Query 023185
Match_columns 286
No_of_seqs 123 out of 129
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 09:04:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11637 AmiB activator; Provi 99.3 4.4E-09 9.6E-14 103.2 26.6 145 41-187 50-234 (428)
2 COG3883 Uncharacterized protei 99.1 1.9E-07 4.1E-12 86.3 25.2 143 46-192 39-217 (265)
3 COG4942 Membrane-bound metallo 98.6 5.2E-05 1.1E-09 74.3 25.6 160 45-204 38-242 (420)
4 PRK11637 AmiB activator; Provi 98.4 0.00013 2.8E-09 71.8 24.8 152 43-194 66-255 (428)
5 COG3883 Uncharacterized protei 98.2 0.0013 2.7E-08 61.2 24.7 181 47-265 33-240 (265)
6 PRK09039 hypothetical protein; 98.1 0.0016 3.5E-08 62.7 24.5 162 3-184 23-184 (343)
7 PF12718 Tropomyosin_1: Tropom 98.1 0.0018 4E-08 55.0 20.6 60 43-102 5-64 (143)
8 PF12718 Tropomyosin_1: Tropom 98.0 0.0045 9.8E-08 52.6 21.0 133 47-191 2-134 (143)
9 KOG0250 DNA repair protein RAD 97.9 0.0074 1.6E-07 65.0 26.7 34 216-250 457-490 (1074)
10 PF00261 Tropomyosin: Tropomyo 97.9 0.0028 6.1E-08 57.8 20.3 148 47-195 3-150 (237)
11 TIGR02169 SMC_prok_A chromosom 97.9 0.0057 1.2E-07 66.2 25.6 44 44-87 293-336 (1164)
12 COG1579 Zn-ribbon protein, pos 97.9 0.014 3E-07 53.7 24.0 18 207-224 169-186 (239)
13 TIGR02168 SMC_prok_B chromosom 97.8 0.011 2.3E-07 63.7 25.6 41 44-84 676-716 (1179)
14 PF00261 Tropomyosin: Tropomyo 97.7 0.026 5.7E-07 51.5 23.4 41 45-85 36-76 (237)
15 KOG0250 DNA repair protein RAD 97.7 0.016 3.4E-07 62.6 24.6 145 44-188 280-438 (1074)
16 PRK02224 chromosome segregatio 97.3 0.083 1.8E-06 56.3 24.1 26 44-69 474-499 (880)
17 PHA02562 46 endonuclease subun 97.3 0.12 2.7E-06 51.9 24.2 31 161-191 340-370 (562)
18 KOG0994 Extracellular matrix g 97.3 0.24 5.3E-06 54.1 26.8 158 39-197 1543-1700(1758)
19 COG4942 Membrane-bound metallo 97.3 0.13 2.9E-06 50.8 23.2 154 39-192 46-244 (420)
20 PHA02562 46 endonuclease subun 97.3 0.07 1.5E-06 53.7 21.9 56 44-99 219-274 (562)
21 COG1196 Smc Chromosome segrega 97.3 0.12 2.6E-06 57.2 25.2 35 156-190 875-909 (1163)
22 PRK04778 septation ring format 97.2 0.31 6.8E-06 49.9 28.3 113 118-230 350-462 (569)
23 PRK03918 chromosome segregatio 97.2 0.16 3.6E-06 53.9 24.9 25 75-99 202-226 (880)
24 PRK03918 chromosome segregatio 97.2 0.12 2.7E-06 54.9 23.7 34 151-184 666-699 (880)
25 PF07888 CALCOCO1: Calcium bin 97.1 0.35 7.5E-06 49.4 25.1 93 41-133 139-237 (546)
26 COG1579 Zn-ribbon protein, pos 97.1 0.19 4.2E-06 46.2 21.3 52 45-96 31-82 (239)
27 PF05667 DUF812: Protein of un 97.1 0.15 3.2E-06 52.8 22.3 58 42-99 325-382 (594)
28 KOG0996 Structural maintenance 97.1 0.29 6.3E-06 53.6 24.8 73 124-196 494-566 (1293)
29 KOG0161 Myosin class II heavy 97.0 0.21 4.7E-06 57.5 24.5 49 128-176 1060-1108(1930)
30 PRK01156 chromosome segregatio 97.0 0.39 8.4E-06 51.5 25.0 31 152-182 689-719 (895)
31 TIGR00606 rad50 rad50. This fa 96.9 0.77 1.7E-05 51.6 27.0 21 263-283 1129-1149(1311)
32 TIGR00606 rad50 rad50. This fa 96.8 1.2 2.6E-05 50.0 29.9 17 256-272 997-1013(1311)
33 PF07888 CALCOCO1: Calcium bin 96.8 0.71 1.5E-05 47.2 24.1 50 50-99 141-190 (546)
34 PF08317 Spc7: Spc7 kinetochor 96.8 0.39 8.4E-06 45.9 21.2 45 56-100 153-197 (325)
35 PRK09039 hypothetical protein; 96.7 0.31 6.8E-06 47.0 20.0 50 45-94 53-102 (343)
36 PRK04863 mukB cell division pr 96.6 1.6 3.5E-05 49.8 26.9 43 59-101 293-335 (1486)
37 PF09726 Macoilin: Transmembra 96.5 0.53 1.2E-05 49.6 21.3 96 42-138 422-517 (697)
38 PF09726 Macoilin: Transmembra 96.5 1.1 2.4E-05 47.3 23.5 106 42-148 457-577 (697)
39 KOG1029 Endocytic adaptor prot 96.5 0.88 1.9E-05 48.2 22.2 62 42-103 441-502 (1118)
40 PRK04863 mukB cell division pr 96.4 2.6 5.7E-05 48.1 29.2 43 42-84 290-332 (1486)
41 PF08614 ATG16: Autophagy prot 96.3 0.11 2.4E-06 46.0 13.3 100 42-149 71-170 (194)
42 KOG0996 Structural maintenance 96.3 1 2.2E-05 49.6 22.4 25 178-202 541-565 (1293)
43 KOG0933 Structural maintenance 96.3 2.1 4.6E-05 46.6 25.9 60 44-103 740-803 (1174)
44 PF00038 Filament: Intermediat 96.3 0.56 1.2E-05 43.9 18.6 34 156-189 267-300 (312)
45 COG1340 Uncharacterized archae 96.3 1 2.2E-05 42.7 22.6 57 41-97 44-100 (294)
46 TIGR01843 type_I_hlyD type I s 96.3 0.98 2.1E-05 43.4 20.6 18 174-191 248-265 (423)
47 PRK11281 hypothetical protein; 96.2 0.8 1.7E-05 50.7 21.5 48 155-202 132-179 (1113)
48 PF05701 WEMBL: Weak chloropla 96.1 1.9 4.1E-05 43.9 23.3 42 238-279 466-510 (522)
49 KOG0933 Structural maintenance 96.1 2.7 5.9E-05 45.8 26.3 16 241-256 925-940 (1174)
50 KOG0963 Transcription factor/C 96.1 2 4.4E-05 44.4 22.0 120 78-197 194-342 (629)
51 PF08614 ATG16: Autophagy prot 96.0 0.21 4.6E-06 44.1 13.4 104 40-151 76-179 (194)
52 PF12128 DUF3584: Protein of u 96.0 2.2 4.7E-05 47.7 24.1 62 39-100 601-662 (1201)
53 PF09304 Cortex-I_coil: Cortex 96.0 0.66 1.4E-05 37.6 15.8 47 116-162 58-104 (107)
54 PF10174 Cast: RIM-binding pro 96.0 2.9 6.3E-05 44.7 23.7 27 57-83 285-311 (775)
55 PF10473 CENP-F_leu_zip: Leuci 95.9 0.94 2E-05 38.5 20.3 57 44-100 9-65 (140)
56 PF04156 IncA: IncA protein; 95.9 0.97 2.1E-05 39.4 16.8 20 116-135 130-149 (191)
57 smart00787 Spc7 Spc7 kinetocho 95.9 1.8 3.8E-05 41.5 20.1 19 215-233 270-288 (312)
58 PF00038 Filament: Intermediat 95.8 1.6 3.5E-05 40.8 25.2 64 40-103 49-112 (312)
59 smart00787 Spc7 Spc7 kinetocho 95.8 0.99 2.2E-05 43.1 17.8 44 56-99 148-191 (312)
60 COG4372 Uncharacterized protei 95.8 2.2 4.7E-05 42.0 22.6 33 119-151 182-214 (499)
61 COG1340 Uncharacterized archae 95.7 2 4.4E-05 40.7 22.8 67 140-206 161-227 (294)
62 PF05667 DUF812: Protein of un 95.7 3.3 7.1E-05 43.0 22.1 142 44-188 320-463 (594)
63 PF08317 Spc7: Spc7 kinetochor 95.6 2.2 4.7E-05 40.8 20.4 28 71-98 147-174 (325)
64 KOG4643 Uncharacterized coiled 95.6 1.7 3.7E-05 47.2 20.0 168 36-206 168-342 (1195)
65 PRK04778 septation ring format 95.6 3.1 6.8E-05 42.7 21.5 25 77-101 314-338 (569)
66 KOG1029 Endocytic adaptor prot 95.5 1.2 2.6E-05 47.2 18.2 59 44-102 408-466 (1118)
67 PRK01156 chromosome segregatio 95.5 3.6 7.7E-05 44.2 22.7 18 42-59 163-180 (895)
68 PF15070 GOLGA2L5: Putative go 95.5 1.1 2.4E-05 46.7 18.0 115 50-166 20-137 (617)
69 PF13851 GAS: Growth-arrest sp 95.5 1.8 3.8E-05 38.8 22.2 101 54-154 29-131 (201)
70 COG4372 Uncharacterized protei 95.5 2.9 6.4E-05 41.2 24.1 55 45-99 88-142 (499)
71 KOG4674 Uncharacterized conser 95.4 2.5 5.3E-05 48.8 21.5 57 43-99 1234-1290(1822)
72 PF05701 WEMBL: Weak chloropla 95.4 3.6 7.7E-05 42.0 22.5 43 149-191 384-426 (522)
73 TIGR01843 type_I_hlyD type I s 95.1 3.3 7.1E-05 39.8 25.0 25 39-63 75-99 (423)
74 PF09730 BicD: Microtubule-ass 95.1 5.4 0.00012 42.3 23.1 160 45-206 265-461 (717)
75 PF04849 HAP1_N: HAP1 N-termin 94.9 3.6 7.9E-05 39.3 21.6 64 40-103 155-222 (306)
76 PF12128 DUF3584: Protein of u 94.7 9.1 0.0002 42.9 31.4 61 43-103 612-672 (1201)
77 TIGR03185 DNA_S_dndD DNA sulfu 94.7 4 8.7E-05 42.5 19.6 42 59-100 391-434 (650)
78 PF15619 Lebercilin: Ciliary p 94.7 3.1 6.6E-05 37.2 22.3 138 44-190 11-157 (194)
79 PF04111 APG6: Autophagy prote 94.6 1.2 2.6E-05 42.5 14.4 65 127-191 68-132 (314)
80 PF12325 TMF_TATA_bd: TATA ele 94.5 2.3 5E-05 35.2 15.0 27 72-98 29-55 (120)
81 PF14662 CCDC155: Coiled-coil 94.5 3.5 7.5E-05 36.9 21.4 48 141-188 141-188 (193)
82 PF15070 GOLGA2L5: Putative go 94.4 7.4 0.00016 40.7 24.8 97 41-137 25-143 (617)
83 PF12329 TMF_DNA_bd: TATA elem 94.4 0.67 1.5E-05 35.1 9.8 68 64-146 3-70 (74)
84 PF06160 EzrA: Septation ring 94.4 7 0.00015 40.2 25.7 139 121-267 349-489 (560)
85 KOG0018 Structural maintenance 94.2 5.5 0.00012 43.7 19.4 29 169-197 867-895 (1141)
86 PF14662 CCDC155: Coiled-coil 94.2 3.9 8.4E-05 36.6 21.8 125 50-186 6-130 (193)
87 TIGR01005 eps_transp_fam exopo 94.2 8.8 0.00019 40.5 21.8 21 171-191 375-395 (754)
88 KOG0977 Nuclear envelope prote 94.1 8 0.00017 39.8 19.9 79 116-194 106-184 (546)
89 PRK11281 hypothetical protein; 94.1 6.4 0.00014 43.8 20.2 31 160-190 222-252 (1113)
90 KOG0980 Actin-binding protein 94.0 11 0.00023 40.8 27.2 34 227-260 612-647 (980)
91 KOG0979 Structural maintenance 93.9 9.8 0.00021 41.6 20.4 60 43-103 179-238 (1072)
92 TIGR03007 pepcterm_ChnLen poly 93.8 8 0.00017 38.6 23.4 59 43-101 166-232 (498)
93 PF05911 DUF869: Plant protein 93.7 11 0.00025 40.3 21.5 163 44-228 588-752 (769)
94 TIGR03007 pepcterm_ChnLen poly 93.7 8.1 0.00018 38.5 20.2 20 171-190 354-373 (498)
95 TIGR01005 eps_transp_fam exopo 93.7 7.1 0.00015 41.2 19.3 44 148-191 356-399 (754)
96 PF05911 DUF869: Plant protein 93.7 8.1 0.00017 41.4 19.5 55 40-94 591-645 (769)
97 KOG0964 Structural maintenance 93.7 13 0.00028 40.7 22.5 73 124-196 419-498 (1200)
98 PF04849 HAP1_N: HAP1 N-termin 93.6 5 0.00011 38.3 16.1 135 36-178 158-296 (306)
99 PF12795 MscS_porin: Mechanose 93.6 5.6 0.00012 36.2 17.9 130 39-168 79-209 (240)
100 KOG0995 Centromere-associated 93.6 9.5 0.00021 39.3 18.8 14 255-268 444-457 (581)
101 PF04728 LPP: Lipoprotein leuc 93.3 0.81 1.7E-05 33.0 7.9 46 74-120 4-49 (56)
102 PF04111 APG6: Autophagy prote 93.1 3.4 7.4E-05 39.4 14.4 68 125-192 52-119 (314)
103 PRK10884 SH3 domain-containing 93.1 2.8 6E-05 37.8 13.0 48 144-191 118-165 (206)
104 PRK10884 SH3 domain-containing 93.0 2.9 6.2E-05 37.7 12.9 21 44-64 92-112 (206)
105 PF10473 CENP-F_leu_zip: Leuci 92.8 5.4 0.00012 33.9 19.7 63 116-178 52-114 (140)
106 KOG4674 Uncharacterized conser 92.8 24 0.00051 41.2 29.2 51 50-100 1234-1284(1822)
107 KOG0980 Actin-binding protein 92.8 17 0.00036 39.4 23.8 17 119-135 469-485 (980)
108 PF12325 TMF_TATA_bd: TATA ele 92.6 5.2 0.00011 33.1 15.4 48 45-99 16-63 (120)
109 KOG0995 Centromere-associated 92.5 14 0.00031 38.0 28.5 41 63-103 284-324 (581)
110 PF07926 TPR_MLP1_2: TPR/MLP1/ 92.5 5.4 0.00012 33.1 19.9 19 162-180 102-120 (132)
111 KOG0612 Rho-associated, coiled 92.4 22 0.00048 39.8 25.6 38 66-103 494-531 (1317)
112 KOG4673 Transcription factor T 92.3 17 0.00038 38.4 22.5 60 40-99 404-465 (961)
113 PF10186 Atg14: UV radiation r 92.2 9.1 0.0002 35.0 19.9 15 47-61 22-36 (302)
114 PF12795 MscS_porin: Mechanose 92.2 8.9 0.00019 34.8 22.6 58 157-214 177-237 (240)
115 KOG0977 Nuclear envelope prote 92.1 16 0.00035 37.6 20.0 83 46-136 100-182 (546)
116 KOG0994 Extracellular matrix g 92.0 25 0.00053 39.5 22.4 46 58-103 1590-1635(1758)
117 TIGR01000 bacteriocin_acc bact 91.7 15 0.00033 36.5 18.1 23 42-64 101-123 (457)
118 PF04582 Reo_sigmaC: Reovirus 91.7 0.43 9.3E-06 45.8 6.2 27 155-181 123-149 (326)
119 KOG0971 Microtubule-associated 91.7 23 0.00051 38.6 21.7 13 226-238 550-562 (1243)
120 PF06008 Laminin_I: Laminin Do 91.6 11 0.00024 34.7 23.8 169 54-226 26-199 (264)
121 KOG0976 Rho/Rac1-interacting s 91.5 23 0.00051 38.2 21.5 44 121-164 328-371 (1265)
122 PF00769 ERM: Ezrin/radixin/mo 91.4 11 0.00025 34.6 18.1 118 58-190 4-121 (246)
123 KOG0804 Cytoplasmic Zn-finger 91.4 17 0.00037 36.5 17.8 47 49-95 329-376 (493)
124 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.2 7.6 0.00017 32.2 19.2 14 147-160 101-114 (132)
125 KOG0018 Structural maintenance 91.2 28 0.00061 38.5 22.4 39 59-97 683-721 (1141)
126 KOG0964 Structural maintenance 91.1 28 0.0006 38.3 28.3 193 40-233 253-477 (1200)
127 PF05384 DegS: Sensor protein 91.1 9.6 0.00021 33.1 21.6 133 51-190 5-151 (159)
128 PF10168 Nup88: Nuclear pore c 91.0 14 0.0003 39.3 17.2 16 181-196 694-709 (717)
129 PF04012 PspA_IM30: PspA/IM30 90.8 11 0.00025 33.5 22.7 54 43-103 28-81 (221)
130 KOG4360 Uncharacterized coiled 90.8 21 0.00046 36.5 18.2 68 117-191 234-301 (596)
131 PF13851 GAS: Growth-arrest sp 90.8 12 0.00025 33.5 21.3 45 46-90 35-79 (201)
132 KOG0971 Microtubule-associated 90.7 29 0.00063 37.9 23.8 10 111-120 373-382 (1243)
133 PF10498 IFT57: Intra-flagella 90.3 11 0.00024 36.8 14.6 44 56-99 217-260 (359)
134 TIGR02680 conserved hypothetic 90.3 38 0.00083 38.6 24.1 20 46-65 231-250 (1353)
135 PF07106 TBPIP: Tat binding pr 90.3 3.9 8.4E-05 35.2 10.4 62 39-100 73-136 (169)
136 COG2433 Uncharacterized conser 90.2 11 0.00024 39.2 14.9 31 155-185 478-508 (652)
137 PF14282 FlxA: FlxA-like prote 90.1 2.9 6.3E-05 33.6 8.9 57 41-100 15-71 (106)
138 KOG0963 Transcription factor/C 90.1 26 0.00057 36.5 20.6 12 124-135 293-304 (629)
139 PF09789 DUF2353: Uncharacteri 89.8 20 0.00042 34.6 17.0 71 124-194 141-225 (319)
140 PF13514 AAA_27: AAA domain 89.8 37 0.00081 37.7 22.4 34 144-177 896-929 (1111)
141 COG2433 Uncharacterized conser 89.7 11 0.00024 39.1 14.5 33 117-149 475-507 (652)
142 PRK10803 tol-pal system protei 89.6 5.9 0.00013 36.8 11.7 63 51-128 39-101 (263)
143 TIGR03185 DNA_S_dndD DNA sulfu 89.4 30 0.00064 36.1 26.6 47 41-87 205-251 (650)
144 KOG0978 E3 ubiquitin ligase in 89.4 32 0.0007 36.5 25.9 82 140-224 562-643 (698)
145 KOG0978 E3 ubiquitin ligase in 89.3 33 0.00071 36.5 21.9 154 42-203 451-618 (698)
146 PF10186 Atg14: UV radiation r 89.3 17 0.00037 33.2 20.4 17 117-133 71-87 (302)
147 KOG0976 Rho/Rac1-interacting s 89.3 36 0.00078 36.9 21.6 60 121-180 349-408 (1265)
148 PF03962 Mnd1: Mnd1 family; I 89.3 15 0.00033 32.5 14.0 60 71-133 67-127 (188)
149 COG5185 HEC1 Protein involved 89.2 21 0.00045 36.3 15.5 39 143-181 374-412 (622)
150 PF04582 Reo_sigmaC: Reovirus 89.2 0.97 2.1E-05 43.5 6.2 48 52-99 49-96 (326)
151 TIGR03017 EpsF chain length de 89.1 24 0.00051 34.6 20.6 14 58-71 177-190 (444)
152 PF01576 Myosin_tail_1: Myosin 88.9 0.12 2.7E-06 55.5 0.0 161 39-200 329-503 (859)
153 PRK04406 hypothetical protein; 88.9 5.1 0.00011 30.4 8.9 51 140-190 7-57 (75)
154 PF04102 SlyX: SlyX; InterPro 88.9 2.9 6.4E-05 31.0 7.4 51 142-192 2-52 (69)
155 PRK15396 murein lipoprotein; P 88.6 4.2 9.1E-05 31.2 8.2 15 1-15 1-15 (78)
156 PF07106 TBPIP: Tat binding pr 88.5 8.3 0.00018 33.1 11.2 33 46-78 73-105 (169)
157 KOG4809 Rab6 GTPase-interactin 88.2 34 0.00074 35.3 18.3 39 61-99 333-371 (654)
158 PRK10929 putative mechanosensi 88.0 51 0.0011 37.0 23.9 36 155-190 198-233 (1109)
159 PF07889 DUF1664: Protein of u 87.9 14 0.0003 30.9 11.6 54 44-100 49-102 (126)
160 PF10481 CENP-F_N: Cenp-F N-te 87.6 26 0.00055 33.2 19.6 46 155-200 92-137 (307)
161 PRK00295 hypothetical protein; 87.6 6 0.00013 29.4 8.3 50 142-191 3-52 (68)
162 PRK02793 phi X174 lysis protei 87.5 5.8 0.00013 29.8 8.3 51 141-191 5-55 (72)
163 KOG0612 Rho-associated, coiled 87.4 56 0.0012 36.8 21.2 83 66-149 465-548 (1317)
164 PRK00736 hypothetical protein; 87.4 5.5 0.00012 29.6 8.1 50 142-191 3-52 (68)
165 PRK02119 hypothetical protein; 87.3 6.4 0.00014 29.7 8.5 52 140-191 5-56 (73)
166 PRK04325 hypothetical protein; 87.3 6.4 0.00014 29.7 8.5 51 141-191 6-56 (74)
167 PF05557 MAD: Mitotic checkpoi 87.1 0.84 1.8E-05 48.1 4.8 51 45-95 343-393 (722)
168 PF05622 HOOK: HOOK protein; 86.5 0.21 4.6E-06 52.5 0.0 17 45-61 246-262 (713)
169 PHA03332 membrane glycoprotein 86.4 57 0.0012 36.3 17.7 35 45-79 884-918 (1328)
170 PRK03947 prefoldin subunit alp 86.3 18 0.00038 30.0 13.8 38 45-82 6-43 (140)
171 PF06818 Fez1: Fez1; InterPro 86.1 26 0.00056 31.7 16.6 43 44-86 37-79 (202)
172 PF15397 DUF4618: Domain of un 86.0 30 0.00066 32.3 21.8 36 161-196 189-224 (258)
173 PF10146 zf-C4H2: Zinc finger- 85.9 28 0.00061 31.9 16.2 36 163-198 65-100 (230)
174 TIGR01000 bacteriocin_acc bact 85.5 41 0.00088 33.4 22.9 33 39-71 91-123 (457)
175 PRK00846 hypothetical protein; 85.5 11 0.00024 28.9 9.0 54 139-192 8-61 (77)
176 PF09755 DUF2046: Uncharacteri 85.4 36 0.00077 32.7 18.8 30 43-72 32-61 (310)
177 KOG1853 LIS1-interacting prote 85.4 33 0.00071 32.2 20.9 100 43-149 25-124 (333)
178 KOG0979 Structural maintenance 85.3 65 0.0014 35.6 25.6 24 243-266 427-450 (1072)
179 COG1382 GimC Prefoldin, chaper 85.2 20 0.00044 29.7 12.7 39 46-84 7-45 (119)
180 PRK02119 hypothetical protein; 85.1 7 0.00015 29.5 7.7 50 48-97 5-54 (73)
181 PRK04406 hypothetical protein; 84.4 9.2 0.0002 29.0 8.1 49 49-97 8-56 (75)
182 PRK03947 prefoldin subunit alp 84.3 22 0.00048 29.4 12.8 33 116-148 101-133 (140)
183 COG1842 PspA Phage shock prote 84.2 33 0.00072 31.3 22.0 10 124-133 100-109 (225)
184 PF04012 PspA_IM30: PspA/IM30 84.1 30 0.00065 30.7 18.2 45 57-101 28-72 (221)
185 PF14282 FlxA: FlxA-like prote 84.0 5.3 0.00012 32.1 7.1 18 118-135 53-70 (106)
186 PF04102 SlyX: SlyX; InterPro 84.0 7 0.00015 29.0 7.2 48 52-99 4-51 (69)
187 TIGR02680 conserved hypothetic 83.9 87 0.0019 35.9 23.5 15 43-57 235-249 (1353)
188 PRK10929 putative mechanosensi 83.5 83 0.0018 35.4 23.5 38 165-202 272-309 (1109)
189 TIGR03017 EpsF chain length de 83.3 48 0.001 32.4 17.9 20 44-63 214-233 (444)
190 PF06810 Phage_GP20: Phage min 83.1 29 0.00063 29.8 12.0 49 50-98 18-69 (155)
191 PF11559 ADIP: Afadin- and alp 82.7 27 0.00059 29.2 17.4 59 42-100 35-93 (151)
192 PRK04325 hypothetical protein; 82.7 10 0.00022 28.7 7.7 49 51-99 8-56 (74)
193 PF09730 BicD: Microtubule-ass 82.7 73 0.0016 34.1 21.3 58 42-99 31-88 (717)
194 PF03148 Tektin: Tektin family 82.6 51 0.0011 32.3 15.3 48 72-120 257-304 (384)
195 KOG1899 LAR transmembrane tyro 82.6 66 0.0014 34.0 15.6 112 36-157 102-215 (861)
196 PF05384 DegS: Sensor protein 82.5 32 0.00069 29.9 21.5 45 44-88 26-70 (159)
197 PF13870 DUF4201: Domain of un 82.4 31 0.00068 29.7 20.7 105 124-228 50-157 (177)
198 PF15066 CAGE1: Cancer-associa 82.2 61 0.0013 32.9 16.3 63 124-186 363-425 (527)
199 PF15619 Lebercilin: Ciliary p 82.0 37 0.0008 30.3 23.4 51 109-159 96-147 (194)
200 PRK09343 prefoldin subunit bet 81.7 28 0.0006 28.6 13.1 18 46-63 8-25 (121)
201 KOG0288 WD40 repeat protein Ti 81.5 61 0.0013 32.4 16.6 53 44-96 12-64 (459)
202 KOG1853 LIS1-interacting prote 81.5 48 0.001 31.2 15.4 20 124-143 92-111 (333)
203 PF12777 MT: Microtubule-bindi 81.4 7.4 0.00016 37.4 8.2 8 205-212 323-330 (344)
204 PF10267 Tmemb_cc2: Predicted 81.2 57 0.0012 32.4 14.3 55 124-178 277-332 (395)
205 KOG4360 Uncharacterized coiled 80.9 71 0.0015 32.8 18.3 81 110-190 206-286 (596)
206 PF02403 Seryl_tRNA_N: Seryl-t 80.6 22 0.00048 28.0 9.5 41 62-102 25-65 (108)
207 PRK10476 multidrug resistance 80.4 54 0.0012 31.1 16.8 27 39-65 80-106 (346)
208 KOG2264 Exostosin EXT1L [Signa 80.4 19 0.00041 37.5 10.8 69 128-196 84-152 (907)
209 PF06160 EzrA: Septation ring 80.2 76 0.0016 32.7 27.8 33 249-282 354-386 (560)
210 PF05622 HOOK: HOOK protein; 80.0 0.55 1.2E-05 49.4 0.0 19 46-64 240-258 (713)
211 PF03148 Tektin: Tektin family 79.9 63 0.0014 31.6 16.7 57 41-97 247-303 (384)
212 TIGR02977 phageshock_pspA phag 79.8 45 0.00098 29.9 22.5 50 43-99 29-78 (219)
213 PRK11546 zraP zinc resistance 79.7 38 0.00083 28.9 11.4 32 47-78 49-80 (143)
214 PRK15396 murein lipoprotein; P 79.6 12 0.00026 28.7 7.2 16 46-61 26-41 (78)
215 COG2900 SlyX Uncharacterized p 79.6 20 0.00043 27.2 8.1 52 140-191 4-55 (72)
216 PF14197 Cep57_CLD_2: Centroso 79.6 23 0.0005 26.4 9.1 55 46-100 6-60 (69)
217 KOG1899 LAR transmembrane tyro 79.5 89 0.0019 33.1 16.9 57 46-102 133-189 (861)
218 PRK00409 recombination and DNA 79.4 53 0.0012 35.3 14.6 26 73-98 502-527 (782)
219 PF00769 ERM: Ezrin/radixin/mo 79.2 52 0.0011 30.3 19.3 112 78-197 3-114 (246)
220 PRK00846 hypothetical protein; 79.2 16 0.00036 27.9 7.8 50 50-99 11-60 (77)
221 PRK09973 putative outer membra 78.8 12 0.00025 29.3 7.0 16 46-61 25-40 (85)
222 PRK00295 hypothetical protein; 78.8 18 0.00039 26.8 7.8 18 46-63 6-23 (68)
223 PF13166 AAA_13: AAA domain 78.6 89 0.0019 32.5 24.6 22 81-102 323-344 (712)
224 PF02050 FliJ: Flagellar FliJ 78.2 29 0.00062 26.7 15.8 28 45-72 12-39 (123)
225 COG0419 SbcC ATPase involved i 78.1 1.1E+02 0.0024 33.3 23.9 74 121-194 366-439 (908)
226 TIGR02231 conserved hypothetic 78.1 50 0.0011 33.4 13.4 21 80-100 71-91 (525)
227 PRK02793 phi X174 lysis protei 78.0 18 0.0004 27.1 7.7 45 53-97 9-53 (72)
228 TIGR01069 mutS2 MutS2 family p 77.9 63 0.0014 34.7 14.5 29 72-100 496-524 (771)
229 COG3206 GumC Uncharacterized p 77.8 77 0.0017 31.4 16.1 62 39-100 240-305 (458)
230 KOG4643 Uncharacterized coiled 77.8 1.2E+02 0.0026 33.7 23.4 43 55-97 404-446 (1195)
231 KOG4603 TBP-1 interacting prot 77.7 51 0.0011 29.3 14.4 38 66-103 79-116 (201)
232 KOG1003 Actin filament-coating 77.4 55 0.0012 29.5 21.7 59 42-100 8-66 (205)
233 PF02994 Transposase_22: L1 tr 77.1 10 0.00022 37.1 7.8 11 88-98 106-116 (370)
234 PF11570 E2R135: Coiled-coil r 77.0 44 0.00095 28.2 13.7 43 42-84 12-54 (136)
235 PF10205 KLRAQ: Predicted coil 76.9 33 0.00072 27.7 9.3 57 44-100 11-67 (102)
236 PRK00736 hypothetical protein; 76.8 20 0.00043 26.6 7.5 27 70-96 23-49 (68)
237 TIGR02231 conserved hypothetic 76.8 41 0.0009 34.0 12.3 31 69-99 74-104 (525)
238 PRK10698 phage shock protein P 76.4 59 0.0013 29.4 22.5 43 42-84 28-70 (222)
239 PF06120 Phage_HK97_TLTM: Tail 76.4 73 0.0016 30.5 20.3 60 44-103 40-104 (301)
240 TIGR02971 heterocyst_DevB ABC 76.4 67 0.0014 30.0 20.6 58 43-100 53-110 (327)
241 PF09755 DUF2046: Uncharacteri 76.1 76 0.0016 30.5 24.8 41 48-88 23-63 (310)
242 PF05335 DUF745: Protein of un 76.1 57 0.0012 29.1 18.2 18 118-135 111-128 (188)
243 KOG2264 Exostosin EXT1L [Signa 75.8 12 0.00027 38.8 8.0 44 57-100 98-141 (907)
244 KOG2991 Splicing regulator [RN 75.4 74 0.0016 30.0 17.3 145 44-188 142-308 (330)
245 KOG0244 Kinesin-like protein [ 75.2 1.3E+02 0.0029 32.9 17.2 47 214-260 614-667 (913)
246 PF10458 Val_tRNA-synt_C: Valy 75.0 20 0.00043 26.1 7.1 25 79-103 3-27 (66)
247 PF10779 XhlA: Haemolysin XhlA 74.8 20 0.00043 26.6 7.1 42 49-90 3-44 (71)
248 COG1730 GIM5 Predicted prefold 74.6 54 0.0012 28.0 15.0 16 46-61 7-22 (145)
249 PRK09343 prefoldin subunit bet 74.2 47 0.001 27.2 14.7 24 76-99 17-40 (121)
250 PF04728 LPP: Lipoprotein leuc 74.2 25 0.00055 25.3 7.1 38 62-99 6-43 (56)
251 PF13166 AAA_13: AAA domain 74.1 1.2E+02 0.0025 31.7 20.7 17 228-244 565-581 (712)
252 PF06008 Laminin_I: Laminin Do 74.0 72 0.0016 29.3 23.9 48 46-93 53-100 (264)
253 PF10481 CENP-F_N: Cenp-F N-te 73.9 83 0.0018 29.9 16.5 28 53-80 19-46 (307)
254 PF10498 IFT57: Intra-flagella 73.6 94 0.002 30.4 16.3 100 71-174 218-317 (359)
255 PF13870 DUF4201: Domain of un 73.6 59 0.0013 28.0 18.7 55 46-100 43-97 (177)
256 PF15450 DUF4631: Domain of un 73.5 1.1E+02 0.0025 31.3 20.6 91 46-139 338-435 (531)
257 PF14362 DUF4407: Domain of un 73.3 80 0.0017 29.4 16.6 12 207-218 260-271 (301)
258 PF08826 DMPK_coil: DMPK coile 73.3 33 0.00072 25.1 9.9 32 105-136 28-59 (61)
259 PF02994 Transposase_22: L1 tr 73.1 15 0.00032 35.9 7.7 33 67-99 99-131 (370)
260 PF12329 TMF_DNA_bd: TATA elem 73.0 37 0.00081 25.5 10.4 56 45-100 5-60 (74)
261 PF06005 DUF904: Protein of un 72.5 39 0.00084 25.4 11.5 25 76-100 7-31 (72)
262 KOG0946 ER-Golgi vesicle-tethe 72.4 1.5E+02 0.0033 32.3 24.0 53 50-102 662-714 (970)
263 PRK10476 multidrug resistance 72.1 90 0.002 29.5 17.8 29 49-77 83-111 (346)
264 TIGR03545 conserved hypothetic 72.0 1E+02 0.0022 32.0 13.8 26 207-241 287-312 (555)
265 COG4026 Uncharacterized protei 72.0 71 0.0015 29.6 11.2 29 72-100 141-169 (290)
266 PF07889 DUF1664: Protein of u 71.2 60 0.0013 27.1 12.6 39 58-99 42-80 (126)
267 COG1729 Uncharacterized protei 71.1 27 0.00058 32.7 8.6 19 46-64 57-75 (262)
268 PF05266 DUF724: Protein of un 70.7 77 0.0017 28.2 14.6 43 58-100 102-144 (190)
269 PF10211 Ax_dynein_light: Axon 70.7 76 0.0016 28.0 12.4 26 74-99 128-153 (189)
270 PF12777 MT: Microtubule-bindi 70.6 1E+02 0.0022 29.6 20.3 34 211-244 286-319 (344)
271 PF10146 zf-C4H2: Zinc finger- 70.4 88 0.0019 28.7 16.1 68 127-194 36-103 (230)
272 PF05483 SCP-1: Synaptonemal c 70.4 1.6E+02 0.0034 31.5 24.2 60 44-103 210-270 (786)
273 PRK09973 putative outer membra 70.2 50 0.0011 25.8 9.2 20 44-63 30-49 (85)
274 PF06810 Phage_GP20: Phage min 70.2 68 0.0015 27.5 10.3 27 118-144 22-48 (155)
275 COG5185 HEC1 Protein involved 70.1 1.3E+02 0.0029 30.7 21.7 23 255-281 485-507 (622)
276 PF08647 BRE1: BRE1 E3 ubiquit 70.1 51 0.0011 25.8 13.5 39 61-99 5-43 (96)
277 COG2900 SlyX Uncharacterized p 69.9 39 0.00085 25.6 7.6 52 49-100 5-56 (72)
278 KOG2751 Beclin-like protein [S 69.6 1.3E+02 0.0028 30.3 15.0 68 121-188 181-248 (447)
279 PRK10780 periplasmic chaperone 69.6 71 0.0015 27.3 15.2 17 47-63 38-54 (165)
280 PF06005 DUF904: Protein of un 69.4 46 0.00099 25.0 11.4 17 84-100 8-24 (72)
281 PF11853 DUF3373: Protein of u 69.4 6.9 0.00015 39.7 4.6 18 46-63 32-49 (489)
282 PF07851 TMPIT: TMPIT-like pro 69.0 82 0.0018 30.6 11.6 46 139-184 13-58 (330)
283 TIGR01069 mutS2 MutS2 family p 68.9 1.7E+02 0.0037 31.5 17.0 12 273-284 707-718 (771)
284 KOG1962 B-cell receptor-associ 68.7 72 0.0016 29.1 10.6 18 185-202 192-209 (216)
285 KOG0243 Kinesin-like protein [ 68.7 2E+02 0.0043 32.1 25.5 36 155-190 536-571 (1041)
286 PF14197 Cep57_CLD_2: Centroso 68.6 46 0.001 24.8 9.8 22 111-132 42-63 (69)
287 TIGR01010 BexC_CtrB_KpsE polys 68.6 1.1E+02 0.0024 29.2 15.4 20 171-190 277-296 (362)
288 PF08172 CASP_C: CASP C termin 68.6 81 0.0018 29.2 11.2 43 124-166 80-122 (248)
289 PF10805 DUF2730: Protein of u 68.3 23 0.0005 28.4 6.7 49 44-92 41-91 (106)
290 KOG0243 Kinesin-like protein [ 68.2 2E+02 0.0044 32.1 22.8 16 175-190 542-557 (1041)
291 PF05377 FlaC_arch: Flagella a 68.1 24 0.00051 25.4 5.8 24 72-95 13-36 (55)
292 PF04859 DUF641: Plant protein 67.7 21 0.00046 30.0 6.5 42 43-84 78-119 (131)
293 PF05483 SCP-1: Synaptonemal c 67.5 1.8E+02 0.0039 31.1 24.4 23 140-162 548-570 (786)
294 PF15397 DUF4618: Domain of un 67.5 1.1E+02 0.0024 28.7 21.7 38 165-202 186-223 (258)
295 COG1730 GIM5 Predicted prefold 67.4 79 0.0017 27.0 14.8 11 125-135 96-106 (145)
296 PRK13729 conjugal transfer pil 67.2 37 0.0008 34.4 9.2 27 116-142 76-102 (475)
297 TIGR03752 conj_TIGR03752 integ 66.7 84 0.0018 31.9 11.5 30 70-99 56-85 (472)
298 TIGR00414 serS seryl-tRNA synt 66.7 92 0.002 30.9 11.9 35 65-99 29-63 (418)
299 PF06785 UPF0242: Uncharacteri 66.6 1.3E+02 0.0029 29.3 15.9 77 69-146 81-157 (401)
300 PRK10361 DNA recombination pro 66.5 1.6E+02 0.0034 30.1 23.6 43 175-217 168-213 (475)
301 PRK05431 seryl-tRNA synthetase 66.0 53 0.0012 32.6 10.1 35 65-99 27-61 (425)
302 TIGR02977 phageshock_pspA phag 65.9 1E+02 0.0022 27.7 19.2 46 58-103 30-75 (219)
303 PF15294 Leu_zip: Leucine zipp 65.8 1.2E+02 0.0027 28.7 15.0 20 160-179 255-274 (278)
304 cd00584 Prefoldin_alpha Prefol 65.5 72 0.0016 25.8 11.3 31 116-146 94-124 (129)
305 PF10212 TTKRSYEDQ: Predicted 65.0 1.7E+02 0.0038 30.1 15.0 40 139-178 475-514 (518)
306 PF11471 Sugarporin_N: Maltopo 64.9 43 0.00093 24.3 6.8 27 43-69 30-56 (60)
307 KOG1003 Actin filament-coating 64.4 1.1E+02 0.0024 27.6 24.0 50 46-95 5-54 (205)
308 TIGR03545 conserved hypothetic 64.3 1.2E+02 0.0026 31.4 12.5 16 224-239 288-303 (555)
309 PF05531 NPV_P10: Nucleopolyhe 64.1 53 0.0011 25.1 7.4 23 78-100 40-62 (75)
310 COG4026 Uncharacterized protei 64.0 1.1E+02 0.0025 28.3 10.8 9 230-238 237-245 (290)
311 TIGR00293 prefoldin, archaeal 63.5 52 0.0011 26.6 8.0 27 52-78 6-32 (126)
312 KOG0288 WD40 repeat protein Ti 63.5 1.7E+02 0.0037 29.4 16.3 45 56-100 3-47 (459)
313 PF10805 DUF2730: Protein of u 63.4 76 0.0016 25.4 9.3 55 45-99 35-91 (106)
314 COG1842 PspA Phage shock prote 63.2 1.2E+02 0.0026 27.7 22.3 38 142-179 97-134 (225)
315 PF04949 Transcrip_act: Transc 62.7 1E+02 0.0022 26.7 11.1 14 82-95 121-134 (159)
316 PF05103 DivIVA: DivIVA protei 62.7 3.8 8.1E-05 33.3 1.1 51 43-93 23-73 (131)
317 PRK00106 hypothetical protein; 62.6 1.9E+02 0.0042 29.8 20.2 138 44-202 67-208 (535)
318 PF04375 HemX: HemX; InterPro 62.3 1.2E+02 0.0026 29.5 11.7 13 249-261 301-313 (372)
319 TIGR00998 8a0101 efflux pump m 62.1 1.4E+02 0.0029 27.9 17.6 44 39-82 74-117 (334)
320 TIGR00634 recN DNA repair prot 62.1 1.9E+02 0.0042 29.6 16.9 39 111-149 303-341 (563)
321 KOG1937 Uncharacterized conser 61.7 1.9E+02 0.0041 29.4 20.1 9 47-55 233-241 (521)
322 PRK09841 cryptic autophosphory 61.7 2.2E+02 0.0048 30.2 19.1 44 143-190 345-388 (726)
323 PF03978 Borrelia_REV: Borreli 61.0 1.1E+02 0.0024 26.5 11.7 17 3-19 6-22 (160)
324 PF15290 Syntaphilin: Golgi-lo 60.9 1.6E+02 0.0034 28.2 13.6 32 69-100 71-102 (305)
325 PRK15422 septal ring assembly 60.8 75 0.0016 24.5 11.1 26 75-100 6-31 (79)
326 PF11180 DUF2968: Protein of u 60.7 1.3E+02 0.0028 27.1 12.8 75 49-131 109-183 (192)
327 PF05557 MAD: Mitotic checkpoi 60.6 2.8 6.1E-05 44.2 0.0 12 49-60 65-76 (722)
328 TIGR03794 NHPM_micro_HlyD NHPM 59.7 1.8E+02 0.0039 28.4 19.8 28 39-66 90-117 (421)
329 COG1382 GimC Prefoldin, chaper 59.5 1E+02 0.0022 25.6 14.7 11 60-70 28-38 (119)
330 PF05010 TACC: Transforming ac 59.3 1.4E+02 0.003 27.0 24.1 33 168-200 157-189 (207)
331 PLN02678 seryl-tRNA synthetase 58.6 87 0.0019 31.6 10.1 35 65-99 32-66 (448)
332 TIGR00293 prefoldin, archaeal 58.5 96 0.0021 25.0 11.7 26 116-141 93-118 (126)
333 cd00632 Prefoldin_beta Prefold 58.4 89 0.0019 24.6 13.8 35 126-160 66-100 (105)
334 PRK09841 cryptic autophosphory 58.4 2.5E+02 0.0055 29.8 19.4 35 51-85 259-293 (726)
335 PHA01750 hypothetical protein 57.7 18 0.0004 27.0 3.8 32 43-74 40-71 (75)
336 PF08581 Tup_N: Tup N-terminal 57.7 85 0.0018 24.1 12.4 72 122-196 3-74 (79)
337 PF05529 Bap31: B-cell recepto 57.3 77 0.0017 27.6 8.6 6 121-126 180-185 (192)
338 PF06103 DUF948: Bacterial pro 57.1 84 0.0018 23.9 8.7 55 45-99 26-80 (90)
339 PF07851 TMPIT: TMPIT-like pro 57.0 1.9E+02 0.0042 28.0 12.0 58 44-101 3-60 (330)
340 PRK00888 ftsB cell division pr 56.7 91 0.002 25.0 8.1 10 49-58 31-40 (105)
341 PRK11519 tyrosine kinase; Prov 55.7 2.8E+02 0.006 29.4 18.6 12 259-270 510-521 (719)
342 KOG2391 Vacuolar sorting prote 55.4 81 0.0018 30.8 8.8 54 45-98 225-278 (365)
343 cd00890 Prefoldin Prefoldin is 55.3 1.1E+02 0.0023 24.4 11.2 19 117-135 95-113 (129)
344 PF15290 Syntaphilin: Golgi-lo 55.2 2E+02 0.0042 27.5 14.2 46 43-88 59-104 (305)
345 PF13514 AAA_27: AAA domain 55.0 3.4E+02 0.0074 30.3 26.3 19 221-239 966-984 (1111)
346 COG3879 Uncharacterized protei 54.5 96 0.0021 28.9 8.9 29 42-70 54-82 (247)
347 KOG2751 Beclin-like protein [S 54.0 2.5E+02 0.0054 28.3 14.1 69 124-192 198-266 (447)
348 PF09738 DUF2051: Double stran 53.9 2.1E+02 0.0045 27.4 14.1 28 46-73 78-105 (302)
349 KOG1962 B-cell receptor-associ 53.8 1.4E+02 0.003 27.3 9.6 56 129-184 150-205 (216)
350 KOG0946 ER-Golgi vesicle-tethe 53.5 3.4E+02 0.0073 29.8 23.4 45 50-94 669-713 (970)
351 PF04912 Dynamitin: Dynamitin 53.5 2.2E+02 0.0049 27.7 19.0 18 44-61 208-225 (388)
352 PF01920 Prefoldin_2: Prefoldi 52.3 1E+02 0.0023 23.5 10.6 29 127-155 66-94 (106)
353 KOG2129 Uncharacterized conser 52.1 2.7E+02 0.0058 28.2 21.2 16 43-58 134-149 (552)
354 TIGR02971 heterocyst_DevB ABC 52.0 2E+02 0.0044 26.7 18.4 57 44-100 61-117 (327)
355 PF02403 Seryl_tRNA_N: Seryl-t 52.0 1.1E+02 0.0025 23.9 9.7 66 125-190 31-99 (108)
356 KOG3634 Troponin [Cytoskeleton 51.7 43 0.00093 32.5 6.3 67 150-216 236-303 (361)
357 TIGR00998 8a0101 efflux pump m 51.4 2E+02 0.0044 26.6 18.0 49 48-96 76-124 (334)
358 PF06120 Phage_HK97_TLTM: Tail 51.2 2.3E+02 0.005 27.1 20.6 56 43-100 53-108 (301)
359 TIGR03495 phage_LysB phage lys 50.8 1.5E+02 0.0033 25.0 13.5 8 50-57 24-31 (135)
360 PRK10920 putative uroporphyrin 50.4 1.3E+02 0.0027 29.9 9.6 84 2-103 35-122 (390)
361 PF10212 TTKRSYEDQ: Predicted 49.9 3.1E+02 0.0067 28.3 13.8 56 45-100 420-475 (518)
362 COG4238 Murein lipoprotein [Ce 49.3 1.2E+02 0.0026 23.3 7.1 34 66-99 32-65 (78)
363 PF05008 V-SNARE: Vesicle tran 49.2 1E+02 0.0023 22.6 9.7 57 70-133 22-78 (79)
364 KOG1103 Predicted coiled-coil 49.2 2.8E+02 0.006 27.5 13.2 46 40-85 141-186 (561)
365 PF13805 Pil1: Eisosome compon 49.2 2.4E+02 0.0051 26.7 16.0 62 79-143 95-158 (271)
366 PRK06975 bifunctional uroporph 48.5 3.5E+02 0.0076 28.5 17.3 55 43-100 344-398 (656)
367 PLN02320 seryl-tRNA synthetase 48.5 1.8E+02 0.004 29.8 10.6 34 65-98 92-125 (502)
368 PF00509 Hemagglutinin: Haemag 48.5 19 0.00042 36.9 3.7 65 36-103 362-426 (550)
369 cd00890 Prefoldin Prefoldin is 48.4 1.4E+02 0.003 23.8 13.0 19 127-145 91-109 (129)
370 PF05335 DUF745: Protein of un 48.0 2E+02 0.0044 25.6 18.8 69 116-184 102-170 (188)
371 PF09787 Golgin_A5: Golgin sub 47.9 3.2E+02 0.0069 27.8 25.2 74 117-190 215-306 (511)
372 PF08232 Striatin: Striatin fa 47.7 1.7E+02 0.0036 24.5 9.7 62 127-188 8-69 (134)
373 PF05791 Bacillus_HBL: Bacillu 47.7 1.9E+02 0.0042 25.2 13.8 69 116-187 110-178 (184)
374 KOG2391 Vacuolar sorting prote 47.6 2.6E+02 0.0056 27.4 10.8 53 117-169 226-278 (365)
375 PRK10803 tol-pal system protei 47.5 2E+02 0.0043 26.6 10.0 6 213-218 185-190 (263)
376 PF10779 XhlA: Haemolysin XhlA 47.4 1.1E+02 0.0024 22.5 7.2 13 67-79 14-26 (71)
377 PRK05431 seryl-tRNA synthetase 47.3 85 0.0018 31.2 8.0 20 255-274 231-250 (425)
378 TIGR00634 recN DNA repair prot 47.0 3.4E+02 0.0073 27.8 16.1 28 43-70 173-200 (563)
379 PF14193 DUF4315: Domain of un 47.0 71 0.0015 24.7 5.8 31 125-155 3-33 (83)
380 PF08581 Tup_N: Tup N-terminal 46.9 1.3E+02 0.0028 23.0 11.2 48 48-95 7-54 (79)
381 PF02097 Filo_VP35: Filovirida 46.6 6.5 0.00014 37.1 0.0 80 157-237 68-152 (321)
382 PF13863 DUF4200: Domain of un 46.6 1.5E+02 0.0032 23.7 18.3 17 71-87 26-42 (126)
383 PF05103 DivIVA: DivIVA protei 46.0 16 0.00034 29.5 2.2 34 70-103 22-55 (131)
384 PF10458 Val_tRNA-synt_C: Valy 45.9 1.1E+02 0.0025 22.1 7.1 25 72-96 3-27 (66)
385 PF06717 DUF1202: Protein of u 45.5 2.8E+02 0.0061 26.5 15.8 44 39-82 132-175 (308)
386 PRK11032 hypothetical protein; 45.3 1.7E+02 0.0037 25.4 8.5 17 207-223 83-99 (160)
387 PF14992 TMCO5: TMCO5 family 44.8 2.8E+02 0.0061 26.3 16.0 20 45-64 25-44 (280)
388 PF07172 GRP: Glycine rich pro 44.2 26 0.00055 27.8 3.0 14 1-15 1-15 (95)
389 KOG2129 Uncharacterized conser 44.2 3.6E+02 0.0077 27.3 17.3 69 124-192 202-298 (552)
390 PF09738 DUF2051: Double stran 43.5 3E+02 0.0065 26.3 15.8 47 53-99 106-152 (302)
391 PRK10869 recombination and rep 43.4 3.9E+02 0.0084 27.5 16.9 40 110-149 297-336 (553)
392 PF14915 CCDC144C: CCDC144C pr 43.2 3.1E+02 0.0067 26.3 24.4 47 57-103 54-100 (305)
393 PF05010 TACC: Transforming ac 43.2 2.5E+02 0.0055 25.3 23.9 19 117-135 98-116 (207)
394 PLN02678 seryl-tRNA synthetase 42.8 1.3E+02 0.0027 30.4 8.4 23 117-139 79-101 (448)
395 COG1729 Uncharacterized protei 42.8 94 0.002 29.2 7.0 19 69-87 59-77 (262)
396 PF15456 Uds1: Up-regulated Du 42.6 2E+02 0.0043 23.9 11.3 15 46-60 23-37 (124)
397 KOG2077 JNK/SAPK-associated pr 42.5 4.4E+02 0.0095 27.9 15.3 97 82-186 331-427 (832)
398 cd00584 Prefoldin_alpha Prefol 42.5 1.8E+02 0.0039 23.4 12.7 32 125-156 89-120 (129)
399 PF12761 End3: Actin cytoskele 42.3 2.5E+02 0.0053 25.3 9.3 93 43-143 101-194 (195)
400 PF00170 bZIP_1: bZIP transcri 42.2 1.2E+02 0.0027 21.5 6.3 31 69-99 29-59 (64)
401 PF06818 Fez1: Fez1; InterPro 42.1 2.6E+02 0.0057 25.2 20.1 44 50-93 15-58 (202)
402 PF10267 Tmemb_cc2: Predicted 42.0 3.6E+02 0.0079 26.8 20.8 49 124-178 270-318 (395)
403 PF09728 Taxilin: Myosin-like 41.8 3.2E+02 0.0069 26.1 22.5 69 124-192 238-306 (309)
404 PF02388 FemAB: FemAB family; 41.5 1E+02 0.0022 30.3 7.5 50 46-99 243-292 (406)
405 PF05529 Bap31: B-cell recepto 41.4 2.4E+02 0.0051 24.5 9.8 12 87-98 125-136 (192)
406 PF04645 DUF603: Protein of un 41.4 1.6E+02 0.0036 26.0 7.8 30 71-100 103-132 (181)
407 PF04977 DivIC: Septum formati 41.4 73 0.0016 23.1 5.0 9 49-57 21-29 (80)
408 PF00170 bZIP_1: bZIP transcri 41.0 1.2E+02 0.0027 21.5 6.1 28 73-100 26-53 (64)
409 TIGR01554 major_cap_HK97 phage 40.8 1.6E+02 0.0035 28.3 8.7 14 207-220 116-129 (378)
410 KOG0244 Kinesin-like protein [ 40.7 5.4E+02 0.012 28.4 16.3 61 43-103 472-532 (913)
411 PF05266 DUF724: Protein of un 40.7 2.6E+02 0.0057 24.8 16.7 54 138-191 125-178 (190)
412 PRK10636 putative ABC transpor 40.7 1.9E+02 0.0041 30.2 9.6 33 160-192 600-632 (638)
413 COG3206 GumC Uncharacterized p 40.6 3.7E+02 0.0081 26.6 18.8 147 41-192 235-393 (458)
414 KOG3990 Uncharacterized conser 40.4 3E+02 0.0065 26.0 9.7 30 47-76 227-256 (305)
415 PF11570 E2R135: Coiled-coil r 40.3 2.3E+02 0.0049 24.0 13.7 11 125-135 79-89 (136)
416 PF08657 DASH_Spc34: DASH comp 40.1 1.6E+02 0.0036 27.4 8.2 34 70-103 177-210 (259)
417 PF13863 DUF4200: Domain of un 39.8 1.9E+02 0.0042 23.0 17.9 40 47-86 9-48 (126)
418 PF04108 APG17: Autophagy prot 39.7 3.8E+02 0.0083 26.4 24.5 39 174-212 362-400 (412)
419 KOG4673 Transcription factor T 39.2 5.3E+02 0.012 27.9 28.3 56 46-101 447-509 (961)
420 KOG3433 Protein involved in me 39.0 2.9E+02 0.0063 24.8 12.4 28 50-77 79-106 (203)
421 PF14712 Snapin_Pallidin: Snap 39.0 1.7E+02 0.0037 22.1 10.2 32 45-76 14-45 (92)
422 PRK11519 tyrosine kinase; Prov 38.9 5E+02 0.011 27.5 19.7 21 170-190 368-388 (719)
423 COG5570 Uncharacterized small 38.8 1.3E+02 0.0027 21.6 5.4 37 44-80 4-40 (57)
424 PRK06569 F0F1 ATP synthase sub 38.7 2.6E+02 0.0056 24.2 9.6 61 142-202 39-100 (155)
425 COG2959 HemX Uncharacterized e 38.4 3.4E+02 0.0074 26.9 10.2 83 2-102 31-119 (391)
426 PF04508 Pox_A_type_inc: Viral 38.4 45 0.00098 19.8 2.7 18 46-63 2-19 (23)
427 PRK13182 racA polar chromosome 38.1 2.7E+02 0.0058 24.4 8.8 53 46-98 86-143 (175)
428 PF13874 Nup54: Nucleoporin co 38.0 2.4E+02 0.0051 23.5 8.8 64 39-102 31-101 (141)
429 PF15294 Leu_zip: Leucine zipp 37.7 3.6E+02 0.0079 25.6 21.2 71 121-191 130-209 (278)
430 COG3937 Uncharacterized conser 37.7 2E+02 0.0043 23.5 7.2 19 114-132 88-106 (108)
431 PF03961 DUF342: Protein of un 37.6 2.3E+02 0.0049 28.2 9.3 21 169-189 386-406 (451)
432 PF13094 CENP-Q: CENP-Q, a CEN 37.6 2.5E+02 0.0054 23.7 8.6 55 46-100 21-75 (160)
433 PF03961 DUF342: Protein of un 36.9 2.2E+02 0.0048 28.2 9.2 18 44-61 333-350 (451)
434 PF14257 DUF4349: Domain of un 36.9 2.3E+02 0.005 25.8 8.7 21 169-189 173-193 (262)
435 PHA03332 membrane glycoprotein 36.6 6.8E+02 0.015 28.4 14.5 18 109-126 930-947 (1328)
436 KOG3990 Uncharacterized conser 36.6 1.8E+02 0.0039 27.4 7.7 36 52-87 225-260 (305)
437 KOG2685 Cystoskeletal protein 36.6 4.5E+02 0.0098 26.4 13.7 41 158-198 351-391 (421)
438 PF08172 CASP_C: CASP C termin 36.5 3.5E+02 0.0076 25.0 11.8 25 116-140 93-117 (248)
439 KOG0999 Microtubule-associated 36.4 5.4E+02 0.012 27.1 27.9 155 44-198 7-182 (772)
440 COG3074 Uncharacterized protei 36.4 1.9E+02 0.0041 21.9 10.3 26 76-101 7-32 (79)
441 PF03915 AIP3: Actin interacti 36.2 4.6E+02 0.01 26.3 15.5 142 45-191 151-311 (424)
442 PF09789 DUF2353: Uncharacteri 36.2 4.1E+02 0.0089 25.7 20.0 13 46-58 24-36 (319)
443 COG4477 EzrA Negative regulato 36.2 5.2E+02 0.011 26.9 23.7 84 123-206 354-437 (570)
444 PRK10869 recombination and rep 35.9 5.1E+02 0.011 26.7 19.1 16 140-155 299-314 (553)
445 KOG4552 Vitamin-D-receptor int 35.7 3.5E+02 0.0076 24.8 10.3 51 154-204 70-120 (272)
446 PRK11546 zraP zinc resistance 35.5 2.8E+02 0.0061 23.7 9.0 21 117-137 90-110 (143)
447 PRK14127 cell division protein 35.3 1.8E+02 0.0039 23.7 6.8 9 117-125 93-101 (109)
448 TIGR00414 serS seryl-tRNA synt 34.9 4.2E+02 0.009 26.3 10.6 25 166-190 77-101 (418)
449 TIGR01554 major_cap_HK97 phage 34.9 1.7E+02 0.0036 28.2 7.7 15 50-64 4-18 (378)
450 PF09403 FadA: Adhesion protei 34.6 2.7E+02 0.0059 23.2 14.8 86 83-179 23-121 (126)
451 PF14915 CCDC144C: CCDC144C pr 34.4 4.3E+02 0.0093 25.4 21.8 15 109-123 186-200 (305)
452 PF06428 Sec2p: GDP/GTP exchan 34.4 57 0.0012 26.1 3.7 19 57-75 13-31 (100)
453 PRK13182 racA polar chromosome 34.4 3.2E+02 0.0069 23.9 9.5 15 82-96 101-115 (175)
454 PF07544 Med9: RNA polymerase 34.2 2.1E+02 0.0045 21.8 7.1 53 140-192 24-79 (83)
455 smart00338 BRLZ basic region l 34.2 1.7E+02 0.0037 20.8 5.9 30 69-98 29-58 (65)
456 COG0497 RecN ATPase involved i 34.0 5.7E+02 0.012 26.7 16.4 39 111-149 299-337 (557)
457 COG4768 Uncharacterized protei 33.9 3E+02 0.0064 23.4 9.4 55 45-99 31-85 (139)
458 KOG0249 LAR-interacting protei 33.7 6.5E+02 0.014 27.3 19.4 38 159-196 217-254 (916)
459 PRK10636 putative ABC transpor 33.3 3.5E+02 0.0077 28.2 10.3 21 81-101 564-584 (638)
460 PF08647 BRE1: BRE1 E3 ubiquit 33.2 2.4E+02 0.0051 22.1 13.5 14 83-96 20-33 (96)
461 TIGR02894 DNA_bind_RsfA transc 33.1 3.3E+02 0.0072 23.8 9.2 13 87-99 111-123 (161)
462 KOG2077 JNK/SAPK-associated pr 32.6 5.4E+02 0.012 27.3 10.9 89 123-211 301-389 (832)
463 PRK04098 sec-independent trans 32.5 36 0.00078 29.6 2.4 102 1-103 4-111 (158)
464 PF08657 DASH_Spc34: DASH comp 32.4 1.6E+02 0.0035 27.5 6.8 53 41-93 183-259 (259)
465 PTZ00419 valyl-tRNA synthetase 32.3 1.9E+02 0.004 32.0 8.3 62 78-139 927-994 (995)
466 smart00502 BBC B-Box C-termina 32.2 2.4E+02 0.0051 21.7 15.9 98 70-175 4-103 (127)
467 PF06632 XRCC4: DNA double-str 32.2 3.5E+02 0.0076 26.3 9.3 59 42-100 148-207 (342)
468 PF04859 DUF641: Plant protein 32.2 1.6E+02 0.0035 24.8 6.1 47 57-103 78-124 (131)
469 PRK15422 septal ring assembly 32.0 2.4E+02 0.0052 21.8 10.1 67 47-121 6-72 (79)
470 PRK14011 prefoldin subunit alp 31.8 3.2E+02 0.007 23.2 12.5 92 64-155 1-138 (144)
471 TIGR03495 phage_LysB phage lys 31.7 3.2E+02 0.0069 23.1 11.1 77 60-137 20-96 (135)
472 KOG4460 Nuclear pore complex, 31.4 6.4E+02 0.014 26.5 19.0 141 41-181 584-739 (741)
473 KOG2991 Splicing regulator [RN 31.2 4.6E+02 0.01 24.9 21.2 163 33-195 96-308 (330)
474 PF13747 DUF4164: Domain of un 31.2 2.5E+02 0.0055 21.8 12.2 80 84-168 5-84 (89)
475 PF03962 Mnd1: Mnd1 family; I 31.1 3.7E+02 0.008 23.7 12.8 101 45-148 62-167 (188)
476 PF07989 Microtub_assoc: Micro 30.4 2.4E+02 0.0052 21.3 9.6 73 68-140 2-74 (75)
477 KOG0962 DNA repair protein RAD 30.2 9.1E+02 0.02 27.9 22.8 150 43-194 214-375 (1294)
478 PRK00106 hypothetical protein; 29.9 6.5E+02 0.014 26.1 22.6 152 47-201 48-203 (535)
479 PF12999 PRKCSH-like: Glucosid 29.9 2.9E+02 0.0063 24.4 7.6 52 51-102 124-175 (176)
480 PF04645 DUF603: Protein of un 29.5 3.6E+02 0.0079 23.9 8.0 59 60-118 106-169 (181)
481 PF10211 Ax_dynein_light: Axon 29.4 3.9E+02 0.0086 23.5 15.9 104 81-184 85-189 (189)
482 PF14362 DUF4407: Domain of un 29.4 4.6E+02 0.01 24.3 15.5 142 48-214 108-267 (301)
483 PF02050 FliJ: Flagellar FliJ 29.0 2.6E+02 0.0055 21.2 17.2 111 48-173 1-116 (123)
484 PF14073 Cep57_CLD: Centrosome 28.8 4.2E+02 0.009 23.5 20.2 149 42-194 1-153 (178)
485 KOG0962 DNA repair protein RAD 28.6 9.6E+02 0.021 27.7 25.4 230 45-283 199-430 (1294)
486 PF05278 PEARLI-4: Arabidopsis 28.6 5.1E+02 0.011 24.5 14.9 105 42-162 156-260 (269)
487 PF09763 Sec3_C: Exocyst compl 28.5 7.2E+02 0.016 26.2 12.6 92 61-163 7-98 (701)
488 PHA02621 agnoprotein; Provisio 28.5 56 0.0012 23.9 2.4 25 2-26 24-48 (68)
489 PF15456 Uds1: Up-regulated Du 28.4 3.4E+02 0.0074 22.4 12.3 75 115-190 21-113 (124)
490 PRK05729 valS valyl-tRNA synth 28.3 2E+02 0.0043 31.3 7.7 59 78-136 809-873 (874)
491 smart00338 BRLZ basic region l 28.3 2.2E+02 0.0048 20.2 5.8 39 44-82 25-63 (65)
492 PF08181 DegQ: DegQ (SacQ) fam 28.2 1.9E+02 0.0042 19.6 4.7 37 44-80 3-39 (46)
493 PF07544 Med9: RNA polymerase 28.2 2.7E+02 0.0058 21.2 6.9 61 36-96 19-82 (83)
494 PF12761 End3: Actin cytoskele 28.1 4.5E+02 0.0097 23.7 10.8 88 67-158 97-195 (195)
495 PHA03011 hypothetical protein; 28.1 3.3E+02 0.0071 22.1 7.5 60 38-97 57-116 (120)
496 PRK03598 putative efflux pump 27.9 5E+02 0.011 24.2 16.5 118 39-177 75-204 (331)
497 PF14235 DUF4337: Domain of un 27.9 1.8E+02 0.0038 25.1 5.9 37 121-157 71-107 (157)
498 PF08826 DMPK_coil: DMPK coile 27.9 2.4E+02 0.0053 20.5 7.9 48 126-173 14-61 (61)
499 KOG0614 cGMP-dependent protein 27.7 2.1E+02 0.0046 29.9 7.2 53 48-100 20-72 (732)
500 COG4477 EzrA Negative regulato 27.7 7.2E+02 0.016 25.9 20.1 155 39-193 275-431 (570)
No 1
>PRK11637 AmiB activator; Provisional
Probab=99.26 E-value=4.4e-09 Score=103.20 Aligned_cols=145 Identities=18% Similarity=0.315 Sum_probs=80.4
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHH
Q 023185 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-----TLNAAEQVDKAH 115 (286)
Q Consensus 41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-----~~~~~eqi~ka~ 115 (286)
..+++++++++.++..++++++++..+|..++.+|..++..|+.++.+|..++.+|+.++.++ .++..+..++
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~-- 127 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA-- 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 334555555555555555666666666666666666666666666666666666666666555 2222222222
Q ss_pred HHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEK-----------------------------------QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (286)
Q Consensus 116 ~Ri~eLek-----------------------------------~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~ 160 (286)
.|++.+.+ .|+.+......+...+..|+....+++..+.++....
T Consensus 128 ~rlra~Y~~g~~~~l~vLl~a~~~~~~~r~~~~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k 207 (428)
T PRK11637 128 AQLDAAFRQGEHTGLQLILSGEESQRGERILAYFGYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQ 207 (428)
T ss_pred HHHHHHHHcCCCcHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444211 5666666666666666666666666666555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 161 EKLQKINDEQKSKIRKTERALKVAEEE 187 (286)
Q Consensus 161 ~~Lek~~~Eqk~~i~~lE~~lq~~Eee 187 (286)
..|+....+++..+..++...+..+.+
T Consensus 208 ~~L~~~k~e~~~~l~~L~~~~~~~~~~ 234 (428)
T PRK11637 208 QKLEQARNERKKTLTGLESSLQKDQQQ 234 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444444444444333333
No 2
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.05 E-value=1.9e-07 Score=86.34 Aligned_cols=143 Identities=17% Similarity=0.280 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK-- 123 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek-- 123 (286)
+++++......++.+++.+..++.+...+++..+.+++....+|..++.+|+.+.. .+..+.++++ +|+|.++.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~--~I~~r~~~l~--~raRAmq~nG 114 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE--NIVERQELLK--KRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH--HHHHHHHHcC
Confidence 33333333333333333333333333333333333333333344444444433332 3455667777 78888544
Q ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 124 ----------------------------------QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDE 169 (286)
Q Consensus 124 ----------------------------------~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~E 169 (286)
+|+..+.+...+..+...++.....+.....+++..+..|+..+.+
T Consensus 115 ~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e 194 (265)
T COG3883 115 TATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAE 194 (265)
T ss_pred ChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023185 170 QKSKIRKTERALKVAEEEMMRAK 192 (286)
Q Consensus 170 qk~~i~~lE~~lq~~Eeei~kle 192 (286)
++..+..+......+..+...+.
T Consensus 195 ~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 195 KNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999998888888877766
No 3
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.57 E-value=5.2e-05 Score=74.30 Aligned_cols=160 Identities=19% Similarity=0.285 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHH------
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKAHAR------ 117 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-~~~~~eqi~ka~~R------ 117 (286)
+++++.+++|.++++.+....++...+...|...+++|..++.+|......++.+.+.+ ..+..-..+.-+.|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666655555554 11111111111111
Q ss_pred ---HHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 118 ---ADE-----------------------------------LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK 159 (286)
Q Consensus 118 ---i~e-----------------------------------Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k 159 (286)
+.. +...|+.|.++...+..-...+++.+.++...+.+....
T Consensus 118 a~~L~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q 197 (420)
T COG4942 118 AEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQ 197 (420)
T ss_pred HHHHHHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 112788888888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Q 023185 160 LEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204 (286)
Q Consensus 160 ~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql~~ 204 (286)
...+.....|++....+++..+..-+..+..+......+...|..
T Consensus 198 ~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias 242 (420)
T COG4942 198 QAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIAS 242 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999999888888888887777777666643
No 4
>PRK11637 AmiB activator; Provisional
Probab=98.44 E-value=0.00013 Score=71.80 Aligned_cols=152 Identities=14% Similarity=0.208 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHH----------
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-----TLNA---------- 107 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-----~~~~---------- 107 (286)
++.+++++..++..++.++..+..+|......|+..+.+|..++.+|..++.+|+..+..+ ....
T Consensus 66 ~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g~~~~l~vL 145 (428)
T PRK11637 66 QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQLI 145 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 3455555666666666666666666666666777777777777777777777777666554 0000
Q ss_pred ---------H------HHHHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 108 ---------A------EQVDKAH-ARADELEK-------QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (286)
Q Consensus 108 ---------~------eqi~ka~-~Ri~eLek-------~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Le 164 (286)
. ..+..+. .-+..+.. ....+..++........+++..+.+++....+.+..+..|.
T Consensus 146 l~a~~~~~~~r~~~~l~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~ 225 (428)
T PRK11637 146 LSGEESQRGERILAYFGYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLE 225 (428)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000 11222333 34444444455555556777777777777777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 165 KINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (286)
Q Consensus 165 k~~~Eqk~~i~~lE~~lq~~Eeei~kle~E 194 (286)
....++...+.++++..+.+...|.++++.
T Consensus 226 ~~~~~~~~~l~~l~~~~~~L~~~I~~l~~~ 255 (428)
T PRK11637 226 SSLQKDQQQLSELRANESRLRDSIARAERE 255 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888876543
No 5
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.24 E-value=0.0013 Score=61.25 Aligned_cols=181 Identities=20% Similarity=0.205 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023185 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (286)
Q Consensus 47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie 126 (286)
+...++++.++++....+..+|..++..|....+.+.+...+|+.++.+|..++ ..|+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~----------------------~eI~ 90 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ----------------------KEIA 90 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHH
Confidence 666777777777777777777777777777766666666666666666666665 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 127 NLKKESEKQQKEKEALEARAIEA----------------------EKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (286)
Q Consensus 127 ~Lk~eie~~~~kk~eLEa~~~e~----------------------e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~ 184 (286)
.++..|..+ .+.|..|++.+ ..++..++..++...++...++.+-..++.....+
T Consensus 91 ~~~~~I~~r---~~~l~~raRAmq~nG~~t~Yidvil~SkSfsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l 167 (265)
T COG3883 91 ELKENIVER---QELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAAL 167 (265)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHcCChhHHHHHHHccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 34444555444 56788888888888888888888888888888888
Q ss_pred HHHHHHHHHHhhhhhHHH-----hhhhccCCchhHHHHHHHHHHHHhhhhhhhCcchhHHHHHHHHHhHHhhhhhchhhH
Q 023185 185 EEEMMRAKFEATSRSKEL-----TEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHV 259 (286)
Q Consensus 185 Eeei~kle~Ea~~~a~ql-----~~~~g~~l~Pwla~~~~~~~~~~~~~w~~hg~p~~~~~~~~~~~~~~~~~~~~~ph~ 259 (286)
+..+..+..-......++ ......-+.--++...+.....+.... -++|.-.+ +.-|+.|--
T Consensus 168 ~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~-----------~qka~a~a--~a~~~a~~~ 234 (265)
T COG3883 168 EDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE-----------EQKALAEA--AAAEAAKQE 234 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHH--HHHHHHHhh
Confidence 888777655555443333 122233444445555555555554444 44444332 345677777
Q ss_pred Hhhhhh
Q 023185 260 ETIKAV 265 (286)
Q Consensus 260 ~~~~~~ 265 (286)
.+.++.
T Consensus 235 ~~~~a~ 240 (265)
T COG3883 235 AAAKAA 240 (265)
T ss_pred hhhhhh
Confidence 666655
No 6
>PRK09039 hypothetical protein; Validated
Probab=98.15 E-value=0.0016 Score=62.69 Aligned_cols=162 Identities=23% Similarity=0.287 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHHhhhhhcccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 023185 3 ASKLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (286)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i 82 (286)
.+-||++++|++++|+-+.. -+..++...+.++..|+++|.++..-+.--......++..+
T Consensus 23 ~~~ll~~~~f~l~~f~~~q~-------------------fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l 83 (343)
T PRK09039 23 LSTLLLVIMFLLTVFVVAQF-------------------FLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSV 83 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45667667776666654221 12334444455555555555554444433334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 83 QDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162 (286)
Q Consensus 83 ~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~ 162 (286)
..+..++..++..-..++.... ........++.++..+...+...+....+.+.....|......+...+..++..++.
T Consensus 84 ~~l~~~l~~a~~~r~~Le~~~~-~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 84 ANLRASLSAAEAERSRLQALLA-ELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444332110 000101112234444444333333333333333333333333333334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023185 163 LQKINDEQKSKIRKTERALKVA 184 (286)
Q Consensus 163 Lek~~~Eqk~~i~~lE~~lq~~ 184 (286)
.+....+++.+|+.+...+..+
T Consensus 163 ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 163 SEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555544444
No 7
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=98.07 E-value=0.0018 Score=54.98 Aligned_cols=60 Identities=25% Similarity=0.387 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkk 102 (286)
++.+.+.+..+...++.++..+.++...++..|..++..+..++.++..++..+..++..
T Consensus 5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666666666666666666666666666666555433
No 8
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.96 E-value=0.0045 Score=52.57 Aligned_cols=133 Identities=23% Similarity=0.304 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023185 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (286)
Q Consensus 47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie 126 (286)
|+.++..........+....+++.++....+++.+|..++..+..|+.+|+.++..+ ..++..+.+..+
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l--------~~~k~~lee~~~--- 70 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL--------KEAKEKLEESEK--- 70 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHHH---
Confidence 455566666666666666666666666666666666666666666666666665333 111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 127 ~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
.....+.+..+...||......+..+.+...++........+..++...++......+..+..+
T Consensus 71 -~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 71 -RKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred -HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1111223333344444444444444445555554444444444555555554444444444443
No 9
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.95 E-value=0.0074 Score=64.97 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhhhhhCcchhHHHHHHHHHhHHh
Q 023185 216 VHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQ 250 (286)
Q Consensus 216 ~~~~~~~~~~~~~w~~hg~p~~~~~~~~~~~~~~~ 250 (286)
.+...+....++..+..| |=|-.+++--.....+
T Consensus 457 ~~l~~lk~~k~dkvs~FG-~~m~~lL~~I~r~~~~ 490 (1074)
T KOG0250|consen 457 EELKDLKKTKTDKVSAFG-PNMPQLLRAIERRKRR 490 (1074)
T ss_pred HHHHHHHhcccchhhhcc-hhhHHHHHHHHHHHhc
Confidence 344556666777788888 7777777766655544
No 10
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.91 E-value=0.0028 Score=57.81 Aligned_cols=148 Identities=22% Similarity=0.354 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023185 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQID 126 (286)
Q Consensus 47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie 126 (286)
+..++..+...+.........++.......+++..+..+...|..++.+++.++..+ ......+..+.++..+.++-..
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL-~~~~~kL~~~e~~~de~er~~k 81 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERL-EEATEKLEEAEKRADESERARK 81 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-CHHHHHHHHHHHHHHHHCHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555666666666666666666666666666555444 3334445555555555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195 (286)
Q Consensus 127 ~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea 195 (286)
.|.........+...|+.....+.....+...++.............+...+.....++..+..++.+.
T Consensus 82 ~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 82 VLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL 150 (237)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence 444444444444444444444444444444444433333333333333333333333333333333333
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.89 E-value=0.0057 Score=66.16 Aligned_cols=44 Identities=34% Similarity=0.450 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE 87 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~ 87 (286)
..++..++.++..++..+.....++..+...+...+..+.....
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~ 336 (1164)
T TIGR02169 293 KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLA 336 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443333333333333333333
No 12
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.88 E-value=0.014 Score=53.71 Aligned_cols=18 Identities=17% Similarity=0.032 Sum_probs=11.2
Q ss_pred ccCCchhHHHHHHHHHHH
Q 023185 207 SAWLPPWLAVHLLQCQSL 224 (286)
Q Consensus 207 g~~l~Pwla~~~~~~~~~ 224 (286)
-.-+||-|...|.+....
T Consensus 169 ~~~l~~ell~~yeri~~~ 186 (239)
T COG1579 169 KEKLDPELLSEYERIRKN 186 (239)
T ss_pred HHhcCHHHHHHHHHHHhc
Confidence 345677777777765543
No 13
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.79 E-value=0.011 Score=63.75 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD 84 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e 84 (286)
..++..++..+..++..+.....++......+..+...+..
T Consensus 676 ~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~ 716 (1179)
T TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ 716 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333333333
No 14
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.72 E-value=0.026 Score=51.47 Aligned_cols=41 Identities=22% Similarity=0.405 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~ 85 (286)
.++..++.++..++...+.....+......+..+++...+.
T Consensus 36 ~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~ 76 (237)
T PF00261_consen 36 AEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADES 76 (237)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443333333
No 15
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.72 E-value=0.016 Score=62.60 Aligned_cols=145 Identities=19% Similarity=0.336 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhh------hHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS-------SLQKKE------TLNAAEQ 110 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~-------~~qkkl------~~~~~eq 110 (286)
..+++.+...+...+..++.+.+.+......+....+.+.+++++|..+-.+.+ ...+.+ -.+.+.+
T Consensus 280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~ 359 (1074)
T KOG0250|consen 280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEE 359 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555444444444444444444444444444444444444444444433333 332222 1222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 111 VDKAHARADELEKQIDNLKKESEKQQKEK-EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (286)
Q Consensus 111 i~ka~~Ri~eLek~Ie~Lk~eie~~~~kk-~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei 188 (286)
+..++.+++.+++.++.+.+++...+... ..+..++.+++.+.+.++..++.++.........++.+..+...-+++.
T Consensus 360 ~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~ 438 (1074)
T KOG0250|consen 360 IREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEK 438 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444444445555555555555554444 4455555555555555555555555555555544444444444444443
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=97.32 E-value=0.083 Score=56.32 Aligned_cols=26 Identities=19% Similarity=0.525 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhh
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELK 69 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~ 69 (286)
...++.+...+..++..++++..++.
T Consensus 474 ~~~~~~~~~~~~~le~~l~~~~~~~e 499 (880)
T PRK02224 474 RERVEELEAELEDLEEEVEEVEERLE 499 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 17
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.31 E-value=0.12 Score=51.92 Aligned_cols=31 Identities=10% Similarity=0.027 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 161 EKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 161 ~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
..++.........+..+......++.++.++
T Consensus 340 ~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l 370 (562)
T PHA02562 340 LELKNKISTNKQSLITLVDKAKKVKAAIEEL 370 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333444444433
No 18
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.31 E-value=0.24 Score=54.14 Aligned_cols=158 Identities=21% Similarity=0.259 Sum_probs=112.9
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA 118 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri 118 (286)
-+..+.++-...+++-..++...+.+..-|..-|.....++.-|+.....|...+.-|+..+.+. ..++..+..|..|+
T Consensus 1543 ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t-~~aE~~~~~a~q~~ 1621 (1758)
T KOG0994|consen 1543 RAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEET-AAAEKLATSATQQL 1621 (1758)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34566777778888888888888888888888888888899999999999998888888887666 66778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023185 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS 197 (286)
Q Consensus 119 ~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~ 197 (286)
++|...++.|+.+..++-..-...+.-+..+...-..++...+.+++........+.+--.....+.+....+..++.+
T Consensus 1622 ~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~ 1700 (1758)
T KOG0994|consen 1622 GELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEK 1700 (1758)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 9999999999998887766665555555555544445555555555554444444444444444444444444444443
No 19
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.28 E-value=0.13 Score=50.76 Aligned_cols=154 Identities=15% Similarity=0.252 Sum_probs=85.8
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------h-----
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE---------T----- 104 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl---------~----- 104 (286)
+-..+++.+...+.+...|++++.+...++..++..|.+.+..+..++..|..+...|..++..- -
T Consensus 46 ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~ 125 (420)
T COG4942 46 EIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQ 125 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666666666666666666666666666666666666666666666665554322 0
Q ss_pred ----------HHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q 023185 105 ----------LNAAEQVD--------------KAHARADELEKQIDNLKKESEKQQKEKEAL-------EARAIEAEKKI 153 (286)
Q Consensus 105 ----------~~~~eqi~--------------ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eL-------Ea~~~e~e~k~ 153 (286)
+.-.++.. .-..+++.|......|......+..+..+| -++...+...+
T Consensus 126 r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~ 205 (420)
T COG4942 126 RSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLL 205 (420)
T ss_pred hccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 011356666664444444444443334333 34444455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 154 SDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (286)
Q Consensus 154 ~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle 192 (286)
.+-...+.+++......+..+.++..+-..+..+|.+++
T Consensus 206 ~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 206 EERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 666666667777777777777777776666666666665
No 20
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.27 E-value=0.07 Score=53.74 Aligned_cols=56 Identities=14% Similarity=0.266 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
+.+++.+..+...++.+++.+..+|..+...++.....+..+..++..+...+..+
T Consensus 219 ~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l~~~ 274 (562)
T PHA02562 219 QNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQF 274 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333332332333333333333333333333
No 21
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.25 E-value=0.12 Score=57.19 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 156 l~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
++..+...+....+....++.++..+..+...+..
T Consensus 875 l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 909 (1163)
T COG1196 875 LEDELKELEEEKEELEEELRELESELAELKEEIEK 909 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 22
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=97.24 E-value=0.31 Score=49.94 Aligned_cols=113 Identities=17% Similarity=0.213 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023185 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS 197 (286)
Q Consensus 118 i~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~ 197 (286)
++.+++++..+.+..................+.....++...++.+++...+....+..+......+...+.++......
T Consensus 350 ~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ 429 (569)
T PRK04778 350 VRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE 429 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444444455666777778888888888888888888888888888888888888777776
Q ss_pred hhHHHhhhhccCCchhHHHHHHHHHHHHhhhhh
Q 023185 198 RSKELTEVHSAWLPPWLAVHLLQCQSLIETHWN 230 (286)
Q Consensus 198 ~a~ql~~~~g~~l~Pwla~~~~~~~~~~~~~w~ 230 (286)
..+.+...+---+|..+-..+............
T Consensus 430 ikr~l~k~~lpgip~~y~~~~~~~~~~i~~l~~ 462 (569)
T PRK04778 430 IKRYLEKSNLPGLPEDYLEMFFEVSDEIEALAE 462 (569)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 666666655334666655555555444444443
No 23
>PRK03918 chromosome segregation protein; Provisional
Probab=97.21 E-value=0.16 Score=53.92 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 75 VAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 75 I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
+..+.+.+..++.++..+...+...
T Consensus 202 ~~~l~~ei~~l~~e~~~l~~~~~~~ 226 (880)
T PRK03918 202 LEEVLREINEISSELPELREELEKL 226 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444433333
No 24
>PRK03918 chromosome segregation protein; Provisional
Probab=97.19 E-value=0.12 Score=54.86 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 151 KKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (286)
Q Consensus 151 ~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~ 184 (286)
..+..++..+..+.......+..+..++..+..+
T Consensus 666 ~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 666 EEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444443333
No 25
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.15 E-value=0.35 Score=49.44 Aligned_cols=93 Identities=20% Similarity=0.313 Sum_probs=54.4
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-----HHHHHHHHHH
Q 023185 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-T-----LNAAEQVDKA 114 (286)
Q Consensus 41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-~-----~~~~eqi~ka 114 (286)
..++.+++.......+|......+.++...+...+..++..+.....+...|..+...+.... . -....+..++
T Consensus 139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~ 218 (546)
T PF07888_consen 139 QLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEA 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777666666666666666666666666666666666665555443322 0 1111333444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023185 115 HARADELEKQIDNLKKESE 133 (286)
Q Consensus 115 ~~Ri~eLek~Ie~Lk~eie 133 (286)
..||..|+..|..+.....
T Consensus 219 ~~ri~~LEedi~~l~qk~~ 237 (546)
T PF07888_consen 219 RQRIRELEEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667777766666655543
No 26
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.14 E-value=0.19 Score=46.24 Aligned_cols=52 Identities=27% Similarity=0.387 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI 96 (286)
..+..++..+..+......+..++..++.++.+.+..|.+.+..+..++..+
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444443
No 27
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.10 E-value=0.15 Score=52.80 Aligned_cols=58 Identities=28% Similarity=0.377 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
.-.+++++++.++.++...+..+..+++.+...+.+...++.+.......++.++...
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666666666666666666666666666666666555555555555433
No 28
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.08 E-value=0.29 Score=53.58 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~ 196 (286)
.+...+.++.--..+...|..+.....+++.++...+..+.....+.+..+..+...+.....++.+...+..
T Consensus 494 ~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~ 566 (1293)
T KOG0996|consen 494 QVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELP 566 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHH
Confidence 3333344444444444455555555555666666666666666666666666666555555555555443333
No 29
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.02 E-value=0.21 Score=57.52 Aligned_cols=49 Identities=27% Similarity=0.380 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRK 176 (286)
Q Consensus 128 Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~ 176 (286)
++..++.........+.....+..++.+.+..+..+++.+.+....|+.
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~e 1108 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKE 1108 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333
No 30
>PRK01156 chromosome segregation protein; Provisional
Probab=96.96 E-value=0.39 Score=51.51 Aligned_cols=31 Identities=13% Similarity=0.271 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 152 KISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (286)
Q Consensus 152 k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq 182 (286)
.+..+...+..+.....+...++..+...+.
T Consensus 689 ~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~ 719 (895)
T PRK01156 689 ALDDAKANRARLESTIEILRTRINELSDRIN 719 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333333333333333333333333333
No 31
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.86 E-value=0.77 Score=51.61 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=13.2
Q ss_pred hhhhccCcCchHHHHHHHHHh
Q 023185 263 KAVSSFSYSSIPEILKYIEEL 283 (286)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~ 283 (286)
++-..||..-+.+|-+.|.+|
T Consensus 1129 ~~~~~~~~~~~~~~n~~~~~~ 1149 (1311)
T TIGR00606 1129 QAIMKFHSMKMEEINKIIRDL 1149 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666776666665
No 32
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.84 E-value=1.2 Score=50.03 Aligned_cols=17 Identities=0% Similarity=-0.068 Sum_probs=8.9
Q ss_pred hhhHHhhhhhhccCcCc
Q 023185 256 QPHVETIKAVSSFSYSS 272 (286)
Q Consensus 256 ~ph~~~~~~~~~~~~~~ 272 (286)
...+.+++..++-+...
T Consensus 997 ~~~i~~l~kel~~~~~~ 1013 (1311)
T TIGR00606 997 NEDMRLMRQDIDTQKIQ 1013 (1311)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555544443
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.84 E-value=0.71 Score=47.24 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 50 lk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
++.++...+....++.+....+.....+++..+..++.++.....+...+
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L 190 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQL 190 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444
No 34
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.80 E-value=0.39 Score=45.87 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=20.1
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 56 eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.|+...+.+..+...+...+..+...+..+....+.|..++..++
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk 197 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLK 197 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
No 35
>PRK09039 hypothetical protein; Validated
Probab=96.73 E-value=0.31 Score=47.03 Aligned_cols=50 Identities=22% Similarity=0.246 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQK 94 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~ 94 (286)
.+|++++.+|.+|-...+--......++..|.++...+...+.....|++
T Consensus 53 ~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 53 SALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333333333333333333333333333333333
No 36
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.58 E-value=1.6 Score=49.77 Aligned_cols=43 Identities=7% Similarity=0.190 Sum_probs=23.0
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 59 s~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
.++.+....|...+..+......+.++..++..|+.++.....
T Consensus 293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k 335 (1486)
T PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD 335 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555555555555555543
No 37
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.49 E-value=0.53 Score=49.62 Aligned_cols=96 Identities=15% Similarity=0.237 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eL 121 (286)
-++.++..++..+....+.=.++..+|..++..=..+..+|..++.+...|++++..+.... ..+...+...++|+++.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aR-q~DKq~l~~LEkrL~eE 500 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQAR-QQDKQSLQQLEKRLAEE 500 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 45667777777777776666666666666665555556666666666666666666664433 22333344445566665
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023185 122 EKQIDNLKKESEKQQKE 138 (286)
Q Consensus 122 ek~Ie~Lk~eie~~~~k 138 (286)
.+.=..+++++.+.+..
T Consensus 501 ~~~R~~lEkQL~eErk~ 517 (697)
T PF09726_consen 501 RRQRASLEKQLQEERKA 517 (697)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555444433
No 38
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.48 E-value=1.1 Score=47.34 Aligned_cols=106 Identities=24% Similarity=0.387 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----------
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQV---------- 111 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi---------- 111 (286)
.++.+|.+++.+-.+|++++..+++....=...|..+|+.+.+-...-..++.++..-++.- ..+++..
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r-~~ee~~aar~~~~~~~~ 535 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKAR-KEEEEKAARALAQAQAT 535 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHhhhhccccchhc
Confidence 45667777777778888887777777777777788888888888888888888877766433 1110100
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 112 -----DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIE 148 (286)
Q Consensus 112 -----~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e 148 (286)
.--..|.++|+.++..|+.++..-......+|....+
T Consensus 536 r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~ 577 (697)
T PF09726_consen 536 RQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQE 577 (697)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122577778888888888877777777777766543
No 39
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.88 Score=48.20 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
.++.++..|+.++.+|...+-++.-.+-...+.|+...+...-.-.+|..|+.+|.+.|.++
T Consensus 441 ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl 502 (1118)
T KOG1029|consen 441 QLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKL 502 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777777777777777777777777777788888888888887777
No 40
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.38 E-value=2.6 Score=48.12 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD 84 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e 84 (286)
.++.+..+...++...+..+..+...+.++...+..++.++..
T Consensus 290 g~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEk 332 (1486)
T PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQA 332 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555544444433
No 41
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.35 E-value=0.11 Score=45.95 Aligned_cols=100 Identities=23% Similarity=0.304 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eL 121 (286)
.+...+-.++..+.++.....+..++|..+...+..++..+......|..+..++..++.++ ..-...++++
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~--------~~l~~~l~ek 142 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKI--------KDLEEELKEK 142 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 34555556666666666666666666666666666666666666666666666666665222 1111344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 122 EKQIDNLKKESEKQQKEKEALEARAIEA 149 (286)
Q Consensus 122 ek~Ie~Lk~eie~~~~kk~eLEa~~~e~ 149 (286)
.+.++.++.++...+-....++.+...+
T Consensus 143 ~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 143 NKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555544444444444443
No 42
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.34 E-value=1 Score=49.55 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHH
Q 023185 178 ERALKVAEEEMMRAKFEATSRSKEL 202 (286)
Q Consensus 178 E~~lq~~Eeei~kle~Ea~~~a~ql 202 (286)
...+..+...+..+..+...+.+.+
T Consensus 541 ~~~l~~~k~~l~~~k~e~~~~~k~l 565 (1293)
T KOG0996|consen 541 KTELDDLKEELPSLKQELKEKEKEL 565 (1293)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhH
Confidence 3333444444444444444444444
No 43
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.33 E-value=2.1 Score=46.55 Aligned_cols=60 Identities=25% Similarity=0.450 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhh
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD----KSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e----~~~eI~~Lq~eI~~~qkkl 103 (286)
...+..+...+.+++++|.+...-++..+..|..+++.+.+ +...+..+..+|..+...+
T Consensus 740 ~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~ 803 (1174)
T KOG0933|consen 740 LDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRA 803 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHH
Confidence 34556666666667777766666666666666666655543 4455566666666655444
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.32 E-value=0.56 Score=43.88 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (286)
Q Consensus 156 l~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~ 189 (286)
++..+..+......+-..++.+-.-.-.++.+|.
T Consensus 267 le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIa 300 (312)
T PF00038_consen 267 LEEELAELREEMARQLREYQELLDVKLALDAEIA 300 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3333333333333333333333333333333333
No 45
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.32 E-value=1 Score=42.71 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=32.2
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (286)
Q Consensus 41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~ 97 (286)
+.++.+..++..++.++.++.+++++++..+...-++....+..+-..+..+-..++
T Consensus 44 deln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 44 DELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555566666666666666666555555555555555555555544444
No 46
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.30 E-value=0.98 Score=43.39 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023185 174 IRKTERALKVAEEEMMRA 191 (286)
Q Consensus 174 i~~lE~~lq~~Eeei~kl 191 (286)
+..+..++..++..+..+
T Consensus 248 l~~~~~~l~~~~~~l~~~ 265 (423)
T TIGR01843 248 LTEAQARLAELRERLNKA 265 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 47
>PRK11281 hypothetical protein; Provisional
Probab=96.22 E-value=0.8 Score=50.72 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023185 155 DLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (286)
Q Consensus 155 el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql 202 (286)
+.+..+.+.+....+.+.++..+......++..+.......+.+..++
T Consensus 132 q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L 179 (1113)
T PRK11281 132 QTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL 179 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444444443333
No 48
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.13 E-value=1.9 Score=43.95 Aligned_cols=42 Identities=29% Similarity=0.212 Sum_probs=18.8
Q ss_pred HHHHHHHHHhHHhhhhhch---hhHHhhhhhhccCcCchHHHHHH
Q 023185 238 DVAIQKALEKKAQAGKWVQ---PHVETIKAVSSFSYSSIPEILKY 279 (286)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~---ph~~~~~~~~~~~~~~~~~~~~~ 279 (286)
..|..+|.+.-..|.+++- -+|+.+|..=+.+-+-+-+..+-
T Consensus 466 ~~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l~kle~~~~e 510 (522)
T PF05701_consen 466 ESLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEILEKLEEAMKE 510 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555445554432 34555554444333333333333
No 49
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.12 E-value=2.7 Score=45.76 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=9.0
Q ss_pred HHHHHHhHHhhhhhch
Q 023185 241 IQKALEKKAQAGKWVQ 256 (286)
Q Consensus 241 ~~~~~~~~~~~~~~~~ 256 (286)
..+..++...=+.|.-
T Consensus 925 ~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 925 ARKEVEKLLKKHEWIG 940 (1174)
T ss_pred HHHHHHHHHHhccchh
Confidence 3445555555566765
No 50
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=96.06 E-value=2 Score=44.37 Aligned_cols=120 Identities=20% Similarity=0.296 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh----hH-H------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 023185 78 KEKAIQDKSERIVSLQKELSSLQKKE----TL-N------------AAEQVDKAHARADELEKQIDNLKKESEKQQKEK- 139 (286)
Q Consensus 78 ~e~~i~e~~~eI~~Lq~eI~~~qkkl----~~-~------------~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk- 139 (286)
.+..+...+..|..++..|..+++++ +. + .=.++..|+.||..+++.++.|..+....+...
T Consensus 194 ~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~ 273 (629)
T KOG0963|consen 194 LQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKK 273 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 34445555555555555555555554 11 0 125677899999999999999999988877665
Q ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023185 140 -----------EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS 197 (286)
Q Consensus 140 -----------~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~ 197 (286)
..|-.+=+.+.....+++.....+.........+|..+++.+...-..+.++....+.
T Consensus 274 ~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 274 LAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred hccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222222233334445555566666777777888888888888777777776665553
No 51
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.03 E-value=0.21 Score=44.11 Aligned_cols=104 Identities=16% Similarity=0.274 Sum_probs=37.6
Q ss_pred CchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023185 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARAD 119 (286)
Q Consensus 40 ~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~ 119 (286)
...++.++.++.....++...+...+.++..++..+......|..+...+..|+.+|..+...+ ..-++-+.
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l--------~ek~k~~e 147 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEEL--------KEKNKANE 147 (194)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
T ss_pred cccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Confidence 4445666666666666666666666677777777777777777777777777776666665333 22223444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEK 151 (286)
Q Consensus 120 eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~ 151 (286)
.+.+++..|.-+......+...|+....++..
T Consensus 148 ~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 148 ILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544
No 52
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.03 E-value=2.2 Score=47.71 Aligned_cols=62 Identities=18% Similarity=0.356 Sum_probs=36.1
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+...++.+++.+...+..+....++..+.+......++.....+......+...+..+..++
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 662 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLK 662 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44466777777777666666666666666555555555555555555555555544444444
No 53
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=96.00 E-value=0.66 Score=37.64 Aligned_cols=47 Identities=32% Similarity=0.471 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162 (286)
Q Consensus 116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~ 162 (286)
.|+.+|+..|.++...++..+.-+-+|+.+....++-.+.++-++..
T Consensus 58 qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka~lel~l~e 104 (107)
T PF09304_consen 58 QRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKAILELKLAE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 58888888888888888886666667777777777777666665544
No 54
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.96 E-value=2.9 Score=44.69 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=10.2
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHH
Q 023185 57 LESHIDEKTQELKGKDEVVAQKEKAIQ 83 (286)
Q Consensus 57 Les~i~e~~~eL~~~d~~I~q~e~~i~ 83 (286)
+++.++...-+|..++.+|-.+++.+.
T Consensus 285 mK~k~d~~~~eL~rk~~E~~~~qt~l~ 311 (775)
T PF10174_consen 285 MKSKMDRLKLELSRKKSELEALQTRLE 311 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444433333333333
No 55
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.89 E-value=0.94 Score=38.51 Aligned_cols=57 Identities=25% Similarity=0.295 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
..++...+.+.+.|+..+..+..+|.........+..........|..|+.+|..+.
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt 65 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELT 65 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555555543
No 56
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.89 E-value=0.97 Score=39.35 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEKQIDNLKKESEKQ 135 (286)
Q Consensus 116 ~Ri~eLek~Ie~Lk~eie~~ 135 (286)
.|+..+...+..+..+....
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 57
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.87 E-value=1.8 Score=41.46 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhhhhhhhC
Q 023185 215 AVHLLQCQSLIETHWNAHG 233 (286)
Q Consensus 215 a~~~~~~~~~~~~~w~~hg 233 (286)
..+...+.......-..||
T Consensus 270 ~~Ei~~Lk~~~~~Le~l~g 288 (312)
T smart00787 270 FKEIEKLKEQLKLLQSLTG 288 (312)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3333344433333333443
No 58
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.84 E-value=1.6 Score=40.80 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=43.0
Q ss_pred CchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 40 ~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
...+..++.+++..|..+......+.-++..+...++.....+.........++.+|..+.+.+
T Consensus 49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~l 112 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDL 112 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4456777777777777777777777777777777777766666666666666666666665444
No 59
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.82 E-value=0.99 Score=43.14 Aligned_cols=44 Identities=16% Similarity=0.190 Sum_probs=19.3
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 56 eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
.|....+.+..+...+...+..+...+-.+....+.|..++..+
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L 191 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQL 191 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444
No 60
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.80 E-value=2.2 Score=42.05 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 119 DELEKQIDNLKKESEKQQKEKEALEARAIEAEK 151 (286)
Q Consensus 119 ~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~ 151 (286)
..|+.++-+|+..-+.+...-..|..+++.++.
T Consensus 182 ~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~ 214 (499)
T COG4372 182 TQLKSQVLDLKLRSAQIEQEAQNLATRANAAQA 214 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555445444444433
No 61
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.67 E-value=2 Score=40.71 Aligned_cols=67 Identities=22% Similarity=0.233 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhh
Q 023185 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVH 206 (286)
Q Consensus 140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql~~~~ 206 (286)
.+|-+....+.....++...+..+-...+++-..+-++-.....+-.+.+.+-.+.-....++...|
T Consensus 161 ~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ 227 (294)
T COG1340 161 KELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELH 227 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3344444444444444555555554444444444444444444444444444444444444443333
No 62
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.65 E-value=3.3 Score=43.03 Aligned_cols=142 Identities=13% Similarity=0.218 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAA--EQVDKAHARADEL 121 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~--eqi~ka~~Ri~eL 121 (286)
..+..+-...+.+|+.+++++..++..+..++..+...+..+..++.....+...++....+..+ .-+..+...+..|
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL 399 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKL 399 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44456677788888888888888888777777777777777777777777777777655422211 1122233344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (286)
Q Consensus 122 ek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei 188 (286)
+..|+.-...+..+ ...++..+.-+...+..+......-......+...+..+....+.+..++
T Consensus 400 ~~~v~~s~~rl~~L---~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~ 463 (594)
T PF05667_consen 400 QALVEASEQRLVEL---AQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEI 463 (594)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443 24445555555555555444443333333333333334443333333333
No 63
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.64 E-value=2.2 Score=40.79 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 71 KDEVVAQKEKAIQDKSERIVSLQKELSS 98 (286)
Q Consensus 71 ~d~~I~q~e~~i~e~~~eI~~Lq~eI~~ 98 (286)
+++-.+.++..+..+......|...+..
T Consensus 147 l~gl~~~L~~~~~~L~~D~~~L~~~~~~ 174 (325)
T PF08317_consen 147 LEGLKEGLEENLELLQEDYAKLDKQLEQ 174 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444333333
No 64
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.61 E-value=1.7 Score=47.20 Aligned_cols=168 Identities=18% Similarity=0.223 Sum_probs=83.3
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHH
Q 023185 36 DAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKA 114 (286)
Q Consensus 36 ~~~~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-~~~~~eqi~ka 114 (286)
......++.-++-+++.+|.-|+.++++....+..+..+|+.++.++..+..++.....+-.+...-. ++++-.+-..
T Consensus 168 ~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~ae- 246 (1195)
T KOG4643|consen 168 VVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAE- 246 (1195)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhh-
Confidence 33456677777777777777777777776666666666666555555555555544444433332111 1110000000
Q ss_pred HHHHHH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 115 HARADE--LEK--QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL--EKLQKINDEQKSKIRKTERALKVAEEEM 188 (286)
Q Consensus 115 ~~Ri~e--Lek--~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~--~~Lek~~~Eqk~~i~~lE~~lq~~Eeei 188 (286)
|..- -++ .++-++...+..+.....|.+...=++..+.-+...- ..++..+-..+.+++.+.-....-..++
T Consensus 247 --r~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kt 324 (1195)
T KOG4643|consen 247 --RPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKT 324 (1195)
T ss_pred --cCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 0000 011 2333555555555444444444444444444444333 4555666666666666666666666666
Q ss_pred HHHHHHhhhhhHHHhhhh
Q 023185 189 MRAKFEATSRSKELTEVH 206 (286)
Q Consensus 189 ~kle~Ea~~~a~ql~~~~ 206 (286)
.++..|..++..+-...+
T Consensus 325 eeL~eEnstLq~q~eqL~ 342 (1195)
T KOG4643|consen 325 EELHEENSTLQVQKEQLD 342 (1195)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 665555554433333333
No 65
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.56 E-value=3.1 Score=42.70 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 77 QKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 77 q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
.+...+.....+...|..+|+.++.
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~ 338 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQ 338 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555554443
No 66
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.55 E-value=1.2 Score=47.24 Aligned_cols=59 Identities=7% Similarity=0.120 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkk 102 (286)
+.+++--+.++.++..++..-...+-.+.....+++.++..+..++..|...|-++...
T Consensus 408 qRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~ 466 (1118)
T KOG1029|consen 408 QRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVD 466 (1118)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheec
Confidence 34444455666677666666666666667777777777777777777777666655433
No 67
>PRK01156 chromosome segregation protein; Provisional
Probab=95.53 E-value=3.6 Score=44.25 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 023185 42 PLKIELDQLKSKIRSLES 59 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes 59 (286)
.+..-.+.++..+..++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~ 180 (895)
T PRK01156 163 SLERNYDKLKDVIDMLRA 180 (895)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444444
No 68
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.51 E-value=1.1 Score=46.71 Aligned_cols=115 Identities=21% Similarity=0.356 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHH
Q 023185 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE---TLNAAEQVDKAHARADELEKQID 126 (286)
Q Consensus 50 lk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl---~~~~~eqi~ka~~Ri~eLek~Ie 126 (286)
++.....++..+..++.++..+..+.......+.+++..|..|.+++......- .....+. ..+.++..|.+.++
T Consensus 20 lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~--~Lq~E~~~L~kElE 97 (617)
T PF15070_consen 20 LKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQ--QLQAEAEHLRKELE 97 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHH--HHHHHHHHHHHHHH
Confidence 344445555666666666666666666666666666666666665554332111 0111111 12245555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKI 166 (286)
Q Consensus 127 ~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~ 166 (286)
.|..++..+......|-....+.+.++.+++..+..++..
T Consensus 98 ~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~ 137 (617)
T PF15070_consen 98 SLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQ 137 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544444333333333344444444444333333
No 69
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.48 E-value=1.8 Score=38.77 Aligned_cols=101 Identities=26% Similarity=0.345 Sum_probs=59.1
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKET-L-NAAEQVDKAHARADELEKQIDNLKKE 131 (286)
Q Consensus 54 i~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~-~-~~~eqi~ka~~Ri~eLek~Ie~Lk~e 131 (286)
|..|..++.++.......+..+.+...+...+..-+..++.++..+++.+. + .....+..+..|+..+++.+..|+-+
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e 108 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWE 108 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555555555555555555555555555441 1 12233445567888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023185 132 SEKQQKEKEALEARAIEAEKKIS 154 (286)
Q Consensus 132 ie~~~~kk~eLEa~~~e~e~k~~ 154 (286)
-+....+-..++..+.++..+..
T Consensus 109 ~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 109 HEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777777777655443
No 70
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.45 E-value=2.9 Score=41.16 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
-++........+.+++-+....++...-.+-...+.+......++.+.+.++..+
T Consensus 88 tel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~ 142 (499)
T COG4372 88 TELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARL 142 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444444333
No 71
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.44 E-value=2.5 Score=48.77 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
++.+.+-.-.++.++...++.+..++--++..+.++...++....++..|+.+.+.-
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~w 1290 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRW 1290 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555555555555555555555555444
No 72
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=95.43 E-value=3.6 Score=41.96 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 149 AEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 149 ~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
+..........+..+.......+..+..++..+..+..++...
T Consensus 384 Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaa 426 (522)
T PF05701_consen 384 AKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAA 426 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444455555555555555555555543
No 73
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.13 E-value=3.3 Score=39.77 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=16.0
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDE 63 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e 63 (286)
+...+..++..++.++..++.....
T Consensus 75 d~~~~~~~l~~l~~~~~~l~a~~~~ 99 (423)
T TIGR01843 75 DATDVEADAAELESQVLRLEAEVAR 99 (423)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777766655544
No 74
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=95.12 E-value=5.4 Score=42.30 Aligned_cols=160 Identities=21% Similarity=0.297 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHH---HH----------
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE---TLN---AA---------- 108 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl---~~~---~~---------- 108 (286)
.++..+++++.+.+.++..+...+......++..+..+.+....|..|-..++.+..-- +.. ..
T Consensus 265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~ 344 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDG 344 (717)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhccccccccccc
Confidence 57788999999999999999999999999999999999999999999999998886510 000 00
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 109 ---------EQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA----EKKISDLSAKLEKLQKINDEQKSKIR 175 (286)
Q Consensus 109 ---------eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~----e~k~~el~~k~~~Lek~~~Eqk~~i~ 175 (286)
-++++ .+.+....++..++.++..++.+...++.+.... ...+..+..++..+++...+-+..+.
T Consensus 345 ~~ye~Di~~~eiLe--~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~ 422 (717)
T PF09730_consen 345 DYYEVDINGLEILE--CKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERIS 422 (717)
T ss_pred chhhhccccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 01222 4555555578888888888877777666655444 44567777778888886666666777
Q ss_pred HHHHHHHHHHHHHHH-------HHHHhhhhhHHH-hhhh
Q 023185 176 KTERALKVAEEEMMR-------AKFEATSRSKEL-TEVH 206 (286)
Q Consensus 176 ~lE~~lq~~Eeei~k-------le~Ea~~~a~ql-~~~~ 206 (286)
.++.++..+-..... ++-+....+..| +-||
T Consensus 423 ~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYH 461 (717)
T PF09730_consen 423 ELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYH 461 (717)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776665554444 444444555555 3355
No 75
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.93 E-value=3.6 Score=39.29 Aligned_cols=64 Identities=20% Similarity=0.278 Sum_probs=35.2
Q ss_pred CchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK----EKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 40 ~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~----e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
...-..+++.++.|+..|+.+-..+-.+...+..+.... +..+.+--.++.....+|..+..++
T Consensus 155 ~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseEL 222 (306)
T PF04849_consen 155 SSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEEL 222 (306)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHH
Confidence 344456677777777777766655555555555333322 3334444555555555555555433
No 76
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.72 E-value=9.1 Score=42.89 Aligned_cols=61 Identities=13% Similarity=0.285 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
+...+........+++..+...+..+......+..++..+.....++..+.++-..++.+.
T Consensus 612 ~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 672 (1201)
T PF12128_consen 612 AEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEI 672 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555555555555555555555544444433
No 77
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.70 E-value=4 Score=42.50 Aligned_cols=42 Identities=29% Similarity=0.354 Sum_probs=18.2
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 023185 59 SHIDEKTQELKGKDEVVAQKEKAIQDK--SERIVSLQKELSSLQ 100 (286)
Q Consensus 59 s~i~e~~~eL~~~d~~I~q~e~~i~e~--~~eI~~Lq~eI~~~q 100 (286)
+.+.....++..+..+|+.+...|... ...|..+..++..++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~ 434 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQ 434 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 344444444444444444444444332 234444444444443
No 78
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.66 E-value=3.1 Score=37.17 Aligned_cols=138 Identities=19% Similarity=0.315 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEV-------VAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHA 116 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~-------I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~ 116 (286)
.-++.+++..+.++...++++..+-+.+..- |+..+..=+++..-|+.-.++|..++..+ -+++.
T Consensus 11 ~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~L--------R~~q~ 82 (194)
T PF15619_consen 11 LHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERL--------RKSQE 82 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH--------HHHHH
Confidence 3466777777777777777777666555433 44444444666666777777777776333 33334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQQKEKEALEARAI--EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~--e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
+.+++++.+.+...++...+.....|..... .+. ...++..++..++....+....+..+++.+........+
T Consensus 83 ~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~-eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~r 157 (194)
T PF15619_consen 83 QERELERKLKDKDEELLKTKDELKHLKKLSEDKNLA-EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRR 157 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4444444444444444443333322222111 011 124555566666666666666666666655444444433
No 79
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.63 E-value=1.2 Score=42.50 Aligned_cols=65 Identities=22% Similarity=0.205 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 127 ~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
.++.+.+.+..+...++.....+.......-.....++-...+.....+.+..........++++
T Consensus 68 ~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 68 ELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333344444444444444444555545555555544
No 80
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.52 E-value=2.3 Score=35.18 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 72 DEVVAQKEKAIQDKSERIVSLQKELSS 98 (286)
Q Consensus 72 d~~I~q~e~~i~e~~~eI~~Lq~eI~~ 98 (286)
+.++..++.++..+..+-+.+..+|-.
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~ 55 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVK 55 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444433
No 81
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.45 E-value=3.5 Score=36.88 Aligned_cols=48 Identities=19% Similarity=0.258 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (286)
Q Consensus 141 eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei 188 (286)
..+.-....+..+.+.+.....+...+.++..-...+...+..+++.+
T Consensus 141 ~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 141 EFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444445555555555555555555555554444444443
No 82
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.44 E-value=7.4 Score=40.66 Aligned_cols=97 Identities=19% Similarity=0.351 Sum_probs=59.0
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhhh
Q 023185 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQ----------------DKSERIVSLQKELSSLQKKET 104 (286)
Q Consensus 41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~----------------e~~~eI~~Lq~eI~~~qkkl~ 104 (286)
..+++.+.++..++..|...++.....+.+++..|.++...+. .++.++..|..+++.+..++.
T Consensus 25 a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlq 104 (617)
T PF15070_consen 25 AQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQ 104 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777888888888888888888888888888877776554 345555666666666654440
Q ss_pred H--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 105 L--NAAE----QVDKAHARADELEKQIDNLKKESEKQQK 137 (286)
Q Consensus 105 ~--~~~e----qi~ka~~Ri~eLek~Ie~Lk~eie~~~~ 137 (286)
- ...+ ....-..|+.+|++.+..+.....+...
T Consensus 105 aqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~k 143 (617)
T PF15070_consen 105 AQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQK 143 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0001 1112235666677666666655554433
No 83
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=94.44 E-value=0.67 Score=35.05 Aligned_cols=68 Identities=38% Similarity=0.470 Sum_probs=41.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 64 KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALE 143 (286)
Q Consensus 64 ~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLE 143 (286)
+...|.++|..|.++..+-..++.+...+.+-|..+. +.+.++++.+..++..++....+...|+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr---------------~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLR---------------AKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777777777777777666666665554 3444555555555555555555555555
Q ss_pred HHH
Q 023185 144 ARA 146 (286)
Q Consensus 144 a~~ 146 (286)
.++
T Consensus 68 ~~l 70 (74)
T PF12329_consen 68 ERL 70 (74)
T ss_pred HHh
Confidence 443
No 84
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=94.40 E-value=7 Score=40.18 Aligned_cols=139 Identities=21% Similarity=0.286 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023185 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (286)
Q Consensus 121 Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ 200 (286)
+.++|..+.+....+......-..-...+...+.+....+..+++...+....++.+..+...+...+.++.......-+
T Consensus 349 l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR 428 (560)
T PF06160_consen 349 LEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKR 428 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555544444444445556677778888888888888888888889999989999999888888887777
Q ss_pred HHhhhhccCCchhHHHHHHHHHHHHhhhhhhhC-cch-hHHHHHHHHHhHHhhhhhchhhHHhhhhhhc
Q 023185 201 ELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHG-KPA-MDVAIQKALEKKAQAGKWVQPHVETIKAVSS 267 (286)
Q Consensus 201 ql~~~~g~~l~Pwla~~~~~~~~~~~~~w~~hg-~p~-~~~~~~~~~~~~~~~~~~~~ph~~~~~~~~~ 267 (286)
.+.+.+---+|.-.-..+..........-..-+ .|+ |+.+.+ -+.. +...|+++..++.
T Consensus 429 ~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~-~l~~-------a~~~v~~L~~~t~ 489 (560)
T PF06160_consen 429 RLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNK-QLEE-------AEDDVETLEEKTE 489 (560)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHH-HHHH-------HHHHHHHHHHHHH
Confidence 776666323444333333333333333333333 333 222222 2222 4556777666653
No 85
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.25 E-value=5.5 Score=43.73 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023185 169 EQKSKIRKTERALKVAEEEMMRAKFEATS 197 (286)
Q Consensus 169 Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~ 197 (286)
.....+..+.+.+..++..+.+...+-..
T Consensus 867 ~~~~~~tkl~~~i~~~es~ie~~~~er~~ 895 (1141)
T KOG0018|consen 867 RLVKELTKLDKEITSIESKIERKESERHN 895 (1141)
T ss_pred HHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 33344444444555555555554444433
No 86
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.24 E-value=3.9 Score=36.58 Aligned_cols=125 Identities=26% Similarity=0.294 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLK 129 (286)
Q Consensus 50 lk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk 129 (286)
+-..|..|+..-..+..+-..+...|...+.--..+..+|..|...+.++|.-+ ...+.++..+++|+
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal------------~~aK~l~eEledLk 73 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQAL------------QKAKALEEELEDLK 73 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 334444444444444444455555555555555556666666666666665332 23444555566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 130 KESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (286)
Q Consensus 130 ~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Ee 186 (286)
.....++.....|-+..+.+++...-+...+..++..........+.+.++...+..
T Consensus 74 ~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 74 TLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 666666666666666666666666666666666666655555555555555444433
No 87
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.19 E-value=8.8 Score=40.52 Aligned_cols=21 Identities=5% Similarity=0.014 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023185 171 KSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 171 k~~i~~lE~~lq~~Eeei~kl 191 (286)
...+..++++.+..+..+..+
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~l 395 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESY 395 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666655555555553
No 88
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.11 E-value=8 Score=39.77 Aligned_cols=79 Identities=27% Similarity=0.321 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (286)
Q Consensus 116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~E 194 (286)
+....++..|..|+.+++..+.+....+..+......+..+...+..++....--+..+..++.++..+..+..++..+
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~ 184 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREE 184 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 3333444455555555555555444444444444444444444444444444444444444444444444444443333
No 89
>PRK11281 hypothetical protein; Provisional
Probab=94.08 E-value=6.4 Score=43.83 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 160 LEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 160 ~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
.+=.+...+.....++.++..++.+++.+..
T Consensus 222 ~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 222 QDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444455555555555555555554
No 90
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.00 E-value=11 Score=40.81 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=23.6
Q ss_pred hhhhhhCcc-hhHHHHHHHHHhHHhhhh-hchhhHH
Q 023185 227 THWNAHGKP-AMDVAIQKALEKKAQAGK-WVQPHVE 260 (286)
Q Consensus 227 ~~w~~hg~p-~~~~~~~~~~~~~~~~~~-~~~ph~~ 260 (286)
-||+--|-| .+-+....+|....+... |..|-+.
T Consensus 612 ~~~~~~~~p~~Llst~~~~s~n~~~~e~~~~~yla~ 647 (980)
T KOG0980|consen 612 LHWRCLTSPDFLLSTAENASVNATQFETSFNNYLAD 647 (980)
T ss_pred cccCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 345444444 667788889999888887 7776544
No 91
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.91 E-value=9.8 Score=41.63 Aligned_cols=60 Identities=28% Similarity=0.431 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
+=.+|-+++..-.+|+...+.-...|..+...++.+.+..+..... ....+.|+.+.++.
T Consensus 179 ~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer-~~~~~~Ie~l~~k~ 238 (1072)
T KOG0979|consen 179 YHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRER-ERKKSKIELLEKKK 238 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Confidence 4456677777777777777666666666666666666666554433 33456666664443
No 92
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.79 E-value=8 Score=38.59 Aligned_cols=59 Identities=8% Similarity=0.173 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQEL--------KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL--------~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
++.++.+++.++.+.+..+.....+- ......|...+..+...+.++..++..++.++.
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666655543211 123344555555555555555555555555544
No 93
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.74 E-value=11 Score=40.28 Aligned_cols=163 Identities=20% Similarity=0.265 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek 123 (286)
......+..++..+++.+..+.-.+......+......+.+.+..|..|+.++...++.
T Consensus 588 ~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS--------------------- 646 (769)
T PF05911_consen 588 TSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKES--------------------- 646 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 34444555555555555555544444444555555555555555555555555444321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-
Q 023185 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL- 202 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql- 202 (286)
=..+..++.........++.+...++.....+..++..|+.....-+..-..+...-..++.++.+...+.......-
T Consensus 647 -~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~ 725 (769)
T PF05911_consen 647 -NSLAETQLKAMKESYESLETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANE 725 (769)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhcccc
Confidence 122223333444444555666666666666666666666666666555555555555566666666543322110000
Q ss_pred -hhhhccCCchhHHHHHHHHHHHHhhh
Q 023185 203 -TEVHSAWLPPWLAVHLLQCQSLIETH 228 (286)
Q Consensus 203 -~~~~g~~l~Pwla~~~~~~~~~~~~~ 228 (286)
.+....|=.--.|...+-||++..++
T Consensus 726 ~~k~kqe~EiaaAA~KLAECQeTI~sL 752 (769)
T PF05911_consen 726 DKKIKQEKEIAAAAEKLAECQETIASL 752 (769)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 00111122223556677777776654
No 94
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.73 E-value=8.1 Score=38.52 Aligned_cols=20 Identities=10% Similarity=0.293 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023185 171 KSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 171 k~~i~~lE~~lq~~Eeei~k 190 (286)
...+..++++.+..+..+..
T Consensus 354 ~~el~~L~Re~~~~~~~Y~~ 373 (498)
T TIGR03007 354 EAELTQLNRDYEVNKSNYEQ 373 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555444444
No 95
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=93.73 E-value=7.1 Score=41.21 Aligned_cols=44 Identities=9% Similarity=0.065 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 148 EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 148 e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
.+...++.++.....+-....++.....+.+...+..+.-+.++
T Consensus 356 ~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~ 399 (754)
T TIGR01005 356 QLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNY 399 (754)
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444445544445554444444444443
No 96
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=93.72 E-value=8.1 Score=41.40 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=31.5
Q ss_pred CchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQK 94 (286)
Q Consensus 40 ~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~ 94 (286)
...+..+++.++.....++.......+++......+.+.+..|.+++.++..+..
T Consensus 591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ke 645 (769)
T PF05911_consen 591 KKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKE 645 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666655555555555555555555555555555554443
No 97
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.66 E-value=13 Score=40.69 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 124 QIDNLKKESEKQQKEKEALEARAIEA-------EKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~-------e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~ 196 (286)
.++.++.++.+...+..+|+...++. .....++...++.+.....+.|..-.++...+..++..+.+.+....
T Consensus 419 e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~ 498 (1200)
T KOG0964|consen 419 EIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLR 498 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333332 33444455666666677777777777777766666666666554444
No 98
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.64 E-value=5 Score=38.34 Aligned_cols=135 Identities=20% Similarity=0.280 Sum_probs=67.9
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023185 36 DAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEV----VAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQV 111 (286)
Q Consensus 36 ~~~~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~----I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi 111 (286)
......+++.++..+...=..|.++...+..+-...+++ |..+-+.+.+...+|..|..+|..-... .
T Consensus 158 ~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee--------~ 229 (306)
T PF04849_consen 158 KCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEE--------N 229 (306)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHH--------H
Confidence 345667778888777777766766666665444443333 3334456666666666666666555311 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 112 DKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (286)
Q Consensus 112 ~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE 178 (286)
..-+..|..|-.+|.+++......-.+.++|.............+...+.++++...+--..+.+..
T Consensus 230 ~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 230 RRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112233334444444444444444444444444444444444444444444444444444443333
No 99
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=93.59 E-value=5.6 Score=36.16 Aligned_cols=130 Identities=18% Similarity=0.265 Sum_probs=72.0
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKAHAR 117 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-~~~~~eqi~ka~~R 117 (286)
+...+++.+.+....+..++......+..+.........+...|.+....+..+...+......+ +.-........+.+
T Consensus 79 s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae 158 (240)
T PF12795_consen 79 SLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAE 158 (240)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHH
Confidence 55566677777777777777777776666666666666666666666666666666655432111 11112222222344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKIND 168 (286)
Q Consensus 118 i~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~ 168 (286)
..-+...+..+..++.......+-+..++.....++..+...+..|+....
T Consensus 159 ~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln 209 (240)
T PF12795_consen 159 LAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLN 209 (240)
T ss_pred HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555544443
No 100
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.58 E-value=9.5 Score=39.29 Aligned_cols=14 Identities=14% Similarity=0.095 Sum_probs=7.5
Q ss_pred chhhHHhhhhhhcc
Q 023185 255 VQPHVETIKAVSSF 268 (286)
Q Consensus 255 ~~ph~~~~~~~~~~ 268 (286)
.+-|+.+....+.=
T Consensus 444 Lq~~~~~~~~~i~E 457 (581)
T KOG0995|consen 444 LQEHFSNKASTIEE 457 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666555443
No 101
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=93.32 E-value=0.81 Score=33.00 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 023185 74 VVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (286)
Q Consensus 74 ~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~e 120 (286)
+|+++...+..+..+|+.|.++|+.++... ..+..+...|+.||+.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v-~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADV-QAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 344444444455555555555555554444 4445666677777764
No 102
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.13 E-value=3.4 Score=39.44 Aligned_cols=68 Identities=25% Similarity=0.326 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (286)
Q Consensus 125 Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle 192 (286)
+..++.+.+....+...|+....++...+..++.....+.....+.+.....+...+-..+++...+.
T Consensus 52 l~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~ 119 (314)
T PF04111_consen 52 LEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLK 119 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444444444444444444444444444444443333
No 103
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.12 E-value=2.8 Score=37.81 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 144 ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 144 a~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
.+..++..++...+.....|+....+.+.++..+......++.+.+.+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444444444444444444443
No 104
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.01 E-value=2.9 Score=37.70 Aligned_cols=21 Identities=10% Similarity=0.449 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEK 64 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~ 64 (286)
...+..++.++.+++.+.+++
T Consensus 92 ~~rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 105
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.83 E-value=5.4 Score=33.90 Aligned_cols=63 Identities=19% Similarity=0.375 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (286)
Q Consensus 116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE 178 (286)
+-+..|+.+|..+-..+.........+-.....+.......+.++..|+.........|...+
T Consensus 52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333334444444333333333333333333333333333333333333333333333333333
No 106
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.80 E-value=24 Score=41.21 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 50 lk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
++.........+.++...+..+...+.-++..+..+..+|.....++..++
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~ 1284 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLE 1284 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444
No 107
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.76 E-value=17 Score=39.38 Aligned_cols=17 Identities=18% Similarity=0.519 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023185 119 DELEKQIDNLKKESEKQ 135 (286)
Q Consensus 119 ~eLek~Ie~Lk~eie~~ 135 (286)
..|...|+.+.++....
T Consensus 469 ~~L~d~le~~~~~~~~~ 485 (980)
T KOG0980|consen 469 TNLNDQLEELQRAAGRA 485 (980)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 108
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.59 E-value=5.2 Score=33.10 Aligned_cols=48 Identities=29% Similarity=0.389 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
+-++.+.+.|..+++++.. +...+..++..-.....+|..+-.+.+.+
T Consensus 16 ~~ve~L~s~lr~~E~E~~~-------l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELAS-------LQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555533 33344444444444445555555554444
No 109
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.54 E-value=14 Score=38.03 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=20.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 63 EKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 63 e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
.+...-...+..+..+..+|..++.+|..++.+++++++.+
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444445555555555555555555555554443
No 110
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=92.52 E-value=5.4 Score=33.10 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023185 162 KLQKINDEQKSKIRKTERA 180 (286)
Q Consensus 162 ~Lek~~~Eqk~~i~~lE~~ 180 (286)
.+++.+.+.+..++.+...
T Consensus 102 ~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 111
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.37 E-value=22 Score=39.81 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=23.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 66 QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 66 ~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
.+++..++.+.+.+..++.++..+.+++.++..+++++
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~ 531 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKN 531 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666666665555
No 112
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.27 E-value=17 Score=38.41 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=30.9
Q ss_pred CchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 023185 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK--EKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 40 ~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~--e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
.+.+-+.+..+..|+..+-.+-+.+..+++++..++... ..++.++...|+.|+.+=..+
T Consensus 404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkL 465 (961)
T KOG4673|consen 404 REEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKL 465 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 344456666666666666666555555555444444332 123444555555555544444
No 113
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.21 E-value=9.1 Score=35.00 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHhhH
Q 023185 47 LDQLKSKIRSLESHI 61 (286)
Q Consensus 47 l~elk~ki~eLes~i 61 (286)
+..++..+..+....
T Consensus 22 L~~~~~~l~~~~~~~ 36 (302)
T PF10186_consen 22 LLELRSELQQLKEEN 36 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 114
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=92.17 E-value=8.9 Score=34.82 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHhhh--hccCCchhH
Q 023185 157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT-SRSKELTEV--HSAWLPPWL 214 (286)
Q Consensus 157 ~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~-~~a~ql~~~--~g~~l~Pwl 214 (286)
+...+=+....+.....++.++..+..++..+........ ....+.... ..+..||-+
T Consensus 177 ~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae~~~~~a~~~~~~~~~~~pli 237 (240)
T PF12795_consen 177 NNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAEQAVEEAEQLQEESADLPPLI 237 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCChHh
Confidence 3333334444455556666666666666666665333322 222222111 156777754
No 115
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=92.10 E-value=16 Score=37.62 Aligned_cols=83 Identities=25% Similarity=0.312 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~I 125 (286)
-+++.......++..+..+..+++.+......+++....-..++.....-+..++.++ ...+ .|++.++..+
T Consensus 100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~------~~~k--rr~~~le~e~ 171 (546)
T KOG0977|consen 100 LLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEI------NTLK--RRIKALEDEL 171 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHH------HHHH--HHHHHHHHHH
Confidence 3333434444444444444444444444444443333333344443333333333222 2222 4555555544
Q ss_pred HHHHHHHHHHH
Q 023185 126 DNLKKESEKQQ 136 (286)
Q Consensus 126 e~Lk~eie~~~ 136 (286)
..|+.+...+.
T Consensus 172 ~~Lk~en~rl~ 182 (546)
T KOG0977|consen 172 KRLKAENSRLR 182 (546)
T ss_pred HHHHHHhhhhH
Confidence 44444444443
No 116
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.99 E-value=25 Score=39.50 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=22.0
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 58 es~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
-+.+....+.|...++.....|........++..|...++.++.+.
T Consensus 1590 ~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~ 1635 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKA 1635 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444455555555555555555555554433
No 117
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.71 E-value=15 Score=36.48 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEK 64 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~ 64 (286)
.++.++..++.++..|+..++.+
T Consensus 101 ~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 101 LLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888888888888887766543
No 118
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=91.70 E-value=0.43 Score=45.84 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 155 DLSAKLEKLQKINDEQKSKIRKTERAL 181 (286)
Q Consensus 155 el~~k~~~Lek~~~Eqk~~i~~lE~~l 181 (286)
.+...+..|+..+..+.-.|..+++.+
T Consensus 123 ~lsTdvsNLksdVSt~aL~ItdLe~RV 149 (326)
T PF04582_consen 123 ALSTDVSNLKSDVSTQALNITDLESRV 149 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhcchHhhHHHHH
Confidence 333333333344444444444444333
No 119
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.66 E-value=23 Score=38.61 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=7.5
Q ss_pred hhhhhhhCcchhH
Q 023185 226 ETHWNAHGKPAMD 238 (286)
Q Consensus 226 ~~~w~~hg~p~~~ 238 (286)
++--..||.|-++
T Consensus 550 Sseees~q~~s~~ 562 (1243)
T KOG0971|consen 550 SSEEESQQPPSVD 562 (1243)
T ss_pred hhHHHhcCCCCCc
Confidence 4445567777444
No 120
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=91.56 E-value=11 Score=34.66 Aligned_cols=169 Identities=18% Similarity=0.243 Sum_probs=79.6
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (286)
Q Consensus 54 i~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie 133 (286)
+..+..........+......++..++.+..+..++..|+.+...+-..+ ............|..+|...|..+...+.
T Consensus 26 ~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~-~~l~~~t~~t~~~a~~L~~~i~~l~~~i~ 104 (264)
T PF06008_consen 26 IEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKA-QQLNNNTERTLQRAQDLEQFIQNLQDNIQ 104 (264)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344444444444444444444444444443322 22224444445677777777777777777
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhcc
Q 023185 134 KQQKEKEALEA-----RAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSA 208 (286)
Q Consensus 134 ~~~~kk~eLEa-----~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql~~~~g~ 208 (286)
.+..+...+-. .-.++...+.+....+..|.+.. -.......+..+..++.-+.+....-......... --.
T Consensus 105 ~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~-l~~ 181 (264)
T PF06008_consen 105 ELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENES-LAE 181 (264)
T ss_pred HHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHH-HHH
Confidence 77555544433 33344445555555555554442 34444444555555555555443332211111100 012
Q ss_pred CCchhHHHHHHHHHHHHh
Q 023185 209 WLPPWLAVHLLQCQSLIE 226 (286)
Q Consensus 209 ~l~Pwla~~~~~~~~~~~ 226 (286)
-+|.+|..|...++..-.
T Consensus 182 ~i~~~L~~~~~kL~Dl~~ 199 (264)
T PF06008_consen 182 AIRDDLNDYNAKLQDLRD 199 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355566666666665443
No 121
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.46 E-value=23 Score=38.19 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQ 164 (286)
Q Consensus 121 Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Le 164 (286)
+..++.+++-.+-+.+.+.+.+..++++++++...+..-+..++
T Consensus 328 ltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~ 371 (1265)
T KOG0976|consen 328 LTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQ 371 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHH
Confidence 33344444444444444444444444444444433333333333
No 122
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.45 E-value=11 Score=34.61 Aligned_cols=118 Identities=20% Similarity=0.380 Sum_probs=54.4
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQK 137 (286)
Q Consensus 58 es~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~ 137 (286)
+....++...|....++....+..+......+..|..+....+. .......+..+++..+..|..+......
T Consensus 4 Er~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aee--------ea~~Le~k~~eaee~~~rL~~~~~~~~e 75 (246)
T PF00769_consen 4 EREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEE--------EAEELEQKRQEAEEEKQRLEEEAEMQEE 75 (246)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666666666666666666666555541 1111113444444455555555444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 138 EKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 138 kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
.+..|+. .+.++...+..|...+......-..+...+..+.....+
T Consensus 76 Ek~~Le~-------e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 76 EKEQLEQ-------ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp -----HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 444444555555555555555555555554444444333
No 123
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.43 E-value=17 Score=36.55 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 49 QLKSKIRSLESHIDEKTQ-ELKGKDEVVAQKEKAIQDKSERIVSLQKE 95 (286)
Q Consensus 49 elk~ki~eLes~i~e~~~-eL~~~d~~I~q~e~~i~e~~~eI~~Lq~e 95 (286)
++.++..-.++.+.++++ +|.....+...+-++...++.+...+++.
T Consensus 329 qleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~ 376 (493)
T KOG0804|consen 329 QLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAE 376 (493)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 444444444555555555 44444444444444444444443333333
No 124
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=91.23 E-value=7.6 Score=32.18 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 023185 147 IEAEKKISDLSAKL 160 (286)
Q Consensus 147 ~e~e~k~~el~~k~ 160 (286)
..++..+.++...+
T Consensus 101 ~~le~e~~~~~~r~ 114 (132)
T PF07926_consen 101 EQLEKELSELEQRI 114 (132)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 125
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.15 E-value=28 Score=38.52 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=15.4
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 59 SHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (286)
Q Consensus 59 s~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~ 97 (286)
+++..+...|.....++.+....+.....++..++++|+
T Consensus 683 ~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~ 721 (1141)
T KOG0018|consen 683 SKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEID 721 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444333333333333333333333333
No 126
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.09 E-value=28 Score=38.35 Aligned_cols=193 Identities=18% Similarity=0.200 Sum_probs=100.6
Q ss_pred CchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023185 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARAD 119 (286)
Q Consensus 40 ~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~ 119 (286)
+..+...+++....+..+..++.+++..|..+..+..+++..-..+..+-..|+-+|.++|..+....+. ...+-.-+.
T Consensus 253 s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~-r~~~l~~l~ 331 (1200)
T KOG0964|consen 253 SEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQ-RNLALHVLQ 331 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhh-hhhHHHHHH
Confidence 3445566666666666667777777666666666666666665555555555555555555444111110 000011222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHH
Q 023185 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK--------------------LQKINDEQKSKIRKTER 179 (286)
Q Consensus 120 eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~--------------------Lek~~~Eqk~~i~~lE~ 179 (286)
.++..|...+.++..+.-+-..|.........++..+.+.... +.........-|+.+..
T Consensus 332 ~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke 411 (1200)
T KOG0964|consen 332 KVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKE 411 (1200)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2333444555555554444444444444444444444443222 22334455566666666
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhhhh------ccC------CchhHHHHHHHHHHHHhhhhhhhC
Q 023185 180 ALKVAEEEMMRAKFEATSRSKELTEVH------SAW------LPPWLAVHLLQCQSLIETHWNAHG 233 (286)
Q Consensus 180 ~lq~~Eeei~kle~Ea~~~a~ql~~~~------g~~------l~Pwla~~~~~~~~~~~~~w~~hg 233 (286)
....++.++..+..+..++..++.+.. +.- ...-+--.++-++..-...|.+-.
T Consensus 412 ~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~ 477 (1200)
T KOG0964|consen 412 QENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEK 477 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777776666553222 111 122244556666777778888743
No 127
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=91.09 E-value=9.6 Score=33.07 Aligned_cols=133 Identities=16% Similarity=0.256 Sum_probs=66.3
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHH
Q 023185 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE--------------TLNAAEQVDKAHA 116 (286)
Q Consensus 51 k~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl--------------~~~~~eqi~ka~~ 116 (286)
+.-|..+++.+.++..=-.....+...+.+++.++..++..+-.+++.++..- ....+.++-.|..
T Consensus 5 ~~ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe 84 (159)
T PF05384_consen 5 KKTIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYE 84 (159)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHH
Confidence 34455555555555555555566666666666666666666666666665322 0001222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
. ...++-.+--.+.+...|..++.+++.++..+...++..+....+-...+.=+..++..+-..+..
T Consensus 85 ~-------A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~ 151 (159)
T PF05384_consen 85 E-------AHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIED 151 (159)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3 333333444444444445555555555555555555555555555555555555555544444443
No 128
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.02 E-value=14 Score=39.32 Aligned_cols=16 Identities=25% Similarity=0.140 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 023185 181 LKVAEEEMMRAKFEAT 196 (286)
Q Consensus 181 lq~~Eeei~kle~Ea~ 196 (286)
+...-++|.++..+.+
T Consensus 694 L~~~~~~I~~~v~~ik 709 (717)
T PF10168_consen 694 LKQQGEEIDELVKQIK 709 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444333333
No 129
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=90.83 E-value=11 Score=33.46 Aligned_cols=54 Identities=9% Similarity=0.150 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
+++-+.+++..+..++..+..+ -..-..++..+......+...+......-..+
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~-------~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g 81 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARV-------MANQKRLERKLDEAEEEAEKWEKQAELALAAG 81 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4445555555555554444444 44444444444444455555555544443333
No 130
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=90.78 E-value=21 Score=36.48 Aligned_cols=68 Identities=26% Similarity=0.306 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
.+..|-.+|.++++.+..+.-+++++............++......+++. ..+....+..+++++..+
T Consensus 234 e~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk-------yAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 234 ENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK-------YAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh
Confidence 34445556666666666666666666666555555555555555444444 444444444555555544
No 131
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.77 E-value=12 Score=33.51 Aligned_cols=45 Identities=22% Similarity=0.302 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV 90 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~ 90 (286)
++.+++.+....+..+.++..+.+.+.+-+..++.+..++..++.
T Consensus 35 ei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~ 79 (201)
T PF13851_consen 35 EIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLK 79 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444433333333333
No 132
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.70 E-value=29 Score=37.94 Aligned_cols=10 Identities=20% Similarity=0.537 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 023185 111 VDKAHARADE 120 (286)
Q Consensus 111 i~ka~~Ri~e 120 (286)
+..-+.|+++
T Consensus 373 lEqqN~rLKd 382 (1243)
T KOG0971|consen 373 LEQQNARLKD 382 (1243)
T ss_pred HHHHHHHHHH
Confidence 3333444444
No 133
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.33 E-value=11 Score=36.84 Aligned_cols=44 Identities=14% Similarity=0.260 Sum_probs=19.5
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 56 eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
+..+.++.+.+-.......+......+..+..+|.....+|.+-
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sR 260 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESR 260 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444333
No 134
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=90.29 E-value=38 Score=38.64 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhhHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKT 65 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~ 65 (286)
++++++.++..++..+..+.
T Consensus 231 ~~~~~~~~le~l~~~~~~l~ 250 (1353)
T TIGR02680 231 QLDEYRDELERLEALERALR 250 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554443
No 135
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.26 E-value=3.9 Score=35.17 Aligned_cols=62 Identities=19% Similarity=0.354 Sum_probs=34.4
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVV--AQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I--~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+...+..++.+++.++.+++.....+..++..+...+ .++...|..++.++..+++.+..++
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666655555555555544 3445555555555555555555554
No 136
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.16 E-value=11 Score=39.16 Aligned_cols=31 Identities=26% Similarity=0.414 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 155 DLSAKLEKLQKINDEQKSKIRKTERALKVAE 185 (286)
Q Consensus 155 el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~E 185 (286)
.+...+..|+....+....++.|++.+..+.
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555554444
No 137
>PF14282 FlxA: FlxA-like protein
Probab=90.14 E-value=2.9 Score=33.61 Aligned_cols=57 Identities=28% Similarity=0.412 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
......+..|+.+|..|+.++.++...- +....+++..+..+..+|..|+..|..++
T Consensus 15 ~~~~~~I~~L~~Qi~~Lq~ql~~l~~~~---~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 15 GSSDSQIEQLQKQIKQLQEQLQELSQDS---DLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347888888888888888888776631 11222334444444455555555554444
No 138
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.11 E-value=26 Score=36.50 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 023185 124 QIDNLKKESEKQ 135 (286)
Q Consensus 124 ~Ie~Lk~eie~~ 135 (286)
.|..|-.+++..
T Consensus 293 ~i~~L~~di~~~ 304 (629)
T KOG0963|consen 293 EIAQLSNDIERL 304 (629)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 139
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.82 E-value=20 Score=34.60 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL--------------EKLQKINDEQKSKIRKTERALKVAEEEMM 189 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~--------------~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~ 189 (286)
.+..|+.++...-.+++++...+..-..+...+|..+ +.+--.+.-.+..|..++.....+..-+.
T Consensus 141 q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~ 220 (319)
T PF09789_consen 141 QIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTIN 220 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444333 33444444555555555555555555555
Q ss_pred HHHHH
Q 023185 190 RAKFE 194 (286)
Q Consensus 190 kle~E 194 (286)
++..-
T Consensus 221 KYK~~ 225 (319)
T PF09789_consen 221 KYKSA 225 (319)
T ss_pred HHHHH
Confidence 55443
No 140
>PF13514 AAA_27: AAA domain
Probab=89.75 E-value=37 Score=37.72 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 144 ARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKT 177 (286)
Q Consensus 144 a~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~l 177 (286)
.....+...+..++..+..+.......+..+..+
T Consensus 896 ~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l 929 (1111)
T PF13514_consen 896 AELEELEEELEELEEELEELQEERAELEQELEAL 929 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444433
No 141
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=89.69 E-value=11 Score=39.12 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEA 149 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~ 149 (286)
.++.+...|..|...+.......+.|+.+.+.+
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555444444444444433
No 142
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=89.63 E-value=5.9 Score=36.81 Aligned_cols=63 Identities=24% Similarity=0.339 Sum_probs=29.9
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNL 128 (286)
Q Consensus 51 k~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~L 128 (286)
...+..|+..+...++-+-++. ..|..++.+|..|.+.|+.++ .++...+.|-+++...|+.+
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~-------~ql~~lq~ev~~LrG~~E~~~--------~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQ-------QQLSDNQSDIDSLRGQIQENQ--------YQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHHhhHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 3555556655554444344444 444444444444555544444 22222234555555555553
No 143
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.44 E-value=30 Score=36.13 Aligned_cols=47 Identities=11% Similarity=0.307 Sum_probs=32.9
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 023185 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE 87 (286)
Q Consensus 41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~ 87 (286)
..+..++++++.++..++.+.+.+.+++..++..++.++..+..++.
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777777777777777777777777777766665544
No 144
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.39 E-value=32 Score=36.49 Aligned_cols=82 Identities=23% Similarity=0.178 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhccCCchhHHHHHH
Q 023185 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPPWLAVHLL 219 (286)
Q Consensus 140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql~~~~g~~l~Pwla~~~~ 219 (286)
.++......+...+...++.+.+++....+....+...-.....+++++.++........+ ..+|.--.|.|+.+..
T Consensus 562 ~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~---~~~~~s~d~~L~EElk 638 (698)
T KOG0978|consen 562 QEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK---EESGASADEVLAEELK 638 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccccccccHHHHHHHH
Confidence 3333333444444444445555555555555555555555555555555555433332211 1225556677888877
Q ss_pred HHHHH
Q 023185 220 QCQSL 224 (286)
Q Consensus 220 ~~~~~ 224 (286)
.|...
T Consensus 639 ~yK~~ 643 (698)
T KOG0978|consen 639 EYKEL 643 (698)
T ss_pred HHHhc
Confidence 77654
No 145
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.33 E-value=33 Score=36.46 Aligned_cols=154 Identities=22% Similarity=0.266 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK-------EKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKA 114 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~-------e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka 114 (286)
++..++.-..+-..+++.++..+..++.+.|.+==.+ ...++.+..+...|...|..+. ......
T Consensus 451 ~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~--------~~~~~~ 522 (698)
T KOG0978|consen 451 CLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLK--------ASVDKL 522 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Confidence 3444555555666666666666666666666543222 2233333333333333333332 222222
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 115 HARADELEK-------QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (286)
Q Consensus 115 ~~Ri~eLek-------~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eee 187 (286)
..+++.|++ .+..+.+++......++.+.....++......+...++..+..+.+-+..++.+...+...-..
T Consensus 523 ~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k 602 (698)
T KOG0978|consen 523 ELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFK 602 (698)
T ss_pred HHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 4444455555555555555555555566666666666666666666666666666555555555
Q ss_pred HHHHHHHhhhhhHHHh
Q 023185 188 MMRAKFEATSRSKELT 203 (286)
Q Consensus 188 i~kle~Ea~~~a~ql~ 203 (286)
..+++.+......++.
T Consensus 603 ~~rleEE~e~L~~kle 618 (698)
T KOG0978|consen 603 RKRLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555554443
No 146
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.31 E-value=17 Score=33.19 Aligned_cols=17 Identities=35% Similarity=0.644 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESE 133 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie 133 (286)
|+..++..|+.++..++
T Consensus 71 r~~~l~~~i~~~~~~i~ 87 (302)
T PF10186_consen 71 RLERLRERIERLRKRIE 87 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 147
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.29 E-value=36 Score=36.88 Aligned_cols=60 Identities=17% Similarity=0.295 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERA 180 (286)
Q Consensus 121 Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~ 180 (286)
+.+...+|.++.......-..+.......+..+..+....+..+..+++++..+-.++.-
T Consensus 349 fddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 349 FDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 333333433333333333333333334444444444455555555555555555555444
No 148
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=89.26 E-value=15 Score=32.50 Aligned_cols=60 Identities=23% Similarity=0.409 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKAHARADELEKQIDNLKKESE 133 (286)
Q Consensus 71 ~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie 133 (286)
+...++.+++.+......|..++.+|....... .-..+..++. ++..|++.+..|+.++.
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~---~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLE---ELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555553222 1122232222 55555555555555555
No 149
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=89.18 E-value=21 Score=36.27 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 143 EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (286)
Q Consensus 143 Ea~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~l 181 (286)
-+.+..+-..+...+.+.+.|.+.+.+++..++..-..+
T Consensus 374 n~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~sl 412 (622)
T COG5185 374 NQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSL 412 (622)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444444444555556666666665555544443333
No 150
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=89.16 E-value=0.97 Score=43.46 Aligned_cols=48 Identities=29% Similarity=0.392 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 52 ~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
..+..+.+.+.+++.+|..+...|.+....|+.++..|..++..|+.+
T Consensus 49 ~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~l 96 (326)
T PF04582_consen 49 DSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSL 96 (326)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333334444444444444444444443333333
No 151
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=89.12 E-value=24 Score=34.56 Aligned_cols=14 Identities=14% Similarity=0.181 Sum_probs=5.0
Q ss_pred HhhHHHHHHhhhhH
Q 023185 58 ESHIDEKTQELKGK 71 (286)
Q Consensus 58 es~i~e~~~eL~~~ 71 (286)
+.++.++.+++...
T Consensus 177 ~~ql~~~~~~l~~a 190 (444)
T TIGR03017 177 VQQIAALREDLARA 190 (444)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 152
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=88.90 E-value=0.12 Score=55.51 Aligned_cols=161 Identities=21% Similarity=0.328 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA 118 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri 118 (286)
.-..+...++.++.++..|+.....+..++..+...++........+......+...+...+.+. -........++...
T Consensus 329 ~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~-~~~~~e~d~~q~e~ 407 (859)
T PF01576_consen 329 KLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKV-EELQAERDAAQREA 407 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 33444556666666666666666666666666655555555555555555555555555544333 11111122222222
Q ss_pred HH-------HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 119 DE-------LEKQ-------IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (286)
Q Consensus 119 ~e-------Lek~-------Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~ 184 (286)
+. |+.. ++.+.............|.....+....+.++...+..|+..+.+++..+..++.++...
T Consensus 408 r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~ 487 (859)
T PF01576_consen 408 RELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAE 487 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2222 333333333333333334444444455566677777777777777777777777777777
Q ss_pred HHHHHHHHHHhhhhhH
Q 023185 185 EEEMMRAKFEATSRSK 200 (286)
Q Consensus 185 Eeei~kle~Ea~~~a~ 200 (286)
+....+++.+....-.
T Consensus 488 E~~~lRl~~el~~~r~ 503 (859)
T PF01576_consen 488 EQKKLRLQVELQQLRQ 503 (859)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777776666655433
No 153
>PRK04406 hypothetical protein; Provisional
Probab=88.88 E-value=5.1 Score=30.39 Aligned_cols=51 Identities=22% Similarity=0.241 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
..++.|..+++.++.-.+..++.|.+.+.+|+..|+.+.+.+..+-..+..
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457888888888888999999999999999999999998887777555544
No 154
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=88.86 E-value=2.9 Score=31.00 Aligned_cols=51 Identities=27% Similarity=0.400 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (286)
Q Consensus 142 LEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle 192 (286)
++.+..+++.++.-.+..++.|.+.+.+|+..|+.+++.+..+...+..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577778888888888888889999999999999999988888877777664
No 155
>PRK15396 murein lipoprotein; Provisional
Probab=88.58 E-value=4.2 Score=31.23 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=8.4
Q ss_pred CchhHHHHHHHHHHH
Q 023185 1 MAASKLVIFSLFFAL 15 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (286)
|...+|++.++.+++
T Consensus 1 m~~~kl~l~av~ls~ 15 (78)
T PRK15396 1 MNRTKLVLGAVILGS 15 (78)
T ss_pred CchhHHHHHHHHHHH
Confidence 555566666555433
No 156
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=88.54 E-value=8.3 Score=33.09 Aligned_cols=33 Identities=27% Similarity=0.438 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK 78 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~ 78 (286)
++..+..+|.+|+.++.++..+++.+..++..+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASL 105 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333333333333
No 157
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.22 E-value=34 Score=35.32 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=16.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 61 i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
|+...++.+.+.+.++.++..+.++....-.+++...++
T Consensus 333 Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassL 371 (654)
T KOG4809|consen 333 IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSL 371 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444443333
No 158
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.98 E-value=51 Score=36.99 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 155 DLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 155 el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
..+...+=.+...+....+++.++..++.++..+..
T Consensus 198 s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~ 233 (1109)
T PRK10929 198 SANNRQELARLRSELAKKRSQQLDAYLQALRNQLNS 233 (1109)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555666666666666666655
No 159
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=87.93 E-value=14 Score=30.92 Aligned_cols=54 Identities=13% Similarity=0.307 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
-++|++.-.. |.+.+..++++|..+|..+++.....+.+.+++..+...++...
T Consensus 49 ~kql~~vs~~---l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~ 102 (126)
T PF07889_consen 49 SKQLEQVSES---LSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIG 102 (126)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3445444443 44455555677777777777777777777777766666666664
No 160
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=87.64 E-value=26 Score=33.20 Aligned_cols=46 Identities=24% Similarity=0.242 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023185 155 DLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (286)
Q Consensus 155 el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ 200 (286)
--+..+.-++.....-+.+|..++..++....++++.+..+.....
T Consensus 92 ~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~ 137 (307)
T PF10481_consen 92 VKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDV 137 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 3344455555555666778999999999999999998877765443
No 161
>PRK00295 hypothetical protein; Provisional
Probab=87.57 E-value=6 Score=29.39 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 142 LEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
++++..+++.++.-.+..++.|.+.+.+|+..|+.+.+.+..+-..+..+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677788888888888888888889999999988888877776655554
No 162
>PRK02793 phi X174 lysis protein; Provisional
Probab=87.53 E-value=5.8 Score=29.81 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 141 eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
.+++|..+++.++.-.+..++.|.+.+.+|+..|+.+.+.+..+-..+..+
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 477888888888888888999999999999999998888877776655543
No 163
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=87.38 E-value=56 Score=36.82 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=39.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 66 QELKGKDEVVAQKEKAIQDKS-ERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEA 144 (286)
Q Consensus 66 ~eL~~~d~~I~q~e~~i~e~~-~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa 144 (286)
...+++++.|.++.....+++ .+++-+|.++...+.+. ...+.++.+...+++.++++++.+++.........+.+.+
T Consensus 465 ~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~-~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~ 543 (1317)
T KOG0612|consen 465 EMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKL-SEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNS 543 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 445555555555555555555 35555666666555333 2222333333445555555555554444444333333333
Q ss_pred HHHHH
Q 023185 145 RAIEA 149 (286)
Q Consensus 145 ~~~e~ 149 (286)
.+..+
T Consensus 544 ~rk~l 548 (1317)
T KOG0612|consen 544 LRKQL 548 (1317)
T ss_pred HHHHH
Confidence 33333
No 164
>PRK00736 hypothetical protein; Provisional
Probab=87.37 E-value=5.5 Score=29.58 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 142 LEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
++.+..+++.++...+..++.|.+.+.+|+..|+.+.+.+..+-..+...
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677788888888888888999999999999999998887776666553
No 165
>PRK02119 hypothetical protein; Provisional
Probab=87.31 E-value=6.4 Score=29.65 Aligned_cols=52 Identities=29% Similarity=0.260 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
..+++|..+++.++.-.+..++.|.+.+.+|+..|+.+.+.+..+-..+..+
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4577888888888888888888899999999999988888877776555443
No 166
>PRK04325 hypothetical protein; Provisional
Probab=87.26 E-value=6.4 Score=29.73 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 141 ALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 141 eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
.++.+..+++.++.-.+..++.|.+.+.+|+..|+.+.+.+..+-..+..+
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777788888888888888888888899999988888877776655443
No 167
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=87.07 E-value=0.84 Score=48.12 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKE 95 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~e 95 (286)
..+.+++..-..|..+...+..++..++..+..++.++.....++..+...
T Consensus 343 ~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~ 393 (722)
T PF05557_consen 343 RALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEAS 393 (722)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333333333333333
No 168
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=86.47 E-value=0.21 Score=52.52 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhH
Q 023185 45 IELDQLKSKIRSLESHI 61 (286)
Q Consensus 45 ~el~elk~ki~eLes~i 61 (286)
.++..++.++..++...
T Consensus 246 ~ql~~L~~el~~~e~~~ 262 (713)
T PF05622_consen 246 AQLRRLREELERLEEQR 262 (713)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 169
>PHA03332 membrane glycoprotein; Provisional
Probab=86.39 E-value=57 Score=36.29 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE 79 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e 79 (286)
+++=+.-..+..+.+.|...+..+..+...+.+.=
T Consensus 884 ~~llqnaaaia~mksaIg~tNaAV~~lsDai~klG 918 (1328)
T PHA03332 884 NQLLQATAATAEMASKIGGLNARVDKTSDVITKLG 918 (1328)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555554444444444444333
No 170
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=86.31 E-value=18 Score=30.00 Aligned_cols=38 Identities=21% Similarity=0.408 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i 82 (286)
.+++++......++..++.+...+..+...+.+...-+
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~ 43 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAK 43 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555555555555554444333
No 171
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=86.07 E-value=26 Score=31.65 Aligned_cols=43 Identities=28% Similarity=0.421 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS 86 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~ 86 (286)
+.++.+.+.+....+..+......+.++..++...+.++....
T Consensus 37 r~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~ 79 (202)
T PF06818_consen 37 RAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKK 79 (202)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHh
Confidence 3334444444444444444444333333334443343333333
No 172
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=85.96 E-value=30 Score=32.35 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 161 EKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (286)
Q Consensus 161 ~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~ 196 (286)
..+.+........|++++..+..+..++..+.....
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555555555555555555555555555544443
No 173
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.92 E-value=28 Score=31.93 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023185 163 LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (286)
Q Consensus 163 Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~ 198 (286)
|+.+..+.+..............+++..+..+.+..
T Consensus 65 lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 65 LENIIKQAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444444433
No 174
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.54 E-value=41 Score=33.44 Aligned_cols=33 Identities=9% Similarity=0.085 Sum_probs=26.9
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGK 71 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~ 71 (286)
+...+..+++.++.++..++.+...+..+++..
T Consensus 91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778899999999999999888887777654
No 175
>PRK00846 hypothetical protein; Provisional
Probab=85.51 E-value=11 Score=28.86 Aligned_cols=54 Identities=20% Similarity=0.286 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (286)
Q Consensus 139 k~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle 192 (286)
-+.+++|..+++.++.-.+..++.|.+.+..|+..|+.+...+..+-..+..++
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788888888888888888888888888899999888888777766665553
No 176
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.42 E-value=36 Score=32.70 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKD 72 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d 72 (286)
++++...++..+.-.......+..+++.+.
T Consensus 32 L~qen~~Lk~El~~ek~~~~~L~~e~~~lr 61 (310)
T PF09755_consen 32 LQQENRVLKRELETEKARCKHLQEENRALR 61 (310)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 177
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=85.38 E-value=33 Score=32.25 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLe 122 (286)
+.+...+++..+.+.+....++..+ ++.+++++++...++....+.|-.+...++.+. -+..-+-+ ..+..|+
T Consensus 25 ykq~f~~~reEl~EFQegSrE~Eae---lesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~-e~q~~q~y---~q~s~Le 97 (333)
T KOG1853|consen 25 YKQHFLQMREELNEFQEGSREIEAE---LESQLDQLETRNRDLETRNQRLTTEQERNKEKQ-EDQRVQFY---QQESQLE 97 (333)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHH
Confidence 4556677788888887777776654 577888888888888888888888888776544 11111111 2444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 123 KQIDNLKKESEKQQKEKEALEARAIEA 149 (286)
Q Consensus 123 k~Ie~Lk~eie~~~~kk~eLEa~~~e~ 149 (286)
+.+...++..+.+.....+||..-.++
T Consensus 98 ddlsqt~aikeql~kyiReLEQaNDdL 124 (333)
T KOG1853|consen 98 DDLSQTHAIKEQLRKYIRELEQANDDL 124 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 555555555555555555555444444
No 178
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.26 E-value=65 Score=35.59 Aligned_cols=24 Identities=13% Similarity=0.226 Sum_probs=15.0
Q ss_pred HHHHhHHhhhhhchhhHHhhhhhh
Q 023185 243 KALEKKAQAGKWVQPHVETIKAVS 266 (286)
Q Consensus 243 ~~~~~~~~~~~~~~ph~~~~~~~~ 266 (286)
.-+.-+-+|-.|..-|=..||..|
T Consensus 427 ~~~~d~~dAy~wlrenr~~FK~~v 450 (1072)
T KOG0979|consen 427 QGSSDAYDAYQWLRENRSEFKDEV 450 (1072)
T ss_pred cCchHHHHHHHHHHHCHHHhcccc
Confidence 334445567777777776666654
No 179
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=85.24 E-value=20 Score=29.69 Aligned_cols=39 Identities=13% Similarity=0.294 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD 84 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e 84 (286)
++...=.+..+|+++++.+.-+...++..|.+.++-+++
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~E 45 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEE 45 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555554444333
No 180
>PRK02119 hypothetical protein; Provisional
Probab=85.06 E-value=7 Score=29.47 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (286)
Q Consensus 48 ~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~ 97 (286)
..+..+|..||..+.=...-|..++..+..-++.|..+..++..|-..+.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~ 54 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLK 54 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554444444444444444444444444444444444443
No 181
>PRK04406 hypothetical protein; Provisional
Probab=84.43 E-value=9.2 Score=29.02 Aligned_cols=49 Identities=16% Similarity=0.324 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (286)
Q Consensus 49 elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~ 97 (286)
.+..+|.+||..+.=...-|..++..+.+-++.|..+..++..|-..+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444443
No 182
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=84.30 E-value=22 Score=29.40 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIE 148 (286)
Q Consensus 116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e 148 (286)
+|+..+++.+..+..++...+...+.+......
T Consensus 101 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 101 KRKEELEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554444444444333
No 183
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=84.19 E-value=33 Score=31.32 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 023185 124 QIDNLKKESE 133 (286)
Q Consensus 124 ~Ie~Lk~eie 133 (286)
.+..++....
T Consensus 100 ~~~~~~~~~~ 109 (225)
T COG1842 100 LAKALEAELQ 109 (225)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 184
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=84.10 E-value=30 Score=30.74 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=22.7
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 57 LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 57 Les~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
|+..|.++...+......+...-..-..++.++..+...+...+.
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~ 72 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEK 72 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555555555555555555555543
No 185
>PF14282 FlxA: FlxA-like protein
Probab=83.99 E-value=5.3 Score=32.10 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023185 118 ADELEKQIDNLKKESEKQ 135 (286)
Q Consensus 118 i~eLek~Ie~Lk~eie~~ 135 (286)
+..|..+|..|..+|..+
T Consensus 53 ~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444433
No 186
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=83.96 E-value=7 Score=28.96 Aligned_cols=48 Identities=19% Similarity=0.376 Sum_probs=18.2
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 52 ~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
.+|.+||..+.=...-|..++..+..-+..|..+...+..|..++.+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444433333333344444444444444444444444444333
No 187
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=83.86 E-value=87 Score=35.86 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=6.2
Q ss_pred hHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSL 57 (286)
Q Consensus 43 l~~el~elk~ki~eL 57 (286)
++..++.++..+..|
T Consensus 235 ~~~~le~l~~~~~~l 249 (1353)
T TIGR02680 235 YRDELERLEALERAL 249 (1353)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 188
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=83.51 E-value=83 Score=35.36 Aligned_cols=38 Identities=5% Similarity=0.115 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023185 165 KINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (286)
Q Consensus 165 k~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql 202 (286)
+...++-..++.+-++...++..++++....+.+..++
T Consensus 272 ~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi 309 (1109)
T PRK10929 272 QALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS 309 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443333333333
No 189
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=83.26 E-value=48 Score=32.42 Aligned_cols=20 Identities=10% Similarity=0.408 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhhHHH
Q 023185 44 KIELDQLKSKIRSLESHIDE 63 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e 63 (286)
..++.+++.++...+.+..+
T Consensus 214 ~~~l~~l~~~l~~~~~~~~~ 233 (444)
T TIGR03017 214 RARLNELSAQLVAAQAQVMD 233 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666655555433
No 190
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=83.06 E-value=29 Score=29.78 Aligned_cols=49 Identities=20% Similarity=0.283 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 023185 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEK---AIQDKSERIVSLQKELSS 98 (286)
Q Consensus 50 lk~ki~eLes~i~e~~~eL~~~d~~I~q~e~---~i~e~~~eI~~Lq~eI~~ 98 (286)
.+.+...++.+.+.+..+|...+..|..+.+ ...+++.+|..|+.+...
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~ 69 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKT 69 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555555554 555555555555555553
No 191
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=82.74 E-value=27 Score=29.25 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.+-+=+..+=.....--...+.+...+..++..+..++..+..+..++..++.++...+
T Consensus 35 ~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~ 93 (151)
T PF11559_consen 35 RVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAE 93 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555566666666666666666666666666666666665554
No 192
>PRK04325 hypothetical protein; Provisional
Probab=82.70 E-value=10 Score=28.66 Aligned_cols=49 Identities=14% Similarity=0.284 Sum_probs=23.3
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 51 k~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
..+|.+||.++.=...-|..++..+.+-++.|..+..++..|-.++.+.
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444445555555555555555555554444443
No 193
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.67 E-value=73 Score=34.09 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
.+..++.+++..+.++....+....+...+.............++.+...|-.+|...
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~ 88 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEY 88 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555555555444
No 194
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=82.64 E-value=51 Score=32.29 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 023185 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE 120 (286)
Q Consensus 72 d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~e 120 (286)
...-++++..+.....+|..++..|..+++.+ .+...-+.-|+.|+..
T Consensus 257 ~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai-~~k~~~lkvaqTRL~~ 304 (384)
T PF03148_consen 257 QEAKNELEWQLKKTLQEIAEMEKNIEDLEKAI-RDKEGPLKVAQTRLEN 304 (384)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHhh
Confidence 33334444444444455555555555554444 2222233333445444
No 195
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=82.55 E-value=66 Score=33.96 Aligned_cols=112 Identities=17% Similarity=0.234 Sum_probs=65.9
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHH
Q 023185 36 DAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE--TLNAAEQVDK 113 (286)
Q Consensus 36 ~~~~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl--~~~~~eqi~k 113 (286)
.+++...++-.|-.+......|.=+.+-++.++..--++|..+|.-|.+++.+++..+.-+ |.++ ....+.+.+.
T Consensus 102 s~~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmL---QqellsrtsLETqKlD 178 (861)
T KOG1899|consen 102 SCPEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEML---QQELLSRTSLETQKLD 178 (861)
T ss_pred cCCcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHH---HHHHHhhhhHHHHHhH
Confidence 3456667777787777777777777777888888888888888888888888776655443 3322 1112233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 114 AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (286)
Q Consensus 114 a~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~ 157 (286)
..+. |..||=.+..++.+..+.|.+.+..+..+.+++
T Consensus 179 Lmae-------vSeLKLkltalEkeq~e~E~K~R~se~l~qevn 215 (861)
T KOG1899|consen 179 LMAE-------VSELKLKLTALEKEQNETEKKLRLSENLMQEVN 215 (861)
T ss_pred HHHH-------HHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence 2223 444444444444444444555555555555544
No 196
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=82.51 E-value=32 Score=29.85 Aligned_cols=45 Identities=13% Similarity=0.316 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSER 88 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~e 88 (286)
+++.+.++..+.++...+..+-.+.+.+...-...-..+.+.+..
T Consensus 26 R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~ 70 (159)
T PF05384_consen 26 RQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRN 70 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444444444444444444444444444444444444433
No 197
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.39 E-value=31 Score=29.71 Aligned_cols=105 Identities=20% Similarity=0.204 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---
Q 023185 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSK--- 200 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~--- 200 (286)
....|...+++.+.+...|..........++-...++..+.......+..|......+..+..++..+..+-.....
T Consensus 50 en~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~ 129 (177)
T PF13870_consen 50 ENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNK 129 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666665565555555555555555555555555555556666666666666666555544443322
Q ss_pred HHhhhhccCCchhHHHHHHHHHHHHhhh
Q 023185 201 ELTEVHSAWLPPWLAVHLLQCQSLIETH 228 (286)
Q Consensus 201 ql~~~~g~~l~Pwla~~~~~~~~~~~~~ 228 (286)
.+...+|.+-.|-|--.|+.+.......
T Consensus 130 ~l~~~~~~~~~P~ll~Dy~~~~~~~~~l 157 (177)
T PF13870_consen 130 KLRQQGGLLGVPALLRDYDKTKEEVEEL 157 (177)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 3344457777777776677776655443
No 198
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=82.19 E-value=61 Score=32.90 Aligned_cols=63 Identities=22% Similarity=0.249 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Ee 186 (286)
.|.+|+..++.+...+-..--.++++++.+.-+...++..++-..+-...-..+.=+++.+..
T Consensus 363 iinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~ 425 (527)
T PF15066_consen 363 IINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKA 425 (527)
T ss_pred HHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 566666666666555544444445555544444444444444444444443333333333333
No 199
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=82.05 E-value=37 Score=30.28 Aligned_cols=51 Identities=29% Similarity=0.368 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 109 EQVDKAHARADELEKQIDNL-KKESEKQQKEKEALEARAIEAEKKISDLSAK 159 (286)
Q Consensus 109 eqi~ka~~Ri~eLek~Ie~L-k~eie~~~~kk~eLEa~~~e~e~k~~el~~k 159 (286)
.++.+.+..+..|++++.+- =.+.+....+...++.+..+.+.++..+...
T Consensus 96 ~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 96 EELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433311 1223444444455555555555555554443
No 200
>PRK09343 prefoldin subunit beta; Provisional
Probab=81.67 E-value=28 Score=28.58 Aligned_cols=18 Identities=11% Similarity=0.418 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 023185 46 ELDQLKSKIRSLESHIDE 63 (286)
Q Consensus 46 el~elk~ki~eLes~i~e 63 (286)
++.+.-.+...++.++..
T Consensus 8 ~~q~~~~~~q~lq~~l~~ 25 (121)
T PRK09343 8 EVQAQLAQLQQLQQQLER 25 (121)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 201
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=81.53 E-value=61 Score=32.43 Aligned_cols=53 Identities=17% Similarity=0.124 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI 96 (286)
.+.+-+++.++++-++..+.+..++..+..+-...-..+..++..|+.|+.+.
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~ 64 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEEN 64 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444444444444444444444444443
No 202
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=81.50 E-value=48 Score=31.20 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023185 124 QIDNLKKESEKQQKEKEALE 143 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLE 143 (286)
++..|..++-.....++.|.
T Consensus 92 q~s~Leddlsqt~aikeql~ 111 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLR 111 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433333333
No 203
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=81.39 E-value=7.4 Score=37.42 Aligned_cols=8 Identities=13% Similarity=0.297 Sum_probs=4.1
Q ss_pred hhccCCch
Q 023185 205 VHSAWLPP 212 (286)
Q Consensus 205 ~~g~~l~P 212 (286)
|.|.|-++
T Consensus 323 Y~G~f~~~ 330 (344)
T PF12777_consen 323 YLGPFTPE 330 (344)
T ss_dssp CCCCTSHH
T ss_pred HcCCCCHH
Confidence 44655444
No 204
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=81.16 E-value=57 Score=32.37 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 124 QIDNLKKESEKQQKEK-EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk-~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE 178 (286)
+|..||.++..+..+. .....+++++..-+.....++..|+....+|-.++.-++
T Consensus 277 Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~ 332 (395)
T PF10267_consen 277 EIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQLEGTE 332 (395)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 6777777777665555 455678888888888888888888833333444444444
No 205
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=80.93 E-value=71 Score=32.84 Aligned_cols=81 Identities=21% Similarity=0.287 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMM 189 (286)
Q Consensus 110 qi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~ 189 (286)
++..+|..++-+.++|..+-.+.-.+..+.-.|.+...++.++...+.-.++.+......++..-+++...+...++.+.
T Consensus 206 elrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyA 285 (596)
T KOG4360|consen 206 ELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYA 285 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33444456666666677777777777667777777777777777776666666666666666666666666665555555
Q ss_pred H
Q 023185 190 R 190 (286)
Q Consensus 190 k 190 (286)
+
T Consensus 286 E 286 (596)
T KOG4360|consen 286 E 286 (596)
T ss_pred H
Confidence 4
No 206
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=80.57 E-value=22 Score=27.98 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=28.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185 62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (286)
Q Consensus 62 ~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkk 102 (286)
.....+|..+|.+-.++...++.+..+.+.+..+|......
T Consensus 25 ~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~ 65 (108)
T PF02403_consen 25 EEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKA 65 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC
Confidence 34556667777777777777777777777777777666543
No 207
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=80.40 E-value=54 Score=31.09 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=15.2
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKT 65 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~ 65 (286)
|...++.++++++.++...+.+++...
T Consensus 80 d~~~~~~~l~~a~a~l~~a~a~l~~~~ 106 (346)
T PRK10476 80 DPRPYELTVAQAQADLALADAQIMTTQ 106 (346)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666665554443
No 208
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=80.38 E-value=19 Score=37.45 Aligned_cols=69 Identities=14% Similarity=0.253 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 128 LKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (286)
Q Consensus 128 Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~ 196 (286)
.+.-++....+.-+||.+++++...+++++.+++.+++..-..+..+..++..+.+++..+.++....+
T Consensus 84 ~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~ 152 (907)
T KOG2264|consen 84 QKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNN 152 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcC
Confidence 333344555556778888888888888888888888888888888888888888888887777655444
No 209
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=80.16 E-value=76 Score=32.68 Aligned_cols=33 Identities=33% Similarity=0.339 Sum_probs=20.0
Q ss_pred HhhhhhchhhHHhhhhhhccCcCchHHHHHHHHH
Q 023185 249 AQAGKWVQPHVETIKAVSSFSYSSIPEILKYIEE 282 (286)
Q Consensus 249 ~~~~~~~~ph~~~~~~~~~~~~~~~~~~~~~~~~ 282 (286)
.+..++...-.+.+... ...||.|-+.++.+.+
T Consensus 354 ~~l~~~~~~~~~~i~~~-~~~yS~i~~~l~~~~~ 386 (560)
T PF06160_consen 354 KELEKRYEDLEERIEEQ-QVPYSEIQEELEEIEE 386 (560)
T ss_pred HHHHHHHHHHHHHHHcC-CcCHHHHHHHHHHHHH
Confidence 34455555555555555 5678887777766543
No 210
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=80.04 E-value=0.55 Score=49.41 Aligned_cols=19 Identities=26% Similarity=0.590 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEK 64 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~ 64 (286)
++..++.++..|+.+....
T Consensus 240 ~~~~l~~ql~~L~~el~~~ 258 (713)
T PF05622_consen 240 ELADLRAQLRRLREELERL 258 (713)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 211
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=79.90 E-value=63 Score=31.62 Aligned_cols=57 Identities=23% Similarity=0.329 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (286)
Q Consensus 41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~ 97 (286)
.++.+.+.+.+.-..+|+.+...+.++|...+..|..+++-|.++..-+.-.+..++
T Consensus 247 ~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~ 303 (384)
T PF03148_consen 247 AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLE 303 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 355666666666666666666666666666666666666666666655555555543
No 212
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=79.81 E-value=45 Score=29.90 Aligned_cols=50 Identities=4% Similarity=0.200 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
+++=+.+++..+......+..+...-+.+. ..+......+...+......
T Consensus 29 l~q~irem~~~l~~ar~~lA~~~a~~k~~e-------~~~~~~~~~~~~~~~~A~~A 78 (219)
T TIGR02977 29 IRLIIQEMEDTLVEVRTTSARTIADKKELE-------RRVSRLEAQVADWQEKAELA 78 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555444444443333333 34444444444444444333
No 213
>PRK11546 zraP zinc resistance protein; Provisional
Probab=79.67 E-value=38 Score=28.94 Aligned_cols=32 Identities=9% Similarity=-0.037 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH
Q 023185 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQK 78 (286)
Q Consensus 47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~ 78 (286)
...+++-.++...+...+-++|..+..+++.+
T Consensus 49 Qa~~q~I~~~f~~~t~~LRqqL~aKr~ELnAL 80 (143)
T PRK11546 49 QAAWQKIHNDFYAQTSALRQQLVSKRYEYNAL 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445544444445555554444
No 214
>PRK15396 murein lipoprotein; Provisional
Probab=79.65 E-value=12 Score=28.72 Aligned_cols=16 Identities=31% Similarity=0.709 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHhhH
Q 023185 46 ELDQLKSKIRSLESHI 61 (286)
Q Consensus 46 el~elk~ki~eLes~i 61 (286)
+++++.+++..|.+++
T Consensus 26 kvd~LssqV~~L~~kv 41 (78)
T PRK15396 26 KIDQLSSDVQTLNAKV 41 (78)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4444444444443333
No 215
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.61 E-value=20 Score=27.19 Aligned_cols=52 Identities=29% Similarity=0.332 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
-.+++|..+++-+++..+..++.|...+.+|+..++++...+..+-..+..+
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567777788888888888888888888888888888887777665555544
No 216
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=79.56 E-value=23 Score=26.40 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.+..++..+..+..+++.....++.+..+=+.....+...-..+..|..+++.++
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALR 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333333333333333334444444444444444444443
No 217
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=79.46 E-value=89 Score=33.05 Aligned_cols=57 Identities=28% Similarity=0.403 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkk 102 (286)
++.....||.+||.-|.+-.+.|...++.+.+.=-.+..++.+--+|..+|.+++-+
T Consensus 133 qVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLk 189 (861)
T KOG1899|consen 133 QVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLK 189 (861)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHH
Confidence 344444555555555555555555555555444333444444444555555555433
No 218
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=79.43 E-value=53 Score=35.32 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 73 EVVAQKEKAIQDKSERIVSLQKELSS 98 (286)
Q Consensus 73 ~~I~q~e~~i~e~~~eI~~Lq~eI~~ 98 (286)
.-|+.+...+.+-..++..+-..+..
T Consensus 502 ~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 502 NIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33444444444444444444444333
No 219
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=79.21 E-value=52 Score=30.27 Aligned_cols=112 Identities=21% Similarity=0.320 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 78 KEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (286)
Q Consensus 78 ~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~ 157 (286)
++..-.++...+..++.+....+ ..+..++.++..|.......+.+...+..+...++.....+........
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~--------~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~ 74 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQ--------EALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQE 74 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666655555 3333444566666666666666655555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023185 158 AKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS 197 (286)
Q Consensus 158 ~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~ 197 (286)
.....|...+.+....+..+......-+.+...++.++..
T Consensus 75 eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 75 EEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666677777777777777666666666666655543
No 220
>PRK00846 hypothetical protein; Provisional
Probab=79.19 E-value=16 Score=27.92 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 50 lk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
+..+|.+||..+.=...-|..++..+...+..|..+..++..|-.++...
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555544444445555555555555555555555555554444
No 221
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=78.84 E-value=12 Score=29.29 Aligned_cols=16 Identities=31% Similarity=0.650 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhhH
Q 023185 46 ELDQLKSKIRSLESHI 61 (286)
Q Consensus 46 el~elk~ki~eLes~i 61 (286)
+++++.+++..|.+++
T Consensus 25 kvdqLss~V~~L~~kv 40 (85)
T PRK09973 25 KVNQLASNVQTLNAKI 40 (85)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4555555544444444
No 222
>PRK00295 hypothetical protein; Provisional
Probab=78.76 E-value=18 Score=26.83 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 023185 46 ELDQLKSKIRSLESHIDE 63 (286)
Q Consensus 46 el~elk~ki~eLes~i~e 63 (286)
.+.++..++.-.+..+++
T Consensus 6 Ri~~LE~kla~qE~tie~ 23 (68)
T PRK00295 6 RVTELESRQAFQDDTIQA 23 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 223
>PF13166 AAA_13: AAA domain
Probab=78.56 E-value=89 Score=32.55 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023185 81 AIQDKSERIVSLQKELSSLQKK 102 (286)
Q Consensus 81 ~i~e~~~eI~~Lq~eI~~~qkk 102 (286)
...++...+..+...|+.+...
T Consensus 323 ~~~~~~~~~~~l~~~l~~l~~~ 344 (712)
T PF13166_consen 323 DKEELKSAIEALKEELEELKKA 344 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544433
No 224
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=78.15 E-value=29 Score=26.67 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKD 72 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d 72 (286)
.++.....++..|.....+....+....
T Consensus 12 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 39 (123)
T PF02050_consen 12 QELQEAEEQLEQLQQERQEYQEQLSESQ 39 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444444444444444444333333
No 225
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=78.15 E-value=1.1e+02 Score=33.32 Aligned_cols=74 Identities=31% Similarity=0.452 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (286)
Q Consensus 121 Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~E 194 (286)
+...++.+...+...-.....+.........+..........+.....+....+..+...+......+..+...
T Consensus 366 l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~ 439 (908)
T COG0419 366 LEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQ 439 (908)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443222223333333333344444444444444444444444444444444444444444333
No 226
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=78.09 E-value=50 Score=33.44 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023185 80 KAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 80 ~~i~e~~~eI~~Lq~eI~~~q 100 (286)
..+.+++.+|..++.++..++
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~ 91 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLE 91 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544
No 227
>PRK02793 phi X174 lysis protein; Provisional
Probab=77.98 E-value=18 Score=27.08 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=18.1
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (286)
Q Consensus 53 ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~ 97 (286)
+|.+||..+.=...-|..++..+.+-++.|..+..++..|-.++.
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~ 53 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444444444444433
No 228
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=77.91 E-value=63 Score=34.74 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 72 d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
..-|+.+...+.....++..+-.++....
T Consensus 496 ~~ii~~A~~~~~~~~~~~~~li~~L~~~~ 524 (771)
T TIGR01069 496 HFIIEQAKTFYGEFKEEINVLIEKLSALE 524 (771)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44455556666655555555555555444
No 229
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=77.81 E-value=77 Score=31.43 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=30.9
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHH---HHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKD---EVVAQKEK-AIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d---~~I~q~e~-~i~e~~~eI~~Lq~eI~~~q 100 (286)
....++.++...+......+.......+.+.... ........ .+..+..++..+...|...-
T Consensus 240 ~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~ 305 (458)
T COG3206 240 QLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLS 305 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666655555555555444444 22222222 25555555555555555543
No 230
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=77.79 E-value=1.2e+02 Score=33.71 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=16.5
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 55 RSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (286)
Q Consensus 55 ~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~ 97 (286)
-.+++.-..++.++..+.+.|.+.-+.+.+.+.--..|+.+.+
T Consensus 404 leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~e 446 (1195)
T KOG4643|consen 404 LELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELE 446 (1195)
T ss_pred HHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444443333333333333333333
No 231
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=77.69 E-value=51 Score=29.25 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=25.8
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 66 QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 66 ~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
.++..+|.+|..++..+..+...+...+++|.++..-+
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L 116 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL 116 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556677777777777777777777777777776554
No 232
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=77.37 E-value=55 Score=29.51 Aligned_cols=59 Identities=12% Similarity=0.294 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+++..+.-++......+.......+.+......-++.+.-+..++..-.++...++...
T Consensus 8 ~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e 66 (205)
T KOG1003|consen 8 ALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQE 66 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44455555555555555555555555555555555555545444444444444444444
No 233
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=77.13 E-value=10 Score=37.05 Aligned_cols=11 Identities=45% Similarity=0.709 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH
Q 023185 88 RIVSLQKELSS 98 (286)
Q Consensus 88 eI~~Lq~eI~~ 98 (286)
.+..+..+|..
T Consensus 106 ~~~elkkEie~ 116 (370)
T PF02994_consen 106 RIKELKKEIEN 116 (370)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 234
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=77.04 E-value=44 Score=28.20 Aligned_cols=43 Identities=26% Similarity=0.424 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD 84 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e 84 (286)
..+++|++.+..|+.+.+.+.....-+.+....++++.+.+.+
T Consensus 12 ~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 12 AARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKE 54 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455666666666666666655555555555555555544444
No 235
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=76.94 E-value=33 Score=27.69 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+.+..-++.-+-+-+..-.++..+|+.++..|...+.++..+.=.-..|...|..+|
T Consensus 11 raQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ 67 (102)
T PF10205_consen 11 RAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQ 67 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555555555555555555554444444444444444444443
No 236
>PRK00736 hypothetical protein; Provisional
Probab=76.79 E-value=20 Score=26.58 Aligned_cols=27 Identities=11% Similarity=0.277 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 70 GKDEVVAQKEKAIQDKSERIVSLQKEL 96 (286)
Q Consensus 70 ~~d~~I~q~e~~i~e~~~eI~~Lq~eI 96 (286)
.++..+.+-++.|..+..++..|..++
T Consensus 23 ~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 23 ELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444443333
No 237
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=76.77 E-value=41 Score=34.02 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
..++.+|.+++..+...+++++.++..+.-+
T Consensus 74 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l 104 (525)
T TIGR02231 74 AELRKQIRELEAELRDLEDRGDALKALAKFL 104 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 238
>PRK10698 phage shock protein PspA; Provisional
Probab=76.45 E-value=59 Score=29.43 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD 84 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e 84 (286)
.+++=+.+++..+.++......+...-+.+...+.+.+..+..
T Consensus 28 ~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~ 70 (222)
T PRK10698 28 LVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVE 70 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544444444444444444433333
No 239
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=76.42 E-value=73 Score=30.47 Aligned_cols=60 Identities=23% Similarity=0.325 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELK-----GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~-----~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
-++.++.+.+-.+.-+.++++...++ .+...|.++...|.+....|..++.+|++++..+
T Consensus 40 yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 40 YQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554443 2455666666666666666666666666665444
No 240
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=76.41 E-value=67 Score=29.99 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
....+.+++.++...+..++.....+...+-........+.....++..++..+...+
T Consensus 53 ~~~~~~~a~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (327)
T TIGR02971 53 RTAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLE 110 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 3456666666666666665555444333332222333333344444444444444443
No 241
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=76.15 E-value=76 Score=30.51 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 023185 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSER 88 (286)
Q Consensus 48 ~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~e 88 (286)
.++...+..|+.+-..+..++.........++.++..+...
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665555555544444444444444444433
No 242
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=76.13 E-value=57 Score=29.05 Aligned_cols=18 Identities=6% Similarity=0.156 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023185 118 ADELEKQIDNLKKESEKQ 135 (286)
Q Consensus 118 i~eLek~Ie~Lk~eie~~ 135 (286)
+..|...|...+..+..+
T Consensus 111 ~~~L~~~l~~a~~nl~~a 128 (188)
T PF05335_consen 111 LETLKAALKAAQANLANA 128 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444433333333
No 243
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=75.82 E-value=12 Score=38.78 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=17.6
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 57 LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 57 Les~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
++.+..+++.+|.+...+|.++++.|-..+.++..|.++|+.+|
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq 141 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQ 141 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHH
Confidence 33333333333333344444444444444444444444444443
No 244
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=75.43 E-value=74 Score=30.02 Aligned_cols=145 Identities=17% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKG------KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-------------- 103 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~------~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-------------- 103 (286)
.+++.+..++|..|+++..=..-+++. ....-..+.+++.....+|..+|++|..-..-=
T Consensus 142 EQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~ 221 (330)
T KOG2991|consen 142 EQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRT 221 (330)
T ss_pred HHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHH
Q ss_pred hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 104 TLNAAEQVDK--AHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (286)
Q Consensus 104 ~~~~~eqi~k--a~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~l 181 (286)
.+...++++. ++.||.+|+-.+.--+..-++.+..-.+|-.-..++..-+.-.++.+--|+....+-...|+.+++.+
T Consensus 222 L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~ 301 (330)
T KOG2991|consen 222 LQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGL 301 (330)
T ss_pred HHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 023185 182 KVAEEEM 188 (286)
Q Consensus 182 q~~Eeei 188 (286)
...-.-+
T Consensus 302 ~q~sqav 308 (330)
T KOG2991|consen 302 EQVSQAV 308 (330)
T ss_pred HHHHHHh
No 245
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=75.17 E-value=1.3e+02 Score=32.89 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhhhhhCcchhHH-------HHHHHHHhHHhhhhhchhhHH
Q 023185 214 LAVHLLQCQSLIETHWNAHGKPAMDV-------AIQKALEKKAQAGKWVQPHVE 260 (286)
Q Consensus 214 la~~~~~~~~~~~~~w~~hg~p~~~~-------~~~~~~~~~~~~~~~~~ph~~ 260 (286)
....-...+-.....-++++-|.... +++.-++-+..|.||.+--+.
T Consensus 614 ~~~~Ke~~qlk~~~rk~~~~~~~~~~l~~~q~~vl~~kt~eas~~~krlk~a~~ 667 (913)
T KOG0244|consen 614 DRTEKEWNQLKGQERKSEGEHPKLEVLVKKQNYVLQRKTEEASAANKRLKEALC 667 (913)
T ss_pred HHHHHHHHHHhccchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455556666666543 566777888888999554443
No 246
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=74.99 E-value=20 Score=26.15 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 79 EKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 79 e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
+.++..++.++..++.+|..+++++
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666555
No 247
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=74.83 E-value=20 Score=26.58 Aligned_cols=42 Identities=19% Similarity=0.409 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 023185 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV 90 (286)
Q Consensus 49 elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~ 90 (286)
+++.++...+..+++..+.++.++......+..+.....+|.
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~ 44 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLE 44 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544444444444444444444333333333
No 248
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=74.63 E-value=54 Score=28.05 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhhH
Q 023185 46 ELDQLKSKIRSLESHI 61 (286)
Q Consensus 46 el~elk~ki~eLes~i 61 (286)
+++++...++.+++++
T Consensus 7 ~le~l~a~lq~l~~qi 22 (145)
T COG1730 7 ELEELAAQLQILQSQI 22 (145)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 249
>PRK09343 prefoldin subunit beta; Provisional
Probab=74.21 E-value=47 Score=27.19 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 76 AQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 76 ~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
...+..+.....++..++.++..+
T Consensus 17 q~lq~~l~~~~~q~~~le~q~~e~ 40 (121)
T PRK09343 17 QQLQQQLERLLQQKSQIDLELREI 40 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444333
No 250
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=74.16 E-value=25 Score=25.34 Aligned_cols=38 Identities=11% Similarity=0.181 Sum_probs=18.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 62 ~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
+.++.++..+..+++++..++..+..++.....+-...
T Consensus 6 d~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRA 43 (56)
T PF04728_consen 6 DQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARA 43 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444445555555555555555555544444
No 251
>PF13166 AAA_13: AAA domain
Probab=74.07 E-value=1.2e+02 Score=31.67 Aligned_cols=17 Identities=6% Similarity=-0.289 Sum_probs=8.0
Q ss_pred hhhhhCcchhHHHHHHH
Q 023185 228 HWNAHGKPAMDVAIQKA 244 (286)
Q Consensus 228 ~w~~hg~p~~~~~~~~~ 244 (286)
+.-.|.-+++..+....
T Consensus 565 iIlTHn~~F~~~l~~~~ 581 (712)
T PF13166_consen 565 IILTHNLYFFKELKKWF 581 (712)
T ss_pred EEEeCcHHHHHHHHHHh
Confidence 33445555555444444
No 252
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=74.03 E-value=72 Score=29.26 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQ 93 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq 93 (286)
++..+...+..|..+...+......+.......-+.-..+...|..+.
T Consensus 53 ~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~ 100 (264)
T PF06008_consen 53 ELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQ 100 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433333333333333333333
No 253
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=73.92 E-value=83 Score=29.88 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=11.7
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHH
Q 023185 53 KIRSLESHIDEKTQELKGKDEVVAQKEK 80 (286)
Q Consensus 53 ki~eLes~i~e~~~eL~~~d~~I~q~e~ 80 (286)
+|.+|+++.+.+.++-..+.=.|+.++.
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEA 46 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEA 46 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4444444444444443433333333333
No 254
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=73.65 E-value=94 Score=30.39 Aligned_cols=100 Identities=15% Similarity=0.248 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAE 150 (286)
Q Consensus 71 ~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e 150 (286)
=..-+++..+....++.....+...++.+...+ ...+.+...|=.-+..+++.+-.+-.....+..+...+.+.+.
T Consensus 218 WR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i----~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s 293 (359)
T PF10498_consen 218 WRSHLEQMKQHKKSIESALPETKSQLDKLQQDI----SKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQAS 293 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444444444222 1122222233333444444444444444444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 151 KKISDLSAKLEKLQKINDEQKSKI 174 (286)
Q Consensus 151 ~k~~el~~k~~~Lek~~~Eqk~~i 174 (286)
.-+.++...+..+.....+.+..+
T Consensus 294 ~~V~~~t~~L~~IseeLe~vK~em 317 (359)
T PF10498_consen 294 EGVSERTRELAEISEELEQVKQEM 317 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333
No 255
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=73.60 E-value=59 Score=28.01 Aligned_cols=55 Identities=24% Similarity=0.407 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.-.+++-....+..+|++.+.+|..+...+...-..++....++..+..++....
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~ 97 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLK 97 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555444444444443
No 256
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=73.49 E-value=1.1e+02 Score=31.33 Aligned_cols=91 Identities=20% Similarity=0.282 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQV-------DKAHARA 118 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi-------~ka~~Ri 118 (286)
.++-++.+.+-++..+......|+.++..|..+...+. .+...|...|.++..+...+.+..+ ..+.+.+
T Consensus 338 ~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld---~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l 414 (531)
T PF15450_consen 338 ELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLD---LQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHL 414 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666666666666665554432 2223333333333332211111111 1122344
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023185 119 DELEKQIDNLKKESEKQQKEK 139 (286)
Q Consensus 119 ~eLek~Ie~Lk~eie~~~~kk 139 (286)
+++..-|+.|..+|+.+..+-
T Consensus 415 ~~v~eKVd~LpqqI~~vs~Kc 435 (531)
T PF15450_consen 415 KEVQEKVDSLPQQIEEVSDKC 435 (531)
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 445556666666666665554
No 257
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=73.35 E-value=80 Score=29.45 Aligned_cols=12 Identities=33% Similarity=0.315 Sum_probs=6.2
Q ss_pred ccCCchhHHHHH
Q 023185 207 SAWLPPWLAVHL 218 (286)
Q Consensus 207 g~~l~Pwla~~~ 218 (286)
+.|+|.|+-.=.
T Consensus 260 ~~~~~~~~i~ll 271 (301)
T PF14362_consen 260 SALLASLFIFLL 271 (301)
T ss_pred cHHHHHHHHHHH
Confidence 556666644333
No 258
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=73.32 E-value=33 Score=25.07 Aligned_cols=32 Identities=38% Similarity=0.545 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 105 LNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (286)
Q Consensus 105 ~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~ 136 (286)
+..+..+..+..|.++|...|..|+.+++..+
T Consensus 28 ~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 28 LAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445566666777778777887777776653
No 259
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=73.12 E-value=15 Score=35.94 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=0.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 67 ELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 67 eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
++.++...+.++.+++..+...+.....+|...
T Consensus 99 ~l~el~~~~~elkkEie~IKk~q~e~~~~i~~~ 131 (370)
T PF02994_consen 99 ELNELKKRIKELKKEIENIKKNQSEMKLEIENL 131 (370)
T ss_dssp -------------------H-------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444444444444444444444444444
No 260
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=72.97 E-value=37 Score=25.50 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
..+.+...+|.+|-.+-..++..-......|..+-..+.+.+..|..+...++...
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555444444444444444444444444444444444443
No 261
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=72.45 E-value=39 Score=25.44 Aligned_cols=25 Identities=40% Similarity=0.380 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 76 AQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 76 ~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
++++..|...-..|+.|+.+++.++
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLk 31 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELK 31 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 262
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.36 E-value=1.5e+02 Score=32.25 Aligned_cols=53 Identities=25% Similarity=0.256 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (286)
Q Consensus 50 lk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkk 102 (286)
++.-|.++..+++...+....+.-+..+++.++....+.+.++..+.+-++..
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~q 714 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQ 714 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444433
No 263
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=72.13 E-value=90 Score=29.54 Aligned_cols=29 Identities=3% Similarity=0.095 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Q 023185 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQ 77 (286)
Q Consensus 49 elk~ki~eLes~i~e~~~eL~~~d~~I~q 77 (286)
+.+..+.+++..+.....++......+..
T Consensus 83 ~~~~~l~~a~a~l~~a~a~l~~~~~~~~~ 111 (346)
T PRK10476 83 PYELTVAQAQADLALADAQIMTTQRSVDA 111 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666665555555544444433
No 264
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=71.96 E-value=1e+02 Score=31.97 Aligned_cols=26 Identities=8% Similarity=0.167 Sum_probs=16.9
Q ss_pred ccCCchhHHHHHHHHHHHHhhhhhhhCcchhHHHH
Q 023185 207 SAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAI 241 (286)
Q Consensus 207 g~~l~Pwla~~~~~~~~~~~~~w~~hg~p~~~~~~ 241 (286)
|..+-+|+. ..-.|-..+.|.+....
T Consensus 287 g~~i~~~~~---------~~~~~y~~~~p~i~~~~ 312 (555)
T TIGR03545 287 GPEIRKYLQ---------KFLKYYDQAEPLLNKSK 312 (555)
T ss_pred hHHHHHHHH---------HHHHHHHHHhHhhccch
Confidence 555555555 44567778888887763
No 265
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.96 E-value=71 Score=29.55 Aligned_cols=29 Identities=17% Similarity=0.270 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 72 d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.+++++.+++-.++-.+...++++++..+
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~ 169 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQ 169 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344443444444444444444443
No 266
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=71.19 E-value=60 Score=27.11 Aligned_cols=39 Identities=15% Similarity=0.310 Sum_probs=18.2
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 58 es~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
..-...+.++|..+-+.|....+.+. ..|+.+..+++..
T Consensus 42 ~~A~~~v~kql~~vs~~l~~tKkhLs---qRId~vd~klDe~ 80 (126)
T PF07889_consen 42 SDAVASVSKQLEQVSESLSSTKKHLS---QRIDRVDDKLDEQ 80 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHH
Confidence 33344455555555555554443322 4444444444444
No 267
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.13 E-value=27 Score=32.75 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEK 64 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~ 64 (286)
.+.+++++|..++..++++
T Consensus 57 ~~~~l~~Ql~~l~g~i~~L 75 (262)
T COG1729 57 RLTQLEQQLRQLQGKIEEL 75 (262)
T ss_pred ccHHHHHHHHHHHhhHHHH
Confidence 3444444444444444333
No 268
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=70.74 E-value=77 Score=28.17 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=23.0
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 58 es~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.........+.+.++..|.+.......++..|..|+..|-.++
T Consensus 102 k~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~ 144 (190)
T PF05266_consen 102 KDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQ 144 (190)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3333344455555566666555555555555555555555554
No 269
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=70.67 E-value=76 Score=28.04 Aligned_cols=26 Identities=12% Similarity=0.270 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 74 VVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 74 ~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
.|..++.++..+..++..+...++.+
T Consensus 128 ~i~~L~~e~~~L~~~~~~l~~~~e~~ 153 (189)
T PF10211_consen 128 EIEELEEEKEELEKQVQELKNKCEQL 153 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 270
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=70.65 E-value=1e+02 Score=29.56 Aligned_cols=34 Identities=15% Similarity=-0.079 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHHHhhhhhhhCcchhHHHHHHH
Q 023185 211 PPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKA 244 (286)
Q Consensus 211 ~Pwla~~~~~~~~~~~~~w~~hg~p~~~~~~~~~ 244 (286)
..-|+++..|+.+....+-..+.-=+-+.++--|
T Consensus 286 i~~L~~E~~RW~~~~~~l~~~~~~l~GD~llaaa 319 (344)
T PF12777_consen 286 ISGLSGEKERWSEQIEELEEQLKNLVGDSLLAAA 319 (344)
T ss_dssp HHCCHHHHHCCHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcchhhhHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3346666666666555555554444444444333
No 271
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.43 E-value=88 Score=28.70 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (286)
Q Consensus 127 ~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~E 194 (286)
++.++++.+..++.......+.+..-+..++..+.+.+.........+..+......+..+++++..+
T Consensus 36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333444444444444444444455555555555555666665444
No 272
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=70.40 E-value=1.6e+02 Score=31.54 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=30.4
Q ss_pred HHHHH-HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 44 KIELD-QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 44 ~~el~-elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
++++. .++.....++.-.++...++..++.++.-++..+.++...|..+...+..++...
T Consensus 210 r~EM~fKlKE~~~k~~~leeey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~ 270 (786)
T PF05483_consen 210 RQEMHFKLKEDYEKFEDLEEEYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKC 270 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 34443 4444444444444445555555555555555555555555555555555554433
No 273
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=70.18 E-value=50 Score=25.80 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhhHHH
Q 023185 44 KIELDQLKSKIRSLESHIDE 63 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e 63 (286)
..+++.++.++.++.+.+..
T Consensus 30 ss~V~~L~~kvdql~~dv~~ 49 (85)
T PRK09973 30 ASNVQTLNAKIARLEQDMKA 49 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 274
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=70.15 E-value=68 Score=27.51 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 118 ADELEKQIDNLKKESEKQQKEKEALEA 144 (286)
Q Consensus 118 i~eLek~Ie~Lk~eie~~~~kk~eLEa 144 (286)
+...+.++..++.++...+.....|..
T Consensus 22 ~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 22 VDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333444444444444444444443
No 275
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=70.13 E-value=1.3e+02 Score=30.71 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=13.0
Q ss_pred chhhHHhhhhhhccCcCchHHHHHHHH
Q 023185 255 VQPHVETIKAVSSFSYSSIPEILKYIE 281 (286)
Q Consensus 255 ~~ph~~~~~~~~~~~~~~~~~~~~~~~ 281 (286)
.+-|+.|++.-++ -...+|.|++
T Consensus 485 Lee~i~~~~~~i~----El~~~l~~~e 507 (622)
T COG5185 485 LEEDIKNLKHDIN----ELTQILEKLE 507 (622)
T ss_pred HHHHhhhHHhHHH----HHHHHHHHHH
Confidence 4667777766543 3444555554
No 276
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=70.07 E-value=51 Score=25.85 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=18.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 61 i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
+..+++..+.....+..+...+..++..+..+..++...
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~ka 43 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKA 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444544444444444444444444433
No 277
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.94 E-value=39 Score=25.60 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 49 elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.+..+|.+||..+.--.+-|.+++..+.+.+..+...+.++.-|-+++.+.+
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~ 56 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566677777777666666666777777776666666666666666665554
No 278
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=69.60 E-value=1.3e+02 Score=30.29 Aligned_cols=68 Identities=28% Similarity=0.412 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (286)
Q Consensus 121 Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei 188 (286)
+.+..+.++.+-+.+-+.+..++.+..++...+.+++.+...+.....+++........+.=..+.++
T Consensus 181 ~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del 248 (447)
T KOG2751|consen 181 LLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDEL 248 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchH
Confidence 33344444444444444555566666666666666666666666666666666555544443333333
No 279
>PRK10780 periplasmic chaperone; Provisional
Probab=69.59 E-value=71 Score=27.29 Aligned_cols=17 Identities=18% Similarity=0.219 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhhHHH
Q 023185 47 LDQLKSKIRSLESHIDE 63 (286)
Q Consensus 47 l~elk~ki~eLes~i~e 63 (286)
..+.+.-...|+...+.
T Consensus 38 ~p~~k~~~~~le~~~~~ 54 (165)
T PRK10780 38 VPQRTGVSKQLENEFKG 54 (165)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 33333333344444433
No 280
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=69.45 E-value=46 Score=25.04 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023185 84 DKSERIVSLQKELSSLQ 100 (286)
Q Consensus 84 e~~~eI~~Lq~eI~~~q 100 (286)
.++.+|+.+-..|..++
T Consensus 8 ~LE~ki~~aveti~~Lq 24 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQ 24 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 281
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=69.39 E-value=6.9 Score=39.74 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 023185 46 ELDQLKSKIRSLESHIDE 63 (286)
Q Consensus 46 el~elk~ki~eLes~i~e 63 (286)
+|++|++++.+|+.++++
T Consensus 32 kie~L~kql~~Lk~q~~~ 49 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDD 49 (489)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 555555555555555543
No 282
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=69.02 E-value=82 Score=30.56 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (286)
Q Consensus 139 k~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~ 184 (286)
-.+|++..+.-..+.+++......--+....|+..+..+...++..
T Consensus 13 fq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 13 FQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444444444444444444
No 283
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=68.86 E-value=1.7e+02 Score=31.47 Aligned_cols=12 Identities=8% Similarity=0.523 Sum_probs=6.4
Q ss_pred hHHHHHHHHHhh
Q 023185 273 IPEILKYIEELI 284 (286)
Q Consensus 273 ~~~~~~~~~~~~ 284 (286)
++++-+||...+
T Consensus 707 ~~~l~~~ld~a~ 718 (771)
T TIGR01069 707 LDRLEKFLNDAL 718 (771)
T ss_pred HHHHHHHHHHHH
Confidence 345556665543
No 284
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=68.66 E-value=72 Score=29.11 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhhhhHHH
Q 023185 185 EEEMMRAKFEATSRSKEL 202 (286)
Q Consensus 185 Eeei~kle~Ea~~~a~ql 202 (286)
..+++++-.+...+..++
T Consensus 192 ~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 192 QDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 285
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=68.65 E-value=2e+02 Score=32.12 Aligned_cols=36 Identities=19% Similarity=0.127 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 155 DLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 155 el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
.+...++...+.+.-...+|+...+.-+.-+..++.
T Consensus 536 ~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~ 571 (1041)
T KOG0243|consen 536 KLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDD 571 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHH
Confidence 334444444444444444444444443333333333
No 286
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=68.63 E-value=46 Score=24.78 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023185 111 VDKAHARADELEKQIDNLKKES 132 (286)
Q Consensus 111 i~ka~~Ri~eLek~Ie~Lk~ei 132 (286)
+..|..++.+|+..++.+++++
T Consensus 42 l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 42 LGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443
No 287
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=68.63 E-value=1.1e+02 Score=29.19 Aligned_cols=20 Identities=5% Similarity=0.134 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023185 171 KSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 171 k~~i~~lE~~lq~~Eeei~k 190 (286)
...+..++.+.+.++..+..
T Consensus 277 ~~~~~~L~re~~~a~~~y~~ 296 (362)
T TIGR01010 277 TADYQRLVLQNELAQQQLKA 296 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555444444
No 288
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=68.56 E-value=81 Score=29.23 Aligned_cols=43 Identities=16% Similarity=0.269 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKI 166 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~ 166 (286)
++.-+..+.+.-+.+..+||.+.+.....+..+...++.|+..
T Consensus 80 iLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 80 ILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555544444444444444443
No 289
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=68.34 E-value=23 Score=28.38 Aligned_cols=49 Identities=14% Similarity=0.326 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHH--HHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEK--TQELKGKDEVVAQKEKAIQDKSERIVSL 92 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~--~~eL~~~d~~I~q~e~~i~e~~~eI~~L 92 (286)
...++....++..+|..++.+ .+++..+...|.+....+..++..+..+
T Consensus 41 ~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 41 EERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 334444445555555544444 4444444444444444444444444443
No 290
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=68.20 E-value=2e+02 Score=32.06 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 023185 175 RKTERALKVAEEEMMR 190 (286)
Q Consensus 175 ~~lE~~lq~~Eeei~k 190 (286)
+....++..+-..+.+
T Consensus 542 ~~s~~d~s~l~~kld~ 557 (1041)
T KOG0243|consen 542 EESQDDLSSLFEKLDR 557 (1041)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3333333333333333
No 291
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=68.13 E-value=24 Score=25.42 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 72 DEVVAQKEKAIQDKSERIVSLQKE 95 (286)
Q Consensus 72 d~~I~q~e~~i~e~~~eI~~Lq~e 95 (286)
+..|+..++++.+++..|..++..
T Consensus 13 ~~~i~tvk~en~~i~~~ve~i~en 36 (55)
T PF05377_consen 13 ESSINTVKKENEEISESVEKIEEN 36 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333333
No 292
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=67.67 E-value=21 Score=30.04 Aligned_cols=42 Identities=21% Similarity=0.390 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQD 84 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e 84 (286)
+..++++.++.+...+.....+..+++.+|.+|..+...+.+
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~ 119 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDE 119 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444444444444444433333
No 293
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=67.50 E-value=1.8e+02 Score=31.12 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023185 140 EALEARAIEAEKKISDLSAKLEK 162 (286)
Q Consensus 140 ~eLEa~~~e~e~k~~el~~k~~~ 162 (286)
.+|++-+.++..+-.++..++..
T Consensus 548 neles~~eel~~k~~Ev~~kl~k 570 (786)
T PF05483_consen 548 NELESVKEELKQKGEEVKCKLDK 570 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444444444444433
No 294
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=67.48 E-value=1.1e+02 Score=28.67 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023185 165 KINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (286)
Q Consensus 165 k~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql 202 (286)
-.+....+.+......+...+.+|..+.++...+..+.
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555666677777778888888888888888776655
No 295
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=67.39 E-value=79 Score=27.02 Aligned_cols=11 Identities=45% Similarity=0.480 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 023185 125 IDNLKKESEKQ 135 (286)
Q Consensus 125 Ie~Lk~eie~~ 135 (286)
|+.|++.++.+
T Consensus 96 ie~l~k~~~~l 106 (145)
T COG1730 96 IEFLKKRIEEL 106 (145)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 296
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=67.18 E-value=37 Score=34.45 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEKQIDNLKKESEKQQKEKEAL 142 (286)
Q Consensus 116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eL 142 (286)
.+..+|+++|+.++.+.+.+......+
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dl 102 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDD 102 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 456666666666654444333333333
No 297
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=66.75 E-value=84 Score=31.93 Aligned_cols=30 Identities=13% Similarity=0.219 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 70 ~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
.-...|..+-..+++...++..+..+=+.+
T Consensus 56 TP~DTlrTlva~~k~~r~~~~~l~~~N~~l 85 (472)
T TIGR03752 56 TPADTLRTLVAEVKELRKRLAKLISENEAL 85 (472)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555554443333
No 298
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=66.74 E-value=92 Score=30.88 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=24.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 65 ~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
..+|-.+|.+-.++..+++.+..+.+.+..+|...
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~ 63 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKA 63 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777777553
No 299
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=66.60 E-value=1.3e+02 Score=29.35 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARA 146 (286)
Q Consensus 69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~ 146 (286)
.+.|+.+.+.-..+.+.+.+-..|+..=..+.+.+ ...+.-..++..+..-|+..|..++.+-....-..+.+....
T Consensus 81 ~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL-~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~ 157 (401)
T PF06785_consen 81 TEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQL-FHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQEC 157 (401)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444444444444444444444444433333333 222334445445555555555544444444433333333333
No 300
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=66.54 E-value=1.6e+02 Score=30.09 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHh---hhhccCCchhHHHH
Q 023185 175 RKTERALKVAEEEMMRAKFEATSRSKELT---EVHSAWLPPWLAVH 217 (286)
Q Consensus 175 ~~lE~~lq~~Eeei~kle~Ea~~~a~ql~---~~~g~~l~Pwla~~ 217 (286)
..+...+..+.+.-.++..++..+.+-|. +.-|.|-=--|..-
T Consensus 168 ~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerI 213 (475)
T PRK10361 168 HTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRV 213 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHH
Confidence 44455555555555566666666666663 23377744334333
No 301
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=66.00 E-value=53 Score=32.63 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=24.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 65 ~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
..+|..+|.+-.++..+++.+..+.+.+..+|...
T Consensus 27 vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~ 61 (425)
T PRK05431 27 VDELLELDEERRELQTELEELQAERNALSKEIGQA 61 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777777777777777553
No 302
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=65.89 E-value=1e+02 Score=27.66 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=26.8
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 58 es~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
..-+.++...|......+...-..-...+.++..++..+...+..-
T Consensus 30 ~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A 75 (219)
T TIGR02977 30 RLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKA 75 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555566666666666666666666666666665443
No 303
>PF15294 Leu_zip: Leucine zipper
Probab=65.78 E-value=1.2e+02 Score=28.65 Aligned_cols=20 Identities=10% Similarity=0.378 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023185 160 LEKLQKINDEQKSKIRKTER 179 (286)
Q Consensus 160 ~~~Lek~~~Eqk~~i~~lE~ 179 (286)
...|..+....+.+|..+.+
T Consensus 255 y~NMk~~ltkKn~QiKeLRk 274 (278)
T PF15294_consen 255 YRNMKEILTKKNEQIKELRK 274 (278)
T ss_pred HHHhHHHHHhccHHHHHHHH
Confidence 33444444444444444443
No 304
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=65.48 E-value=72 Score=25.82 Aligned_cols=31 Identities=39% Similarity=0.530 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEKQIDNLKKESEKQQKEKEALEARA 146 (286)
Q Consensus 116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~ 146 (286)
.|+..|++.++.+.+++.........++...
T Consensus 94 ~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 94 KKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666655555544433
No 305
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=65.04 E-value=1.7e+02 Score=30.08 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (286)
Q Consensus 139 k~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE 178 (286)
.++|+.-+..=+..+..+..-+..|.+....|...|+.+.
T Consensus 475 qDEL~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 475 QDELETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555556666667777777777777777777765
No 306
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=64.87 E-value=43 Score=24.34 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELK 69 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~ 69 (286)
+++.+..+..++.+.+........+++
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666665555554444433
No 307
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=64.39 E-value=1.1e+02 Score=27.62 Aligned_cols=50 Identities=16% Similarity=0.330 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKE 95 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~e 95 (286)
.+.-++.+|..++-..+.....+.....++.++++.-.+....+..+.+.
T Consensus 5 ~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr 54 (205)
T KOG1003|consen 5 DVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENR 54 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444433
No 308
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=64.30 E-value=1.2e+02 Score=31.44 Aligned_cols=16 Identities=6% Similarity=-0.265 Sum_probs=8.8
Q ss_pred HHhhhhhhhCcchhHH
Q 023185 224 LIETHWNAHGKPAMDV 239 (286)
Q Consensus 224 ~~~~~w~~hg~p~~~~ 239 (286)
..-..|.+++-+.++.
T Consensus 288 ~~i~~~~~~~~~~y~~ 303 (555)
T TIGR03545 288 PEIRKYLQKFLKYYDQ 303 (555)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344566666665555
No 309
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=64.09 E-value=53 Score=25.09 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023185 78 KEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 78 ~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+.+.+......+..+++.++..+
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I~ 62 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEIQ 62 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555443
No 310
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=63.97 E-value=1.1e+02 Score=28.25 Aligned_cols=9 Identities=11% Similarity=0.239 Sum_probs=3.8
Q ss_pred hhhCcchhH
Q 023185 230 NAHGKPAMD 238 (286)
Q Consensus 230 ~~hg~p~~~ 238 (286)
..|.+|-+.
T Consensus 237 ~~~~e~e~~ 245 (290)
T COG4026 237 YAEDEKEVE 245 (290)
T ss_pred ecccccccc
Confidence 344444443
No 311
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=63.54 E-value=52 Score=26.55 Aligned_cols=27 Identities=7% Similarity=0.306 Sum_probs=10.3
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHH
Q 023185 52 SKIRSLESHIDEKTQELKGKDEVVAQK 78 (286)
Q Consensus 52 ~ki~eLes~i~e~~~eL~~~d~~I~q~ 78 (286)
.+...++.+++.+...+..++..|.+.
T Consensus 6 ~q~~ql~~~i~~l~~~i~~l~~~i~e~ 32 (126)
T TIGR00293 6 AELQILQQQVESLQAQIAALRALIAEL 32 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433333333333333333
No 312
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=63.49 E-value=1.7e+02 Score=29.42 Aligned_cols=45 Identities=31% Similarity=0.299 Sum_probs=32.0
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 56 SLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 56 eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.+-+...+..+.+-.++.++.+.++....++.+...+..+-....
T Consensus 3 ~~~s~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~ 47 (459)
T KOG0288|consen 3 PLYSQKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIK 47 (459)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777778888888888777777777777766665
No 313
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=63.42 E-value=76 Score=25.38 Aligned_cols=55 Identities=9% Similarity=0.235 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGK--DEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~--d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
..++.+..++......++.+..+++.+ ...+..++..+.+++.++..+...|+..
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455666666666666555555555555 5555555555555555555555555444
No 314
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=63.20 E-value=1.2e+02 Score=27.67 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTER 179 (286)
Q Consensus 142 LEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~ 179 (286)
|+.........+..+...+..|.........+|.+++.
T Consensus 97 le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 97 LEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444333333333333
No 315
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=62.72 E-value=1e+02 Score=26.65 Aligned_cols=14 Identities=14% Similarity=0.271 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 023185 82 IQDKSERIVSLQKE 95 (286)
Q Consensus 82 i~e~~~eI~~Lq~e 95 (286)
.+++..+-+.|-+.
T Consensus 121 ~nEknkeK~~Lv~~ 134 (159)
T PF04949_consen 121 FNEKNKEKAQLVTR 134 (159)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 316
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=62.71 E-value=3.8 Score=33.26 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQ 93 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq 93 (286)
+..=|+.+...+..|..++..+..++..+...+.........+...+...+
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq 73 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQ 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhh
Confidence 334455555555555555544444444444444444444333333333333
No 317
>PRK00106 hypothetical protein; Provisional
Probab=62.64 E-value=1.9e+02 Score=29.84 Aligned_cols=138 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH-HHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKI-RSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (286)
Q Consensus 44 ~~el~elk~ki-~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLe 122 (286)
+....+++.+. .++.....++.++++.-...|.+.+..+..++..+..-...++.-+ .++...+
T Consensus 67 ke~~ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~rL~qREE~LekRee~LekrE---------------~eLe~ke 131 (535)
T PRK00106 67 KALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLTERATSLDRKDENLSSKE---------------KTLESKE 131 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023185 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK---LQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS 199 (286)
Q Consensus 123 k~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~---Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a 199 (286)
+.++..+++++....+...+.......-.+++.+...-+. ++....+.......+ +.....++..++...+
T Consensus 132 keLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~~~~~~~~~------i~~~e~~a~~~a~~~a 205 (535)
T PRK00106 132 QSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENKLTHEIATR------IREAEREVKDRSDKMA 205 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 023185 200 KEL 202 (286)
Q Consensus 200 ~ql 202 (286)
+.+
T Consensus 206 ~~i 208 (535)
T PRK00106 206 KDL 208 (535)
T ss_pred HHH
No 318
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=62.33 E-value=1.2e+02 Score=29.49 Aligned_cols=13 Identities=23% Similarity=0.593 Sum_probs=8.3
Q ss_pred HhhhhhchhhHHh
Q 023185 249 AQAGKWVQPHVET 261 (286)
Q Consensus 249 ~~~~~~~~ph~~~ 261 (286)
..|..|..=|+++
T Consensus 301 ~~A~~wl~~yFd~ 313 (372)
T PF04375_consen 301 QRAQQWLNRYFDT 313 (372)
T ss_pred HHHHHHHHHHcCC
Confidence 3567777777653
No 319
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=62.13 E-value=1.4e+02 Score=27.85 Aligned_cols=44 Identities=9% Similarity=0.167 Sum_probs=22.1
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i 82 (286)
|...+..++++++..+..++.++..+...+..+...+...+..+
T Consensus 74 d~~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 117 (334)
T TIGR00998 74 DPTNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKL 117 (334)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666555544444443333333333333
No 320
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=62.13 E-value=1.9e+02 Score=29.60 Aligned_cols=39 Identities=8% Similarity=0.120 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA 149 (286)
Q Consensus 111 i~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~ 149 (286)
+...+.|+..+..+..++...++.+......++.+...+
T Consensus 303 L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l 341 (563)
T TIGR00634 303 LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQL 341 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 444445666666655555555555555555555554444
No 321
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.70 E-value=1.9e+02 Score=29.41 Aligned_cols=9 Identities=11% Similarity=0.357 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 023185 47 LDQLKSKIR 55 (286)
Q Consensus 47 l~elk~ki~ 55 (286)
++++..+..
T Consensus 233 ~eel~eq~e 241 (521)
T KOG1937|consen 233 VEELTEQNE 241 (521)
T ss_pred HHHHHhhhh
Confidence 344433333
No 322
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=61.67 E-value=2.2e+02 Score=30.18 Aligned_cols=44 Identities=7% Similarity=0.209 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 143 EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 143 Ea~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
..+.+.+...++.++..+..+- ..+..+..++++.+..+..+..
T Consensus 345 ~~~~~~L~~~~~~l~~~~~~~p----~~e~~~~~L~R~~~~~~~lY~~ 388 (726)
T PRK09841 345 LEKRQTLEQERKRLNKRVSAMP----STQQEVLRLSRDVEAGRAVYLQ 388 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444433332 3444555555555555555554
No 323
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=61.02 E-value=1.1e+02 Score=26.55 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHhh
Q 023185 3 ASKLVIFSLFFALILTA 19 (286)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (286)
|-+||+++++|++.|.+
T Consensus 6 i~klff~~~lfvmaCka 22 (160)
T PF03978_consen 6 IVKLFFISMLFVMACKA 22 (160)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788777775554544
No 324
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=60.91 E-value=1.6e+02 Score=28.15 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+-+...+.+.+..+.++..+|..|.+++...+
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44556666777777777777777777776665
No 325
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=60.84 E-value=75 Score=24.50 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 75 VAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 75 I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+++++..|...-+.|.-|+-+|+.++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELK 31 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666777777776665
No 326
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=60.67 E-value=1.3e+02 Score=27.06 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNL 128 (286)
Q Consensus 49 elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~L 128 (286)
.|..+...++..|..-..+...+...++-....-......-.....+...+. .+...++.+++.|..+|..|
T Consensus 109 ~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~--------~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 109 QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALE--------AERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333333333333333333333332 22223334555555555555
Q ss_pred HHH
Q 023185 129 KKE 131 (286)
Q Consensus 129 k~e 131 (286)
+.+
T Consensus 181 q~q 183 (192)
T PF11180_consen 181 QRQ 183 (192)
T ss_pred HHH
Confidence 443
No 327
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=60.57 E-value=2.8 Score=44.19 Aligned_cols=12 Identities=33% Similarity=0.581 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhh
Q 023185 49 QLKSKIRSLESH 60 (286)
Q Consensus 49 elk~ki~eLes~ 60 (286)
.++.++..|+.+
T Consensus 65 ~~k~~l~~Le~e 76 (722)
T PF05557_consen 65 ELKAQLNQLEYE 76 (722)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 328
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=59.73 E-value=1.8e+02 Score=28.44 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=19.6
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQ 66 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~ 66 (286)
+...+..++.+++..+..++.+++.+..
T Consensus 90 ~~~~~~~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 90 FQPELRERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888888888777766554
No 329
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=59.49 E-value=1e+02 Score=25.57 Aligned_cols=11 Identities=18% Similarity=0.226 Sum_probs=4.0
Q ss_pred hHHHHHHhhhh
Q 023185 60 HIDEKTQELKG 70 (286)
Q Consensus 60 ~i~e~~~eL~~ 70 (286)
++..+..+|++
T Consensus 28 qk~~le~qL~E 38 (119)
T COG1382 28 QKQQLEAQLKE 38 (119)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 330
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=59.33 E-value=1.4e+02 Score=27.04 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 023185 168 DEQKSKIRKTERALKVAEEEMMRAKFEATSRSK 200 (286)
Q Consensus 168 ~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ 200 (286)
......+..+...+...+..+..++.....+.+
T Consensus 157 ~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~k 189 (207)
T PF05010_consen 157 SKHQAELLALQASLKKEEMKVQSLEESLEQKTK 189 (207)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 331
>PLN02678 seryl-tRNA synthetase
Probab=58.64 E-value=87 Score=31.56 Aligned_cols=35 Identities=20% Similarity=0.269 Sum_probs=25.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 65 ~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
..+|..+|.+-.++..+++.+..+.+.+..+|...
T Consensus 32 id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~ 66 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKL 66 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777777777777553
No 332
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=58.47 E-value=96 Score=24.96 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEKQIDNLKKESEKQQKEKEA 141 (286)
Q Consensus 116 ~Ri~eLek~Ie~Lk~eie~~~~kk~e 141 (286)
.|+..+.+.++.+.+.+...+.....
T Consensus 93 ~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 93 KRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555444444444443333
No 333
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=58.45 E-value=89 Score=24.59 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (286)
Q Consensus 126 e~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~ 160 (286)
..|...++.+......++.....+.+.+.++...+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 334
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=58.39 E-value=2.5e+02 Score=29.77 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=15.5
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023185 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (286)
Q Consensus 51 k~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~ 85 (286)
+.+.....+..+=+.+++..+..++...+..++.-
T Consensus 259 ~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~f 293 (726)
T PRK09841 259 ARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVY 293 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444443
No 335
>PHA01750 hypothetical protein
Probab=57.74 E-value=18 Score=27.00 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEV 74 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~ 74 (286)
++++++.++.++.++...++++.+++.++...
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 35666666666666665555554444444333
No 336
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=57.66 E-value=85 Score=24.07 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (286)
Q Consensus 122 ek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~ 196 (286)
..+++.++.+.+.+......+.....+.+.++...-+.++.+...+-+.+..-.++. +..|++|.++..+..
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK---~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK---QQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 445777777777777766666666666666655555555555554444444444333 445677777665554
No 337
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=57.30 E-value=77 Score=27.59 Aligned_cols=6 Identities=50% Similarity=0.667 Sum_probs=2.1
Q ss_pred HHHHHH
Q 023185 121 LEKQID 126 (286)
Q Consensus 121 Lek~Ie 126 (286)
|+++.+
T Consensus 180 LkkQ~~ 185 (192)
T PF05529_consen 180 LKKQSE 185 (192)
T ss_pred HHHHHH
Confidence 333333
No 338
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=57.10 E-value=84 Score=23.88 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
+-+++++.-+..++.+.+.+..+....-.+.+..-..++.+...++.+-..+..+
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~ 80 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADL 80 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4456666666666666666666666666666655555555555555555554444
No 339
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=57.04 E-value=1.9e+02 Score=28.03 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
..+.+++...-.+|+..-....+.+.++..-.+..-+.|..-...+..+...+...++
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~ 60 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKK 60 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3556666777677766666666666666666666666666666666666666655543
No 340
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=56.72 E-value=91 Score=24.97 Aligned_cols=10 Identities=0% Similarity=0.328 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 023185 49 QLKSKIRSLE 58 (286)
Q Consensus 49 elk~ki~eLe 58 (286)
+++.++.+++
T Consensus 31 ~l~~q~~~~~ 40 (105)
T PRK00888 31 RVNDQVAAQQ 40 (105)
T ss_pred HHHHHHHHHH
Confidence 3344433333
No 341
>PRK11519 tyrosine kinase; Provisional
Probab=55.70 E-value=2.8e+02 Score=29.42 Aligned_cols=12 Identities=8% Similarity=0.437 Sum_probs=7.0
Q ss_pred HHhhhhhhccCc
Q 023185 259 VETIKAVSSFSY 270 (286)
Q Consensus 259 ~~~~~~~~~~~~ 270 (286)
+..+++.+.|+.
T Consensus 510 ~r~lrt~l~~~~ 521 (719)
T PRK11519 510 IRSLRTSLHFAM 521 (719)
T ss_pred HHHHHHHhhhhc
Confidence 455666666643
No 342
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.40 E-value=81 Score=30.78 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~ 98 (286)
.+++.+...++.+....+++..-+..++..+..+++++..++.+|+-|...+..
T Consensus 225 eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 225 EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444433
No 343
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=55.32 E-value=1.1e+02 Score=24.44 Aligned_cols=19 Identities=53% Similarity=0.707 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQ 135 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~ 135 (286)
|+..+++.++.+.+.+...
T Consensus 95 r~~~l~~~~~~l~~~~~~~ 113 (129)
T cd00890 95 RLETLEKQIEKLEKQLEKL 113 (129)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 344
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=55.19 E-value=2e+02 Score=27.51 Aligned_cols=46 Identities=17% Similarity=0.282 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSER 88 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~e 88 (286)
+--=|+|..=-|..|..+..+....|...|.+|.++..++..+...
T Consensus 59 YLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrED 104 (305)
T PF15290_consen 59 YLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMRED 104 (305)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3334566677788888888888888888888888888777776654
No 345
>PF13514 AAA_27: AAA domain
Probab=55.03 E-value=3.4e+02 Score=30.29 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=8.6
Q ss_pred HHHHHhhhhhhhCcchhHH
Q 023185 221 CQSLIETHWNAHGKPAMDV 239 (286)
Q Consensus 221 ~~~~~~~~w~~hg~p~~~~ 239 (286)
+......|-..|--|++..
T Consensus 966 L~~a~~~~r~~~~p~vl~~ 984 (1111)
T PF13514_consen 966 LEEAIERYREERQPPVLAR 984 (1111)
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 3444444444454444443
No 346
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.52 E-value=96 Score=28.90 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhh
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKG 70 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~ 70 (286)
-+..++..++.+...|.+++...++.+++
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s 82 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDS 82 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555444333333
No 347
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=53.96 E-value=2.5e+02 Score=28.34 Aligned_cols=69 Identities=14% Similarity=0.259 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle 192 (286)
++..+.++-....-...+++.++.++..+...+-..........-+-+..++.++......+.+++++.
T Consensus 198 ~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ 266 (447)
T KOG2751|consen 198 QLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLR 266 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555677777777777777777777766766667777777777777777766666653
No 348
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=53.91 E-value=2.1e+02 Score=27.41 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDE 73 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~ 73 (286)
-+.+++..+.+++.+-....=.-..+|.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDN 105 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDN 105 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 4556677777776665444433333333
No 349
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=53.84 E-value=1.4e+02 Score=27.30 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 129 KKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (286)
Q Consensus 129 k~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~ 184 (286)
..+....+.+...|+.+.++..+.++.++.....+.+..+.....++.+-.+-+.+
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~L 205 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKL 205 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33444444444444444444444455555555555555555555555444433333
No 350
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.52 E-value=3.4e+02 Score=29.76 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQK 94 (286)
Q Consensus 50 lk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~ 94 (286)
+..++.++.....++..+..++++++......+..+..+.+.|..
T Consensus 669 lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~ 713 (970)
T KOG0946|consen 669 LDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKN 713 (970)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 351
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=53.49 E-value=2.2e+02 Score=27.69 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHhhH
Q 023185 44 KIELDQLKSKIRSLESHI 61 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i 61 (286)
-..+-++..+|..||+.+
T Consensus 208 la~~a~LE~RL~~LE~~l 225 (388)
T PF04912_consen 208 LARAADLEKRLARLESAL 225 (388)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455666666666666554
No 352
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=52.27 E-value=1e+02 Score=23.53 Aligned_cols=29 Identities=34% Similarity=0.408 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 127 NLKKESEKQQKEKEALEARAIEAEKKISD 155 (286)
Q Consensus 127 ~Lk~eie~~~~kk~eLEa~~~e~e~k~~e 155 (286)
.|...++.+......|+.....+..++.+
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~ 94 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKE 94 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 353
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=52.14 E-value=2.7e+02 Score=28.19 Aligned_cols=16 Identities=38% Similarity=0.449 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLE 58 (286)
Q Consensus 43 l~~el~elk~ki~eLe 58 (286)
+-.++++++.+.-.|+
T Consensus 134 Lsrkl~qLr~ek~~lE 149 (552)
T KOG2129|consen 134 LSRKLKQLRHEKLPLE 149 (552)
T ss_pred hhHHHHHHHhhhccHH
Confidence 3345556654443333
No 354
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=52.05 E-value=2e+02 Score=26.73 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+.++..++.++..+...+....-.....+..+...+..+......+...+..+...+
T Consensus 61 ~a~l~~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 117 (327)
T TIGR02971 61 RTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRLEAELETAQ 117 (327)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555433322222223344555555555555555555555555554
No 355
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=52.05 E-value=1.1e+02 Score=23.86 Aligned_cols=66 Identities=35% Similarity=0.385 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK---LEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 125 Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k---~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
|-.+-.+......+.+.|.++++.+.+.+..+... .+.+.....+.+..+..++..+..++.++..
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555555554442 3444455555555555555555555555444
No 356
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=51.74 E-value=43 Score=32.49 Aligned_cols=67 Identities=21% Similarity=0.365 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHhhhhccCCchhHHH
Q 023185 150 EKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRS-KELTEVHSAWLPPWLAV 216 (286)
Q Consensus 150 e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a-~ql~~~~g~~l~Pwla~ 216 (286)
..++.+|...+-.|+..+=........-+.+++.+-+.+....+.+..+. ..-..++|.|-|||+.+
T Consensus 236 keKiKELhqrI~kLE~EKyDLekR~eRQeYDlkeL~eRqrq~~r~~~~k~g~d~~~v~g~~~p~k~~~ 303 (361)
T KOG3634|consen 236 KEKIKELHQRICKLETEKYDLEKRHERQEYDLKELNERQRQVQRNSALKKGLDPEEVTGRWKPPKVQI 303 (361)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhhccHHHHHHHHHHHHHHHHhhcCCChhhhcCCCCCceeeh
Confidence 33444444444444444444444444444444444444444433333221 12245779999999653
No 357
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=51.42 E-value=2e+02 Score=26.63 Aligned_cols=49 Identities=10% Similarity=0.161 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (286)
Q Consensus 48 ~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI 96 (286)
.+++..+...+..+.....++..++..+.+.+..+...+..+...+.++
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l 124 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKL 124 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666665555555555544444444444444444333333
No 358
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=51.19 E-value=2.3e+02 Score=27.14 Aligned_cols=56 Identities=27% Similarity=0.471 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+...+++++.++..+-.. ++...+......|......|.++..+|..++..|...+
T Consensus 53 fA~~ld~~~~kl~~Ms~~--ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~ 108 (301)
T PF06120_consen 53 FADSLDELKEKLKEMSST--QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQ 108 (301)
T ss_pred HHHhhHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777665332 24444555566666666666666666666666665443
No 359
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=50.77 E-value=1.5e+02 Score=25.00 Aligned_cols=8 Identities=0% Similarity=0.206 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 023185 50 LKSKIRSL 57 (286)
Q Consensus 50 lk~ki~eL 57 (286)
++..+...
T Consensus 24 l~~~~~~a 31 (135)
T TIGR03495 24 ARADLERA 31 (135)
T ss_pred HHHHHHHH
Confidence 33333333
No 360
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=50.38 E-value=1.3e+02 Score=29.89 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHhhhhhcccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHhhHHHHHHh----hhhHHHHHHH
Q 023185 2 AASKLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQE----LKGKDEVVAQ 77 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~elk~ki~eLes~i~e~~~e----L~~~d~~I~q 77 (286)
+-..+.++++++++ +.+++.--.-.++..+...+...|+.++.....+ ...++..+.+
T Consensus 35 ~g~~l~~~aili~l------------------a~g~g~y~~~~qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~ 96 (390)
T PRK10920 35 TGLVLSAVAIAIAL------------------AAGAGLYYHGKQQAQNQTATNDALANQLTALQKAQESQKQELEGILKQ 96 (390)
T ss_pred ccHHHHHHHHHHHH------------------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 78 KEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 78 ~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
....+...+..+..++..+..++..+
T Consensus 97 ~~~~l~~~e~~~~~l~~q~~~Lq~~~ 122 (390)
T PRK10920 97 QAKALDQANRQQAALAKQLDELQQKV 122 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 361
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=49.94 E-value=3.1e+02 Score=28.29 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.+++++-.++....++.--.-.+-..+-..++..++....+..++..+.+.|..+|
T Consensus 420 ~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~Lq 475 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQ 475 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333333333334444444443344444444444444443
No 362
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=49.33 E-value=1.2e+02 Score=23.27 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=19.2
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 66 QELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 66 ~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
....++..++++++...+....++.....+-...
T Consensus 32 s~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarA 65 (78)
T COG4238 32 SDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARA 65 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Confidence 3335556666666666666666665555554443
No 363
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=49.25 E-value=1e+02 Score=22.61 Aligned_cols=57 Identities=16% Similarity=0.334 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESE 133 (286)
Q Consensus 70 ~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie 133 (286)
+....|..++..|.+...-|..++-++..+- ...+ ...+.+++..+..+..++.++.
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p----~s~r---~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLP----PSER---NQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-----HHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----HHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555555555555555555544332 1111 2233577777777777776654
No 364
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=49.23 E-value=2.8e+02 Score=27.50 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=24.6
Q ss_pred CchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023185 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (286)
Q Consensus 40 ~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~ 85 (286)
..+++.+-++++++|.=-.+++......-+.+...+.+-.+....+
T Consensus 141 t~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqi 186 (561)
T KOG1103|consen 141 TAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQI 186 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777765444444444444444444444444444433
No 365
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=49.21 E-value=2.4e+02 Score=26.70 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 79 EKAIQDKSERIVSLQKELSSLQKKE--TLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALE 143 (286)
Q Consensus 79 e~~i~e~~~eI~~Lq~eI~~~qkkl--~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLE 143 (286)
-..|.++.+.+.-|-.+|.+++... .++..+..+| .||..+..|...+..+..+..+...|+
T Consensus 95 dddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK---~IR~~E~sl~p~R~~r~~l~d~I~kLk 158 (271)
T PF13805_consen 95 DDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLK---SIRNREESLQPSRDRRRKLQDEIAKLK 158 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHhHHHHHHHHHHH
Confidence 3467788888888888888777554 4555566666 677777777766666666655555443
No 366
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=48.54 E-value=3.5e+02 Score=28.50 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.++++..++.++..+..+.+....+.+. .+.+.+..+...+..++.|+.++..++
T Consensus 344 ~~q~~~~~~~~l~~~~~~~~~~~~e~~~---~~~~~~~~~~~~~~~l~~le~~l~~~~ 398 (656)
T PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELRV---KTEQAQASVHQLDSQFAQLDGKLADAQ 398 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777776666665533 234444455555555555555555544
No 367
>PLN02320 seryl-tRNA synthetase
Probab=48.50 E-value=1.8e+02 Score=29.81 Aligned_cols=34 Identities=6% Similarity=0.022 Sum_probs=19.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (286)
Q Consensus 65 ~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~ 98 (286)
..++..+|....++..+++.+..+.+.+-.+|..
T Consensus 92 vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 92 LELVLELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666666666666666665555555543
No 368
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=48.49 E-value=19 Score=36.93 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=49.2
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 36 DAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 36 ~~~~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
-|+|-...+.-++++..+++.+ ++.++.+...++.+.+++++.|+.+..++++.-.+|=+.+.+|
T Consensus 362 ~AAD~kSTQ~aid~it~kvN~i---iek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaEL 426 (550)
T PF00509_consen 362 YAADLKSTQKAIDQITKKVNSI---IEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAEL 426 (550)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHH---HHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHH---HHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHH
Confidence 4456666777788888876555 5666778888888888888888888888888888887777776
No 369
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=48.42 E-value=1.4e+02 Score=23.75 Aligned_cols=19 Identities=42% Similarity=0.424 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023185 127 NLKKESEKQQKEKEALEAR 145 (286)
Q Consensus 127 ~Lk~eie~~~~kk~eLEa~ 145 (286)
-+.+.++.+......++..
T Consensus 91 ~l~~r~~~l~~~~~~l~~~ 109 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQ 109 (129)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 370
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=48.03 E-value=2e+02 Score=25.58 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVA 184 (286)
Q Consensus 116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~ 184 (286)
.-...-..++..|+.-+..-+......+.-.......+.+-...+......+.....++.....++..+
T Consensus 102 ~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 102 RAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445556666666666665555555555555555555555555555554444444444444444443
No 371
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=47.95 E-value=3.2e+02 Score=27.81 Aligned_cols=74 Identities=28% Similarity=0.421 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH---H-----------HHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEA----EKKISDLSA---K-----------LEKLQKINDEQKSKIRKTE 178 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~----e~k~~el~~---k-----------~~~Lek~~~Eqk~~i~~lE 178 (286)
+..++..+++-++...+..+........++..+ ++++..|.. . +..+.......+..++.++
T Consensus 215 ~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~ 294 (511)
T PF09787_consen 215 ESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLE 294 (511)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHH
Confidence 344444466666666666544444444332222 334444433 1 3344444444455555555
Q ss_pred HHHHHHHHHHHH
Q 023185 179 RALKVAEEEMMR 190 (286)
Q Consensus 179 ~~lq~~Eeei~k 190 (286)
.++.....++..
T Consensus 295 ~Qi~~l~~e~~d 306 (511)
T PF09787_consen 295 RQIEQLRAELQD 306 (511)
T ss_pred HHHHHHHHHHHH
Confidence 555444444433
No 372
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=47.68 E-value=1.7e+02 Score=24.48 Aligned_cols=62 Identities=19% Similarity=0.281 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (286)
Q Consensus 127 ~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei 188 (286)
-|+.+=.....+....+-.++++..+++.|+......+.....+...|..||.+++.--..+
T Consensus 8 fLQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~ 69 (134)
T PF08232_consen 8 FLQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKY 69 (134)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555567777888888888888888888888888888888888888776644443
No 373
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=47.66 E-value=1.9e+02 Score=25.23 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (286)
Q Consensus 116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eee 187 (286)
..+..|...|...+...... ..+|..-+..+..-...+......+.....-....|..++.++..+...
T Consensus 110 ~~i~~L~~~i~~~q~~~~~~---i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 110 EIIEDLQDQIQKNQDKVQAL---INELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 35555555555555555444 3334444444444455555555556666655556666666555554443
No 374
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.59 E-value=2.6e+02 Score=27.42 Aligned_cols=53 Identities=21% Similarity=0.304 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDE 169 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~E 169 (286)
++..+..+.+.|+..-+.++....+|+.....++.....++...+-|...+.+
T Consensus 226 eme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 226 EMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44445555555665556665555666665555555555555555555444444
No 375
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=47.51 E-value=2e+02 Score=26.64 Aligned_cols=6 Identities=33% Similarity=0.684 Sum_probs=2.7
Q ss_pred hHHHHH
Q 023185 213 WLAVHL 218 (286)
Q Consensus 213 wla~~~ 218 (286)
|++.-+
T Consensus 185 ~LG~~y 190 (263)
T PRK10803 185 WLGQLN 190 (263)
T ss_pred HHHHHH
Confidence 555433
No 376
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=47.43 E-value=1.1e+02 Score=22.47 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=4.6
Q ss_pred hhhhHHHHHHHHH
Q 023185 67 ELKGKDEVVAQKE 79 (286)
Q Consensus 67 eL~~~d~~I~q~e 79 (286)
.++..+..++.++
T Consensus 14 ~l~~~~~~i~~lE 26 (71)
T PF10779_consen 14 KLDNHEERIDKLE 26 (71)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 377
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=47.31 E-value=85 Score=31.20 Aligned_cols=20 Identities=5% Similarity=0.169 Sum_probs=12.2
Q ss_pred chhhHHhhhhhhccCcCchH
Q 023185 255 VQPHVETIKAVSSFSYSSIP 274 (286)
Q Consensus 255 ~~ph~~~~~~~~~~~~~~~~ 274 (286)
++|++-.+....-+||..+|
T Consensus 231 sE~~l~~l~~~~~~s~~dLP 250 (425)
T PRK05431 231 AEVPLTNLHRDEILDEEELP 250 (425)
T ss_pred CcHHHHHHHhcccCCHHhCC
Confidence 34555566666666776666
No 378
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=47.04 E-value=3.4e+02 Score=27.84 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhh
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKG 70 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~ 70 (286)
+..++.+++.+..+++.+++.+..++.+
T Consensus 173 ~~~~L~~l~~~~~~~~~eld~L~~ql~E 200 (563)
T TIGR00634 173 ARQQLKDRQQKEQELAQRLDFLQFQLEE 200 (563)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554444433
No 379
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=47.01 E-value=71 Score=24.75 Aligned_cols=31 Identities=26% Similarity=0.437 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 125 IDNLKKESEKQQKEKEALEARAIEAEKKISD 155 (286)
Q Consensus 125 Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~e 155 (286)
|+++.++++..+.+..+++.+...++.++.+
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E 33 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTE 33 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444554444444444444444443333
No 380
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=46.92 E-value=1.3e+02 Score=23.05 Aligned_cols=48 Identities=8% Similarity=0.271 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKE 95 (286)
Q Consensus 48 ~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~e 95 (286)
+.++.....+.+........-++.+..|..--+++..+...+..|+..
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~ 54 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQA 54 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444554444444444444444443
No 381
>PF02097 Filo_VP35: Filoviridae VP35; InterPro: IPR002953 The filoviridae are a group of viruses that cause haemorrhagic fevers with a high mortality rate. The family currently contains three viruses: Ebola virus sp., Lake Victoria marburgvirus and Reston ebolavirus, named after their corresponding outbreak regions. They possess negative-stranded RNA genomes, which encode at least 7 proteins. The VP35 protein is found in the genomes of all filoviruses. Its function is presently unknown, but it is thought to share the function of the phosphorylated proteins (polymerase subunits) of rhabdoviruses and paramyxoviruses due to its position in the genome. There is no evidence however, to suggest that VP35 is phosphorylated [].; PDB: 3KS8_D 3L2A_A 3KS4_A 3L28_E 3L25_D 3FKE_B 3L26_A 3L27_D 3L29_B.
Probab=46.62 E-value=6.5 Score=37.06 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH-----hhhhccCCchhHHHHHHHHHHHHhhhhhh
Q 023185 157 SAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL-----TEVHSAWLPPWLAVHLLQCQSLIETHWNA 231 (286)
Q Consensus 157 ~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql-----~~~~g~~l~Pwla~~~~~~~~~~~~~w~~ 231 (286)
...+..|-..+..|-..++.++.++..++..+.-+..=+..+ ..| ..+....+.|--..+.-.+......||++
T Consensus 68 k~altsL~s~~~kQ~~~~e~L~~~l~~ie~~Lqpv~~M~~~i-~~L~~~~sEmvAKyd~LvmttGrATaTaaA~~Ay~~E 146 (321)
T PF02097_consen 68 KEALTSLTSCMEKQIVTMESLEARLTEIEAQLQPVLSMSKTI-SSLNRSCSEMVAKYDLLVMTTGRATATAAATEAYWQE 146 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHhhHHHHHHHhceeeeecCCcchhHHHhhhhHHh
Confidence 333444445555555566666666555555542221111110 111 11112333444556666667778899999
Q ss_pred hCcchh
Q 023185 232 HGKPAM 237 (286)
Q Consensus 232 hg~p~~ 237 (286)
||.|-=
T Consensus 147 Hg~pPP 152 (321)
T PF02097_consen 147 HGRPPP 152 (321)
T ss_dssp ------
T ss_pred cCCCCC
Confidence 999853
No 382
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=46.60 E-value=1.5e+02 Score=23.67 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023185 71 KDEVVAQKEKAIQDKSE 87 (286)
Q Consensus 71 ~d~~I~q~e~~i~e~~~ 87 (286)
....+...+..+.....
T Consensus 26 ~~~~~~~~e~~L~~~e~ 42 (126)
T PF13863_consen 26 REEQLKQREEELEKKEQ 42 (126)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 383
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=46.00 E-value=16 Score=29.52 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 70 ~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
++|..|+.+...+..+..++..|..++..++..+
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l 55 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQL 55 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566666666666666666666666666665333
No 384
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=45.90 E-value=1.1e+02 Score=22.07 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 72 DEVVAQKEKAIQDKSERIVSLQKEL 96 (286)
Q Consensus 72 d~~I~q~e~~i~e~~~eI~~Lq~eI 96 (286)
+.++..+++++..++..|..++..+
T Consensus 3 ~~E~~rL~Kel~kl~~~i~~~~~kL 27 (66)
T PF10458_consen 3 EAEIERLEKELEKLEKEIERLEKKL 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555444
No 385
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=45.54 E-value=2.8e+02 Score=26.51 Aligned_cols=44 Identities=11% Similarity=0.272 Sum_probs=21.6
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i 82 (286)
......-++++++..+..-.+.|..++.++..++.+|.-.++.|
T Consensus 132 n~~~F~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kki 175 (308)
T PF06717_consen 132 NDQDFNYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKI 175 (308)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444444444444444444433
No 386
>PRK11032 hypothetical protein; Provisional
Probab=45.33 E-value=1.7e+02 Score=25.44 Aligned_cols=17 Identities=24% Similarity=-0.214 Sum_probs=13.1
Q ss_pred ccCCchhHHHHHHHHHH
Q 023185 207 SAWLPPWLAVHLLQCQS 223 (286)
Q Consensus 207 g~~l~Pwla~~~~~~~~ 223 (286)
-.+||.||+.-.++++=
T Consensus 83 ~~slw~~L~~ItDrTqv 99 (160)
T PRK11032 83 KESLWQELADITDKTQL 99 (160)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 45788899888888764
No 387
>PF14992 TMCO5: TMCO5 family
Probab=44.79 E-value=2.8e+02 Score=26.32 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEK 64 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~ 64 (286)
++++.....+..|++++...
T Consensus 25 ~ki~~~E~~iq~Le~Eit~~ 44 (280)
T PF14992_consen 25 QKIQEKEGAIQSLEREITKM 44 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 388
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=44.18 E-value=26 Score=27.81 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=7.3
Q ss_pred CchhHHHHH-HHHHHH
Q 023185 1 MAASKLVIF-SLFFAL 15 (286)
Q Consensus 1 ~~~~~~~~~-~~~~~~ 15 (286)
|+ ||.|+| +++|++
T Consensus 1 Ma-SK~~llL~l~LA~ 15 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAA 15 (95)
T ss_pred Cc-hhHHHHHHHHHHH
Confidence 77 675444 444433
No 389
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=44.15 E-value=3.6e+02 Score=27.33 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 124 QIDNLKKESEKQQKEKEALEARAIE----------------------------AEKKISDLSAKLEKLQKINDEQKSKIR 175 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLEa~~~e----------------------------~e~k~~el~~k~~~Lek~~~Eqk~~i~ 175 (286)
+|..||+..++++.++.-|..+... +....+++......+.....++...+.
T Consensus 202 lvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~ 281 (552)
T KOG2129|consen 202 LVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLM 281 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666555544321 122344444444555555555555555
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023185 176 KTERALKVAEEEMMRAK 192 (286)
Q Consensus 176 ~lE~~lq~~Eeei~kle 192 (286)
++........++..+++
T Consensus 282 qy~~Ee~~~reen~rlQ 298 (552)
T KOG2129|consen 282 QYRAEEVDHREENERLQ 298 (552)
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 55555555555544443
No 390
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=43.54 E-value=3e+02 Score=26.31 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=20.9
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 53 ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
....|-++++=+.+.|.++++.+.+++.++.++..++.-+...++.+
T Consensus 106 ek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L 152 (302)
T PF09738_consen 106 EKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSL 152 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444433333333333
No 391
>PRK10869 recombination and repair protein; Provisional
Probab=43.40 E-value=3.9e+02 Score=27.53 Aligned_cols=40 Identities=8% Similarity=0.060 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 110 QVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA 149 (286)
Q Consensus 110 qi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~ 149 (286)
.+...+.|+..+.++-.++...++.+-...+.++.+...+
T Consensus 297 ~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L 336 (553)
T PRK10869 297 RLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQL 336 (553)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 3555566777777766666655555555555555554444
No 392
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=43.21 E-value=3.1e+02 Score=26.34 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=21.7
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 57 LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 57 Les~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
|...+...+.+|..+..+-.-+.+.+..-...-..|+.+|.+....+
T Consensus 54 ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRL 100 (305)
T PF14915_consen 54 LTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRL 100 (305)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444555555554444444444333333444455555444333
No 393
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=43.18 E-value=2.5e+02 Score=25.34 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQ 135 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~ 135 (286)
|...++.-|..++.--+..
T Consensus 98 ryek~K~vi~~~k~NEE~L 116 (207)
T PF05010_consen 98 RYEKQKEVIEGYKKNEETL 116 (207)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 3333444444444443333
No 394
>PLN02678 seryl-tRNA synthetase
Probab=42.85 E-value=1.3e+02 Score=30.41 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQQKEK 139 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~~~kk 139 (286)
+++.|+++|..+..++..+..+.
T Consensus 79 ~~~~Lk~ei~~le~~~~~~~~~l 101 (448)
T PLN02678 79 ETKELKKEITEKEAEVQEAKAAL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666666666653333
No 395
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.83 E-value=94 Score=29.17 Aligned_cols=19 Identities=11% Similarity=0.129 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 023185 69 KGKDEVVAQKEKAIQDKSE 87 (286)
Q Consensus 69 ~~~d~~I~q~e~~i~e~~~ 87 (286)
.+++.+|++++..|.+++.
T Consensus 59 ~~l~~Ql~~l~g~i~~L~~ 77 (262)
T COG1729 59 TQLEQQLRQLQGKIEELRG 77 (262)
T ss_pred HHHHHHHHHHHhhHHHHHh
Confidence 3334444444444444443
No 396
>PF15456 Uds1: Up-regulated During Septation
Probab=42.56 E-value=2e+02 Score=23.88 Aligned_cols=15 Identities=47% Similarity=0.833 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHhh
Q 023185 46 ELDQLKSKIRSLESH 60 (286)
Q Consensus 46 el~elk~ki~eLes~ 60 (286)
++++++.++..|.+.
T Consensus 23 EVe~LKkEl~~L~~R 37 (124)
T PF15456_consen 23 EVEELKKELRSLDSR 37 (124)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 397
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=42.52 E-value=4.4e+02 Score=27.88 Aligned_cols=97 Identities=15% Similarity=0.227 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 82 IQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLE 161 (286)
Q Consensus 82 i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~ 161 (286)
..++..+-.-|..++...+ .-..|.+.+|++|+.+|..++.+...-+.+-..-+..--=+..+.......++
T Consensus 331 VDeL~~E~~vLrgElea~k--------qak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMa 402 (832)
T KOG2077|consen 331 VDELTCEKDVLRGELEAVK--------QAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMA 402 (832)
T ss_pred HHhhccHHHHHhhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHH
Confidence 3344444444555544443 44456667999999988888887776655543333333333334444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 162 KLQKINDEQKSKIRKTERALKVAEE 186 (286)
Q Consensus 162 ~Lek~~~Eqk~~i~~lE~~lq~~Ee 186 (286)
..-=...+++..|=+|+.+..=+++
T Consensus 403 RVLMeRNqYKErLMELqEavrWTEM 427 (832)
T KOG2077|consen 403 RVLMERNQYKERLMELQEAVRWTEM 427 (832)
T ss_pred HHHHHHhHHHHHHHHHHHHHhHHHH
Confidence 4444556667777777766665543
No 398
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=42.50 E-value=1.8e+02 Score=23.43 Aligned_cols=32 Identities=28% Similarity=0.373 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (286)
Q Consensus 125 Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el 156 (286)
+.-+++.++.+......++.....+...+..+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~ 120 (129)
T cd00584 89 IEFLDKKIEELTKQIEKLQKELAKLKDQINTL 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443333333
No 399
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=42.28 E-value=2.5e+02 Score=25.30 Aligned_cols=93 Identities=20% Similarity=0.321 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDE-KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e-~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eL 121 (286)
++.+|.+|..++...+..... ....=....--=.+.+..+.-+..++..+.+ ..-... ..+.....-|..+
T Consensus 101 LkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~---~~~~~~-----~~l~~v~~Dl~~i 172 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEE---GRSKSG-----KNLKSVREDLDTI 172 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhc---cCCCCC-----CCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023185 122 EKQIDNLKKESEKQQKEKEALE 143 (286)
Q Consensus 122 ek~Ie~Lk~eie~~~~kk~eLE 143 (286)
+.+|+.|+.=+...+...+.|.
T Consensus 173 e~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 173 EEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
No 400
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=42.20 E-value=1.2e+02 Score=21.50 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
..+...+..++.....+...+..|..++..+
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444333
No 401
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=42.12 E-value=2.6e+02 Score=25.24 Aligned_cols=44 Identities=18% Similarity=0.373 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 50 LKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQ 93 (286)
Q Consensus 50 lk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq 93 (286)
+++++.+....+.....+|.++...+......+...+..+..++
T Consensus 15 LKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~ 58 (202)
T PF06818_consen 15 LKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQ 58 (202)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33333333333333333333333333333333333333333333
No 402
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=42.00 E-value=3.6e+02 Score=26.81 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE 178 (286)
.++-.++++..++...+..|.+..- .......++.+.++.-+..|.++|
T Consensus 270 ~~elHq~Ei~~LKqeLa~~EEK~~Y------qs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 270 LTELHQNEIYNLKQELASMEEKMAY------QSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444444332 223333455555555556666666
No 403
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=41.81 E-value=3.2e+02 Score=26.06 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle 192 (286)
.-..++.+.+....+...||........+-...+..+-.|-.........+..+......++.-...++
T Consensus 238 ~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ 306 (309)
T PF09728_consen 238 VFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQ 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666666666666666666666666666666666666666666666666666555555444443
No 404
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=41.46 E-value=1e+02 Score=30.30 Aligned_cols=50 Identities=24% Similarity=0.469 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
-++.++.++..++.+++++...+.... ...+.+.+...++.+++.+|...
T Consensus 243 ~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~ 292 (406)
T PF02388_consen 243 YLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEA 292 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544433332222 33444444444444444444444
No 405
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.45 E-value=2.4e+02 Score=24.50 Aligned_cols=12 Identities=17% Similarity=0.584 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 023185 87 ERIVSLQKELSS 98 (286)
Q Consensus 87 ~eI~~Lq~eI~~ 98 (286)
.++..++.+++.
T Consensus 125 ~~l~~~~~~~~~ 136 (192)
T PF05529_consen 125 KELIKLEEKLEA 136 (192)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 406
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=41.38 E-value=1.6e+02 Score=25.99 Aligned_cols=30 Identities=30% Similarity=0.281 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 71 ~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
++-++....++|..+..+|..|+++|+...
T Consensus 103 ~~leL~s~~~ei~~L~~kI~~L~~~in~~~ 132 (181)
T PF04645_consen 103 KNLELKSIKKEIEILRLKISSLQKEINKNK 132 (181)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 344555666666666666666666666554
No 407
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=41.38 E-value=73 Score=23.13 Aligned_cols=9 Identities=44% Similarity=0.612 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 023185 49 QLKSKIRSL 57 (286)
Q Consensus 49 elk~ki~eL 57 (286)
+++.++.++
T Consensus 21 ~~~~ei~~l 29 (80)
T PF04977_consen 21 QLNQEIAEL 29 (80)
T ss_pred HHHHHHHHH
Confidence 333333333
No 408
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=40.98 E-value=1.2e+02 Score=21.51 Aligned_cols=28 Identities=21% Similarity=0.378 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 73 EVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 73 ~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
..|..++..+..++.+...|..++..+.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 409
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=40.85 E-value=1.6e+02 Score=28.29 Aligned_cols=14 Identities=7% Similarity=0.193 Sum_probs=7.5
Q ss_pred ccCCchhHHHHHHH
Q 023185 207 SAWLPPWLAVHLLQ 220 (286)
Q Consensus 207 g~~l~Pwla~~~~~ 220 (286)
|..+|+-+.+....
T Consensus 116 G~lIP~~~~~~I~~ 129 (378)
T TIGR01554 116 GVTIPEEIGTKIEK 129 (378)
T ss_pred CeeCCHHHHHHHHH
Confidence 55666665554333
No 410
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=40.73 E-value=5.4e+02 Score=28.45 Aligned_cols=61 Identities=23% Similarity=0.198 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
+..++.++..++...+........+.......-.+.++....+..++..++.+.+.+-+++
T Consensus 472 ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el 532 (913)
T KOG0244|consen 472 LSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNEL 532 (913)
T ss_pred hhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555444
No 411
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=40.73 E-value=2.6e+02 Score=24.79 Aligned_cols=54 Identities=26% Similarity=0.350 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 138 EKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 138 kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
....++....+++.++-++......+...+......|..++.....+.+.+...
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555554444443
No 412
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=40.69 E-value=1.9e+02 Score=30.18 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 160 LEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (286)
Q Consensus 160 ~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle 192 (286)
+..+.+...+.+..++.+......++++++++.
T Consensus 600 ~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 600 LTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444445555555566666656655555543
No 413
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=40.64 E-value=3.7e+02 Score=26.57 Aligned_cols=147 Identities=16% Similarity=0.246 Sum_probs=72.1
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023185 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE---KAIQDKSER-IVSLQKELSSLQKKETLNAAEQVDKAHA 116 (286)
Q Consensus 41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e---~~i~e~~~e-I~~Lq~eI~~~qkkl~~~~~eqi~ka~~ 116 (286)
....+++..++.++...+.........+......+.... .......+. |..|..+...+...+ .+........+-
T Consensus 235 ~~~~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~-~~l~~~~~~~~p 313 (458)
T COG3206 235 LLSEQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQI-ADLSTELGAKHP 313 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHH-HHHHHhhcccCh
Confidence 334666677777777777777776666666666665544 333333344 666666666655433 111222222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQQKEK--------EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~~~kk--------~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei 188 (286)
++..++.++..+...+...-... ..++.+.+.+++.+..++.....+- .....+.+++++.+.....+
T Consensus 314 ~~~~~~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~----~~~~~l~~L~Re~~~~r~~y 389 (458)
T COG3206 314 QLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLP----KLQVQLRELEREAEAARSLY 389 (458)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhch----HhhhHHHHHHHHHHHHHHHH
Confidence 33334444444444443332222 3334444444444444444443333 34455555555555555555
Q ss_pred HHHH
Q 023185 189 MRAK 192 (286)
Q Consensus 189 ~kle 192 (286)
+.+-
T Consensus 390 e~lL 393 (458)
T COG3206 390 ETLL 393 (458)
T ss_pred HHHH
Confidence 5543
No 414
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.41 E-value=3e+02 Score=25.98 Aligned_cols=30 Identities=27% Similarity=0.447 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHH
Q 023185 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVA 76 (286)
Q Consensus 47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~ 76 (286)
+..|+.+|..|+.-+....+.|-++|.+|.
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqis 256 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQIS 256 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhh
Confidence 444555555555555443333333333333
No 415
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=40.33 E-value=2.3e+02 Score=23.99 Aligned_cols=11 Identities=9% Similarity=0.374 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 023185 125 IDNLKKESEKQ 135 (286)
Q Consensus 125 Ie~Lk~eie~~ 135 (286)
|..++.++...
T Consensus 79 vr~a~~dv~nk 89 (136)
T PF11570_consen 79 VRRAQKDVQNK 89 (136)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 416
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=40.08 E-value=1.6e+02 Score=27.42 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 70 ~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
+..+.|..+......+...|+.|+++|..-+..+
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL 210 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQL 210 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555554333
No 417
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=39.80 E-value=1.9e+02 Score=23.01 Aligned_cols=40 Identities=15% Similarity=0.377 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 023185 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS 86 (286)
Q Consensus 47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~ 86 (286)
+..++..+..-...+......+......|...+..|.+--
T Consensus 9 ~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~ 48 (126)
T PF13863_consen 9 MFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDV 48 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444333
No 418
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=39.75 E-value=3.8e+02 Score=26.44 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhccCCch
Q 023185 174 IRKTERALKVAEEEMMRAKFEATSRSKELTEVHSAWLPP 212 (286)
Q Consensus 174 i~~lE~~lq~~Eeei~kle~Ea~~~a~ql~~~~g~~l~P 212 (286)
-+.++.-...+.+++.++..+-....+.=...+|.|||.
T Consensus 362 ~~k~~~i~~~~~eeL~~l~eeE~~~Re~F~~e~GdyLP~ 400 (412)
T PF04108_consen 362 RDKMKKIIREANEELDKLREEEQRRREAFLKEYGDYLPE 400 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCh
Confidence 445555555556666665554444444445666999987
No 419
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=39.16 E-value=5.3e+02 Score=27.89 Aligned_cols=56 Identities=23% Similarity=0.258 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhhHHH-------HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDE-------KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 46 el~elk~ki~eLes~i~e-------~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
+|.+....|+.|..+=+. .+..|+.+..++.+.++....+-..|..|+++...++.
T Consensus 447 eLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~ 509 (961)
T KOG4673|consen 447 ELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKS 509 (961)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHH
Confidence 444445555555444443 34456677777777777777777788888888887754
No 420
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=38.98 E-value=2.9e+02 Score=24.81 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHHHHHHH
Q 023185 50 LKSKIRSLESHIDEKTQELKGKDEVVAQ 77 (286)
Q Consensus 50 lk~ki~eLes~i~e~~~eL~~~d~~I~q 77 (286)
.+....+|+++.+..++.+..+.+.+..
T Consensus 79 ~ks~~qeLe~~L~~~~qk~~tl~e~~en 106 (203)
T KOG3433|consen 79 RKSVLQELESQLATGSQKKATLGESIEN 106 (203)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 3444445555555555544444444443
No 421
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=38.96 E-value=1.7e+02 Score=22.15 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVA 76 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~ 76 (286)
..++.++.++.++......+...|.....++.
T Consensus 14 P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~ 45 (92)
T PF14712_consen 14 PDLDRLDQQLQELRQSQEELLQQIDRLNEKLK 45 (92)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554444444444443
No 422
>PRK11519 tyrosine kinase; Provisional
Probab=38.86 E-value=5e+02 Score=27.51 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023185 170 QKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 170 qk~~i~~lE~~lq~~Eeei~k 190 (286)
.+..+..++++.+..+..+..
T Consensus 368 ~e~~~~~L~Re~~~~~~lY~~ 388 (719)
T PRK11519 368 TQQEIVRLTRDVESGQQVYMQ 388 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554444
No 423
>COG5570 Uncharacterized small protein [Function unknown]
Probab=38.81 E-value=1.3e+02 Score=21.61 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEK 80 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~ 80 (286)
.+.+.++..+--.|+.+|++..+-=..=|..|.++..
T Consensus 4 eshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKR 40 (57)
T COG5570 4 ESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKR 40 (57)
T ss_pred HHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHH
Confidence 3444444444444444444444433333444444333
No 424
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=38.73 E-value=2.6e+02 Score=24.16 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHH
Q 023185 142 LEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE-MMRAKFEATSRSKEL 202 (286)
Q Consensus 142 LEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eee-i~kle~Ea~~~a~ql 202 (286)
++.|...+...+.+......+.+....+++..+.......+.+..+ .+++..++......+
T Consensus 39 Le~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ 100 (155)
T PRK06569 39 FNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNL 100 (155)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 425
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=38.38 E-value=3.4e+02 Score=26.94 Aligned_cols=83 Identities=24% Similarity=0.279 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHhhhhhcccCCCCCcccccccCCCchhHHHHHHHHHHHHHHHhhHH------HHHHhhhhHHHHH
Q 023185 2 AASKLVIFSLFFALILTAADVSIQGEDVPPLTASDAVDSSPLKIELDQLKSKIRSLESHID------EKTQELKGKDEVV 75 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~elk~ki~eLes~i~------e~~~eL~~~d~~I 75 (286)
+-+.+.+++++++| +-+++.-...+++......+...++.+-. +...-+..++..+
T Consensus 31 ~g~~l~~~all~aL------------------gLGagg~~f~QqQ~~~~~~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~ 92 (391)
T COG2959 31 AGLLLSLAALLLAL------------------GLGAGGYYFGQQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLI 92 (391)
T ss_pred chhHHHHHHHHHHH------------------HhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185 76 AQKEKAIQDKSERIVSLQKELSSLQKK 102 (286)
Q Consensus 76 ~q~e~~i~e~~~eI~~Lq~eI~~~qkk 102 (286)
.+.+.++.....++...+..|++.|++
T Consensus 93 ~~~q~el~~l~~~~~~~~~ql~e~Q~~ 119 (391)
T COG2959 93 AQQQAELDRLERQLETLQKQLSELQKK 119 (391)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
No 426
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=38.37 E-value=45 Score=19.80 Aligned_cols=18 Identities=33% Similarity=0.744 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 023185 46 ELDQLKSKIRSLESHIDE 63 (286)
Q Consensus 46 el~elk~ki~eLes~i~e 63 (286)
+++.++.+|.+|+++.++
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 466677777777776654
No 427
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=38.12 E-value=2.7e+02 Score=24.44 Aligned_cols=53 Identities=21% Similarity=0.458 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK-----EKAIQDKSERIVSLQKELSS 98 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~-----e~~i~e~~~eI~~Lq~eI~~ 98 (286)
.++.+..+.+.+..+++++...+..++..+.-- -.+|.++-..|.+|+..|..
T Consensus 86 R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 86 DFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333322 23444444444444444433
No 428
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=38.04 E-value=2.4e+02 Score=23.53 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=21.3
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKD-------EVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d-------~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkk 102 (286)
+-..+...+...+..+......++++.+.+..+. ..|.++.....+++..+-.+-..++.+...
T Consensus 31 GF~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~ 101 (141)
T PF13874_consen 31 GFEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNR 101 (141)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444444444444444444444444444443 334444444444444444444444444433
No 429
>PF15294 Leu_zip: Leucine zipper
Probab=37.72 E-value=3.6e+02 Score=25.56 Aligned_cols=71 Identities=32% Similarity=0.461 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q 023185 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKS---------KIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 121 Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~---------~i~~lE~~lq~~Eeei~kl 191 (286)
|.++|..|+.+-+..+.....++.++..+-.....++..+.+++.....++. .+..++.....+..++.+.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~ 209 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKA 209 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 4557777887777777777778878777777778888888888885555444 3455565555555555553
No 430
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=37.67 E-value=2e+02 Score=23.53 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023185 114 AHARADELEKQIDNLKKES 132 (286)
Q Consensus 114 a~~Ri~eLek~Ie~Lk~ei 132 (286)
...||..|+++|.+|++++
T Consensus 88 l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 88 LTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3367777888887777654
No 431
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=37.63 E-value=2.3e+02 Score=28.19 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023185 169 EQKSKIRKTERALKVAEEEMM 189 (286)
Q Consensus 169 Eqk~~i~~lE~~lq~~Eeei~ 189 (286)
+....+.++...+..++..+.
T Consensus 386 ~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 386 ELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444333333333
No 432
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=37.59 E-value=2.5e+02 Score=23.66 Aligned_cols=55 Identities=24% Similarity=0.393 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
..+.+-.....|+.+.+.....|..+..+++..+..+..-...|..|+..+....
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~ 75 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALE 75 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666666666666666666666666665555554
No 433
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=36.91 E-value=2.2e+02 Score=28.24 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHhhH
Q 023185 44 KIELDQLKSKIRSLESHI 61 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i 61 (286)
..+++.++.++..+...+
T Consensus 333 ~~~~~~l~~~~~~~~~~l 350 (451)
T PF03961_consen 333 KEKLEELEEELEELKEEL 350 (451)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 434
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=36.87 E-value=2.3e+02 Score=25.80 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023185 169 EQKSKIRKTERALKVAEEEMM 189 (286)
Q Consensus 169 Eqk~~i~~lE~~lq~~Eeei~ 189 (286)
+.+.+|+.++.++..+...+.
T Consensus 173 ~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 173 RVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333444444444444444433
No 435
>PHA03332 membrane glycoprotein; Provisional
Probab=36.65 E-value=6.8e+02 Score=28.42 Aligned_cols=18 Identities=22% Similarity=0.554 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023185 109 EQVDKAHARADELEKQID 126 (286)
Q Consensus 109 eqi~ka~~Ri~eLek~Ie 126 (286)
..|...+.||.+|+.+|.
T Consensus 930 ~nI~avNgRIs~Led~VN 947 (1328)
T PHA03332 930 NNIRAVNGRVSDLEDQVN 947 (1328)
T ss_pred hhHHHhcccHHHHHHHHH
Confidence 333444456666655443
No 436
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.64 E-value=1.8e+02 Score=27.37 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=18.6
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 023185 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE 87 (286)
Q Consensus 52 ~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~ 87 (286)
=+|..|+.+|..+..-|..+|..|-+..+.|.++..
T Consensus 225 V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 455566655555555555555555444444444443
No 437
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=36.62 E-value=4.5e+02 Score=26.37 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023185 158 AKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (286)
Q Consensus 158 ~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~ 198 (286)
..+..+...+...+..|++.+..++.+..--.+++.+..-+
T Consensus 351 ~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k 391 (421)
T KOG2685|consen 351 DEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIK 391 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444444444433
No 438
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=36.55 E-value=3.5e+02 Score=25.04 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEKQIDNLKKESEKQQKEKE 140 (286)
Q Consensus 116 ~Ri~eLek~Ie~Lk~eie~~~~kk~ 140 (286)
.|..+|+.++.....++...+.+.+
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~ 117 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVE 117 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444433333
No 439
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.41 E-value=5.4e+02 Score=27.14 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHH------
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKD-------EVVAQKEKAIQDKSERIVSLQKELSSLQKKE----TLN------ 106 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d-------~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl----~~~------ 106 (286)
.++++.++..|..|..+.++.+.++-... ++=..+++...+++..++.+-.+|+.++..+ +..
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~ 86 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARD 86 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 46777777788777777777665543322 1223455666677777777777777665444 000
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 107 ----AAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALK 182 (286)
Q Consensus 107 ----~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq 182 (286)
.+.-+..+-++-..+-..|-+|++++.+.+............+.+...++..-...++......+..|.++.-...
T Consensus 87 g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~ 166 (772)
T KOG0999|consen 87 GEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREA 166 (772)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHH
Confidence 0011111111111122256666666666655555445544455444444444444444444444555555554444
Q ss_pred HHHHHHHHHHHHhhhh
Q 023185 183 VAEEEMMRAKFEATSR 198 (286)
Q Consensus 183 ~~Eeei~kle~Ea~~~ 198 (286)
.+=.++.+++.+.-.+
T Consensus 167 RllseYSELEEENIsL 182 (772)
T KOG0999|consen 167 RLLSEYSELEEENISL 182 (772)
T ss_pred HHHHHHHHHHHhcchH
Confidence 4445555554444333
No 440
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.38 E-value=1.9e+02 Score=21.94 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 76 AQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 76 ~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
++++..+..--..|+-||-+|+.++.
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKE 32 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555566666666666643
No 441
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=36.19 E-value=4.6e+02 Score=26.32 Aligned_cols=142 Identities=20% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIV--SLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~--~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLe 122 (286)
.++..++..+..|.+--..-..++..-=..|...-+.+....-... .-..-|+.-+.++ .+....+.. |+++|+
T Consensus 151 ~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L-~~~sd~Ll~---kVdDLQ 226 (424)
T PF03915_consen 151 KEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKL-SEESDRLLT---KVDDLQ 226 (424)
T ss_dssp -------------------------------------------------HHHHHHHHHHHH-HHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH-HHHHHHHHH---HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 123 KQIDNLKKESEKQQKEK-----EALEARAIEAEKKISDLSAKL------------EKLQKINDEQKSKIRKTERALKVAE 185 (286)
Q Consensus 123 k~Ie~Lk~eie~~~~kk-----~eLEa~~~e~e~k~~el~~k~------------~~Lek~~~Eqk~~i~~lE~~lq~~E 185 (286)
..|+.|+.+.-...-.- +.+..+...+.+.+..+..-+ ..|+.+..+|+-.-.+ +.-+..+.
T Consensus 227 D~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~Q-edL~~DL~ 305 (424)
T PF03915_consen 227 DLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQ-EDLLSDLK 305 (424)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_pred HHHHHH
Q 023185 186 EEMMRA 191 (286)
Q Consensus 186 eei~kl 191 (286)
+.+.++
T Consensus 306 eDl~k~ 311 (424)
T PF03915_consen 306 EDLKKA 311 (424)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 442
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=36.17 E-value=4.1e+02 Score=25.70 Aligned_cols=13 Identities=38% Similarity=0.360 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 023185 46 ELDQLKSKIRSLE 58 (286)
Q Consensus 46 el~elk~ki~eLe 58 (286)
+.|+.+.-.++|+
T Consensus 24 ErDqyKlMAEqLq 36 (319)
T PF09789_consen 24 ERDQYKLMAEQLQ 36 (319)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 443
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=36.15 E-value=5.2e+02 Score=26.92 Aligned_cols=84 Identities=13% Similarity=0.204 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023185 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (286)
Q Consensus 123 k~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql 202 (286)
+.+..+......+-.....-+.....+...++.....+..+++........+..+.++--.+.+.+.++.......-+-+
T Consensus 354 ~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~m 433 (570)
T COG4477 354 KELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYM 433 (570)
T ss_pred HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555554444444445555666666777777777777777777777787777777777777766655554444
Q ss_pred hhhh
Q 023185 203 TEVH 206 (286)
Q Consensus 203 ~~~~ 206 (286)
.+.+
T Consensus 434 ek~n 437 (570)
T COG4477 434 EKSN 437 (570)
T ss_pred HHcC
Confidence 3333
No 444
>PRK10869 recombination and repair protein; Provisional
Probab=35.87 E-value=5.1e+02 Score=26.69 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 023185 140 EALEARAIEAEKKISD 155 (286)
Q Consensus 140 ~eLEa~~~e~e~k~~e 155 (286)
+.++.|...+......
T Consensus 299 ~~ie~Rl~~l~~L~rK 314 (553)
T PRK10869 299 AELEQRLSKQISLARK 314 (553)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555443333
No 445
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=35.74 E-value=3.5e+02 Score=24.84 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhh
Q 023185 154 SDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELTE 204 (286)
Q Consensus 154 ~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql~~ 204 (286)
...+..+..|+..++.....|+++++.++.+|--+...-..++.+.+.+.+
T Consensus 70 ~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~ 120 (272)
T KOG4552|consen 70 QKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKE 120 (272)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777888888888888888888888877777777666643
No 446
>PRK11546 zraP zinc resistance protein; Provisional
Probab=35.51 E-value=2.8e+02 Score=23.67 Aligned_cols=21 Identities=14% Similarity=0.449 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQQK 137 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~~~ 137 (286)
+|+.|.++|.+|..++.+.+.
T Consensus 90 kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 90 KINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544433
No 447
>PRK14127 cell division protein GpsB; Provisional
Probab=35.33 E-value=1.8e+02 Score=23.66 Aligned_cols=9 Identities=44% Similarity=0.741 Sum_probs=5.5
Q ss_pred HHHHHHHHH
Q 023185 117 RADELEKQI 125 (286)
Q Consensus 117 Ri~eLek~I 125 (286)
|+-.|++.|
T Consensus 93 Rls~LEk~V 101 (109)
T PRK14127 93 RLSNLEKHV 101 (109)
T ss_pred HHHHHHHHH
Confidence 666666644
No 448
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=34.95 E-value=4.2e+02 Score=26.27 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 166 INDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 166 ~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
...+.+..|..++..+..++.++..
T Consensus 77 ~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 77 ELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555544
No 449
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=34.86 E-value=1.7e+02 Score=28.19 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhHHHH
Q 023185 50 LKSKIRSLESHIDEK 64 (286)
Q Consensus 50 lk~ki~eLes~i~e~ 64 (286)
++.++..+..++..+
T Consensus 4 l~~~~~~~~~~~r~l 18 (378)
T TIGR01554 4 LKEQREEIVAEIRSL 18 (378)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 450
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=34.59 E-value=2.7e+02 Score=23.19 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Q 023185 83 QDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA------------- 149 (286)
Q Consensus 83 ~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~------------- 149 (286)
....++.+.|+.++..+ .+... .|-...+..-+.+.+++.........++.+...+
T Consensus 23 ~~v~~~l~~LEae~q~L---------~~kE~--~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eY 91 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQL---------EQKEE--ARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEY 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHH
T ss_pred hHHHHHHHHHHHHHHHH---------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 150 EKKISDLSAKLEKLQKINDEQKSKIRKTER 179 (286)
Q Consensus 150 e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~ 179 (286)
...++.+...+.+|++...+++..|+.++.
T Consensus 92 k~llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 92 KELLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 451
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=34.42 E-value=4.3e+02 Score=25.42 Aligned_cols=15 Identities=13% Similarity=0.428 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 023185 109 EQVDKAHARADELEK 123 (286)
Q Consensus 109 eqi~ka~~Ri~eLek 123 (286)
.++..++-++.+++.
T Consensus 186 rdL~Qtq~q~KE~e~ 200 (305)
T PF14915_consen 186 RDLSQTQCQIKEIEH 200 (305)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444445555444
No 452
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=34.38 E-value=57 Score=26.11 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=7.2
Q ss_pred HHhhHHHHHHhhhhHHHHH
Q 023185 57 LESHIDEKTQELKGKDEVV 75 (286)
Q Consensus 57 Les~i~e~~~eL~~~d~~I 75 (286)
+++..+.+..+|..+...+
T Consensus 13 ae~~~~~ie~ElEeLTasL 31 (100)
T PF06428_consen 13 AEQEKEQIESELEELTASL 31 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 453
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=34.37 E-value=3.2e+02 Score=23.94 Aligned_cols=15 Identities=0% Similarity=0.237 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 023185 82 IQDKSERIVSLQKEL 96 (286)
Q Consensus 82 i~e~~~eI~~Lq~eI 96 (286)
|.+++..++.+..+|
T Consensus 101 i~eLe~~l~~kad~v 115 (175)
T PRK13182 101 LDELERQLQQKADDV 115 (175)
T ss_pred HHHHHHHHHHHHhhh
Confidence 333333333333333
No 454
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=34.20 E-value=2.1e+02 Score=21.78 Aligned_cols=53 Identities=17% Similarity=0.311 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 140 EALEARAIEAEKKISDLSAKLEK---LQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (286)
Q Consensus 140 ~eLEa~~~e~e~k~~el~~k~~~---Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle 192 (286)
..+......+..++....+.+.. +....++|...|+.++..+..-...+.++.
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~ 79 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFK 79 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555444 556666777777777776666665555543
No 455
>smart00338 BRLZ basic region leucin zipper.
Probab=34.16 E-value=1.7e+02 Score=20.83 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (286)
Q Consensus 69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~ 98 (286)
..++..+..++.....+..++..|..++..
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444433333
No 456
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=34.00 E-value=5.7e+02 Score=26.70 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA 149 (286)
Q Consensus 111 i~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~ 149 (286)
+.+.+.|+..|..+..++...++.+-.....+..+...+
T Consensus 299 L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L 337 (557)
T COG0497 299 LEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQL 337 (557)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 444456777777755555554444444444444433333
No 457
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=33.94 E-value=3e+02 Score=23.44 Aligned_cols=55 Identities=18% Similarity=0.242 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
.-+++..+-+.-++++++.+..+=..+-.+-+.+..+++.+...|+.+=..+..+
T Consensus 31 ~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~tld~vf~aV~dl 85 (139)
T COG4768 31 KTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQGKVATLDPVFDAVKDL 85 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHH
Confidence 4567777777777777777777766666666666666666666666655555443
No 458
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=33.72 E-value=6.5e+02 Score=27.34 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 159 KLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (286)
Q Consensus 159 k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~ 196 (286)
..+.|..+....++++..+..+.+.+...++.+..+..
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~ 254 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELD 254 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33445555555555555555555555555554444443
No 459
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=33.31 E-value=3.5e+02 Score=28.16 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023185 81 AIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 81 ~i~e~~~eI~~Lq~eI~~~qk 101 (286)
++..++..|..++.++..++.
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~ 584 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEE 584 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 460
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=33.22 E-value=2.4e+02 Score=22.05 Aligned_cols=14 Identities=14% Similarity=0.299 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 023185 83 QDKSERIVSLQKEL 96 (286)
Q Consensus 83 ~e~~~eI~~Lq~eI 96 (286)
..+..++..++..+
T Consensus 20 ~~k~~~~~~lE~k~ 33 (96)
T PF08647_consen 20 DKKVKELTILEQKK 33 (96)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 461
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=33.15 E-value=3.3e+02 Score=23.76 Aligned_cols=13 Identities=38% Similarity=0.299 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 023185 87 ERIVSLQKELSSL 99 (286)
Q Consensus 87 ~eI~~Lq~eI~~~ 99 (286)
.++..|+.++..+
T Consensus 111 ~e~~~l~~~~e~L 123 (161)
T TIGR02894 111 NQNESLQKRNEEL 123 (161)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 462
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=32.65 E-value=5.4e+02 Score=27.25 Aligned_cols=89 Identities=22% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 023185 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKEL 202 (286)
Q Consensus 123 k~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql 202 (286)
++|+.|-.+--++-..+..|---++++..++.+++....-|.......+..--+++..+..+++++.++..++-....+-
T Consensus 301 rEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~ 380 (832)
T KOG2077|consen 301 REVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKA 380 (832)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred hhhhccCCc
Q 023185 203 TEVHSAWLP 211 (286)
Q Consensus 203 ~~~~g~~l~ 211 (286)
..-....+|
T Consensus 381 ~~~e~ddiP 389 (832)
T KOG2077|consen 381 KDDEDDDIP 389 (832)
T ss_pred ccccccccc
No 463
>PRK04098 sec-independent translocase; Provisional
Probab=32.46 E-value=36 Score=29.57 Aligned_cols=102 Identities=15% Similarity=0.184 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHHHHhh---hhhcccCCCCCcc---cccccCCCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHH
Q 023185 1 MAASKLVIFSLFFALILTA---ADVSIQGEDVPPL---TASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEV 74 (286)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~ 74 (286)
|+++-+++++++++++|.. .+.+..-+-.... ....+.+...-.-.+.+++......+..++.....++.. -.
T Consensus 4 iG~~EllvI~vVaLlvfGP~KLP~~~r~lGk~ir~~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~~-~~ 82 (158)
T PRK04098 4 MGFFEILVILVVAIIFLGPDKLPQAMVDIAKFFKAVKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKK-LK 82 (158)
T ss_pred CcHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-cC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 75 VAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 75 I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
++++..........+..++..+.+++..+
T Consensus 83 ~eel~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (158)
T PRK04098 83 FEELDDLKITAENEIKSIQDLLQDYKKSL 111 (158)
T ss_pred hHHHHHHhhhhhhcchhHHHHHhhhhhcc
No 464
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=32.41 E-value=1.6e+02 Score=27.50 Aligned_cols=53 Identities=26% Similarity=0.422 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHhhhhH------------------------HHHHHHHHHHHHHHHHHHHHHH
Q 023185 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGK------------------------DEVVAQKEKAIQDKSERIVSLQ 93 (286)
Q Consensus 41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~------------------------d~~I~q~e~~i~e~~~eI~~Lq 93 (286)
.+++++-.++...|+.|+..+.+...+|... ++.|..-+.+|.+++.++..||
T Consensus 183 ~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~Lq 259 (259)
T PF08657_consen 183 AALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKRELQ 259 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhcC
No 465
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=32.25 E-value=1.9e+02 Score=32.04 Aligned_cols=62 Identities=23% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 78 KEKAIQDKSERIVSLQKELSSLQKKE------TLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEK 139 (286)
Q Consensus 78 ~e~~i~e~~~eI~~Lq~eI~~~qkkl------~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk 139 (286)
.++++..++.++..++.+|+.+++++ ...-.+-+.+-..++.+++.+++.|++.+.....-+
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~~~~ 994 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELKSLL 994 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 466
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=32.21 E-value=2.4e+02 Score=21.75 Aligned_cols=98 Identities=15% Similarity=0.245 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 023185 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE-LEKQIDNLKKESEKQQKEK-EALEARAI 147 (286)
Q Consensus 70 ~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~e-Lek~Ie~Lk~eie~~~~kk-~eLEa~~~ 147 (286)
.+...+..+...+......+..+...+..++ .+...+..+|+. +..++.-|......+-.+. ..-..+..
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~--------~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~ 75 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVE--------ENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLK 75 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 148 EAEKKISDLSAKLEKLQKINDEQKSKIR 175 (286)
Q Consensus 148 e~e~k~~el~~k~~~Lek~~~Eqk~~i~ 175 (286)
.+......++..+..+......-+..+.
T Consensus 76 ~l~~q~~~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 76 VLEQQLESLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 467
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=32.17 E-value=3.5e+02 Score=26.33 Aligned_cols=59 Identities=22% Similarity=0.293 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQK-EKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~-e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
++..+-+.++...+.+..++++........+..|=.. -..|+++..+|..|+..+...+
T Consensus 148 ~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 148 HLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
No 468
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=32.16 E-value=1.6e+02 Score=24.77 Aligned_cols=47 Identities=26% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 57 LESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 57 Les~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
+...+.+.-.-|+..+..+..++.++..+..+|..|..+++++...+
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n 124 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRAN 124 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=32.03 E-value=2.4e+02 Score=21.78 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 023185 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121 (286)
Q Consensus 47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eL 121 (286)
++++..||.+.=..|.=+.-+|.++.++=..+..+.....+.-..|..+...++ .+-..=+.|++.|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk--------~E~~~WqerLr~L 72 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK--------EQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------HHHHHHHHHHHHH
No 470
>PRK14011 prefoldin subunit alpha; Provisional
Probab=31.81 E-value=3.2e+02 Score=23.19 Aligned_cols=92 Identities=21% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------------------------
Q 023185 64 KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE---------------------------------------- 103 (286)
Q Consensus 64 ~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl---------------------------------------- 103 (286)
+++++..+-..|.....+++.++..|..|..-+......+
T Consensus 1 ~~~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy 80 (144)
T PRK14011 1 MNEELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDI 80 (144)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCe
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 023185 104 --TLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALE----ARAIEAEKKISD 155 (286)
Q Consensus 104 --~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLE----a~~~e~e~k~~e 155 (286)
+.+..+-+..-+.|+..|++..+.+...+++.+.....+. .+...+..+...
T Consensus 81 ~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~~~~~~~ 138 (144)
T PRK14011 81 YLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAIEQRQAQ 138 (144)
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 471
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=31.71 E-value=3.2e+02 Score=23.10 Aligned_cols=77 Identities=17% Similarity=0.324 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 60 HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQK 137 (286)
Q Consensus 60 ~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~ 137 (286)
..+.....+......+......+..+..+|..|......+...- ...+.....+...+..-++.|+.|+.+-+..+.
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q-~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQ-AQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
No 472
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.35 E-value=6.4e+02 Score=26.54 Aligned_cols=141 Identities=11% Similarity=0.137 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hHHHHHH
Q 023185 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE----------TLNAAEQ 110 (286)
Q Consensus 41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl----------~~~~~eq 110 (286)
++++..+++++.++.+-=+.+.+.++++..+.+.-..+...+.+....-..|......+-..- +.+=..+
T Consensus 584 ~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~E 663 (741)
T KOG4460|consen 584 EEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKE 663 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 111 VDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA-----EKKISDLSAKLEKLQKINDEQKSKIRKTERAL 181 (286)
Q Consensus 111 i~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~-----e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~l 181 (286)
+..+...++.|..-|+.+++...+++.-+....+....- +.....+++.+.+|-....++-++...++...
T Consensus 664 lq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~~v 739 (741)
T KOG4460|consen 664 LQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYILSAYQRKCIQSILKELGEHIREMVKQVKDIRNHV 739 (741)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 473
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=31.21 E-value=4.6e+02 Score=24.86 Aligned_cols=163 Identities=16% Similarity=0.195 Sum_probs=0.0
Q ss_pred cccccCCCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------
Q 023185 33 TASDAVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE--------- 103 (286)
Q Consensus 33 ~~~~~~~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl--------- 103 (286)
++..++...-+...+..++..-..|..+..+....=+.+--.+...+.++.+..++|..|.....-+-..+
T Consensus 96 ~a~e~~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAi 175 (330)
T KOG2991|consen 96 QALEGKYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAI 175 (330)
T ss_pred HHhcCcccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHH
Q ss_pred ---hHHHHHHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHH
Q 023185 104 ---TLNAAEQVDKAHARADELEK--------------------------------------QIDNLKKESEKQQKEKEAL 142 (286)
Q Consensus 104 ---~~~~~eqi~ka~~Ri~eLek--------------------------------------~Ie~Lk~eie~~~~kk~eL 142 (286)
=.-....+....+++.+++. -|..|.-++.-++..-++|
T Consensus 176 nl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seEl 255 (330)
T KOG2991|consen 176 NLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEEL 255 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185 143 EARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195 (286)
Q Consensus 143 Ea~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea 195 (286)
.+...++-+-+.++..-++.++..+-=.+..+...++.++.++.....+..-+
T Consensus 256 kssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav 308 (330)
T KOG2991|consen 256 KSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAV 308 (330)
T ss_pred HHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 474
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=31.16 E-value=2.5e+02 Score=21.78 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 84 DKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (286)
Q Consensus 84 e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~L 163 (286)
.++.-+..|...|+.++..+ ...........+++..|..+..+...+..+....+++...++.--.++...+...
T Consensus 5 ~le~al~rL~~aid~LE~~v-----~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAV-----DRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH
Q 023185 164 QKIND 168 (286)
Q Consensus 164 ek~~~ 168 (286)
-..+.
T Consensus 80 ~e~Ir 84 (89)
T PF13747_consen 80 IETIR 84 (89)
T ss_pred HHHHH
No 475
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.12 E-value=3.7e+02 Score=23.67 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-----TLNAAEQVDKAHARAD 119 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-----~~~~~eqi~ka~~Ri~ 119 (286)
.....++.++..|+..++.....+..+...|... +.-+.-+.+-..+..++..++.++ ++.....-+- .++.
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~-~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp--~~i~ 138 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA-KKGREESEEREELLEELEELKKELKELKKELEKYSENDP--EKIE 138 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 120 ELEKQIDNLKKESEKQQKEKEALEARAIE 148 (286)
Q Consensus 120 eLek~Ie~Lk~eie~~~~kk~eLEa~~~e 148 (286)
.+++.+..++.....--.....|.+....
T Consensus 139 ~~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 139 KLKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
No 476
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=30.42 E-value=2.4e+02 Score=21.27 Aligned_cols=73 Identities=18% Similarity=0.227 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (286)
Q Consensus 68 L~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~ 140 (286)
+++.+..|+.+.++-..+.-.|.-|+..+...-.....+.-.+--.....+..|.+.+..++..+.......+
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 477
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=30.15 E-value=9.1e+02 Score=27.91 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADE-- 120 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~e-- 120 (286)
+......++..+.+.+..++....+..+++..+...++.|.++...+..++..+... ..+ ......+.+-..+++.
T Consensus 214 ~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~-~~l-~~e~~~l~~~~~~l~~~i 291 (1294)
T KOG0962|consen 214 LKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQV-KLL-DSEHKNLKKQISRLREKI 291 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhhc
Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 121 ----------LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 121 ----------Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
+.+..............+...++-+...++.....+......+.-.....+....-.+.........+..
T Consensus 292 ~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~ 371 (1294)
T KOG0962|consen 292 LKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQE 371 (1294)
T ss_pred ccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 023185 191 AKFE 194 (286)
Q Consensus 191 le~E 194 (286)
+..+
T Consensus 372 ~~~~ 375 (1294)
T KOG0962|consen 372 LAHQ 375 (1294)
T ss_pred HHHH
No 478
>PRK00106 hypothetical protein; Provisional
Probab=29.91 E-value=6.5e+02 Score=26.10 Aligned_cols=152 Identities=13% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH---HH-HHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 023185 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSL---QK-ELSSLQKKETLNAAEQVDKAHARADELE 122 (286)
Q Consensus 47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~L---q~-eI~~~qkkl~~~~~eqi~ka~~Ri~eLe 122 (286)
+.+.+.+-..+..+...-.++.. .....+.+.++.....++..- +. ++..-+..+ ...++.+.+-...+...+
T Consensus 48 leeAe~eAe~I~keA~~EAke~~--ke~~lEaeeEi~~~R~ElEkel~eEr~rL~qrE~rL-~qREE~LekRee~LekrE 124 (535)
T PRK00106 48 RGKAERDAEHIKKTAKRESKALK--KELLLEAKEEARKYREEIEQEFKSERQELKQIESRL-TERATSLDRKDENLSSKE 124 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 023185 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKE 201 (286)
Q Consensus 123 k~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~q 201 (286)
+.++...+.++......+.+......+.......-..+..|....+...-.-.--+.....+-..+.+.+.+++..+.+
T Consensus 125 ~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~~~~~~~~~~i~~~e~~a~~~a~~ 203 (535)
T PRK00106 125 KTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETENKLTHEIATRIREAEREVKDRSDK 203 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=29.91 E-value=2.9e+02 Score=24.44 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (286)
Q Consensus 51 k~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkk 102 (286)
+.-...++...+.+..-++.+...|.+.++...+++.++..|+.+|...+++
T Consensus 124 ~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 124 KEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 480
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=29.52 E-value=3.6e+02 Score=23.87 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023185 60 HIDEKTQELKGKDEVVAQKEKAIQD-----KSERIVSLQKELSSLQKKETLNAAEQVDKAHARA 118 (286)
Q Consensus 60 ~i~e~~~eL~~~d~~I~q~e~~i~e-----~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri 118 (286)
....+..+|..++.+|+.+++.++. ...+|..|..+++..-++-+.-.-+-......++
T Consensus 106 eL~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~emeLyyecMkkL 169 (181)
T PF04645_consen 106 ELKSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIREMELYYECMKKL 169 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=29.44 E-value=3.9e+02 Score=23.48 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 023185 81 AIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISD-LSAK 159 (286)
Q Consensus 81 ~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~e-l~~k 159 (286)
.+..+-+.+..+-+.+..+-...-.-.-++...++....++...|..|+.++..+......+..+...+++...+ .+..
T Consensus 85 LL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~~e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~ 164 (189)
T PF10211_consen 85 LLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQAEQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEE 164 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 160 LEKLQKINDEQKSKIRKTERALKVA 184 (286)
Q Consensus 160 ~~~Lek~~~Eqk~~i~~lE~~lq~~ 184 (286)
.........-.+...+++...++.+
T Consensus 165 ~k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 165 EKKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
No 482
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=29.39 E-value=4.6e+02 Score=24.28 Aligned_cols=142 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 023185 48 DQLKSKIRSLESHIDEKTQELKGK--DEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (286)
Q Consensus 48 ~elk~ki~eLes~i~e~~~eL~~~--d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~I 125 (286)
++.+.++.+.......-...-... +..+......+..+..++..++.+++...
T Consensus 108 ~eI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~------------------------- 162 (301)
T PF14362_consen 108 KEIDQKLDEIRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQ------------------------- 162 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
Q ss_pred HHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 126 DNLKKESEK------------QQKEKEALEARAIEAEKKISDLSAKLEKLQ----KINDEQKSKIRKTERALKVAEEEMM 189 (286)
Q Consensus 126 e~Lk~eie~------------~~~kk~eLEa~~~e~e~k~~el~~k~~~Le----k~~~Eqk~~i~~lE~~lq~~Eeei~ 189 (286)
..+..+..- -+.+...+.....++....+..+.....+. ..........+....+......-..
T Consensus 163 ~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~ 242 (301)
T PF14362_consen 163 QEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALDAQIAARKARLDEARQAKVAEFQAIISAND 242 (301)
T ss_pred HHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHhhccCC
Q ss_pred HHHHHhhhhhHHHhhhhccCCchhH
Q 023185 190 RAKFEATSRSKELTEVHSAWLPPWL 214 (286)
Q Consensus 190 kle~Ea~~~a~ql~~~~g~~l~Pwl 214 (286)
-+-.+......-.....+.|+|.|+
T Consensus 243 G~l~R~~Al~~L~~~~~~~~~~~~~ 267 (301)
T PF14362_consen 243 GFLARLEALWELTKEDPSALLASLF 267 (301)
T ss_pred CHHHHHHHHHHHHhCCCcHHHHHHH
No 483
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=29.02 E-value=2.6e+02 Score=21.16 Aligned_cols=111 Identities=12% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 023185 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKS-----ERIVSLQKELSSLQKKETLNAAEQVDKAHARADELE 122 (286)
Q Consensus 48 ~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~-----~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLe 122 (286)
+++...+............+|..+...+......+.... ..+.....-+..+. .++..++
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~---------------~~i~~~~ 65 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALE---------------QAIQQQQ 65 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH---------------HHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSK 173 (286)
Q Consensus 123 k~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~ 173 (286)
..|..+..+++...........+...++............-....++..-+
T Consensus 66 ~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~lD 116 (123)
T PF02050_consen 66 QELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQQEEERREQKELD 116 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=28.80 E-value=4.2e+02 Score=23.53 Aligned_cols=149 Identities=26% Similarity=0.315 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eL 121 (286)
|+-+=|..++.||..||=+.......++.+......-...+..-...-.....+...-. .+...++..|+.|-.-|
T Consensus 1 AvisALK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~----~dl~~qL~aAEtRCslL 76 (178)
T PF14073_consen 1 AVISALKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQN----QDLSSQLSAAETRCSLL 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhcc----HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKK----ISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (286)
Q Consensus 122 ek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k----~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~E 194 (286)
+++++..++=+..-..+....-.+...++.. ..++.++.+.|+.--.++-+.-..-.-+...+..--.++..+
T Consensus 77 EKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eE 153 (178)
T PF14073_consen 77 EKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEE 153 (178)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 485
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=28.64 E-value=9.6e+02 Score=27.72 Aligned_cols=230 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~ 124 (286)
.++...+..+..+++-++.. ..+...|.+.+..+.....+...+++++...++.+ ..+...-..++.+..+
T Consensus 199 ~evk~~~~~l~~lk~~K~~~----e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i-----~ei~~~~~el~k~~~~ 269 (1294)
T KOG0962|consen 199 QEVKTKKQELEHLKTLKERA----EVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKI-----EEIEKSLKELEKLLKQ 269 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 023185 125 IDNLKKESEKQQKEKEALEARAI-EAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSRSKELT 203 (286)
Q Consensus 125 Ie~Lk~eie~~~~kk~eLEa~~~-e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~a~ql~ 203 (286)
+..+..+...+......+..... --......+......-+....+....+..++..+..++.+...+...-+..-..+.
T Consensus 270 ~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~ 349 (1294)
T KOG0962|consen 270 VKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQS 349 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh-ccCCchhHHHHHHHHHHHHhhhhhhhCcchhHHHHHHHHHhHHhhhhhchhhHHhhhhhhccCcCchHHHHHHHHH
Q 023185 204 EVH-SAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAVSSFSYSSIPEILKYIEE 282 (286)
Q Consensus 204 ~~~-g~~l~Pwla~~~~~~~~~~~~~w~~hg~p~~~~~~~~~~~~~~~~~~~~~ph~~~~~~~~~~~~~~~~~~~~~~~~ 282 (286)
... +.-..--+-.+...+-..-..+++--+.|-+..-....-.=..-...=..--.++++...+=-|.-...+++.+.+
T Consensus 350 ~lq~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~q~~k~~~~~~s~~~~~~~~ 429 (1294)
T KOG0962|consen 350 ELQAEAEFHQELKRQRDSLIQELAHQYQLDSVESLEFMAEVKKDFRNLILERFGGLEDDIKQRKKDIAELETNALDLIKE 429 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred h
Q 023185 283 L 283 (286)
Q Consensus 283 ~ 283 (286)
+
T Consensus 430 ~ 430 (1294)
T KOG0962|consen 430 I 430 (1294)
T ss_pred H
No 486
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=28.59 E-value=5.1e+02 Score=24.48 Aligned_cols=105 Identities=21% Similarity=0.297 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADEL 121 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eL 121 (286)
++-..|..++-++.=|.+..+++.......+ .-...+.+.......+.....+++..+ ..+...
T Consensus 156 ~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~-~~~~~e~eke~~~r~l~~~~~ELe~~~---------------EeL~~~ 219 (269)
T PF05278_consen 156 ATLKDLESAKVKVDWLRSKLEEILEAKEIYD-QHETREEEKEEKDRKLELKKEELEELE---------------EELKQK 219 (269)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162 (286)
Q Consensus 122 ek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~ 162 (286)
++.+..++..+.+++.+...|+.+...+.+.+..+.+++..
T Consensus 220 Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 220 EKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=28.54 E-value=7.2e+02 Score=26.18 Aligned_cols=92 Identities=12% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKE 140 (286)
Q Consensus 61 i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~ 140 (286)
.+.+..+|..+|..- -..|-+....+..+...|+.+. .++.+....+......+..+..+++.++.+-.
T Consensus 7 ~~~L~~eL~~le~~n---i~~l~~s~~~v~~l~~~ld~a~--------~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~ 75 (701)
T PF09763_consen 7 EERLSKELSALEAAN---IHSLLESEKQVNSLMEYLDEAL--------AECDELESWLSLYDVELNSVRDDIEYIESQNN 75 (701)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023185 141 ALEARAIEAEKKISDLSAKLEKL 163 (286)
Q Consensus 141 eLEa~~~e~e~k~~el~~k~~~L 163 (286)
-|+-.........++++..+..+
T Consensus 76 ~Lqvq~~N~k~L~~eL~~Ll~~l 98 (701)
T PF09763_consen 76 GLQVQSANQKLLLNELENLLDTL 98 (701)
T ss_pred chhhHHHHHHHHHHHHHHHHHhc
No 488
>PHA02621 agnoprotein; Provisional
Probab=28.49 E-value=56 Score=23.90 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHhhhhhcccC
Q 023185 2 AASKLVIFSLFFALILTAADVSIQG 26 (286)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (286)
++-|+|+|++=|+|-||.++.++|+
T Consensus 24 raqri~if~le~ll~fc~gedsvdg 48 (68)
T PHA02621 24 RAQRIFIFILELLLDFCRGEDSVDG 48 (68)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccc
No 489
>PF15456 Uds1: Up-regulated During Septation
Probab=28.41 E-value=3.4e+02 Score=22.44 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHH
Q 023185 115 HARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL------------------SAKLEKLQKINDEQKSKIRK 176 (286)
Q Consensus 115 ~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el------------------~~k~~~Lek~~~Eqk~~i~~ 176 (286)
...+++|++++..|...++..+.+.. |+.+.+++-..+..+ ...+.......++...++..
T Consensus 21 ~eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~ 99 (124)
T PF15456_consen 21 FEEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWK 99 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 023185 177 TERALKVAEEEMMR 190 (286)
Q Consensus 177 lE~~lq~~Eeei~k 190 (286)
++.....+...+.+
T Consensus 100 le~R~~~~~~rLLe 113 (124)
T PF15456_consen 100 LENRLAEVRQRLLE 113 (124)
T ss_pred HHHHHHHHHHHHHH
No 490
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=28.33 E-value=2e+02 Score=31.28 Aligned_cols=59 Identities=22% Similarity=0.358 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 78 KEKAIQDKSERIVSLQKELSSLQKKE------TLNAAEQVDKAHARADELEKQIDNLKKESEKQQ 136 (286)
Q Consensus 78 ~e~~i~e~~~eI~~Lq~eI~~~qkkl------~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~ 136 (286)
.++++..++.++..++.+|+.+++++ ...-.+-+.+-+.++.+++.++..+++.+..+.
T Consensus 809 ~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~l~ 873 (874)
T PRK05729 809 VEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLARLK 873 (874)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 491
>smart00338 BRLZ basic region leucin zipper.
Probab=28.31 E-value=2.2e+02 Score=20.21 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAI 82 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i 82 (286)
...+.++..++..|+.+.+.+..++..+..++..+...+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 492
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=28.20 E-value=1.9e+02 Score=19.58 Aligned_cols=37 Identities=30% Similarity=0.473 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEK 80 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~ 80 (286)
..+++++++-+=.|+..|.+.+.-+...+..|++..+
T Consensus 3 k~~ieelkqll~rle~eirett~sl~ninksidq~dk 39 (46)
T PF08181_consen 3 KKKIEELKQLLWRLENEIRETTDSLRNINKSIDQYDK 39 (46)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
No 493
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.18 E-value=2.7e+02 Score=21.16 Aligned_cols=61 Identities=20% Similarity=0.339 Sum_probs=0.0
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHhhHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 36 DAVDSSPLKIELDQLKSKIRSLESHIDE---KTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (286)
Q Consensus 36 ~~~~~~~l~~el~elk~ki~eLes~i~e---~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI 96 (286)
...++-.+....+.++.++....+.+.+ +..-+.+-..+|..++..+..+..-+..+.+.+
T Consensus 19 ~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 19 PPLSSKDLDTATGSLKHKLQKARAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 494
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=28.13 E-value=4.5e+02 Score=23.67 Aligned_cols=88 Identities=13% Similarity=0.211 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 023185 67 ELKGKDEVVAQKEKAIQDKSERIVS----LQKELSSLQKKETLNAAEQVDKAHARADELEK-------QIDNLKKESEKQ 135 (286)
Q Consensus 67 eL~~~d~~I~q~e~~i~e~~~eI~~----Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek-------~Ie~Lk~eie~~ 135 (286)
+...+..+|.+++..|...+..... ..+...-++ ..-+.-+..-+..+++++. -+..++.+++.+
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk----~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~i 172 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVK----REFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTI 172 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHH----HHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023185 136 QKEKEALEARAIEAEKKISDLSA 158 (286)
Q Consensus 136 ~~kk~eLEa~~~e~e~k~~el~~ 158 (286)
......||.....-...+..|+.
T Consensus 173 e~QV~~Le~~L~~k~~eL~~L~q 195 (195)
T PF12761_consen 173 EEQVDGLESHLSSKKQELQQLRQ 195 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
No 495
>PHA03011 hypothetical protein; Provisional
Probab=28.07 E-value=3.3e+02 Score=22.13 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=0.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 38 VDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (286)
Q Consensus 38 ~~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~ 97 (286)
+|-.++...++++..+-++|-.+-.-+..+++.+.--|...-..|--+..+|+.|...|.
T Consensus 57 GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~nia 116 (120)
T PHA03011 57 GDINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIA 116 (120)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
No 496
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=27.90 E-value=5e+02 Score=24.21 Aligned_cols=118 Identities=16% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARA 118 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri 118 (286)
+...+..++++.+..+..++.+........+ ..++...+..+...+.+++..+... .|.
T Consensus 75 d~~~~~~~l~~~~a~l~~~~~~l~~~~~~~~---------~~~i~~~~~~l~~ak~~l~~a~~~~------------~r~ 133 (331)
T PRK03598 75 DAAPYENALMQAKANVSVAQAQLDLMLAGYR---------DEEIAQARAAVKQAQAAYDYAQNFY------------NRQ 133 (331)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHccCC---------HHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
Q ss_pred HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 119 DELEK-------QIDNLKKESEKQQKEKEALEARAIEAE-----KKISDLSAKLEKLQKINDEQKSKIRKT 177 (286)
Q Consensus 119 ~eLek-------~Ie~Lk~eie~~~~kk~eLEa~~~e~e-----~k~~el~~k~~~Lek~~~Eqk~~i~~l 177 (286)
+.|-+ .++..+.+...........+.....+. ..+..++..+...+.....-+..++.+
T Consensus 134 ~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~l~~~ 204 (331)
T PRK03598 134 QGLWKSRTISANDLENARSSRDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELNLQDT 204 (331)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 497
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=27.88 E-value=1.8e+02 Score=25.06 Aligned_cols=37 Identities=38% Similarity=0.443 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (286)
Q Consensus 121 Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~ 157 (286)
+.+.|++++++++.++.+.++|+.++.+.+.....++
T Consensus 71 ~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~ 107 (157)
T PF14235_consen 71 YQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHAL 107 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
No 498
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.86 E-value=2.4e+02 Score=20.54 Aligned_cols=48 Identities=29% Similarity=0.439 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSK 173 (286)
Q Consensus 126 e~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~ 173 (286)
..+..++...+...-..+.+..+.+.+-.++...+..|.+.+.+....
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 499
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=27.73 E-value=2.1e+02 Score=29.93 Aligned_cols=53 Identities=25% Similarity=0.413 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 48 ~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.+++..+.+|+..+...-.+|...+..+.....++..+...|++|+++++..+
T Consensus 20 ~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r 72 (732)
T KOG0614|consen 20 RELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLR 72 (732)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhh
No 500
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=27.72 E-value=7.2e+02 Score=25.93 Aligned_cols=155 Identities=18% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE--TLNAAEQVDKAHA 116 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl--~~~~~eqi~ka~~ 116 (286)
|-+..+-++..++.+|..+=.....=..--+.......-+-..+......-..|..+|+..+..- .-..--.+.+-++
T Consensus 275 eld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~ 354 (570)
T COG4477 275 ELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEK 354 (570)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKF 193 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~ 193 (286)
++.++...+..+...++....-=-.+.....++++.+...+....++........+.=-+....+......+....+
T Consensus 355 eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR 431 (570)
T COG4477 355 ELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKR 431 (570)
T ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!