Query 023185
Match_columns 286
No_of_seqs 123 out of 129
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:46:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 98.4 0.00024 8.1E-09 64.1 26.3 17 207-223 170-186 (256)
2 1c1g_A Tropomyosin; contractIl 98.3 0.00093 3.2E-08 57.5 26.2 26 46-71 7-32 (284)
3 1c1g_A Tropomyosin; contractIl 98.3 0.0014 4.7E-08 56.4 26.2 7 51-57 19-25 (284)
4 3na7_A HP0958; flagellar bioge 97.9 0.0021 7.3E-08 57.8 21.4 54 48-101 28-81 (256)
5 2dfs_A Myosin-5A; myosin-V, in 97.3 0.01 3.4E-07 63.7 18.6 131 45-186 921-1051(1080)
6 1i84_S Smooth muscle myosin he 97.2 0.00084 2.9E-08 72.4 9.9 49 39-87 858-906 (1184)
7 1i84_S Smooth muscle myosin he 97.2 0.0016 5.3E-08 70.3 11.5 53 44-96 856-908 (1184)
8 2v71_A Nuclear distribution pr 97.1 0.11 3.9E-06 44.9 20.9 118 45-165 24-144 (189)
9 3vkg_A Dynein heavy chain, cyt 96.9 0.14 4.6E-06 60.5 24.6 30 213-242 2081-2110(3245)
10 2fxo_A Myosin heavy chain, car 96.6 0.22 7.4E-06 40.3 19.8 111 60-178 14-124 (129)
11 3u1c_A Tropomyosin alpha-1 cha 96.5 0.16 5.6E-06 39.4 15.2 51 47-97 4-54 (101)
12 3oja_B Anopheles plasmodium-re 96.5 0.14 4.7E-06 50.3 17.9 36 156-191 542-577 (597)
13 3vkg_A Dynein heavy chain, cyt 96.3 0.58 2E-05 55.3 23.8 34 226-259 2159-2204(3245)
14 3o0z_A RHO-associated protein 96.2 0.47 1.6E-05 40.3 21.1 41 116-156 90-130 (168)
15 2dfs_A Myosin-5A; myosin-V, in 96.2 0.29 1E-05 52.4 19.8 27 42-68 925-951 (1080)
16 3u59_A Tropomyosin beta chain; 96.1 0.33 1.1E-05 37.6 14.7 53 47-99 4-56 (101)
17 2v71_A Nuclear distribution pr 96.0 0.66 2.3E-05 40.1 21.4 55 43-100 15-69 (189)
18 3u1c_A Tropomyosin alpha-1 cha 95.8 0.48 1.7E-05 36.7 16.1 61 41-101 5-65 (101)
19 3oja_B Anopheles plasmodium-re 95.8 0.18 6.3E-06 49.3 14.8 73 126-198 505-577 (597)
20 3tnu_A Keratin, type I cytoske 95.6 0.4 1.4E-05 38.7 13.8 95 45-143 17-111 (131)
21 3tnu_B Keratin, type II cytosk 95.4 0.43 1.5E-05 38.4 13.2 23 113-135 79-101 (129)
22 3o0z_A RHO-associated protein 95.2 1.2 4.2E-05 37.7 23.1 49 52-100 6-54 (168)
23 1ic2_A Tropomyosin alpha chain 95.2 0.4 1.4E-05 35.6 11.5 58 43-100 4-61 (81)
24 2eqb_B RAB guanine nucleotide 94.9 0.97 3.3E-05 35.0 13.6 61 43-103 3-63 (97)
25 2efr_A General control protein 94.9 1.5 5.1E-05 36.7 20.8 116 71-195 26-142 (155)
26 1ic2_A Tropomyosin alpha chain 94.8 0.38 1.3E-05 35.7 10.4 53 48-100 2-54 (81)
27 3u59_A Tropomyosin beta chain; 94.8 1.1 3.6E-05 34.6 15.4 60 41-100 5-64 (101)
28 3nmd_A CGMP dependent protein 94.6 0.1 3.5E-06 38.4 6.7 47 54-100 21-67 (72)
29 3ol1_A Vimentin; structural ge 94.2 1.7 5.6E-05 34.6 14.5 64 37-100 12-75 (119)
30 2efr_A General control protein 94.2 2.1 7.3E-05 35.8 24.3 21 114-134 40-60 (155)
31 3qh9_A Liprin-beta-2; coiled-c 94.1 0.23 7.8E-06 37.2 7.5 59 39-97 20-78 (81)
32 3hnw_A Uncharacterized protein 93.6 0.47 1.6E-05 38.9 9.6 56 45-100 75-130 (138)
33 1l8d_A DNA double-strand break 93.6 1.9 6.6E-05 33.2 13.1 33 69-101 13-45 (112)
34 2v4h_A NF-kappa-B essential mo 93.0 2 6.9E-05 33.9 11.7 18 46-63 25-42 (110)
35 3tnu_A Keratin, type I cytoske 91.9 4.1 0.00014 32.6 13.2 25 52-76 17-41 (131)
36 1m1j_B Fibrinogen beta chain; 91.5 5.9 0.0002 38.6 15.7 15 154-168 178-192 (464)
37 3ghg_A Fibrinogen alpha chain; 91.5 3.7 0.00013 40.5 14.1 38 120-157 114-151 (562)
38 1deq_A Fibrinogen (alpha chain 91.1 6.9 0.00024 37.1 15.1 23 124-146 135-157 (390)
39 3swk_A Vimentin; cytoskeleton, 90.9 3.8 0.00013 30.7 11.0 52 48-99 3-54 (86)
40 1jcd_A Major outer membrane li 90.8 1.5 5.1E-05 30.1 7.7 13 107-119 37-49 (52)
41 3a7p_A Autophagy protein 16; c 90.4 6.9 0.00024 32.5 13.3 61 43-103 59-119 (152)
42 3ghg_A Fibrinogen alpha chain; 90.0 4.3 0.00015 40.1 13.1 44 140-183 113-156 (562)
43 3mq9_A Bone marrow stromal ant 90.0 13 0.00043 35.2 16.4 72 117-191 398-469 (471)
44 2v4h_A NF-kappa-B essential mo 89.4 6.7 0.00023 30.9 12.8 31 69-99 27-57 (110)
45 3jsv_C NF-kappa-B essential mo 89.1 4.2 0.00014 31.2 9.8 63 68-142 4-66 (94)
46 2v66_B Nuclear distribution pr 88.7 7.5 0.00026 30.7 16.8 35 116-150 56-90 (111)
47 2e7s_A RAB guanine nucleotide 88.2 2 6.8E-05 35.2 8.0 28 72-99 31-58 (135)
48 2ocy_A RAB guanine nucleotide 88.0 11 0.00036 31.5 19.5 22 125-149 81-102 (154)
49 3iox_A AGI/II, PA; alpha helix 87.7 22 0.00076 34.8 16.5 99 86-191 8-106 (497)
50 3efg_A Protein SLYX homolog; x 87.3 2.1 7.2E-05 31.7 7.0 53 140-192 10-62 (78)
51 2b9c_A Striated-muscle alpha t 86.9 12 0.0004 30.8 14.2 25 56-80 7-31 (147)
52 3hnw_A Uncharacterized protein 85.5 13 0.00046 30.1 14.2 11 48-58 35-45 (138)
53 3a7p_A Autophagy protein 16; c 84.9 16 0.00053 30.4 11.9 59 43-101 66-124 (152)
54 2ocy_A RAB guanine nucleotide 84.7 16 0.00055 30.4 20.4 46 152-197 95-140 (154)
55 3htk_A Structural maintenance 84.5 5.7 0.0002 27.2 7.8 54 45-98 5-58 (60)
56 1zxa_A CGMP-dependent protein 83.3 1.8 6E-05 31.3 4.7 41 61-101 13-53 (67)
57 2v66_B Nuclear distribution pr 82.1 17 0.00057 28.7 16.5 36 127-162 53-88 (111)
58 3mq9_A Bone marrow stromal ant 81.9 35 0.0012 32.1 15.7 16 88-103 398-413 (471)
59 3nmd_A CGMP dependent protein 80.5 6 0.00021 28.9 6.8 28 69-96 29-56 (72)
60 3oja_A Leucine-rich immune mol 80.1 41 0.0014 31.8 16.4 56 139-194 423-478 (487)
61 3oja_A Leucine-rich immune mol 78.9 44 0.0015 31.5 16.0 19 70-88 371-389 (487)
62 3i00_A HIP-I, huntingtin-inter 78.2 12 0.0004 29.9 8.5 26 75-100 35-60 (120)
63 1x8y_A Lamin A/C; structural p 77.6 19 0.00066 26.7 10.0 19 117-135 36-54 (86)
64 2jee_A YIIU; FTSZ, septum, coi 77.2 20 0.00069 26.7 11.3 26 75-100 8-33 (81)
65 3jsv_C NF-kappa-B essential mo 77.1 22 0.00076 27.1 10.0 26 68-93 11-36 (94)
66 1m1j_B Fibrinogen beta chain; 77.1 56 0.0019 31.7 17.1 24 160-183 170-193 (464)
67 2jee_A YIIU; FTSZ, septum, coi 76.6 21 0.00072 26.6 11.0 9 49-57 10-18 (81)
68 2e7s_A RAB guanine nucleotide 76.2 23 0.0008 28.8 9.8 10 140-149 81-90 (135)
69 3efg_A Protein SLYX homolog; x 75.6 7.7 0.00026 28.6 6.3 37 43-79 12-48 (78)
70 2eqb_B RAB guanine nucleotide 75.0 26 0.0009 26.9 14.7 34 67-100 6-39 (97)
71 3iox_A AGI/II, PA; alpha helix 75.0 66 0.0022 31.5 16.8 98 91-196 6-104 (497)
72 1deq_A Fibrinogen (alpha chain 74.5 59 0.002 30.8 17.2 40 121-160 118-157 (390)
73 2nrj_A HBL B protein; enteroto 74.5 54 0.0019 30.3 13.5 64 40-103 118-192 (346)
74 2qih_A Protein USPA1; trimeric 74.3 34 0.0012 28.0 17.8 84 51-135 39-122 (157)
75 3swy_A Cyclic nucleotide-gated 73.5 15 0.00052 24.5 6.6 33 71-103 3-35 (46)
76 2oto_A M protein; helical coil 72.8 37 0.0013 27.6 20.6 51 49-99 26-76 (155)
77 2yy0_A C-MYC-binding protein; 72.8 2.9 9.8E-05 28.7 3.0 32 38-69 19-50 (53)
78 2pms_C Pneumococcal surface pr 72.2 15 0.0005 29.6 7.5 23 50-72 11-33 (125)
79 2xdj_A Uncharacterized protein 72.2 28 0.00094 25.9 8.9 20 80-99 27-46 (83)
80 3iv1_A Tumor susceptibility ge 71.7 28 0.00095 25.7 9.1 58 43-100 16-73 (78)
81 2w83_C C-JUN-amino-terminal ki 71.1 28 0.00097 25.6 10.3 69 120-188 6-74 (77)
82 2l5g_B Putative uncharacterize 71.0 7.6 0.00026 25.4 4.6 26 63-88 6-31 (42)
83 1m1j_C Fibrinogen gamma chain; 70.6 63 0.0021 30.8 12.9 27 121-147 89-115 (409)
84 2i1j_A Moesin; FERM, coiled-co 70.5 7 0.00024 38.9 6.5 22 79-100 334-355 (575)
85 3mq7_A Bone marrow stromal ant 70.4 38 0.0013 26.9 12.9 31 71-101 30-60 (121)
86 1lwu_C Fibrinogen gamma chain; 70.4 11 0.00036 35.1 7.3 32 46-77 6-37 (323)
87 1m1j_A Fibrinogen alpha subuni 69.8 84 0.0029 30.5 14.2 57 43-99 56-112 (491)
88 2lw1_A ABC transporter ATP-bin 69.5 19 0.00065 26.7 7.3 20 42-61 19-38 (89)
89 2lw1_A ABC transporter ATP-bin 69.3 32 0.0011 25.4 8.8 10 54-63 24-33 (89)
90 3swf_A CGMP-gated cation chann 69.0 31 0.0011 25.2 8.4 48 70-128 4-51 (74)
91 1m1j_A Fibrinogen alpha subuni 68.8 88 0.003 30.4 16.0 44 140-183 114-157 (491)
92 2p22_C Protein SRN2; endosome, 68.2 56 0.0019 27.9 13.7 19 215-234 171-189 (192)
93 1gk4_A Vimentin; intermediate 67.6 34 0.0012 25.1 12.7 20 116-135 33-52 (84)
94 4emc_A Monopolin complex subun 66.8 14 0.00048 31.7 6.7 49 43-91 11-59 (190)
95 3uux_B Mitochondrial division 66.4 71 0.0024 28.4 11.6 71 124-194 150-220 (242)
96 2xdj_A Uncharacterized protein 66.2 38 0.0013 25.1 10.1 48 53-100 7-54 (83)
97 3q8t_A Beclin-1; autophagy, AT 65.7 41 0.0014 25.4 14.5 69 123-191 11-79 (96)
98 2i1j_A Moesin; FERM, coiled-co 65.6 13 0.00044 37.0 7.3 113 60-187 336-448 (575)
99 3qne_A Seryl-tRNA synthetase, 64.6 33 0.0011 33.5 9.8 37 65-101 32-68 (485)
100 2xnx_M M protein, M1-BC1; cell 64.2 12 0.0004 30.9 5.5 43 118-160 61-103 (146)
101 3i00_A HIP-I, huntingtin-inter 64.0 52 0.0018 26.0 11.4 14 87-100 15-28 (120)
102 1lwu_C Fibrinogen gamma chain; 63.1 19 0.00063 33.4 7.4 24 74-97 13-36 (323)
103 2dq0_A Seryl-tRNA synthetase; 62.2 36 0.0012 32.7 9.5 37 65-101 30-66 (455)
104 3c9i_A Tail needle protein GP2 60.2 87 0.003 27.3 14.9 68 55-123 80-147 (242)
105 2a01_A Apolipoprotein A-I; fou 60.0 54 0.0019 28.6 9.6 158 125-283 50-214 (243)
106 4etp_A Kinesin-like protein KA 59.3 16 0.00055 34.6 6.4 12 87-98 45-56 (403)
107 2yko_A LINE-1 ORF1P; RNA-bindi 59.0 21 0.00071 31.7 6.6 34 43-76 4-37 (233)
108 4etp_A Kinesin-like protein KA 58.6 28 0.00095 32.9 7.9 32 69-100 6-37 (403)
109 3iv1_A Tumor susceptibility ge 58.5 52 0.0018 24.2 10.0 58 121-178 16-73 (78)
110 2yo3_A General control protein 58.5 54 0.0018 29.6 9.3 44 58-101 215-258 (268)
111 3trt_A Vimentin; cytoskeleton, 55.9 44 0.0015 23.7 7.0 24 75-98 51-74 (77)
112 4emc_A Monopolin complex subun 55.6 90 0.0031 26.7 9.8 30 69-98 16-45 (190)
113 3q8t_A Beclin-1; autophagy, AT 55.5 64 0.0022 24.3 15.7 67 125-191 27-93 (96)
114 2w83_C C-JUN-amino-terminal ki 55.2 59 0.002 23.8 9.1 29 72-100 29-57 (77)
115 1x8y_A Lamin A/C; structural p 55.0 61 0.0021 23.9 7.8 21 46-66 4-24 (86)
116 1d7m_A Cortexillin I; coiled-c 54.4 68 0.0023 24.3 16.4 67 117-190 26-92 (101)
117 4h22_A Leucine-rich repeat fli 53.0 78 0.0027 24.5 8.3 53 48-100 19-71 (103)
118 2xzr_A Immunoglobulin-binding 52.9 76 0.0026 24.4 17.3 25 111-135 57-81 (114)
119 1m1j_C Fibrinogen gamma chain; 52.2 1.6E+02 0.0055 27.9 13.7 25 153-177 100-124 (409)
120 3htk_A Structural maintenance 51.9 51 0.0018 22.1 8.2 46 54-99 7-52 (60)
121 2xnx_M M protein, M1-BC1; cell 49.1 50 0.0017 27.2 6.8 11 124-134 88-98 (146)
122 1wle_A Seryl-tRNA synthetase; 49.1 1.6E+02 0.0054 28.7 11.7 25 166-190 124-148 (501)
123 1fxk_C Protein (prefoldin); ar 49.0 92 0.0031 24.2 12.6 43 104-148 85-127 (133)
124 3s4r_A Vimentin; alpha-helix, 46.9 89 0.003 23.4 9.5 10 125-134 79-88 (93)
125 2wq1_A General control protein 46.5 43 0.0015 20.6 4.6 25 76-100 3-27 (33)
126 1wle_A Seryl-tRNA synthetase; 46.5 1.5E+02 0.005 28.9 11.0 62 39-100 42-104 (501)
127 1go4_E MAD1 (mitotic arrest de 45.5 1E+02 0.0035 23.7 9.6 32 44-75 11-42 (100)
128 2oqq_A Transcription factor HY 45.2 54 0.0018 21.3 5.1 30 74-103 4-33 (42)
129 3lay_A Zinc resistance-associa 44.8 1.4E+02 0.0047 25.0 10.4 6 67-72 93-98 (175)
130 1ses_A Seryl-tRNA synthetase; 44.6 93 0.0032 29.4 9.1 32 66-97 28-59 (421)
131 1vcs_A Vesicle transport throu 44.2 1E+02 0.0035 23.3 8.0 59 70-135 35-93 (102)
132 2oqq_A Transcription factor HY 43.4 66 0.0022 20.9 6.2 30 139-168 5-34 (42)
133 3ol1_A Vimentin; structural ge 43.3 1.1E+02 0.0039 23.7 15.2 27 123-149 69-95 (119)
134 3s4r_A Vimentin; alpha-helix, 43.2 1E+02 0.0035 23.1 12.8 25 124-148 57-81 (93)
135 1fxk_A Prefoldin; archaeal pro 42.6 1E+02 0.0034 22.8 12.6 27 125-151 67-93 (107)
136 2qyw_A Vesicle transport throu 42.0 1.1E+02 0.0038 23.1 9.8 19 114-132 83-101 (102)
137 4gkw_A Spindle assembly abnorm 41.7 1.4E+02 0.0048 24.2 18.8 10 51-60 17-26 (167)
138 4gkw_A Spindle assembly abnorm 41.6 1.4E+02 0.0048 24.2 22.6 59 42-100 15-73 (167)
139 3lss_A Seryl-tRNA synthetase; 41.5 1.9E+02 0.0065 28.1 10.9 36 65-100 36-71 (484)
140 1ses_A Seryl-tRNA synthetase; 41.0 92 0.0031 29.5 8.5 19 117-135 72-90 (421)
141 2dq0_A Seryl-tRNA synthetase; 40.7 1.5E+02 0.0051 28.4 10.0 66 125-190 33-101 (455)
142 2zdi_C Prefoldin subunit alpha 39.8 1.4E+02 0.0049 23.7 8.5 30 116-145 105-134 (151)
143 2k48_A Nucleoprotein; viral pr 38.7 1.4E+02 0.0047 23.2 9.3 28 45-72 35-62 (107)
144 3trt_A Vimentin; cytoskeleton, 38.2 1E+02 0.0035 21.7 6.7 6 47-52 11-16 (77)
145 2w6a_A ARF GTPase-activating p 38.0 1E+02 0.0035 21.6 6.4 34 69-102 23-56 (63)
146 3qne_A Seryl-tRNA synthetase, 37.9 2E+02 0.0069 27.9 10.4 66 125-190 35-103 (485)
147 2lem_A Apolipoprotein A-I; lip 37.5 78 0.0027 27.0 6.8 59 207-268 137-195 (216)
148 2pms_C Pneumococcal surface pr 37.0 1.6E+02 0.0054 23.5 10.9 15 87-101 13-27 (125)
149 2l5g_B Putative uncharacterize 36.8 79 0.0027 20.6 4.9 20 81-100 10-29 (42)
150 2c5k_T Syntaxin TLG1, T-snare 36.5 93 0.0032 23.4 6.3 54 45-100 10-63 (95)
151 3he5_B Synzip2; heterodimeric 36.2 90 0.0031 20.4 5.7 24 75-98 26-49 (52)
152 3u06_A Protein claret segregat 35.7 47 0.0016 31.6 5.5 17 45-61 10-26 (412)
153 3a7o_A Autophagy protein 16; c 35.6 1.2E+02 0.0042 21.9 8.6 37 64-100 23-59 (75)
154 1kd8_A GABH AIV, GCN4 acid bas 35.1 63 0.0021 20.3 4.1 21 79-99 7-27 (36)
155 4hpq_C ATG17, KLTH0D15642P; au 34.9 3E+02 0.01 26.1 25.4 56 45-100 235-290 (413)
156 3vp9_A General transcriptional 34.8 84 0.0029 23.8 5.7 18 181-198 70-87 (92)
157 1d7m_A Cortexillin I; coiled-c 34.8 1.5E+02 0.005 22.5 16.1 38 62-99 21-58 (101)
158 3ghg_B Fibrinogen beta chain; 34.7 3.2E+02 0.011 26.4 14.1 25 158-182 163-187 (461)
159 1ci6_A Transcription factor AT 33.8 1.2E+02 0.004 21.0 6.4 30 70-99 27-56 (63)
160 1gd2_E Transcription factor PA 33.6 88 0.003 22.4 5.4 27 74-100 37-63 (70)
161 3etw_A Adhesin A; antiparallel 33.3 1.8E+02 0.0061 23.0 13.4 24 39-62 3-26 (119)
162 2xu6_A MDV1 coiled coil; prote 33.2 97 0.0033 22.4 5.5 19 46-64 22-40 (72)
163 4efa_G V-type proton ATPase su 33.2 1.4E+02 0.0047 23.5 7.0 26 223-248 86-111 (119)
164 1gk4_A Vimentin; intermediate 32.8 1.4E+02 0.0048 21.7 11.0 48 46-96 2-49 (84)
165 2dq3_A Seryl-tRNA synthetase; 32.8 42 0.0015 31.8 4.7 35 65-99 29-63 (425)
166 1cii_A Colicin IA; bacteriocin 32.4 3.7E+02 0.013 26.3 19.2 11 69-79 359-369 (602)
167 3a7o_A Autophagy protein 16; c 32.3 1.4E+02 0.0049 21.5 8.9 57 47-103 13-69 (75)
168 3htk_B Structural maintenance 32.3 1.3E+02 0.0045 21.1 9.8 11 117-127 54-64 (73)
169 2yy0_A C-MYC-binding protein; 32.2 96 0.0033 20.9 5.1 28 45-72 19-46 (53)
170 3mtu_A Tropomyosin alpha-1 cha 31.1 1E+02 0.0035 22.1 5.5 39 47-85 4-49 (75)
171 1t2k_D Cyclic-AMP-dependent tr 30.4 1.3E+02 0.0044 20.4 6.1 31 69-99 25-55 (61)
172 3etw_A Adhesin A; antiparallel 30.0 2E+02 0.007 22.6 14.8 14 87-100 9-22 (119)
173 3m0d_C TNF receptor-associated 29.7 1.4E+02 0.0048 20.7 8.7 51 47-97 8-58 (65)
174 1wt6_A Myotonin-protein kinase 29.5 1.7E+02 0.0059 21.6 8.4 22 114-135 50-71 (81)
175 3ni0_A Bone marrow stromal ant 29.4 1.9E+02 0.0065 22.1 11.7 29 72-100 24-52 (99)
176 3cvf_A Homer-3, homer protein 29.3 1.7E+02 0.0058 21.5 7.9 10 52-61 13-22 (79)
177 3r2p_A Apolipoprotein A-I; amp 29.1 2.4E+02 0.0082 23.2 10.4 34 234-267 143-176 (185)
178 2wuj_A Septum site-determining 28.8 73 0.0025 21.6 4.1 31 70-100 24-54 (57)
179 3onj_A T-snare VTI1; helix, HA 28.5 1.8E+02 0.0063 21.6 10.5 21 115-135 71-92 (97)
180 3ni0_A Bone marrow stromal ant 28.2 2E+02 0.0068 21.9 11.0 60 42-101 22-81 (99)
181 1avy_A Fibritin, gpwac M; bact 27.7 1.3E+02 0.0044 21.8 5.3 33 68-100 10-42 (74)
182 1buu_A Protein (mannose-bindin 27.5 53 0.0018 26.3 3.8 24 41-64 19-42 (168)
183 2yny_A General control protein 27.1 1.2E+02 0.0041 23.6 5.5 34 67-100 70-103 (106)
184 3qh9_A Liprin-beta-2; coiled-c 26.9 1.9E+02 0.0066 21.3 9.7 23 156-178 31-53 (81)
185 2wt7_A Proto-oncogene protein 26.8 1.6E+02 0.0053 20.2 6.4 31 69-99 26-56 (63)
186 3lay_A Zinc resistance-associa 26.8 1.6E+02 0.0054 24.6 6.7 19 117-135 114-132 (175)
187 1a93_B MAX protein, coiled coi 26.3 88 0.003 19.4 3.7 20 77-96 11-30 (34)
188 3lss_A Seryl-tRNA synthetase; 26.2 4E+02 0.014 25.7 10.4 24 167-190 113-136 (484)
189 4dzn_A Coiled-coil peptide CC- 25.3 1.2E+02 0.0039 18.2 4.8 21 78-98 7-27 (33)
190 1avy_A Fibritin, gpwac M; bact 25.0 1.6E+02 0.0054 21.3 5.3 32 54-85 10-41 (74)
191 1lrz_A FEMA, factor essential 24.9 1.3E+02 0.0043 28.0 6.4 56 71-135 245-300 (426)
192 1gd2_E Transcription factor PA 24.7 1.2E+02 0.0042 21.6 4.8 9 75-83 31-39 (70)
193 1zxa_A CGMP-dependent protein 24.4 1E+02 0.0035 22.0 4.3 16 46-61 19-34 (67)
194 1kd8_B GABH BLL, GCN4 acid bas 24.0 1.4E+02 0.0048 18.7 4.9 22 78-99 6-27 (36)
195 1g6u_A Domain swapped dimer; d 23.4 1.5E+02 0.0053 19.0 5.7 21 140-160 23-43 (48)
196 3q0x_A Centriole protein; cent 23.1 3.8E+02 0.013 23.4 9.4 57 140-196 167-223 (228)
197 2xzr_A Immunoglobulin-binding 23.0 2.6E+02 0.0088 21.4 17.2 12 88-99 28-39 (114)
198 3plt_A Sphingolipid long chain 22.9 3.9E+02 0.013 23.4 13.1 61 80-143 62-124 (234)
199 3ra3_A P1C; coiled coil domain 22.7 1.2E+02 0.0041 17.5 3.8 12 49-60 11-22 (28)
200 1j1d_B Troponin T, TNT; THIN f 22.2 2.6E+02 0.009 21.5 6.6 40 124-163 50-89 (106)
201 1ytz_T Troponin T; muscle, THI 22.1 2.7E+02 0.0093 21.4 7.1 43 121-163 47-89 (107)
202 3ajw_A Flagellar FLIJ protein; 22.1 2.7E+02 0.0093 21.4 16.7 50 121-170 72-121 (150)
203 2qyw_A Vesicle transport throu 21.9 2.6E+02 0.0087 21.0 7.6 49 150-198 25-75 (102)
204 4fi5_A Nucleoprotein; structur 21.6 2.9E+02 0.01 21.6 9.0 55 46-100 23-82 (113)
205 3ajw_A Flagellar FLIJ protein; 21.6 2.8E+02 0.0095 21.3 15.8 25 44-68 32-56 (150)
206 2d4y_A HAP1, flagellar HOOK-as 21.4 4.1E+02 0.014 24.9 9.3 31 70-100 93-123 (463)
207 1fzc_C Fibrin; blood coagulati 21.2 73 0.0025 29.3 3.8 31 69-99 14-44 (319)
208 2oto_A M protein; helical coil 21.0 3.2E+02 0.011 21.8 21.0 40 60-99 30-69 (155)
209 3s84_A Apolipoprotein A-IV; fo 20.9 4.3E+02 0.015 23.3 24.3 224 48-282 18-263 (273)
210 1hyw_A GPW, head-TO-tail joini 20.2 47 0.0016 23.7 1.8 20 264-283 31-50 (68)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=98.43 E-value=0.00024 Score=64.10 Aligned_cols=17 Identities=6% Similarity=-0.071 Sum_probs=10.3
Q ss_pred ccCCchhHHHHHHHHHH
Q 023185 207 SAWLPPWLAVHLLQCQS 223 (286)
Q Consensus 207 g~~l~Pwla~~~~~~~~ 223 (286)
..-+||-|-..|.++..
T Consensus 170 ~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 170 VEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHTSCHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHH
Confidence 33556666666666554
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.31 E-value=0.00093 Score=57.48 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGK 71 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~ 71 (286)
++..++..+..+...++.+..++..+
T Consensus 7 ~~~~l~~~~~~~~~~~~~l~~~l~~l 32 (284)
T 1c1g_A 7 KMQMLKLDKENALDRADEAEADKKAA 32 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.26 E-value=0.0014 Score=56.39 Aligned_cols=7 Identities=0% Similarity=-0.045 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 023185 51 KSKIRSL 57 (286)
Q Consensus 51 k~ki~eL 57 (286)
...+..+
T Consensus 19 ~~~~~~l 25 (284)
T 1c1g_A 19 LDRADEA 25 (284)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 4
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.94 E-value=0.0021 Score=57.81 Aligned_cols=54 Identities=9% Similarity=0.178 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 48 ~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
..+...+..++..+..+...+..+...+..++..+..++.+|..+...|...+.
T Consensus 28 ~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~ 81 (256)
T 3na7_A 28 REKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK 81 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444444444444444444433
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=97.29 E-value=0.01 Score=63.66 Aligned_cols=131 Identities=24% Similarity=0.274 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~ 124 (286)
....++..++.+|+..+++..++...+...+...+ .....++..|+.+++.++.. +.+...++.++..|+++
T Consensus 921 ~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~---~~~~~e~~~L~~~l~~le~~-----~~e~~~~~~~v~~L~~e 992 (1080)
T 2dfs_A 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRMS-----EEEAKNATNRVLSLQEE 992 (1080)
T ss_dssp ------------------------------CHHHH---HHHHHHHHHHHHTHHHHHHH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 33455555555555555554444444444444333 23445566666666655432 23444555788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEE 186 (286)
Q Consensus 125 Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Ee 186 (286)
++.+..++.....++..++.+...+. .+++.++..|++.+...+.++++++..+...++
T Consensus 993 ~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 993 IAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877777777665554 356677777777777777777777755544443
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.24 E-value=0.00084 Score=72.36 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=24.4
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSE 87 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~ 87 (286)
+-..++.++.+++.++..++..+.++..++..+..++..++..+.....
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~ 906 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETE 906 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555554444444444433333
No 7
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.21 E-value=0.0016 Score=70.28 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI 96 (286)
..++.+++.++..++..+..+...+..+...+..++.++.....++......+
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l 908 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555566665555555555555555555555555555554444444433
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.12 E-value=0.11 Score=44.93 Aligned_cols=118 Identities=14% Similarity=0.168 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETL---NAAEQVDKAHARADEL 121 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~---~~~eqi~ka~~Ri~eL 121 (286)
+++.+++....+......++.. .++..|.++++.+..+...+..|..++++.+.++.. .....+...+..+..|
T Consensus 24 q~~~~le~El~EFqesSrELE~---ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l 100 (189)
T 2v71_A 24 QSFQEARDELVEFQEGSRELEA---ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQT 100 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443 346778888888888888888888888888766611 1112233333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 122 EKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (286)
Q Consensus 122 ek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek 165 (286)
....+.++..+..+......|+...+.....+..+..+++..-.
T Consensus 101 ~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiE 144 (189)
T 2v71_A 101 RAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIE 144 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444444333
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.94 E-value=0.14 Score=60.45 Aligned_cols=30 Identities=13% Similarity=-0.026 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHhhhhhhhCcchhHHHHH
Q 023185 213 WLAVHLLQCQSLIETHWNAHGKPAMDVAIQ 242 (286)
Q Consensus 213 wla~~~~~~~~~~~~~w~~hg~p~~~~~~~ 242 (286)
-|+.+..|+.+....+-.....-+-+.++-
T Consensus 2081 gL~~Ek~RW~~~~~~l~~~~~~L~GD~LLa 2110 (3245)
T 3vkg_A 2081 NLNSERGRWEQQSENFNTQMSTVVGDVVLA 2110 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccHHHHHHHHHHHHHhccHHHHHH
Confidence 367777777666666555544444444443
No 10
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=96.59 E-value=0.22 Score=40.28 Aligned_cols=111 Identities=23% Similarity=0.293 Sum_probs=54.1
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 60 HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEK 139 (286)
Q Consensus 60 ~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk 139 (286)
.+.....++..+...+...+....++......|..+.+.++..+ ..-...+.+.+.....|......+..+.
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL--------~~E~~~l~e~EE~~~~L~~~k~eLe~~l 85 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQV--------QAEQDNLADAEERCDQLIKNKIQLEAKV 85 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555555555554322 1111222233333444444444444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (286)
Q Consensus 140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE 178 (286)
..+..+..+.+.....+......++....+.+.+|+.++
T Consensus 86 ~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 86 KEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555544
No 11
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.54 E-value=0.16 Score=39.43 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (286)
Q Consensus 47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~ 97 (286)
++-++.++..|+...+............+..++........+|.+|+..|.
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~ 54 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLR 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444555555555555555444444444444444444444444444443333
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.47 E-value=0.14 Score=50.28 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 156 LSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 156 l~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
++.....++...++++..+.++.++...+..++.++
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 13
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.26 E-value=0.58 Score=55.34 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=22.4
Q ss_pred hhhhhhhCcchhHHHHHHHH------------HhHHhhhhhchhhH
Q 023185 226 ETHWNAHGKPAMDVAIQKAL------------EKKAQAGKWVQPHV 259 (286)
Q Consensus 226 ~~~w~~hg~p~~~~~~~~~~------------~~~~~~~~~~~ph~ 259 (286)
...|+.+|=|.=+--++-|. .+..||-+|.+-+-
T Consensus 2159 i~~W~~~GLP~D~lSiENaiiv~~~~R~PLlIDPq~Qa~~WIk~~~ 2204 (3245)
T 3vkg_A 2159 RLNWHANSLPSDELCIENAIMLKRFNRYPLVIDPSGQAMEFLMNQY 2204 (3245)
T ss_dssp HHHHHHTTCCSSHHHHHHHHHTTSCSSCEEEECTTSHHHHHHHHHT
T ss_pred HHHHHhCCCCCCchhhhHHHHHhcCCCceEEEChHHHHHHHHHHHh
Confidence 45788888886444444333 24578999988664
No 14
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=96.23 E-value=0.47 Score=40.26 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDL 156 (286)
Q Consensus 116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el 156 (286)
.++.+|+.-|..|..+++..+.....++...+.+..++..+
T Consensus 90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l 130 (168)
T 3o0z_A 90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333333333
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.22 E-value=0.29 Score=52.43 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=0.4
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhh
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQEL 68 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL 68 (286)
.++.++.+++.++.+.+.....+..++
T Consensus 925 ~LE~kl~eLq~rL~~~e~~n~~L~~~~ 951 (1080)
T 2dfs_A 925 GLENKIMQLQRKIDEQNKEYKSLLEKM 951 (1080)
T ss_dssp --------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666655555554444444
No 16
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.10 E-value=0.33 Score=37.57 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
++-++.++..|+...+........+...+..++........+|.+|+..|..+
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~l 56 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGT 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44455555555555555554444444444444444444444444444444333
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.02 E-value=0.66 Score=40.10 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
......++..+..+++...++-...-+.++.++ ++.|...+..+..|++.+..+.
T Consensus 15 wk~~~~~~~q~~~~le~El~EFqesSrELE~EL---E~eL~~~Ek~~~~L~~~~~~L~ 69 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQEGSRELEAEL---EAQLVQAEQRNRDLQADNQRLK 69 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666555555555554433 3555566666666666665555
No 18
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.79 E-value=0.48 Score=36.71 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
+++...+..++..........+....+++.......+++.++..++..|..++.+++.++.
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee 65 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLE 65 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777777777777777777777777776653
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.75 E-value=0.18 Score=49.33 Aligned_cols=73 Identities=11% Similarity=0.061 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023185 126 DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (286)
Q Consensus 126 e~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~ 198 (286)
+.+++....+..+.+.++.+.........+.+...+.+++...+.+..++...+....+.++......+.+..
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555555555555555555555555555555555555555555555555544444333
No 20
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.61 E-value=0.4 Score=38.73 Aligned_cols=95 Identities=17% Similarity=0.233 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQ 124 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~ 124 (286)
.++.+++.....-...+.....+|.++...|..++.+|..+......|+..|..++... ..++..++..+..|+..
T Consensus 17 ~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~----~~~l~~~q~~i~~lE~e 92 (131)
T 3tnu_A 17 TKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY----CMQLAQIQEMIGSVEEQ 92 (131)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333444444444444444444444444555554444222 12333444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023185 125 IDNLKKESEKQQKEKEALE 143 (286)
Q Consensus 125 Ie~Lk~eie~~~~kk~eLE 143 (286)
+..++.+...+..+-..|-
T Consensus 93 L~~~r~em~~ql~EYq~Ll 111 (131)
T 3tnu_A 93 LAQLRCEMEQQNQEYKILL 111 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555533333333
No 21
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.35 E-value=0.43 Score=38.38 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023185 113 KAHARADELEKQIDNLKKESEKQ 135 (286)
Q Consensus 113 ka~~Ri~eLek~Ie~Lk~eie~~ 135 (286)
.++..+..|+..+..++.+...+
T Consensus 79 ~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 79 DARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 33445555555555555555544
No 22
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.21 E-value=1.2 Score=37.68 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=22.7
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 52 SKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 52 ~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.++..|+.++.+++..++.=-+.-..+.+...+.+..+..++..+..++
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq 54 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQ 54 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444444444555555555555554444444
No 23
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=95.16 E-value=0.4 Score=35.62 Aligned_cols=58 Identities=16% Similarity=0.220 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+...+..++..........+....+++.......+.+.++..+...|..++.+++.++
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~e 61 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYS 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444444443
No 24
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.94 E-value=0.97 Score=35.01 Aligned_cols=61 Identities=23% Similarity=0.324 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
+.++++.++.++..|+++.+.+..++..+...+..-...-...+.....++.+++.+...+
T Consensus 3 ~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999988888888888888888888888888888888888888887666
No 25
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.86 E-value=1.5 Score=36.72 Aligned_cols=116 Identities=18% Similarity=0.247 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE-TLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEA 149 (286)
Q Consensus 71 ~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl-~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~ 149 (286)
+...+...+........+|..|+.++..+-..+ ++.... .++..|- +.+..++.....+..+.+.++..+
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~se--ekasqrE-------d~yEeqIk~L~~kLKEAE~RAE~A 96 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQA--EKYSQKE-------DKYEEEIKVLSDKLKEAETRAEFA 96 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh--hHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555443333 222111 2222343 444555555555566678888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185 150 EKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEA 195 (286)
Q Consensus 150 e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea 195 (286)
+..+..++..++.+++.....+..+..+...+..+-..+..+...-
T Consensus 97 ERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~ 142 (155)
T 2efr_A 97 ERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKN 142 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 8888888888888888888888888888888887777776654433
No 26
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=94.78 E-value=0.38 Score=35.69 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 48 ~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+.++.++..|+...+............+...+........+|..|+..|..++
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE 54 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTE 54 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34667777777777777666666666666666666666666666666665555
No 27
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.77 E-value=1.1 Score=34.62 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=41.2
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 41 SPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 41 ~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+++...+..++..........+....+++.......+++..+..++..|..++.+++.++
T Consensus 5 d~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~ 64 (101)
T 3u59_A 5 EAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYS 64 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666777766666666666666677777777777777777777777777766665
No 28
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=94.62 E-value=0.1 Score=38.37 Aligned_cols=47 Identities=32% Similarity=0.519 Sum_probs=41.0
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 54 i~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+.+|+..+.....+|..+|..|..+++.|.++...|..|+++++..+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67777778788888899999999999999999999999999988764
No 29
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.23 E-value=1.7 Score=34.60 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=40.3
Q ss_pred cCCCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 37 AVDSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 37 ~~~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+.....+...+.+++.+|..+......+.-+++.....++........--..-..++++|..+.
T Consensus 12 ~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lr 75 (119)
T 3ol1_A 12 SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFR 75 (119)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 3455667788888888888887777776666666666666665555544444444555554443
No 30
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.21 E-value=2.1 Score=35.76 Aligned_cols=21 Identities=14% Similarity=0.417 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023185 114 AHARADELEKQIDNLKKESEK 134 (286)
Q Consensus 114 a~~Ri~eLek~Ie~Lk~eie~ 134 (286)
+..++.+|+..+...-+.+..
T Consensus 40 aE~k~~eLEeeL~~v~~nlKs 60 (155)
T 2efr_A 40 SEGKSAELEEELKTVTNNLKS 60 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 334555555544444333333
No 31
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=94.05 E-value=0.23 Score=37.21 Aligned_cols=59 Identities=31% Similarity=0.354 Sum_probs=53.5
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~ 97 (286)
++..+-+++++++-++.+++++.-.....|++-.++|..++..+..+..+|.-|++++.
T Consensus 20 ~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 20 KAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 55678899999999999999999999999999999999999999999999988888764
No 32
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.63 E-value=0.47 Score=38.91 Aligned_cols=56 Identities=21% Similarity=0.242 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.+.+.+..++..+..++..+..++.+.+.+++.+.+++.++..++..|+.++..++
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444443
No 33
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=93.58 E-value=1.9 Score=33.16 Aligned_cols=33 Identities=18% Similarity=0.258 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
..+...|..+...+..+..+|..+...+..+..
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444444555555555555555543
No 34
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=92.97 E-value=2 Score=33.89 Aligned_cols=18 Identities=17% Similarity=0.444 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhHHH
Q 023185 46 ELDQLKSKIRSLESHIDE 63 (286)
Q Consensus 46 el~elk~ki~eLes~i~e 63 (286)
+++.++.++...+..+..
T Consensus 25 ei~~L~~~L~~AEeaL~~ 42 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVA 42 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555554444444433
No 35
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.88 E-value=4.1 Score=32.63 Aligned_cols=25 Identities=8% Similarity=0.259 Sum_probs=0.4
Q ss_pred HHHHHHHhhHHHHHHhhhhHHHHHH
Q 023185 52 SKIRSLESHIDEKTQELKGKDEVVA 76 (286)
Q Consensus 52 ~ki~eLes~i~e~~~eL~~~d~~I~ 76 (286)
.|+.++......-...+.....+|.
T Consensus 17 ~K~eel~~~~~~~~~~l~~~k~Ei~ 41 (131)
T 3tnu_A 17 TKTEELNREVATNSELVQSGKSEIS 41 (131)
T ss_dssp ------------------------C
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444444444433333333333333
No 36
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=91.50 E-value=5.9 Score=38.59 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 023185 154 SDLSAKLEKLQKIND 168 (286)
Q Consensus 154 ~el~~k~~~Lek~~~ 168 (286)
..+..++..|+..+.
T Consensus 178 ~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 178 DSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 37
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=91.48 E-value=3.7 Score=40.53 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLS 157 (286)
Q Consensus 120 eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~ 157 (286)
+|++.|..|+..+..+-..+..|+.-.+++..++..|+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666665554444444444444443333333
No 38
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=91.08 E-value=6.9 Score=37.11 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023185 124 QIDNLKKESEKQQKEKEALEARA 146 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLEa~~ 146 (286)
.|..|+..++.+..+...||.+-
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444
No 39
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=90.92 E-value=3.8 Score=30.70 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 48 ~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
.+++.+|..+......+.-+++.....++.......+=-..-..++++|..+
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~L 54 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSF 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333333333333444444444
No 40
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=90.76 E-value=1.5 Score=30.14 Aligned_cols=13 Identities=38% Similarity=0.598 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q 023185 107 AAEQVDKAHARAD 119 (286)
Q Consensus 107 ~~eqi~ka~~Ri~ 119 (286)
+..+...|+.|++
T Consensus 37 ak~eA~RAN~RlD 49 (52)
T 1jcd_A 37 AKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 3466667777775
No 41
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=90.37 E-value=6.9 Score=32.52 Aligned_cols=61 Identities=26% Similarity=0.292 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
+-+..+.....|..|++.......+|+.++..|....+.+..+.+++..|+-+.+.++.++
T Consensus 59 ~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl 119 (152)
T 3a7p_A 59 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKL 119 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777888888888888888888888888888877777777777777777776433
No 42
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=90.00 E-value=4.3 Score=40.07 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKV 183 (286)
Q Consensus 140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~ 183 (286)
.+|+.+...++.++...-+.+..|+..+.+|-.+|++||-++..
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666677778888888888888888877654
No 43
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.97 E-value=13 Score=35.24 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
..+.|+++|+++++-.-+.+.+-... -..+......+..++.+-++.+.|++..|..+++.++.+..++.++
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGFQDVEAQAATA---NHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345555555555444443222111 1122334444444444444455555555555555555555555443
No 44
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=89.35 E-value=6.7 Score=30.88 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
+.+...+..++..+..+..+|+.+..+|...
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~ 57 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQH 57 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555444443
No 45
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=89.14 E-value=4.2 Score=31.20 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=31.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEAL 142 (286)
Q Consensus 68 L~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eL 142 (286)
+..+...+..++.-+..++..|+.|..+|...+..+ .+|..|+-+++-++.+-..-+...+.+
T Consensus 4 ~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~------------E~i~vLk~Qv~IY~~DF~aERadREkl 66 (94)
T 3jsv_C 4 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM------------ETVPVLKAQADIYKADFQAERHAREKL 66 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555666666655555444222 355555555555555444443333333
No 46
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.75 E-value=7.5 Score=30.66 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEKQIDNLKKESEKQQKEKEALEARAIEAE 150 (286)
Q Consensus 116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e 150 (286)
.++|+|+-.=++|...-.....-...++.+.+.+.
T Consensus 56 ~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ai 90 (111)
T 2v66_B 56 KYVRELEQANDDLERAKRATIVSLEDFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35555554444444444444333344444444433
No 47
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.20 E-value=2 Score=35.15 Aligned_cols=28 Identities=11% Similarity=0.328 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 72 DEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 72 d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
...++++.+.+.....++..|...+..-
T Consensus 31 ~~~l~~l~~~l~~~~~e~~~L~~~l~eE 58 (135)
T 2e7s_A 31 KEDYNTLKRELSDRDDEVKRLREDIAKE 58 (135)
T ss_dssp HHHHHHHHHHTTTHHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3345555555555555555555555444
No 48
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.04 E-value=11 Score=31.49 Aligned_cols=22 Identities=32% Similarity=0.290 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 125 IDNLKKESEKQQKEKEALEARAIEA 149 (286)
Q Consensus 125 Ie~Lk~eie~~~~kk~eLEa~~~e~ 149 (286)
...+..+++.+ ...|-..++.+
T Consensus 81 ~~~ie~ElEeL---TasLFeEAN~M 102 (154)
T 2ocy_A 81 ADKLNKEVEDL---TASLFDEANNM 102 (154)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHH
Confidence 33344444444 44455555444
No 49
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=87.68 E-value=22 Score=34.79 Aligned_cols=99 Identities=19% Similarity=0.206 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 86 SERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQK 165 (286)
Q Consensus 86 ~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek 165 (286)
+.+++.-|.++.+.|+.. .+++.. -++.+.+.+..=..++++.+.++++-+.. ...-+..+...+..++..++
T Consensus 8 q~~la~yq~elarvqkan-a~aka~---Ye~~~ae~~a~n~~i~aeNeaikkrNa~a---ka~Ye~~l~kY~~dlakY~~ 80 (497)
T 3iox_A 8 QAKLTAYQTELARVQKAN-ADAKAA---YEAAVAANNAANAALTAENTAIKKRNADA---KADYEAKLAKYQADLAKYQK 80 (497)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666544 111110 11233333333334444444443333222 12223345556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 166 INDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 166 ~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
..++++..+...+..+......+.++
T Consensus 81 ~~AeY~~kl~aYe~~~~~~~k~lae~ 106 (497)
T 3iox_A 81 DLADYPVKLKAYEDEQTSIKAALAEL 106 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555555544
No 50
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=87.25 E-value=2.1 Score=31.65 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAK 192 (286)
Q Consensus 140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle 192 (286)
..++.|..+++.+++-.+..++.|.+.+.+|+..|+.+.+.+..+-..+..+.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788888888889999999999999999999999999988877766665543
No 51
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=86.93 E-value=12 Score=30.82 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=7.8
Q ss_pred HHHhhHHHHHHhhhhHHHHHHHHHH
Q 023185 56 SLESHIDEKTQELKGKDEVVAQKEK 80 (286)
Q Consensus 56 eLes~i~e~~~eL~~~d~~I~q~e~ 80 (286)
-++...+.....+......+..+++
T Consensus 7 llEeeLer~eerl~~a~~kLeeaek 31 (147)
T 2b9c_A 7 LVEEELDRAQERLATALQKLEEAEK 31 (147)
T ss_dssp ----CCGGGGTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 52
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.48 E-value=13 Score=30.12 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 023185 48 DQLKSKIRSLE 58 (286)
Q Consensus 48 ~elk~ki~eLe 58 (286)
..+..++.++.
T Consensus 35 ~~vd~km~ei~ 45 (138)
T 3hnw_A 35 SYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 33344443333
No 53
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=84.94 E-value=16 Score=30.40 Aligned_cols=59 Identities=24% Similarity=0.241 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
..+.+..++..+..++..+.....++..+...+..+..++..+.-+.+.++.++..++.
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~ 124 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKK 124 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555543
No 54
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.67 E-value=16 Score=30.36 Aligned_cols=46 Identities=4% Similarity=0.033 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023185 152 KISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEATS 197 (286)
Q Consensus 152 k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~ 197 (286)
...++|.-+..........+.....++..+...+..+..++.+...
T Consensus 95 LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~ 140 (154)
T 2ocy_A 95 LFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKN 140 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555556666655555555544443
No 55
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=84.49 E-value=5.7 Score=27.18 Aligned_cols=54 Identities=11% Similarity=0.164 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~ 98 (286)
..+..+...+.......+.....+......+++....++.....|..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666666666666666666666666666666666666543
No 56
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=83.26 E-value=1.8 Score=31.33 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=31.5
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 61 IDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 61 i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
.++..+.|+.++..|.+++..++.+...|..|.++++..+.
T Consensus 13 ~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 13 EEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888999999999999999999999999888763
No 57
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=82.14 E-value=17 Score=28.66 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 127 NLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEK 162 (286)
Q Consensus 127 ~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~ 162 (286)
.++..+..+......||-..+.....+..+++++..
T Consensus 53 ~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~ 88 (111)
T 2v66_B 53 QLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQ 88 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHH
Confidence 344444444444444554444444455555554443
No 58
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=81.88 E-value=35 Score=32.13 Aligned_cols=16 Identities=38% Similarity=0.221 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 023185 88 RIVSLQKELSSLQKKE 103 (286)
Q Consensus 88 eI~~Lq~eI~~~qkkl 103 (286)
--..||.+|+++|+.+
T Consensus 398 ~~~~~~~~~~~~~~~~ 413 (471)
T 3mq9_A 398 VTHLLQQELTEAQKGF 413 (471)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhH
Confidence 3344566666665444
No 59
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=80.53 E-value=6 Score=28.90 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 69 KGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (286)
Q Consensus 69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI 96 (286)
..++++|.+.+..|.+++..|.....+|
T Consensus 29 ~~K~eELr~kd~~I~eLEk~L~ekd~eI 56 (72)
T 3nmd_A 29 QEKIEELRQRDALIDELELELDQKDELI 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.11 E-value=41 Score=31.80 Aligned_cols=56 Identities=14% Similarity=0.033 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 139 KEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (286)
Q Consensus 139 k~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~E 194 (286)
..+++..+..+....+......+.+.+..+.++..+.++...+..+.+.+..+...
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 44445555555555555555666666666666666666666666665555554433
No 61
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.90 E-value=44 Score=31.53 Aligned_cols=19 Identities=21% Similarity=0.221 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 023185 70 GKDEVVAQKEKAIQDKSER 88 (286)
Q Consensus 70 ~~d~~I~q~e~~i~e~~~e 88 (286)
.++..+...+..+.+....
T Consensus 371 ~le~~~~~~~~~~~~~~~~ 389 (487)
T 3oja_A 371 ALDEQVSNGRRAHAELDGT 389 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 3333343333333333333
No 62
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=78.20 E-value=12 Score=29.87 Aligned_cols=26 Identities=12% Similarity=0.285 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 75 VAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 75 I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
..+.+..+..+...|..|+.+++...
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666665553
No 63
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=77.58 E-value=19 Score=26.67 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQ 135 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~ 135 (286)
.|..++.++..++.+.+.+
T Consensus 36 ~i~~lE~el~~~r~e~~~q 54 (86)
T 1x8y_A 36 LLAEKEREMAEMRARMQQQ 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444443
No 64
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.20 E-value=20 Score=26.67 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 75 VAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 75 I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+++++..|...-..|.-|+-+|+.++
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELK 33 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELK 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555666666665554
No 65
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=77.11 E-value=22 Score=27.14 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 68 LKGKDEVVAQKEKAIQDKSERIVSLQ 93 (286)
Q Consensus 68 L~~~d~~I~q~e~~i~e~~~eI~~Lq 93 (286)
|...+..+...+..|.++...|....
T Consensus 11 L~~aEeaL~~kq~~id~lke~~~q~~ 36 (94)
T 3jsv_C 11 LQQAEEALVAKQELIDKLKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444
No 66
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=77.10 E-value=56 Score=31.72 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 160 LEKLQKINDEQKSKIRKTERALKV 183 (286)
Q Consensus 160 ~~~Lek~~~Eqk~~i~~lE~~lq~ 183 (286)
+..|+.........|+.++..+..
T Consensus 170 i~~L~~~~~~l~~ki~~l~~~~~~ 193 (464)
T 1m1j_B 170 LRVLRAVIDSLHKKIQKLENAIAT 193 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555556666555544
No 67
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.57 E-value=21 Score=26.56 Aligned_cols=9 Identities=22% Similarity=0.541 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 023185 49 QLKSKIRSL 57 (286)
Q Consensus 49 elk~ki~eL 57 (286)
++..||.++
T Consensus 10 qLE~KIq~a 18 (81)
T 2jee_A 10 KLEAKVQQA 18 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 68
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=76.16 E-value=23 Score=28.76 Aligned_cols=10 Identities=20% Similarity=0.022 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 023185 140 EALEARAIEA 149 (286)
Q Consensus 140 ~eLEa~~~e~ 149 (286)
..|-..++.+
T Consensus 81 asLFeEAN~M 90 (135)
T 2e7s_A 81 ASLFDEANNL 90 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 69
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=75.57 E-value=7.7 Score=28.56 Aligned_cols=37 Identities=19% Similarity=0.248 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKE 79 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e 79 (286)
+...+.++..+++-.+..++++++.+-.-...|+.++
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~ 48 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNA 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554444444443333333333333
No 70
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.98 E-value=26 Score=26.90 Aligned_cols=34 Identities=9% Similarity=0.263 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 67 ELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 67 eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
++..+...|.+++........++..|...+..-+
T Consensus 6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~ 39 (97)
T 2eqb_B 6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKEN 39 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666555443
No 71
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=74.96 E-value=66 Score=31.48 Aligned_cols=98 Identities=23% Similarity=0.239 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 91 SLQKELSSLQKKETLNAAEQVDKAHARADE-LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDE 169 (286)
Q Consensus 91 ~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~e-Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~E 169 (286)
.-|.++..-|+++ ..+.++++.+.+ -++-+...+++=..+..+.+.+..+- .......++.+++.++..+.
T Consensus 6 ~yq~~la~yq~el-----arvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrN---a~aka~Ye~~l~kY~~dlak 77 (497)
T 3iox_A 6 DYQAKLTAYQTEL-----ARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRN---ADAKADYEAKLAKYQADLAK 77 (497)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4566777777666 445555555443 33345555555444544443333222 23355667777777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 170 QKSKIRKTERALKVAEEEMMRAKFEAT 196 (286)
Q Consensus 170 qk~~i~~lE~~lq~~Eeei~kle~Ea~ 196 (286)
++.++.+.+..++..+....+......
T Consensus 78 Y~~~~AeY~~kl~aYe~~~~~~~k~la 104 (497)
T 3iox_A 78 YQKDLADYPVKLKAYEDEQTSIKAALA 104 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777777766555444
No 72
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=74.53 E-value=59 Score=30.78 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (286)
Q Consensus 121 Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~ 160 (286)
|++.|..|+..+..+-.....|+.....+..++..|+..+
T Consensus 118 Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 118 LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555665555554444555555444444444444444
No 73
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=74.48 E-value=54 Score=30.29 Aligned_cols=64 Identities=14% Similarity=0.232 Sum_probs=39.7
Q ss_pred CchhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhh
Q 023185 40 SSPLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEK-----------AIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 40 ~~~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~-----------~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
...+..-|+.++..+...+...+.+...|..-...+..-.. .+......|..|+.+|+.++.++
T Consensus 118 ~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I 192 (346)
T 2nrj_A 118 GETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSV 192 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 44566777888888888888888777777777777643333 33333334555555555555444
No 74
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=74.31 E-value=34 Score=27.96 Aligned_cols=84 Identities=8% Similarity=0.075 Sum_probs=53.0
Q ss_pred HHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 51 KSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKK 130 (286)
Q Consensus 51 k~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~ 130 (286)
+.++.++..-+......|..++..|..+-..+......|.+|...|..++..+ .+.+..+.+-..+|.+|-.+.+.-..
T Consensus 39 ~~qi~en~~~iakNqadI~~L~~dI~dLd~~v~l~~RdIgsL~ddVa~NqaDI-akNqADIdNNinnIYELAQQQDQHSS 117 (157)
T 2qih_A 39 KAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADI-AKNQADIANNIKNIYELAQQQDQHSS 117 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhhcchhhHHHhhHHHH-HHhHHHHHhhHHHHHHHHHHHHHhHH
Confidence 34455666666666666677777777777777777788888888888887666 44445555555555555555554444
Q ss_pred HHHHH
Q 023185 131 ESEKQ 135 (286)
Q Consensus 131 eie~~ 135 (286)
+|..+
T Consensus 118 DIKTL 122 (157)
T 2qih_A 118 DIKTL 122 (157)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 75
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=73.47 E-value=15 Score=24.46 Aligned_cols=33 Identities=24% Similarity=0.234 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 71 ~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
+++.+..++..+..++-..+-|.++..+.|.++
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~Kl 35 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKM 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777544
No 76
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=72.79 E-value=37 Score=27.60 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 49 QLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 49 elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
.+..+...|.+........+..+......++..+.++......|+..+..+
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~ 76 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKEL 76 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555544444444444444455555555555555555444333
No 77
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=72.75 E-value=2.9 Score=28.70 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=24.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 023185 38 VDSSPLKIELDQLKSKIRSLESHIDEKTQELK 69 (286)
Q Consensus 38 ~~~~~l~~el~elk~ki~eLes~i~e~~~eL~ 69 (286)
.|.++++.++.+++.++..|..+.++...++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677888888888888888888877766654
No 78
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=72.25 E-value=15 Score=29.62 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhHHHHHHhhhhHH
Q 023185 50 LKSKIRSLESHIDEKTQELKGKD 72 (286)
Q Consensus 50 lk~ki~eLes~i~e~~~eL~~~d 72 (286)
+..++.+++.++..+.+.+...+
T Consensus 11 l~~KvAElekkv~~lek~lk~~~ 33 (125)
T 2pms_C 11 PQAKIAELENQVHRLEQELKEID 33 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555555555555544444443
No 79
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=72.15 E-value=28 Score=25.89 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023185 80 KAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 80 ~~i~e~~~eI~~Lq~eI~~~ 99 (286)
..|..++.+|..|.+.|+.+
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~ 46 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQEN 46 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 33333333333333333333
No 80
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=71.70 E-value=28 Score=25.72 Aligned_cols=58 Identities=17% Similarity=0.330 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
++-.+++.+..+..|...-++++.--..++..|..++.+-.+++..|..+..+...+.
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777777777777777777666666666666666555543
No 81
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=71.10 E-value=28 Score=25.58 Aligned_cols=69 Identities=23% Similarity=0.246 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 120 ELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEM 188 (286)
Q Consensus 120 eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei 188 (286)
.+-++|+.|-.+=.+....+..|.--++++..++.++......+.........-...++..+...++++
T Consensus 6 gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 6 FMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666555555555566666666666666666666666665555555555555554444444443
No 82
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=71.02 E-value=7.6 Score=25.41 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=11.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHH
Q 023185 63 EKTQELKGKDEVVAQKEKAIQDKSER 88 (286)
Q Consensus 63 e~~~eL~~~d~~I~q~e~~i~e~~~e 88 (286)
++-+.|...|.+|+..+..|++++..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555544444443333
No 83
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=70.64 E-value=63 Score=30.80 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 121 LEKQIDNLKKESEKQQKEKEALEARAI 147 (286)
Q Consensus 121 Lek~Ie~Lk~eie~~~~kk~eLEa~~~ 147 (286)
+..+|..++..+.........|+....
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~ 115 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHI 115 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 333444444433333333333443333
No 84
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=70.46 E-value=7 Score=38.87 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023185 79 EKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 79 e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+....+++..+..++.+....+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~ 355 (575)
T 2i1j_A 334 EKKQQEYQDRLRQMQEEMERSQ 355 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444
No 85
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=70.44 E-value=38 Score=26.85 Aligned_cols=31 Identities=13% Similarity=0.228 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 71 ~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
+..++.+.+.-+.+.+.+-+.-+.-+..+..
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~ 60 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMA 60 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555543
No 86
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=70.41 E-value=11 Score=35.08 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ 77 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q 77 (286)
....+..++..++..+.....+|..+...+..
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~ 37 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRV 37 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHH
Confidence 34444445555554444443333333333333
No 87
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=69.84 E-value=84 Score=30.52 Aligned_cols=57 Identities=9% Similarity=0.217 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
+..+=......|..|...+.+..+--......+...-..+.....++...++.+...
T Consensus 56 L~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~ 112 (491)
T 1m1j_A 56 IDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHV 112 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 334445556666777777766666666666666666666666666666666655544
No 88
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=69.52 E-value=19 Score=26.69 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHHHHhhH
Q 023185 42 PLKIELDQLKSKIRSLESHI 61 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i 61 (286)
..+.+++.+..+|..|+..+
T Consensus 19 keqrEle~le~~Ie~LE~~i 38 (89)
T 2lw1_A 19 KLQRELEQLPQLLEDLEAKL 38 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333333
No 89
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=69.34 E-value=32 Score=25.43 Aligned_cols=10 Identities=10% Similarity=0.448 Sum_probs=3.7
Q ss_pred HHHHHhhHHH
Q 023185 54 IRSLESHIDE 63 (286)
Q Consensus 54 i~eLes~i~e 63 (286)
+..|+..|..
T Consensus 24 le~le~~Ie~ 33 (89)
T 2lw1_A 24 LEQLPQLLED 33 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 90
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=68.97 E-value=31 Score=25.21 Aligned_cols=48 Identities=29% Similarity=0.389 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNL 128 (286)
Q Consensus 70 ~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~L 128 (286)
.+++.+..++..+..++-..+-|..+..+.|.++ + .||..|+..+..+
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KL---------K--qRit~LE~~~~~~ 51 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKL---------K--QRLTKVEKFLKPL 51 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H--HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H--HHHHHHHHHhccc
Confidence 4567777777777777788888888888887544 2 5777777755543
No 91
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=68.82 E-value=88 Score=30.38 Aligned_cols=44 Identities=16% Similarity=0.345 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKV 183 (286)
Q Consensus 140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~ 183 (286)
.+|+.+...+..++...-..+..|+..+..|-..|++||.++..
T Consensus 114 ~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 114 TELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444455556666666666666666666543
No 92
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=68.25 E-value=56 Score=27.87 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhhhhhhCc
Q 023185 215 AVHLLQCQSLIETHWNAHGK 234 (286)
Q Consensus 215 a~~~~~~~~~~~~~w~~hg~ 234 (286)
.+.| ++..++...|.+.|.
T Consensus 171 R~~y-H~RreK~~rw~e~~~ 189 (192)
T 2p22_C 171 RTQY-HLRREKLATWDKQGN 189 (192)
T ss_dssp HHHH-HHHHHHHHHHTTCSC
T ss_pred HHHH-HHHHHHHHHHHhccc
Confidence 3444 788889999999885
No 93
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=67.61 E-value=34 Score=25.12 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEKQIDNLKKESEKQ 135 (286)
Q Consensus 116 ~Ri~eLek~Ie~Lk~eie~~ 135 (286)
..+..++..+..++.+.+.+
T Consensus 33 ~~i~~lE~eL~~~r~e~~~q 52 (84)
T 1gk4_A 33 DTIGRLQDEIQNMKEEMARH 52 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 94
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=66.83 E-value=14 Score=31.70 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVS 91 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~ 91 (286)
++++++....-|..|..+...+++++..++.+|..++.++.....++..
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~ 59 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKE 59 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4566666677777777777777777776666666666555555555443
No 95
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=66.43 E-value=71 Score=28.36 Aligned_cols=71 Identities=18% Similarity=0.206 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFE 194 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~E 194 (286)
-+..|+.+.+.+..+++-|.-++.-+...+.++..+++.|.....-.-.+++.+|++.-.++..+....-.
T Consensus 150 Sl~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~R 220 (242)
T 3uux_B 150 SPSALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDR 220 (242)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 47788888888988899999999999999999999999999999988899999988888888777665433
No 96
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=66.19 E-value=38 Score=25.13 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=21.2
Q ss_pred HHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 53 KIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 53 ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
++..++...+..++-+-.+...|++++.+|..+...|..++.+|+.++
T Consensus 7 rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~ 54 (83)
T 2xdj_A 7 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 54 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333444333333333344444444444444444444444444444443
No 97
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=65.69 E-value=41 Score=25.43 Aligned_cols=69 Identities=16% Similarity=0.263 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 123 KQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 123 k~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
..+..++.+-.........|+.....+...+..+......+...-..+|.....+...+-..+.+...+
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444555555555555555555555555555555555444444444443
No 98
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=65.62 E-value=13 Score=36.98 Aligned_cols=113 Identities=17% Similarity=0.310 Sum_probs=16.3
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 60 HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEK 139 (286)
Q Consensus 60 ~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk 139 (286)
...++...+....++...++..+..-+..+..|..+....+. .......+..+.+.....|..........+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~--------e~~~l~~~~~~~e~~~~~l~~~~~~~~~e~ 407 (575)
T 2i1j_A 336 KQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQA--------AKEELEQRQNELQAMMQRLEETKNMEAAER 407 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344444444444444444444444444444444444333331 111111233444445555555544444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEE 187 (286)
Q Consensus 140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eee 187 (286)
..|+.+..+ ++..+..+..........-.+++..+..+.+.
T Consensus 408 ~~l~~~~~~-------~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~ 448 (575)
T 2i1j_A 408 QKLEDEIRA-------KQEEVSRIQQEVELKDSETRRLQEEVEDARRK 448 (575)
T ss_dssp -----------------------------------------CHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 34444444444444444444444444444333
No 99
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=64.61 E-value=33 Score=33.51 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=26.9
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 65 ~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
..++..+|..-.+++.+++.+..+.+.+..+|..+.+
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~ 68 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFK 68 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666777777777777777777777777777766543
No 100
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=64.15 E-value=12 Score=30.88 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 118 ADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKL 160 (286)
Q Consensus 118 i~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~ 160 (286)
...|+..+..+..+++..+..+..++++...+...+.+++...
T Consensus 61 ~~~le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~ 103 (146)
T 2xnx_M 61 ANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEK 103 (146)
T ss_dssp HHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHH
Confidence 3344445555666666655555555555555544444444433
No 101
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=63.97 E-value=52 Score=26.01 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 023185 87 ERIVSLQKELSSLQ 100 (286)
Q Consensus 87 ~eI~~Lq~eI~~~q 100 (286)
..|..|..+|+.++
T Consensus 15 ~~Ie~Lkreie~lk 28 (120)
T 3i00_A 15 HLIERLYREISGLK 28 (120)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 102
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=63.12 E-value=19 Score=33.41 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 74 VVAQKEKAIQDKSERIVSLQKELS 97 (286)
Q Consensus 74 ~I~q~e~~i~e~~~eI~~Lq~eI~ 97 (286)
+|.+.+..|.....+|..|+..+.
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~ 36 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWR 36 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHH
Confidence 333333333333344444443333
No 103
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=62.17 E-value=36 Score=32.75 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=27.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 65 ~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
..++..+|..-.+++.+++.+..+.+.+..+|....+
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~ 66 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRK 66 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667777888888888888877777777777766543
No 104
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=60.20 E-value=87 Score=27.29 Aligned_cols=68 Identities=19% Similarity=0.269 Sum_probs=30.4
Q ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 023185 55 RSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEK 123 (286)
Q Consensus 55 ~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek 123 (286)
..-+..|....-++..-+..|...+..|...+-.|...+++|..++.+. .+.+-.+.....||.+|+-
T Consensus 80 ~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v-~~ld~~vt~~et~Isal~~ 147 (242)
T 3c9i_A 80 ADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNV-SALDGRVTTAENNISALQA 147 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred ecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhh-hhhcccccccccchhhhhh
Confidence 3334444444444444444444444444444444444444444444333 1222333344456666443
No 105
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=59.97 E-value=54 Score=28.57 Aligned_cols=158 Identities=11% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhh
Q 023185 125 IDNLKKESEKQQKEK-EALEARAIEAEKKISDLSAKLE----KLQKINDEQKSKI-RKTERALKVAEEEMMRAKFEATSR 198 (286)
Q Consensus 125 Ie~Lk~eie~~~~kk-~eLEa~~~e~e~k~~el~~k~~----~Lek~~~Eqk~~i-~~lE~~lq~~Eeei~kle~Ea~~~ 198 (286)
++.+........... -..+.-+..+......+...+. .+...+.-+-..+ ..+.+....+...+.-+-.+....
T Consensus 50 ~~~l~~~~~~l~~~l~p~~ee~~~~l~~~~~~lr~~l~kd~ee~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel~~~ 129 (243)
T 2a01_A 50 WDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEG 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHhhhhccCCchhHHHHHHHHHHHHhhhhhhhCcchhHHHHHHHHHhHHhhhhhchhhHHhhhhhhccCcCchHHHH-
Q 023185 199 SKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAVSSFSYSSIPEIL- 277 (286)
Q Consensus 199 a~ql~~~~g~~l~Pwla~~~~~~~~~~~~~w~~hg~p~~~~~~~~~~~~~~~~~~~~~ph~~~~~~~~~~~~~~~~~~~- 277 (286)
...-...-+.-|-|....--.++ ..--..-.++..|.++.+-.++..+....+.|..||++.++.++......+-+-+
T Consensus 130 ~~~~~eel~~~L~p~~eelr~kl-~~~veelk~~l~P~~ee~r~kl~~~~~el~~~l~p~~~e~~~kl~~~~e~lr~~l~ 208 (243)
T 2a01_A 130 ARQKLHELQEKLSPLGEEMRDRA-RAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAK 208 (243)
T ss_dssp HHHHHHHHCCSCCSSTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHHh
Q 023185 278 KYIEEL 283 (286)
Q Consensus 278 ~~~~~~ 283 (286)
.|+++|
T Consensus 209 p~~e~l 214 (243)
T 2a01_A 209 PALEDL 214 (243)
T ss_dssp HHHHHS
T ss_pred HHHHHH
No 106
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=59.33 E-value=16 Score=34.59 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 023185 87 ERIVSLQKELSS 98 (286)
Q Consensus 87 ~eI~~Lq~eI~~ 98 (286)
.....|.++|.+
T Consensus 45 ~~rr~l~n~~~e 56 (403)
T 4etp_A 45 TVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 107
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=59.02 E-value=21 Score=31.66 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHH
Q 023185 43 LKIELDQLKSKIRSLESHIDEKTQELKGKDEVVA 76 (286)
Q Consensus 43 l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~ 76 (286)
+++.++++...|+.|+..++++++....+...|.
T Consensus 4 lnsRvd~~EErIs~le~rleei~q~eq~~ekrik 37 (233)
T 2yko_A 4 LRSRCDQLEERVSAAEDEINEIKREGKFREKRIK 37 (233)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444444333333
No 108
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=58.57 E-value=28 Score=32.95 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
..++.+|..++.+..+++..|..++.++..++
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444443
No 109
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=58.53 E-value=52 Score=24.22 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTE 178 (286)
Q Consensus 121 Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE 178 (286)
++..+...+++++.++....+|..=...++..+..+....+.+++...-++....+++
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666666666666666665555555555555555555555555554444443
No 110
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=58.48 E-value=54 Score=29.56 Aligned_cols=44 Identities=20% Similarity=0.443 Sum_probs=38.2
Q ss_pred HhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 58 ESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 58 es~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
.++...+..+|...+..+.+.++.++++-..|..++.+|...++
T Consensus 215 d~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 258 (268)
T 2yo3_A 215 DQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKK 258 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777888888999999999999999999999999999988853
No 111
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=55.93 E-value=44 Score=23.70 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 75 VAQKEKAIQDKSERIVSLQKELSS 98 (286)
Q Consensus 75 I~q~e~~i~e~~~eI~~Lq~eI~~ 98 (286)
+.....+|.++...|..|+.+|++
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444444444444433
No 112
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=55.63 E-value=90 Score=26.69 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSS 98 (286)
Q Consensus 69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~ 98 (286)
..-|.-|..+..+...++.++...+.+|..
T Consensus 16 ~~ad~LV~~L~~En~~L~~ql~~k~~ei~~ 45 (190)
T 4emc_A 16 DSADLLVANLVNENFVLSEKLDTKATEIKQ 45 (190)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 113
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=55.52 E-value=64 Score=24.33 Aligned_cols=67 Identities=10% Similarity=0.259 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRA 191 (286)
Q Consensus 125 Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kl 191 (286)
+..+.++.+.+......++.....+...-..+-.......-...+....++.++.....+...++++
T Consensus 27 L~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL 93 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKL 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444444444444555555555555555555555554
No 114
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=55.23 E-value=59 Score=23.85 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 72 d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+-.=+.+...+.+++.+...|..++.+.+
T Consensus 29 nvvk~DLI~rvdELt~E~e~l~~El~s~~ 57 (77)
T 2w83_C 29 NIVKNDLIAKVDELTCEKDVLQGELEAVK 57 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33334444555555555555555555554
No 115
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=54.95 E-value=61 Score=23.87 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQ 66 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~ 66 (286)
+++.++++...|+..+.++..
T Consensus 4 eie~L~~q~~~Le~~l~e~E~ 24 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLED 24 (86)
T ss_dssp --------CTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555544433
No 116
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=54.42 E-value=68 Score=24.31 Aligned_cols=67 Identities=22% Similarity=0.299 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
.-.+|+..+..+..+-+..+....+|+++..++-+-+.. =.=..-+.+..+.+++++...++-.+.+
T Consensus 26 Qk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~-------EklAkldLE~RLsKtEKDkAiLELkLaE 92 (101)
T 1d7m_A 26 QKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLEL-------EKLARMELEARLAKTEKDRAILELKLAE 92 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH-------HHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 444455555555555555555555555554444222211 1111123445555555555555444433
No 117
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=53.00 E-value=78 Score=24.51 Aligned_cols=53 Identities=19% Similarity=0.235 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 48 DQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 48 ~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.++....+.+-.+++=+...+.+.++.+.+.+.+..++..++..+--.++.++
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~ 71 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQ 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677778888888888888888888888888887777776666666665
No 118
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=52.88 E-value=76 Score=24.40 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 111 VDKAHARADELEKQIDNLKKESEKQ 135 (286)
Q Consensus 111 i~ka~~Ri~eLek~Ie~Lk~eie~~ 135 (286)
+.+..+|+...+++|.+=-++....
T Consensus 57 lQqh~aRlnsqQrQI~ENhkEMKq~ 81 (114)
T 2xzr_A 57 LQQHSARLDSQQRQINENHKEMKQI 81 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344456555555554433333333
No 119
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=52.25 E-value=1.6e+02 Score=27.95 Aligned_cols=25 Identities=16% Similarity=0.229 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 153 ISDLSAKLEKLQKINDEQKSKIRKT 177 (286)
Q Consensus 153 ~~el~~k~~~Lek~~~Eqk~~i~~l 177 (286)
+......+..|+.....++..|+.+
T Consensus 100 ~~~~~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 100 ILAHENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHhhHHHHHHH
Confidence 3333344444444444444444444
No 120
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=51.95 E-value=51 Score=22.15 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=20.5
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 54 i~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
+..++....+.+.....+...+......++.....+......|...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444433
No 121
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=49.14 E-value=50 Score=27.16 Aligned_cols=11 Identities=36% Similarity=0.694 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 023185 124 QIDNLKKESEK 134 (286)
Q Consensus 124 ~Ie~Lk~eie~ 134 (286)
.+..+..++..
T Consensus 88 ~la~l~~~~~~ 98 (146)
T 2xnx_M 88 ELDQLSSEKEQ 98 (146)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhHHH
Confidence 33333333333
No 122
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.07 E-value=1.6e+02 Score=28.68 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 166 INDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 166 ~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
...+.+.++..++..+..+++++..
T Consensus 124 ~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 124 RGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555554444444443
No 123
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=48.97 E-value=92 Score=24.18 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 104 TLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALEARAIE 148 (286)
Q Consensus 104 ~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~~~e 148 (286)
+.+.-.+..+ .|+..+++.++.+.+++...+.....+....++
T Consensus 85 ~~~eA~~~l~--~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 85 NFEDAMESIK--SQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp EHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444 677777777777666666665555555544443
No 124
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=46.86 E-value=89 Score=23.40 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 023185 125 IDNLKKESEK 134 (286)
Q Consensus 125 Ie~Lk~eie~ 134 (286)
++.+..+++.
T Consensus 79 ~dnl~~~~~~ 88 (93)
T 3s4r_A 79 RDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 125
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=46.54 E-value=43 Score=20.63 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 76 AQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 76 ~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+|++..+.++-.....|++++..++
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555555555566666666666553
No 126
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=46.47 E-value=1.5e+02 Score=28.93 Aligned_cols=62 Identities=10% Similarity=0.088 Sum_probs=34.3
Q ss_pred CCchhHHHHHHHHHHHHHHHhhH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHI-DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i-~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
|-..++.+.+..+..+..-.... -....++..+|..-.+++.+++.+..+.+.+..+|....
T Consensus 42 D~~~ir~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 42 DMESLCAYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp CHHHHHHSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHhCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555444443322211 012356667777777777777777777777777766543
No 127
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=45.46 E-value=1e+02 Score=23.68 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHH
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQELKGKDEVV 75 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL~~~d~~I 75 (286)
..+++.++.+|..|+..-+.+.+++..++..|
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666555555444444444444
No 128
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=45.17 E-value=54 Score=21.33 Aligned_cols=30 Identities=23% Similarity=0.415 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 74 VVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 74 ~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
++..++....+++...+.|++.|+.++.+.
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345555555566666666666666665443
No 129
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=44.80 E-value=1.4e+02 Score=25.02 Aligned_cols=6 Identities=33% Similarity=0.385 Sum_probs=2.1
Q ss_pred hhhhHH
Q 023185 67 ELKGKD 72 (286)
Q Consensus 67 eL~~~d 72 (286)
++..+.
T Consensus 93 ql~akr 98 (175)
T 3lay_A 93 QLISKR 98 (175)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 130
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=44.59 E-value=93 Score=29.44 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=18.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 66 QELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (286)
Q Consensus 66 ~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~ 97 (286)
.++..+|..-.+++.+++.++.+.+.+..+|.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666555555555555555553
No 131
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=44.18 E-value=1e+02 Score=23.29 Aligned_cols=59 Identities=15% Similarity=0.301 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQ 135 (286)
Q Consensus 70 ~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~ 135 (286)
.+...|.+.+..+.+...=|.++.-++..+-. ..+. ..+.|++..+..++.|+.++...
T Consensus 35 erk~~i~~ie~~l~EA~ell~qMelE~r~~p~----~~R~---~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 35 EKKQMVANVEKQLEEARELLEQMDLEVREIPP----QSRG---MYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT----TTHH---HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH----HhHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555544421 1112 33368888888888888877654
No 132
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=43.39 E-value=66 Score=20.92 Aligned_cols=30 Identities=37% Similarity=0.446 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 139 KEALEARAIEAEKKISDLSAKLEKLQKIND 168 (286)
Q Consensus 139 k~eLEa~~~e~e~k~~el~~k~~~Lek~~~ 168 (286)
..+||.+..+++.+.++++.++.-|+....
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 356677777777777777776666655443
No 133
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=43.31 E-value=1.1e+02 Score=23.68 Aligned_cols=27 Identities=7% Similarity=0.254 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 123 KQIDNLKKESEKQQKEKEALEARAIEA 149 (286)
Q Consensus 123 k~Ie~Lk~eie~~~~kk~eLEa~~~e~ 149 (286)
..+..++++++...-.+-.||.+...+
T Consensus 69 ~di~~lrK~lD~~~l~r~dLE~~iesL 95 (119)
T 3ol1_A 69 NTLQSFRQDVDNASLARLDLERKVESL 95 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 345555555554444444444444333
No 134
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=43.22 E-value=1e+02 Score=23.05 Aligned_cols=25 Identities=12% Similarity=0.348 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 124 QIDNLKKESEKQQKEKEALEARAIE 148 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLEa~~~e 148 (286)
.|..|+.+++.....+..++.....
T Consensus 57 ~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 57 EMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544444444444433
No 135
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=42.61 E-value=1e+02 Score=22.80 Aligned_cols=27 Identities=19% Similarity=0.264 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 125 IDNLKKESEKQQKEKEALEARAIEAEK 151 (286)
Q Consensus 125 Ie~Lk~eie~~~~kk~eLEa~~~e~e~ 151 (286)
+..|...++.+......|+.....+..
T Consensus 67 ~~~L~~~~e~i~~~i~~le~~~~~~~~ 93 (107)
T 1fxk_A 67 TEELQEKLETLQLREKTIERQEERVMK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444433333333333333333
No 136
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=41.98 E-value=1.1e+02 Score=23.10 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023185 114 AHARADELEKQIDNLKKES 132 (286)
Q Consensus 114 a~~Ri~eLek~Ie~Lk~ei 132 (286)
.+.|++..+..++.|+.++
T Consensus 83 ~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 83 MMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3368888888888777654
No 137
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=41.67 E-value=1.4e+02 Score=24.23 Aligned_cols=10 Identities=30% Similarity=0.431 Sum_probs=3.6
Q ss_pred HHHHHHHHhh
Q 023185 51 KSKIRSLESH 60 (286)
Q Consensus 51 k~ki~eLes~ 60 (286)
+..+..+..+
T Consensus 17 ~~D~~s~~~e 26 (167)
T 4gkw_A 17 KQDTESLQKQ 26 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 138
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=41.57 E-value=1.4e+02 Score=24.22 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.+...++.++.++.+.+-..+-+-+=+.+-..+.+++++.-.--+.+|..|-.+...+|
T Consensus 15 ~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~Q 73 (167)
T 4gkw_A 15 DLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQ 73 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666666666667777777666666666666666666665
No 139
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=41.49 E-value=1.9e+02 Score=28.06 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=26.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 65 ~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
..++..+|.+-.+++..++.+..+.+.+..+|-...
T Consensus 36 ~d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~ 71 (484)
T 3lss_A 36 VDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKK 71 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466677777777777777777777777777776654
No 140
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=41.01 E-value=92 Score=29.47 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQ 135 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~ 135 (286)
+++.+...|..++.+....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~ 90 (421)
T 1ses_A 72 RGKALGEEAKRLEEALREK 90 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444455554444444
No 141
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=40.72 E-value=1.5e+02 Score=28.36 Aligned_cols=66 Identities=18% Similarity=0.173 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK---LEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 125 Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k---~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
|-.+..+..+...+.+.|.++++.+.+.+..+... ...+.....+.+.++..++..+..+++++..
T Consensus 33 ~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444555555555555555443211 1233333344444444555544444444443
No 142
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=39.79 E-value=1.4e+02 Score=23.75 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 116 ARADELEKQIDNLKKESEKQQKEKEALEAR 145 (286)
Q Consensus 116 ~Ri~eLek~Ie~Lk~eie~~~~kk~eLEa~ 145 (286)
.|+..+++.++.+..++...+.....++..
T Consensus 105 ~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~ 134 (151)
T 2zdi_C 105 KRLKEYDEAIKKTQGALAELEKRIGEVARK 134 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666655555554444444433
No 143
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=38.73 E-value=1.4e+02 Score=23.22 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKD 72 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d 72 (286)
..+.+++..+...|++.....+.|+.-.
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe 62 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAE 62 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555444444433
No 144
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=38.21 E-value=1e+02 Score=21.68 Aligned_cols=6 Identities=0% Similarity=0.451 Sum_probs=2.3
Q ss_pred HHHHHH
Q 023185 47 LDQLKS 52 (286)
Q Consensus 47 l~elk~ 52 (286)
|.+++.
T Consensus 11 l~eiRa 16 (77)
T 3trt_A 11 MRDVRQ 16 (77)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 145
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=38.01 E-value=1e+02 Score=21.56 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023185 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKK 102 (286)
Q Consensus 69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkk 102 (286)
..-+..|.++-+.-+.++.++.-+|.+|..+|.+
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 3344555555555556666666666666666543
No 146
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=37.93 E-value=2e+02 Score=27.90 Aligned_cols=66 Identities=12% Similarity=0.047 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 125 IDNLKKESEKQQKEKEALEARAIEAEKKISDLSAK---LEKLQKINDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 125 Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k---~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
|-.|-.+......+.+.|.++++.+.+.+..+... .+.+.....+.+.+|..++..+..+++++..
T Consensus 35 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 35 IIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555443221 1233333444455555555555555555544
No 147
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=37.47 E-value=78 Score=27.03 Aligned_cols=59 Identities=8% Similarity=0.086 Sum_probs=37.7
Q ss_pred ccCCchhHHHHHHHHHHHHhhhhhhhCcchhHHHHHHHHHhHHhhhhhchhhHHhhhhhhcc
Q 023185 207 SAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHVETIKAVSSF 268 (286)
Q Consensus 207 g~~l~Pwla~~~~~~~~~~~~~w~~hg~p~~~~~~~~~~~~~~~~~~~~~ph~~~~~~~~~~ 268 (286)
..-|-|....--.++...+. .-..+..|.++.+..+...+....+.| ||++.++++++.
T Consensus 137 r~~L~p~~e~lr~kl~~~~e-~lk~~l~P~~ee~~~kl~~~leeL~~~--p~~~e~~~ki~~ 195 (216)
T 2lem_A 137 QGRLSPVAEEFRDRMRTHVD-SLRTQLAPHSEQMRESLAQRLAELKSN--PTLNEYHSSAKS 195 (216)
T ss_dssp CCSCSTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhHhhHHHHHHHHHHHHHHHhCC--cchHHHHHHHHH
Confidence 33456644433333322222 223567799999999999999999998 866666666644
No 148
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=36.99 E-value=1.6e+02 Score=23.50 Aligned_cols=15 Identities=20% Similarity=0.530 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 023185 87 ERIVSLQKELSSLQK 101 (286)
Q Consensus 87 ~eI~~Lq~eI~~~qk 101 (286)
.+|+.++.++..+++
T Consensus 13 ~KvAElekkv~~lek 27 (125)
T 2pms_C 13 AKIAELENQVHRLEQ 27 (125)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 149
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.83 E-value=79 Score=20.56 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023185 81 AIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 81 ~i~e~~~eI~~Lq~eI~~~q 100 (286)
.|.....+|+....+|+.+|
T Consensus 10 kI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 150
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=36.48 E-value=93 Score=23.41 Aligned_cols=54 Identities=17% Similarity=0.352 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.=.++....+..|++-+...+.- .-.....+++..+.+++..|..|..-|...+
T Consensus 10 ~V~~D~~~ql~~l~~~~~~~~~~--~~~~~~~El~~~l~el~e~l~DL~~SI~i~e 63 (95)
T 2c5k_T 10 QVVKDTKEQLNRINNYITRHNTA--GDDDQEEEIQDILKDVEETIVDLDRSIIVMK 63 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC----CTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666665554332110 0023444555555555566666666555543
No 151
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.17 E-value=90 Score=20.43 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 75 VAQKEKAIQDKSERIVSLQKELSS 98 (286)
Q Consensus 75 I~q~e~~i~e~~~eI~~Lq~eI~~ 98 (286)
-..+++.|..+..+|+-|++++.+
T Consensus 26 eqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 26 EQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666667777777776654
No 152
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=35.67 E-value=47 Score=31.55 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHhhH
Q 023185 45 IELDQLKSKIRSLESHI 61 (286)
Q Consensus 45 ~el~elk~ki~eLes~i 61 (286)
.++.+++.++.+++..+
T Consensus 10 ~el~~~~~~~~~l~~~~ 26 (412)
T 3u06_A 10 TEVVHLRQRTEELLRCN 26 (412)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 153
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=35.62 E-value=1.2e+02 Score=21.85 Aligned_cols=37 Identities=27% Similarity=0.292 Sum_probs=23.7
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 64 KTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 64 ~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+..+|.++|.+|..++..+.-+......|..+|=++.
T Consensus 23 Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislN 59 (75)
T 3a7o_A 23 LQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGT 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhH
Confidence 3344466666666666666666666666776666554
No 154
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=35.05 E-value=63 Score=20.29 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023185 79 EKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 79 e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
+....++-..-..|++++..+
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL 27 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 333333333334444444444
No 155
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=34.93 E-value=3e+02 Score=26.09 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
--+.=+...-.+|.+.+.++..-++..+......++.+..+...+..+.+.+..+-
T Consensus 235 elleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~ 290 (413)
T 4hpq_C 235 NLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLL 290 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666677766667777777777777776665554
No 156
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=34.82 E-value=84 Score=23.79 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 023185 181 LKVAEEEMMRAKFEATSR 198 (286)
Q Consensus 181 lq~~Eeei~kle~Ea~~~ 198 (286)
.+..|++|.++..+....
T Consensus 70 Kq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 70 KDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 355667777776665543
No 157
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=34.79 E-value=1.5e+02 Score=22.47 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=18.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 62 DEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 62 ~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
+++-++.+++..-++.++.+-......|..+++.|+..
T Consensus 21 eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 21 EQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444455555555554444
No 158
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=34.73 E-value=3.2e+02 Score=26.38 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 158 AKLEKLQKINDEQKSKIRKTERALK 182 (286)
Q Consensus 158 ~k~~~Lek~~~Eqk~~i~~lE~~lq 182 (286)
+.+..|+.+.......|+.++....
T Consensus 163 ~~i~~l~~~~~~~~~~i~~l~~~~~ 187 (461)
T 3ghg_B 163 TNLRVLRSILENLRSKIQKLESDVS 187 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433
No 159
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=33.84 E-value=1.2e+02 Score=20.99 Aligned_cols=30 Identities=30% Similarity=0.228 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 70 ~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
.+......++....++..+|..|+.++..+
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444
No 160
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=33.58 E-value=88 Score=22.37 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 74 VVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 74 ~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.+..++.....+..+...|...|..++
T Consensus 37 ~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 37 QVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444333
No 161
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=33.27 E-value=1.8e+02 Score=22.97 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=14.3
Q ss_pred CCchhHHHHHHHHHHHHHHHhhHH
Q 023185 39 DSSPLKIELDQLKSKIRSLESHID 62 (286)
Q Consensus 39 ~~~~l~~el~elk~ki~eLes~i~ 62 (286)
++..+.++++++..+...|...=+
T Consensus 3 ~a~~i~~~l~~Leae~q~L~~~E~ 26 (119)
T 3etw_A 3 DAASLVGELQALDAEYQNLANQEE 26 (119)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777766666655443
No 162
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=33.19 E-value=97 Score=22.44 Aligned_cols=19 Identities=11% Similarity=0.361 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhhHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEK 64 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~ 64 (286)
++.++..||..|..-...+
T Consensus 22 EI~EID~Ki~nL~~mR~iv 40 (72)
T 2xu6_A 22 EIRDIEVEVENLRQKKEKL 40 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333
No 163
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=33.19 E-value=1.4e+02 Score=23.49 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=20.6
Q ss_pred HHHhhhhhhhCcchhHHHHHHHHHhH
Q 023185 223 SLIETHWNAHGKPAMDVAIQKALEKK 248 (286)
Q Consensus 223 ~~~~~~w~~hg~p~~~~~~~~~~~~~ 248 (286)
.......+.+...||+.|+..+..-.
T Consensus 86 ~~i~~~~~~~k~~Vv~~Ll~~V~dvk 111 (119)
T 4efa_G 86 AEIKKIAEKKKDDVVKILIETVIKPS 111 (119)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHhHHHHHHHHHHHHcCCC
Confidence 46677788899999999999887654
No 164
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=32.84 E-value=1.4e+02 Score=21.65 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKEL 96 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI 96 (286)
+++.++++...|+..+.+..... ...+...+..|..++.++..+..++
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~---~~~~~~~q~~i~~lE~eL~~~r~e~ 49 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENF---AVEAANYQDTIGRLQDEIQNMKEEM 49 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777766655443 2334444444444444444444443
No 165
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.75 E-value=42 Score=31.85 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=24.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 65 TQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 65 ~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
..++..+|..-.+++.++..+..+.+.+..+|...
T Consensus 29 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~ 63 (425)
T 2dq3_A 29 VDKVLELDKRRREIIKRLEALRSERNKLSKEIGKL 63 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777666554
No 166
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=32.37 E-value=3.7e+02 Score=26.32 Aligned_cols=11 Identities=9% Similarity=0.111 Sum_probs=4.0
Q ss_pred hhHHHHHHHHH
Q 023185 69 KGKDEVVAQKE 79 (286)
Q Consensus 69 ~~~d~~I~q~e 79 (286)
.....+|+.++
T Consensus 359 ddArNEItsae 369 (602)
T 1cii_A 359 LDARNKITSAE 369 (602)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 167
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=32.34 E-value=1.4e+02 Score=21.54 Aligned_cols=57 Identities=28% Similarity=0.335 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQKKE 103 (286)
Q Consensus 47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl 103 (286)
-+.+...+..|++...+...+|..+.+.+.=..+....+.++|=++.-+=+-++.++
T Consensus 13 ~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl 69 (75)
T 3a7o_A 13 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKL 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHH
Confidence 344555777777777777888888888888888888888888888877777776444
No 168
>3htk_B Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=32.32 E-value=1.3e+02 Score=21.14 Aligned_cols=11 Identities=9% Similarity=-0.027 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 023185 117 RADELEKQIDN 127 (286)
Q Consensus 117 Ri~eLek~Ie~ 127 (286)
|...++..+..
T Consensus 54 ~~~s~~~li~~ 64 (73)
T 3htk_B 54 MDVSMNDVIGF 64 (73)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhHHHHHHHH
Confidence 33333333333
No 169
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.19 E-value=96 Score=20.89 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhhHH
Q 023185 45 IELDQLKSKIRSLESHIDEKTQELKGKD 72 (286)
Q Consensus 45 ~el~elk~ki~eLes~i~e~~~eL~~~d 72 (286)
.+.+.++.+..+|+.++..+.+++.++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333333
No 170
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=31.14 E-value=1e+02 Score=22.14 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHH-------HHHHHHHHHHHH
Q 023185 47 LDQLKSKIRSLESHIDEKTQELKGKDE-------VVAQKEKAIQDK 85 (286)
Q Consensus 47 l~elk~ki~eLes~i~e~~~eL~~~d~-------~I~q~e~~i~e~ 85 (286)
++-.+.++..|+.++++....+..++. ++...+-..+..
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~ 49 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQEN 49 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445566666666666666555555555 555555444443
No 171
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.42 E-value=1.3e+02 Score=20.42 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
..+......++.....+..+|..|..++..+
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444
No 172
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=30.02 E-value=2e+02 Score=22.63 Aligned_cols=14 Identities=21% Similarity=0.358 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 023185 87 ERIVSLQKELSSLQ 100 (286)
Q Consensus 87 ~eI~~Lq~eI~~~q 100 (286)
+....|+.++..+.
T Consensus 9 ~~l~~Leae~q~L~ 22 (119)
T 3etw_A 9 GELQALDAEYQNLA 22 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 173
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=29.73 E-value=1.4e+02 Score=20.68 Aligned_cols=51 Identities=25% Similarity=0.358 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 47 LDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELS 97 (286)
Q Consensus 47 l~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~ 97 (286)
+.+++.++..++..+...+.++......+.........=...|..|+.++.
T Consensus 8 ~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~ 58 (65)
T 3m0d_C 8 LAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVV 58 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344566666666666555555555555555443332222333444444333
No 174
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=29.46 E-value=1.7e+02 Score=21.59 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023185 114 AHARADELEKQIDNLKKESEKQ 135 (286)
Q Consensus 114 a~~Ri~eLek~Ie~Lk~eie~~ 135 (286)
+..|.++|...|..++.+++..
T Consensus 50 ae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 50 AEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555553
No 175
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=29.36 E-value=1.9e+02 Score=22.05 Aligned_cols=29 Identities=10% Similarity=0.181 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 72 DEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 72 d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
...+.+++.-+.+.+.+.+.-+.-+..+.
T Consensus 24 q~qLT~Aq~~l~~~eaQAaTCNqTV~tL~ 52 (99)
T 3ni0_A 24 QRQLTRTQDSLLQAETQANSCNLTVVTLQ 52 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455544444444444443
No 176
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=29.25 E-value=1.7e+02 Score=21.45 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=3.9
Q ss_pred HHHHHHHhhH
Q 023185 52 SKIRSLESHI 61 (286)
Q Consensus 52 ~ki~eLes~i 61 (286)
.++..++..=
T Consensus 13 ~klq~~E~rN 22 (79)
T 3cvf_A 13 QKVQDLETRN 22 (79)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 3333444333
No 177
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=29.06 E-value=2.4e+02 Score=23.16 Aligned_cols=34 Identities=9% Similarity=0.109 Sum_probs=28.4
Q ss_pred cchhHHHHHHHHHhHHhhhhhchhhHHhhhhhhc
Q 023185 234 KPAMDVAIQKALEKKAQAGKWVQPHVETIKAVSS 267 (286)
Q Consensus 234 ~p~~~~~~~~~~~~~~~~~~~~~ph~~~~~~~~~ 267 (286)
.|+++.+-.+........+....||++-++.|++
T Consensus 143 ~p~~e~lr~~l~~~~e~lk~~l~Py~ee~k~kl~ 176 (185)
T 3r2p_A 143 SPLGEEMRDRARAHVDALRTHLAPYSDELRQRLA 176 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4567778888888888888999999999998875
No 178
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=28.80 E-value=73 Score=21.62 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 70 ~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
+.|.-|++....+..+..++..|..++..++
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666666666666665554
No 179
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=28.46 E-value=1.8e+02 Score=21.59 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHH
Q 023185 115 HARADELEKQIDN-LKKESEKQ 135 (286)
Q Consensus 115 ~~Ri~eLek~Ie~-Lk~eie~~ 135 (286)
+.|++..+..+.. ++.++..+
T Consensus 71 ~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 71 KAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3688888888888 88777655
No 180
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=28.19 E-value=2e+02 Score=21.93 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 42 PLKIELDQLKSKIRSLESHIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQK 101 (286)
Q Consensus 42 ~l~~el~elk~ki~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qk 101 (286)
.++.+|-+.+.-+...+.+..--++-...+...+......-......+..|+++|..+..
T Consensus 22 lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq 81 (99)
T 3ni0_A 22 LLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQ 81 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 345566666655555565555555666666655555544444444455555555555543
No 181
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=27.74 E-value=1.3e+02 Score=21.76 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 68 LKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 68 L~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
++.++..|.....+++.....|..++.+|..++
T Consensus 10 Vk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL~ 42 (74)
T 1avy_A 10 IKAIETDIASVRQEVNTAKGNISSLQGDVQALQ 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhheeeccccchhhhhhhhhHHHH
Confidence 344455555555555555555555555555554
No 182
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=27.47 E-value=53 Score=26.30 Aligned_cols=24 Identities=17% Similarity=0.497 Sum_probs=13.0
Q ss_pred chhHHHHHHHHHHHHHHHhhHHHH
Q 023185 41 SPLKIELDQLKSKIRSLESHIDEK 64 (286)
Q Consensus 41 ~~l~~el~elk~ki~eLes~i~e~ 64 (286)
+.+..++..++.++..|+..+..+
T Consensus 19 ~~~~~~l~~L~~~~~~L~~~l~~l 42 (168)
T 1buu_A 19 RAIEVKLANMEAEINTLKSKLELT 42 (168)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666655555443
No 183
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=27.10 E-value=1.2e+02 Score=23.55 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=22.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 67 ELKGKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 67 eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
-+..+|..+......|..+..+|..++++|.+.+
T Consensus 70 Al~ald~svt~i~~~I~~lt~~i~~~~~~i~~~~ 103 (106)
T 2yny_A 70 ALSALNTSMKQIEDKIEEILSKIYHIENEIARIK 103 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666667777777777777777776653
No 184
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.85 E-value=1.9e+02 Score=21.31 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023185 156 LSAKLEKLQKINDEQKSKIRKTE 178 (286)
Q Consensus 156 l~~k~~~Lek~~~Eqk~~i~~lE 178 (286)
+.-++..|+...-+++..+....
T Consensus 31 Lr~kv~elEnErlQyEkKLKsTK 53 (81)
T 3qh9_A 31 LKIKVEELENERNQYEWKLKATK 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhH
Confidence 33333444444444443333333
No 185
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.77 E-value=1.6e+02 Score=20.22 Aligned_cols=31 Identities=23% Similarity=0.145 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
..+......++..-..+..+|..|..++..+
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444
No 186
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.76 E-value=1.6e+02 Score=24.63 Aligned_cols=19 Identities=16% Similarity=0.475 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023185 117 RADELEKQIDNLKKESEKQ 135 (286)
Q Consensus 117 Ri~eLek~Ie~Lk~eie~~ 135 (286)
.|+.|-++|.+++.++...
T Consensus 114 kI~aL~~Ei~~Lr~qL~~~ 132 (175)
T 3lay_A 114 KINAVAKEMESLGQKLDEQ 132 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444455554444443
No 187
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=26.28 E-value=88 Score=19.44 Aligned_cols=20 Identities=15% Similarity=0.317 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023185 77 QKEKAIQDKSERIVSLQKEL 96 (286)
Q Consensus 77 q~e~~i~e~~~eI~~Lq~eI 96 (286)
..+++|+++..+-+.|+.+|
T Consensus 11 a~qqDIddlkrQN~~Le~Qi 30 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHH
Confidence 33444444444444444444
No 188
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=26.18 E-value=4e+02 Score=25.73 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 167 NDEQKSKIRKTERALKVAEEEMMR 190 (286)
Q Consensus 167 ~~Eqk~~i~~lE~~lq~~Eeei~k 190 (286)
..+.+.++..++..+..+++++..
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~ 136 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDK 136 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555444
No 189
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.27 E-value=1.2e+02 Score=18.20 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023185 78 KEKAIQDKSERIVSLQKELSS 98 (286)
Q Consensus 78 ~e~~i~e~~~eI~~Lq~eI~~ 98 (286)
+.++|..+..+|+.|.-+|..
T Consensus 7 lkqeiaalkkeiaalkfeiaa 27 (33)
T 4dzn_A 7 LKQEIAALKKEIAALKFEIAA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444433
No 190
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=25.00 E-value=1.6e+02 Score=21.29 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=17.2
Q ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 023185 54 IRSLESHIDEKTQELKGKDEVVAQKEKAIQDK 85 (286)
Q Consensus 54 i~eLes~i~e~~~eL~~~d~~I~q~e~~i~e~ 85 (286)
+..++..|..++.++......|..+|..+..+
T Consensus 10 Vk~~eT~iaa~~~ev~t~~~~l~~~e~~vqaL 41 (74)
T 1avy_A 10 IKAIETDIASVRQEVNTAKGNISSLQGDVQAL 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhheeeccccchhhhhhhhhHHH
Confidence 44555666666665555555555555444433
No 191
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=24.87 E-value=1.3e+02 Score=28.05 Aligned_cols=56 Identities=21% Similarity=0.288 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 71 KDEVVAQKEKAIQDKSERIVSLQKELSSLQKKETLNAAEQVDKAHARADELEKQIDNLKKESEKQ 135 (286)
Q Consensus 71 ~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~ 135 (286)
.+..++.++.++..+..++..++..++... . -.|.+.++++++++++.+.+.+...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~k~~~~~~~~~~~~~~~~~~~~~~ 300 (426)
T 1lrz_A 245 FDEYIKELNEERDILNKDLNKALKDIEKRP--E-------NKKAHNKRDNLQQQLDANEQKIEEG 300 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT--T-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCc--c-------cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555553221 0 1122356666777777776666654
No 192
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.72 E-value=1.2e+02 Score=21.58 Aligned_cols=9 Identities=11% Similarity=0.158 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 023185 75 VAQKEKAIQ 83 (286)
Q Consensus 75 I~q~e~~i~ 83 (286)
|.+++..+.
T Consensus 31 i~~LE~~v~ 39 (70)
T 1gd2_E 31 LKALETQVV 39 (70)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 193
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=24.36 E-value=1e+02 Score=21.98 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHhhH
Q 023185 46 ELDQLKSKIRSLESHI 61 (286)
Q Consensus 46 el~elk~ki~eLes~i 61 (286)
.+......|.+|+...
T Consensus 19 ~i~~Kde~I~eLE~~L 34 (67)
T 1zxa_A 19 ILMLKEERIKELEKRL 34 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHH
Confidence 3333344444444333
No 194
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=23.96 E-value=1.4e+02 Score=18.70 Aligned_cols=22 Identities=9% Similarity=0.318 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023185 78 KEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 78 ~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
++....++-..-..|++++..+
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHH
Confidence 3333333333444444444444
No 195
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.40 E-value=1.5e+02 Score=19.02 Aligned_cols=21 Identities=43% Similarity=0.528 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023185 140 EALEARAIEAEKKISDLSAKL 160 (286)
Q Consensus 140 ~eLEa~~~e~e~k~~el~~k~ 160 (286)
..|++..+.+++++..+.+++
T Consensus 23 aaleselqalekklaalkskl 43 (48)
T 1g6u_A 23 AALESELQALEKKLAALKSKL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 196
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=23.12 E-value=3.8e+02 Score=23.38 Aligned_cols=57 Identities=19% Similarity=0.231 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 140 EALEARAIEAEKKISDLSAKLEKLQKINDEQKSKIRKTERALKVAEEEMMRAKFEAT 196 (286)
Q Consensus 140 ~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~ 196 (286)
.-+-.+.+.+..++..++..+.+.+.....+.+.+.+..+++..+-+..++.-.+..
T Consensus 167 ~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (228)
T 3q0x_A 167 QFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEVQ 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeee
Confidence 345555566666666677777777777777777777777777777777777655544
No 197
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=22.99 E-value=2.6e+02 Score=21.43 Aligned_cols=12 Identities=8% Similarity=0.077 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 023185 88 RIVSLQKELSSL 99 (286)
Q Consensus 88 eI~~Lq~eI~~~ 99 (286)
.|-.....|.++
T Consensus 28 aig~~d~ri~~N 39 (114)
T 2xzr_A 28 LIGAIDGRVTRN 39 (114)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhhhhHHHHhh
Confidence 333333333333
No 198
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=22.89 E-value=3.9e+02 Score=23.45 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 80 KAIQDKSERIVSLQKELSSLQKKE--TLNAAEQVDKAHARADELEKQIDNLKKESEKQQKEKEALE 143 (286)
Q Consensus 80 ~~i~e~~~eI~~Lq~eI~~~qkkl--~~~~~eqi~ka~~Ri~eLek~Ie~Lk~eie~~~~kk~eLE 143 (286)
..|.++.+++..|-.++..++... .++..+-.+| .||..+.-|...+..+..+..+...|+
T Consensus 62 ddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK---~IR~~E~svqp~R~~R~~l~~~I~kLk 124 (234)
T 3plt_A 62 DDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLK---SIRNIEASVQPSRDRKEKITDEIAHLK 124 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 467777777788888877776544 4555555555 677777777776666666655555444
No 199
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.66 E-value=1.2e+02 Score=17.50 Aligned_cols=12 Identities=33% Similarity=0.526 Sum_probs=4.5
Q ss_pred HHHHHHHHHHhh
Q 023185 49 QLKSKIRSLESH 60 (286)
Q Consensus 49 elk~ki~eLes~ 60 (286)
-+.++|..|..+
T Consensus 11 aleqkiaalkqk 22 (28)
T 3ra3_A 11 ALEQKIAALKQK 22 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 200
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=22.18 E-value=2.6e+02 Score=21.46 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 124 QIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (286)
Q Consensus 124 ~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~L 163 (286)
....|...+..+..++-.|+.+.....-.+++|+.++.++
T Consensus 50 ~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 50 KAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444444444444444555554444444444555444443
No 201
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=22.15 E-value=2.7e+02 Score=21.40 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKL 163 (286)
Q Consensus 121 Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~L 163 (286)
|+.....|...+..+..++-.|+.+.....-.+++|+.++.++
T Consensus 47 L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 47 LRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 3344555555555555555555555555555555555555443
No 202
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=22.13 E-value=2.7e+02 Score=21.38 Aligned_cols=50 Identities=20% Similarity=0.239 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 121 LEKQIDNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQ 170 (286)
Q Consensus 121 Lek~Ie~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eq 170 (286)
...-|..|...|.........++...........+....+..+++-.+.+
T Consensus 72 ~~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er~ 121 (150)
T 3ajw_A 72 YQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDRQ 121 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555555555554444444445555555554444433
No 203
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=21.90 E-value=2.6e+02 Score=20.99 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023185 150 EKKISDLSAKLEKLQKI-N-DEQKSKIRKTERALKVAEEEMMRAKFEATSR 198 (286)
Q Consensus 150 e~k~~el~~k~~~Lek~-~-~Eqk~~i~~lE~~lq~~Eeei~kle~Ea~~~ 198 (286)
.....++..++..+... . .+.+..+.+++..+..+++-+.++..|++..
T Consensus 25 ~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 25 RGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444445555544322 2 5677788889999999999998888887643
No 204
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=21.57 E-value=2.9e+02 Score=21.55 Aligned_cols=55 Identities=16% Similarity=0.382 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 023185 46 ELDQLKSKIRSLESHIDEKTQELKGKDEVVAQ-----KEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 46 el~elk~ki~eLes~i~e~~~eL~~~d~~I~q-----~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
.+.+++..+...|+++....+.|+.-...-.. ..+-+..++..+..++++|..++
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLK 82 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELK 82 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555555544433321 22334455555555555555554
No 205
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=21.55 E-value=2.8e+02 Score=21.30 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhh
Q 023185 44 KIELDQLKSKIRSLESHIDEKTQEL 68 (286)
Q Consensus 44 ~~el~elk~ki~eLes~i~e~~~eL 68 (286)
...+.....++..|.....+....+
T Consensus 32 ~~~~~~~~~~L~~L~~~~~~y~~~~ 56 (150)
T 3ajw_A 32 RRGCQQAEEQLKMLIDYQNEYRSNL 56 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443333
No 206
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=21.37 E-value=4.1e+02 Score=24.91 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 70 GKDEVVAQKEKAIQDKSERIVSLQKELSSLQ 100 (286)
Q Consensus 70 ~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~q 100 (286)
..+.+|...-.+|+.+-.+|+.|+.+|...+
T Consensus 93 ~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~ 123 (463)
T 2d4y_A 93 QVNIAIGSSVAQINNYAKQIANLNDQISRMT 123 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467788888888899999999999997664
No 207
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=21.21 E-value=73 Score=29.31 Aligned_cols=31 Identities=16% Similarity=0.345 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 69 KGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 69 ~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
...+..|..++..+..++.+|..|...|..+
T Consensus 14 l~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l 44 (319)
T 1fzc_C 14 LTHDSSIRYLQEIYNSNNQKIVNLKEKVAQL 44 (319)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444
No 208
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=21.01 E-value=3.2e+02 Score=21.79 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=14.8
Q ss_pred hHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023185 60 HIDEKTQELKGKDEVVAQKEKAIQDKSERIVSLQKELSSL 99 (286)
Q Consensus 60 ~i~e~~~eL~~~d~~I~q~e~~i~e~~~eI~~Lq~eI~~~ 99 (286)
..+.+..+...+...+.........+...+..|....+.+
T Consensus 30 eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L 69 (155)
T 2oto_A 30 ENKDLKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDL 69 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333444444443333333
No 209
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=20.89 E-value=4.3e+02 Score=23.28 Aligned_cols=224 Identities=12% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHhhh-hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 023185 48 DQLKSKIRSLESHIDEKTQELK-GKDEVVAQKEKAIQDKSERI-VSLQKELSSLQKKETLNAAEQVDKAHARADELEKQI 125 (286)
Q Consensus 48 ~elk~ki~eLes~i~e~~~eL~-~~d~~I~q~e~~i~e~~~eI-~~Lq~eI~~~qkkl~~~~~eqi~ka~~Ri~eLek~I 125 (286)
.++...+.++...+.-...++. .+...+......+.-...++ ..+...++.++.++....++-..+....+.+|+..+
T Consensus 18 ~~l~~~~eel~~~L~P~~~~l~~~l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L 97 (273)
T 3s84_A 18 EEIGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRMERVLRENADSLQASL 97 (273)
T ss_dssp HHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023185 126 ----DNLKKESEKQQKEKEALEARAIEAEKKISDLSAKLEKLQKINDEQ-----KSKIRKTERALKVAEEEMMRAKFEAT 196 (286)
Q Consensus 126 ----e~Lk~eie~~~~kk~eLEa~~~e~e~k~~el~~k~~~Lek~~~Eq-----k~~i~~lE~~lq~~Eeei~kle~Ea~ 196 (286)
+.++..+... ++.-+..+.....++..++..--....+. ...-.++......+...+...-.+..
T Consensus 98 ~p~~eelr~kl~~~------veelk~~L~Py~eelr~k~~~~leeLr~~l~P~ae~~~~kl~~~~e~L~~ql~~~a~~L~ 171 (273)
T 3s84_A 98 RPHADELKAKIDQN------VEELKGRLTPYADEFKVKIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELK 171 (273)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh------HHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHhhhhccCCchhHHHHHHHHHHHHhhhhhhhCcchhHHHHHHHHHhHHhhhhhchhhHH-----------hhhhh
Q 023185 197 SRSKELTEVHSAWLPPWLAVHLLQCQSLIETHWNAHGKPAMDVAIQKALEKKAQAGKWVQPHVE-----------TIKAV 265 (286)
Q Consensus 197 ~~a~ql~~~~g~~l~Pwla~~~~~~~~~~~~~w~~hg~p~~~~~~~~~~~~~~~~~~~~~ph~~-----------~~~~~ 265 (286)
.....- +..|--||.-....+.+-..+.|.+= .+-+..+....-.....++.=..||++ -++.+
T Consensus 172 ~~l~~~----~eeLr~~L~p~ae~lr~~l~~~~e~l-~~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~ 246 (273)
T 3s84_A 172 ARISAS----AEELRQRLAPLAEDVRGNLRGNTEGL-QKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQK 246 (273)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHTSSSCHHHH-HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q ss_pred hccCcCchHHHHHHHHH
Q 023185 266 SSFSYSSIPEILKYIEE 282 (286)
Q Consensus 266 ~~~~~~~~~~~~~~~~~ 282 (286)
+++..+.+-.-+.|.+.
T Consensus 247 l~~~~~~~~~~~~~~~~ 263 (273)
T 3s84_A 247 LGPHAGDVEGHLSFLEK 263 (273)
T ss_dssp HSCC-------------
T ss_pred hCcchhhHHhhhhHHHH
No 210
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=20.17 E-value=47 Score=23.73 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=16.7
Q ss_pred hhhccCcCchHHHHHHHHHh
Q 023185 264 AVSSFSYSSIPEILKYIEEL 283 (286)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~ 283 (286)
..|.|+..+|+++..||.+|
T Consensus 31 r~V~Y~~asi~~L~~~I~~l 50 (68)
T 1hyw_A 31 RRVEFTATSVSDLKKYIAEL 50 (68)
T ss_dssp CEEEECTTTHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHH
Confidence 35677788999999999876
Done!