BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023181
         (286 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QGT|C Chain C, Human Hepatitis B Viral Capsid (Hbcag)
 pdb|1QGT|D Chain D, Human Hepatitis B Viral Capsid (Hbcag)
 pdb|1QGT|B Chain B, Human Hepatitis B Viral Capsid (Hbcag)
 pdb|1QGT|A Chain A, Human Hepatitis B Viral Capsid (Hbcag)
          Length = 149

 Score = 31.6 bits (70), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 151 DNENSLSRKRVRYCKICKAHVEGFDHHCPAFGNCIVVGK--SQNFDKSQSENDWVVNLAT 208
           D  ++L R+ +   + C  H          +G  + +      N +   S  D VVN   
Sbjct: 32  DTASALYREALESPEHCSPHHTALRQAILCWGELMTLATWVGNNLEDPASR-DLVVNYVN 90

Query: 209 STMLFSILQLLWQAVFFMWHIYCVCFNVRT 238
           + M   I QLLW      +HI C+ F   T
Sbjct: 91  TNMGLKIRQLLW------FHISCLTFGRET 114


>pdb|3MDU|A Chain A, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
           From Pseudomonas Aeruginosa Complexed With
           N-Guanidino-L-Glutamate
 pdb|3MDW|A Chain A, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
           From Pseudomonas Aeruginosa Complexed With
           N-Formimino-L-Aspartate
 pdb|3MDW|B Chain B, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
           From Pseudomonas Aeruginosa Complexed With
           N-Formimino-L-Aspartate
 pdb|3MDW|C Chain C, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
           From Pseudomonas Aeruginosa Complexed With
           N-Formimino-L-Aspartate
 pdb|3MDW|D Chain D, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
           From Pseudomonas Aeruginosa Complexed With
           N-Formimino-L-Aspartate
          Length = 453

 Score = 28.5 bits (62), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 116 IIGLCSIMSKDPGLITNEFPHLDKLVEGSELGVDPDNENSLS 157
           + GLC  +S +  L    FP  D L +G  LG+  D+  SLS
Sbjct: 287 VAGLC--LSTEANLGDGIFPATDFLAQGGRLGIGSDSHVSLS 326


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.141    0.465 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,998,464
Number of Sequences: 62578
Number of extensions: 302766
Number of successful extensions: 725
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 725
Number of HSP's gapped (non-prelim): 4
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.3 bits)