Query 023183
Match_columns 286
No_of_seqs 145 out of 1166
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:03:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023183.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023183hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10787 DNA-binding ATP-depen 100.0 4E-33 8.7E-38 282.4 25.9 210 39-282 5-215 (784)
2 TIGR00763 lon ATP-dependent pr 100.0 1.7E-30 3.6E-35 264.7 24.0 205 46-282 1-213 (775)
3 COG0466 Lon ATP-dependent Lon 100.0 4.9E-30 1.1E-34 249.3 22.8 206 44-282 9-216 (782)
4 PF02190 LON: ATP-dependent pr 100.0 1.3E-29 2.8E-34 218.1 21.5 194 44-269 1-205 (205)
5 COG2802 Uncharacterized protei 100.0 6E-28 1.3E-32 206.3 18.8 204 38-273 5-210 (221)
6 KOG4159 Predicted E3 ubiquitin 99.5 1.3E-14 2.9E-19 135.9 7.4 243 3-269 118-382 (398)
7 KOG2004 Mitochondrial ATP-depe 99.5 7.1E-13 1.5E-17 129.8 15.6 215 39-282 63-303 (906)
8 smart00464 LON Found in ATP-de 99.2 1.2E-10 2.5E-15 88.3 8.6 47 44-91 1-49 (92)
9 KOG1400 Predicted ATP-dependen 98.3 3.2E-07 6.8E-12 83.4 2.9 221 35-278 56-325 (371)
10 PRK10865 protein disaggregatio 32.8 61 0.0013 34.3 4.6 50 215-278 384-433 (857)
11 COG4014 Uncharacterized protei 30.1 71 0.0015 23.9 3.2 25 106-130 18-43 (97)
12 cd02066 GRX_family Glutaredoxi 23.3 30 0.00065 23.0 0.2 10 3-12 7-16 (72)
13 KOG4218 Nuclear hormone recept 21.4 33 0.00072 32.1 0.2 9 4-12 68-76 (475)
14 PF00462 Glutaredoxin: Glutare 21.0 21 0.00045 23.8 -1.0 51 3-55 6-59 (60)
15 PF04508 Pox_A_type_inc: Viral 20.3 47 0.001 18.4 0.5 13 273-285 3-15 (23)
No 1
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=100.00 E-value=4e-33 Score=282.40 Aligned_cols=210 Identities=18% Similarity=0.228 Sum_probs=179.3
Q ss_pred CCceeeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEEEEEEcCCCcccccccccccccceeEEEEEEee
Q 023183 39 NATSLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVE 118 (286)
Q Consensus 39 ~~~~~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~ 118 (286)
+....++|+||++ |+|+|||+.+||+||+++|+.|+++|+++++.||++++.+...++ +..+++|+|||+|+|+++.
T Consensus 5 ~~~~~~LPLfPLr-~~VLFPg~~lPL~Ife~R~i~~Ve~al~~~~~~gvv~~k~~~~~~--p~~~dLy~VGtla~I~~~~ 81 (784)
T PRK10787 5 RSERIEIPVLPLR-DVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDE--PGVNDLFTVGTVASILQML 81 (784)
T ss_pred cCCCceEEEEECC-CceeCCCceeeeecCCHHHHHHHHHHHhcCCEEEEEEecCCCCCC--CCcccccCccEEEEEEEee
Confidence 3445589999999 899999999999999999999999999999999999887644332 5567899999999999999
Q ss_pred EcCCCcE-EEEEEeeeEEEEEEeecCCeEEEEEEEecCCCCCCchhhhHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHH
Q 023183 119 RLDIGAL-VSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYV 197 (286)
Q Consensus 119 ~l~dG~~-V~v~G~~R~rI~~~~~~~p~~~a~v~~l~d~~~~~~~~~~a~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~ 197 (286)
+++||++ |+++|.+||+|.++.+.+||+.|+|++++++.. +..+.+++.+.+.+.+.++..+...++. ++
T Consensus 82 ~l~DG~~~Ilv~Gl~RfrI~~~~~~~py~~A~Ve~l~~~~~-~~~e~~al~~~ll~~~~~~~~l~~~~~~--------e~ 152 (784)
T PRK10787 82 KLPDGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTI-DEREQEVLVRTAISQFEGYIKLNKKIPP--------EV 152 (784)
T ss_pred ECCCCeEEEEEEEEEEEEEEEEEcCCCCEEEEEEEecCCCC-CchHHHHHHHHHHHHHHHHHHhcccCCH--------HH
Confidence 9999999 999999999999999999999999999988542 2335567778888888888877665543 22
Q ss_pred HHHhhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 023183 198 LNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAK 277 (286)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e~l~l~ 277 (286)
..... ..++|..++|.+|+.+|++ . ++||+|||+.|+.+|+++++.+|+++++.++++
T Consensus 153 ~~~~~--------------~~ddp~~Lad~iA~~Lpl~------~--~eKQ~LLE~~d~~eRLe~Ll~lL~~Eleil~l~ 210 (784)
T PRK10787 153 LTSLN--------------SIDDPARLADTIAAHMPLK------L--ADKQSVLEMSDVNERLEYLMAMMESEIDLLQVE 210 (784)
T ss_pred Hhhhh--------------ccccHHHHHHHHHHHCCCC------H--HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 1178899999999999999 8 999999999999999999999999999999999
Q ss_pred HHHhc
Q 023183 278 LAIQA 282 (286)
Q Consensus 278 ~~I~~ 282 (286)
++|++
T Consensus 211 ~~I~~ 215 (784)
T PRK10787 211 KRIRN 215 (784)
T ss_pred HHHHH
Confidence 99964
No 2
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.97 E-value=1.7e-30 Score=264.66 Aligned_cols=205 Identities=20% Similarity=0.270 Sum_probs=170.5
Q ss_pred eEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEE-EEEEcCCCcccccccccccccceeEEEEEEeeEcCC--
Q 023183 46 PLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFV-YFVLDPISISEYATEASFAARCGCLVLIENVERLDI-- 122 (286)
Q Consensus 46 Pl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~-v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~d-- 122 (286)
|+||++ ++|+|||+.+||+||+++|+.|+++|+.+++.|+ ++++.+...++ +..+++|+|||+|+|+++.+++|
T Consensus 1 Pl~PLr-~~VLfPg~~lpL~Ife~r~i~mV~~al~~~~~~~~vv~~k~~~~~~--p~~~~ly~VGt~a~I~~~~~~~d~~ 77 (775)
T TIGR00763 1 PLLPLR-RRPLFPGMIKPIDVGREKSIKLIKEALRLKQPYLGLFLQKDDDNEE--PEEDDIYSVGVVAQILEMLPLPSSG 77 (775)
T ss_pred CeEcCC-CCccCCCcceeEecCCHHHHHHHHHHHhcCCcEEEEEEecCcccCC--CCcccccCCceEEEEEEeccCCCCC
Confidence 899999 8999999999999999999999999999888777 65555433222 55678999999999999999555
Q ss_pred -CcE-EEEEEeeeEEEEEEeecCCeEEEEEEEecCCCC-CCchhhhHHHHHHHHHHHHHHhhhh--hcCCchhHHHHHHH
Q 023183 123 -GAL-VSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTS-ASPSDVSSKVLSVKEAVYSLNSLEI--KLKAPKEAVMQTYV 197 (286)
Q Consensus 123 -G~~-V~v~G~~R~rI~~~~~~~p~~~a~v~~l~d~~~-~~~~~~~a~~~~l~~~l~~~~~l~~--~~~~~~~~~~~~~~ 197 (286)
|++ |+++|.+||+|.++.+++||+.|+|+++++++. .+..+.+++...+.+.+.++..++. ..+. +.
T Consensus 78 dG~~~Ilv~G~~R~rI~~~~~~~p~~~A~V~~l~~~~~~~~~~e~~al~~~l~~~~~el~~l~~l~~~~~--------e~ 149 (775)
T TIGR00763 78 TATYKVVVEGLRRIRIKELSDKGGYLVVRVDNLKEEPFDKDDEEIKALTREIKETFRELISLSKLFREQP--------AL 149 (775)
T ss_pred CCeEEEEEEEEEEEEEEEEecCCCcEEEEEEEecCcCCCCCcHHHHHHHHHHHHHHHHHHHhCccccCCH--------HH
Confidence 999 999999999999999999999999999987532 2234577888899999999887766 3332 21
Q ss_pred HHHhhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 023183 198 LNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAK 277 (286)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e~l~l~ 277 (286)
...... .++|..++|++|+.++++. . ++||+|||+.|+.+|+++++.+|.++++.++++
T Consensus 150 ~~~~~~--------------~~dp~~Lad~ia~~L~l~~-----~--~eKQ~LLE~~d~~~RL~~l~~lL~~ele~l~l~ 208 (775)
T TIGR00763 150 LSALED--------------IDEPGRLADFVAASLQLKE-----K--DELQEVLETVNIEKRLKKALELLKKELELLKLQ 208 (775)
T ss_pred HHHHhc--------------cCCHHHHHHHHHHhcCCCc-----H--HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 1788999999999999841 4 999999999999999999999999999999999
Q ss_pred HHHhc
Q 023183 278 LAIQA 282 (286)
Q Consensus 278 ~~I~~ 282 (286)
++|++
T Consensus 209 ~~I~~ 213 (775)
T TIGR00763 209 NKITK 213 (775)
T ss_pred HHHHH
Confidence 99975
No 3
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.9e-30 Score=249.26 Aligned_cols=206 Identities=22% Similarity=0.297 Sum_probs=182.3
Q ss_pred eeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCC-CEEEEEEEcCCCcccccccccccccceeEEEEEEeeEcCC
Q 023183 44 VVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRK-KLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDI 122 (286)
Q Consensus 44 ~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~-~~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~d 122 (286)
.||++|+| +.|+|||+++||.+++++++.+++.+|.++ +.++++++.+...++ +..+++|.+||+|+|.++.++||
T Consensus 9 ~lpvlplr-~~vvfP~m~~pl~vgr~~si~ale~a~~~~~k~i~l~~qk~~~~d~--p~~~dly~vGt~a~I~q~~~lpd 85 (782)
T COG0466 9 ELPVLPLR-DVVVFPGMVIPLFVGREKSIKALEEAMKNDQKYILLVTQKDASTDE--PTEDDLYEVGTLAKILQILKLPD 85 (782)
T ss_pred cceeEEec-CceeCCCceeeEEcCChhHHHHHHHHHhCCCCEEEEEEecccccCC--CChhhhhhcchheeeeeeeeCCC
Confidence 89999999 899999999999999999999999999997 677777776544333 77789999999999999999999
Q ss_pred CcE-EEEEEeeeEEEEEEeecCCeEEEEEEEecCCCCCCchhhhHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHh
Q 023183 123 GAL-VSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSL 201 (286)
Q Consensus 123 G~~-V~v~G~~R~rI~~~~~~~p~~~a~v~~l~d~~~~~~~~~~a~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~ 201 (286)
|++ |+++|.+|++|.++...++|+.|+++.+++.+.....+.+++.+.+...+.+|++++++++. +..+.+
T Consensus 86 g~~kvlveg~~R~~I~~~~~~~~~~~a~~~~i~~~~~~~~~~~~al~~~i~~~~~~~~~l~~~~~~--------e~l~~~ 157 (782)
T COG0466 86 GTVKVLVEGLQRVRISKLSDEEEFFEAEIELLPDEPIDEEREIEALVRSILSEFEEYAKLNKKIPP--------EELQSL 157 (782)
T ss_pred CcEEEEEEeeeeEEEEeeccCCCceEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhccCCCH--------HHHHHH
Confidence 999 99999999999999999999999999999876432356789999999999999999887764 443332
Q ss_pred hhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023183 202 QWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAIQ 281 (286)
Q Consensus 202 ~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e~l~l~~~I~ 281 (286)
..+ ++|..++|.+|++++++ . ++||++||+.|+.+||+.++.+|.++++.++++++|+
T Consensus 158 ~~i--------------~~~~klad~iaa~l~~~------~--~~kQ~iLe~~~v~~Rlek~l~~l~~ei~~~~~ek~I~ 215 (782)
T COG0466 158 NSI--------------DDPGKLADTIAAHLPLK------L--EEKQEILETLDVKERLEKLLDLLEKEIDLLQLEKRIR 215 (782)
T ss_pred hcc--------------cchHHHHHHHHHhCCCC------H--HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 78889999999999999 8 9999999999999999999999999999999999997
Q ss_pred c
Q 023183 282 A 282 (286)
Q Consensus 282 ~ 282 (286)
+
T Consensus 216 ~ 216 (782)
T COG0466 216 K 216 (782)
T ss_pred H
Confidence 4
No 4
>PF02190 LON: ATP-dependent protease La (LON) domain; InterPro: IPR003111 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature defines the N-terminal domain of the archael, bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). In the eukaryotes the majority of the proteins are located in the mitochondrial matrix [, ]. In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response [].; GO: 0004176 ATP-dependent peptidase activity, 0006508 proteolysis; PDB: 3LJC_A 2ANE_G 1ZBO_A 3M65_A.
Probab=99.97 E-value=1.3e-29 Score=218.13 Aligned_cols=194 Identities=26% Similarity=0.371 Sum_probs=131.0
Q ss_pred eeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCE-EEEEEE-cCCCcccccccccccccceeEEEEEEeeEcC
Q 023183 44 VVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKL-FVYFVL-DPISISEYATEASFAARCGCLVLIENVERLD 121 (286)
Q Consensus 44 ~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~-~~v~~~-~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~ 121 (286)
+||+||++ +.|+|||+++||+|++++|+.|+++++.+++. ||+++. ......+. +...++|++||+|+|.++.+++
T Consensus 1 ~lPv~pl~-~~vlfPg~~~~i~i~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~G~~~~I~~~~~~~ 78 (205)
T PF02190_consen 1 ELPVFPLR-NQVLFPGQTLPIHIFEPRYIALLKRALDNNNPYFGIFLVKSNKDDSDE-PSIDDLYSVGTLARIIRVEELP 78 (205)
T ss_dssp EEEEEEES-SS---TTBEEEEEE-SHHHHHHHHHHHTTTSE-EEEEEE-EBSSTSSS-S-GGGB-SEEEEEEEEEEEEST
T ss_pred CEEEEEeC-CcccCCCeeEEEEECCHHHHHHHHHHHhcCCCceeEEeecccCCcccC-CcccccccceEEEEEEEEEecC
Confidence 58999999 89999999999999999999999999998875 999888 33222222 5568899999999999999999
Q ss_pred CCcE-EEEEEeeeEEEEEE---eecCCeEEEEEEEecCC-CCCCchh----hhHHHHHHHHHHHHHHhhhhhcCCchhHH
Q 023183 122 IGAL-VSIRGVGRVKIVKF---FQADPFLKGEVIPMQDT-TSASPSD----VSSKVLSVKEAVYSLNSLEIKLKAPKEAV 192 (286)
Q Consensus 122 dG~~-V~v~G~~R~rI~~~---~~~~p~~~a~v~~l~d~-~~~~~~~----~~a~~~~l~~~l~~~~~l~~~~~~~~~~~ 192 (286)
||++ |.++|.+||+|.++ .+++||++|++++++|. +. ..++ .+++...+.+.+.++......+.. .
T Consensus 79 dg~~~v~~~g~~R~ki~~~~~~~~~~~~~~a~v~~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--- 153 (205)
T PF02190_consen 79 DGTYKVLVQGLQRFKILKINNETQEDPYLVAEVEPLEDVEPP-ESDELDEEIKALLRELIKKIKEAYENLKELLP-W--- 153 (205)
T ss_dssp TS-EEEEEEEEEEEEEEEEEE--ECSSCEEEEEEEE-----G-CGHHHHHHHHHHHHHHHHHHH---HHHCCC-C-H---
T ss_pred CCCEEEEEEEEEEEEEEEEecccccCCceEEEEEEecccCcc-chhhhHHHHHHHHHHHHHHHHHHHHhhhcccc-h---
Confidence 9999 99999999999999 56999999999999873 22 1122 222222322222210011111110 0
Q ss_pred HHHHHHHHhhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHH
Q 023183 193 MQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEG 269 (286)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~ 269 (286)
...... ..+++|..++||+|+.+|++ . ++||+||++.|+.+|+++++++|++
T Consensus 154 ---~~~~~~--------------~~~~~~~~l~~~~~~~l~~~------~--~ek~~lL~~~~~~~Rl~~l~~~L~~ 205 (205)
T PF02190_consen 154 ---DLLLKI--------------NNPDNPPELADFVASLLPLS------P--EEKQELLETDDLKERLKLLIELLKK 205 (205)
T ss_dssp ---HHHHHT--------------TTHHHHHHHHHHHHHHS---------H--HHHHHHHC--SHHHHHHHHHHHHH-
T ss_pred ---hhhhhh--------------hccCCHHHHHHHHHHhCCCC------H--HHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 110000 11267778999999999999 8 9999999999999999999999975
No 5
>COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only]
Probab=99.96 E-value=6e-28 Score=206.32 Aligned_cols=204 Identities=18% Similarity=0.284 Sum_probs=152.5
Q ss_pred CCCceeeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEEEEEEcCCCcccccccccccccceeEEEEEEe
Q 023183 38 VNATSLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENV 117 (286)
Q Consensus 38 ~~~~~~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~ 117 (286)
+...+..||+|||+ +.|+|||..+||+||++||..|++.|+++++.||+++.+... +..++....+..|||+|+|+++
T Consensus 5 ~~~~p~~LplFPL~-~~vLlPg~~LpL~IFEpRY~~Mv~~~~~~~r~fGvv~i~~~~-~~~~~~~~~ls~VGcla~I~~~ 82 (221)
T COG2802 5 PDDLPLELPLFPLP-GAVLLPGGLLPLNIFEPRYLAMVRTCLAEGRRFGVVLIDRGR-EVGGGLPPELSDVGCLARITEF 82 (221)
T ss_pred cCCccceeeccccc-cccccCCCCCchhhccHHHHHHHHHHHhcCCceeEEEecccc-cccCCCcchhhccceeEEEeEe
Confidence 45667899999998 799999999999999999999999999999999999988743 1112445689999999999999
Q ss_pred eEcCCCcE-EEEEEeeeEEEEEEee-cCCeEEEEEEEecCCCCCCchhhhHHHHHHHHHHHHHHhhhhhcCCchhHHHHH
Q 023183 118 ERLDIGAL-VSIRGVGRVKIVKFFQ-ADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQT 195 (286)
Q Consensus 118 ~~l~dG~~-V~v~G~~R~rI~~~~~-~~p~~~a~v~~l~d~~~~~~~~~~a~~~~l~~~l~~~~~l~~~~~~~~~~~~~~ 195 (286)
..++||++ |.++|.+||||.++.. .+||.+|++++.+|.+..... ..+.-+.+.+.+....+.-....
T Consensus 83 ~~~~DGr~~I~~~G~~RFRv~~~~~~~~pyr~~~~~~~~D~~~~~~~-a~evdr~~~~~l~~~~r~~~~~~--------- 152 (221)
T COG2802 83 EELGDGRYLILVRGGQRFRVLEELADDDPYRRARVPFWPDLPSDPDG-AEEVDRRLDALLMRAARAYLQRL--------- 152 (221)
T ss_pred eEcCCCcEEEEEEeEEEEEEEEEecccCcceeeccccCCCCccCcch-HHHHHHHHHHHHHHHHHHHhhhc---------
Confidence 99999999 9999999999999985 999999999999887653221 11111111111111111000000
Q ss_pred HHHHHhhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHHH
Q 023183 196 YVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISM 273 (286)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e~ 273 (286)
++ ...|. ..-+.++..+++.++..+|++ . .+||++|+..|+..|++.++.+++.....
T Consensus 153 ~l--~~d~~----------~~~~~~~~~l~n~L~~llp~~------~--~~k~~ll~a~d~~~r~~~L~~~~e~l~a~ 210 (221)
T COG2802 153 EL--LADWE----------SYERASNADLANRLYMLLPFD------P--AEKQALLEAPDLPTRAERLIRLLEQLLAR 210 (221)
T ss_pred ch--hhhhc----------ccccccHHHHHHHHHHhCCCC------h--hHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 00 00111 011256678888899999999 8 99999999999999999999998876554
No 6
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.3e-14 Score=135.92 Aligned_cols=243 Identities=19% Similarity=0.200 Sum_probs=159.4
Q ss_pred CCCCCcccccccc------cCC----------cccCcccchhhhhhhhhhcCCCc-eeeeeEEeecCCeeEeCCCceEEE
Q 023183 3 SLSCVSCPFFVTH------HQP----------YPFAGQLSTTRARLRSALKVNAT-SLVVPLLPFNINEVLVPSESKILH 65 (286)
Q Consensus 3 ~~~~~~~~~~~~~------~~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~LPl~pl~~~~VlfPg~~~pL~ 65 (286)
+..||.|++.+.| +.. -++.++.+.++......+.+... .-..|+|++. +..||+...|++
T Consensus 118 ~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~~~~~s~~~~~~~~~e~~~~e~~~p~f~v~--~~~~p~v~cpl~ 195 (398)
T KOG4159|consen 118 ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEGSSSFSPKASEKSKEEESSRECESPLFPVC--TLAFPEVPCPLQ 195 (398)
T ss_pred CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhccccccccccCCccccc--ccccccccCcHH
Confidence 5689999998654 211 23334444444555444444433 3389999984 799999999999
Q ss_pred eechhHHHHHHHHHhCCC-EEEEEEEcCCCcccccccccccccceeEEEEEEeeEcCCCcE-EEEEEeeeEEEEEEeecC
Q 023183 66 LYEARYLALLEEALVRKK-LFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDIGAL-VSIRGVGRVKIVKFFQAD 143 (286)
Q Consensus 66 I~e~~~~~~v~~a~~~~~-~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~dG~~-V~v~G~~R~rI~~~~~~~ 143 (286)
+|+++|..|++++++.+. +||++..+.... .+..+.+|++.+|..+..+.||+. +...|..||++.....++
T Consensus 196 vfe~~y~lm~~r~~~~~~~rf~i~~sd~~~~------~~~~~e~g~i~ei~~v~~l~dgrsv~~~~gk~r~r~~~~~~~d 269 (398)
T KOG4159|consen 196 VFEPRYRLMIRRLLETGDKRFGICLSDSSKG------SGQAAEIGCILEIRKVESLGDGRSVVDSIGKSRFRVLLFSQTD 269 (398)
T ss_pred HccchHHHHHHHHHhhcceeeeeecccccCC------cchhhhccchhhhcccccccccchhhhhhcCcceeeeeecCCC
Confidence 999999999999999854 999988665332 125789999999999999999999 888999999999999999
Q ss_pred CeEEEEEEEecCCC-C--CCchhhhHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHHhhhhhhCCCCCCCcCCCCCc
Q 023183 144 PFLKGEVIPMQDTT-S--ASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSL 220 (286)
Q Consensus 144 p~~~a~v~~l~d~~-~--~~~~~~~a~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 220 (286)
+|..|+++++.|.+ . ....+.+.++................+..+ ....+.. -.|. .+..+.....+ .+
T Consensus 270 ~y~~~~ve~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~-~~~~--~p~le~~~~~~-~~ 341 (398)
T KOG4159|consen 270 GYPVADVEYLEDRPAVKVEGHDEPETLVELMKEVVKKECLWFESVADP----MKGRLLV-HFGC--MPFLEINFECL-ES 341 (398)
T ss_pred cceeeeeeeeeCcHHhhhccchhchhHHHHHHHHHHhhhhhhhccchh----hhhhhhh-cccc--cccchhchhhh-cc
Confidence 99999999998853 1 111112222222222122111111122210 0001100 0010 11111111111 34
Q ss_pred hhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHH
Q 023183 221 AERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEG 269 (286)
Q Consensus 221 p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~ 269 (286)
...+++|....++++ . ..+-.++...+..+|+.....++.-
T Consensus 342 ~~~~~~~~~~~~~~~------~--~~~~~~~~~~sl~~~l~~~~~~~t~ 382 (398)
T KOG4159|consen 342 GPAWCWWKTALLPSE------A--RLKSEFLAMRSLKNRLTAIDRELTL 382 (398)
T ss_pred chHHHHHHHhcCCcH------H--HHHHHHHhccchhhhhcccchhhhh
Confidence 557889999999988 7 8888999999999998877766653
No 7
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=7.1e-13 Score=129.85 Aligned_cols=215 Identities=14% Similarity=0.177 Sum_probs=154.9
Q ss_pred CCceeeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCC-EEEEEEEcCCCcccc-c------------ccc--
Q 023183 39 NATSLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKK-LFVYFVLDPISISEY-A------------TEA-- 102 (286)
Q Consensus 39 ~~~~~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~-~~~v~~~~~~~~~~~-~------------~~~-- 102 (286)
..-..+||++|++ .-+||||..+++.|..++.++++++-+.... .+|+++.++...+.+ . +..
T Consensus 63 ~~~~~~l~~Lpi~-~~pL~PGf~~~i~v~~~~~~~~i~~~l~~~qpyiG~fl~kdd~~~~~~~t~~~~vyi~~~~~~~~~ 141 (906)
T KOG2004|consen 63 PDVPPRLPALPIT-RGPLFPGFYKRIEVKSPKVLALIREKLRRQQPYIGAFLLKDDSSGDSVITSINEVYILEVFPGKDK 141 (906)
T ss_pred cccCcccceeecc-CCCcCCCceeEEEecCHHHHHHHHHHHHhcCcccceeeeccCCCCCcceeeccccceeeeecCCcc
Confidence 4445689999999 6999999999999999999999999998766 788887665432211 0 000
Q ss_pred ----cccccceeEEEEEEee---EcCCCcE-EEEEEeeeEEEEEEeecC--CeEEEEEEEecCCCCCCchhhhHHHHHHH
Q 023183 103 ----SFAARCGCLVLIENVE---RLDIGAL-VSIRGVGRVKIVKFFQAD--PFLKGEVIPMQDTTSASPSDVSSKVLSVK 172 (286)
Q Consensus 103 ----~~l~~iGtla~I~~~~---~l~dG~~-V~v~G~~R~rI~~~~~~~--p~~~a~v~~l~d~~~~~~~~~~a~~~~l~ 172 (286)
...++.+.+++..++. ....+.+ +.+-|..|+++.+...+. +.+..+++.+.+.+-...++.+|+..++.
T Consensus 142 ~~~~l~~hRr~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~i~e~~~e~~~~vl~v~v~~v~~e~~~~~~~~ka~~~ei~ 221 (906)
T KOG2004|consen 142 LRMVLYPHRRIRITELAPISEGKEDAEVEYSLLVTGLSRLNITEMKEEKEAEVLSVEVENVKDEPFKKDEEIKALTSEIL 221 (906)
T ss_pred hhhhhhhhhheeeeeeccccccccccccceeecccccccccchhhhccccCCceeeeeecccCCccCcchHHHHHHHHHH
Confidence 1123444444333332 2234556 888888999998887653 44666676666654323345888888888
Q ss_pred HHHHHHHhhhhhcCCchhHHHHHHHHHHhhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhcc
Q 023183 173 EAVYSLNSLEIKLKAPKEAVMQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMD 252 (286)
Q Consensus 173 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe 252 (286)
..+.++++.++.+. +..+..... ... .+|..|+|+.|+....+ . .+.|++|+
T Consensus 222 ~t~rdii~~n~l~r---------~~v~~~~~~--------~~~---~~~~~LaD~~aai~~~~------~--~elq~vL~ 273 (906)
T KOG2004|consen 222 KTLRDIIAVNSLFR---------EQVATLSQL--------IVE---DNPIKLADFGAAISGAE------F--HELQEVLE 273 (906)
T ss_pred HHHHHHHHhhHHHH---------HHHHHHHHH--------hcc---cChhHHHHHHHHHhccC------H--HHHHHHHH
Confidence 88888887664442 222211111 001 67889999999999888 8 99999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023183 253 LRDTKQRLNNSLEFVEGSISMLAAKLAIQA 282 (286)
Q Consensus 253 ~~d~~eRL~~~l~~L~~e~e~l~l~~~I~~ 282 (286)
..|+.+||++.+.+|+++++..+++.+|.+
T Consensus 274 ~~di~~Rl~~al~llkke~e~~klq~ki~k 303 (906)
T KOG2004|consen 274 ETDIEKRLEKALELLKKELELAKLQQKIGK 303 (906)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999854
No 8
>smart00464 LON Found in ATP-dependent protease La (LON). N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.
Probab=99.18 E-value=1.2e-10 Score=88.33 Aligned_cols=47 Identities=28% Similarity=0.498 Sum_probs=40.2
Q ss_pred eeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCC--EEEEEEEc
Q 023183 44 VVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKK--LFVYFVLD 91 (286)
Q Consensus 44 ~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~--~~~v~~~~ 91 (286)
.+|++|++ +.|+|||+..|+.++++++++++++++.+++ .++++...
T Consensus 1 ~lpviPl~-~~vlfP~~~~pl~v~~~~~i~~i~~~~~~~~~~~i~~~~~~ 49 (92)
T smart00464 1 TLPLLPIR-RRPLFPGFVLPIPVKRPKSVAAIKEALRRSQPYVIVFLLQD 49 (92)
T ss_pred CceEEEcC-CCccCCCceEEEEeCCHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 37999999 8999999999999999999999999998776 44444433
No 9
>KOG1400 consensus Predicted ATP-dependent protease PIL, contains LON domain [General function prediction only]
Probab=98.32 E-value=3.2e-07 Score=83.41 Aligned_cols=221 Identities=18% Similarity=0.126 Sum_probs=132.8
Q ss_pred hhcCCCceeeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhC--CCEEEEEEEcCCCcccccccccccccceeEE
Q 023183 35 ALKVNATSLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVR--KKLFVYFVLDPISISEYATEASFAARCGCLV 112 (286)
Q Consensus 35 ~~~~~~~~~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~--~~~~~v~~~~~~~~~~~~~~~~~l~~iGtla 112 (286)
.+...+.+..+|+++.- .+|+|||.++|+.+..|+-+.+++..... ++-|++.+..... .....-+|.+
T Consensus 56 ~~ldd~t~~~~p~~~~~-~~v~~PgqtLPl~~i~~~~~s~~r~lvs~ar~~~F~vl~r~~v~--------~re~~r~tt~ 126 (371)
T KOG1400|consen 56 ARLDDDTTNWIPICGQV-MAVLFPGQTLPLKFIDPQERSIVRRLVSSARDNGFVVLFRSDVP--------ERESLRYTTT 126 (371)
T ss_pred eeecCCceeeecccCce-eeEecCcccCcchhcCHHHHHHHHHHHHhhcCCceEEEecccch--------HHhhccccce
Confidence 34467788899999987 69999999999999999777777777665 6678776654422 2233456666
Q ss_pred EEEEeeEcCC--Cc-E--EEEEEeeeEEEEEEe-ecCCeEEEEEEEecCCCCCC--chhh--hHH---------------
Q 023183 113 LIENVERLDI--GA-L--VSIRGVGRVKIVKFF-QADPFLKGEVIPMQDTTSAS--PSDV--SSK--------------- 167 (286)
Q Consensus 113 ~I~~~~~l~d--G~-~--V~v~G~~R~rI~~~~-~~~p~~~a~v~~l~d~~~~~--~~~~--~a~--------------- 167 (286)
+|-....-.| |. + +...|..|+++.++. +..|.-.|+|+.+|+..... +.-. .|.
T Consensus 127 evd~~R~p~d~Fgn~l~~~~~~G~y~~~vl~lR~qs~g~~e~~~qL~P~~~i~~~~~Sf~~~~avq~~~~n~~~ia~~~n 206 (371)
T KOG1400|consen 127 EVDAYRVPQDNFGNALSMVKAMGRYRCKVLKLRTQSLGRGEAEVQLLPDVEIPCLLPSFIPKSAVQLPAHNKCSIATRIN 206 (371)
T ss_pred eccccccchhhhhhhhhhhhhhcccccceeeecccCCCcccceEEeccccccccccccccchhhheecccCcceeccCCC
Confidence 6553211122 43 3 677899999999986 56677788888887543210 0000 000
Q ss_pred ---------HHHHHHHHHHHHhhhhhc-----CCchhHHH--HH------HHHHHhhhhhhCCCCCCCcCCCCCchhHHH
Q 023183 168 ---------VLSVKEAVYSLNSLEIKL-----KAPKEAVM--QT------YVLNSLQWAEKQPSLDCDEAFIPSLAERVS 225 (286)
Q Consensus 168 ---------~~~l~~~l~~~~~l~~~~-----~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~p~~p~~ls 225 (286)
+..+. .+...-.++... ..|.-+.. +. -+.+...|.+. +..+..|+.|..||
T Consensus 207 ~~p~s~e~dm~sla-~f~~i~sls~~h~~~ll~~~~was~tyqSy~la~rivenarl~yE~-----lk~ds~~~kpivlS 280 (371)
T KOG1400|consen 207 GYPFSAERDMTSLA-VFRQIGSLSGFHGDDLLSWPKWASLTYQSYFLAKRIVENARLWYEL-----LKEDSAPGKPIVLS 280 (371)
T ss_pred CCccccccchhhhh-hheehhhhhhhcccccccccccchHHHHHHHHHHHHHHHHHHHHHh-----ccccccCCCceEee
Confidence 00000 000000111110 00000000 00 11112223221 11134568888999
Q ss_pred HHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 023183 226 FAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKL 278 (286)
Q Consensus 226 ~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e~l~l~~ 278 (286)
|++|..+++. . ..++.||.+.++..|+.+.+..++++.-.....+
T Consensus 281 f~~a~kihv~------e--~~~~hL~~~g~v~tRlq~e~~~~~k~ti~fCk~C 325 (371)
T KOG1400|consen 281 FKYAWKIHVC------E--RCREHLLWEGSVMTRLQREFFGIQKETITFCKEC 325 (371)
T ss_pred hhhhhhhhhh------H--HHHHHHHhhcccccchheeeecccchhhhhhHhh
Confidence 9999999999 7 8899999999999999999888887765544433
No 10
>PRK10865 protein disaggregation chaperone; Provisional
Probab=32.78 E-value=61 Score=34.31 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=39.7
Q ss_pred CCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 023183 215 AFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKL 278 (286)
Q Consensus 215 ~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e~l~l~~ 278 (286)
..+|+.+..+.|.+++.+.++ . ..|++.| +|++..+..|..+++.++.+.
T Consensus 384 ~~~pdkAi~LiD~aaa~~rl~------~--~~kp~~L------~rLer~l~~L~~E~e~l~~e~ 433 (857)
T PRK10865 384 RQLPDKAIDLIDEAASSIRMQ------I--DSKPEEL------DRLDRRIIQLKLEQQALMKES 433 (857)
T ss_pred CCCChHHHHHHHHHhcccccc------c--ccChHHH------HHHHHHHHHHHHHHHHHHhhh
Confidence 467899999999999999888 6 7777777 778888888877777665553
No 11
>COG4014 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.05 E-value=71 Score=23.87 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=20.8
Q ss_pred ccceeEEEEEEeeEcCCCcE-EEEEE
Q 023183 106 ARCGCLVLIENVERLDIGAL-VSIRG 130 (286)
Q Consensus 106 ~~iGtla~I~~~~~l~dG~~-V~v~G 130 (286)
-..||.++|..+.+..||.+ |.+.-
T Consensus 18 vnTgTvgrV~dIkkdEdG~~WV~Lds 43 (97)
T COG4014 18 VNTGTVGRVVDIKKDEDGDIWVVLDS 43 (97)
T ss_pred eecCceeeEEEEEeecCCceEEEEec
Confidence 36799999999999999998 77543
No 12
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=23.34 E-value=30 Score=22.98 Aligned_cols=10 Identities=20% Similarity=0.424 Sum_probs=8.2
Q ss_pred CCCCCccccc
Q 023183 3 SLSCVSCPFF 12 (286)
Q Consensus 3 ~~~~~~~~~~ 12 (286)
+..||.|+..
T Consensus 7 ~~~Cp~C~~~ 16 (72)
T cd02066 7 KSTCPYCKRA 16 (72)
T ss_pred CCCCHHHHHH
Confidence 5679999976
No 13
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=21.40 E-value=33 Score=32.10 Aligned_cols=9 Identities=44% Similarity=0.910 Sum_probs=7.9
Q ss_pred CCCCccccc
Q 023183 4 LSCVSCPFF 12 (286)
Q Consensus 4 ~~~~~~~~~ 12 (286)
-+||+|||-
T Consensus 68 KRCP~CRFQ 76 (475)
T KOG4218|consen 68 KRCPSCRFQ 76 (475)
T ss_pred ccCCchhHH
Confidence 489999997
No 14
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=20.99 E-value=21 Score=23.78 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=25.3
Q ss_pred CCCCCccccc---ccccCCcccCcccchhhhhhhhhhcCCCceeeeeEEeecCCee
Q 023183 3 SLSCVSCPFF---VTHHQPYPFAGQLSTTRARLRSALKVNATSLVVPLLPFNINEV 55 (286)
Q Consensus 3 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPl~pl~~~~V 55 (286)
+..||.|... |+... .||..-.-+.....++.+....-..++|.+.+. |.+
T Consensus 6 ~~~C~~C~~~~~~L~~~~-i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~-g~~ 59 (60)
T PF00462_consen 6 KPGCPYCKKAKEFLDEKG-IPYEEVDVDEDEEAREELKELSGVRTVPQVFID-GKF 59 (60)
T ss_dssp STTSHHHHHHHHHHHHTT-BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEET-TEE
T ss_pred cCCCcCHHHHHHHHHHcC-CeeeEcccccchhHHHHHHHHcCCCccCEEEEC-CEE
Confidence 5789999877 33322 344432222222222322222133478888776 444
No 15
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.28 E-value=47 Score=18.39 Aligned_cols=13 Identities=31% Similarity=0.217 Sum_probs=8.2
Q ss_pred HHHHHHHHhcccc
Q 023183 273 MLAAKLAIQALEM 285 (286)
Q Consensus 273 ~l~l~~~I~~~~~ 285 (286)
+-+++.+|.+||.
T Consensus 3 ~~rlr~rI~dLer 15 (23)
T PF04508_consen 3 MNRLRNRISDLER 15 (23)
T ss_pred HHHHHHHHHHHHH
Confidence 4456667777664
Done!