BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023183
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3A334|LON2_PELCD Lon protease 2 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd
1) GN=lon2 PE=3 SV=1
Length = 796
Score = 38.5 bits (88), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 14/143 (9%)
Query: 45 VPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFV---LDPISISEYATE 101
+P+ P + ++V+ P S L + + ++ L+EEAL +L V +DPI+ E
Sbjct: 13 LPVYPLH-DQVIFPHMSFPLFIGK-EHMGLVEEALRNNRLLVVLTVLAIDPITGREQF-- 68
Query: 102 ASFAARCGCLVLIENVERL-DIGALVSIRGVGRVKIVKFFQADPFLKGEV--IPMQDTTS 158
AR G + I V R + G + + GV RV+++ Q PF V IP ++ +
Sbjct: 69 ----ARVGTICRINQVLRFPEGGCKIILEGVNRVRLITTLQVTPFAMASVSLIPERENRN 124
Query: 159 ASPSDVSSKVLSVKEAVYSLNSL 181
+ + ++++ SL +
Sbjct: 125 SVAQALMQSIIALLRVAQSLGQM 147
>sp|A8Z5Z0|LON_SULMW Lon protease OS=Sulcia muelleri (strain GWSS) GN=lon PE=3 SV=1
Length = 855
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 121 DIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQD 155
D V ++G+ R KI+K Q P+ K E+I ++D
Sbjct: 167 DGNTTVILQGISRFKIIKLIQVYPYFKAEIIYLKD 201
>sp|B0S2N4|LON_FINM2 Lon protease OS=Finegoldia magna (strain ATCC 29328) GN=lon PE=3
SV=1
Length = 776
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 16/187 (8%)
Query: 61 SKILHLYEARYLAL--LEEALVRK-KLFVYFVLDPISISEYATEASFAARCGCLVLIENV 117
+ I H R ++L L +L+R ++F+ DP+ E T+ F G L I+
Sbjct: 25 NNIQHFEVGREVSLNALNASLLRNSEIFICTQKDPML--ENITKEDFY-HTGVLASIKQT 81
Query: 118 ERLDIGAL-VSIRGVGRVKIVKFFQADPFLKGEVIPMQ-DTTSASPSDVSSKVLSVKEAV 175
++ G + V + R KIV F + D FL+ V M+ D T P+D S + ++ +
Sbjct: 82 IKMPNGNIRVLVEAYDRAKIVDFVENDSFLEANVEVMEYDKTKYHPTDKS--LTMIRMII 139
Query: 176 YSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDE-AFIPSLAERVSFAAFQPVSG 234
S SL +K P + +LN E+ PS D A + SL ++ S + +
Sbjct: 140 SSFESLAEIIKKPLPQDLLGGLLN-----EEDPSSLIDTIAMLISLNDKDSILLLETLDM 194
Query: 235 STQSELV 241
+ ELV
Sbjct: 195 DERIELV 201
>sp|B3QSJ7|LON_CHLT3 Lon protease OS=Chloroherpeton thalassium (strain ATCC 35110 /
GB-78) GN=lon PE=3 SV=1
Length = 836
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 45 VPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASF 104
+P+LP N VL P + + R +ALLE +L V+ + I A
Sbjct: 41 LPVLPLR-NTVLFPDVIVPIGVARQRSIALLE-SLAPNSPVVFLMQTDADID--APTPDE 96
Query: 105 AARCGCLVLIENVERL-DIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQ--------- 154
+ G + L+ R+ D V ++GV RV + F Q +P+L +V P
Sbjct: 97 LHKNGSVGLVLRTLRMPDNSMSVIVQGVKRVVVEAFTQTEPYLAAKVTPKDEEELEGVEF 156
Query: 155 DTTSASPSDVSSKVL-----SVKEAVYSLNSLE 182
D + + ++SK++ S EA Y++ S+E
Sbjct: 157 DAYARTTKQLASKIIELSPNSPNEASYAIQSIE 189
>sp|A6LD45|LON_PARD8 Lon protease OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
20701 / NCTC 11152) GN=lon PE=3 SV=1
Length = 823
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 45 VPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASF 104
+P+LP N VL P + + + + + L++EA+ +K L + + E TE
Sbjct: 51 IPILPLR-NMVLFPGVALPVIIGRPKSMRLIKEAVHKKSL-----IGVVCQKEMGTEDPI 104
Query: 105 AARCGCLVLIENVERL----DIGALVSIRGVGRVKIVKFFQADPFLKGEVIPMQDT 156
+I ++ R+ D V ++G R ++ + + DP+L G++ ++DT
Sbjct: 105 LEDLYTTGVIADIVRVLEMPDGSTTVILQGKKRFELNELTETDPYLSGKITVLEDT 160
>sp|P0C6X0|R1AB_CVBQ Replicase polyprotein 1ab OS=Bovine coronavirus (strain Quebec)
GN=rep PE=3 SV=1
Length = 7059
Score = 31.2 bits (69), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 27/188 (14%)
Query: 101 EASFAARCGCLVLIENVERLDIGALVSI---------RGVGRVKIVKFFQADPFLKGEVI 151
E + C C + + R D+ L+ +GVG I F+ D G +
Sbjct: 1776 EIGYTVDCSCGKKLIHCVRFDVPFLICSNTPASVKLPKGVGSANI---FKGDKV--GHYV 1830
Query: 152 PMQDTTSASPSDVSSKVLSVKEAVYSL-NSLEIK-LKAPKEAVMQTYVLNSLQWAEKQPS 209
++ S D +S V V + +L + L +K LK ++V+ TY L+ ++ E +P
Sbjct: 1831 HVKCEQSYQLYD-ASNVKKVTDVTGNLSDCLYLKNLKQTFKSVLTTYYLDDVKKIEYKPD 1889
Query: 210 LD---CDEA-FIPSLAERVSFAAFQPVSG-STQSELVKLQQEKLKAMDLRDTKQRLNNSL 264
L CD + + F F+ V G T +L+ D+ + K ++S
Sbjct: 1890 LSQYYCDGGKYYTQRIIKAQFKTFEKVDGVYTNFKLIGHT-----VCDILNAKLGFDSSK 1944
Query: 265 EFVEGSIS 272
EFVE ++
Sbjct: 1945 EFVEYKVT 1952
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,174,794
Number of Sequences: 539616
Number of extensions: 3281319
Number of successful extensions: 9531
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 9526
Number of HSP's gapped (non-prelim): 20
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)