34 69-104 50-83 (85)
98 PF06643 DUF1158: Protein of u 20.8 87 0.0019 23.1 2.2 18 13-30 48-65 (82)
99 PF10161 DDDD: Putative mitoch 20.5 26 0.00057 26.2 -0.6 25 9-33 34-58 (79)
100 PF05118 Asp_Arg_Hydrox: Aspar 20.3 4E+02 0.0086 22.2 6.6 78 163-276 80-157 (163)
101 PF08510 PIG-P: PIG-P; InterP 20.2 58 0.0013 26.3 1.3 28 9-36 44-71 (126)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=4.3e-56 Score=411.51 Aligned_cols=220 Identities=38% Similarity=0.700 Sum_probs=188.2
Q ss_pred CCCCCCCCcccccccEEeecCCCEEEecCCCCHHHHHHHHHHHhcCCCcceeeecC-CceeeeecceeeccceeecCCCC
Q 023180 61 PHGETGDASIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQ-GETVESTKGTRTSSGTFISASED 139 (286)
Q Consensus 61 ~~~~~~~~~~~~~p~~~ls~~P~I~~~~nfLs~eEC~~li~~a~~~l~~s~v~~~~-G~~~~~~~~~RtS~~~~l~~~ed 139 (286)
..+..+.+.+....+++|||+|+|++|+||||++||++||+++++++++|+++... |++ ..+.+|||+++|+...++
T Consensus 33 ~~~~~~~~~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~--~~s~~RTS~~~~l~~~~d 110 (310)
T PLN00052 33 VGAVAAAPPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKS--VMSEVRTSSGMFLDKRQD 110 (310)
T ss_pred cccccCCCCcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCcc--ccCCCEEecceeecCCCC
Confidence 34455556666666789999999999999999999999999999999999987643 332 357799999999987665
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCCcceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCC
Q 023180 140 KTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENG 219 (286)
Q Consensus 140 ~~~v~~~I~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~ 219 (286)
+++++|++||++++++|..+.|.+||+||++||+|++|+|++........+++|++|+|+||||+++||||+||....
T Consensus 111 --pvv~~I~~Ria~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP~~~~ 188 (310)
T PLN00052 111 --PVVSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFPNAEG 188 (310)
T ss_pred --HHHHHHHHHHHHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecCCccc
Confidence 599999999999999999999999999999999999999998754333357899999999999999999999998632
Q ss_pred cc-cCCCCCccccc--cEEEecCcccEEEeeecCCCCCCCCCCcccccccccceEEEEEecccccccc
Q 023180 220 IF-LDSGYDYKKCI--GLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQH 284 (286)
Q Consensus 220 ~~-~~~~~~~~~~~--~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~q~ 284 (286)
.. ...+..+.+|. +++|+|++|+||+|+|+++||++|++++|+||||++|+||++|+|||.+...
T Consensus 189 ~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~atkWi~~~~~~ 256 (310)
T PLN00052 189 WENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAPKWIHIRSYE 256 (310)
T ss_pred ccccccccchhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEEEeeeccccc
Confidence 11 11234456664 8999999999999999999999999999999999999999999999998654
No 2
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-51 Score=376.53 Aligned_cols=202 Identities=42% Similarity=0.795 Sum_probs=181.6
Q ss_pred Cccccccc--EEeecCCCEEEecCCCCHHHHHHHHHHHhcCCCcceeeecCCceeeeecceeeccceeecCCCChHHHHH
Q 023180 68 ASIQSIPF--QVLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILE 145 (286)
Q Consensus 68 ~~~~~~p~--~~ls~~P~I~~~~nfLs~eEC~~li~~a~~~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~v~~ 145 (286)
+++.++|+ |++||+|+|++||||+|++||++|+++++++++++++....+........+|+|+++|+..+++ ++++
T Consensus 81 ~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~~--~~~~ 158 (289)
T KOG1591|consen 81 PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPDGAS--PVVS 158 (289)
T ss_pred cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecCCCC--HHHH
Confidence 78888887 5899999999999999999999999999999999999765554444556689999999998544 6999
Q ss_pred HHHHHHHHhhCCCCCCCCcceEEecCCCCccccCccCCCC--C--CCCCCCCceEEEEEEeccCCCCCcceecccCCCcc
Q 023180 146 LIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNP--A--EYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIF 221 (286)
Q Consensus 146 ~I~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~--~--~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~ 221 (286)
+|++||++++++|.++.|.|||+||++||||.+|+|++.+ . ......++|++|+++||+|+++||+|+||..+
T Consensus 159 ~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yls~v~~GG~TvFP~~~--- 235 (289)
T KOG1591|consen 159 RIEQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATVLMYLSDVEQGGETVFPNLG--- 235 (289)
T ss_pred HHHHHHHhccCCCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeEEEEecccCCCCcccCCCCC---
Confidence 9999999999999999999999999999999999999963 1 12346899999999999999999999999843
Q ss_pred cCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccceEEEEEecccccccc
Q 023180 222 LDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQH 284 (286)
Q Consensus 222 ~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~q~ 284 (286)
..++|+|++|+|++|+|+++||+.|+++.|++|||+.|+||++|+|||.++|.
T Consensus 236 ----------~~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~~wi~~~~~~ 288 (289)
T KOG1591|consen 236 ----------MKPAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIATKWIHEKNQE 288 (289)
T ss_pred ----------CcccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeeeeeeeecccc
Confidence 12499999999999999999999999999999999999999999999999986
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=100.00 E-value=1.3e-36 Score=261.01 Aligned_cols=175 Identities=35% Similarity=0.591 Sum_probs=149.7
Q ss_pred CCEEEecCCCCHHHHHHHHHHHhcCCCcceeeecCCceeeeecceeeccceeecCCCChHHHHHHHHHHHHHhhCCC---
Q 023180 82 PRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLP--- 158 (286)
Q Consensus 82 P~I~~~~nfLs~eEC~~li~~a~~~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~Ri~~~~glp--- 158 (286)
|.|++++||||++||++||+++++.+.++.+....+.. ...+++|+|..+|+...+. ++++++|.+||+.+++++
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~-~~~~~~R~~~~~~l~~~~~-~~~~~~l~~~i~~~~~~~~~~ 78 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNP-NHDSKYRQSNGTWLELLKG-DLVIERIRQRLADFLGLLRGL 78 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCc-cccCCCEeecceecCCCCC-CHHHHHHHHHHHHHHCCCchh
Confidence 78999999999999999999999977788876543321 1357799999999987641 258999999999999998
Q ss_pred CCCCCcceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEec
Q 023180 159 QTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKP 238 (286)
Q Consensus 159 ~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P 238 (286)
....|.+|++||++|++|.+|+|...... .++|.+|+++||||+++||+|.||.... .....|+|
T Consensus 79 ~~~~~~~~~~~Y~~g~~~~~H~D~~~~~~----~~~r~~T~~~yLn~~~~GG~~~f~~~~~-----------~~~~~v~P 143 (178)
T smart00702 79 PLSAEDAQVARYGPGGHYGPHVDNFEDDE----NGDRIATFLLYLNDVEEGGELVFPGLGL-----------MVCATVKP 143 (178)
T ss_pred hccCcceEEEEECCCCcccCcCCCCCCCC----CCCeEEEEEEEeccCCcCceEEecCCCC-----------ccceEEeC
Confidence 68899999999999999999999986532 2689999999999999999999997531 13569999
Q ss_pred CcccEEEeeecCCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 239 RRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 239 ~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
++|++|+|+|. +++++|++|||++|+||++++|+|
T Consensus 144 ~~G~~v~f~~~------~~~~~H~v~pv~~G~r~~~~~W~~ 178 (178)
T smart00702 144 KKGDLLFFPSG------RGRSLHGVCPVTRGSRWAITGWIR 178 (178)
T ss_pred CCCcEEEEeCC------CCCccccCCcceeCCEEEEEEEEC
Confidence 99999999874 238999999999999999999986
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.96 E-value=2.4e-28 Score=217.23 Aligned_cols=169 Identities=24% Similarity=0.271 Sum_probs=127.8
Q ss_pred EEEecCCCCHHHHHHHHHHHhc-CCCcceeeecCCceeeeecceeeccceeecCCCChHHHHHHHHHHHHHhh-------
Q 023180 84 ALYFPNFASAEQCQSIIATAKK-RLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARAT------- 155 (286)
Q Consensus 84 I~~~~nfLs~eEC~~li~~a~~-~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~Ri~~~~------- 155 (286)
|++++||||++||+++|+..+. .+.+..+.. |. ..+.+|++.+.-.+ + ++.+.+.++|....
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~ta--G~---~~~~vKnN~ql~~d---~--~~a~~l~~~i~~~L~~~~l~~ 71 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVTA--GA---QAAQVKNNQQLPED---S--PLARELGNLILDALTRNPLFF 71 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcCc--Cc---cchhcccccccCCC---C--HHHHHHHHHHHHHHhcCchhh
Confidence 6899999999999999999976 566554432 32 24667887665322 1 35566666665543
Q ss_pred --CCCCCCCCcceEEecCCCCccccCccCCCCCCCC-CCCCceEEEEEEeccCCC--CCcceecccCCCcccCCCCCccc
Q 023180 156 --MLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYG-PQMSQRLASFLLYLSDVE--EGGETMFPFENGIFLDSGYDYKK 230 (286)
Q Consensus 156 --glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~-~~~~~R~~T~liYLndv~--eGGeT~Fp~~~~~~~~~~~~~~~ 230 (286)
.+|.. ..++++.||.+|++|++|+|++.....+ ....+|.+|+++||||++ +||||+|+...
T Consensus 72 sa~lp~~-i~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~------------ 138 (226)
T PRK05467 72 SAALPRK-IHPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFLSDPDDYDGGELVIEDTY------------ 138 (226)
T ss_pred hhccccc-cccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEeCCCCCCcCCceEEecCC------------
Confidence 23433 3568999999999999999998653211 112356899999999874 89999998642
Q ss_pred cccEEEecCcccEEEeeecCCCCCCCCCCcccccccccceEEEEEeccccccccC
Q 023180 231 CIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQHE 285 (286)
Q Consensus 231 ~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~q~~ 285 (286)
....|+|++|++|+|++ .++|+|+||++|+||+++.|+++...++
T Consensus 139 -g~~~Vkp~aG~~vlfps---------~~lH~v~pVt~G~R~~~~~Wi~S~v~~~ 183 (226)
T PRK05467 139 -GEHRVKLPAGDLVLYPS---------TSLHRVTPVTRGVRVASFFWIQSLVRDD 183 (226)
T ss_pred -CcEEEecCCCeEEEECC---------CCceeeeeccCccEEEEEecHHHHcCCH
Confidence 35789999999999987 7999999999999999999999876543
No 5
>PHA02813 hypothetical protein; Provisional
Probab=99.72 E-value=4.2e-17 Score=151.13 Aligned_cols=137 Identities=20% Similarity=0.273 Sum_probs=104.6
Q ss_pred CCCcceeeec-CCceeeeecceeeccceeecCCCChHHHHHHHHHHHHHhh-CCC----CCCCCcceEEecCCCCccccC
Q 023180 106 RLKPSQLALR-QGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARAT-MLP----QTHGEAFNVLRYEIGQKYDSH 179 (286)
Q Consensus 106 ~l~~s~v~~~-~G~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~Ri~~~~-glp----~~~~E~lqv~rY~~G~~y~~H 179 (286)
.+.+|.+... +|. +...+++|+++++.++.. ..+.++|++.+-+-+ +.+ ...+|+++++||.+||+|.+|
T Consensus 35 ~~~~s~i~~~~~~g-e~l~~~iRnNkrviid~~---~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY~kGq~F~~H 110 (354)
T PHA02813 35 IWEESKVFDHEKGG-EVINTNERQCKQYIIRGL---DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYEKGDFFNNH 110 (354)
T ss_pred CccccceeccccCc-eEEccccccceEEEEcCH---HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEECCCcccCcc
Confidence 5778887763 342 356789999999999743 235555555554333 333 467899999999999999999
Q ss_pred ccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCC
Q 023180 180 YDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTS 259 (286)
Q Consensus 180 ~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~ 259 (286)
.|+..... ...+.+|+|+|||++++||||.|.... .. +|. .|++|+|. ...
T Consensus 111 ~Dg~~~r~----k~~s~~tLLLYLN~~~~GGeT~f~~~~-------------~t-sI~--~g~dlLFd---------h~l 161 (354)
T PHA02813 111 RDFIHFKS----KNCYCYHLVLYLNNTSKGGNTNIHIKD-------------NT-IFS--TKNDVLFD---------KTL 161 (354)
T ss_pred cCCceeec----CCceEEEEEEEEeccCCCCceEEEcCC-------------Cc-eEe--ecceEEEe---------ccc
Confidence 99865431 134899999999999999999998642 12 466 99999995 589
Q ss_pred cccccccccceEEEEE
Q 023180 260 LHGSCPVIKGEKWVAT 275 (286)
Q Consensus 260 lH~g~PV~~G~K~i~~ 275 (286)
.|+|++|.+|.|||+-
T Consensus 162 ~Heg~~V~sG~KyVa~ 177 (354)
T PHA02813 162 NHSSDIITDGEKNIAL 177 (354)
T ss_pred ccCCcEeccCeEEEEE
Confidence 9999999999999884
No 6
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.71 E-value=4.6e-17 Score=152.77 Aligned_cols=136 Identities=24% Similarity=0.239 Sum_probs=105.3
Q ss_pred CCcceeeec-CCceeeeecceeeccceeecCCCChHHHHHHHHHHHHHh-----hCC--CCCCCCcceEEecCCCCcccc
Q 023180 107 LKPSQLALR-QGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARA-----TML--PQTHGEAFNVLRYEIGQKYDS 178 (286)
Q Consensus 107 l~~s~v~~~-~G~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~Ri~~~-----~gl--p~~~~E~lqv~rY~~G~~y~~ 178 (286)
+.+|.+... +|. +......|+|.+..+... +.+.|.+||+.+ -++ ..+.+|+++++||.+||+|++
T Consensus 45 ~~~s~i~~~~~g~-e~~~~~~~ksKqii~e~~-----La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~ 118 (418)
T PHA02869 45 CEDSKIFFPEKRT-ELLSIKDRKSKQIVFENS-----LNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFAR 118 (418)
T ss_pred cccceeeccccCc-eeEeeccccceeEEechH-----HHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCcccc
Confidence 567777653 332 334556799998888632 555666666554 243 456799999999999999999
Q ss_pred CccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCC
Q 023180 179 HYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRT 258 (286)
Q Consensus 179 H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~ 258 (286)
|.|+.... ......+|+|+|||++++||||.|+.. ...+|.|++| |+|. ..
T Consensus 119 H~Dg~~~r----s~e~s~~tLLLYLNd~~~GGET~f~~~--------------~~~sI~pksg--LLFd---------h~ 169 (418)
T PHA02869 119 HRDFSTVF----SKNIICVHLLLYLEQPETGGETVIYID--------------NNTSVKLKTD--HLFD---------KT 169 (418)
T ss_pred cccCceec----CCCEEEEEEEEEEeccCCCCceEEEeC--------------CCceEecCCC--eEec---------cc
Confidence 99986543 245678999999999999999999862 3567999999 9994 58
Q ss_pred CcccccccccceEEEEEec
Q 023180 259 SLHGSCPVIKGEKWVATKW 277 (286)
Q Consensus 259 ~lH~g~PV~~G~K~i~~~W 277 (286)
..|+|++|.+|.|||++.=
T Consensus 170 l~Heg~~V~sG~KyVartD 188 (418)
T PHA02869 170 IEHESITVESGRKCVALFD 188 (418)
T ss_pred cccCCcEeecCeEEEEEEE
Confidence 9999999999999999654
No 7
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.64 E-value=4.7e-16 Score=120.95 Aligned_cols=91 Identities=35% Similarity=0.543 Sum_probs=70.1
Q ss_pred ceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCCC---CCcceecccCCCcccCCCCCccccccEEEe----
Q 023180 165 FNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVE---EGGETMFPFENGIFLDSGYDYKKCIGLKVK---- 237 (286)
Q Consensus 165 lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~---eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~---- 237 (286)
.|+.+|.+|++|++|+|... ...+.+|+++|||+.+ +||+|.|.... .. + .....+.
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~-------~~~~~~t~llyL~~~~~~~~GG~l~~~~~~-~~-~-------~~~~~~~~~~~ 64 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY-------DPHRRVTLLLYLNDPEWEFEGGELEFYPSK-DS-D-------DVSREVEDFDI 64 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC-------CCSEEEEEEEESS-CS-HCEE--EEETTTS--T-S-------STCEEEGGGSE
T ss_pred CEEEEECcCCEEeeeECCCC-------CCcceEEEEEEECCCCcccCCCEEEEeccc-cC-C-------CcceEEEeccc
Confidence 47999999999999999864 3578999999999877 99999998642 10 0 0122333
Q ss_pred -cCcccEEEeeecCCCCCCCCCCccccccc-ccceEEEEEeccc
Q 023180 238 -PRRGDGLLFYSLFPNGTIDRTSLHGSCPV-IKGEKWVATKWIR 279 (286)
Q Consensus 238 -P~~G~allF~n~~~~g~~D~~~lH~g~PV-~~G~K~i~~~Wi~ 279 (286)
|+.|++|+|.+ ..++|++.|| ..|.|++++.|++
T Consensus 65 ~p~~g~~v~F~~--------~~~~H~v~~v~~~~~R~~l~~~~~ 100 (100)
T PF13640_consen 65 VPKPGRLVIFPS--------DNSLHGVTPVGEGGRRYSLTFWFH 100 (100)
T ss_dssp E-BTTEEEEEES--------CTCEEEEEEE-EESEEEEEEEEEE
T ss_pred cCCCCEEEEEeC--------CCCeecCcccCCCCCEEEEEEEEC
Confidence 99999999986 4899999999 8999999999985
No 8
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.55 E-value=3.3e-14 Score=121.15 Aligned_cols=169 Identities=25% Similarity=0.294 Sum_probs=113.9
Q ss_pred CCEEEecCCCCHHHHHHHHHHHhc-CCCcceeeecCCceeeeecceeeccceeecCCCChHHHHHHHHHHHHHh------
Q 023180 82 PRALYFPNFASAEQCQSIIATAKK-RLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARA------ 154 (286)
Q Consensus 82 P~I~~~~nfLs~eEC~~li~~a~~-~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~Ri~~~------ 154 (286)
+..+.|+.+||+++|.+|.+..+. .+....... |- ....+|.+.+.-.+ +++...|.+-|.+.
T Consensus 2 ~m~lhIp~VLs~a~va~iRa~l~~A~w~dGrat~--g~---q~a~vk~n~qlp~~-----s~l~~~vg~~il~al~~~pl 71 (229)
T COG3128 2 IMMLHIPEVLSEAQVARIRAALEQAEWVDGRATQ--GP---QGAQVKNNLQLPQD-----SALARELGNEILQALTAHPL 71 (229)
T ss_pred ceEEechhhCCHHHHHHHHHHHhhcccccccccc--Cc---chhhhhccccCCcc-----cHHHHHHHHHHHHHHHhchh
Confidence 345788999999999999887764 232222111 10 11233444333221 12333343333322
Q ss_pred -hC--CCCCCCCcceEEecCCCCccccCccCCCCCCCCCCCCce---EEEEEEeccCCC--CCcceecccCCCcccCCCC
Q 023180 155 -TM--LPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQR---LASFLLYLSDVE--EGGETMFPFENGIFLDSGY 226 (286)
Q Consensus 155 -~g--lp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R---~~T~liYLndv~--eGGeT~Fp~~~~~~~~~~~ 226 (286)
++ +|. ..++.++.||..|+.|.+|.|+..+.. .+..++| .+++-++|+|++ +|||.+.-...
T Consensus 72 ff~aALp~-t~~~P~Fn~Y~eg~~f~fHvDgavr~~-hp~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtY-------- 141 (229)
T COG3128 72 FFAAALPR-TCLPPLFNRYQEGDFFGFHVDGAVRSI-HPGSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTY-------- 141 (229)
T ss_pred HHHhhccc-ccCCchhhhccCCCcccccccCccccc-CCCCCceeEeeeeeeeecCCccccCCceEEEeccc--------
Confidence 22 332 467789999999999999999976541 1222333 567778999985 79999986543
Q ss_pred CccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccceEEEEEecccccccc
Q 023180 227 DYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQEQH 284 (286)
Q Consensus 227 ~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~~q~ 284 (286)
....||-.+|++|+|++ .++|.+.||+.|+++..-.|+++-..+
T Consensus 142 -----g~h~VklPAGdLVlypS---------tSlH~VtPVTRg~R~asffW~qslir~ 185 (229)
T COG3128 142 -----GNHRVKLPAGDLVLYPS---------TSLHEVTPVTRGERFASFFWIQSLIRD 185 (229)
T ss_pred -----cceEEeccCCCEEEccc---------ccceeccccccCceEEEeeehHHHhhh
Confidence 36789989999999997 899999999999999999999875444
No 9
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=98.92 E-value=1.8e-08 Score=88.75 Aligned_cols=169 Identities=22% Similarity=0.281 Sum_probs=113.8
Q ss_pred CEEEecCCCCHHHHHHHHHHHhc-----CCCcceeeecCCceeeeecceeeccceeecCCCChHHH----HHHHHHHHHH
Q 023180 83 RALYFPNFASAEQCQSIIATAKK-----RLKPSQLALRQGETVESTKGTRTSSGTFISASEDKTGI----LELIEHKIAR 153 (286)
Q Consensus 83 ~I~~~~nfLs~eEC~~li~~a~~-----~l~~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~v----~~~I~~Ri~~ 153 (286)
.+.+++|||-.+--..+.+..+. .+.+..++.. + ....+++|.....|+...|..-.. ...|..-+.+
T Consensus 54 g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~--~-~~~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h 130 (280)
T KOG3710|consen 54 GICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSP--D-AFHSKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILH 130 (280)
T ss_pred ceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccC--c-CCcchhhccCCceEecCCCCCccceeeecccchhhhhh
Confidence 57899999998877666655543 4566655542 1 123468999999999876521001 1111111111
Q ss_pred hh---CCCCCCCCcceEEecC-CCCccccCccCCCCCCCCCCCCceEEEEEEeccC---CC-CCcce-ecccCCCcccCC
Q 023180 154 AT---MLPQTHGEAFNVLRYE-IGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSD---VE-EGGET-MFPFENGIFLDS 224 (286)
Q Consensus 154 ~~---glp~~~~E~lqv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLnd---v~-eGGeT-~Fp~~~~~~~~~ 224 (286)
.. +--...-.+-.|+.|. .|-.|-.|+|.- .+-.|..|++.|||. +. .||.+ .||....
T Consensus 131 ~~~r~~~~~~gRtkAMVAcYPGNGtgYVrHVDNP-------~gDGRcITcIYYlNqNWD~kv~Gg~Lri~pe~~~----- 198 (280)
T KOG3710|consen 131 CNGRLGSYIIGRTKAMVACYPGNGTGYVRHVDNP-------HGDGRCITCIYYLNQNWDVKVHGGILRIFPEGST----- 198 (280)
T ss_pred hccccccccccceeEEEEEecCCCceeeEeccCC-------CCCceEEEEEEEcccCcceeeccceeEeccCCCC-----
Confidence 11 1111123445789996 577899999974 356899999999994 32 45544 6776432
Q ss_pred CCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccceEEEEEeccccc
Q 023180 225 GYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRDQ 281 (286)
Q Consensus 225 ~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 281 (286)
.-..|.|+-+.+||||| |.+-.|++.|+.. +||.++.|+-+.
T Consensus 199 -------~~adieP~fdrLlffwS-------drrnPhev~Pa~~-tryaitvwyfda 240 (280)
T KOG3710|consen 199 -------TFADIEPKFDRLLFFWS-------DRRNPHEVQPAYA-TRYAITVWYFDA 240 (280)
T ss_pred -------cccccCcCCCeEEEEEe-------cCCCccccccccc-cceEEEEEEecc
Confidence 24579999999999999 7889999999996 699999998765
No 10
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=98.62 E-value=3.7e-07 Score=85.04 Aligned_cols=124 Identities=23% Similarity=0.296 Sum_probs=91.5
Q ss_pred cceeeccceeecCCCChHHHHHHHHHHHHHhhCC---CCCCCCcceEEecCCCCccccCccCCCCCCCCCCCCceEEEEE
Q 023180 124 KGTRTSSGTFISASEDKTGILELIEHKIARATML---PQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFL 200 (286)
Q Consensus 124 ~~~RtS~~~~l~~~ed~~~v~~~I~~Ri~~~~gl---p~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~l 200 (286)
...|.|++..+.. ++..++.++|++.|..-+.- .....+.+.+.+|++|++|+.|.|..... .......+++
T Consensus 38 ~~~r~sk~iv~~~-~~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~~----~~n~~~y~Lv 112 (339)
T PF03336_consen 38 HEFRKSKQIVIED-SLNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKRD----SKNCLEYHLV 112 (339)
T ss_pred ccccccceEEEec-cchHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhcccceec----cCCceEEEEE
Confidence 3378888876664 34456888888887664321 23457789999999999999999943322 2456789999
Q ss_pred EeccCCCCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccceEEEEE
Q 023180 201 LYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVAT 275 (286)
Q Consensus 201 iYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~ 275 (286)
+||+.+.+||+|.+.-..+ ..-.|.+ ++-++| |....|.+.+|.+|.|+||.
T Consensus 113 LyL~~~~~GGktkiyi~~~------------~~tvI~~--~~DvLF---------dKsl~h~s~~V~~G~K~VAl 164 (339)
T PF03336_consen 113 LYLNNPENGGKTKIYIDPN------------DNTVIST--SEDVLF---------DKSLNHESIIVEEGRKIVAL 164 (339)
T ss_pred EEEeccCCCceEEEEECCC------------Cceeeec--cccEEE---------eccccccceEeccCeEEEEE
Confidence 9999999999999863211 1222544 667888 56899999999999999964
No 11
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=98.54 E-value=1.5e-07 Score=69.00 Aligned_cols=53 Identities=30% Similarity=0.472 Sum_probs=43.8
Q ss_pred CCCcceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEecc----CCCCCcceecccC
Q 023180 161 HGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLS----DVEEGGETMFPFE 217 (286)
Q Consensus 161 ~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLn----dv~eGGeT~Fp~~ 217 (286)
..+.++..+|..|++|++|+|...... ..+|.+|++|||| +..+||++.|...
T Consensus 9 ~~~~~~~~~~~~g~~~~~H~D~~~~~~----~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~ 65 (70)
T PF13661_consen 9 FRPNFRFYRYRRGDFFGWHVDADPSSS----GKRRFLTLLLYLNEDWDEDFGGGELFFDDD 65 (70)
T ss_pred cCcceeEEEcCCCCEeeeeEcCCcccc----ccceeEEEEEEecccccCccCCcEEEEeCC
Confidence 356789999999999999999876532 4789999999999 4567888888764
No 12
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=98.46 E-value=1.4e-07 Score=72.81 Aligned_cols=90 Identities=21% Similarity=0.301 Sum_probs=55.9
Q ss_pred CcceEEecC---CCCccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEecC
Q 023180 163 EAFNVLRYE---IGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPR 239 (286)
Q Consensus 163 E~lqv~rY~---~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~ 239 (286)
+.+++.+|. .+..+.+|+|.. .+++|++++ .++|++.|.... ..+.|+|.
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~----------~~~~Til~~----~~~~gL~~~~~~-------------~~~~v~~~ 54 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE----------DGLLTILFQ----DEVGGLQVRDDG-------------EWVDVPPP 54 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES------------SSEEEEEE----TSTS-EEEEETT-------------EEEE----
T ss_pred CEEEEEECCCcccCCceeCCCcCC----------CCeEEEEec----ccchheeccccc-------------cccCccCc
Confidence 458999999 889999999974 457999999 677889998643 24566666
Q ss_pred cccEEEee-ecCC--CCCCCCCCcccccccccceEEEEEeccc
Q 023180 240 RGDGLLFY-SLFP--NGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 240 ~G~allF~-n~~~--~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
.+..++.. ++.. .+.....++|+++++.+|.||+++.|++
T Consensus 55 ~~~~~v~~G~~l~~~t~g~~~~~~HrV~~~~~~~R~s~~~f~~ 97 (98)
T PF03171_consen 55 PGGFIVNFGDALEILTNGRYPATLHRVVPPTEGERYSLTFFLR 97 (98)
T ss_dssp TTCEEEEEBHHHHHHTTTSS----EEEE--STS-EEEEEEEEE
T ss_pred cceeeeeceeeeecccCCccCCceeeeEcCCCCCEEEEEEEEC
Confidence 65444443 4221 2345678999999999999999999985
No 13
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=5.4e-05 Score=68.50 Aligned_cols=101 Identities=22% Similarity=0.210 Sum_probs=76.2
Q ss_pred cceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCC---CCCcce-ecccCCCcccCCCCCccccccEEEecC
Q 023180 164 AFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDV---EEGGET-MFPFENGIFLDSGYDYKKCIGLKVKPR 239 (286)
Q Consensus 164 ~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv---~eGGeT-~Fp~~~~~~~~~~~~~~~~~~l~V~P~ 239 (286)
+.|+.-|.+|-+|..|-|.+.. ...|.+|.++|+|.. +-||+. .|+..... .. .. ..-..|.|+
T Consensus 137 e~~~~~y~~G~~l~~H~D~~~~------~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~-~~----~~-~~~~ti~P~ 204 (252)
T COG3751 137 EGQITVYNPGCFLLKHDDNGRD------KDIRLATYVYYLTREWKPEYGGELRLFHSLQKN-NT----AA-DSFKTIAPV 204 (252)
T ss_pred eeeeeEecCCceeEeecccCCC------ccceEEEEEeccCCCCCcCCCCceeeccccccc-cc----cc-ccccccCCC
Confidence 4799999999999999998864 468999999999974 679999 77764311 00 00 024579999
Q ss_pred cccEEEeeecCCCCCCCCCCcccccccc-cceEEEEEecccccc
Q 023180 240 RGDGLLFYSLFPNGTIDRTSLHGSCPVI-KGEKWVATKWIRDQE 282 (286)
Q Consensus 240 ~G~allF~n~~~~g~~D~~~lH~g~PV~-~G~K~i~~~Wi~~~~ 282 (286)
-+.+++|.+- -..+.|.+.+|. .+.+..++.|++...
T Consensus 205 fn~lv~F~s~------~~Hs~h~V~~~~~~~~RlsV~GW~r~~~ 242 (252)
T COG3751 205 FNSLVFFKSR------PSHSVHSVEEPYAAADRLSVTGWFRRPG 242 (252)
T ss_pred CceEEEEEec------CCccceeccccccccceEEEeeEEecCC
Confidence 9999999871 113788888764 458999999998653
No 14
>PHA02866 Hypothetical protein; Provisional
Probab=97.90 E-value=4.6e-05 Score=69.84 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=86.7
Q ss_pred CCcceeeec-CCceeeeecceeeccceeecCCCChHHHHHHHHHHHHHhhCCC---CCCCCcceEEecCCCCccccCccC
Q 023180 107 LKPSQLALR-QGETVESTKGTRTSSGTFISASEDKTGILELIEHKIARATMLP---QTHGEAFNVLRYEIGQKYDSHYDA 182 (286)
Q Consensus 107 l~~s~v~~~-~G~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~Ri~~~~glp---~~~~E~lqv~rY~~G~~y~~H~D~ 182 (286)
+.+|.+... .|-. -.....|.|.++ +++.+++. |+.++ .++ .-..+.+.+.+|..|.+|.-|+|-
T Consensus 32 w~~s~i~~~~~~i~-~~~~~~~k~k~~--------~~v~~~v~-~~~~~-~~~~~dv~v~~~~t~vk~~kg~~fdn~~~~ 100 (333)
T PHA02866 32 WEDSDILRHRQFIP-CEILVLEKSERT--------KQVFGAVK-RVLAS-SLTDYDVYVCEHLTIVKCFKGVGFDNRFSI 100 (333)
T ss_pred cchhhhhhhccCCc-eeeeehhhhhhh--------HHHHHHHH-HHHhc-cCCCccEEEeeeEEEEEEecccccccceeE
Confidence 788877642 2211 123345666544 24777766 43332 232 234677899999999999999987
Q ss_pred CCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCccc
Q 023180 183 FNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHG 262 (286)
Q Consensus 183 ~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~ 262 (286)
.... ....+-.++++||+.+.+||+|.++-... -.+.-+ +=++| |.+..|.
T Consensus 101 ~~~~----~~~~~~Y~LvLyL~~p~~GGkt~iyv~~~--------------t~i~~~--~DvLF---------DKsl~h~ 151 (333)
T PHA02866 101 LTED----RHRGREYTLVLHLSSPKNGGKTDVCVGDK--------------TVISTA--DDFLL---------EKRSEQL 151 (333)
T ss_pred EEec----cCCceEEEEEEEEeccccCCceEEEeCCC--------------ceEeec--cceee---------ecccccc
Confidence 5432 23567899999999999999999984321 112222 23666 5789999
Q ss_pred ccccccceEEEEE
Q 023180 263 SCPVIKGEKWVAT 275 (286)
Q Consensus 263 g~PV~~G~K~i~~ 275 (286)
..-|.+|+|.++-
T Consensus 152 S~~V~~G~K~Val 164 (333)
T PHA02866 152 SNVVQEGEKIVVA 164 (333)
T ss_pred ceeeecCcEEEEE
Confidence 9999999998774
No 15
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=97.88 E-value=0.00031 Score=64.68 Aligned_cols=181 Identities=16% Similarity=0.138 Sum_probs=92.7
Q ss_pred CCCEEEecCCCCHHHHHHHHHHHhcCCCcceeeecCCcee--eeecceeeccceeecCCCChHHHH------HHHHHHHH
Q 023180 81 RPRALYFPNFASAEQCQSIIATAKKRLKPSQLALRQGETV--ESTKGTRTSSGTFISASEDKTGIL------ELIEHKIA 152 (286)
Q Consensus 81 ~P~I~~~~nfLs~eEC~~li~~a~~~l~~s~v~~~~G~~~--~~~~~~RtS~~~~l~~~ed~~~v~------~~I~~Ri~ 152 (286)
+-.-+++++||+++||+.|.+..+..+....+. ..+... ......|.....+ ..+ +.+ ..|...++
T Consensus 27 ~dGyvvl~~vls~eev~~lr~~i~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~---~~~--~~~~~l~~~p~l~~~~~ 100 (277)
T TIGR02408 27 RDGFLLLENLFSDDEVAALLAEVERMTRDPAIV-RDEEAITEPGSNAVRSIFEVH---VLS--PILARLVRDPRVANAAR 100 (277)
T ss_pred HCCEEECcccCCHHHHHHHHHHHHHHHhccccc-CCCcceecCCCCceEEEeccc---ccC--HHHHHHHcChHHHHHHH
Confidence 344578999999999999999887633221110 001000 0011222211111 111 122 23444555
Q ss_pred HhhCCCCCCCCcceEEecC-CCCccccCccCCCCCCCCCCCCceEEEEEEeccCCCC-Ccceec-ccCCCccc-------
Q 023180 153 RATMLPQTHGEAFNVLRYE-IGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEE-GGETMF-PFENGIFL------- 222 (286)
Q Consensus 153 ~~~glp~~~~E~lqv~rY~-~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~e-GGeT~F-p~~~~~~~------- 222 (286)
++.|-+.......-+.+.+ .|+.+.||.|.............+.+|+.|+|.|+.+ .|.+.| |-+.....
T Consensus 101 ~LlG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~~~~~~~~ 180 (277)
T TIGR02408 101 QILGSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIALTDNNETNGPLMLVPGSHRTFISCVGETP 180 (277)
T ss_pred HHcCCCeEEEeeeeeecCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEcccCCCCCCCEEEecCCCCCcccCCcccc
Confidence 5666432111111112344 2567889999753211000112368999999999864 377766 54322100
Q ss_pred ----CCCC-----Ccc---------cc-ccEEEecCcccEEEeeecCCCCCCCCCCcccccccccc-eEEEEEe
Q 023180 223 ----DSGY-----DYK---------KC-IGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG-EKWVATK 276 (286)
Q Consensus 223 ----~~~~-----~~~---------~~-~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G-~K~i~~~ 276 (286)
+... +.. +. .-+.+.-++|++|+|. ..++|++-|-... .|+++-.
T Consensus 181 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~---------~~~~H~S~~N~s~~~R~~l~l 245 (277)
T TIGR02408 181 RDNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFD---------CNTMHGSGSNITPWPRSNVFM 245 (277)
T ss_pred chhhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEc---------cccccCCCCCCCCCcceeEEE
Confidence 0000 000 00 1235666999999995 4899999998865 5655543
No 16
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.48 E-value=0.00068 Score=57.66 Aligned_cols=167 Identities=16% Similarity=0.124 Sum_probs=84.6
Q ss_pred CEEEecCCCCHHHHHHHHHHHhcC----CCc-ceeee-cCCceeeeecceeeccceeecCCCCh-HHHH-H-HHHHHHHH
Q 023180 83 RALYFPNFASAEQCQSIIATAKKR----LKP-SQLAL-RQGETVESTKGTRTSSGTFISASEDK-TGIL-E-LIEHKIAR 153 (286)
Q Consensus 83 ~I~~~~nfLs~eEC~~li~~a~~~----l~~-s~v~~-~~G~~~~~~~~~RtS~~~~l~~~ed~-~~v~-~-~I~~Ri~~ 153 (286)
..++++|+|+++||+.|.+..... ..+ ..... ..+. .......++...... ..+. . .+...+.+
T Consensus 5 Gyvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (211)
T PF05721_consen 5 GYVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFDES-------FFGDYTEQLAKSPNFYDLFLHPPRILDLVRA 77 (211)
T ss_dssp SEEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEESTS-------CCCTCCCCGCCCHHHHHHHHTHHHHHHHHHH
T ss_pred cEEEECCcCCHHHHHHHHHHHHHHHhhhhccccccccccccc-------cccccccccccchhhHHHHhhHHHHHHHHHH
Confidence 357899999999999998887642 111 11100 0010 001111111111000 0111 2 46666666
Q ss_pred hhCCCCC----CCCcce-EEecC-CCCcc-ccCccCCCCCCCCCCCCceEEEEEEeccCCC-CCcceec-ccCCCcccC-
Q 023180 154 ATMLPQT----HGEAFN-VLRYE-IGQKY-DSHYDAFNPAEYGPQMSQRLASFLLYLSDVE-EGGETMF-PFENGIFLD- 223 (286)
Q Consensus 154 ~~glp~~----~~E~lq-v~rY~-~G~~y-~~H~D~~~~~~~~~~~~~R~~T~liYLndv~-eGGeT~F-p~~~~~~~~- 223 (286)
+.|-... ....++ +.+-. +|... .||.|...... ....+.+|+.|+|.|+. +.|.+.+ |........
T Consensus 78 ~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~---~~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~~~~ 154 (211)
T PF05721_consen 78 LLGSDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHT---DPPENQLTVWIALDDITPENGPLEVVPGSHKWGVEP 154 (211)
T ss_dssp HHTSSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTE---ESSSCEEEEEEESS-BBTTCTCEEEETTGCCSCCEE
T ss_pred hhCCcchhhhhhHHHHHhhhhccccCCCCCCCCCCCccccc---CCccceEEEEEeeccCCcccCceEeecCCcCCCccc
Confidence 7765421 122221 22322 46665 99999765421 01578999999999984 5566665 433221100
Q ss_pred --CCC---C----------ccccccEEEecCcccEEEeeecCCCCCCCCCCccccccccc
Q 023180 224 --SGY---D----------YKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIK 268 (286)
Q Consensus 224 --~~~---~----------~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~ 268 (286)
... . ......+.+..++|++|||. ..++|++-|-..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~---------~~~~H~s~~N~s 205 (211)
T PF05721_consen 155 HEERFPEEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFH---------SRLIHGSGPNTS 205 (211)
T ss_dssp ECCCCCCCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEE---------TTSEEEEE-B-S
T ss_pred ccccccccccccccccccccccCceEEeecCCCeEEEEc---------CCccccCCCCCC
Confidence 000 0 01124578999999999995 599999998654
No 17
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=97.44 E-value=0.00053 Score=53.41 Aligned_cols=89 Identities=24% Similarity=0.190 Sum_probs=49.1
Q ss_pred eEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCccc-C-CC----CCccccccEEEecC
Q 023180 166 NVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFL-D-SG----YDYKKCIGLKVKPR 239 (286)
Q Consensus 166 qv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~-~-~~----~~~~~~~~l~V~P~ 239 (286)
-+..|.+|++-.+|.- .+..+|.++||+..++.|.+.|........ . .. .....+....++|+
T Consensus 3 W~ni~~~g~~~~~H~H-----------~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 71 (101)
T PF13759_consen 3 WANIYRKGGYNEPHNH-----------PNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPE 71 (101)
T ss_dssp EEEEE-TT--EEEE-------------TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---
T ss_pred eEEEeCCCCccCceEC-----------CCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCC
Confidence 4567889998888852 134799999999888889999975432221 1 00 01122456889999
Q ss_pred cccEEEeeecCCCCCCCCCCcccccccccc-eEEEE
Q 023180 240 RGDGLLFYSLFPNGTIDRTSLHGSCPVIKG-EKWVA 274 (286)
Q Consensus 240 ~G~allF~n~~~~g~~D~~~lH~g~PV~~G-~K~i~ 274 (286)
.|++|||++ .+.|++.|-... .|+++
T Consensus 72 ~G~lvlFPs---------~l~H~v~p~~~~~~Risi 98 (101)
T PF13759_consen 72 EGDLVLFPS---------WLWHGVPPNNSDEERISI 98 (101)
T ss_dssp TTEEEEEET---------TSEEEE----SSS-EEEE
T ss_pred CCEEEEeCC---------CCEEeccCcCCCCCEEEE
Confidence 999999997 899999998864 66665
No 18
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=97.43 E-value=0.00062 Score=57.62 Aligned_cols=101 Identities=24% Similarity=0.317 Sum_probs=73.7
Q ss_pred ceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCC---CCCcceecccCCCcccCCCCCccccccEEEecCcc
Q 023180 165 FNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDV---EEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRG 241 (286)
Q Consensus 165 lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv---~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G 241 (286)
.-+++|++|++=..|.|-.-..-+ -+-+.+-||+. ++|||.+......+. ......+++.+|
T Consensus 64 plllrY~~gdyn~LHqdlyGe~vF-------PlQvv~lLs~Pg~DftGGEFVltEQrPR~--------QSR~~V~~L~qG 128 (173)
T PF09859_consen 64 PLLLRYGPGDYNCLHQDLYGEHVF-------PLQVVILLSEPGEDFTGGEFVLTEQRPRM--------QSRAMVLPLRQG 128 (173)
T ss_pred hhhheeCCCCccccccCCCCCccc-------CeEEEEEcCCCCCcccCceEEEEEecCCc--------cCccccCCcCCC
Confidence 568999999999999886432211 14567779985 589999986543221 124678999999
Q ss_pred cEEEeeec-CC----CCCCCCCCcccccccccceEEEEEecccc
Q 023180 242 DGLLFYSL-FP----NGTIDRTSLHGSCPVIKGEKWVATKWIRD 280 (286)
Q Consensus 242 ~allF~n~-~~----~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 280 (286)
+|+||..- .| .|----.+.|++.+|.+|+++.+-.-+|+
T Consensus 129 da~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~tLgliFHD 172 (173)
T PF09859_consen 129 DALIFATNHRPVRGARGYYRVNMRHGVSRVRSGERHTLGLIFHD 172 (173)
T ss_pred CEEEEecCCCCcCCCccceecccccccccccccceEEEEEEeec
Confidence 99999843 22 13234467999999999999999887775
No 19
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=97.20 E-value=0.0044 Score=54.59 Aligned_cols=93 Identities=20% Similarity=0.076 Sum_probs=64.5
Q ss_pred CCcceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCccc-C-----CCCCccccccEE
Q 023180 162 GEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFL-D-----SGYDYKKCIGLK 235 (286)
Q Consensus 162 ~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~-~-----~~~~~~~~~~l~ 235 (286)
....-+.++.+|++-..|.- + +..+|-..||+..+.+|.+.|-......+ . ...+...+..+.
T Consensus 95 i~~~W~ni~~~Gg~h~~H~H---p--------~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~ 163 (201)
T TIGR02466 95 IQKAWVNILPQGGTHSPHLH---P--------GSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVY 163 (201)
T ss_pred EeeEeEEEcCCCCccCceEC---C--------CceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEE
Confidence 34567788999998888852 1 34799999999988888888854221110 0 000001123467
Q ss_pred EecCcccEEEeeecCCCCCCCCCCccccccccc-ceEEEE
Q 023180 236 VKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIK-GEKWVA 274 (286)
Q Consensus 236 V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~-G~K~i~ 274 (286)
|+|+.|++|+|+| .++|++.|-.. ++|+++
T Consensus 164 v~P~~G~lvlFPS---------~L~H~v~p~~~~~~RISi 194 (201)
T TIGR02466 164 VPPQEGRVLLFES---------WLRHEVPPNESEEERISV 194 (201)
T ss_pred ECCCCCeEEEECC---------CCceecCCCCCCCCEEEE
Confidence 9999999999998 89999999875 467665
No 20
>KOG3844 consensus Predicted component of NuA3 histone acetyltransferase complex [Chromatin structure and dynamics]
Probab=97.13 E-value=0.004 Score=59.45 Aligned_cols=164 Identities=18% Similarity=0.233 Sum_probs=102.5
Q ss_pred EEecCCCCHHHHHHHHHHHhc--CCCcceeeecCCceeeeecceee---ccceeecCCCCh------HHHHHHHHHHHHH
Q 023180 85 LYFPNFASAEQCQSIIATAKK--RLKPSQLALRQGETVESTKGTRT---SSGTFISASEDK------TGILELIEHKIAR 153 (286)
Q Consensus 85 ~~~~nfLs~eEC~~li~~a~~--~l~~s~v~~~~G~~~~~~~~~Rt---S~~~~l~~~ed~------~~v~~~I~~Ri~~ 153 (286)
+++++|+++...+.+.+.... +++.- .++-+|. .+-+-++.-+.+ +.+.+....-++.
T Consensus 39 ~~i~~~vnd~~l~~vrkei~~~~~f~~k-----------~tDlyr~~QtgdL~nl~~le~p~lf~~r~~Lyke~r~~~q~ 107 (476)
T KOG3844|consen 39 FIIRDFVNDSLLRVVRKEIHGSIHFTEK-----------ETDLYRVLQTGDLANLEGLEFPALFSFRDSLYKEARGEIQD 107 (476)
T ss_pred eeeeccCCHHHHHHHHHHHhhccchhhh-----------cchhhheeccccccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 689999997776666644332 23221 1112222 122222222222 1123344445556
Q ss_pred hhCCCCCCCCcceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCCC----CCccee-cccCCCcccCCCCCc
Q 023180 154 ATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVE----EGGETM-FPFENGIFLDSGYDY 228 (286)
Q Consensus 154 ~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~----eGGeT~-Fp~~~~~~~~~~~~~ 228 (286)
++|--....-++.+..|..|.+--+|-|.. +.|.+++++||.+.. -||++. ||..... .
T Consensus 108 vtg~~s~sk~Dms~s~Y~kgd~LL~HDD~i---------etRriaFilYL~~~Dwds~~GG~L~Lf~~d~~~-------~ 171 (476)
T KOG3844|consen 108 VTGGLSTSKIDMSGSYYRKGDHLLCHDDVI---------ETRRIAFILYLVDPDWDSEYGGELRLFPDDCPS-------Q 171 (476)
T ss_pred ccCccccceeeeceeeeeccceeccccccc---------cceEEEEEEEecCcccccccCceeEeccccccc-------C
Confidence 664323334457889999999999997754 578899999999864 377775 4542210 0
Q ss_pred cccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccce-EEEEEecccccc
Q 023180 229 KKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGE-KWVATKWIRDQE 282 (286)
Q Consensus 229 ~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~-K~i~~~Wi~~~~ 282 (286)
+...-.++.|.-...++|.- -+-+.|.+.-|.+-+ +..++.|+|...
T Consensus 172 P~s~~asl~P~~Nql~fFeV-------sp~SFH~V~Ev~sde~RlSIsGWfH~p~ 219 (476)
T KOG3844|consen 172 PKSVAASLEPQWNQLVFFEV-------SPISFHDVEEVLSDEPRLSISGWFHFPQ 219 (476)
T ss_pred ccchhhccCcccceEEEEEe-------cccchhhHHHHhccCcceeEeeeecCCc
Confidence 11134568899999999975 379999999999765 499999998653
No 21
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=97.04 E-value=0.016 Score=53.69 Aligned_cols=182 Identities=14% Similarity=0.127 Sum_probs=94.9
Q ss_pred CCEEEecCCCCHHHHHHHHHHHhcCCC-cceeeecCCceeeeecceeeccceeecCCCChHHH-----HHHHHHHHHHhh
Q 023180 82 PRALYFPNFASAEQCQSIIATAKKRLK-PSQLALRQGETVESTKGTRTSSGTFISASEDKTGI-----LELIEHKIARAT 155 (286)
Q Consensus 82 P~I~~~~nfLs~eEC~~li~~a~~~l~-~s~v~~~~G~~~~~~~~~RtS~~~~l~~~ed~~~v-----~~~I~~Ri~~~~ 155 (286)
-..++++++||++|++.|.+.++..+. ++........ ...|.. |-....++ .+ -..|...+++++
T Consensus 14 ~Gyv~~~~~~s~eei~~L~~~~~~~l~~~~~~~~~~~~-----~~~~~~---~~~~~~~~-~~~~l~~~~~l~~~~~~ll 84 (288)
T TIGR01762 14 NGFIGPFTLYSPEEMKETWKRIRLRLLDRSAAPYQDLG-----GTNIAN---YDRHLDDD-FLASHICRPEICHRVESIL 84 (288)
T ss_pred CCEEeCcCCCCHHHHHHHHHHHHHHhhccccccccCCC-----CceeEe---eeecccCH-HHHHHhcCHHHHHHHHHHh
Confidence 345789999999999999998764332 1111000000 011111 11111111 11 123445555566
Q ss_pred CCCCCCCCcceEEecCCCCccccCccCCCCCCCCC--------CCCceEEEEEEeccCCC-CCcceec-ccCCCcc-cCC
Q 023180 156 MLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGP--------QMSQRLASFLLYLSDVE-EGGETMF-PFENGIF-LDS 224 (286)
Q Consensus 156 glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~--------~~~~R~~T~liYLndv~-eGGeT~F-p~~~~~~-~~~ 224 (286)
|-+.-..-.--+.+...++-+.||.|.......+. ....+.+|+.|-|.|+. +-|.+.| |.+.... .+.
T Consensus 85 G~~v~l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~viPGSH~~~~~~~ 164 (288)
T TIGR01762 85 GPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQFIPGTHNSMNYDE 164 (288)
T ss_pred CCcEEeeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEEECCCCCCCCCCc
Confidence 64332211122444444455899999643221110 11247899999999985 4566655 4332210 000
Q ss_pred ---------------------CC------------Ccc--ccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccc
Q 023180 225 ---------------------GY------------DYK--KCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 269 (286)
Q Consensus 225 ---------------------~~------------~~~--~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 269 (286)
++ .+. +...+.+.=++|++++|. ..++|++.|-.+.
T Consensus 165 ~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~l~~d~~~~~~~~~~v~~~lkaGd~~~f~---------~~t~HgS~~N~S~ 235 (288)
T TIGR01762 165 TRRMTFEPDANNSVVKGGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFW---------STLMHASYPNSGE 235 (288)
T ss_pred ccccccCccccccccccccccccccccchhhcccccCCccccceeeeeeCCceEEEEC---------CCceecCCCCCCC
Confidence 00 000 012356777899999995 5899999999874
Q ss_pred --eEEEE-Eeccccc
Q 023180 270 --EKWVA-TKWIRDQ 281 (286)
Q Consensus 270 --~K~i~-~~Wi~~~ 281 (286)
.++.+ ..|+...
T Consensus 236 ~~~R~~~~~ry~~~~ 250 (288)
T TIGR01762 236 SQMRMGFASRYVPSF 250 (288)
T ss_pred CceEEEEEEEEcCCC
Confidence 35554 4566543
No 22
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=96.99 E-value=0.0072 Score=51.98 Aligned_cols=157 Identities=22% Similarity=0.254 Sum_probs=77.3
Q ss_pred EEEecCCCCHHHHHHHHHHHhc--CCCcceeeecCCceeeee-------------cceeeccc-eeecC--CCChHHHHH
Q 023180 84 ALYFPNFASAEQCQSIIATAKK--RLKPSQLALRQGETVEST-------------KGTRTSSG-TFISA--SEDKTGILE 145 (286)
Q Consensus 84 I~~~~nfLs~eEC~~li~~a~~--~l~~s~v~~~~G~~~~~~-------------~~~RtS~~-~~l~~--~ed~~~v~~ 145 (286)
+++++||||++|.+.|++.... .+...+.. .++..... ..++-+.. ..-.. ...+ +.+.
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p-~~l~ 78 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYP--MGKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFP-EWLS 78 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCC--CCCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCH-HHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEc--CCCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCcc-HHHH
Confidence 6899999999999999999873 22111111 11110000 11111111 00000 0112 2345
Q ss_pred HHHHHHHHhhC-CCCCCCCcceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCC
Q 023180 146 LIEHKIARATM-LPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDS 224 (286)
Q Consensus 146 ~I~~Ri~~~~g-lp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~ 224 (286)
.+.+++....+ .+........|..|..|+.-.+|.|.... ..+..++|+-+ |+..+|-..+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~-----~~~~~I~slSL-------G~~~~~~f~~~~---- 142 (194)
T PF13532_consen 79 RLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEY-----GFGPPIASLSL-------GSSRVFRFRNKS---- 142 (194)
T ss_dssp HHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC------CCSEEEEEEE-------ES-EEEEEEECG----
T ss_pred HHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccc-----cCCCcEEEEEE-------ccCceEEEeecc----
Confidence 55555555444 22233345678889999999999998632 13567777776 444445332110
Q ss_pred CCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccc
Q 023180 225 GYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 269 (286)
Q Consensus 225 ~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 269 (286)
.....+.|.-..|+++++. |...... |+..|+..+
T Consensus 143 ----~~~~~~~~~L~~gsl~vm~-----g~~r~~~-H~I~~~~~~ 177 (194)
T PF13532_consen 143 ----DDDEPIEVPLPPGSLLVMS-----GEARYDW-HGIPPVKKD 177 (194)
T ss_dssp ----GTS-EEEEEE-TTEEEEEE-----TTHHHHE-EEE-S-SCE
T ss_pred ----CCCccEEEEcCCCCEEEeC-----hHHhhhe-eEcccccCC
Confidence 0013578888899999996 2333345 999998874
No 23
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=96.06 E-value=0.023 Score=48.79 Aligned_cols=80 Identities=24% Similarity=0.299 Sum_probs=60.1
Q ss_pred CccccCccCCCCCCCCCCCCceEEEEEEeccCC-CCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCC
Q 023180 174 QKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDV-EEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPN 252 (286)
Q Consensus 174 ~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv-~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~ 252 (286)
-....|.|..... --+++++-|... +.||..++|..+.. -.|++|.|..|++|+|-.
T Consensus 85 r~t~~HrD~~~~~--------~~~~~~~t~~~gd~~~g~l~lp~~~~~----------~~g~~~~~~~GtVl~~~~---- 142 (171)
T PF12851_consen 85 RCTHSHRDTHNMP--------NGYDVLCTLGRGDYDGGRLELPGLDPN----------ILGVAFAYQPGTVLIFCA---- 142 (171)
T ss_pred cCccceecCCCCC--------CCeEEEEecCCccccCceEeccccccc----------cCCEEEecCCCcEEEEcc----
Confidence 3456788875432 236677666543 88999999962211 158999999999999975
Q ss_pred CCCCCCCccccccccc-----ceEEEEEeccc
Q 023180 253 GTIDRTSLHGSCPVIK-----GEKWVATKWIR 279 (286)
Q Consensus 253 g~~D~~~lH~g~PV~~-----G~K~i~~~Wi~ 279 (286)
....|+..||.. |+++.+.-+.|
T Consensus 143 ----~~~~Hgvtpv~~~~~~~~~R~slvfy~h 170 (171)
T PF12851_consen 143 ----KRELHGVTPVESPNRNHGTRISLVFYQH 170 (171)
T ss_pred ----cceeeecCcccCCCCCCCeEEEEEEEeE
Confidence 468999999997 99999988765
No 24
>PHA02923 hypothetical protein; Provisional
Probab=95.70 E-value=0.054 Score=50.07 Aligned_cols=97 Identities=13% Similarity=0.180 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhCCC--CCCCCcceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCC
Q 023180 142 GILELIEHKIARATMLP--QTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENG 219 (286)
Q Consensus 142 ~v~~~I~~Ri~~~~glp--~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~ 219 (286)
.+.+.|++.|-+-+... ......+-+..|++|.+ .|. + ..+.-..+++||+..+.||+|.|+..+
T Consensus 44 di~~~ir~liy~elk~v~~V~V~n~iT~ikYekgd~--~~l--~--------~~~~~y~LvLyL~~p~~GGt~i~~~~~- 110 (315)
T PHA02923 44 DISECIREILYKQFKNVRNIEVSSTISFIKYNPFND--TTL--T--------DDNMGYYLVIYLNRPKSGKTLIYPTPE- 110 (315)
T ss_pred HHHHHHHHHHHHhccCcceEEEeceEEEEEEcCCCc--cee--e--------cCceEEEEEEEEeccCCCCeEEEecCC-
Confidence 47788888776544332 12344588999999984 111 1 123778999999999999999998643
Q ss_pred cccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccceEEEEEe
Q 023180 220 IFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATK 276 (286)
Q Consensus 220 ~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~ 276 (286)
-.|.-+ +=++| |....|+..-|.+|+|.||-.
T Consensus 111 --------------t~i~~~--~DvLF---------dKsl~h~s~~V~~G~K~VAl~ 142 (315)
T PHA02923 111 --------------TVITSS--EDIMF---------SKSLNFRFENVKRGYKLVMCS 142 (315)
T ss_pred --------------CeEeec--cceee---------ecccccceeeeecCcEEEEEE
Confidence 122222 23666 578999999999999998755
No 25
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=95.52 E-value=0.83 Score=40.65 Aligned_cols=161 Identities=20% Similarity=0.262 Sum_probs=92.1
Q ss_pred cCCCEEEecCCCCHHHHHHHHHHHhc-----CCCcceeeecCCceee-------------eecceeeccceeecCCCCh-
Q 023180 80 WRPRALYFPNFASAEQCQSIIATAKK-----RLKPSQLALRQGETVE-------------STKGTRTSSGTFISASEDK- 140 (286)
Q Consensus 80 ~~P~I~~~~nfLs~eEC~~li~~a~~-----~l~~s~v~~~~G~~~~-------------~~~~~RtS~~~~l~~~ed~- 140 (286)
..|.++++++|. .++.+.|++..+. .+.. .....|..-. ....+|-|...-......+
T Consensus 16 ~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~--~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~ 92 (213)
T PRK15401 16 LAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRH--MVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPA 92 (213)
T ss_pred cCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccc--eecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCCC
Confidence 678899999996 7887877766543 2322 1111121100 0012333321100000011
Q ss_pred -HHHHHHHHHHHHHhhCCCCCCCCcceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCC
Q 023180 141 -TGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENG 219 (286)
Q Consensus 141 -~~v~~~I~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~ 219 (286)
-+.+..|.++++...+++....+..-|..|.+|+.-.+|.|..... ...-++++-+ |..-.|-....
T Consensus 93 ~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~-----~~~pI~SvSL-------G~~~~F~~~~~ 160 (213)
T PRK15401 93 MPASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERD-----FRAPIVSVSL-------GLPAVFQFGGL 160 (213)
T ss_pred chHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCccc-----CCCCEEEEeC-------CCCeEEEeccc
Confidence 0257788888888877754455668889999999999999974221 1233555553 44445543211
Q ss_pred cccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccc
Q 023180 220 IFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 269 (286)
Q Consensus 220 ~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 269 (286)
.. .....+|.-..|++|+|- |.. ...+|+.-|+..|
T Consensus 161 ~~--------~~~~~~l~L~~Gdllvm~-----G~s-r~~~HgVp~~~~~ 196 (213)
T PRK15401 161 KR--------SDPLQRILLEHGDVVVWG-----GPS-RLRYHGILPLKAG 196 (213)
T ss_pred CC--------CCceEEEEeCCCCEEEEC-----chH-hheeccCCcCCCC
Confidence 00 012468999999999994 332 3567999888765
No 26
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.65 E-value=0.41 Score=41.27 Aligned_cols=96 Identities=23% Similarity=0.265 Sum_probs=57.6
Q ss_pred EeecCCCEEEecCCCCHHHHHHHHHHHhcCCCcceeee------cCCceeeeecceeeccceeecCCCChHHHHHHHHHH
Q 023180 77 VLSWRPRALYFPNFASAEQCQSIIATAKKRLKPSQLAL------RQGETVESTKGTRTSSGTFISASEDKTGILELIEHK 150 (286)
Q Consensus 77 ~ls~~P~I~~~~nfLs~eEC~~li~~a~~~l~~s~v~~------~~G~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~R 150 (286)
++...|.+++++||+++||-..+++..+..-++-.-+. +-|.-. -....+. .+-+ +-++.+..+
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqNyGGvv--------h~~glip-eelP-~wLq~~v~k 76 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQNYGGVV--------HKTGLIP-EELP-PWLQYYVDK 76 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhhcCCcc--------ccCCcCc-cccC-HHHHHHHHH
Confidence 56678999999999999999999888764222211111 011100 0112222 2222 235566666
Q ss_pred HHHhhCCCCCCCCcceEEecCCCCccccCccCC
Q 023180 151 IARATMLPQTHGEAFNVLRYEIGQKYDSHYDAF 183 (286)
Q Consensus 151 i~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~ 183 (286)
|.. .|+=.+.....-|..|.+||---||.|+-
T Consensus 77 inn-lglF~s~~NHVLVNeY~pgqGImPHtDGP 108 (224)
T KOG3200|consen 77 INN-LGLFKSPANHVLVNEYLPGQGIMPHTDGP 108 (224)
T ss_pred hhc-ccccCCCcceeEeecccCCCCcCcCCCCC
Confidence 664 34322344456788899999999999984
No 27
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.55 E-value=1.6 Score=38.03 Aligned_cols=103 Identities=21% Similarity=0.207 Sum_probs=71.2
Q ss_pred cceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCC---CCCcceecccCCCcccCCCCCccccccEEEecCc
Q 023180 164 AFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDV---EEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRR 240 (286)
Q Consensus 164 ~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv---~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~ 240 (286)
..-++.|++|.+=-.|.|-.-..- =-+-+.|-|+++ +.|||-+.-....+. +..+-.|+-.+
T Consensus 125 TpLlLqYgpgD~NcLHQDLYGelv-------FPLQvailLsePg~DfTGGEF~lvEQRPR~--------QSr~~vvpLrq 189 (236)
T COG3826 125 TPLLLQYGPGDYNCLHQDLYGELV-------FPLQVAILLSEPGTDFTGGEFVLVEQRPRM--------QSRPTVVPLRQ 189 (236)
T ss_pred CceeEEecCCccchhhhhhhhcee-------eeeeEEEeccCCCCcccCceEEEEeccccc--------ccCCceeeccC
Confidence 356899999999889988542211 124456678886 479998875432211 12467888899
Q ss_pred ccEEEeeecCC--CC---CCCCCCcccccccccceEEEEEeccccc
Q 023180 241 GDGLLFYSLFP--NG---TIDRTSLHGSCPVIKGEKWVATKWIRDQ 281 (286)
Q Consensus 241 G~allF~n~~~--~g---~~D~~~lH~g~PV~~G~K~i~~~Wi~~~ 281 (286)
|++++|-.-+. +| .--....|++.-+.+|+++.+-+=||+.
T Consensus 190 G~g~vFavr~RPv~gtrG~~r~~lRHGvS~lRSG~R~t~GiIFHDA 235 (236)
T COG3826 190 GDGVVFAVRDRPVQGTRGWYRVPLRHGVSRLRSGERHTVGIIFHDA 235 (236)
T ss_pred CceEEEEeecCcccCccCccccchhcchhhhhcccceeeEEEeecC
Confidence 99999975322 23 3344678999999999999988877753
No 28
>PLN02485 oxidoreductase
Probab=87.20 E-value=4.3 Score=38.21 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=54.8
Q ss_pred cceEEecCCCC----------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCcccccc
Q 023180 164 AFNVLRYEIGQ----------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIG 233 (286)
Q Consensus 164 ~lqv~rY~~G~----------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~ 233 (286)
.+++++|.+-. .-.+|+|+. .+|+|. .|...||==+....+ ..
T Consensus 185 ~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g------------~lTlL~--qd~~~~GLqV~~~~g-------------~W 237 (329)
T PLN02485 185 VMRIIGYPGVSNLNGPPENDIGCGAHTDYG------------LLTLVN--QDDDITALQVRNLSG-------------EW 237 (329)
T ss_pred eEEEEeCCCCccccCCcccCcccccccCCC------------eEEEEe--ccCCCCeeeEEcCCC-------------cE
Confidence 47899997632 145677763 467763 444446644443211 35
Q ss_pred EEEecCcccEEEeee----cCCCCCCCCCCcccccccccceEEEEEecccc
Q 023180 234 LKVKPRRGDGLLFYS----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 280 (286)
Q Consensus 234 l~V~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 280 (286)
+.|+|..|.+||--- ...|| .-..++|.+.+....++|.+.-+++-
T Consensus 238 i~V~p~pg~~vVNiGD~L~~~TnG-~~~St~HRVv~~~~~~R~Si~~F~~p 287 (329)
T PLN02485 238 IWAIPIPGTFVCNIGDMLKIWSNG-VYQSTLHRVINNSPKYRVCVAFFYET 287 (329)
T ss_pred EECCCCCCcEEEEhHHHHHHHHCC-EeeCCCceecCCCCCCeEEEEEEecC
Confidence 899999998887410 11223 24578999986555578988777653
No 29
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown.
Probab=87.10 E-value=3.4 Score=37.91 Aligned_cols=104 Identities=18% Similarity=0.216 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCCCCcceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCC
Q 023180 139 DKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFEN 218 (286)
Q Consensus 139 d~~~v~~~I~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~ 218 (286)
+...+++.|++++.+ +.-.++.+++..|+.|+-++.-.+ ...+..++++=|..+..||..++-...
T Consensus 30 h~~~i~~EI~kh~~e----~V~~~~~i~i~~f~~~~~~~~~~~----------~~~~~sr~lvCi~sakkGG~iii~~~~ 95 (266)
T PF06822_consen 30 HVKIILSEIEKHINE----PVYVNNLISIQVFDKGQCYKSRIQ----------DNSSLSRILVCIQSAKKGGCIIIRNTI 95 (266)
T ss_pred hHHHHHHHHHHhcCC----eEEecCcEEEEEEeCCCceecccc----------CCCcceeEEEEeeccccCCeEEEeecc
Confidence 434577777777633 344567899999999988763211 124578899999999999988875431
Q ss_pred CcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccceEEEEEe
Q 023180 219 GIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATK 276 (286)
Q Consensus 219 ~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~ 276 (286)
.. ..-.++|..|.||+-. |.+...+.+|++|.-.++..
T Consensus 96 ~~-----------~kkii~~~~~~aVlLs---------pl~~y~Vs~V~~G~~i~i~l 133 (266)
T PF06822_consen 96 SN-----------DKKIITPNQNMAVLLS---------PLADYDVSNVTKGSMIIIVL 133 (266)
T ss_pred cC-----------CceEEecCCCeEEEec---------chhheEEEEecCCcEEEEEE
Confidence 11 2468999999999984 57888888999997766643
No 30
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=86.68 E-value=7.3 Score=35.59 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhCCCCC--------CCCcceEEecCCC------CccccCccCCCCCCCCCCCCceEEEEEEeccCCCC
Q 023180 143 ILELIEHKIARATMLPQT--------HGEAFNVLRYEIG------QKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEE 208 (286)
Q Consensus 143 v~~~I~~Ri~~~~glp~~--------~~E~lqv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~e 208 (286)
+...|.+-++...|++.. ....+++.+|.+- --..+|.|.. .+|+|+. +++
T Consensus 88 l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q-d~v-- 152 (262)
T PLN03001 88 LAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDFG------------AITLLIQ-DDV-- 152 (262)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCCC------------eeEEEEe-CCC--
Confidence 344455555555676531 1234788889752 1255777753 5788755 333
Q ss_pred CcceecccCCCcccCCCCCccccccEEEecCcccEEEee----ecCCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 209 GGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 209 GGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~----n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
||==+... + .-+.|+|..|..||-- ....|| .-..++|.+.-....++|.+..+++
T Consensus 153 ~GLqV~~~-g-------------~Wi~V~p~p~a~vVNiGD~l~~~tng-~~~S~~HRVv~~~~~~R~Sia~F~~ 212 (262)
T PLN03001 153 EGLQLLKD-A-------------EWLMVPPISDAILIIIADQTEIITNG-NYKSAQHRAIANANKARLSVATFHD 212 (262)
T ss_pred CceEEeeC-C-------------eEEECCCCCCcEEEEccHHHHHHhCC-ccccccceEEcCCCCCEEEEEEEEc
Confidence 56333321 1 3689999999887741 011233 2457899998555567998887765
No 31
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.16 E-value=1.1 Score=38.98 Aligned_cols=51 Identities=27% Similarity=0.473 Sum_probs=30.7
Q ss_pred EEeccCC--CCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCccccccccc
Q 023180 200 LLYLSDV--EEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIK 268 (286)
Q Consensus 200 liYLndv--~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~ 268 (286)
.|.+-|- -.||||..+..... ..+..---..|.+++-. |.+.+|..||+.-
T Consensus 149 ~I~~vDR~NI~gGet~lY~~~~~----------~p~f~kvl~pGe~~~l~--------Dh~~~H~~tpi~p 201 (226)
T COG4340 149 IIMLVDRQNIDGGETDLYAPDGA----------SPGFFKVLAPGEAVFLD--------DHRVLHGVTPIVP 201 (226)
T ss_pred EEEEeeeccccCceEEEEccCCC----------CcceEEeccCCcEEEec--------cchhcccccceec
Confidence 3344443 47999998754321 12333333455555542 7899999999863
No 32
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=83.07 E-value=10 Score=36.10 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=54.4
Q ss_pred cceEEecCCCC------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEe
Q 023180 164 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 237 (286)
Q Consensus 164 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~ 237 (286)
.+++.+|.+-. ...+|+|.. .+|+| +.|...||==+... + ..+.|+
T Consensus 204 ~lRl~~YPp~~~~~~~~g~~~HTD~g------------~lTlL--~qd~~v~GLQV~~~--g------------~Wi~V~ 255 (348)
T PLN00417 204 DTRFNMYPPCPRPDKVIGVKPHADGS------------AFTLL--LPDKDVEGLQFLKD--G------------KWYKAP 255 (348)
T ss_pred eeeeeecCCCCCcccccCCcCccCCC------------ceEEE--EecCCCCceeEeEC--C------------eEEECC
Confidence 47899997521 245787764 46766 34433456333321 1 368899
Q ss_pred cCcccEEEeee-c---CCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 238 PRRGDGLLFYS-L---FPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 238 P~~G~allF~n-~---~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
|..|.+||--- + ..|| .-..++|++.+...+.+|.+.-+++
T Consensus 256 p~pg~lVVNiGD~Le~~Tng-~~kSt~HRVv~~~~~~R~Si~fF~~ 300 (348)
T PLN00417 256 IVPDTILINVGDQMEIMSNG-IYKSPVHRVVTNREKERISVATFCI 300 (348)
T ss_pred CCCCcEEEEcChHHHHHhCC-eecccceEEecCCCCCEEEEEEEec
Confidence 99999887420 0 1222 3458899997655668999877765
No 33
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=82.86 E-value=14 Score=35.18 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=54.0
Q ss_pred cceEEecCCCC------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEe
Q 023180 164 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 237 (286)
Q Consensus 164 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~ 237 (286)
.+++.+|.+.. ...+|.|+. .+|+|+- ++ .||=-+... ...+.|+
T Consensus 201 ~lRl~~YPp~~~~~~~~g~~aHTD~g------------~lTlL~Q-d~--v~GLQV~~~--------------g~Wv~V~ 251 (341)
T PLN02984 201 VIRVYRYPQCSNEAEAPGMEVHTDSS------------VISILNQ-DE--VGGLEVMKD--------------GEWFNVK 251 (341)
T ss_pred eEEEEeCCCCCCcccccCccCccCCC------------ceEEEEe-CC--CCCeeEeeC--------------CceEECC
Confidence 58999997632 245777764 4788754 33 466334321 1468999
Q ss_pred cCcccEEEeee----cCCCCCCCCCCccccc-ccccceEEEEEecccc
Q 023180 238 PRRGDGLLFYS----LFPNGTIDRTSLHGSC-PVIKGEKWVATKWIRD 280 (286)
Q Consensus 238 P~~G~allF~n----~~~~g~~D~~~lH~g~-PV~~G~K~i~~~Wi~~ 280 (286)
|..|.+||--- ...|| .-..++|.+. +-....+|.+.-+++-
T Consensus 252 p~pgalVVNiGD~Le~wTNg-~~kSt~HRVv~~~~~~~R~Sia~F~~P 298 (341)
T PLN02984 252 PIANTLVVNLGDMMQVISDD-EYKSVLHRVGKRNKKKERYSICYFVFP 298 (341)
T ss_pred CCCCeEEEECChhhhhhcCC-eeeCCCCccccCCCCCCeEEEEEEecC
Confidence 99999888521 11233 2357899993 4334578988777653
No 34
>PLN02904 oxidoreductase
Probab=81.80 E-value=13 Score=35.43 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=53.0
Q ss_pred cceEEecCCCC------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEe
Q 023180 164 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 237 (286)
Q Consensus 164 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~ 237 (286)
.+++.+|.+.. --.+|.|+. .+|+|+ .|+ ||==+....+ ..+.|+
T Consensus 209 ~lrl~~YPp~p~~~~~~g~~~HtD~g------------~lTlL~--qd~--~GLQV~~~~g-------------~Wi~V~ 259 (357)
T PLN02904 209 VMAVNCYPACPEPEIALGMPPHSDFG------------SLTILL--QSS--QGLQIMDCNK-------------NWVCVP 259 (357)
T ss_pred EEEeeecCCCCCcccccCCcCccCCC------------ceEEEe--cCC--CeeeEEeCCC-------------CEEECC
Confidence 57888998631 244777763 578885 453 5533333211 368999
Q ss_pred cCcccEEEeee----cCCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 238 PRRGDGLLFYS----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 238 P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
|..|..||--- ...|| .-..++|++......++|.+.-++.
T Consensus 260 p~pgalVVNiGD~Le~~TNG-~~kSt~HRVv~~~~~~R~Si~~F~~ 304 (357)
T PLN02904 260 YIEGALIVQLGDQVEVMSNG-IYKSVVHRVTVNKDYKRLSFASLHS 304 (357)
T ss_pred CCCCeEEEEccHHHHHHhCC-eeeccCCcccCCCCCCEEEEEEeec
Confidence 99998888420 01122 3468899996444567998887764
No 35
>PHA02985 hypothetical protein; Provisional
Probab=81.21 E-value=6.4 Score=36.01 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=72.2
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCCCCcceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccC
Q 023180 138 EDKTGILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFE 217 (286)
Q Consensus 138 ed~~~v~~~I~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~ 217 (286)
+|...+++.|++++.+ +.-..+.+++..|+.|+.|..- ...++..+++=+..+..||..+--..
T Consensus 36 ~h~~~I~~EI~~~i~E----~V~~~n~i~i~~f~~~~~~~~~------------~~~~~SkilICiqsAkkGG~iIi~~~ 99 (271)
T PHA02985 36 EHQKIILDEIEQYIDE----TVLVKNLISIEVFNKKKKYYQN------------IPSRLSKIIICIQSAKKGGCIIIINN 99 (271)
T ss_pred hhhhHHHHHHHHhcCC----eEEecceeEEEEEcCCcceEee------------CCCCceeEEEEEeecccCCEEEEecc
Confidence 3445677888887733 3335667899999988654321 23467889999999999998887431
Q ss_pred CCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccceEEEEE
Q 023180 218 NGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVAT 275 (286)
Q Consensus 218 ~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~ 275 (286)
.. ...-.++|..|.||+-. |.+-..+.+|.+|.-.++.
T Consensus 100 -~~----------~~K~ii~~~~n~aVlLS---------PLs~Y~Vs~V~kGsli~i~ 137 (271)
T PHA02985 100 -IT----------NNKKIITLNINHIIILS---------PLSKYTVSKVSKGSLIIIV 137 (271)
T ss_pred -cc----------cCceEEecCCCeEEEec---------chhhceEEEecCCcEEEEE
Confidence 11 03468999999999985 5788888899998766554
No 36
>PLN02216 protein SRG1
Probab=80.61 E-value=13 Score=35.48 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=53.4
Q ss_pred cceEEecCCCC------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEe
Q 023180 164 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 237 (286)
Q Consensus 164 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~ 237 (286)
.+++.+|.+-. -..+|.|.. .+|+|+.-++ .||==+... ...+.|+
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g------------~lTlL~q~~~--v~GLQV~~~--------------g~Wi~V~ 262 (357)
T PLN02216 211 SIRMNYYPPCPQPDQVIGLTPHSDAV------------GLTILLQVNE--VEGLQIKKD--------------GKWVSVK 262 (357)
T ss_pred eeEEeecCCCCCcccccCccCcccCc------------eEEEEEecCC--CCceeEEEC--------------CEEEECC
Confidence 57888897631 245677653 4677744344 466444432 1468999
Q ss_pred cCcccEEEeee----cCCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 238 PRRGDGLLFYS----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 238 P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
|..|..||--- ...|| .-..++|++......+++.+.-++.
T Consensus 263 p~pgalvVNiGD~L~~~TNG-~~kS~~HRVv~~~~~~R~Si~~F~~ 307 (357)
T PLN02216 263 PLPNALVVNVGDILEIITNG-TYRSIEHRGVVNSEKERLSVATFHN 307 (357)
T ss_pred CCCCeEEEEcchhhHhhcCC-eeeccCceeecCCCCCEEEEEEEec
Confidence 99998887420 11233 3458899986444567898877654
No 37
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=80.30 E-value=18 Score=34.24 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=54.1
Q ss_pred CcceEEecCCCC------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEE
Q 023180 163 EAFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKV 236 (286)
Q Consensus 163 E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V 236 (286)
..+++.+|.+-. -..+|+|.. .+|+|+- |...||==++.. + ..+.|
T Consensus 190 ~~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~q--d~~v~GLQV~~~--g------------~Wi~V 241 (337)
T PLN02639 190 QHMAVNYYPPCPEPELTYGLPAHTDPN------------ALTILLQ--DQQVAGLQVLKD--G------------KWVAV 241 (337)
T ss_pred cEEEEEcCCCCCCcccccCCCCCcCCC------------ceEEEEe--cCCcCceEeecC--C------------eEEec
Confidence 357888897631 145677753 4777643 433456444431 1 46899
Q ss_pred ecCcccEEEeee----cCCCCCCCCCCcccccccccceEEEEEecccc
Q 023180 237 KPRRGDGLLFYS----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 280 (286)
Q Consensus 237 ~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 280 (286)
+|..|.+||--- ...|| .-..++|.+-.....++|++.-+++-
T Consensus 242 ~p~pg~lVVNiGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Sia~F~~p 288 (337)
T PLN02639 242 NPHPGAFVINIGDQLQALSNG-RYKSVWHRAVVNTDKERMSVASFLCP 288 (337)
T ss_pred cCCCCeEEEechhHHHHHhCC-eeeccCcccccCCCCCEEEEEEEecC
Confidence 999998888320 01223 24578999854334679998877653
No 38
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=79.65 E-value=42 Score=29.44 Aligned_cols=84 Identities=24% Similarity=0.225 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhhCCCCCCCCcceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccC
Q 023180 144 LELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLD 223 (286)
Q Consensus 144 ~~~I~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~ 223 (286)
+-.+...+...+|.+....|..-+..|.+|..-.+|.|-.... ...-++++-+=.+ ..|-......
T Consensus 87 l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~-----~~~~v~slSLg~~-------~~F~~~~~~r-- 152 (194)
T COG3145 87 LLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEED-----DRPPVASLSLGAP-------CIFRLRGRRR-- 152 (194)
T ss_pred cHHHHHHHHHHhcCCCCChhheeEEeccCCCcccccccccccc-----CCCceEEEecCCC-------eEEEeccccC--
Confidence 3345555666789998888999999999999999999975432 1122455443333 3332211100
Q ss_pred CCCCccccccEEEecCcccEEEee
Q 023180 224 SGYDYKKCIGLKVKPRRGDGLLFY 247 (286)
Q Consensus 224 ~~~~~~~~~~l~V~P~~G~allF~ 247 (286)
.....++.=..|++|++-
T Consensus 153 ------~~~~~~~~L~~Gdvvvm~ 170 (194)
T COG3145 153 ------RGPGLRLRLEHGDVVVMG 170 (194)
T ss_pred ------CCCceeEEecCCCEEEec
Confidence 014688999999999994
No 39
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=79.38 E-value=13 Score=34.50 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhCC-CCCC----CCcceEEecCCC-----C-ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCccee
Q 023180 145 ELIEHKIARATML-PQTH----GEAFNVLRYEIG-----Q-KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETM 213 (286)
Q Consensus 145 ~~I~~Ri~~~~gl-p~~~----~E~lqv~rY~~G-----~-~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~ 213 (286)
..|.+-++...|+ +... ...+++++|.+- + .-.+|.|.. .+|+|+. |...||==+
T Consensus 126 ~~ll~~la~~Lgl~~~~~f~~~~~~lr~~~YP~~p~~~~~~g~~~HtD~g------------~lTlL~q--d~~~~GLqV 191 (300)
T PLN02365 126 MDLARKLAESLGLVEGDFFQGWPSQFRINKYNFTPETVGSSGVQIHTDSG------------FLTILQD--DENVGGLEV 191 (300)
T ss_pred HHHHHHHHHHcCCCChHHHhhcccceeeeecCCCCCccccccccCccCCC------------ceEEEec--CCCcCceEE
Confidence 3344444445677 4322 245889999542 1 244677653 4777744 433456334
Q ss_pred cccCCCcccCCCCCccccccEEEecCcccEEEee----ecCCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 214 FPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 214 Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~----n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
.....+ ..+.|+|..|..||-- ....|| .-..++|.+...-..++|.+.-++.
T Consensus 192 ~~~~~g------------~Wi~V~p~pga~vVNiGD~l~~~TNG-~~~St~HRVv~~~~~~R~Si~~F~~ 248 (300)
T PLN02365 192 MDPSSG------------EFVPVDPLPGTLLVNLGDVATAWSNG-RLCNVKHRVQCKEATMRISIASFLL 248 (300)
T ss_pred EECCCC------------eEEecCCCCCeEEEEhhHHHHHHhCC-ceecccceeEcCCCCCEEEEEEEec
Confidence 332111 3689999999988832 001233 3458899997554557998877753
No 40
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=78.80 E-value=18 Score=34.04 Aligned_cols=87 Identities=20% Similarity=0.245 Sum_probs=57.1
Q ss_pred cceEEecCCCC------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEe
Q 023180 164 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 237 (286)
Q Consensus 164 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~ 237 (286)
.+++.+|.+.. -..+|.|.. .+|+| |.|...||--++.. . ...+.|+
T Consensus 177 ~~r~n~Yp~cp~pe~~lGl~~HtD~~------------~lTiL--lqd~~V~GLQv~~~-d------------g~Wi~V~ 229 (322)
T KOG0143|consen 177 VMRLNYYPPCPEPELTLGLGAHTDKS------------FLTIL--LQDDDVGGLQVFTK-D------------GKWIDVP 229 (322)
T ss_pred EEEEeecCCCcCccccccccCccCcC------------ceEEE--EccCCcCceEEEec-C------------CeEEECC
Confidence 67888898742 267787753 36666 55545678777751 1 1468999
Q ss_pred cCcccEEEee----ecCCCCCCCCCCcccccccccceEEEEEecc
Q 023180 238 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWI 278 (286)
Q Consensus 238 P~~G~allF~----n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi 278 (286)
|.+|..|+=- ....|| .-..++|++..-.+.+|+.+-.++
T Consensus 230 P~p~a~vVNiGD~l~~lSNG-~ykSv~HRV~~n~~~~R~Sia~F~ 273 (322)
T KOG0143|consen 230 PIPGAFVVNIGDMLQILSNG-RYKSVLHRVVVNGEKERISVAFFV 273 (322)
T ss_pred CCCCCEEEEcccHHhHhhCC-cccceEEEEEeCCCCceEEEEEEe
Confidence 9997666621 011234 456889999988877788776554
No 41
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=78.67 E-value=20 Score=33.97 Aligned_cols=90 Identities=14% Similarity=0.094 Sum_probs=54.7
Q ss_pred CcceEEecCCCC------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEE
Q 023180 163 EAFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKV 236 (286)
Q Consensus 163 E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V 236 (286)
..+++.+|.+-. ...+|+|+. .+|+|+- | ..||==++.... ...+.|
T Consensus 193 ~~lR~~~YPp~~~~~~~~g~~~HtD~g------------~lTlL~q--d-~v~GLQV~~~~~------------g~Wi~V 245 (345)
T PLN02750 193 SFARFNHYPPCPAPHLALGVGRHKDGG------------ALTVLAQ--D-DVGGLQISRRSD------------GEWIPV 245 (345)
T ss_pred eEEEEEecCCCCCcccccCcCCCCCCC------------eEEEEec--C-CCCceEEeecCC------------CeEEEc
Confidence 458899997631 255777753 4777633 3 246644432111 136899
Q ss_pred ecCcccEEEee----ecCCCCCCCCCCcccccccccceEEEEEecccc
Q 023180 237 KPRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 280 (286)
Q Consensus 237 ~P~~G~allF~----n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 280 (286)
+|..|..||=- ....|| .-..++|++......++|.+.-+++-
T Consensus 246 ~p~pg~~vVNiGD~L~~~Tng-~~~St~HRVv~~~~~~R~Si~~F~~P 292 (345)
T PLN02750 246 KPIPDAFIINIGNCMQVWTND-LYWSAEHRVVVNSQKERFSIPFFFFP 292 (345)
T ss_pred cCCCCeEEEEhHHHHHHHhCC-eeecccceeccCCCCCEEEEEEeecC
Confidence 99999888731 001223 34578999975545679988777653
No 42
>PLN02947 oxidoreductase
Probab=76.80 E-value=26 Score=33.72 Aligned_cols=86 Identities=19% Similarity=0.172 Sum_probs=53.2
Q ss_pred cceEEecCCCC------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEe
Q 023180 164 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 237 (286)
Q Consensus 164 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~ 237 (286)
.+++.+|.+.. ...+|+|.. .+|+|+. ++ .||==+... + ..+.|+
T Consensus 226 ~lrln~YPp~p~~~~~~G~~~HTD~g------------~lTlL~Q-d~--v~GLQV~~~--g------------~Wi~V~ 276 (374)
T PLN02947 226 MMVVNCYPACPEPELTLGMPPHSDYG------------FLTLLLQ-DE--VEGLQIMHA--G------------RWVTVE 276 (374)
T ss_pred eeeeecCCCCCCcccccCCCCccCCC------------ceEEEEe-cC--CCCeeEeEC--C------------EEEeCC
Confidence 46777887632 245677753 5788865 33 456444442 1 468899
Q ss_pred cCcccEEEee----ecCCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 238 PRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 238 P~~G~allF~----n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
|..|..||-- ....|| .-..++|++.......+|.+..++.
T Consensus 277 p~pga~VVNvGD~Lq~~SNG-~~kS~~HRVv~~~~~~R~Sia~F~~ 321 (374)
T PLN02947 277 PIPGSFVVNVGDHLEIFSNG-RYKSVLHRVRVNSTKPRISVASLHS 321 (374)
T ss_pred CCCCeEEEEeCceeeeeeCC-EEeccccccccCCCCCEEEEEEEec
Confidence 9998877732 011233 2458899995444567888877664
No 43
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=75.97 E-value=27 Score=33.41 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=53.3
Q ss_pred cceEEecCCCC------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEe
Q 023180 164 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 237 (286)
Q Consensus 164 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~ 237 (286)
.+++.+|.+-. ...+|.|+. .+|+|+- ++ .||==+.....+ ..+.|+
T Consensus 196 ~lrl~~YP~~~~~~~~~G~~~HTD~g------------~lTlL~Q-d~--v~GLQV~~~~~~------------~Wi~Vp 248 (358)
T PLN02515 196 KVVVNYYPKCPQPDLTLGLKRHTDPG------------TITLLLQ-DQ--VGGLQATRDGGK------------TWITVQ 248 (358)
T ss_pred eEEEeecCCCCChhhccCCCCCCCCC------------eEEEEec-CC--CCceEEEECCCC------------eEEECC
Confidence 46788887621 255777764 5777744 33 355333332110 258899
Q ss_pred cCcccEEEeee----cCCCCCCCCCCcccccccccceEEEEEecccc
Q 023180 238 PRRGDGLLFYS----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 280 (286)
Q Consensus 238 P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 280 (286)
|..|..||=-- ...|| .-..++|.+-....+++|.+.-+++-
T Consensus 249 p~pgalVVNiGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Si~~F~~P 294 (358)
T PLN02515 249 PVEGAFVVNLGDHGHYLSNG-RFKNADHQAVVNSNCSRLSIATFQNP 294 (358)
T ss_pred CCCCeEEEEccHHHHHHhCC-eeeeecceEECCCCCCEEEEEEEecC
Confidence 99998887320 11233 34588999865555679988777653
No 44
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=75.96 E-value=20 Score=33.78 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=54.2
Q ss_pred cceEEecCCCC------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEe
Q 023180 164 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 237 (286)
Q Consensus 164 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~ 237 (286)
.+++.+|.+-. -..+|+|.. .+|+| +.|...||==+... ...+.|+
T Consensus 159 ~lRl~~YPp~~~~~~~~G~~~HTD~g------------~lTlL--~qd~~v~GLQV~~~--------------g~Wi~V~ 210 (321)
T PLN02299 159 GTKVSNYPPCPKPDLVKGLRAHTDAG------------GIILL--FQDDKVSGLQLLKD--------------GEWVDVP 210 (321)
T ss_pred eeeeEecCCCCCcccccCccCccCCC------------eEEEE--EecCCCCCcCcccC--------------CeEEECC
Confidence 37899998521 255788764 46777 44433456334321 1468899
Q ss_pred cCcccEEEeee----cCCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 238 PRRGDGLLFYS----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 238 P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
|..|.+||--- ...|| .-..+.|.+.....+++|.+.-+++
T Consensus 211 p~pg~lvVNiGD~l~~~Tng-~~kS~~HRVv~~~~~~R~Si~~F~~ 255 (321)
T PLN02299 211 PMRHSIVVNLGDQLEVITNG-KYKSVMHRVVAQTDGNRMSIASFYN 255 (321)
T ss_pred CCCCeEEEEeCHHHHHHhCC-ceecccceeecCCCCCEEEEEEEec
Confidence 99998887420 11233 2457899997545678999877765
No 45
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=75.60 E-value=34 Score=32.67 Aligned_cols=87 Identities=13% Similarity=0.094 Sum_probs=53.1
Q ss_pred cceEEecCCC----C--ccccCccCCCCCCCCCCCCceEEEEEEeccCC-CCCcceecccCCCcccCCCCCccccccEEE
Q 023180 164 AFNVLRYEIG----Q--KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDV-EEGGETMFPFENGIFLDSGYDYKKCIGLKV 236 (286)
Q Consensus 164 ~lqv~rY~~G----~--~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv-~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V 236 (286)
.+++.+|.+- . --.+|+|.. .+|+|+ .|. ..||==+... + ..+.|
T Consensus 212 ~lR~~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~--qd~~~v~GLQV~~~--g------------~Wi~V 263 (361)
T PLN02758 212 AVRMNYYPPCSRPDLVLGLSPHSDGS------------ALTVLQ--QGKGSCVGLQILKD--N------------TWVPV 263 (361)
T ss_pred eeeeecCCCCCCcccccCccCccCCc------------eeEEEE--eCCCCCCCeeeeeC--C------------EEEeC
Confidence 4778888752 1 135777763 477774 443 4566334321 1 36889
Q ss_pred ecCcccEEEeee----cCCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 237 KPRRGDGLLFYS----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 237 ~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
+|..|..|+--- ...|| .-..++|++......++|.+.-+++
T Consensus 264 ~p~pgalVVNiGD~L~~~SNG-~~kS~~HRVv~~~~~~R~Sia~F~~ 309 (361)
T PLN02758 264 HPVPNALVINIGDTLEVLTNG-KYKSVEHRAVTNKEKDRLSIVTFYA 309 (361)
T ss_pred CCCCCeEEEEccchhhhhcCC-eeecccceeecCCCCCEEEEEEEec
Confidence 999998887421 11233 3458899997544457888877664
No 46
>PLN02997 flavonol synthase
Probab=75.29 E-value=16 Score=34.50 Aligned_cols=87 Identities=16% Similarity=0.085 Sum_probs=54.1
Q ss_pred cceEEecCCCC------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEe
Q 023180 164 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 237 (286)
Q Consensus 164 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~ 237 (286)
.+++.+|.+-. ...+|+|.. .+|+|+. | ..||==+... + ..+.|+
T Consensus 184 ~lRl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~~-g-------------~Wi~V~ 234 (325)
T PLN02997 184 VLRVNFYPPTQDTELVIGAAAHSDMG------------AIALLIP--N-EVPGLQAFKD-E-------------QWLDLN 234 (325)
T ss_pred eeeeecCCCCCCcccccCccCccCCC------------ceEEEec--C-CCCCEEEeEC-C-------------cEEECC
Confidence 47888997631 256777764 5788743 3 2466444432 1 368999
Q ss_pred cCcccEEEeee----cCCCCCCCCCCcccccccccceEEEEEecccc
Q 023180 238 PRRGDGLLFYS----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 280 (286)
Q Consensus 238 P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 280 (286)
|.+|.+||--- ...|| .-..++|.+..-....+|.+.-+++-
T Consensus 235 p~pgalvVNiGD~Le~~TNG-~~kSt~HRVv~~~~~~R~Si~fF~~P 280 (325)
T PLN02997 235 YINSAVVVIIGDQLMRMTNG-RFKNVLHRAKTDKERLRISWPVFVAP 280 (325)
T ss_pred CCCCeEEEEechHHHHHhCC-ccccccceeeCCCCCCEEEEEEEecC
Confidence 99998877421 01233 34578999975445578988776653
No 47
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=74.92 E-value=15 Score=34.23 Aligned_cols=86 Identities=20% Similarity=0.259 Sum_probs=51.3
Q ss_pred ceEEecCCC----Cc--cccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEec
Q 023180 165 FNVLRYEIG----QK--YDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKP 238 (286)
Q Consensus 165 lqv~rY~~G----~~--y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P 238 (286)
+++++|.+- .. ..+|+|.. .+|+|+ .+...|| +..... + ..+.|+|
T Consensus 155 lrl~~YP~~~~~~~~~G~~~HtD~g------------~lTlL~--q~~~v~G-LqV~~~-g------------~Wi~V~p 206 (303)
T PLN02403 155 TKVAKYPECPRPELVRGLREHTDAG------------GIILLL--QDDQVPG-LEFLKD-G------------KWVPIPP 206 (303)
T ss_pred eeeEcCCCCCCcccccCccCccCCC------------eEEEEE--ecCCCCc-eEeccC-C------------eEEECCC
Confidence 789999752 12 45787764 356664 3323455 333221 1 3688999
Q ss_pred CcccEEEeeec------CCCCCCCCCCcccccccccceEEEEEecccc
Q 023180 239 RRGDGLLFYSL------FPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 280 (286)
Q Consensus 239 ~~G~allF~n~------~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 280 (286)
..|++++- |+ ..|| .-..++|++.....+.+|.+.-+++-
T Consensus 207 ~p~~~lvV-NvGD~L~~~Tng-~~~S~~HRVv~~~~~~R~Si~~F~~p 252 (303)
T PLN02403 207 SKNNTIFV-NTGDQLEVLSNG-RYKSTLHRVMADKNGSRLSIATFYNP 252 (303)
T ss_pred CCCCEEEE-EehHHHHHHhCC-eeecccceeecCCCCCEEEEEEEEcC
Confidence 99654433 22 1233 34578999976666789998877653
No 48
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=74.86 E-value=29 Score=33.18 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=54.0
Q ss_pred cceEEecCCCC------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEe
Q 023180 164 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 237 (286)
Q Consensus 164 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~ 237 (286)
.+++.+|.+.. ...+|+|.. .+|+|+. ++ .||==+..... ..+.|+
T Consensus 211 ~lRl~~YPp~p~~~~~~G~~~HtD~g------------~lTiL~Q-d~--v~GLQV~~~~~-------------~Wi~V~ 262 (358)
T PLN02254 211 ALQLNSYPVCPDPDRAMGLAPHTDSS------------LLTILYQ-SN--TSGLQVFREGV-------------GWVTVP 262 (358)
T ss_pred eEEEecCCCCCCcccccCcCCccCCC------------cEEEEec-CC--CCCceEECCCC-------------EEEEcc
Confidence 46788898631 256777753 5788864 33 36644444211 358999
Q ss_pred cCcccEEEeee----cCCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 238 PRRGDGLLFYS----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 238 P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
|..|..||--- ...|| .-..++|++..-...++|.+.-+++
T Consensus 263 p~pgalVVNiGD~lq~~SNg-~~kS~~HRVv~~~~~~R~Sia~F~~ 307 (358)
T PLN02254 263 PVPGSLVVNVGDLLHILSNG-RFPSVLHRAVVNKTRHRISVAYFYG 307 (358)
T ss_pred cCCCCEEEEhHHHHHHHhCC-eeccccceeecCCCCCEEEEEEEec
Confidence 99999988421 11233 3458899995433457888876654
No 49
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=74.58 E-value=3.3 Score=36.54 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=29.9
Q ss_pred ccEEEecCcccEEEeeecCCCCCCCCCCccccccc--ccceEEEEEec
Q 023180 232 IGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPV--IKGEKWVATKW 277 (286)
Q Consensus 232 ~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV--~~G~K~i~~~W 277 (286)
..+.++-++|++|+|.| .+++|+..+. ..|.++..+.|
T Consensus 219 ~~~~~~~~~GDlli~dN--------~~~lHgR~~~~~~~~~R~L~R~~ 258 (258)
T PF02668_consen 219 YTYRHRWQPGDLLIWDN--------HRVLHGRTAFDDPDGDRHLLRVW 258 (258)
T ss_dssp GEEEEE--TTEEEEEET--------TTEEEEE--E-STTSSEEEEEEE
T ss_pred hcccccCCCceEEEEcC--------CeeEecCCCCCCCCCCEEEEEeC
Confidence 46788899999999998 6999999998 56899999988
No 50
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=74.40 E-value=23 Score=33.66 Aligned_cols=88 Identities=19% Similarity=0.186 Sum_probs=54.5
Q ss_pred CcceEEecCCC------CccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEE
Q 023180 163 EAFNVLRYEIG------QKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKV 236 (286)
Q Consensus 163 E~lqv~rY~~G------~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V 236 (286)
..+++.+|.+- -.-.+|+|+. .+|+|+- | ..||==++.. + ..+.|
T Consensus 197 ~~lrl~~YPp~~~~~~~~G~~~HtD~g------------~lTlL~Q--d-~v~GLQV~~~-g-------------~Wi~V 247 (348)
T PLN02912 197 QHMAINYYPPCPQPELTYGLPGHKDAN------------LITVLLQ--D-EVSGLQVFKD-G-------------KWIAV 247 (348)
T ss_pred ceeeeeecCCCCChhhcCCcCCCcCCC------------ceEEEEE--C-CCCceEEEEC-C-------------cEEEC
Confidence 35788899862 1245777764 4777744 4 3466444432 1 46899
Q ss_pred ecCcccEEEee----ecCCCCCCCCCCcccccccccceEEEEEecccc
Q 023180 237 KPRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 280 (286)
Q Consensus 237 ~P~~G~allF~----n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 280 (286)
+|..|..||-- ....|| .-..++|++.....+.+|.+.-+++-
T Consensus 248 ~p~pgalvVNiGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Sia~F~~p 294 (348)
T PLN02912 248 NPIPNTFIVNLGDQMQVISND-KYKSVLHRAVVNTDKERISIPTFYCP 294 (348)
T ss_pred CCcCCeEEEEcCHHHHHHhCC-EEEcccccccCCCCCCEEEEEEEecC
Confidence 99999888741 011233 34588999854445679988777653
No 51
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=74.12 E-value=3.8 Score=35.81 Aligned_cols=98 Identities=19% Similarity=0.162 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCc----ceEEecCCC--C-----ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCc
Q 023180 142 GILELIEHKIARATMLPQTHGEA----FNVLRYEIG--Q-----KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGG 210 (286)
Q Consensus 142 ~v~~~I~~Ri~~~~glp~~~~E~----lqv~rY~~G--~-----~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGG 210 (286)
++++.|-.....+++......+. ++-.|+... . -=+.|.|+. .-+++.+|--+++ +||
T Consensus 71 ~~~~~ll~~~~~~~~~~~~~~~~~~i~vHq~Ri~a~~~~~g~ptPEGiH~DG~----------d~v~~~li~r~Ni-~GG 139 (195)
T PF10014_consen 71 PVLQALLRFDAEIFGWDEDSSEPWHIGVHQIRIIATPDEPGEPTPEGIHRDGV----------DFVFIHLINRHNI-EGG 139 (195)
T ss_dssp HHHHHHHHHHHHHHHCCS-GGGEEEEEEEEEEEETTTS--B--STTSSB--SS----------SEEEEEEEEEESE-EE-
T ss_pred HHHHHHHHHHHHHhcccccCCCCEEEEEEEEEEEEecCccCCcCCCCccCCCC----------CEEEEEEEcCCCc-cCc
Confidence 45566665555555544322333 333454431 1 124455554 3467777777666 888
Q ss_pred ceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCccccccccc
Q 023180 211 ETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIK 268 (286)
Q Consensus 211 eT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~ 268 (286)
+|........ ......--..|+.+++. |.+.+|.+.||..
T Consensus 140 ~s~i~~~~~~----------~~~~~~l~~p~d~l~~~--------D~~~~H~vtpI~~ 179 (195)
T PF10014_consen 140 ESQIYDNDKE----------ILFFFTLLEPGDTLLVD--------DRRVWHYVTPIRP 179 (195)
T ss_dssp -EEEEETTSS----------EEEEE---STTEEEEEE--------TTTEEEEE--EEE
T ss_pred eEEEEeCCCC----------cceEEEecCCCCEEEEe--------CCcceECCCceec
Confidence 8877543221 12345556778888884 6899999999974
No 52
>PLN02276 gibberellin 20-oxidase
Probab=71.75 E-value=43 Score=31.97 Aligned_cols=87 Identities=21% Similarity=0.206 Sum_probs=54.7
Q ss_pred CcceEEecCCCC------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEE
Q 023180 163 EAFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKV 236 (286)
Q Consensus 163 E~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V 236 (286)
..+++.+|.+.. --.+|+|+. .+|+|+- | ..||==+... ...+.|
T Consensus 206 ~~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~~--------------g~Wi~V 256 (361)
T PLN02276 206 SIMRCNYYPPCQEPELTLGTGPHCDPT------------SLTILHQ--D-QVGGLQVFVD--------------NKWRSV 256 (361)
T ss_pred ceeeeEeCCCCCCcccccCCccccCCc------------eeEEEEe--c-CCCceEEEEC--------------CEEEEc
Confidence 457888897641 245777753 5777753 4 3566445431 146899
Q ss_pred ecCcccEEEeee----cCCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 237 KPRRGDGLLFYS----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 237 ~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
+|..|.+||--- ...|| .-..++|.+.......+|.+.-+++
T Consensus 257 ~p~pgalVVNiGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Sia~F~~ 302 (361)
T PLN02276 257 RPRPGALVVNIGDTFMALSNG-RYKSCLHRAVVNSERERRSLAFFLC 302 (361)
T ss_pred CCCCCeEEEEcHHHHHHHhCC-ccccccceeecCCCCCEEEEEEEec
Confidence 999999888531 01223 3457899985444567998887765
No 53
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.69 E-value=16 Score=34.15 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=54.1
Q ss_pred ccccCccCCCCCCCCCCCCceEEEEEEeccCCC-CCcceec-ccCCCccc-CCC---CCccccccEEEecCcccEEEeee
Q 023180 175 KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVE-EGGETMF-PFENGIFL-DSG---YDYKKCIGLKVKPRRGDGLLFYS 248 (286)
Q Consensus 175 ~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~-eGGeT~F-p~~~~~~~-~~~---~~~~~~~~l~V~P~~G~allF~n 248 (286)
.=.+|.|..... ....-...+.+=|-|.. +-|.|.+ |.+..... .++ ..|-+...+-|.-.+|++|+|.
T Consensus 132 ~t~~HqD~~~~~----~~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~~~~r~d~~~y~~~~~~pv~lekGDallF~- 206 (299)
T COG5285 132 ATRWHQDYPLVS----PGYPALVNAWIALCDFTEDNGATLVVPGSHKWDVIPERPDHETYLERNAVPVELEKGDALLFN- 206 (299)
T ss_pred cccccccccccc----CCccceEEEEEeccccccccCceEEEecccccccCCCCCCccchhhhcceeeeecCCCEEEEc-
Confidence 356899954332 13344677888888864 5677766 65432210 111 1344455788889999999994
Q ss_pred cCCCCCCCCCCcccccccccceEE
Q 023180 249 LFPNGTIDRTSLHGSCPVIKGEKW 272 (286)
Q Consensus 249 ~~~~g~~D~~~lH~g~PV~~G~K~ 272 (286)
+.++|++---..+-+-
T Consensus 207 --------~~L~HaA~aNrT~~~R 222 (299)
T COG5285 207 --------GSLWHAAGANRTSADR 222 (299)
T ss_pred --------chhhhhhhcCCCCccc
Confidence 6899999887777433
No 54
>PTZ00273 oxidase reductase; Provisional
Probab=69.07 E-value=61 Score=30.23 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=52.0
Q ss_pred cceEEecCCCC-------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEE
Q 023180 164 AFNVLRYEIGQ-------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKV 236 (286)
Q Consensus 164 ~lqv~rY~~G~-------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V 236 (286)
.+++.+|.+.. .-.+|+|.. .+|+|. .| ..||==++...+ .-+.|
T Consensus 178 ~lrl~~YP~~~~~~~~~~g~~~HTD~g------------~lTlL~--qd-~~~GLqV~~~~g-------------~Wi~V 229 (320)
T PTZ00273 178 VFRMKHYPALPQTKKGRTVCGEHTDYG------------IITLLY--QD-SVGGLQVRNLSG-------------EWMDV 229 (320)
T ss_pred eeeeeecCCCCCccccCcccccccCCC------------eEEEEe--cC-CCCceEEECCCC-------------CEEeC
Confidence 47888997631 134677653 577774 34 245633443211 35899
Q ss_pred ecCcccEEEeee----cCCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 237 KPRRGDGLLFYS----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 237 ~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
+|..|.+||--- ...|| .-..++|.+... ..++|.+.-+++
T Consensus 230 ~p~pg~lvVNvGD~l~~~TnG-~~kSt~HRVv~~-~~~R~Si~~F~~ 274 (320)
T PTZ00273 230 PPLEGSFVVNIGDMMEMWSNG-RYRSTPHRVVNT-GVERYSMPFFCE 274 (320)
T ss_pred CCCCCeEEEEHHHHHHHHHCC-eeeCCCccccCC-CCCeEEEEEEEc
Confidence 999998887420 11233 345789999743 357888877665
No 55
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=68.66 E-value=50 Score=31.58 Aligned_cols=88 Identities=17% Similarity=0.069 Sum_probs=52.6
Q ss_pred cceEEecCCCC------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEe
Q 023180 164 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 237 (286)
Q Consensus 164 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~ 237 (286)
.+++.+|.+-. .-.+|+|.. .+|+|+. +...||==+... ...+.|+
T Consensus 214 ~lRl~~YP~~p~~~~~~g~~~HtD~g------------~lTlL~q--~~~v~GLQV~~~--------------g~W~~V~ 265 (362)
T PLN02393 214 CLRVNYYPKCPQPDLTLGLSPHSDPG------------GMTILLP--DDNVAGLQVRRD--------------DAWITVK 265 (362)
T ss_pred eeeeeecCCCCCcccccccccccCCc------------eEEEEee--CCCCCcceeeEC--------------CEEEECC
Confidence 57788886421 256777764 4677643 333456444421 1368899
Q ss_pred cCcccEEEeee----cCCCCCCCCCCcccccccccceEEEEEecccc
Q 023180 238 PRRGDGLLFYS----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 280 (286)
Q Consensus 238 P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 280 (286)
|..|.+||--- ...|| .-..++|.+......++|.+.-+++-
T Consensus 266 p~pgalVVNiGD~l~~~Tng-~~kSt~HRVv~~~~~~R~SiafF~~P 311 (362)
T PLN02393 266 PVPDAFIVNIGDQIQVLSNA-IYKSVEHRVIVNSAKERVSLAFFYNP 311 (362)
T ss_pred CCCCeEEEEcchhhHhhcCC-eeeccceecccCCCCCEEEEEEEecC
Confidence 99998887420 01122 24578999954334579988877654
No 56
>PLN02704 flavonol synthase
Probab=65.34 E-value=25 Score=33.15 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=52.7
Q ss_pred cceEEecCCCC------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEe
Q 023180 164 AFNVLRYEIGQ------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 237 (286)
Q Consensus 164 ~lqv~rY~~G~------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~ 237 (286)
-+++.+|.+.. ...+|+|+. .+|+|+- |. .||==+... ..-+.|+
T Consensus 200 ~lrl~~YP~~~~~~~~~g~~~HtD~g------------~lTlL~q--d~-v~GLQV~~~--------------g~Wi~V~ 250 (335)
T PLN02704 200 LLKINYYPPCPRPDLALGVVAHTDMS------------AITILVP--NE-VQGLQVFRD--------------DHWFDVK 250 (335)
T ss_pred hhhhhcCCCCCCcccccCccCccCCc------------ceEEEec--CC-CCceeEeEC--------------CEEEeCC
Confidence 36777887521 245777764 4677755 32 455334321 1468999
Q ss_pred cCcccEEEeee----cCCCCCCCCCCcccccccccceEEEEEecccc
Q 023180 238 PRRGDGLLFYS----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIRD 280 (286)
Q Consensus 238 P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 280 (286)
|..|.+||--- ...|| .-..++|.+...-..++|.+.-+++-
T Consensus 251 p~pg~lvVNvGD~L~~~TNg-~~kSt~HRVv~~~~~~R~Si~~F~~p 296 (335)
T PLN02704 251 YIPNALVIHIGDQIEILSNG-KYKSVLHRTTVNKEKTRMSWPVFLEP 296 (335)
T ss_pred CCCCeEEEEechHHHHHhCC-eeecccceeecCCCCCeEEEEEEecC
Confidence 99998777420 01122 34578999965445579988877653
No 57
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=63.97 E-value=8.8 Score=34.51 Aligned_cols=40 Identities=33% Similarity=0.591 Sum_probs=33.9
Q ss_pred ccEEEecCcccEEEeeecCCCCCCCCCCccccccccc---ceEEEEEeccc
Q 023180 232 IGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIK---GEKWVATKWIR 279 (286)
Q Consensus 232 ~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~---G~K~i~~~Wi~ 279 (286)
..+.++-++|++|+|.| .+++|+-.+-.. +.+|..+.|+.
T Consensus 218 ~~~~~~l~~Gdivi~DN--------~r~lHgR~~f~~~~~~~R~L~r~~i~ 260 (262)
T cd00250 218 NQLTVKLEPGDLLIFDN--------RRVLHGRTAFSPRYGGDRWLKGCYVD 260 (262)
T ss_pred hEEEEEcCCCCEEEEec--------hhhhcCCCCCCCCCCCceEEEEEEec
Confidence 35788999999999998 699999988664 57999999984
No 58
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=63.64 E-value=5.3 Score=30.98 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhhhccc
Q 023180 16 TALLLCSFFFLAGFYGST 33 (286)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~ 33 (286)
.++++|+|.|+||++.++
T Consensus 4 w~l~Lc~~SF~~G~lft~ 21 (95)
T PF13334_consen 4 WVLLLCIASFCAGMLFTN 21 (95)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 478999999999999877
No 59
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=63.32 E-value=37 Score=32.01 Aligned_cols=90 Identities=21% Similarity=0.299 Sum_probs=60.2
Q ss_pred CCCcceEEecCC------CCccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccE
Q 023180 161 HGEAFNVLRYEI------GQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGL 234 (286)
Q Consensus 161 ~~E~lqv~rY~~------G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l 234 (286)
.++.++++||.. ++.=+.|.|+. .+|++ +.| ..||=-+.+..+ .-+
T Consensus 172 ~~~~~RLlrYP~~~~~~~~~~~GaHtD~G------------~lTLl--~Qd-~~~GLqv~~~~g-------------~Wl 223 (322)
T COG3491 172 PNSVLRLLRYPSRPAREGADGVGAHTDYG------------LLTLL--FQD-DVGGLEVRPPNG-------------GWL 223 (322)
T ss_pred chheEEEEecCCCcccccccccccccCCC------------eEEEE--Eec-ccCCeEEecCCC-------------Cee
Confidence 467799999983 34457888874 35555 344 467766766532 468
Q ss_pred EEecCcccEEEeee-c---CCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 235 KVKPRRGDGLLFYS-L---FPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 235 ~V~P~~G~allF~n-~---~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
.|.|..|..|+..- | ..|| .-..|.|.++--..=++|.+--++.
T Consensus 224 ~v~P~pgtlvVNiGdmLe~~Tng-~lrST~HRV~~~~~~~R~SipfF~~ 271 (322)
T COG3491 224 DVPPIPGTLVVNIGDMLERWTNG-RLRSTVHRVRNPPGVDRYSIPFFLE 271 (322)
T ss_pred ECCCCCCeEEEeHHHHHHHHhCC-eeccccceeecCCCccceeeeeecc
Confidence 99999999999752 1 1223 3458899998766437888765554
No 60
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=62.13 E-value=92 Score=29.50 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=54.7
Q ss_pred cceEEecCCCC------c--cccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEE
Q 023180 164 AFNVLRYEIGQ------K--YDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLK 235 (286)
Q Consensus 164 ~lqv~rY~~G~------~--y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~ 235 (286)
.+++.+|.+-. . -.+|+|.. .+|+|+- | ..||==+.... ...+.
T Consensus 179 ~lRl~~YP~~~~~~~~~~~g~~~HTD~g------------~lTlL~Q--d-~v~GLQV~~~~-------------g~Wi~ 230 (335)
T PLN02156 179 CLRMNHYPEKEETPEKVEIGFGEHTDPQ------------LISLLRS--N-DTAGLQICVKD-------------GTWVD 230 (335)
T ss_pred eEeEEeCCCCCCCccccccCCCCccCCC------------ceEEEEe--C-CCCceEEEeCC-------------CCEEE
Confidence 58899997632 1 34577753 4787754 3 24563343221 14689
Q ss_pred EecCcccEEEee----ecCCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 236 VKPRRGDGLLFY----SLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 236 V~P~~G~allF~----n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
|.|..|..|+-- ....|| .-..+.|.+......++|.+.-+++
T Consensus 231 Vpp~pga~VVNiGD~l~~wTNg-~~kSt~HRVv~~~~~~R~SiafF~~ 277 (335)
T PLN02156 231 VPPDHSSFFVLVGDTLQVMTNG-RFKSVKHRVVTNTKRSRISMIYFAG 277 (335)
T ss_pred ccCCCCcEEEEhHHHHHHHhCC-eeeccceeeecCCCCCEEEEEEeec
Confidence 999999888842 011233 2468999998666667999877765
No 61
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=60.05 E-value=72 Score=30.43 Aligned_cols=85 Identities=14% Similarity=0.084 Sum_probs=52.5
Q ss_pred cceEEecCCC----C--ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEe
Q 023180 164 AFNVLRYEIG----Q--KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVK 237 (286)
Q Consensus 164 ~lqv~rY~~G----~--~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~ 237 (286)
.+++.+|.+- . ...+|+|+. .+|+|+. | ..||==+.. .+ ..+.|+
T Consensus 212 ~lrl~~YP~~~~~~~~~g~~~HTD~g------------~lTlL~q--d-~v~GLQV~~-~g-------------~Wi~V~ 262 (360)
T PLN03178 212 QMKINYYPRCPQPDLALGVEAHTDVS------------ALTFILH--N-MVPGLQVLY-EG-------------KWVTAK 262 (360)
T ss_pred hhheeccCCCCCCccccCcCCccCCC------------ceEEEee--C-CCCceeEeE-CC-------------EEEEcC
Confidence 4678889752 1 245787764 4788743 3 345533332 11 468999
Q ss_pred cCcccEEEeeecC------CCCCCCCCCcccccccccceEEEEEecccc
Q 023180 238 PRRGDGLLFYSLF------PNGTIDRTSLHGSCPVIKGEKWVATKWIRD 280 (286)
Q Consensus 238 P~~G~allF~n~~------~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~~ 280 (286)
|..|.+||- +- .|| .-..++|.+..--.+.+|.+.-+++-
T Consensus 263 p~pg~lvVN--iGD~L~~~TNG-~~kSt~HRVv~~~~~~R~Si~~F~~P 308 (360)
T PLN03178 263 CVPDSIVVH--IGDTLEILSNG-RYKSILHRGLVNKEKVRISWAVFCEP 308 (360)
T ss_pred CCCCeEEEE--ccHHHHHHhCC-ccccccceeecCCCCCeEEEEEEecC
Confidence 999987773 32 123 34588999753334579988877653
No 62
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=58.47 E-value=10 Score=34.38 Aligned_cols=97 Identities=20% Similarity=0.215 Sum_probs=53.9
Q ss_pred CCCEEEecCCCCHHHHHHHHHHHhc-CCCcceeeecC---C-ceeeeecceeeccceeecCCCChHHHHHHHHHHHHHhh
Q 023180 81 RPRALYFPNFASAEQCQSIIATAKK-RLKPSQLALRQ---G-ETVESTKGTRTSSGTFISASEDKTGILELIEHKIARAT 155 (286)
Q Consensus 81 ~P~I~~~~nfLs~eEC~~li~~a~~-~l~~s~v~~~~---G-~~~~~~~~~RtS~~~~l~~~ed~~~v~~~I~~Ri~~~~ 155 (286)
-|.|.+++||||.+|=..|+++... .+.-|.-..++ | +.+--.+..|+..-+-++ ...+.+.+|+..+-
T Consensus 71 ~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~~F~G~P------~~~~~v~rrm~~yp 144 (306)
T KOG3959|consen 71 IPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTDTFVGMP------EYADMVLRRMSEYP 144 (306)
T ss_pred cCCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccCcccCCc------hHHHHHHHHhhccc
Confidence 3789999999999999999999865 23222211110 1 100012334554433232 25677778877654
Q ss_pred CCCC-CCCCcceEEecCC--CCccccCccCCC
Q 023180 156 MLPQ-THGEAFNVLRYEI--GQKYDSHYDAFN 184 (286)
Q Consensus 156 glp~-~~~E~lqv~rY~~--G~~y~~H~D~~~ 184 (286)
++.- ...|.. =+-|++ |.--.||.|...
T Consensus 145 ~l~gfqp~EqC-nLeYep~kgsaIdpH~DD~W 175 (306)
T KOG3959|consen 145 VLKGFQPFEQC-NLEYEPVKGSAIDPHQDDMW 175 (306)
T ss_pred hhhccCcHHHc-CcccccccCCccCccccchh
Confidence 3211 111111 134764 888999999653
No 63
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=58.39 E-value=38 Score=34.02 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=55.7
Q ss_pred ecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCC-CCCcceecccCCC-cc------c---C-CC----CCccc--
Q 023180 169 RYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDV-EEGGETMFPFENG-IF------L---D-SG----YDYKK-- 230 (286)
Q Consensus 169 rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv-~eGGeT~Fp~~~~-~~------~---~-~~----~~~~~-- 230 (286)
.|.-| .||+++.. +.+-++|.|.|+... -......|-.... .. . + .+ +++..
T Consensus 359 ~Y~gg---~WHvEG~l-------NE~IvATalYyyd~eNIT~s~L~FR~~~~d~~~~~~~~~~q~~~~~~~~~~g~~~~~ 428 (501)
T PF14033_consen 359 EYPGG---SWHVEGQL-------NEHIVATALYYYDSENITESRLSFRQQTDDPDLDQELSYEQDDHEWLERVFGIEDGG 428 (501)
T ss_pred CCCCC---CccccCCc-------ccceeEEEEEEEecCccCCCceEeeeeccCccccccccccccchhHHHHhcCCCCCc
Confidence 45444 68888753 357789999998742 2344666644331 11 0 0 00 12221
Q ss_pred -c--ccEEEecCcccEEEeeecCCCCCCCCCCcccccccc------cceEEEEEecccc
Q 023180 231 -C--IGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVI------KGEKWVATKWIRD 280 (286)
Q Consensus 231 -~--~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~------~G~K~i~~~Wi~~ 280 (286)
| .-=+|.-+.|++|+|+| ...|.+.|.. -|.+-+++.|+-+
T Consensus 429 ~~~q~~Gsv~~~~gr~i~fPN---------~~qhrv~~f~L~D~tkpGhrkil~lfLvD 478 (501)
T PF14033_consen 429 PAVQELGSVETKEGRLIAFPN---------TLQHRVSPFELADPTKPGHRKILALFLVD 478 (501)
T ss_pred cceEEcCcEEccCCcEEeccc---------hhhhccCCccccCCCCCCcEEEEEEEecC
Confidence 1 11268889999999999 4667666543 4888888888754
No 64
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=54.19 E-value=24 Score=30.20 Aligned_cols=86 Identities=22% Similarity=0.237 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCcceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcc
Q 023180 142 GILELIEHKIARATMLPQTHGEAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIF 221 (286)
Q Consensus 142 ~v~~~I~~Ri~~~~glp~~~~E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~ 221 (286)
+.+..|.++++...+++....+..-|..|.+|+.-.+|.|.... + ...-++++-+ |-...|-.....
T Consensus 74 ~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~---~--~~~pI~SvSL-------G~~r~F~~~~~~- 140 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEP---D--LRAPLLSVSL-------GLPAIFLIGGLK- 140 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCccccccccccc---c--CCCCEEEEeC-------CCCEEEEecCCc-
Confidence 46788888999888876555667788889999999999994221 1 1223444432 333444331110
Q ss_pred cCCCCCccccccEEEecCcccEEEee
Q 023180 222 LDSGYDYKKCIGLKVKPRRGDGLLFY 247 (286)
Q Consensus 222 ~~~~~~~~~~~~l~V~P~~G~allF~ 247 (286)
.+.....+.-..|++|++.
T Consensus 141 -------~~~~~~~l~L~sGsllvM~ 159 (169)
T TIGR00568 141 -------RNDPPKRLRLHSGDVVIMG 159 (169)
T ss_pred -------CCCceEEEEeCCCCEEEEC
Confidence 0013578899999999994
No 65
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=52.21 E-value=10 Score=26.99 Aligned_cols=20 Identities=35% Similarity=0.733 Sum_probs=14.7
Q ss_pred HHHHHHH-HhhhhccccccCC
Q 023180 19 LLCSFFF-LAGFYGSTFLSRD 38 (286)
Q Consensus 19 ~~~~~~~-~~~~~~~~~~~~~ 38 (286)
|+++||| |.|..+|-+-|++
T Consensus 5 LvsLfFFSLM~LlSs~l~p~~ 25 (64)
T PF03511_consen 5 LVSLFFFSLMGLLSSYLAPKE 25 (64)
T ss_pred HHHHHHHHHHHHHHHhcCccc
Confidence 4444444 9999999988775
No 66
>PF04650 YSIRK_signal: YSIRK type signal peptide; InterPro: IPR005877 Many surface proteins found in Streptococcus, Staphylococcus, and related lineages share apparently homologous signal sequences. A motif resembling [YF]SIRKxxxGxxS[VIA] appears at the start of the transmembrane domain. The GxxS motif appears perfectly conserved, suggesting a specific function and not just homology. ; GO: 0016020 membrane
Probab=46.73 E-value=14 Score=21.97 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=16.9
Q ss_pred CCCccccc-cc-ccchhHHHHHHHHHH
Q 023180 1 MKGKAKRS-ST-KLGLPTALLLCSFFF 25 (286)
Q Consensus 1 ~~~~~~~~-~~-~~~~~~~~~~~~~~~ 25 (286)
|+.|.+-+ |+ ++|+..|++..+||+
T Consensus 1 ~~k~~rysIRK~svGv~SV~ig~~~~~ 27 (27)
T PF04650_consen 1 MEKKQRYSIRKLSVGVASVLIGTLFFL 27 (27)
T ss_pred CCcccEEeEEccccchhHHHHHHHHhC
Confidence 34444444 34 889999998888764
No 67
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=43.98 E-value=4.6 Score=39.70 Aligned_cols=70 Identities=30% Similarity=0.320 Sum_probs=53.0
Q ss_pred CceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccceEE
Q 023180 193 SQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKW 272 (286)
Q Consensus 193 ~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~ 272 (286)
+-+......|+||+.+||+..|......+ ....++|+.|+.+-|.+- ..-.|+..+|++|..-
T Consensus 364 ~~~~~~a~~~~~dd~~~~el~~t~~d~~t----------~~a~~k~~~~re~~~~~g-------~e~~~~~~~~~kg~e~ 426 (471)
T KOG4459|consen 364 TELDYFALLYLNDDFEGGELLFTEPDAKT----------YTAISKPECGRECAFSSG-------AENPHGVKAVTKGLEC 426 (471)
T ss_pred HHHHhhccHhhcCccccccceecCCcccc----------hhhccccccccchhhhcc-------ccCccchhhhhhhhHH
Confidence 45678889999999999999996433221 356789999999999752 3456899999999776
Q ss_pred EEEeccc
Q 023180 273 VATKWIR 279 (286)
Q Consensus 273 i~~~Wi~ 279 (286)
-+.-|..
T Consensus 427 ~~~lw~~ 433 (471)
T KOG4459|consen 427 AVALWPT 433 (471)
T ss_pred hhhcCcc
Confidence 6666654
No 68
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=43.43 E-value=43 Score=25.02 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=31.3
Q ss_pred EEeccCCCCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccc
Q 023180 200 LLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 269 (286)
Q Consensus 200 liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 269 (286)
+.-++|...|+...|.... ..+.|.-..|....|.| ...|.|+|+..|
T Consensus 4 v~~~~~l~~g~~~~~~~~g-------------~~~~v~r~~~~~~a~~~---------~CpH~g~~L~~g 51 (98)
T cd03528 4 VCAVDELPEGEPKRVDVGG-------------RPIAVYRVDGEFYATDD---------LCTHGDASLSEG 51 (98)
T ss_pred EEEhhhcCCCCEEEEEECC-------------eEEEEEEECCEEEEECC---------cCCCCCCCCCCC
Confidence 4446677677766665321 24455555677777766 799999998765
No 69
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=42.66 E-value=1.3e+02 Score=28.41 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=52.6
Q ss_pred cceEEecCCCC-------ccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEE
Q 023180 164 AFNVLRYEIGQ-------KYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKV 236 (286)
Q Consensus 164 ~lqv~rY~~G~-------~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V 236 (286)
.+++++|.+.. ...+|+|.. .+|+|+ .| ..||==+....... +...+.|
T Consensus 183 ~lrl~~YP~~~~~~~~~~g~~~HTD~g------------~lTlL~--qd-~v~GLQV~~~~~~~---------~g~Wi~V 238 (332)
T PLN03002 183 TMRLLRYQGISDPSKGIYACGAHSDFG------------MMTLLA--TD-GVMGLQICKDKNAM---------PQKWEYV 238 (332)
T ss_pred heeeeeCCCCCCcccCccccccccCCC------------eEEEEe--eC-CCCceEEecCCCCC---------CCcEEEC
Confidence 47899997631 145677753 578884 34 24664454321000 0135889
Q ss_pred ecCcccEEEeee----cCCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 237 KPRRGDGLLFYS----LFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 237 ~P~~G~allF~n----~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
+|..|..||--- ...|| .-..++|.+..- ..++|.+.-+++
T Consensus 239 pp~pg~~VVNiGD~L~~wTng-~~kSt~HRVv~~-~~~R~Sia~F~~ 283 (332)
T PLN03002 239 PPIKGAFIVNLGDMLERWSNG-FFKSTLHRVLGN-GQERYSIPFFVE 283 (332)
T ss_pred CCCCCeEEEEHHHHHHHHhCC-eeECcCCeecCC-CCCeeEEEEEec
Confidence 999998887420 11223 235789999633 357888877665
No 70
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=41.74 E-value=19 Score=30.15 Aligned_cols=34 Identities=12% Similarity=-0.056 Sum_probs=17.6
Q ss_pred CCCcccccccccchhHHHHHHHHHHHhhhhcccc
Q 023180 1 MKGKAKRSSTKLGLPTALLLCSFFFLAGFYGSTF 34 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (286)
|+.|.++..+.+.+-.++++++.++++.+|.+++
T Consensus 1 m~~~~~~rl~~~~~~~~~~~~~~~L~~~a~~~~~ 34 (148)
T PRK13254 1 MMKRKRRRLLIILGALAALGLAVALVLYALRQNI 34 (148)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5444443222444445555666666666665554
No 71
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=38.16 E-value=30 Score=33.82 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=25.4
Q ss_pred CCCccccc----ccccchhHHHHHHHHHHHhhhhccccc
Q 023180 1 MKGKAKRS----STKLGLPTALLLCSFFFLAGFYGSTFL 35 (286)
Q Consensus 1 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (286)
|.+|.++. +..+..-.|+++|++.|++|.+.++-+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~ 39 (408)
T PLN03193 1 MSTKSRGEEYSSRSVVSRKWTLLLCLGCFCAGMLFTDRM 39 (408)
T ss_pred CCcccccccccccccccHHHHHHHHHHHHHHHHhhcccc
Confidence 55555554 336666779999999999999876544
No 72
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=36.35 E-value=59 Score=25.03 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=32.4
Q ss_pred EEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccc
Q 023180 198 SFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 269 (286)
Q Consensus 198 T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 269 (286)
+.+.-++|..+|+...|... ..+.|.-..|....|.| ...|.++|+..|
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~--------------~~i~v~~~~g~~~A~~~---------~CpH~g~~L~~G 52 (106)
T PRK09965 4 IYACPVADLPEGEALRVDTS--------------PVIALFNVGGEFYAIDD---------RCSHGNASLSEG 52 (106)
T ss_pred EEeeeHHHcCCCCeEEEeCC--------------CeEEEEEECCEEEEEeC---------cCCCCCCCCCce
Confidence 34556788888887776531 12344445777777765 789999998654
No 73
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=33.60 E-value=84 Score=24.03 Aligned_cols=47 Identities=28% Similarity=0.344 Sum_probs=30.5
Q ss_pred eccCCCCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccc
Q 023180 202 YLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 269 (286)
Q Consensus 202 YLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 269 (286)
-++|..+|+...|..... ..+.++...|..-.|.| ...|.++|+..|
T Consensus 6 ~~~~l~~g~~~~~~~~~~------------~~~~~~~~~g~~~A~~n---------~CpH~g~~L~~g 52 (108)
T cd03474 6 SLDDVWEGEMELVDVDGE------------EVLLVAPEGGEFRAFQG---------ICPHQEIPLAEG 52 (108)
T ss_pred ehhccCCCceEEEEECCe------------EEEEEEccCCeEEEEcC---------cCCCCCCCcccC
Confidence 356666776666543110 23456667777777766 789999998766
No 74
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=33.59 E-value=46 Score=31.73 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=32.2
Q ss_pred cEEEecCcccEEEeeecCCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 233 GLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 233 ~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
.+.++=++|++|+|.| .+++|+-..-. |.+|..-.++-
T Consensus 312 ~~~~~l~pGd~vi~DN--------~rvLHgRtaf~-g~R~L~G~Y~d 349 (362)
T TIGR02410 312 EIEFKLRPGTVLIFDN--------WRVLHSRTSFT-GYRRMCGCYLT 349 (362)
T ss_pred EEEEEcCCccEEEEee--------EEEeecCCCcC-CceEEEEEEEc
Confidence 5678888999999998 69999999875 88888877763
No 75
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=31.27 E-value=17 Score=29.57 Aligned_cols=32 Identities=16% Similarity=0.293 Sum_probs=0.4
Q ss_pred CCCcccccccccchhHHHHHHHHHHHhhhhccc
Q 023180 1 MKGKAKRSSTKLGLPTALLLCSFFFLAGFYGST 33 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (286)
||.|+||- +.+.+-.+++++++++++..+.++
T Consensus 1 ~~~~~~rl-~~~~~~~~~i~~~~~l~~~~~~~~ 32 (131)
T PF03100_consen 1 MKRRKKRL-ILVVLGLVIIAAAIYLILYSFSDS 32 (131)
T ss_dssp --------------------------------S
T ss_pred CCcceeeh-hhHHHHHHHHHHHHHHHHHHhhcc
Confidence 66666652 133333444455555555555444
No 76
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=31.16 E-value=87 Score=23.45 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=29.6
Q ss_pred EeccCCCCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccc
Q 023180 201 LYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 269 (286)
Q Consensus 201 iYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 269 (286)
.-++|..+|+...|..... .-+-++...|....|.| ...|.++|+..|
T Consensus 5 ~~~~~l~~~~~~~~~~~g~------------~i~l~r~~~g~~~A~~~---------~CpH~g~~L~~g 52 (98)
T cd03530 5 GALEDIPPRGARKVQTGGG------------EIAVFRTADDEVFALEN---------RCPHKGGPLSEG 52 (98)
T ss_pred EEHHHCCCCCcEEEEECCE------------EEEEEEeCCCCEEEEcC---------cCCCCCCCccCC
Confidence 3456667777666653210 12334444577777765 799999998876
No 77
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.23 E-value=42 Score=27.10 Aligned_cols=18 Identities=28% Similarity=0.504 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHhhhhc
Q 023180 14 LPTALLLCSFFFLAGFYG 31 (286)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (286)
|-+||++++|++|++++.
T Consensus 4 l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 4 LFAIIIVAILLFLFLFYC 21 (130)
T ss_pred eHHHHHHHHHHHHHHHHH
Confidence 444555555555554443
No 78
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=29.32 E-value=28 Score=30.97 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=19.6
Q ss_pred cchhHHHHHHHHHHHhhhhcccccc
Q 023180 12 LGLPTALLLCSFFFLAGFYGSTFLS 36 (286)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (286)
++..++||+|.+.||.-...++=+|
T Consensus 135 IIIAVLfLICT~LfLSTVVLANKVS 159 (227)
T PF05399_consen 135 IIIAVLFLICTLLFLSTVVLANKVS 159 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999988777776555
No 79
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=28.62 E-value=62 Score=30.81 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=32.1
Q ss_pred cEEEecCcccEEEeeecCCCCCCCCCCcccccccc--cceEEEEEeccc
Q 023180 233 GLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVI--KGEKWVATKWIR 279 (286)
Q Consensus 233 ~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~--~G~K~i~~~Wi~ 279 (286)
.+..+=++|++|+|.| .+++|+..+-. .|.+|....++.
T Consensus 313 ~~~~~l~pGd~vi~DN--------~rvlH~R~af~~~~~~R~L~g~Y~d 353 (366)
T TIGR02409 313 KFTFKLEPGDLVLFDN--------TRLLHARDAFSNPEGKRHLQGCYAD 353 (366)
T ss_pred EEEEEcCCCcEEEEec--------eEEeecCCCcCCCCCceEEEEEEEc
Confidence 4677888999999998 69999998875 578888777763
No 80
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=27.71 E-value=58 Score=31.85 Aligned_cols=79 Identities=20% Similarity=0.185 Sum_probs=45.9
Q ss_pred CCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccc
Q 023180 190 PQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 269 (286)
Q Consensus 190 ~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 269 (286)
.....|-.|+.+||.+..+||+..|-......--...+.. .-+...=..|-+++..+ .+.|+..+-+.|
T Consensus 277 ~~~~~~e~~l~v~l~nq~~gG~L~~~~~~~~~h~~~~~~~--EiFdn~h~p~qa~LHrg---------~~~~~a~~~~~~ 345 (415)
T KOG1971|consen 277 FCVDAREVGLFVCLSNQFEGGELLFTGKYCTKHLRTDDLW--EIFDNSHDPGQAYLHRG---------YHKHGARATIVG 345 (415)
T ss_pred cccchhhcceeEEecccccCCeeEeeccccccccCCCchh--hhccCcCCCccceecCc---------chhccccccCCC
Confidence 3456799999999999999999999653211100000000 11222334567788766 455555555555
Q ss_pred eEEEEEeccc
Q 023180 270 EKWVATKWIR 279 (286)
Q Consensus 270 ~K~i~~~Wi~ 279 (286)
.-+.-..|+.
T Consensus 346 ~~~~nv~~~~ 355 (415)
T KOG1971|consen 346 QPCPNVYWFP 355 (415)
T ss_pred CCCCceeeeh
Confidence 5555555553
No 81
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=27.65 E-value=40 Score=30.79 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=0.0
Q ss_pred cCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceec
Q 023180 178 SHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMF 214 (286)
Q Consensus 178 ~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~F 214 (286)
||.|.... ...-.+++|.-+.-..+||+|.|
T Consensus 96 wHtD~sy~------~~pp~~~~L~~~~~p~~GG~T~f 126 (277)
T PRK09553 96 WHTDVTFI------ETPPLGAILAAKQLPSTGGDTLW 126 (277)
T ss_pred CeecccCe------eCCCceeEEEEEecCCCCCccHh
No 82
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=27.23 E-value=51 Score=23.55 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=20.5
Q ss_pred chhHHHHHHHHHHHhhhhcccccc
Q 023180 13 GLPTALLLCSFFFLAGFYGSTFLS 36 (286)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~ 36 (286)
.+|.++|++++||.+|+..--.++
T Consensus 6 iiQii~l~AlI~~pLGyl~~~~~~ 29 (62)
T PF11120_consen 6 IIQIIILCALIFFPLGYLARRWLP 29 (62)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhH
Confidence 478889999999999999888775
No 83
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=26.16 E-value=1.2e+02 Score=22.40 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=22.4
Q ss_pred cEEEecCcccEEEeeecCCCCCCCCCCcccccccccce
Q 023180 233 GLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGE 270 (286)
Q Consensus 233 ~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~ 270 (286)
.+.+.-..|....|.| ...|.++|+..|.
T Consensus 26 ~v~~~~~~g~~~A~~~---------~CpH~g~~l~~~~ 54 (97)
T PF00355_consen 26 LVLVRRSDGEIYAFSN---------RCPHQGCPLSEGP 54 (97)
T ss_dssp EEEEEETTTEEEEEES---------B-TTTSBBGGCSS
T ss_pred EEEEEeCCCCEEEEEc---------cCCccceeEccee
Confidence 4666677888888876 8999999998884
No 84
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=25.08 E-value=50 Score=27.99 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=17.3
Q ss_pred HHHhhCCCCCC-CCcceEEecCCCCccc
Q 023180 151 IARATMLPQTH-GEAFNVLRYEIGQKYD 177 (286)
Q Consensus 151 i~~~~glp~~~-~E~lqv~rY~~G~~y~ 177 (286)
|.+--++|... ...+.|.=+.-|+-|.
T Consensus 67 l~~KY~ip~~~~~g~f~V~iw~fG~GY~ 94 (157)
T PF06092_consen 67 LKEKYNIPEPDSDGWFTVTIWDFGDGYK 94 (157)
T ss_pred HHHhcCCCCCCCCCCEEEEEEEcCCCeE
Confidence 44445677543 4567777777777776
No 85
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=24.80 E-value=1.1e+02 Score=22.85 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=16.0
Q ss_pred CcccEEEeeecCCCCCCCCCCcccccccccc
Q 023180 239 RRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 269 (286)
Q Consensus 239 ~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 269 (286)
..|....|.| ...|.++|+..|
T Consensus 29 ~~g~~~A~~~---------~CpH~g~~L~~g 50 (95)
T cd03478 29 QGGEVHAIGA---------KCPHYGAPLAKG 50 (95)
T ss_pred ECCEEEEEcC---------cCcCCCCccCCC
Confidence 3566666654 899999998765
No 86
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=24.25 E-value=42 Score=32.94 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=18.6
Q ss_pred cEEEe-cCcccEEEeeecCCCCCCCCCCcccccccccceEEEEEeccc
Q 023180 233 GLKVK-PRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATKWIR 279 (286)
Q Consensus 233 ~l~V~-P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~Wi~ 279 (286)
-+.|+ -++|+.|+|.. .+.|++.++..|..+....+|-
T Consensus 318 mv~iP~v~PGD~V~WHc---------D~iH~Vd~~h~g~~~ssV~Yip 356 (416)
T PF07350_consen 318 MVSIPDVEPGDYVFWHC---------DLIHAVDPEHNGKGDSSVMYIP 356 (416)
T ss_dssp -EE---B-TT-EEEEET---------T--EEE--BSS-SS---EEE--
T ss_pred cccCCCCCCCCeEEEeC---------CccccccccCCCCCCCCeeEec
Confidence 45565 46899999964 8999999999998877666553
No 87
>PF05293 ASFV_L11L: African swine fever virus (ASFV) L11L protein; InterPro: IPR007957 L11L is an integral membrane protein of the African swine fever virus, which is expressed late in the virus replication cycle. The protein is thought to be non-essential for growth in vitro and for virus virulence in domestic pigs [].
Probab=23.48 E-value=53 Score=23.58 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.0
Q ss_pred ccchhHHHHHHHHHHHhhhhcccccc
Q 023180 11 KLGLPTALLLCSFFFLAGFYGSTFLS 36 (286)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (286)
||.--++||-|+||.|--|+.+..+-
T Consensus 28 klitialflgclffilrdfcfppmlw 53 (78)
T PF05293_consen 28 KLITIALFLGCLFFILRDFCFPPMLW 53 (78)
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHH
Confidence 78888999999999999988776553
No 88
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=23.15 E-value=77 Score=18.47 Aligned_cols=13 Identities=38% Similarity=0.644 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhh
Q 023180 16 TALLLCSFFFLAG 28 (286)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (286)
.+|+++.+|.|+|
T Consensus 10 il~~l~a~~~Lag 22 (25)
T PF08139_consen 10 ILFPLLALFMLAG 22 (25)
T ss_pred HHHHHHHHHHHhh
Confidence 3455566666776
No 89
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=22.81 E-value=1.5e+02 Score=23.96 Aligned_cols=65 Identities=11% Similarity=-0.004 Sum_probs=43.2
Q ss_pred ceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccE-EEecCcccEEEeeecCCCCCCCCCCcccccccccceE-
Q 023180 194 QRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGL-KVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGEK- 271 (286)
Q Consensus 194 ~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l-~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~K- 271 (286)
.+.+..+..+++..+|+...|-... ..+ .++-..|..-.|.| .+.|.|.|+..|.-
T Consensus 15 ~~~W~~v~~~~el~~~~~~~~~v~g-------------~~ivl~r~~~G~v~A~~n---------~CpHrga~L~~G~~~ 72 (134)
T cd04338 15 REEWYPLYLLKDVPTDAPLGLSVYD-------------EPFVLFRDQNGQLRCLED---------RCPHRLAKLSEGQLI 72 (134)
T ss_pred ccCcEEEEEHHHCCCCCCEEEEECC-------------ceEEEEEcCCCCEEEEcC---------cCCCCcCcccCCeec
Confidence 4567888889999888866654321 223 34456788888866 79999999888742
Q ss_pred -EEEEecccc
Q 023180 272 -WVATKWIRD 280 (286)
Q Consensus 272 -~i~~~Wi~~ 280 (286)
=.++..+|.
T Consensus 73 ~~~i~CP~Hg 82 (134)
T cd04338 73 DGKLECLYHG 82 (134)
T ss_pred CCEEEccCCC
Confidence 145555544
No 90
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=22.68 E-value=1.2e+02 Score=24.14 Aligned_cols=62 Identities=11% Similarity=0.047 Sum_probs=36.9
Q ss_pred EEEeccCCCCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccce---EEEEE
Q 023180 199 FLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGE---KWVAT 275 (286)
Q Consensus 199 ~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~---K~i~~ 275 (286)
.+.-+++..++|....-...+. .-+-++...|..-.|.| ...|+|+++..|. .=.++
T Consensus 3 ~v~~~~elp~~g~~~~~~~~~~-----------~i~l~r~~~g~v~A~~n---------~C~Hrg~~L~~g~~~~~~~i~ 62 (123)
T cd03542 3 YLAHESQIPNNNDYFTTTIGRQ-----------PVVITRDKDGELNAFIN---------ACSHRGAMLCRRKQGNKGTFT 62 (123)
T ss_pred EeEEHHHCCCCCCEEEEEECCc-----------EEEEEECCCCCEEEEcc---------cCcCCCCccccccccCCCEEE
Confidence 3445677777665433211110 23456667888888877 7899999987652 22455
Q ss_pred ecccc
Q 023180 276 KWIRD 280 (286)
Q Consensus 276 ~Wi~~ 280 (286)
..+|.
T Consensus 63 CP~Hg 67 (123)
T cd03542 63 CPFHG 67 (123)
T ss_pred CcCCC
Confidence 55543
No 91
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=22.04 E-value=99 Score=19.76 Aligned_cols=10 Identities=50% Similarity=0.806 Sum_probs=4.2
Q ss_pred ccCCCCCCCCC
Q 023180 35 LSRDVPSIRPK 45 (286)
Q Consensus 35 ~~~~~~~~~~~ 45 (286)
+|+| ++++|.
T Consensus 24 lsnD-P~RnP~ 33 (38)
T PRK02655 24 LSSD-PTRNPG 33 (38)
T ss_pred CCCC-CCCCCC
Confidence 3433 444443
No 92
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=21.80 E-value=1.2e+02 Score=24.05 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=32.6
Q ss_pred EEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccc
Q 023180 197 ASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 269 (286)
Q Consensus 197 ~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 269 (286)
+..+.-+++..++|...+-...+ ..-+.++-..|..-.|.| ...|.|+|+..|
T Consensus 3 w~~v~~~~el~~~g~~~~~~~~~-----------~~iiv~r~~~g~~~A~~n---------~CpHrg~~L~~g 55 (123)
T cd03535 3 WVFLGHESEIPNAGDYVVRYIGD-----------DSFIVCRDEDGEIRAMFN---------SCRHRGMQVCRA 55 (123)
T ss_pred CEEEEEHHHCCCCCCEEEEEECC-----------eEEEEEECCCCCEEEEcc---------cCccCCCEeecc
Confidence 34445567777766555432111 012345556788778876 789999998865
No 93
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.55 E-value=59 Score=27.62 Aligned_cols=34 Identities=12% Similarity=-0.141 Sum_probs=16.0
Q ss_pred CCCcccccccccchhHHHHHHHHHHHhhhhcccc
Q 023180 1 MKGKAKRSSTKLGLPTALLLCSFFFLAGFYGSTF 34 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (286)
|+.|.++.-.-+.+-.+.+++..++++.++.+++
T Consensus 1 M~~~r~rRl~~v~~~~~~~~~a~~Lvl~al~~n~ 34 (159)
T PRK13150 1 MNLRRKNRLWVVCAVLAGLGLTTALVLYALRANI 34 (159)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 6544433111334444445555555555555543
No 94
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=21.43 E-value=1.2e+02 Score=24.42 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=39.6
Q ss_pred eEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccce---E
Q 023180 195 RLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKGE---K 271 (286)
Q Consensus 195 R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G~---K 271 (286)
+.+..+..++++.++|....-...+. .-+-++...|..-.|.| ...|.|+|+..|. +
T Consensus 7 ~~W~~v~~~~el~~~g~~~~~~~~~~-----------~i~l~r~~~g~i~A~~n---------~C~Hrg~~L~~g~~g~~ 66 (128)
T cd03472 7 RSWLLLGHETHIPKAGDYLTTYMGED-----------PVIVVRQKDGSIRVFLN---------QCRHRGMRICRSDAGNA 66 (128)
T ss_pred CCCeEeEEHHHCCCCCCEEEEEECCc-----------eEEEEECCCCCEEEEhh---------hCcCCCCeeeccCCCCc
Confidence 34566677888877665322111110 12456677888888877 7999999997653 1
Q ss_pred EEEEecccc
Q 023180 272 WVATKWIRD 280 (286)
Q Consensus 272 ~i~~~Wi~~ 280 (286)
=.++.-+|.
T Consensus 67 ~~i~CP~Hg 75 (128)
T cd03472 67 KAFTCTYHG 75 (128)
T ss_pred CEEECCcCC
Confidence 244554443
No 95
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=21.33 E-value=40 Score=25.35 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=11.5
Q ss_pred cCCCCHHHHHHHHH
Q 023180 88 PNFASAEQCQSIIA 101 (286)
Q Consensus 88 ~nfLs~eEC~~li~ 101 (286)
++|+|.+||+.|..
T Consensus 26 ~G~is~~Ecd~Ir~ 39 (81)
T cd08788 26 RGFFSSYDCDEIRL 39 (81)
T ss_pred cCCccHhhcchhhc
Confidence 68899999998854
No 96
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=21.28 E-value=1.7e+02 Score=23.47 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=39.1
Q ss_pred ceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEecCcccEEEeeecCCCCCCCCCCcccccccccc
Q 023180 194 QRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGDGLLFYSLFPNGTIDRTSLHGSCPVIKG 269 (286)
Q Consensus 194 ~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~allF~n~~~~g~~D~~~lH~g~PV~~G 269 (286)
.+.+..+..+++..+|.-+.|..... .-+-++-..|+.-.|.| .+.|.|+|+..|
T Consensus 15 ~~~W~~v~~~~el~~g~~~~~~v~g~------------~l~l~r~~~g~v~A~~n---------~CpH~g~~L~~G 69 (129)
T cd04337 15 RNFWYPVEFSKDLKMDTMVPFELFGQ------------PWVLFRDEDGTPGCIRD---------ECAHRACPLSLG 69 (129)
T ss_pred hCccEEEEEHHHCCCCCeEEEEECCc------------EEEEEECCCCcEEEEeC---------cCCCCcCCcccC
Confidence 35567777788888887777754221 12455667788888876 799999999877
No 97
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=21.13 E-value=1.5e+02 Score=21.13 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=24.6
Q ss_pred cccccccEEeecCCCEEEecCCCCHHHHHHHHHHHh
Q 023180 69 SIQSIPFQVLSWRPRALYFPNFASAEQCQSIIATAK 104 (286)
Q Consensus 69 ~~~~~p~~~ls~~P~I~~~~nfLs~eEC~~li~~a~ 104 (286)
-++..|+. .....++.+..|+++++.+.|.+...
T Consensus 50 IitT~~l~--~~~~pvi~i~~~l~~~d~~~i~~~i~ 83 (85)
T cd05568 50 IISTVPLE--DTDKPVIVVSPILTEEDIKKIRKFIK 83 (85)
T ss_pred EEEccccC--CCCCCEEEECCCCCHHHHHHHHHHHh
Confidence 34444554 23345899999999999999988764
No 98
>PF06643 DUF1158: Protein of unknown function (DUF1158); InterPro: IPR010590 This family consists of several enterobacterial YbdJ proteins. The function of this family is unknown
Probab=20.75 E-value=87 Score=23.11 Aligned_cols=18 Identities=28% Similarity=0.582 Sum_probs=14.5
Q ss_pred chhHHHHHHHHHHHhhhh
Q 023180 13 GLPTALLLCSFFFLAGFY 30 (286)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ 30 (286)
+--|.++.|+-|+++|+.
T Consensus 48 nQlYTl~FClWFLlLGai 65 (82)
T PF06643_consen 48 NQLYTLVFCLWFLLLGAI 65 (82)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 344778999999999985
No 99
>PF10161 DDDD: Putative mitochondrial precursor protein; InterPro: IPR018782 This entry represents a family of small conserved proteins found from nematodes to humans. The C-terminal region is rich in asparagine. These proteins have been putatively designated as mitochondrial precursor proteins but this has not been confirmed.
Probab=20.52 E-value=26 Score=26.22 Aligned_cols=25 Identities=20% Similarity=0.054 Sum_probs=22.0
Q ss_pred ccccchhHHHHHHHHHHHhhhhccc
Q 023180 9 STKLGLPTALLLCSFFFLAGFYGST 33 (286)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (286)
.+++++..++.+|+-++++|++.|-
T Consensus 34 ~~~fgl~~v~~vvip~l~~Ga~isk 58 (79)
T PF10161_consen 34 KMPFGLLRVLAVVIPGLYLGATISK 58 (79)
T ss_pred cccchhheeeeeeccHHHHHHHHHH
Confidence 4589999999999999999998875
No 100
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=20.25 E-value=4e+02 Score=22.20 Aligned_cols=78 Identities=18% Similarity=0.054 Sum_probs=44.7
Q ss_pred CcceEEecCCCCccccCccCCCCCCCCCCCCceEEEEEEeccCCCCCcceecccCCCcccCCCCCccccccEEEecCccc
Q 023180 163 EAFNVLRYEIGQKYDSHYDAFNPAEYGPQMSQRLASFLLYLSDVEEGGETMFPFENGIFLDSGYDYKKCIGLKVKPRRGD 242 (286)
Q Consensus 163 E~lqv~rY~~G~~y~~H~D~~~~~~~~~~~~~R~~T~liYLndv~eGGeT~Fp~~~~~~~~~~~~~~~~~~l~V~P~~G~ 242 (286)
....+.+-.+|.+..+|.|.... .+++.+=|..+ .+|....- .+-.+.=+.|.
T Consensus 80 ~~~~~s~l~pg~~I~pH~d~~~~----------~lR~Hl~L~~p-~~~~~~~v----------------~~~~~~w~~G~ 132 (163)
T PF05118_consen 80 GRVRFSRLPPGTHIKPHRDPTNL----------RLRLHLPLIVP-NPGCYIRV----------------GGETRHWREGE 132 (163)
T ss_dssp EEEEEEEEECTEEEEEE-SS-TT----------EEEEEEEEC---STTEEEEE----------------TTEEEB--CTE
T ss_pred hhEEEEEECCCCEECCeeCCCCc----------ceEEEEEEEcC-CCCeEEEE----------------CCeEEEeccCc
Confidence 44677788899999999997532 15555555543 22322211 34566778899
Q ss_pred EEEeeecCCCCCCCCCCcccccccccceEEEEEe
Q 023180 243 GLLFYSLFPNGTIDRTSLHGSCPVIKGEKWVATK 276 (286)
Q Consensus 243 allF~n~~~~g~~D~~~lH~g~PV~~G~K~i~~~ 276 (286)
+++|. ....|++---....++++-.
T Consensus 133 ~~~fD---------~s~~H~~~N~~~~~Rv~L~v 157 (163)
T PF05118_consen 133 CWVFD---------DSFEHEVWNNGDEDRVVLIV 157 (163)
T ss_dssp EEEE----------TTS-EEEEESSSS-EEEEEE
T ss_pred EEEEe---------CCEEEEEEeCCCCCEEEEEE
Confidence 99994 57888876655566776643
No 101
>PF08510 PIG-P: PIG-P; InterPro: IPR013717 PIG-P (phosphatidylinositol N-acetylglucosaminyltransferase subunit P) is an enzyme involved in GPI anchor biosynthesis [].
Probab=20.22 E-value=58 Score=26.28 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=23.9
Q ss_pred ccccchhHHHHHHHHHHHhhhhcccccc
Q 023180 9 STKLGLPTALLLCSFFFLAGFYGSTFLS 36 (286)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (286)
++-+.+|..++++++|...+.++-++..
T Consensus 44 yWAlaiP~~~l~~~l~~~~~y~~~N~~~ 71 (126)
T PF08510_consen 44 YWALAIPSWLLMAMLFTYVGYPAYNLVL 71 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3478899999999999999999888865
Done!