BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023183
MESLSCVSCPFFVTHHQPYPFAGQLSTTRARLRSALKVNATSLVVPLLPFNINEVLVPSE
SKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERL
DIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNS
LEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSEL
VKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQALEMQ

High Scoring Gene Products

Symbol, full name Information P value
AT1G35340 protein from Arabidopsis thaliana 1.2e-72

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023183
        (286 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2206732 - symbol:AT1G35340 species:3702 "Arabi...   734  1.2e-72   1


>TAIR|locus:2206732 [details] [associations]
            symbol:AT1G35340 species:3702 "Arabidopsis thaliana"
            [GO:0004176 "ATP-dependent peptidase activity" evidence=IEA;ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0006508 "proteolysis"
            evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM;IDA]
            InterPro:IPR003111 Pfam:PF02190 EMBL:CP002684 GO:GO:0009507
            GO:GO:0006508 InterPro:IPR015947 SUPFAM:SSF88697 GO:GO:0004176
            EMBL:AK175372 IPI:IPI00526990 RefSeq:NP_174767.2 UniGene:At.43836
            ProteinModelPortal:Q682J5 STRING:Q682J5 PaxDb:Q682J5 PRIDE:Q682J5
            EnsemblPlants:AT1G35340.1 GeneID:840423 KEGG:ath:AT1G35340
            TAIR:At1g35340 eggNOG:NOG247227 HOGENOM:HOG000029631
            InParanoid:Q682J5 OMA:HNIGMIA PhylomeDB:Q682J5
            ProtClustDB:CLSN2680371 ArrayExpress:Q682J5 Genevestigator:Q682J5
            Uniprot:Q682J5
        Length = 316

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 157/287 (54%), Positives = 210/287 (73%)

Query:     5 SCVSCPFFVT---HHQPYPFAGQLSTTRARLRSALKVNATSLVVPLLPFNINEVLVPSES 61
             S +S  FF T   H    P      +   R R + K+ A SL +PLLPF+++EVLVP+ES
Sbjct:    31 SNLSSSFFPTQNIHRIRIPTTSIPGSFNIRARRS-KIVAKSLDLPLLPFSMSEVLVPTES 89

Query:    62 KIXXXXXXXXXXXXXXXXVRKK-LFVYFVLDPISISEYATEASFAARCGCLVLIENVERL 120
             K                  RKK +FV+F+LDPISISE ATEASFAAR GCLVLIENVERL
Sbjct:    90 KTLHLYEARYLALLEESMKRKKNMFVHFILDPISISETATEASFAARYGCLVLIENVERL 149

Query:   121 DIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTS-ASPSDVSSKVLSVKEAVYSLN 179
             D+GALVSIRG GRVKI +F  ADP+L GEV P+QD  +  S ++++SK+  +KE++ +LN
Sbjct:   150 DVGALVSIRGAGRVKISRFLGADPYLSGEVRPIQDRMNYESSNELTSKISQLKESIKNLN 209

Query:   180 SLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSE 239
             SLEIKLKAP ++ +QT ++NSL WAE +P +D DE+F+PSL ER+SF+AFQP+SGST+SE
Sbjct:   210 SLEIKLKAPADSPLQTRLINSLNWAEDEPPVDFDESFVPSLQERLSFSAFQPISGSTKSE 269

Query:   240 LVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQALEMQ 286
             L +LQQEK+KAMD++DT +RL  S+  ++ +IS +AAKLAIQ+L+++
Sbjct:   270 LSRLQQEKIKAMDMKDTIERLELSMGLIKENISSIAAKLAIQSLDIR 316


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.131   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      286       270   0.00097  114 3  11 22  0.47    33
                                                     32  0.40    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  163 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.91u 0.08s 22.99t   Elapsed:  00:00:02
  Total cpu time:  22.92u 0.08s 23.00t   Elapsed:  00:00:02
  Start:  Sat May 11 15:02:56 2013   End:  Sat May 11 15:02:58 2013

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