Query 023181
Match_columns 286
No_of_seqs 237 out of 1428
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 17:42:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 75.4 1.5 5.2E-05 28.8 2.0 27 146-172 18-44 (56)
2 1z2q_A LM5-1; membrane protein 71.8 3 0.0001 29.6 3.1 26 146-171 20-47 (84)
3 1x4u_A Zinc finger, FYVE domai 71.3 2.6 8.8E-05 30.0 2.7 25 146-170 13-39 (84)
4 2yw8_A RUN and FYVE domain-con 65.6 3.2 0.00011 29.3 2.2 25 147-171 19-45 (82)
5 3j21_g 50S ribosomal protein L 63.5 1.3 4.6E-05 28.6 -0.2 28 146-173 13-40 (51)
6 1vfy_A Phosphatidylinositol-3- 61.7 3 0.0001 28.8 1.4 24 148-171 12-37 (73)
7 1dvp_A HRS, hepatocyte growth 58.6 3.7 0.00013 34.6 1.6 24 148-171 162-187 (220)
8 3zyq_A Hepatocyte growth facto 58.5 8.5 0.00029 32.5 3.9 24 148-171 165-190 (226)
9 1joc_A EEA1, early endosomal a 58.2 3.6 0.00012 31.6 1.4 25 147-171 69-95 (125)
10 1wfk_A Zinc finger, FYVE domai 57.5 5.4 0.00018 28.6 2.1 24 147-170 9-34 (88)
11 1wfl_A Zinc finger protein 216 56.4 14 0.00049 25.6 4.0 35 147-182 25-64 (74)
12 1y02_A CARP2, FYVE-ring finger 55.3 4 0.00014 31.3 1.1 23 148-170 20-44 (120)
13 3t7l_A Zinc finger FYVE domain 49.1 6.1 0.00021 28.4 1.3 24 148-171 21-46 (90)
14 2pzo_E CAP-Gly domain-containi 41.2 6.3 0.00022 24.1 0.2 10 146-155 19-28 (42)
15 2dkt_A Ring finger and CHY zin 36.5 6.3 0.00021 31.1 -0.4 28 146-173 82-110 (143)
16 2cr8_A MDM4 protein; ZF-ranbp 35.1 16 0.00054 23.5 1.4 21 149-169 13-33 (53)
17 2c6a_A Ubiquitin-protein ligas 31.8 19 0.00066 22.5 1.4 22 148-169 14-35 (46)
18 3mpx_A FYVE, rhogef and PH dom 27.7 13 0.00044 34.1 0.0 21 149-169 377-399 (434)
19 2vrw_B P95VAV, VAV1, proto-onc 27.1 22 0.00074 32.3 1.5 26 146-171 356-384 (406)
20 1wil_A KIAA1045 protein; ring 27.0 63 0.0022 23.0 3.5 25 146-170 14-38 (89)
21 2elu_A Zinc finger protein 406 26.3 14 0.00046 21.4 -0.1 8 162-169 10-17 (37)
22 3gj3_B Nuclear pore complex pr 24.5 36 0.0012 19.6 1.6 19 150-168 10-28 (33)
23 2jrp_A Putative cytoplasmic pr 23.0 28 0.00097 24.5 1.1 18 150-168 21-38 (81)
24 1h7d_A Aminolevulinic acid syn 23.0 31 0.0011 21.9 1.1 13 172-184 5-17 (49)
25 3u5e_m 60S ribosomal protein L 22.9 30 0.001 26.1 1.3 24 147-170 93-118 (128)
26 2pg3_A Queuosine biosynthesis 22.5 20 0.00068 29.8 0.2 18 157-174 191-208 (232)
27 3jyw_9 60S ribosomal protein L 22.0 52 0.0018 22.6 2.2 27 146-172 25-55 (72)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=75.38 E-value=1.5 Score=28.81 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCcccc
Q 023181 146 LGVDPDNENSLSRKRVRYCKICKAHVE 172 (286)
Q Consensus 146 ~~~~C~~C~~~kP~RskHC~~C~~CV~ 172 (286)
....|..|..+-|+|+.-|+.|+..-+
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~L 44 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNL 44 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCE
T ss_pred chhhhccccCcCCcccccccCCCCCCC
Confidence 347899999999999999998886543
No 2
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=71.83 E-value=3 Score=29.62 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=19.2
Q ss_pred CCCCCCCCCCC--CCCCCCCCcccCccc
Q 023181 146 LGVDPDNENSL--SRKRVRYCKICKAHV 171 (286)
Q Consensus 146 ~~~~C~~C~~~--kP~RskHC~~C~~CV 171 (286)
....|..|... .-.|-|||+.|++-+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEE
Confidence 34678888875 345889999998743
No 3
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.31 E-value=2.6 Score=29.96 Aligned_cols=25 Identities=16% Similarity=0.107 Sum_probs=18.8
Q ss_pred CCCCCCCCCCC--CCCCCCCCcccCcc
Q 023181 146 LGVDPDNENSL--SRKRVRYCKICKAH 170 (286)
Q Consensus 146 ~~~~C~~C~~~--kP~RskHC~~C~~C 170 (286)
....|..|... .-.|-|||+.|++-
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcE
Confidence 34678888865 45688999999874
No 4
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=65.65 E-value=3.2 Score=29.33 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=18.4
Q ss_pred CCCCCCCCCC--CCCCCCCCcccCccc
Q 023181 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (286)
Q Consensus 147 ~~~C~~C~~~--kP~RskHC~~C~~CV 171 (286)
...|..|... --.|-|||+.||+-+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEE
Confidence 4678888865 345889999998743
No 5
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=63.47 E-value=1.3 Score=28.61 Aligned_cols=28 Identities=7% Similarity=-0.063 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCccccc
Q 023181 146 LGVDPDNENSLSRKRVRYCKICKAHVEG 173 (286)
Q Consensus 146 ~~~~C~~C~~~kP~RskHC~~C~~CV~r 173 (286)
..+.|..|..+.|.+...|+.|+.--+|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 3478999999999999999999875433
No 6
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=61.69 E-value=3 Score=28.76 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=17.2
Q ss_pred CCCCCCCCC--CCCCCCCCcccCccc
Q 023181 148 VDPDNENSL--SRKRVRYCKICKAHV 171 (286)
Q Consensus 148 ~~C~~C~~~--kP~RskHC~~C~~CV 171 (286)
.-|..|... .-.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 358888765 345889999998743
No 7
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=58.59 E-value=3.7 Score=34.56 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=17.5
Q ss_pred CCCCCCCCC--CCCCCCCCcccCccc
Q 023181 148 VDPDNENSL--SRKRVRYCKICKAHV 171 (286)
Q Consensus 148 ~~C~~C~~~--kP~RskHC~~C~~CV 171 (286)
.-|..|... --.|-|||+.||+.+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 568888754 345889999988754
No 8
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=58.53 E-value=8.5 Score=32.51 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=16.6
Q ss_pred CCCCCCCCC--CCCCCCCCcccCccc
Q 023181 148 VDPDNENSL--SRKRVRYCKICKAHV 171 (286)
Q Consensus 148 ~~C~~C~~~--kP~RskHC~~C~~CV 171 (286)
.-|..|... .-.|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 468888754 234778899888753
No 9
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=58.19 E-value=3.6 Score=31.58 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=18.3
Q ss_pred CCCCCCCCCC--CCCCCCCCcccCccc
Q 023181 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (286)
Q Consensus 147 ~~~C~~C~~~--kP~RskHC~~C~~CV 171 (286)
...|..|... .-.|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 3568888765 346889999998743
No 10
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=57.46 E-value=5.4 Score=28.64 Aligned_cols=24 Identities=17% Similarity=-0.000 Sum_probs=17.9
Q ss_pred CCCCCCCCCC--CCCCCCCCcccCcc
Q 023181 147 GVDPDNENSL--SRKRVRYCKICKAH 170 (286)
Q Consensus 147 ~~~C~~C~~~--kP~RskHC~~C~~C 170 (286)
...|..|... .-.|-|||+.|++-
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCE
Confidence 3568888865 34688999999874
No 11
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=56.42 E-value=14 Score=25.62 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCCCCCCCcccCc--cc-ccC--CCcccccc
Q 023181 147 GVDPDNENSLSRKRVRYCKICKA--HV-EGF--DHHCPAFG 182 (286)
Q Consensus 147 ~~~C~~C~~~kP~RskHC~~C~~--CV-~rf--DHHCpWi~ 182 (286)
.+-|..|+...-+=...|+ |+. |- .|+ ||.|++-+
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDy 64 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDY 64 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCG
T ss_pred CCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchh
Confidence 4679999987444457787 665 22 233 89888654
No 12
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=55.25 E-value=4 Score=31.25 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=17.6
Q ss_pred CCCCCCCCC--CCCCCCCCcccCcc
Q 023181 148 VDPDNENSL--SRKRVRYCKICKAH 170 (286)
Q Consensus 148 ~~C~~C~~~--kP~RskHC~~C~~C 170 (286)
..|..|... -..|-|||+.||+.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 568888765 34588999999874
No 13
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=49.05 E-value=6.1 Score=28.41 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=17.0
Q ss_pred CCCCCCCCC--CCCCCCCCcccCccc
Q 023181 148 VDPDNENSL--SRKRVRYCKICKAHV 171 (286)
Q Consensus 148 ~~C~~C~~~--kP~RskHC~~C~~CV 171 (286)
..|..|... --.|-|||+.||+-+
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CcCcCCCCcccchhhCccccCCCCEE
Confidence 568888754 334789999888743
No 14
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=41.22 E-value=6.3 Score=24.11 Aligned_cols=10 Identities=0% Similarity=-0.499 Sum_probs=5.8
Q ss_pred CCCCCCCCCC
Q 023181 146 LGVDPDNENS 155 (286)
Q Consensus 146 ~~~~C~~C~~ 155 (286)
.+.||..|.+
T Consensus 19 eRpYCd~CEv 28 (42)
T 2pzo_E 19 ERPYCEICEM 28 (42)
T ss_dssp --CEETTTTE
T ss_pred CCcccccccc
Confidence 4577888763
No 15
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=36.46 E-value=6.3 Score=31.08 Aligned_cols=28 Identities=14% Similarity=0.093 Sum_probs=16.1
Q ss_pred CCCCCCCCCCCCCC-CCCCCcccCccccc
Q 023181 146 LGVDPDNENSLSRK-RVRYCKICKAHVEG 173 (286)
Q Consensus 146 ~~~~C~~C~~~kP~-RskHC~~C~~CV~r 173 (286)
...||..|+.+.+. ...||..||-|-..
T Consensus 82 ~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G 110 (143)
T 2dkt_A 82 GEYYCSICHLFDKDKRQYHCESCGICRIG 110 (143)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEEES
T ss_pred eeeEeceeecccCCCceecCCCCCceecc
Confidence 34568888876433 23456666555543
No 16
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=35.10 E-value=16 Score=23.45 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCCCCCcccCc
Q 023181 149 DPDNENSLSRKRVRYCKICKA 169 (286)
Q Consensus 149 ~C~~C~~~kP~RskHC~~C~~ 169 (286)
-|..|+..-|+--.||..|-+
T Consensus 13 kC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 13 QCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp ECSSSCCEECSSCCBCTTTCC
T ss_pred ecccccccCCCccchhHHHHH
Confidence 377787777777777776644
No 17
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=31.82 E-value=19 Score=22.51 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCCCCcccCc
Q 023181 148 VDPDNENSLSRKRVRYCKICKA 169 (286)
Q Consensus 148 ~~C~~C~~~kP~RskHC~~C~~ 169 (286)
-.|..|+..-|+--.||..|-+
T Consensus 14 WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 14 WKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTCC
T ss_pred EecccccccCCCccchhhHHHh
Confidence 4488888887777778777654
No 18
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=27.66 E-value=13 Score=34.13 Aligned_cols=21 Identities=19% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCCCCCCC--CCCCCCCCcccCc
Q 023181 149 DPDNENSL--SRKRVRYCKICKA 169 (286)
Q Consensus 149 ~C~~C~~~--kP~RskHC~~C~~ 169 (286)
-|..|... .-.|-|||+.||+
T Consensus 377 ~c~~c~~~f~~~~r~h~Cr~Cg~ 399 (434)
T 3mpx_A 377 MCMNCGCDFSLTLRRHHCHACGK 399 (434)
T ss_dssp -----------------------
T ss_pred cCCCcCCCCCCcchhhhcccCcC
Confidence 36666543 2235566766665
No 19
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=27.10 E-value=22 Score=32.33 Aligned_cols=26 Identities=15% Similarity=0.051 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCC---CCCCCCCcccCccc
Q 023181 146 LGVDPDNENSLS---RKRVRYCKICKAHV 171 (286)
Q Consensus 146 ~~~~C~~C~~~k---P~RskHC~~C~~CV 171 (286)
...+|..|...- --|-+||+.|+..|
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~ 384 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPA 384 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEE
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCcc
Confidence 347899998653 34788998886533
No 20
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=27.00 E-value=63 Score=22.98 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCCCCCCCCCcccCcc
Q 023181 146 LGVDPDNENSLSRKRVRYCKICKAH 170 (286)
Q Consensus 146 ~~~~C~~C~~~kP~RskHC~~C~~C 170 (286)
.+..|..|..+...--.-|++|+|+
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rv 38 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRV 38 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSC
T ss_pred CCcccCccccccccceecccccccc
Confidence 3478999998886666779999986
No 21
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=26.33 E-value=14 Score=21.38 Aligned_cols=8 Identities=38% Similarity=1.198 Sum_probs=6.2
Q ss_pred CCCcccCc
Q 023181 162 RYCKICKA 169 (286)
Q Consensus 162 kHC~~C~~ 169 (286)
.||+.|++
T Consensus 10 qhcrfckk 17 (37)
T 2elu_A 10 QHCRFCKK 17 (37)
T ss_dssp CEETTTTE
T ss_pred HHHHHHHH
Confidence 58888876
No 22
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=24.49 E-value=36 Score=19.62 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCCCCcccC
Q 023181 150 PDNENSLSRKRVRYCKICK 168 (286)
Q Consensus 150 C~~C~~~kP~RskHC~~C~ 168 (286)
|..|..+-++.+.+|..|+
T Consensus 10 C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 10 CDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp CTTTCCEECTTCSBCTTTC
T ss_pred CCcccCCCccccCEEcccC
Confidence 7778777777777777775
No 23
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=23.03 E-value=28 Score=24.54 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCCCCcccC
Q 023181 150 PDNENSLSRKRVRYCKICK 168 (286)
Q Consensus 150 C~~C~~~kP~RskHC~~C~ 168 (286)
|..|...-+..+ .|..|+
T Consensus 21 C~~C~~~~~~~a-fCPeCg 38 (81)
T 2jrp_A 21 CETCAKDFSLQA-LCPDCR 38 (81)
T ss_dssp CTTTCCEEEEEE-ECSSSC
T ss_pred CccccccCCCcc-cCcchh
Confidence 444444433333 444443
No 24
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=22.96 E-value=31 Score=21.91 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=10.4
Q ss_pred ccCCCccccccCe
Q 023181 172 EGFDHHCPAFGNC 184 (286)
Q Consensus 172 ~rfDHHCpWi~nC 184 (286)
+.++|+||+++-+
T Consensus 5 a~~l~~CPFL~R~ 17 (49)
T 1h7d_A 5 AMLLRSCPVLSQG 17 (49)
T ss_dssp SCSCCSCCCCSSC
T ss_pred hhhhccCCchhcC
Confidence 4678999999865
No 25
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=22.92 E-value=30 Score=26.08 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCCCCCCCcc--cCcc
Q 023181 147 GVDPDNENSLSRKRVRYCKI--CKAH 170 (286)
Q Consensus 147 ~~~C~~C~~~kP~RskHC~~--C~~C 170 (286)
...|..|..+-|+|++.|+. |+..
T Consensus 93 ~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 93 KSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp CEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred eEeeccccccCCchhhccchhhCCCc
Confidence 47899999999999999994 8654
No 26
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=22.49 E-value=20 Score=29.79 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=14.3
Q ss_pred CCCCCCCCcccCcccccC
Q 023181 157 SRKRVRYCKICKAHVEGF 174 (286)
Q Consensus 157 kP~RskHC~~C~~CV~rf 174 (286)
.+.|.+||..|..|..|.
T Consensus 191 ~~~~~~~CG~C~~C~~r~ 208 (232)
T 2pg3_A 191 NGIKGDGCGQCAACHLRA 208 (232)
T ss_dssp TSCCTTTTSCSHHHHHHH
T ss_pred CCCCCCcCCcCHhHHHHH
Confidence 455568999999998764
No 27
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=21.97 E-value=52 Score=22.63 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCCCCCC----CCCcccCcccc
Q 023181 146 LGVDPDNENSLSRKRV----RYCKICKAHVE 172 (286)
Q Consensus 146 ~~~~C~~C~~~kP~Rs----kHC~~C~~CV~ 172 (286)
....|+.|...+-.|. .||+.|++=++
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVA 55 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCCCCC
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCCEEe
Confidence 3467999987776664 58999887665
Done!