BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023184
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 122/241 (50%), Gaps = 37/241 (15%)
Query: 52 QKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLP-----------------GISIVWGLV 94
++ AE++GT+ ++F G + V+ L P I + + L
Sbjct: 7 KRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMAFALA 66
Query: 95 VMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEK 154
+ ++YSLG ISGAH NP+VTIA + RFP ++V PYI+ Q +G+ L + LLF
Sbjct: 67 IAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGS----LLFLAC 122
Query: 155 QDQFAGTL---------PAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGS 205
A T+ P QA + E I TF LM VI GVA D RA AGL +G
Sbjct: 123 VGPAAATVGGLGATAPFPGIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGL 182
Query: 206 TVLLNVMFAGYMPITGASMNPARSLGPAIVSSQYK-GLW----IYIVAPPLGATAGAWVY 260
TV + G ITG+S+NPAR+ GP + S LW IY++ P +GA A AW+Y
Sbjct: 183 TVGGIITTIGN--ITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLY 240
Query: 261 N 261
N
Sbjct: 241 N 241
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 11/107 (10%)
Query: 52 QKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGIS-IVWGLVVMVLVYSLGHISGAHF 110
Q ++ E +GT+ ++ V +E+ + PG + +V GL V ++ ++G+I+G+
Sbjct: 146 QAILTEAIGTFLLMLVIMGVAV----DER--APPGFAGLVIGLTVGGIITTIGNITGSSL 199
Query: 111 NPSVTIAHATCKRFP----WKQVPPYILCQVLGSTLAAGTLRLLFQE 153
NP+ T W+ P Y++ ++G+ AA L +E
Sbjct: 200 NPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNYLAKE 246
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 114/210 (54%), Gaps = 18/210 (8%)
Query: 51 MQKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAH 109
+KL AE GT++++F GC S V+ ++ + G+++ WGL V+ + +++GHISG H
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISGGH 64
Query: 110 FNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT-- 161
FNP+VTI RFP K+V Y++ QV+G +AA L L+ F FA
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 162 ---LPAG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYM 217
P G S + A V+E +++ + VI G ATD A A +A+G + L + + +
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIGLIS--I 181
Query: 218 PITGASMNPARSLGPAIVSSQY--KGLWIY 245
P+T S+NPARS AI + + LW +
Sbjct: 182 PVTNFSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 113/210 (53%), Gaps = 18/210 (8%)
Query: 51 MQKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAH 109
+KL AE GT++++F GC S V+ + + G+++ WGL V+ + +++GHISG H
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISGGH 64
Query: 110 FNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT-- 161
FNP+VTI RFP K+V Y++ QV+G +AA L L+ F FA
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 162 ---LPAG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYM 217
P G S + A V+E +++ + VI G ATD A A +A+G + L + + +
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLIS--I 181
Query: 218 PITGASMNPARSLGPAIVSSQY--KGLWIY 245
P+T S+NPARS AI + + LW +
Sbjct: 182 PVTNTSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 114/210 (54%), Gaps = 18/210 (8%)
Query: 51 MQKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAH 109
+KL AE GT++++F GC S V+ ++ + G+++ +GL V+ + +++GHISG H
Sbjct: 2 FRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 61
Query: 110 FNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT-- 161
FNP+VTI RFP K+V Y++ QV+G +AA L L+ F FA
Sbjct: 62 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 121
Query: 162 ---LPAG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYM 217
P G S + A V+E +++ + VI G ATD A A +A+G + L + + +
Sbjct: 122 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLIS--I 178
Query: 218 PITGASMNPARSLGPAIVSSQY--KGLWIY 245
P+T S+NPARS AI + + LW +
Sbjct: 179 PVTNTSVNPARSTAVAIFQGGWALEQLWFF 208
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 118/244 (48%), Gaps = 11/244 (4%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVV--NLNNEKIVSLPGISIVWGLVVMVLVYSLGHISG 107
F + + AE L + S + N V + IS+ +GL + +V GHISG
Sbjct: 12 FWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISG 71
Query: 108 AHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSN 167
H NP+VT+A ++ + YI Q LG+ + AG L L+ G N
Sbjct: 72 GHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGN 131
Query: 168 IQA---FVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGYMPITGA 222
+ A ++E IITF L+F I D R G +A LA+G +V + +FA + TGA
Sbjct: 132 LTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFA--INYTGA 188
Query: 223 SMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKG 282
SMNPARS GPA++ ++ WIY V P +GA +Y V D L+ K A F K
Sbjct: 189 SMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEA-FSKA 247
Query: 283 AGRS 286
A ++
Sbjct: 248 AQQT 251
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 118/244 (48%), Gaps = 11/244 (4%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVV--NLNNEKIVSLPGISIVWGLVVMVLVYSLGHISG 107
F + + AE L + S + N V + IS+ +GL + +V GHISG
Sbjct: 51 FWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISG 110
Query: 108 AHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSN 167
H NP+VT+A ++ + YI Q LG+ + AG L L+ G N
Sbjct: 111 GHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGN 170
Query: 168 IQA---FVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGYMPITGA 222
+ A ++E IITF L+F I D R G +A LA+G +V + +FA + TGA
Sbjct: 171 LTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-LAIGFSVAIGHLFA--INYTGA 227
Query: 223 SMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKG 282
SMNPARS GPA++ ++ WIY V P +GA +Y V D L+ K A F K
Sbjct: 228 SMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEA-FSKA 286
Query: 283 AGRS 286
A ++
Sbjct: 287 AQQT 290
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 114/210 (54%), Gaps = 18/210 (8%)
Query: 51 MQKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAH 109
+KL AE GT++++F GC S V+ ++ + G+++ +GL V+ + +++GHISG H
Sbjct: 5 FRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 110 FNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT-- 161
FNP+VTI RFP K+V Y++ QV+G +AA L L+ F FA
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 162 ---LPAG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYM 217
P G S + A V+E +++ + VI G ATD A A +A+G + L + + +
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIGLIS--I 181
Query: 218 PITGASMNPARSLGPAIVSSQY--KGLWIY 245
P+T S+NPARS AI + + LW +
Sbjct: 182 PVTNFSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 119/246 (48%), Gaps = 38/246 (15%)
Query: 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLP-----------------GISIV 90
V ++ +AE +GT+ ++F G S V L + P I +
Sbjct: 2 VSLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLA 61
Query: 91 WGLVVMVLVYSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL 150
+G + +Y+LG+ISG H NP+VTI + K+FP ++V PYI+ Q+LG+ + +
Sbjct: 62 FGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGS----FI 117
Query: 151 FQEKQDQFAGTL---------PAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGL 201
F + A T+ P S QA + E + TF LM I G+A D RA AG+
Sbjct: 118 FLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGFAGI 177
Query: 202 AVGSTVLLNVMFAGYMPITGASMNPARSLGPAIVSSQYKG--LW----IYIVAPPLGATA 255
+G TV + G I+G+S+NPAR+ GP + + G LW IY++ P +GA
Sbjct: 178 IIGLTVAGIITTLG--NISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVL 235
Query: 256 GAWVYN 261
A Y
Sbjct: 236 AALTYQ 241
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 48 VPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISG 107
+ + Q ++AE++GT+ ++ + V+ K + I+ GL V ++ +LG+ISG
Sbjct: 141 ISYWQAMLAEVVGTFLLMIT-IMGIAVDERAPKGFA----GIIIGLTVAGIITTLGNISG 195
Query: 108 AHFNPSVTIA-HATCKRFP----WKQVPPYILCQVLGSTLAAGTLRLLFQE 153
+ NP+ T + F W Y++ ++G+ LAA T + L E
Sbjct: 196 SSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTSE 246
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 132/240 (55%), Gaps = 17/240 (7%)
Query: 42 DSVYFSVPFM-QKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLV 99
+++YF M +KL+AE GT++++F GC S V ++ + G+++ +GL V+ +
Sbjct: 20 ENLYFQSYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMA 79
Query: 100 YSLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEK----- 154
Y++G ISG HFNP+V++ RFP + PY++ QV G+ +AA L ++ K
Sbjct: 80 YAVGGISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDL 139
Query: 155 ----QDQFAGTLPAG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLL 209
+ + P G S + A ++E I+T + + VI G +T R A +A+G + L
Sbjct: 140 GGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILG-STHGRVPAGFAPIAIGLALTL 198
Query: 210 NVMFAGYMPITGASMNPARSLGPAIVSSQY--KGLWIYIVAPPLGATAGAWVYNMVRYTD 267
+ + +P+T S+NPARS G A+ + + LW++ +AP +G AGA ++ + D
Sbjct: 199 IHLIS--IPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFGEKD 256
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 117/244 (47%), Gaps = 11/244 (4%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVV--NLNNEKIVSLPGISIVWGLVVMVLVYSLGHISG 107
F + + AE L + S + N V + IS+ +GL + +V GHISG
Sbjct: 12 FWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISG 71
Query: 108 AHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSN 167
H NP+VT+A ++ + YI Q LG+ + AG L L+ G N
Sbjct: 72 GHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGN 131
Query: 168 IQA---FVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGYMPITGA 222
+ A ++E IITF L+F I R G +A LA+G +V + +FA + TGA
Sbjct: 132 LTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-LAIGFSVAIGHLFA--INYTGA 188
Query: 223 SMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFLKG 282
SMNPARS GPA++ ++ WIY V P +GA +Y V D L+ K A F K
Sbjct: 189 SMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRLKEA-FSKA 247
Query: 283 AGRS 286
A ++
Sbjct: 248 AQQT 251
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 18/210 (8%)
Query: 51 MQKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAH 109
+KL AE GT++++F G S V+ ++ + G+++ +GL V+ + +++GHISG H
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 110 FNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT-- 161
FNP+VTI RFP K+V Y++ QV+G +AA L L+ F FA
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 162 ---LPAG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYM 217
P G S + A V+E +++ + VI G ATD A A +A+G + L + + +
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLIS--I 181
Query: 218 PITGASMNPARSLGPAIVSSQY--KGLWIY 245
P+T S+NPARS AI + + LW +
Sbjct: 182 PVTNCSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 18/210 (8%)
Query: 51 MQKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAH 109
+KL AE GT++++F G S V+ ++ + G+++ +GL V+ + +++GHISG H
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 110 FNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT-- 161
FNP+VTI RFP K+V Y++ QV+G +AA L L+ F FA
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 162 ---LPAG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYM 217
P G S + A V+E +++ + VI G ATD A A +A+G + L + + +
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLIS--I 181
Query: 218 PITGASMNPARSLGPAIVSSQY--KGLWIY 245
P+T S+NPARS AI + + LW +
Sbjct: 182 PVTNCSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 112/210 (53%), Gaps = 18/210 (8%)
Query: 51 MQKLMAEILGTYFMIFAGCASVVVNLNNEKI-VSLPGISIVWGLVVMVLVYSLGHISGAH 109
+KL AE GT++++F G S V+ ++ + G+++ +GL V+ + +++GHISG H
Sbjct: 5 FRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGH 64
Query: 110 FNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLL------FQEKQDQFAGT-- 161
FNP+VTI RFP K+V Y++ QV+G +AA L L+ F FA
Sbjct: 65 FNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGY 124
Query: 162 ---LPAG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYM 217
P G S + A V+E +++ + VI G ATD A A +A+G L + + +
Sbjct: 125 GEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLACTLIHLIS--I 181
Query: 218 PITGASMNPARSLGPAIVSSQY--KGLWIY 245
P+T S+NPARS AI + + LW +
Sbjct: 182 PVTNTSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 108/221 (48%), Gaps = 10/221 (4%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKI--VSLPGISIVWGLVVMVLVYSLGHISG 107
F + + AE L + S + EK V + IS+ +GL + +V GHISG
Sbjct: 3 FWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISG 62
Query: 108 AHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGTLPAGSN 167
H NP+VT+A ++ + YI Q LG+ + AG L L+ G N
Sbjct: 63 GHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGN 122
Query: 168 IQA---FVMEFIITFYLMFVISGVATDNRA--IGELAGLAVGSTVLLNVMFAGYMPITGA 222
+ A ++E IITF L+F I R G +A LA+G +V + +FA + TGA
Sbjct: 123 LTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-LAIGFSVAIGHLFA--INYTGA 179
Query: 223 SMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 263
SMNPARS GPA++ ++ WIY V P +GA +Y V
Sbjct: 180 SMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYV 220
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 125/248 (50%), Gaps = 26/248 (10%)
Query: 47 SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPG------ISIVWGLVVMVLVY 100
S F + + AE T F +F G + + PG +++ +GL + LV
Sbjct: 2 SASFWRAIFAEFFATLFYVFFGLGA--------SLRWAPGPLHVLQVALAFGLALATLVQ 53
Query: 101 SLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQE--KQDQF 158
++GHISGAH NP+VT A + + Y++ Q+LG+ A L + + +
Sbjct: 54 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA 113
Query: 159 AGTLPAGSNI-QAFVMEFIITFYLMFVISGVAT-DNRAIGELA--GLAVGSTVLLNVMFA 214
TL G ++ QA ++E +T L FV+ AT D R G L LAVG ++ L +F
Sbjct: 114 LNTLHPGVSVGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFG 171
Query: 215 GYMPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREIT 274
Y TGA MNPARS PAI++ + W+Y V P +GA G+ +Y+ + + L+ ++
Sbjct: 172 MYY--TGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR--LKSVS 227
Query: 275 KSASFLKG 282
+ S LKG
Sbjct: 228 ERLSILKG 235
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 125/248 (50%), Gaps = 26/248 (10%)
Query: 47 SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPG------ISIVWGLVVMVLVY 100
S F + + AE T F +F G + + PG +++ +GL + LV
Sbjct: 6 SASFWRAIFAEFFATLFYVFFGLGA--------SLRWAPGPLHVLQVALAFGLALATLVQ 57
Query: 101 SLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQE--KQDQF 158
++GHISGAH NP+VT A + + Y++ Q+LG+ A L + + +
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA 117
Query: 159 AGTLPAGSNI-QAFVMEFIITFYLMFVISGVAT-DNRAIGELA--GLAVGSTVLLNVMFA 214
TL G ++ QA ++E +T L FV+ AT D R G L LAVG ++ L +F
Sbjct: 118 LNTLHPGVSVGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFG 175
Query: 215 GYMPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREIT 274
Y TGA MNPARS PAI++ + W+Y V P +GA G+ +Y+ + + L+ ++
Sbjct: 176 MYY--TGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR--LKSVS 231
Query: 275 KSASFLKG 282
+ S LKG
Sbjct: 232 ERLSILKG 239
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 126/249 (50%), Gaps = 26/249 (10%)
Query: 47 SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPG------ISIVWGLVVMVLVY 100
S F + + AE + F +F G + + PG +++ +GL + LV
Sbjct: 6 SASFWRAICAEFFASLFYVFFGLGA--------SLRWAPGPLHVLQVALAFGLALATLVQ 57
Query: 101 SLGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQE--KQDQF 158
++GHISGAH NP+VT A + + Y++ Q+LG+ A L + + +
Sbjct: 58 AVGHISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLA 117
Query: 159 AGTLPAGSNI-QAFVMEFIITFYLMFVISGVAT-DNRAIGELA--GLAVGSTVLLNVMFA 214
TL G ++ QA ++E +T L FV+ AT D R G L LAVG ++ L +F
Sbjct: 118 LNTLHPGVSVGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFG 175
Query: 215 GYMPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYTDKPLREIT 274
Y TGA MNPARS PAI++ + W+Y V P +GA G+ +Y+ + + L+ ++
Sbjct: 176 MYY--TGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR--LKSVS 231
Query: 275 KSASFLKGA 283
+ S LKG+
Sbjct: 232 ERLSILKGS 240
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 115/228 (50%), Gaps = 24/228 (10%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPG------ISIVWGLVVMVLVYSLG 103
F + + AE T F +F G + + PG +++ +GL + LV ++G
Sbjct: 3 FWRAIFAEFFATLFYVFFGLGA--------SLRWAPGPLHVLQVALAFGLALATLVQAVG 54
Query: 104 HISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQE--KQDQFAGT 161
HISGAH NP+VT A + + Y++ Q+LG+ A L + + + T
Sbjct: 55 HISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNT 114
Query: 162 LPAGSNI-QAFVMEFIITFYLMFVISGVAT-DNRAIGELA--GLAVGSTVLLNVMFAGYM 217
L G ++ QA ++E +T L FV+ AT D R G L LAVG ++ L +F Y
Sbjct: 115 LHPGVSVGQATIVEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYY 172
Query: 218 PITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRY 265
TGA MNPARS PAI++ + W+Y V P +GA G+ +Y+ + +
Sbjct: 173 --TGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLF 218
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 53 KLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNP 112
+ +AE LGT +IF G V IS++WGL V + +Y +SGAH NP
Sbjct: 10 QCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNP 69
Query: 113 SVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTL-----RLLFQEKQDQ---------- 157
+VTIA F ++V P+I+ QV G+ AA + L F +Q
Sbjct: 70 AVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESV 129
Query: 158 -FAGTLPAGSN-----IQAFVMEFIITFYLMFVISGVATDNRAI--GELAGLAVGSTVLL 209
AGT N +QAF +E +IT LM +I + D + G LA L +G +L+
Sbjct: 130 DLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIG--LLI 187
Query: 210 NVMFAGYMPITGASMNPARSLGPAIVS 236
V+ A P+TG +MNPAR GP + +
Sbjct: 188 AVIGASMGPLTGFAMNPARDFGPKVFA 214
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 15/225 (6%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVV-----VNLNNEKIVSLPGISIVWGLVVMVLVYSLGH 104
F + ++AE L T +F S + V N + +S+ +GL + L S+GH
Sbjct: 10 FWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGH 69
Query: 105 ISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG--TL 162
ISGAH NP+VT+ + + YI+ Q +G+ +A L + G L
Sbjct: 70 ISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDL 129
Query: 163 PAGSNI-QAFVMEFIITFYLMFVISGVATDNRAIGELAG---LAVGSTVLLNVMFAGYMP 218
G N Q +E I T L+ + +AT +R +L G LA+G +V L + A +
Sbjct: 130 ADGVNSGQGLGIEIIGTLQLVLCV--LATTDRRRRDLGGSAPLAIGLSVALGHLLA--ID 185
Query: 219 ITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 263
TG +NPARS G A+++ + WI+ V P +G +Y+ +
Sbjct: 186 YTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFI 230
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 17/227 (7%)
Query: 50 FMQKLMAEILGTYFMIFAGCAS-------VVVNLNNEKIVSLPGISIVWGLVVMVLVYSL 102
F + ++AE L IF S + N + +S+ +GL + L S+
Sbjct: 10 FWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSV 69
Query: 103 GHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAGT- 161
GHISGAH NP+VT+ + + YI+ Q +G+ +A L + D G
Sbjct: 70 GHISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLN 129
Query: 162 --LPAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAG---LAVGSTVLLNVMFAGY 216
P ++ Q +E I T L+ + +AT +R +L G LA+G +V L + A
Sbjct: 130 ALAPGVNSGQGLGIEIIGTLQLVLCV--LATTDRRRRDLGGSGPLAIGFSVALGHLLA-- 185
Query: 217 MPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 263
+ TG +NPARS G ++++ ++ WI+ V P +GA +Y+ +
Sbjct: 186 IDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFI 232
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 53 KLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHISGAHFNP 112
+ +AE LGT +IF G V IS+++GL V + +Y +SGAH NP
Sbjct: 10 QCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNP 69
Query: 113 SVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTL-----RLLFQEKQDQ---------- 157
+VTIA F ++V P+I+ QV G+ AA + L F +Q
Sbjct: 70 AVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESV 129
Query: 158 -FAGTLPAGSN-----IQAFVMEFIITFYLMFVISGVATDNRAI--GELAGLAVGSTVLL 209
AGT N +QAF +E +IT LM +I + D + G LA L +G +L+
Sbjct: 130 DLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIG--LLI 187
Query: 210 NVMFAGYMPITGASMNPARSLGPAIVS 236
V+ A P+TG +MNPAR GP + +
Sbjct: 188 AVIGASMGPLTGTAMNPARDFGPKVFA 214
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 118/242 (48%), Gaps = 13/242 (5%)
Query: 47 SVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPGISIVWGLVVMVLVYSLGHIS 106
SV F++ + AE L T +F G S + + ++ I++ +GL + L +LG +S
Sbjct: 8 SVAFLKAVFAEFLATLIFVFFGLGSALKW--PSALPTILQIALAFGLAIGTLAQALGPVS 65
Query: 107 GAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTL---RLLFQEKQDQFAGTLP 163
G H NP++T+A + + Y+ Q++G+ AG L L
Sbjct: 66 GGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNN 125
Query: 164 AGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELA--GLAVGSTVLLNVMFAGYMPITG 221
+ QA V+E I+TF L I +TD+R + L++G +V L + Y TG
Sbjct: 126 NTTQGQAMVVELILTFQLALCIFA-STDSRRTSPVGSPALSIGLSVTLGHLVGIYF--TG 182
Query: 222 ASMNPARSLGPAIVSSQYK-GLWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSASFL 280
SMNPARS GPA+V +++ W++ V P +GA A +Y + + + +++ + +
Sbjct: 183 CSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNS--LSLSERVAII 240
Query: 281 KG 282
KG
Sbjct: 241 KG 242
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 17/229 (7%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHIS 106
F + +AE + T ++ A+V+ + + V L GI+ +G ++ VLVY IS
Sbjct: 37 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 107 GAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLP 163
G H NP+VT ++ + Y++ Q LG+ G ++ + +QF G ++
Sbjct: 97 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 156
Query: 164 AGSNI-QAFVMEFIITFYLMFVISGVATDNRAIGE-----LAGLAVGSTVLLNVMFAGYM 217
G N A E I TF L++ + R+ + LA L +G V + + +
Sbjct: 157 LGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFM--VHLATI 214
Query: 218 PITGASMNPARSLGPAIVSSQYK---GLWIYIVAPPLGATAGAWVYNMV 263
PITG +NPARS G A++ + K WI+ V P +GA A + V
Sbjct: 215 PITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 263
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 17/229 (7%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHIS 106
F + +AE + T ++ A+V+ + + V L GI+ +G ++ VLVY IS
Sbjct: 37 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 96
Query: 107 GAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLP 163
G H NP+VT ++ + Y++ Q LG+ G ++ + +QF G ++
Sbjct: 97 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 156
Query: 164 AGSNI-QAFVMEFIITFYLMFVISGVATDNRAIGE-----LAGLAVGSTVLLNVMFAGYM 217
G N A E I TF L++ + R+ + LA L +G V + + +
Sbjct: 157 LGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFM--VHLATI 214
Query: 218 PITGASMNPARSLGPAIVSSQYK---GLWIYIVAPPLGATAGAWVYNMV 263
PITG +NPARS G A++ + K WI+ V P +GA A + V
Sbjct: 215 PITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 263
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 17/229 (7%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHIS 106
F + +AE + T ++ A+V+ + + V L GI+ +G ++ VLVY IS
Sbjct: 60 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 107 GAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLP 163
G H NP+VT ++ + Y++ Q LG+ G ++ + +QF G ++
Sbjct: 120 GGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 179
Query: 164 AGSNI-QAFVMEFIITFYLMFVISGVATDNRAIGE-----LAGLAVGSTVLLNVMFAGYM 217
G N A E I TF L++ + R+ + LA L +G V + + +
Sbjct: 180 LGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFM--VHLATI 237
Query: 218 PITGASMNPARSLGPAIVSSQYK---GLWIYIVAPPLGATAGAWVYNMV 263
PITG +NPARS G A++ + K WI+ V P +GA A + V
Sbjct: 238 PITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 286
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 17/229 (7%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHIS 106
F + +AE + T ++ A+V+ + + V L GI+ +G ++ VLVY IS
Sbjct: 60 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 119
Query: 107 GAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLP 163
G H NP+VT ++ + Y++ Q LG+ G ++ + +QF G ++
Sbjct: 120 GGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 179
Query: 164 AGSNI-QAFVMEFIITFYLMFVISGVATDNRAIGE-----LAGLAVGSTVLLNVMFAGYM 217
G N A E I TF L++ + R+ + LA L +G V + + +
Sbjct: 180 LGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFM--VHLATI 237
Query: 218 PITGASMNPARSLGPAIVSSQYK---GLWIYIVAPPLGATAGAWVYNMV 263
PITG +NPARS G A++ + K WI+ V P +GA A + V
Sbjct: 238 PITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 286
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 17/229 (7%)
Query: 50 FMQKLMAEILGTYFMIFAGCASVVVNLNNEKI---VSLPGISIVWGLVVMVLVYSLGHIS 106
F + +AE + T ++ A+V+ + + V L GI+ +G ++ VLVY IS
Sbjct: 56 FWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGIS 115
Query: 107 GAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQEKQDQFAG---TLP 163
G H NP+VT ++ + Y++ Q LG+ G ++ + +QF G ++
Sbjct: 116 GGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVA 175
Query: 164 AGSNI-QAFVMEFIITFYLMFVISGVATDNRAIGE-----LAGLAVGSTVLLNVMFAGYM 217
G N A E I TF L++ + R+ + LA L +G V + + +
Sbjct: 176 LGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFM--VHLATI 233
Query: 218 PITGASMNPARSLGPAIVSSQYK---GLWIYIVAPPLGATAGAWVYNMV 263
PITG +NPARS G A++ + K WI+ V P +GA A + V
Sbjct: 234 PITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYV 282
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 110/242 (45%), Gaps = 29/242 (11%)
Query: 46 FSVPFMQKLMAEILGTYFMIFAGCASVVVNLNNEKIVSLPG----ISIVWGLVVMVLVYS 101
F ++++ + E LGT+ ++F G + N L G + + WGL V +
Sbjct: 5 FYKSYVREFIGEFLGTFVLMFLGEGATA----NFHTTGLSGDWYKLCLGWGLAVFFGILV 60
Query: 102 LGHISGAHFNPSVTIAHATCKRFPWKQVPPYILCQVLGSTLAAGTLRLLFQ-----EKQD 156
+SGAH N +V+I ++ +F K++P Y Q+LG+ + T+ L+ K
Sbjct: 61 SAKLSGAHLNLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIP 120
Query: 157 QFAGTL---PAGSNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMF 213
QFA P+ S AF E I+T ++ ++ V D G+ L + S V L ++
Sbjct: 121 QFAWETSRNPSISLTGAFFNELILT-GILLLVILVVVDENICGKFHILKLSSVVGLIILC 179
Query: 214 AG--YMPITGASMNPARSLGPAIVSSQYKG----------LWIYIVAPPLGATAGAWVYN 261
G + TG ++NP+R LG +S G W+ +VAP +G+ Y+
Sbjct: 180 IGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYD 239
Query: 262 MV 263
V
Sbjct: 240 KV 241
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 99/227 (43%), Gaps = 26/227 (11%)
Query: 57 EILGTYFMIFAGCASVVVNLNNEKIVSLPG---------ISIVWGLVVMVLVYSLGHISG 107
E +GT+ +F A V+ + N+ + G IS +G VMV V+ +SG
Sbjct: 51 EFVGTF--LFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSG 108
Query: 108 AHFNPSVTIAHATCKRFPWKQVPPY-----ILCQVLGSTLAAGTLRLLFQEKQDQFAGTL 162
+ NP+VT+A + +PP+ Q++ AAG + + FA L
Sbjct: 109 GNLNPAVTLALVLA-----RAIPPFRGILMAFTQIVAGMAAAGAASAM-TPGEIAFANAL 162
Query: 163 PAG-SNIQAFVMEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVMFAGYMPITG 221
G S + +E T L + +A + A +G +L+ + Y TG
Sbjct: 163 GGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRATWFAPFVIGIALLIAHLICIYY--TG 220
Query: 222 ASMNPARSLGPAIVSSQYKGL-WIYIVAPPLGATAGAWVYNMVRYTD 267
A +NPARS GPA+ + + WIY + P LGA ++ M ++ +
Sbjct: 221 AGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLN 267
>pdb|3GF3|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaconyl-Coa
pdb|3GF7|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Apoprotein
pdb|3GLM|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|C Chain C, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GLM|D Chain D, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Crotonyl-Coa
pdb|3GMA|A Chain A, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
pdb|3GMA|B Chain B, Glutaconyl-Coa Decarboxylase A Subunit From Clostridium
Symbiosum Co-Crystallized With Glutaryl-Coa
Length = 588
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 241 GLWIYIVAPPLGATAGAWV----YNMVRYTD 267
G W+YIVA AGAWV N++R +D
Sbjct: 105 GKWVYIVASDNKKMAGAWVPGQAENLIRCSD 135
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 242 LWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSAS 278
L I ++P LG +AG W + +TDK L K+ +
Sbjct: 212 LVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGA 248
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 242 LWIYIVAPPLGATAGAWVYNMVRYTDKPLREITKSAS 278
L I ++P LG +AG W + +TDK L K+ +
Sbjct: 212 LVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGA 248
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,833,770
Number of Sequences: 62578
Number of extensions: 296437
Number of successful extensions: 1017
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 69
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)