Query 023183
Match_columns 286
No_of_seqs 145 out of 1166
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 17:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m65_A ATP-dependent protease 100.0 2.1E-40 7E-45 287.2 23.8 202 42-277 6-208 (209)
2 3ljc_A ATP-dependent protease 100.0 2.8E-40 9.4E-45 294.3 20.6 207 42-282 15-222 (252)
3 1zbo_A Hypothetical protein BP 100.0 1.6E-36 5.6E-41 262.9 22.3 193 43-275 2-204 (210)
4 2ane_A ATP-dependent protease 99.9 8E-27 2.7E-31 186.1 16.2 110 42-154 15-125 (125)
5 1wv8_A TT1413, hypothetical pr 32.7 84 0.0029 21.6 4.9 49 133-182 3-52 (73)
6 4aqz_A PILQ, type IV pilus bio 29.6 1.9E+02 0.0066 22.2 7.4 87 55-154 51-137 (138)
7 2wul_A Glutaredoxin related pr 20.0 27 0.00093 26.3 0.5 48 4-51 33-83 (118)
8 2djb_A Polycomb group ring fin 19.3 57 0.002 21.4 2.0 19 3-21 50-68 (72)
9 3msz_A Glutaredoxin 1; alpha-b 14.9 59 0.002 21.6 1.3 10 3-12 11-20 (89)
10 3l9k_W Dynein intermediate cha 11.6 2.1E+02 0.0072 17.0 2.8 27 245-271 4-30 (38)
No 1
>3m65_A ATP-dependent protease LA 1; coiled-coil, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.1e-40 Score=287.25 Aligned_cols=202 Identities=17% Similarity=0.271 Sum_probs=176.3
Q ss_pred eeeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEEEEEEcCCCcccccccccccccceeEEEEEEeeEcC
Q 023183 42 SLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLD 121 (286)
Q Consensus 42 ~~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~ 121 (286)
..++|+||++ |+|+|||+.+||+||+++|++|+++|+++++.||++++.+...++ ++.+++|+|||+|+|.++.++|
T Consensus 6 ~~~lPl~PLr-~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~~~i~lv~q~~~~~~~--p~~~~l~~vGt~a~I~~~~~l~ 82 (209)
T 3m65_A 6 KRSIPLLPLR-GLLVYPTMVLHLDVGRDKSVQALEQAMMHDHMIFLATQQDISIDE--PGEDEIFTVGTYTKIKQMLKLP 82 (209)
T ss_dssp EEEEEEEEES-SCCCCTTCEEEEEECSHHHHHHHHHHTTTTSEEEEEEBSSTTCSS--CCGGGBCSEEEEEEEEEEEECT
T ss_pred CCceEEEEeC-CccccCCccEEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCcCC--CCcchhhheeEEEEEEEEEECC
Confidence 3589999999 899999999999999999999999999998899999877654332 6678999999999999999999
Q ss_pred CCcE-EEEEEeeeEEEEEEeecCCeEEEEEEEecCCCCCCchhhhHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHH
Q 023183 122 IGAL-VSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNS 200 (286)
Q Consensus 122 dG~~-V~v~G~~R~rI~~~~~~~p~~~a~v~~l~d~~~~~~~~~~a~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 200 (286)
||++ |+++|.+||+|.++.+.+||+.|+|++++|... .+.+.+++.+.+++.+.++..++..++. ++...
T Consensus 83 dG~~~v~v~G~~R~ri~~~~~~~~~~~a~v~~~~~~~~-~~~e~~al~~~l~~~~~~~~~~~~~~~~--------e~~~~ 153 (209)
T 3m65_A 83 NGTIRVLVEGLKRAHIVKYNEHEDYTSVDIQLIHEDDS-KDTEDEALMRTLLDHFDQYIKISKKISA--------ETYAA 153 (209)
T ss_dssp TSCEEEEEEEEEEEEEEEEEECSSSEEEEEEECCCC---CCSHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH
T ss_pred CCeEEEEEEEEEEEEEEEEEcCCCcEEEEEEEecCCCC-CCHHHHHHHHHHHHHHHHHHHhCCCCCH--------HHHHH
Confidence 9999 999999999999999999999999999988753 3346788999999999999887766643 33222
Q ss_pred hhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 023183 201 LQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAK 277 (286)
Q Consensus 201 ~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e~l~l~ 277 (286)
+.. .++|..++|++|++++++ . ++||+|||+.|+.+|+++++.+|+++++.++++
T Consensus 154 ~~~--------------~~dp~~lad~ia~~l~l~------~--~ekQ~lLe~~d~~~Rl~~l~~~L~~E~e~~~l~ 208 (209)
T 3m65_A 154 VTD--------------IEEPGRMADIVASHLPLK------L--KDKQDILETADVKDRLNKVIDFINNEKEVLEIE 208 (209)
T ss_dssp HHT--------------CCCHHHHHHHHHHHSCCC------H--HHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHc--------------cCCHHHHHHHHHHhCCCC------H--HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 221 189999999999999999 8 999999999999999999999999999999875
No 2
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=100.00 E-value=2.8e-40 Score=294.33 Aligned_cols=207 Identities=18% Similarity=0.226 Sum_probs=181.7
Q ss_pred eeeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEEEEEEcCCCcccccccccccccceeEEEEEEeeEcC
Q 023183 42 SLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLD 121 (286)
Q Consensus 42 ~~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~ 121 (286)
..+||+||++ |+|+|||+++||+||+++|+.|+++|+++++.||++++.+...++ |+.+++|+|||+|+|.++.++|
T Consensus 15 ~~~lPl~PLr-~~VlfPg~~~pL~I~~~r~~~~v~~a~~~~~~~~lv~q~~~~~~~--p~~~~l~~vGt~a~I~~~~~lp 91 (252)
T 3ljc_A 15 RIEIPVLPLR-DVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDE--PGVNDLFTVGTVASILQMLKLP 91 (252)
T ss_dssp CCCCEEEEES-SCCCCBTCEEEEEECCTTTHHHHHHHHTTTTEEEEEEBCSSCCSS--CCSSSBCSEEEEEEECCCBCCT
T ss_pred CCceeEEEeC-CccccCCcceEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCcCC--CCccchhheeEEEEEEEEEECC
Confidence 4479999999 899999999999999999999999999998889888876644332 6678999999999999999999
Q ss_pred CCcE-EEEEEeeeEEEEEEeecCCeEEEEEEEecCCCCCCchhhhHHHHHHHHHHHHHHhhhhhcCCchhHHHHHHHHHH
Q 023183 122 IGAL-VSIRGVGRVKIVKFFQADPFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLEIKLKAPKEAVMQTYVLNS 200 (286)
Q Consensus 122 dG~~-V~v~G~~R~rI~~~~~~~p~~~a~v~~l~d~~~~~~~~~~a~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 200 (286)
||++ |+++|.+||+|.++.+.+||+.|+|++++|... +..+.+++.+.+++.+.++..++..++. ++...
T Consensus 92 dG~~~v~v~G~~R~rI~~~~~~~~~~~a~ve~l~d~~~-~~~e~~al~~~l~~~~~~~~~l~~~~~~--------e~~~~ 162 (252)
T 3ljc_A 92 DGTVKVLVEGLQRARISALSDNGEHFSAKAEYLESPTI-DEREQEVLVRTAISQFEGYIKLNKKIPP--------EVLTS 162 (252)
T ss_dssp TSCEEEEEEEEEEEECSEEEEETTEEEEECCCCCCCCS-CHHHHHHHHHHHHHHHHHHHHHHCSSCH--------HHHHH
T ss_pred CCeEEEEEEEEEEEEEEEEEcCCCcEEEEEEeecCCCC-CChHHHHHHHHHHHHHHHHHHhcccCCH--------HHHHH
Confidence 9999 999999999999999999999999999988653 3346778899999999999888777754 33222
Q ss_pred hhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023183 201 LQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSISMLAAKLAI 280 (286)
Q Consensus 201 ~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e~l~l~~~I 280 (286)
+.. .++|..++|++|+.+|++ . ++||+||++.|+.+|+++++.+|.++++.++++++|
T Consensus 163 ~~~--------------~~dp~~Lad~ia~~l~l~------~--~eKQ~LLe~~d~~~Rl~~l~~lL~~e~e~~~l~~~I 220 (252)
T 3ljc_A 163 LNS--------------IDDPARLADTIAAHMPLK------L--ADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRI 220 (252)
T ss_dssp TTS--------------CCCHHHHHHHHHHTSCCC------H--HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHc--------------cCCHHHHHHHHHHhCCCC------H--HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 178999999999999999 8 999999999999999999999999999999999999
Q ss_pred hc
Q 023183 281 QA 282 (286)
Q Consensus 281 ~~ 282 (286)
++
T Consensus 221 ~~ 222 (252)
T 3ljc_A 221 RN 222 (252)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 3
>1zbo_A Hypothetical protein BPP1347; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.60A {Bordetella parapertussis} SCOP: b.122.1.10
Probab=100.00 E-value=1.6e-36 Score=262.88 Aligned_cols=193 Identities=19% Similarity=0.253 Sum_probs=159.5
Q ss_pred eeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEEEEEEcCCCc-ccccc-cccccccceeEEEEEEeeEc
Q 023183 43 LVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISI-SEYAT-EASFAARCGCLVLIENVERL 120 (286)
Q Consensus 43 ~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~v~~~~~~~~-~~~~~-~~~~l~~iGtla~I~~~~~l 120 (286)
.+||+||+ |+|+|||+.+||+||+++|++|+++|+++++.||++++.+... ++ + ..+++|+|||+|+|.++.++
T Consensus 2 ~~lPl~PL--~~vlfPg~~~pL~V~~~r~~~~v~~a~~~~~~~glv~~~~~~~~~~--~~~~~dl~~vGt~a~I~~~~~l 77 (210)
T 1zbo_A 2 AEIPLFPL--SNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRR--PDGREVLARAGTMARIDHWEAP 77 (210)
T ss_dssp CEEEEEEE--SSCCCTTBEEEEEECSTTTHHHHHHHHHTTCCEEEEEESSSCSSCC--SSCCCCEEEEEEEEEEEEEECS
T ss_pred cEeeEEec--CeeecCCCceeeEECCHHHHHHHHHHHhcCCcEEEEEeCCCcccCc--ccccCchhceEEEEEEEEEEeC
Confidence 47999999 4999999999999999999999999999888999999876442 22 3 25789999999999999999
Q ss_pred CCCcE-EEEEEeeeEEEEE-EeecCCeEEEEEEEecCCCC-CCchhhhHHHHHHHHHHHHHHhhh-----hhcCCchhHH
Q 023183 121 DIGAL-VSIRGVGRVKIVK-FFQADPFLKGEVIPMQDTTS-ASPSDVSSKVLSVKEAVYSLNSLE-----IKLKAPKEAV 192 (286)
Q Consensus 121 ~dG~~-V~v~G~~R~rI~~-~~~~~p~~~a~v~~l~d~~~-~~~~~~~a~~~~l~~~l~~~~~l~-----~~~~~~~~~~ 192 (286)
|||++ |+++|.+||+|.+ +.+.+||+.|+|++++|++. ....+.+++.+.+++.+.++.+++ ..++.
T Consensus 78 pdG~~~v~v~G~~R~rI~~~~~~~~~y~~a~ve~l~~~~~~~~~~e~~al~~~l~~~~~~~~~~~~~~~~~~l~~----- 152 (210)
T 1zbo_A 78 MPALLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAA----- 152 (210)
T ss_dssp STTCEEEEEEEEEEEEEEEEEECGGGCEEEEEEEECCCCCCCCCGGGHHHHHHHHHHHHHHHHTTCCTTTCSBCS-----
T ss_pred CCceEEEEEEEEEEEEEEEEeecCCCcEEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHHHHhccccccccCCC-----
Confidence 99999 9999999999965 66889999999999988642 133567889999999888887665 11110
Q ss_pred HHHHHHHHhhhhhhCCCCCCCcCCCCCchhHHHHHhcccCCCCchhhcccCHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Q 023183 193 MQTYVLNSLQWAEKQPSLDCDEAFIPSLAERVSFAAFQPVSGSTQSELVKLQQEKLKAMDLRDTKQRLNNSLEFVEGSIS 272 (286)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~ls~~va~~l~l~~~~~~~~~~~eKq~lLe~~d~~eRL~~~l~~L~~e~e 272 (286)
....++|..++|++|+++|++ . ++||+|||+ |+.+||++++.+|++++.
T Consensus 153 ----------------------~~~~~dp~~lad~ia~~l~l~------~--~ekQ~lLe~-d~~~Rl~~l~~~L~~e~~ 201 (210)
T 1zbo_A 153 ----------------------PFRLDDCGWVADRWAEMLSLP------P--ADKARLLLL-PPLDRLREIDAVLAADGH 201 (210)
T ss_dssp ----------------------CCCTTCHHHHHHHHHHHSCCC------H--HHHHHHHHS-CHHHHHHHHHHHHHC---
T ss_pred ----------------------cCCCCCHHHHHHHHHHhCCCC------H--HHHHHHHhC-CHHHHHHHHHHHHHHHhh
Confidence 011268999999999999999 8 999999999 999999999999999887
Q ss_pred HHH
Q 023183 273 MLA 275 (286)
Q Consensus 273 ~l~ 275 (286)
.++
T Consensus 202 ~~~ 204 (210)
T 1zbo_A 202 ALE 204 (210)
T ss_dssp ---
T ss_pred hhh
Confidence 664
No 4
>2ane_A ATP-dependent protease LA; LONN119, LON protease, hydrolase; 2.03A {Escherichia coli} SCOP: b.122.1.10
Probab=99.95 E-value=8e-27 Score=186.09 Aligned_cols=110 Identities=18% Similarity=0.266 Sum_probs=99.0
Q ss_pred eeeeeEEeecCCeeEeCCCceEEEeechhHHHHHHHHHhCCCEEEEEEEcCCCcccccccccccccceeEEEEEEeeEcC
Q 023183 42 SLVVPLLPFNINEVLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLD 121 (286)
Q Consensus 42 ~~~LPl~pl~~~~VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~ 121 (286)
+.+||+||++ |.|+|||+.+||+||+++|++|+++|+++++.|+++++.+...++ ++.+++|++||+|+|.++.+++
T Consensus 15 p~~lPl~PLr-~~vlfPg~~~pL~V~~~r~i~~v~~a~~~~~~i~lv~~k~~~~~~--p~~~dl~~vGt~a~I~~~~~lp 91 (125)
T 2ane_A 15 RIEIPVLPLR-DVVVYPHMVIPLFVGREKSIRCLEAAMDHDKKIMLVAQKEASTDE--PGVNDLFTVGTVASILQMLKLP 91 (125)
T ss_dssp CEEEEEEEES-SCCCCTTCEEEEEECCHHHHHHHHHHHTTTSEEEEEEBCTTCCSS--CCGGGBCSEEEEEEEEEEEECT
T ss_pred CCeEEEEEeC-CeeeCCCccEEEEECCHHHHHHHHHHHhcCCEEEEEEecCCCccC--CCccchhccEEEEEEEEEeeCC
Confidence 3479999999 899999999999999999999999999988888888776644332 5678899999999999999999
Q ss_pred CCcE-EEEEEeeeEEEEEEeecCCeEEEEEEEec
Q 023183 122 IGAL-VSIRGVGRVKIVKFFQADPFLKGEVIPMQ 154 (286)
Q Consensus 122 dG~~-V~v~G~~R~rI~~~~~~~p~~~a~v~~l~ 154 (286)
||++ |+++|.+||+|.++.+.+||+.|+|++++
T Consensus 92 dG~~~ilv~G~~R~rI~~~~~~~~~~~a~V~~l~ 125 (125)
T 2ane_A 92 DGTVKVLVEGLQRARISALSDNGEHFSAKAEYLE 125 (125)
T ss_dssp TSCEEEEEEEEEEEEEEEEEECSSSEEEEEEEC-
T ss_pred CCcEEEEEEEEEEEEEEEEEcCCCcEEEEEEECC
Confidence 9999 99999999999999899999999999863
No 5
>1wv8_A TT1413, hypothetical protein TTHA1013; structural genomics, unknown function, novel F riken structural genomics/proteomics initiative, RSGI; 2.20A {Thermus thermophilus} SCOP: d.304.1.1
Probab=32.67 E-value=84 Score=21.60 Aligned_cols=49 Identities=8% Similarity=0.096 Sum_probs=30.7
Q ss_pred eEEEEEEeecC-CeEEEEEEEecCCCCCCchhhhHHHHHHHHHHHHHHhhh
Q 023183 133 RVKIVKFFQAD-PFLKGEVIPMQDTTSASPSDVSSKVLSVKEAVYSLNSLE 182 (286)
Q Consensus 133 R~rI~~~~~~~-p~~~a~v~~l~d~~~~~~~~~~a~~~~l~~~l~~~~~l~ 182 (286)
.|.|.-.++.+ +||.|.+.-++--.. ..+.++++...+++.+.++...+
T Consensus 3 ~f~V~~~~Deeagv~vA~s~di~Glvt-ea~Tleel~~~i~~~i~~lLe~n 52 (73)
T 1wv8_A 3 TLKVQALWDGEAGVWVAESDDVPGLAT-EAATLEELLAKLAVMVPELLEEN 52 (73)
T ss_dssp EEEEEEEEETTTTEEEEECSSSTTCCC-EESSHHHHHHHHHHHHHHHHHHS
T ss_pred eEEEEEEEeCCCCEEEEECCCCCceee-ecCCHHHHHHHHHHHHHHHHHhc
Confidence 36666667655 999998766654322 12345667777777777766543
No 6
>4aqz_A PILQ, type IV pilus biogenesis and competence protein P; transport protein, secretin, type IV PILI, type II secretion; NMR {Neisseria meningitidis}
Probab=29.62 E-value=1.9e+02 Score=22.24 Aligned_cols=87 Identities=11% Similarity=0.072 Sum_probs=54.2
Q ss_pred eEeCCCceEEEeechhHHHHHHHHHhCCCEEEEEEEcCCCcccccccccccccceeEEEEEEeeEcCCCcEEEEEEeeeE
Q 023183 55 VLVPSESKILHLYEARYLALLEEALVRKKLFVYFVLDPISISEYATEASFAARCGCLVLIENVERLDIGALVSIRGVGRV 134 (286)
Q Consensus 55 VlfPg~~~pL~I~e~~~~~~v~~a~~~~~~~~v~~~~~~~~~~~~~~~~~l~~iGtla~I~~~~~l~dG~~V~v~G~~R~ 134 (286)
|-+++....++|.+ .++.+.+-+..-.- .+.-...-++.++||-+.-+...+..++.-++++-...+
T Consensus 51 v~L~~~~~~vdi~q------------~g~~ivv~~~~t~l-p~~L~rrlDV~DFaTPV~~I~~~~~g~~trl~I~~~G~~ 117 (138)
T 4aqz_A 51 LAALGFAGQPDISQ------------QHDHIIVTLKNHTL-PTTLQRSLDVADFKTPVQKVTLKRLNNDTQLIITTAGNW 117 (138)
T ss_dssp EECTTCCSCCEEEE------------CSSEEEEEETTCCC-CTTTCCEECCTTSSSSEEEEEEEECSSSEEEEEEECSSE
T ss_pred EEcCCCCCCcceEE------------ECCEEEEEEcCCCC-CHHHhhheeccccCCCceEEEEEEcCCCEEEEEEeCCce
Confidence 44666677777754 24444343322211 110012346778999988888877766654666666678
Q ss_pred EEEEEeecCCeEEEEEEEec
Q 023183 135 KIVKFFQADPFLKGEVIPMQ 154 (286)
Q Consensus 135 rI~~~~~~~p~~~a~v~~l~ 154 (286)
.-..+.+.+..+..+|.+..
T Consensus 118 ey~~~yQ~d~~~~veV~P~~ 137 (138)
T 4aqz_A 118 ELVNKSAAPGYFTFQVLPKK 137 (138)
T ss_dssp EEEEEEEETTEEEEEEEECC
T ss_pred eEEeeEeeCCEEEEEEEeCC
Confidence 87777788888888887753
No 7
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=19.95 E-value=27 Score=26.28 Aligned_cols=48 Identities=17% Similarity=0.160 Sum_probs=22.7
Q ss_pred CCCCccccc---ccccCCcccCcccchhhhhhhhhhcCCCceeeeeEEeec
Q 023183 4 LSCVSCPFF---VTHHQPYPFAGQLSTTRARLRSALKVNATSLVVPLLPFN 51 (286)
Q Consensus 4 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPl~pl~ 51 (286)
+.||.|.-. |..+.-.||..........+|..+....-..++|-+.+.
T Consensus 33 P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~ 83 (118)
T 2wul_A 33 PQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLN 83 (118)
T ss_dssp BSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEET
T ss_pred CCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCCeEeEC
Confidence 345555433 444433355554333333444444332223478888776
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=19.26 E-value=57 Score=21.41 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=13.8
Q ss_pred CCCCCcccccccccCCccc
Q 023183 3 SLSCVSCPFFVTHHQPYPF 21 (286)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (286)
+..||.||.-++...+.+.
T Consensus 50 ~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 50 SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CSSCTTTCCCCCSSCSCCC
T ss_pred CCcCCCcCcccCccccccc
Confidence 4679999988776665544
No 9
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=14.92 E-value=59 Score=21.63 Aligned_cols=10 Identities=20% Similarity=0.534 Sum_probs=8.2
Q ss_pred CCCCCccccc
Q 023183 3 SLSCVSCPFF 12 (286)
Q Consensus 3 ~~~~~~~~~~ 12 (286)
+..||.|+..
T Consensus 11 ~~~Cp~C~~~ 20 (89)
T 3msz_A 11 RNGCPYCVWA 20 (89)
T ss_dssp CTTCHHHHHH
T ss_pred cCCChhHHHH
Confidence 4689999877
No 10
>3l9k_W Dynein intermediate chain, cytosolic; LC7, light chain 7, KM23, RO hydrolase, alternative splicing, lysosome, membrane; 3.00A {Drosophila melanogaster}
Probab=11.62 E-value=2.1e+02 Score=16.97 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=21.7
Q ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHH
Q 023183 245 QEKLKAMDLRDTKQRLNNSLEFVEGSI 271 (286)
Q Consensus 245 ~eKq~lLe~~d~~eRL~~~l~~L~~e~ 271 (286)
++|++++...+-..=+++-.+++.+.+
T Consensus 4 EEk~~I~~S~~F~~F~~rsskviERAL 30 (38)
T 3l9k_W 4 EQKQMIILSENFQRFVVRAGRVIERAL 30 (38)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 899999999888877777777776655
Done!