Query 023186
Match_columns 286
No_of_seqs 348 out of 1908
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:05:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023186.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023186hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0149 Predicted RNA-binding 99.9 1.7E-24 3.6E-29 189.8 15.3 92 14-105 4-96 (247)
2 PLN03134 glycine-rich RNA-bind 99.9 7.3E-21 1.6E-25 159.0 15.0 83 19-101 31-114 (144)
3 TIGR01659 sex-lethal sex-letha 99.8 5.4E-18 1.2E-22 160.4 15.3 83 19-101 190-275 (346)
4 TIGR01659 sex-lethal sex-letha 99.7 2E-17 4.3E-22 156.6 12.1 84 17-100 102-186 (346)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 4.4E-17 9.6E-22 153.1 12.8 84 19-102 266-350 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1E-16 2.2E-21 150.7 11.6 81 21-101 2-83 (352)
7 KOG0125 Ataxin 2-binding prote 99.7 9.5E-17 2.1E-21 146.7 9.2 88 17-106 91-179 (376)
8 KOG0122 Translation initiation 99.7 2.1E-16 4.6E-21 139.5 10.6 84 18-101 185-269 (270)
9 KOG0121 Nuclear cap-binding pr 99.7 1.7E-16 3.7E-21 127.8 8.2 80 20-99 34-114 (153)
10 PF00076 RRM_1: RNA recognitio 99.7 5.9E-16 1.3E-20 111.4 9.2 69 25-94 1-70 (70)
11 TIGR01648 hnRNP-R-Q heterogene 99.6 8.1E-15 1.8E-19 146.3 16.8 76 21-104 232-310 (578)
12 KOG0117 Heterogeneous nuclear 99.6 7.5E-15 1.6E-19 138.9 15.0 80 21-108 258-338 (506)
13 KOG0113 U1 small nuclear ribon 99.6 3.4E-15 7.4E-20 135.1 11.9 95 17-111 96-191 (335)
14 KOG0107 Alternative splicing f 99.6 5.8E-15 1.3E-19 124.8 9.8 78 20-102 8-86 (195)
15 PF14259 RRM_6: RNA recognitio 99.6 6.1E-15 1.3E-19 107.1 8.3 69 25-94 1-70 (70)
16 TIGR01645 half-pint poly-U bin 99.6 1.1E-14 2.3E-19 145.9 12.5 81 20-100 202-283 (612)
17 KOG4207 Predicted splicing fac 99.6 9.7E-15 2.1E-19 126.3 9.4 88 16-103 7-95 (256)
18 PLN03120 nucleic acid binding 99.6 1.2E-14 2.7E-19 131.1 10.5 75 22-99 4-78 (260)
19 TIGR01645 half-pint poly-U bin 99.6 9.6E-15 2.1E-19 146.2 10.2 79 20-98 105-184 (612)
20 KOG0105 Alternative splicing f 99.6 2.3E-14 5E-19 122.2 10.6 78 20-100 4-82 (241)
21 KOG0148 Apoptosis-promoting RN 99.6 1.2E-14 2.5E-19 130.2 8.5 84 16-99 56-140 (321)
22 TIGR01628 PABP-1234 polyadenyl 99.6 2.2E-14 4.8E-19 143.5 11.6 76 24-99 2-78 (562)
23 TIGR01628 PABP-1234 polyadenyl 99.5 2.5E-14 5.5E-19 143.1 10.4 83 19-102 282-365 (562)
24 KOG0111 Cyclophilin-type pepti 99.5 7.4E-15 1.6E-19 128.2 5.4 88 18-105 6-94 (298)
25 KOG0148 Apoptosis-promoting RN 99.5 1.2E-13 2.7E-18 123.7 13.2 77 19-101 161-238 (321)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1E-13 2.3E-18 136.6 12.8 82 20-101 293-375 (509)
27 TIGR01622 SF-CC1 splicing fact 99.5 7.9E-14 1.7E-18 135.8 11.1 82 19-100 86-167 (457)
28 TIGR01648 hnRNP-R-Q heterogene 99.5 6.8E-14 1.5E-18 139.7 10.2 76 20-96 56-133 (578)
29 TIGR01622 SF-CC1 splicing fact 99.5 1.5E-13 3.2E-18 133.9 11.8 78 22-99 186-264 (457)
30 smart00362 RRM_2 RNA recogniti 99.5 2.1E-13 4.6E-18 96.7 9.4 71 24-96 1-72 (72)
31 smart00360 RRM RNA recognition 99.5 1.8E-13 3.9E-18 96.7 9.0 70 27-96 1-71 (71)
32 COG0724 RNA-binding proteins ( 99.5 1.7E-13 3.8E-18 120.2 10.2 78 22-99 115-193 (306)
33 PLN03213 repressor of silencin 99.5 1.3E-13 2.8E-18 132.0 9.9 78 19-100 7-87 (759)
34 KOG0144 RNA-binding protein CU 99.5 8.4E-14 1.8E-18 131.4 7.7 86 17-102 29-118 (510)
35 KOG0131 Splicing factor 3b, su 99.5 1E-13 2.2E-18 118.0 6.9 82 18-99 5-87 (203)
36 PLN03121 nucleic acid binding 99.5 3.2E-13 7E-18 120.3 10.5 76 21-99 4-79 (243)
37 KOG0108 mRNA cleavage and poly 99.4 2E-13 4.3E-18 132.0 8.0 83 23-105 19-102 (435)
38 KOG0145 RNA-binding protein EL 99.4 3.5E-13 7.7E-18 120.3 8.8 85 19-103 38-123 (360)
39 KOG0144 RNA-binding protein CU 99.4 1E-13 2.3E-18 130.7 5.3 87 20-107 122-212 (510)
40 KOG4205 RNA-binding protein mu 99.4 1.5E-13 3.4E-18 127.6 5.7 86 21-106 5-90 (311)
41 KOG0117 Heterogeneous nuclear 99.4 5.3E-13 1.1E-17 126.5 9.2 79 20-98 81-161 (506)
42 cd00590 RRM RRM (RNA recogniti 99.4 1.9E-12 4.2E-17 92.2 9.9 73 24-97 1-74 (74)
43 KOG0126 Predicted RNA-binding 99.4 3.8E-14 8.3E-19 120.5 0.2 80 20-99 33-113 (219)
44 KOG0109 RNA-binding protein LA 99.4 6.2E-13 1.3E-17 120.3 6.7 71 23-101 3-74 (346)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 3.3E-12 7.2E-17 126.0 12.1 78 19-101 272-351 (481)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 3.6E-12 7.8E-17 125.7 11.1 75 21-101 1-78 (481)
47 KOG0127 Nucleolar protein fibr 99.3 2.3E-12 5.1E-17 124.7 8.9 84 19-102 289-379 (678)
48 KOG0130 RNA-binding protein RB 99.3 3.2E-12 6.8E-17 104.2 8.3 86 16-101 66-152 (170)
49 KOG0116 RasGAP SH3 binding pro 99.3 8.9E-12 1.9E-16 120.0 12.7 86 20-105 286-371 (419)
50 KOG4212 RNA-binding protein hn 99.3 8.2E-12 1.8E-16 118.2 10.4 80 20-100 42-123 (608)
51 smart00361 RRM_1 RNA recogniti 99.3 1.1E-11 2.4E-16 90.8 8.1 61 36-96 2-70 (70)
52 KOG4205 RNA-binding protein mu 99.3 4.4E-12 9.5E-17 118.0 6.8 87 21-107 96-182 (311)
53 KOG0146 RNA-binding protein ET 99.3 4.1E-12 8.8E-17 113.9 5.7 86 17-102 280-366 (371)
54 KOG0109 RNA-binding protein LA 99.3 7E-12 1.5E-16 113.5 6.1 83 16-106 72-155 (346)
55 KOG0114 Predicted RNA-binding 99.3 3.3E-11 7.1E-16 94.2 8.7 80 17-99 13-93 (124)
56 PF13893 RRM_5: RNA recognitio 99.2 4.6E-11 1E-15 83.4 7.9 55 39-98 1-56 (56)
57 KOG0127 Nucleolar protein fibr 99.2 2.7E-11 5.9E-16 117.4 8.4 79 22-101 117-196 (678)
58 KOG0415 Predicted peptidyl pro 99.2 1.7E-11 3.7E-16 113.5 6.5 81 20-100 237-318 (479)
59 KOG0153 Predicted RNA-binding 99.2 4.4E-11 9.5E-16 110.6 8.7 81 14-100 220-302 (377)
60 KOG0124 Polypyrimidine tract-b 99.2 1.1E-11 2.4E-16 115.2 4.5 78 21-98 112-190 (544)
61 KOG0145 RNA-binding protein EL 99.2 1.3E-10 2.8E-15 104.0 10.2 85 16-100 272-357 (360)
62 KOG0123 Polyadenylate-binding 99.2 8.4E-11 1.8E-15 112.3 9.0 82 23-107 77-159 (369)
63 KOG0131 Splicing factor 3b, su 99.2 6.9E-11 1.5E-15 100.8 6.8 80 22-101 96-177 (203)
64 KOG0147 Transcriptional coacti 99.2 4.1E-11 9E-16 116.2 6.2 81 22-102 278-359 (549)
65 KOG0146 RNA-binding protein ET 99.1 1.9E-10 4.1E-15 103.3 6.2 83 21-104 18-104 (371)
66 TIGR01642 U2AF_lg U2 snRNP aux 99.0 6.9E-10 1.5E-14 109.5 9.3 75 17-98 170-257 (509)
67 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.6E-09 3.4E-14 105.7 10.0 81 20-100 403-484 (940)
68 KOG0132 RNA polymerase II C-te 99.0 8.4E-10 1.8E-14 110.7 7.8 72 22-99 421-493 (894)
69 KOG4208 Nucleolar RNA-binding 99.0 1.8E-09 3.9E-14 93.8 8.7 86 16-101 43-130 (214)
70 KOG0226 RNA-binding proteins [ 99.0 4.1E-10 8.8E-15 100.5 4.0 83 18-100 186-269 (290)
71 KOG0124 Polypyrimidine tract-b 99.0 1E-09 2.2E-14 102.3 6.3 81 19-99 207-288 (544)
72 KOG0533 RRM motif-containing p 98.9 3.3E-09 7.1E-14 95.5 9.2 85 18-103 79-164 (243)
73 KOG4212 RNA-binding protein hn 98.9 1.9E-09 4.1E-14 102.4 7.0 74 19-97 533-607 (608)
74 KOG4206 Spliceosomal protein s 98.9 4.3E-09 9.2E-14 92.6 8.6 80 20-102 7-91 (221)
75 KOG0110 RNA-binding protein (R 98.9 1.4E-09 3E-14 108.4 4.7 84 18-101 609-693 (725)
76 KOG0110 RNA-binding protein (R 98.9 5.5E-09 1.2E-13 104.2 8.2 79 21-99 514-596 (725)
77 KOG1457 RNA binding protein (c 98.8 2.4E-08 5.1E-13 87.9 9.6 87 20-106 32-123 (284)
78 KOG4209 Splicing factor RNPS1, 98.8 1.1E-08 2.3E-13 92.0 6.7 84 17-101 96-180 (231)
79 KOG0123 Polyadenylate-binding 98.8 1.6E-08 3.5E-13 96.7 8.0 71 23-99 2-73 (369)
80 KOG4211 Splicing factor hnRNP- 98.7 5.1E-08 1.1E-12 94.0 9.0 79 18-99 6-84 (510)
81 KOG4454 RNA binding protein (R 98.7 7.4E-09 1.6E-13 90.8 2.0 78 20-99 7-85 (267)
82 KOG4660 Protein Mei2, essentia 98.6 4.8E-08 1E-12 95.4 4.4 72 18-94 71-143 (549)
83 KOG0106 Alternative splicing f 98.6 5E-08 1.1E-12 86.3 4.0 69 23-99 2-71 (216)
84 KOG1548 Transcription elongati 98.6 3.2E-07 6.9E-12 85.3 9.1 83 18-101 130-221 (382)
85 KOG0151 Predicted splicing reg 98.4 3.1E-07 6.7E-12 91.9 6.4 83 18-100 170-256 (877)
86 KOG1995 Conserved Zn-finger pr 98.4 1.3E-06 2.8E-11 81.7 8.0 86 17-102 61-155 (351)
87 PF04059 RRM_2: RNA recognitio 98.4 3.6E-06 7.8E-11 65.8 9.3 78 23-100 2-86 (97)
88 KOG4211 Splicing factor hnRNP- 98.3 1.5E-06 3.3E-11 84.0 7.7 79 20-99 101-180 (510)
89 KOG0120 Splicing factor U2AF, 98.2 2.4E-06 5.2E-11 83.9 5.3 90 14-103 281-371 (500)
90 KOG4849 mRNA cleavage factor I 98.1 7.8E-06 1.7E-10 76.3 7.8 77 19-95 77-156 (498)
91 KOG0147 Transcriptional coacti 98.1 1.1E-06 2.4E-11 85.8 2.1 85 16-100 173-257 (549)
92 PF08777 RRM_3: RNA binding mo 98.0 9.3E-06 2E-10 64.4 5.4 70 23-98 2-77 (105)
93 KOG4210 Nuclear localization s 98.0 6.5E-06 1.4E-10 76.3 4.5 80 21-100 183-263 (285)
94 KOG0106 Alternative splicing f 98.0 6.9E-06 1.5E-10 72.8 4.3 73 18-98 95-168 (216)
95 KOG1190 Polypyrimidine tract-b 98.0 6.3E-05 1.4E-09 71.6 10.9 74 22-100 297-372 (492)
96 PF11608 Limkain-b1: Limkain b 98.0 3.6E-05 7.7E-10 58.3 7.3 67 23-99 3-75 (90)
97 KOG1855 Predicted RNA-binding 97.8 2E-05 4.2E-10 75.3 4.8 70 18-87 227-309 (484)
98 KOG1457 RNA binding protein (c 97.8 2.5E-05 5.3E-10 69.2 4.8 64 18-85 206-269 (284)
99 PF14605 Nup35_RRM_2: Nup53/35 97.8 5.8E-05 1.3E-09 52.4 5.5 52 23-81 2-53 (53)
100 KOG0129 Predicted RNA-binding 97.6 0.00019 4.1E-09 70.1 8.2 69 16-84 364-433 (520)
101 KOG4307 RNA binding protein RB 97.6 0.00018 4E-09 72.4 7.8 81 17-97 862-943 (944)
102 KOG1190 Polypyrimidine tract-b 97.6 6.1E-05 1.3E-09 71.7 4.1 73 21-99 27-102 (492)
103 KOG0129 Predicted RNA-binding 97.6 0.00022 4.8E-09 69.7 7.5 64 20-84 257-326 (520)
104 KOG4206 Spliceosomal protein s 97.5 0.00038 8.3E-09 61.6 7.4 75 19-98 143-219 (221)
105 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00064 1.4E-08 53.4 7.2 80 19-99 3-90 (100)
106 KOG0105 Alternative splicing f 97.3 0.002 4.4E-08 55.8 10.0 75 16-97 109-186 (241)
107 COG5175 MOT2 Transcriptional r 97.3 0.00053 1.2E-08 64.0 6.6 78 22-99 114-201 (480)
108 KOG1456 Heterogeneous nuclear 97.2 0.0021 4.6E-08 60.9 9.4 80 15-99 280-361 (494)
109 KOG2314 Translation initiation 97.2 0.0017 3.6E-08 64.3 8.5 78 20-98 56-141 (698)
110 PF10309 DUF2414: Protein of u 97.1 0.0025 5.5E-08 45.7 7.2 57 20-84 3-62 (62)
111 KOG1548 Transcription elongati 97.1 0.0032 6.9E-08 59.1 9.1 77 18-98 261-349 (382)
112 KOG1365 RNA-binding protein Fu 96.9 0.0017 3.7E-08 61.7 5.7 78 22-100 280-361 (508)
113 KOG1365 RNA-binding protein Fu 96.9 0.0012 2.7E-08 62.6 4.4 77 20-97 159-239 (508)
114 KOG0120 Splicing factor U2AF, 96.8 0.0032 7E-08 62.3 7.3 62 37-98 424-489 (500)
115 KOG0128 RNA-binding protein SA 96.8 0.00063 1.4E-08 70.0 2.3 81 22-103 736-817 (881)
116 PF08952 DUF1866: Domain of un 96.8 0.0045 9.7E-08 51.7 6.6 57 38-102 52-108 (146)
117 KOG3152 TBP-binding protein, a 96.7 0.0016 3.5E-08 58.8 3.5 72 21-92 73-157 (278)
118 KOG4676 Splicing factor, argin 96.6 0.0029 6.2E-08 60.2 4.9 79 20-98 5-86 (479)
119 KOG0115 RNA-binding protein p5 96.4 0.0029 6.4E-08 57.1 3.7 62 23-85 32-93 (275)
120 KOG0128 RNA-binding protein SA 96.4 0.00013 2.9E-09 74.7 -5.7 70 21-90 666-735 (881)
121 KOG2202 U2 snRNP splicing fact 96.3 0.0019 4.1E-08 58.3 2.0 62 37-99 83-146 (260)
122 KOG1996 mRNA splicing factor [ 96.2 0.014 3.1E-07 53.8 7.0 62 36-97 300-363 (378)
123 KOG2193 IGF-II mRNA-binding pr 96.2 0.003 6.6E-08 60.7 2.5 76 23-105 2-80 (584)
124 KOG1456 Heterogeneous nuclear 96.2 0.012 2.7E-07 55.8 6.4 78 16-99 25-105 (494)
125 KOG2591 c-Mpl binding protein, 96.1 0.0099 2.1E-07 58.9 5.7 75 18-99 171-250 (684)
126 KOG4307 RNA binding protein RB 96.1 0.0059 1.3E-07 61.9 4.0 81 16-97 428-510 (944)
127 PF08675 RNA_bind: RNA binding 96.1 0.017 3.7E-07 43.8 5.6 55 22-85 9-63 (87)
128 PF15023 DUF4523: Protein of u 95.7 0.076 1.7E-06 44.3 8.5 77 16-99 80-160 (166)
129 KOG0112 Large RNA-binding prot 95.0 0.027 5.8E-07 58.7 4.5 78 18-101 451-531 (975)
130 KOG2416 Acinus (induces apopto 95.0 0.023 5E-07 56.8 3.9 79 15-99 437-520 (718)
131 KOG0112 Large RNA-binding prot 94.6 0.0079 1.7E-07 62.5 -0.6 67 18-85 368-434 (975)
132 KOG2253 U1 snRNP complex, subu 94.3 0.034 7.3E-07 56.3 3.1 73 17-98 35-108 (668)
133 KOG4285 Mitotic phosphoprotein 94.3 0.15 3.3E-06 47.3 7.1 71 22-99 197-268 (350)
134 KOG2068 MOT2 transcription fac 94.3 0.017 3.8E-07 54.0 1.0 78 22-99 77-161 (327)
135 KOG2135 Proteins containing th 93.5 0.057 1.2E-06 52.8 2.9 73 22-100 372-445 (526)
136 KOG4210 Nuclear localization s 93.0 0.072 1.6E-06 49.5 2.6 79 21-99 87-166 (285)
137 PF03880 DbpA: DbpA RNA bindin 93.0 0.61 1.3E-05 34.2 7.1 58 32-98 11-74 (74)
138 PF04847 Calcipressin: Calcipr 91.7 0.55 1.2E-05 40.9 6.4 59 35-99 8-69 (184)
139 PF03467 Smg4_UPF3: Smg-4/UPF3 91.6 0.18 3.8E-06 43.6 3.3 81 19-99 4-96 (176)
140 KOG4574 RNA-binding protein (c 90.2 0.2 4.4E-06 52.2 2.6 72 24-101 300-374 (1007)
141 KOG4660 Protein Mei2, essentia 88.3 0.89 1.9E-05 45.4 5.5 54 46-99 413-471 (549)
142 PF07576 BRAP2: BRCA1-associat 88.0 8.2 0.00018 30.8 9.9 62 23-86 14-76 (110)
143 KOG4454 RNA binding protein (R 84.1 0.21 4.5E-06 44.6 -1.1 68 16-84 74-145 (267)
144 PRK11634 ATP-dependent RNA hel 82.4 5.5 0.00012 41.1 8.2 67 23-99 487-561 (629)
145 KOG4676 Splicing factor, argin 82.1 0.13 2.9E-06 49.2 -3.3 63 22-88 151-213 (479)
146 KOG0921 Dosage compensation co 81.1 13 0.00027 40.0 10.1 7 126-132 1188-1194(1282)
147 smart00596 PRE_C2HC PRE_C2HC d 80.9 3.2 6.9E-05 30.4 4.2 59 37-98 2-62 (69)
148 PF07530 PRE_C2HC: Associated 80.7 4 8.7E-05 29.6 4.7 60 37-99 2-63 (68)
149 KOG4483 Uncharacterized conser 79.6 4.9 0.00011 39.0 6.2 61 18-85 387-448 (528)
150 PF03468 XS: XS domain; Inter 78.7 4.6 0.0001 32.4 5.0 48 34-84 29-77 (116)
151 PF10567 Nab6_mRNP_bdg: RNA-re 78.5 5.7 0.00012 37.0 6.0 83 18-100 11-107 (309)
152 KOG4410 5-formyltetrahydrofola 77.8 3.8 8.3E-05 38.0 4.7 48 22-75 330-378 (396)
153 PF11767 SET_assoc: Histone ly 77.2 12 0.00026 27.1 6.3 54 33-95 11-65 (66)
154 PF15513 DUF4651: Domain of un 74.2 6.9 0.00015 28.0 4.2 18 37-54 9-26 (62)
155 KOG2318 Uncharacterized conser 64.8 33 0.00072 34.9 8.2 80 19-98 171-305 (650)
156 KOG2193 IGF-II mRNA-binding pr 60.8 1.4 3E-05 42.9 -2.0 76 20-99 78-155 (584)
157 PF08206 OB_RNB: Ribonuclease 60.7 1.7 3.6E-05 30.4 -1.1 37 63-99 7-44 (58)
158 PRK11901 hypothetical protein; 59.0 14 0.0003 35.0 4.2 63 21-88 244-308 (327)
159 KOG2295 C2H2 Zn-finger protein 58.9 1.6 3.5E-05 43.7 -2.0 66 20-85 229-294 (648)
160 KOG0804 Cytoplasmic Zn-finger 57.7 44 0.00096 33.1 7.5 64 21-86 73-137 (493)
161 COG0724 RNA-binding proteins ( 56.4 15 0.00032 31.4 3.9 61 17-77 220-280 (306)
162 KOG2891 Surface glycoprotein [ 53.0 14 0.00031 34.3 3.2 37 20-56 147-195 (445)
163 KOG4019 Calcineurin-mediated s 52.9 15 0.00032 32.0 3.1 74 20-99 8-88 (193)
164 PF15063 TC1: Thyroid cancer p 52.2 9.2 0.0002 28.4 1.5 58 15-84 18-78 (79)
165 PF02714 DUF221: Domain of unk 48.0 22 0.00047 33.0 3.8 33 67-100 1-33 (325)
166 KOG4008 rRNA processing protei 45.7 14 0.0003 33.5 1.9 35 18-52 36-70 (261)
167 PRK10629 EnvZ/OmpR regulon mod 43.9 1.7E+02 0.0037 23.8 7.9 69 23-99 36-109 (127)
168 PF00403 HMA: Heavy-metal-asso 43.9 1E+02 0.0022 20.9 6.7 56 24-85 1-60 (62)
169 PF07292 NID: Nmi/IFP 35 domai 42.5 34 0.00074 26.2 3.4 33 67-99 1-35 (88)
170 PF09707 Cas_Cas2CT1978: CRISP 42.4 60 0.0013 24.7 4.7 50 21-73 24-73 (86)
171 PF07292 NID: Nmi/IFP 35 domai 41.1 13 0.00028 28.5 0.9 25 19-43 49-73 (88)
172 TIGR03636 L23_arch archaeal ri 40.5 82 0.0018 23.4 5.1 58 24-84 15-74 (77)
173 PF11411 DNA_ligase_IV: DNA li 40.0 20 0.00043 22.8 1.5 16 32-47 19-34 (36)
174 PF14026 DUF4242: Protein of u 38.6 86 0.0019 23.1 5.0 61 25-85 3-68 (77)
175 PRK14548 50S ribosomal protein 38.0 85 0.0019 23.8 4.9 58 24-84 22-81 (84)
176 PF08734 GYD: GYD domain; Int 37.0 1.4E+02 0.003 22.6 6.1 45 36-84 22-67 (91)
177 COG5193 LHP1 La protein, small 36.6 14 0.0003 35.9 0.5 61 22-82 174-244 (438)
178 PF01071 GARS_A: Phosphoribosy 34.9 1.3E+02 0.0028 26.4 6.3 47 34-84 24-70 (194)
179 COG4874 Uncharacterized protei 34.7 68 0.0015 29.4 4.5 31 18-49 154-184 (318)
180 COG4010 Uncharacterized protei 34.5 79 0.0017 26.6 4.5 47 29-85 118-164 (170)
181 KOG3432 Vacuolar H+-ATPase V1 34.2 62 0.0014 25.9 3.7 33 21-55 34-66 (121)
182 PRK11558 putative ssRNA endonu 33.8 79 0.0017 24.7 4.2 51 21-74 26-76 (97)
183 PRK08559 nusG transcription an 33.1 1.4E+02 0.0031 24.8 6.1 33 49-86 36-68 (153)
184 KOG3424 40S ribosomal protein 32.7 1.5E+02 0.0033 24.1 5.7 45 33-78 34-83 (132)
185 KOG4365 Uncharacterized conser 32.6 7.2 0.00016 38.3 -2.1 77 23-100 4-81 (572)
186 PF14893 PNMA: PNMA 31.5 16 0.00034 34.8 0.0 25 20-44 16-40 (331)
187 PRK06737 acetolactate synthase 30.4 2.3E+02 0.0049 21.0 7.3 66 24-92 6-72 (76)
188 PF14401 RLAN: RimK-like ATPgr 30.3 96 0.0021 26.1 4.6 64 18-81 83-147 (153)
189 PF04026 SpoVG: SpoVG; InterP 30.3 91 0.002 23.6 4.0 26 48-73 2-27 (84)
190 PF03439 Spt5-NGN: Early trans 30.2 61 0.0013 24.2 3.0 25 63-87 43-67 (84)
191 TIGR01873 cas_CT1978 CRISPR-as 30.1 52 0.0011 25.2 2.6 50 21-73 24-74 (87)
192 CHL00123 rps6 ribosomal protei 29.4 2.5E+02 0.0054 21.5 6.4 61 22-84 8-82 (97)
193 PF08544 GHMP_kinases_C: GHMP 28.2 2.1E+02 0.0045 20.3 5.7 43 37-84 37-79 (85)
194 PF05189 RTC_insert: RNA 3'-te 27.9 1.1E+02 0.0023 23.6 4.2 46 24-71 12-64 (103)
195 cd04908 ACT_Bt0572_1 N-termina 27.5 2.1E+02 0.0045 19.6 8.4 46 36-85 15-61 (66)
196 COG5353 Uncharacterized protei 27.2 2.8E+02 0.0061 23.5 6.6 55 23-77 88-155 (161)
197 PRK10905 cell division protein 26.9 70 0.0015 30.3 3.4 63 21-88 246-310 (328)
198 cd04880 ACT_AAAH-PDT-like ACT 25.9 2.4E+02 0.0052 19.8 5.7 49 36-85 13-65 (75)
199 COG5638 Uncharacterized conser 25.1 1E+02 0.0023 30.3 4.3 40 16-55 140-184 (622)
200 PF07876 Dabb: Stress responsi 24.9 2.8E+02 0.0061 20.3 7.2 57 25-81 4-71 (97)
201 PF08156 NOP5NT: NOP5NT (NUC12 23.8 50 0.0011 23.8 1.5 19 66-84 46-64 (67)
202 PLN03134 glycine-rich RNA-bind 23.4 1.9E+02 0.0041 23.7 5.1 22 73-95 82-103 (144)
203 PF13046 DUF3906: Protein of u 23.0 81 0.0018 22.7 2.4 33 35-69 31-63 (64)
204 KOG4213 RNA-binding protein La 22.8 2.2E+02 0.0048 24.9 5.4 51 34-84 118-170 (205)
205 PF13193 AMP-binding_C: AMP-bi 22.7 2.7E+02 0.0058 19.4 5.3 45 38-83 1-46 (73)
206 PF00276 Ribosomal_L23: Riboso 21.9 1.3E+02 0.0028 22.9 3.5 32 25-56 22-55 (91)
207 PTZ00191 60S ribosomal protein 21.8 2.1E+02 0.0046 24.0 5.0 56 24-82 83-140 (145)
208 KOG0156 Cytochrome P450 CYP2 s 21.7 1.6E+02 0.0035 29.5 5.1 62 23-93 33-97 (489)
209 PRK13259 regulatory protein Sp 21.2 1.5E+02 0.0033 23.0 3.8 26 48-73 2-27 (94)
210 PF13721 SecD-TM1: SecD export 21.2 2.7E+02 0.0058 21.6 5.2 46 37-90 49-95 (101)
211 PRK11230 glycolate oxidase sub 20.7 2.5E+02 0.0055 28.1 6.3 48 36-84 203-254 (499)
212 PLN02707 Soluble inorganic pyr 20.3 61 0.0013 30.0 1.6 40 37-85 208-248 (267)
213 PF11491 DUF3213: Protein of u 20.1 2.2E+02 0.0047 21.7 4.2 65 25-96 3-72 (88)
No 1
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.92 E-value=1.7e-24 Score=189.76 Aligned_cols=92 Identities=74% Similarity=1.249 Sum_probs=86.4
Q ss_pred CCCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeee
Q 023186 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (286)
Q Consensus 14 ~~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i 93 (286)
...+.|++.+||||++|+|++++|+|+++|++||+|++++|+.||.|+|+|||+||+|+|.|+|++||++.|.+||||+.
T Consensus 4 ~~~~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~a 83 (247)
T KOG0149|consen 4 NNPFGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKA 83 (247)
T ss_pred CCCCCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccc-CCCCC
Q 023186 94 NCNLACL-GVQRS 105 (286)
Q Consensus 94 ~V~~a~~-~~~~~ 105 (286)
+|++|.. .+.|.
T Consensus 84 NcnlA~lg~~pR~ 96 (247)
T KOG0149|consen 84 NCNLASLGGKPRP 96 (247)
T ss_pred ccchhhhcCccCC
Confidence 9999987 44343
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=7.3e-21 Score=159.01 Aligned_cols=83 Identities=37% Similarity=0.695 Sum_probs=77.4
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~ 97 (286)
....++|||+||+++++|++|+++|++||+|++|+|++|+.|+++||||||+|++.++|++||+.++ .+|+|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3457899999999999999999999999999999999999999999999999999999999999986 569999999999
Q ss_pred cccC
Q 023186 98 ACLG 101 (286)
Q Consensus 98 a~~~ 101 (286)
++.+
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 8643
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=5.4e-18 Score=160.40 Aligned_cols=83 Identities=24% Similarity=0.432 Sum_probs=75.3
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCC--eeeEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDG--RRANC 95 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~G--r~i~V 95 (286)
+...++|||+|||++++|++|+++|++||+|++|+|++|+.++++||||||+|+++++|++||+.|+. +|++ ++|+|
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999985 4655 68899
Q ss_pred EEcccC
Q 023186 96 NLACLG 101 (286)
Q Consensus 96 ~~a~~~ 101 (286)
++++..
T Consensus 270 ~~a~~~ 275 (346)
T TIGR01659 270 RLAEEH 275 (346)
T ss_pred EECCcc
Confidence 988654
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=2e-17 Score=156.57 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=78.6
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
.++...++|||+|||++++|++|+++|++||+|++|+|++|+.|+++||||||+|.++++|++||+.|+ .+|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 455678999999999999999999999999999999999999999999999999999999999999997 4599999999
Q ss_pred EEccc
Q 023186 96 NLACL 100 (286)
Q Consensus 96 ~~a~~ 100 (286)
+++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98864
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=4.4e-17 Score=153.14 Aligned_cols=84 Identities=24% Similarity=0.359 Sum_probs=77.4
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~ 97 (286)
+...++|||+|||++++|++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|.+||+.||. .|+||+|+|++
T Consensus 266 ~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 266 DGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999985 59999999999
Q ss_pred cccCC
Q 023186 98 ACLGV 102 (286)
Q Consensus 98 a~~~~ 102 (286)
+..+.
T Consensus 346 ~~~~~ 350 (352)
T TIGR01661 346 KTNKA 350 (352)
T ss_pred ccCCC
Confidence 96543
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=1e-16 Score=150.67 Aligned_cols=81 Identities=30% Similarity=0.443 Sum_probs=76.3
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEcc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a~ 99 (286)
+.++|||+|||.+++|++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++. .|.|++|+|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 468999999999999999999999999999999999999999999999999999999999999975 5999999999986
Q ss_pred cC
Q 023186 100 LG 101 (286)
Q Consensus 100 ~~ 101 (286)
+.
T Consensus 82 ~~ 83 (352)
T TIGR01661 82 PS 83 (352)
T ss_pred cc
Confidence 53
No 7
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=9.5e-17 Score=146.72 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=78.8
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V 95 (286)
....++++|+|.|||+...|-||+.+|++||+|.+|+||.+. .-+|||+||+|++.+||+||-++|+. +|.||+|+|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 345678999999999999999999999999999999999874 46899999999999999999999985 599999999
Q ss_pred EEcccCCCCCC
Q 023186 96 NLACLGVQRSK 106 (286)
Q Consensus 96 ~~a~~~~~~~~ 106 (286)
+.|..+...++
T Consensus 169 n~ATarV~n~K 179 (376)
T KOG0125|consen 169 NNATARVHNKK 179 (376)
T ss_pred eccchhhccCC
Confidence 99987765444
No 8
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.1e-16 Score=139.49 Aligned_cols=84 Identities=27% Similarity=0.379 Sum_probs=78.7
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V~ 96 (286)
+..+..+|-|.||+++++|++|+++|.+||.|.+|.|.+|++||.+||||||+|.++++|.+||+.||.. ++.-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 3446788999999999999999999999999999999999999999999999999999999999999876 999999999
Q ss_pred EcccC
Q 023186 97 LACLG 101 (286)
Q Consensus 97 ~a~~~ 101 (286)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99764
No 9
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.7e-16 Score=127.81 Aligned_cols=80 Identities=21% Similarity=0.335 Sum_probs=75.8
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a 98 (286)
.++++|||+||+..++||+|.++|+++|+|+.|.+-.|+.+...+|||||+|-+.++|+.||+.++. .|+.+.|+|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4689999999999999999999999999999999999999999999999999999999999999975 599999999987
Q ss_pred c
Q 023186 99 C 99 (286)
Q Consensus 99 ~ 99 (286)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 3
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=5.9e-16 Score=111.44 Aligned_cols=69 Identities=36% Similarity=0.664 Sum_probs=64.8
Q ss_pred EEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeE
Q 023186 25 VFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (286)
Q Consensus 25 LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~ 94 (286)
|||+|||+++++++|+++|++||.|..+++..+ .+++++++|||+|.+.++|++|++.++. .|++++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6789999999999999999999999874 59999885
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.63 E-value=8.1e-15 Score=146.29 Aligned_cols=76 Identities=28% Similarity=0.409 Sum_probs=68.5
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhc--CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEE
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQF--GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~f--G~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~ 97 (286)
+.++|||+||+++++||+|+++|++| |+|++|++++ +||||+|+++++|++||+.+| .+|+|++|+|++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 46789999999999999999999999 9999998764 499999999999999999997 569999999999
Q ss_pred cccCCCC
Q 023186 98 ACLGVQR 104 (286)
Q Consensus 98 a~~~~~~ 104 (286)
+++...+
T Consensus 304 Akp~~~~ 310 (578)
T TIGR01648 304 AKPVDKK 310 (578)
T ss_pred ccCCCcc
Confidence 9875443
No 12
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=7.5e-15 Score=138.88 Aligned_cols=80 Identities=30% Similarity=0.421 Sum_probs=73.9
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~ 99 (286)
+.+.|||+||+.++|||.|+++|++||+|++|+.++| ||||+|.++++|.+||+.+| ++|+|..|+|.+|+
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 6799999999999999999999999999999999877 99999999999999999998 56999999999999
Q ss_pred cCCCCCCCC
Q 023186 100 LGVQRSKPS 108 (286)
Q Consensus 100 ~~~~~~~~~ 108 (286)
+..+++..+
T Consensus 330 P~~k~k~~r 338 (506)
T KOG0117|consen 330 PVDKKKKER 338 (506)
T ss_pred Chhhhccch
Confidence 877665543
No 13
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=3.4e-15 Score=135.11 Aligned_cols=95 Identities=27% Similarity=0.442 Sum_probs=83.9
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V 95 (286)
.-+.+.++|||+-|+.+++|.+|++.|++||.|+.|.|+.|+.|+++||||||+|+++.+...|.+...+ .|+|++|.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 3447889999999999999999999999999999999999999999999999999999999999999864 599999999
Q ss_pred EEcccCCCCCCCCCCC
Q 023186 96 NLACLGVQRSKPSTPK 111 (286)
Q Consensus 96 ~~a~~~~~~~~~~~~~ 111 (286)
.+...+..+.....+-
T Consensus 176 DvERgRTvkgW~PRRL 191 (335)
T KOG0113|consen 176 DVERGRTVKGWLPRRL 191 (335)
T ss_pred Eecccccccccccccc
Confidence 9887655555544433
No 14
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=5.8e-15 Score=124.76 Aligned_cols=78 Identities=28% Similarity=0.434 Sum_probs=71.0
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a 98 (286)
.-.++|||+||+.++++.||+.+|.+||.|.+|+|... ..|||||||+|..+|++|+..|+ ..|+|.+|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 45789999999999999999999999999999999775 46899999999999999999997 5699999999999
Q ss_pred ccCC
Q 023186 99 CLGV 102 (286)
Q Consensus 99 ~~~~ 102 (286)
+-..
T Consensus 83 ~G~~ 86 (195)
T KOG0107|consen 83 TGRP 86 (195)
T ss_pred cCCc
Confidence 6543
No 15
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=6.1e-15 Score=107.13 Aligned_cols=69 Identities=32% Similarity=0.592 Sum_probs=63.7
Q ss_pred EEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 25 VFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 25 LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
|||+|||+++++++|+++|+.+|.|.++.+..+++ ++.+++|||+|.+.++|++|++.++ ..|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 8999999999999999999999998 569999885
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.58 E-value=1.1e-14 Score=145.87 Aligned_cols=81 Identities=17% Similarity=0.393 Sum_probs=76.3
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a 98 (286)
...++|||+||++++++++|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+.+|. +|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 4568999999999999999999999999999999999999999999999999999999999999985 599999999988
Q ss_pred cc
Q 023186 99 CL 100 (286)
Q Consensus 99 ~~ 100 (286)
..
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 53
No 17
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=9.7e-15 Score=126.35 Aligned_cols=88 Identities=25% Similarity=0.431 Sum_probs=80.4
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
+.+-+..++|-|-||...++.++|+.+|++||.|-+|.|++|+.|..++|||||.|.+..+|++||+.|. .+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 3345567899999999999999999999999999999999999999999999999999999999999997 569999999
Q ss_pred EEEcccCCC
Q 023186 95 CNLACLGVQ 103 (286)
Q Consensus 95 V~~a~~~~~ 103 (286)
|.+|+-...
T Consensus 87 Vq~arygr~ 95 (256)
T KOG4207|consen 87 VQMARYGRP 95 (256)
T ss_pred ehhhhcCCC
Confidence 999975543
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.57 E-value=1.2e-14 Score=131.06 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=68.8
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a~ 99 (286)
.++|||+||+++++|++|+++|+.||+|++|+|++|+. ++|||||+|+++++|++||...+..|.|+.|+|+++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 57999999999999999999999999999999999864 5789999999999999999744567999999999985
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.56 E-value=9.6e-15 Score=146.21 Aligned_cols=79 Identities=30% Similarity=0.558 Sum_probs=74.6
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a 98 (286)
...++|||+||+++++|++|+++|++||+|++|+|++|+.|+++||||||+|++.++|++||+.+|. .|+||+|+|+..
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4578999999999999999999999999999999999999999999999999999999999999975 599999999854
No 20
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=2.3e-14 Score=122.20 Aligned_cols=78 Identities=22% Similarity=0.372 Sum_probs=69.3
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a 98 (286)
...++|||+|||.++.|.+|+++|.|||.|.+|.|... .....||||+|+|..+|+.||..-+. .++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999988443 34567999999999999999999875 499999999999
Q ss_pred cc
Q 023186 99 CL 100 (286)
Q Consensus 99 ~~ 100 (286)
..
T Consensus 81 rg 82 (241)
T KOG0105|consen 81 RG 82 (241)
T ss_pred cC
Confidence 54
No 21
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.2e-14 Score=130.25 Aligned_cols=84 Identities=37% Similarity=0.523 Sum_probs=77.8
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~ 94 (286)
+.......-|||+.|..+++-|+||+.|.+||+|.+++|++|..|+|+|||+||.|-++++|++||..||.. |.+|.|+
T Consensus 56 k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 56 KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 333445678999999999999999999999999999999999999999999999999999999999999965 9999999
Q ss_pred EEEcc
Q 023186 95 CNLAC 99 (286)
Q Consensus 95 V~~a~ 99 (286)
.+||.
T Consensus 136 TNWAT 140 (321)
T KOG0148|consen 136 TNWAT 140 (321)
T ss_pred ccccc
Confidence 99995
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.55 E-value=2.2e-14 Score=143.55 Aligned_cols=76 Identities=28% Similarity=0.475 Sum_probs=72.8
Q ss_pred EEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEEEEcc
Q 023186 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLAC 99 (286)
Q Consensus 24 ~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V~~a~ 99 (286)
+|||+|||.++||++|+++|++||+|++|+|++|+.|++++|||||+|.+.++|++||+.++.. |.|+.|+|.++.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 7999999999999999999999999999999999999999999999999999999999999854 999999998874
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.53 E-value=2.5e-14 Score=143.11 Aligned_cols=83 Identities=29% Similarity=0.470 Sum_probs=76.4
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~ 97 (286)
....++|||+||++++++++|+++|++||+|++|+|+.| .++++||||||+|.+.++|++||++++ .+|+|++|+|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 446788999999999999999999999999999999999 679999999999999999999999997 569999999999
Q ss_pred cccCC
Q 023186 98 ACLGV 102 (286)
Q Consensus 98 a~~~~ 102 (286)
+..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 96543
No 24
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.4e-15 Score=128.18 Aligned_cols=88 Identities=28% Similarity=0.422 Sum_probs=81.3
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
...+-++|||++|..+++|..|...|-.||+|++|.++.|-+++++|||+||+|+..|+|..||..|| .+|.||.|+|+
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999998 57999999999
Q ss_pred EcccCCCCC
Q 023186 97 LACLGVQRS 105 (286)
Q Consensus 97 ~a~~~~~~~ 105 (286)
+|++.+.+.
T Consensus 86 ~AkP~kike 94 (298)
T KOG0111|consen 86 LAKPEKIKE 94 (298)
T ss_pred ecCCccccC
Confidence 998765443
No 25
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.2e-13 Score=123.71 Aligned_cols=77 Identities=35% Similarity=0.558 Sum_probs=71.2
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~ 97 (286)
..+.++|||+||+.-++|++||++|+.||.|.+|+|.+| +||+||.|++.|+|.+||..+| .+|.|..++|.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 456899999999999999999999999999999999998 5799999999999999999997 579999999999
Q ss_pred cccC
Q 023186 98 ACLG 101 (286)
Q Consensus 98 a~~~ 101 (286)
-+..
T Consensus 235 GKe~ 238 (321)
T KOG0148|consen 235 GKEG 238 (321)
T ss_pred cccC
Confidence 8643
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.52 E-value=1e-13 Score=136.62 Aligned_cols=82 Identities=24% Similarity=0.504 Sum_probs=76.6
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a 98 (286)
...++|||+|||+.+++++|+++|++||.|+.+.|++++.+++++|||||+|.+.++|++||+.|+. .|.+++|+|+++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999999999999999999999999999999999999975 599999999998
Q ss_pred ccC
Q 023186 99 CLG 101 (286)
Q Consensus 99 ~~~ 101 (286)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 654
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.51 E-value=7.9e-14 Score=135.82 Aligned_cols=82 Identities=24% Similarity=0.399 Sum_probs=75.7
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEc
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a 98 (286)
+...++|||+|||.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||...+..|.|+.|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 34578999999999999999999999999999999999999999999999999999999999986567799999999877
Q ss_pred cc
Q 023186 99 CL 100 (286)
Q Consensus 99 ~~ 100 (286)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 53
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.50 E-value=6.8e-14 Score=139.72 Aligned_cols=76 Identities=30% Similarity=0.434 Sum_probs=67.8
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-cc-CCeeeEEE
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI-DGRRANCN 96 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i-~Gr~i~V~ 96 (286)
...++|||+|||++++|++|+++|++||.|.+|+|++| .++++||||||+|.+.++|++||+.|+. +| .++.|.|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 45699999999999999999999999999999999999 7899999999999999999999999973 45 46655443
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.49 E-value=1.5e-13 Score=133.91 Aligned_cols=78 Identities=32% Similarity=0.598 Sum_probs=74.9
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEcc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a~ 99 (286)
.++|||+||+.+++|++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.|+. .|.|+.|+|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 68999999999999999999999999999999999999999999999999999999999999975 5999999999986
No 30
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=2.1e-13 Score=96.74 Aligned_cols=71 Identities=32% Similarity=0.558 Sum_probs=65.5
Q ss_pred EEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 24 ~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
+|||+|||.++++++|+++|++||.|.++++..++ +.++++|||+|.+.++|++|++.++ ..+.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 7788999999999999999999997 56999998873
No 31
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=1.8e-13 Score=96.65 Aligned_cols=70 Identities=36% Similarity=0.589 Sum_probs=65.3
Q ss_pred EcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 27 VGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 27 VgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
|+|||+++++++|+++|++||.|.++.+..++.+++++++|||+|.+.++|++|++.++ ..+++++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999998889999999999999999999999997 56999998874
No 32
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.48 E-value=1.7e-13 Score=120.24 Aligned_cols=78 Identities=29% Similarity=0.596 Sum_probs=75.1
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~ 99 (286)
.++|||+||++++++++|+++|.+||.|..+.+..|+.+++++|||||+|.+.+++.+||+.++ ..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999999999999999999999999999999998 56999999999975
No 33
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=1.3e-13 Score=132.01 Aligned_cols=78 Identities=18% Similarity=0.315 Sum_probs=70.7
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCH--HHHHHHHHhcCC-ccCCeeeEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP--EAAMKACVDAAP-VIDGRRANC 95 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~--e~A~~Ai~~l~~-~i~Gr~i~V 95 (286)
.....+||||||++++++++|+.+|+.||.|.+|.|+ +.|| ||||||+|.+. +++.+||+.||. ++.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 4456899999999999999999999999999999999 4466 99999999977 789999999985 599999999
Q ss_pred EEccc
Q 023186 96 NLACL 100 (286)
Q Consensus 96 ~~a~~ 100 (286)
+.|++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 99974
No 34
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=8.4e-14 Score=131.38 Aligned_cols=86 Identities=27% Similarity=0.406 Sum_probs=75.1
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC--CccCC--ee
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA--PVIDG--RR 92 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~--~~i~G--r~ 92 (286)
..|.+.-||||+-||+.++|+|||++|++||.|.+|.|++||.|+.+||||||+|.++++|.+|+..++ ++|-| ..
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 355677899999999999999999999999999999999999999999999999999999999999994 34766 45
Q ss_pred eEEEEcccCC
Q 023186 93 ANCNLACLGV 102 (286)
Q Consensus 93 i~V~~a~~~~ 102 (286)
|.|+.|..+.
T Consensus 109 vqvk~Ad~E~ 118 (510)
T KOG0144|consen 109 VQVKYADGER 118 (510)
T ss_pred eeecccchhh
Confidence 6666665433
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.46 E-value=1e-13 Score=117.96 Aligned_cols=82 Identities=28% Similarity=0.393 Sum_probs=77.8
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V~ 96 (286)
+.....+|||+||++.++|+.|.|+|-+.|.|.++.|++|+.+...+|||||+|.++|+|+-||+.+|.+ |-||+|+|+
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 4567889999999999999999999999999999999999999999999999999999999999999954 999999999
Q ss_pred Ecc
Q 023186 97 LAC 99 (286)
Q Consensus 97 ~a~ 99 (286)
++.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 996
No 36
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=3.2e-13 Score=120.31 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=68.6
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a~ 99 (286)
...+|||+||++++||++|+++|+.||+|++|+|++|. +.++||||+|+++++++.||...+..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999984 45679999999999999999666678999999998764
No 37
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.44 E-value=2e-13 Score=131.95 Aligned_cols=83 Identities=29% Similarity=0.542 Sum_probs=78.4
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcccC
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACLG 101 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~~~ 101 (286)
+.|||+|||.+++||+|.++|++.|.|.+++++.|++||++|||+|++|.+.+++++|++.|| .++.||+|+|+++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999998 5699999999999766
Q ss_pred CCCC
Q 023186 102 VQRS 105 (286)
Q Consensus 102 ~~~~ 105 (286)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5543
No 38
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=3.5e-13 Score=120.28 Aligned_cols=85 Identities=27% Similarity=0.434 Sum_probs=79.5
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V~~ 97 (286)
++..++|.|.-||.++|+||||.+|...|+|++|++++||.+|.+-||+||.|.+++||++||..+|.. |..+.|+|+.
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 556788999999999999999999999999999999999999999999999999999999999999865 9999999999
Q ss_pred cccCCC
Q 023186 98 ACLGVQ 103 (286)
Q Consensus 98 a~~~~~ 103 (286)
|++..+
T Consensus 118 ARPSs~ 123 (360)
T KOG0145|consen 118 ARPSSD 123 (360)
T ss_pred ccCChh
Confidence 986554
No 39
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=1e-13 Score=130.73 Aligned_cols=87 Identities=24% Similarity=0.395 Sum_probs=76.6
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC--ccCC--eeeEE
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP--VIDG--RRANC 95 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~--~i~G--r~i~V 95 (286)
...+||||+-|+..++|+||+++|++||.|++|.|++|.+ +.+|||+||+|.++|.|..||+.+|+ .+.| ..|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 3478999999999999999999999999999999999975 99999999999999999999999984 3665 57899
Q ss_pred EEcccCCCCCCC
Q 023186 96 NLACLGVQRSKP 107 (286)
Q Consensus 96 ~~a~~~~~~~~~ 107 (286)
++|...++|..+
T Consensus 201 kFADtqkdk~~~ 212 (510)
T KOG0144|consen 201 KFADTQKDKDGK 212 (510)
T ss_pred EecccCCCchHH
Confidence 999776655443
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.42 E-value=1.5e-13 Score=127.62 Aligned_cols=86 Identities=41% Similarity=0.748 Sum_probs=80.5
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEccc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a~~ 100 (286)
+.++|||++|+|+++||.|++.|++||+|.+|++++|+.+++++||+||+|++.+.+.++|....+.|+++.|+++.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 78999999999999999999999999999999999999999999999999999999999999989999999999999977
Q ss_pred CCCCCC
Q 023186 101 GVQRSK 106 (286)
Q Consensus 101 ~~~~~~ 106 (286)
+....+
T Consensus 85 r~~~~~ 90 (311)
T KOG4205|consen 85 REDQTK 90 (311)
T ss_pred cccccc
Confidence 654433
No 41
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=5.3e-13 Score=126.50 Aligned_cols=79 Identities=28% Similarity=0.458 Sum_probs=72.7
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-Ccc-CCeeeEEEE
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI-DGRRANCNL 97 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i-~Gr~i~V~~ 97 (286)
...+.|||+.||.++.|++|..+|++.|+|-+++|+.|+.+|.+||||||+|.+.++|++||+.+| .+| .||.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 567899999999999999999999999999999999999999999999999999999999999996 554 588887765
Q ss_pred c
Q 023186 98 A 98 (286)
Q Consensus 98 a 98 (286)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 4
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=1.9e-12 Score=92.21 Aligned_cols=73 Identities=32% Similarity=0.571 Sum_probs=67.0
Q ss_pred EEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEEEE
Q 023186 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNL 97 (286)
Q Consensus 24 ~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V~~ 97 (286)
+|+|+|||..+++++|+++|+++|.|..+.+..++.+ +.+++|||+|.+.++|..|++.++.. +++++|.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988765 77899999999999999999999865 9999998863
No 43
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=3.8e-14 Score=120.50 Aligned_cols=80 Identities=28% Similarity=0.554 Sum_probs=74.7
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V~~a 98 (286)
.+..-|||+|||.+.||.+|..+|++||+|.+|.+++|+.||+++||||+.|+|..+-.-|+..+|.+ |.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45678999999999999999999999999999999999999999999999999999999999999876 99999999865
Q ss_pred c
Q 023186 99 C 99 (286)
Q Consensus 99 ~ 99 (286)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 3
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.38 E-value=6.2e-13 Score=120.27 Aligned_cols=71 Identities=28% Similarity=0.532 Sum_probs=67.0
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEcccC
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLACLG 101 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a~~~ 101 (286)
.+|||+|||.++++.+|+.+|++||+|++|+|+++ |+||+.+|...++.||+.|++ .|+|..|+|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 58999999999999999999999999999999976 999999999999999999986 499999999998765
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.38 E-value=3.3e-12 Score=125.99 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=70.6
Q ss_pred CCCccEEEEcCCCc-cCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEE
Q 023186 19 DTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (286)
Q Consensus 19 d~~~~~LfVgnLp~-~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~ 96 (286)
....++|||+||++ ++++++|+++|++||+|.+|+|++++ +|||||+|.+.++|++||+.|+. .|.|++|+|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45678999999998 69999999999999999999999873 68999999999999999999975 5999999999
Q ss_pred EcccC
Q 023186 97 LACLG 101 (286)
Q Consensus 97 ~a~~~ 101 (286)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98643
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.36 E-value=3.6e-12 Score=125.75 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=67.3
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc--C-CccCCeeeEEEE
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA--A-PVIDGRRANCNL 97 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l--~-~~i~Gr~i~V~~ 97 (286)
+++.|||+|||++++|++|+++|++||.|++|+|+++ |+||||+|++.++|++||+.+ + ..|+|+.|+|++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999864 579999999999999999975 4 459999999999
Q ss_pred cccC
Q 023186 98 ACLG 101 (286)
Q Consensus 98 a~~~ 101 (286)
+..+
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8643
No 47
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.3e-12 Score=124.67 Aligned_cols=84 Identities=36% Similarity=0.530 Sum_probs=76.4
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc----C-C--ccCCe
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA----A-P--VIDGR 91 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l----~-~--~i~Gr 91 (286)
+...++|||+|||++++|++|.++|++||+|..+.|+.++.|++++|.|||.|.+.+++.+||+.. . . .|+||
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 345689999999999999999999999999999999999999999999999999999999999987 2 2 48999
Q ss_pred eeEEEEcccCC
Q 023186 92 RANCNLACLGV 102 (286)
Q Consensus 92 ~i~V~~a~~~~ 102 (286)
.|+|.++-.+.
T Consensus 369 ~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 369 LLKVTLAVTRK 379 (678)
T ss_pred EEeeeeccchH
Confidence 99999986543
No 48
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.35 E-value=3.2e-12 Score=104.18 Aligned_cols=86 Identities=22% Similarity=0.315 Sum_probs=79.5
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
+......-.|||.++.++.+|++|.+.|..||+|+.+.+..|+.||-.|||++|+|++.+.|++||..+| ..|.+..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 4455567789999999999999999999999999999999999999999999999999999999999999 469999999
Q ss_pred EEEcccC
Q 023186 95 CNLACLG 101 (286)
Q Consensus 95 V~~a~~~ 101 (286)
|.|+..+
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 9999654
No 49
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.35 E-value=8.9e-12 Score=119.97 Aligned_cols=86 Identities=26% Similarity=0.393 Sum_probs=73.2
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a~ 99 (286)
.....|||+|||.++++++|+++|.+||.|++..|......++..+|+||+|++.++++.||++....|++++|.|+.++
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 34566999999999999999999999999999887665434555599999999999999999998666999999999997
Q ss_pred cCCCCC
Q 023186 100 LGVQRS 105 (286)
Q Consensus 100 ~~~~~~ 105 (286)
......
T Consensus 366 ~~~~g~ 371 (419)
T KOG0116|consen 366 PGFRGN 371 (419)
T ss_pred cccccc
Confidence 655443
No 50
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.32 E-value=8.2e-12 Score=118.24 Aligned_cols=80 Identities=20% Similarity=0.392 Sum_probs=73.5
Q ss_pred CCccEEEEcCCCccCCHHHHHHHH-HhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEE
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F-~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~ 97 (286)
...+.+||.|||.++.+.+||++| ++-|+|+.|.++.|. ++|+|||+.|||+++|.++||++.||+ ++.||.|.|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 346679999999999999999999 789999999999995 699999999999999999999999984 69999999988
Q ss_pred ccc
Q 023186 98 ACL 100 (286)
Q Consensus 98 a~~ 100 (286)
...
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 754
No 51
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=1.1e-11 Score=90.76 Aligned_cols=61 Identities=30% Similarity=0.506 Sum_probs=54.3
Q ss_pred HHHHHHHHH----hcCCEEEEE-EeecCCC--CCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 36 KETMEKYFE----QFGEILEAV-VITDKAT--GRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 36 ee~L~~~F~----~fG~I~~v~-i~~dk~t--g~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
+++|+++|+ +||.|.+|. |+.++.+ ++++||+||+|.+.++|++||+.|+ ..++|+.|+|+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678888888 999999995 7778777 9999999999999999999999997 46999999873
No 52
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.29 E-value=4.4e-12 Score=117.98 Aligned_cols=87 Identities=32% Similarity=0.586 Sum_probs=80.6
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEccc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a~~ 100 (286)
..++|||++|+.+++|++|++.|++||.|..+.++.|+.+.+++||+||+|++++++++++...-++|+++.++|+.|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 46799999999999999999999999999999999999999999999999999999999999988999999999999987
Q ss_pred CCCCCCC
Q 023186 101 GVQRSKP 107 (286)
Q Consensus 101 ~~~~~~~ 107 (286)
+......
T Consensus 176 k~~~~~~ 182 (311)
T KOG4205|consen 176 KEVMQST 182 (311)
T ss_pred hhhcccc
Confidence 6655443
No 53
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=4.1e-12 Score=113.93 Aligned_cols=86 Identities=28% Similarity=0.353 Sum_probs=80.5
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V 95 (286)
.+..+.|+|||-.||.+..+.||..+|-.||.|.+.+|..|+.|..+|+|+||.|++..++..||..+|.. |.-+||+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 45667899999999999999999999999999999999999999999999999999999999999999976 99999999
Q ss_pred EEcccCC
Q 023186 96 NLACLGV 102 (286)
Q Consensus 96 ~~a~~~~ 102 (286)
.+++++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 9986654
No 54
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.26 E-value=7e-12 Score=113.52 Aligned_cols=83 Identities=23% Similarity=0.443 Sum_probs=74.6
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
+...+..+||+|+||.+.++.+||++.|++||.|.+|+|++| |+||+|+-.++|..||+.|+ .+|+|++++
T Consensus 72 ksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 72 KSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred cccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceee
Confidence 344678899999999999999999999999999999999887 99999999999999999996 679999999
Q ss_pred EEEcccCCCCCC
Q 023186 95 CNLACLGVQRSK 106 (286)
Q Consensus 95 V~~a~~~~~~~~ 106 (286)
|.++..+.+...
T Consensus 144 vq~stsrlrtap 155 (346)
T KOG0109|consen 144 VQLSTSRLRTAP 155 (346)
T ss_pred eeeeccccccCC
Confidence 999977665443
No 55
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=3.3e-11 Score=94.15 Aligned_cols=80 Identities=20% Similarity=0.318 Sum_probs=70.1
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V 95 (286)
...+-.+-|||.|||.++|.|++.++|.+||.|..|+|-.+++ .+|-|||.|+|..+|++||+.|... ++++-|.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 3455678899999999999999999999999999999976654 6899999999999999999999765 99999988
Q ss_pred EEcc
Q 023186 96 NLAC 99 (286)
Q Consensus 96 ~~a~ 99 (286)
-.-.
T Consensus 90 lyyq 93 (124)
T KOG0114|consen 90 LYYQ 93 (124)
T ss_pred EecC
Confidence 6643
No 56
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.23 E-value=4.6e-11 Score=83.37 Aligned_cols=55 Identities=31% Similarity=0.527 Sum_probs=48.8
Q ss_pred HHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEc
Q 023186 39 MEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (286)
Q Consensus 39 L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a 98 (286)
|+++|++||+|+++.+..++ ++++||+|.+.++|++|++.++. .++|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999997664 58999999999999999999985 599999999985
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=2.7e-11 Score=117.38 Aligned_cols=79 Identities=28% Similarity=0.455 Sum_probs=72.2
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEccc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACL 100 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~~ 100 (286)
--+|.|+||||.|.+++|+.+|++||.|.+|.|++.++ ++-+|||||.|.+..+|.+||+.+| ++|+||.|-|.||-.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 56899999999999999999999999999999997765 5666999999999999999999998 569999999999864
Q ss_pred C
Q 023186 101 G 101 (286)
Q Consensus 101 ~ 101 (286)
.
T Consensus 196 K 196 (678)
T KOG0127|consen 196 K 196 (678)
T ss_pred c
Confidence 3
No 58
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.7e-11 Score=113.53 Aligned_cols=81 Identities=31% Similarity=0.471 Sum_probs=75.7
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a 98 (286)
.+...|||..|.+-+++|+|+-+|++||.|.+|.|++|+.||.+-.||||+|++.+++++|.-+|. ..|+.++|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 457899999999999999999999999999999999999999999999999999999999999995 5599999999887
Q ss_pred cc
Q 023186 99 CL 100 (286)
Q Consensus 99 ~~ 100 (286)
..
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 53
No 59
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=4.4e-11 Score=110.56 Aligned_cols=81 Identities=32% Similarity=0.448 Sum_probs=73.7
Q ss_pred CCCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc-CC-ccCCe
Q 023186 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA-AP-VIDGR 91 (286)
Q Consensus 14 ~~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l-~~-~i~Gr 91 (286)
..+.+|+..++|||++|-..++|.+|+++|.+||+|++++++.. +++|||+|.++++|++|.++. +. +|+|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 56778999999999999999999999999999999999999876 459999999999999999988 53 59999
Q ss_pred eeEEEEccc
Q 023186 92 RANCNLACL 100 (286)
Q Consensus 92 ~i~V~~a~~ 100 (286)
+|+|.|.++
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999865
No 60
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=1.1e-11 Score=115.16 Aligned_cols=78 Identities=31% Similarity=0.550 Sum_probs=73.8
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEEEEc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLA 98 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V~~a 98 (286)
-.|+|||+.|.+++.|+.||..|..||.|++|.+.+|+.|+++|||+||+|+-.|.|.-|++.+|.. +.||.|+|..-
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999965 99999999754
No 61
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.3e-10 Score=104.04 Aligned_cols=85 Identities=24% Similarity=0.304 Sum_probs=78.4
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~ 94 (286)
+..+.....|||-||..+++|..|.++|..||.|..|+|++|..|.+.|||+||++.+-++|..||..||.. +.+|.|.
T Consensus 272 p~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQ 351 (360)
T KOG0145|consen 272 PGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 351 (360)
T ss_pred CCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEE
Confidence 345556789999999999999999999999999999999999999999999999999999999999999965 9999999
Q ss_pred EEEccc
Q 023186 95 CNLACL 100 (286)
Q Consensus 95 V~~a~~ 100 (286)
|+++..
T Consensus 352 VsFKtn 357 (360)
T KOG0145|consen 352 VSFKTN 357 (360)
T ss_pred EEEecC
Confidence 998753
No 62
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=8.4e-11 Score=112.33 Aligned_cols=82 Identities=33% Similarity=0.526 Sum_probs=72.9
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEEEEcccC
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLACLG 101 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V~~a~~~ 101 (286)
..|||.||+++++.++|.++|+.||+|++|+|.+|.+ | +||| ||+|+++++|++||+.+|.+ +.+++|.|.+...+
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 3399999999999999999999999999999999975 4 9999 99999999999999999865 89999999888665
Q ss_pred CCCCCC
Q 023186 102 VQRSKP 107 (286)
Q Consensus 102 ~~~~~~ 107 (286)
..+.++
T Consensus 154 ~er~~~ 159 (369)
T KOG0123|consen 154 EEREAP 159 (369)
T ss_pred hhhccc
Confidence 554433
No 63
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.16 E-value=6.9e-11 Score=100.78 Aligned_cols=80 Identities=25% Similarity=0.401 Sum_probs=73.3
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEcc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v-~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a~ 99 (286)
..+|||+||.++++|..|.++|+.||.|... +|++|.+|+.+++|+||.|++.|.+.+||+.+|. .++.++|.|+.+.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 4799999999999999999999999988664 8899999999999999999999999999999985 5999999999996
Q ss_pred cC
Q 023186 100 LG 101 (286)
Q Consensus 100 ~~ 101 (286)
.+
T Consensus 176 k~ 177 (203)
T KOG0131|consen 176 KK 177 (203)
T ss_pred ec
Confidence 43
No 64
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.15 E-value=4.1e-11 Score=116.23 Aligned_cols=81 Identities=32% Similarity=0.554 Sum_probs=74.6
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEccc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLACL 100 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a~~ 100 (286)
..+|||+||-++++|++|+.+|+.||.|+.|.+++|.+||++|||+||+|.+.++|++|++.+|. +|-|+.|+|.....
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 34499999999999999999999999999999999999999999999999999999999999985 59999999987654
Q ss_pred CC
Q 023186 101 GV 102 (286)
Q Consensus 101 ~~ 102 (286)
+.
T Consensus 358 r~ 359 (549)
T KOG0147|consen 358 RV 359 (549)
T ss_pred ec
Confidence 43
No 65
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=1.9e-10 Score=103.32 Aligned_cols=83 Identities=28% Similarity=0.408 Sum_probs=73.0
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC--ccCC--eeeEEE
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP--VIDG--RRANCN 96 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~--~i~G--r~i~V~ 96 (286)
+++||||+-|.+.-+|||++++|..||+|++|.+.+..+ +.+|||+||.|.+..+|..||..|+. .+-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 689999999999999999999999999999999998875 89999999999999999999999963 3554 568888
Q ss_pred EcccCCCC
Q 023186 97 LACLGVQR 104 (286)
Q Consensus 97 ~a~~~~~~ 104 (286)
++..+++|
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 88655444
No 66
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.04 E-value=6.9e-10 Score=109.52 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=60.1
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcC------------CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFG------------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG------------~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
..+...++|||+|||+++++++|+++|+++. .|..+.+ .+.+|||||+|.+.++|.+||+ |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-C
Confidence 4556789999999999999999999998752 2333333 4467899999999999999995 6
Q ss_pred C-CccCCeeeEEEEc
Q 023186 85 A-PVIDGRRANCNLA 98 (286)
Q Consensus 85 ~-~~i~Gr~i~V~~a 98 (286)
+ .+|.|+.|+|...
T Consensus 243 ~g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 243 DSIIYSNVFLKIRRP 257 (509)
T ss_pred CCeEeeCceeEecCc
Confidence 6 4599999988644
No 67
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.01 E-value=1.6e-09 Score=105.73 Aligned_cols=81 Identities=25% Similarity=0.402 Sum_probs=75.4
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a 98 (286)
...++|||.+|...+...+|+.+|++||+|+-++|+++..+.-.++|+||++.+.++|.+||+.|+ .+|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 346899999999999999999999999999999999998888889999999999999999999997 5699999999998
Q ss_pred cc
Q 023186 99 CL 100 (286)
Q Consensus 99 ~~ 100 (286)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 74
No 68
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.99 E-value=8.4e-10 Score=110.73 Aligned_cols=72 Identities=22% Similarity=0.428 Sum_probs=67.1
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~ 99 (286)
+++|||+.|+.+++|.+|+.+|+.||+|.+|.++.. ++||||++..+.+|++||.+|+ ..+..+.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 689999999999999999999999999999998765 6799999999999999999996 45999999999985
No 69
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.99 E-value=1.8e-09 Score=93.76 Aligned_cols=86 Identities=24% Similarity=0.337 Sum_probs=76.5
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhc-CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeee
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRA 93 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~f-G~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i 93 (286)
..+.....-++|..||.-+.|.+|..+|.+| |.|+.+++-+++.||.+||||||+|++.|.|+-|-+.||.. |.++.|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3455667789999999999999999999888 78888888899999999999999999999999999999865 889999
Q ss_pred EEEEcccC
Q 023186 94 NCNLACLG 101 (286)
Q Consensus 94 ~V~~a~~~ 101 (286)
.|.+..+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99887654
No 70
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.97 E-value=4.1e-10 Score=100.48 Aligned_cols=83 Identities=31% Similarity=0.530 Sum_probs=76.5
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~ 96 (286)
.++.+.+||++.|..+++++.|-+.|.+|-.....++++|+.|+++|||+||.|.|.+++.+|+++++. .++.|.|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 467789999999999999999999999999999999999999999999999999999999999999985 4899998887
Q ss_pred Eccc
Q 023186 97 LACL 100 (286)
Q Consensus 97 ~a~~ 100 (286)
....
T Consensus 266 kS~w 269 (290)
T KOG0226|consen 266 KSEW 269 (290)
T ss_pred hhhH
Confidence 6644
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=1e-09 Score=102.26 Aligned_cols=81 Identities=17% Similarity=0.410 Sum_probs=75.5
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V~~ 97 (286)
....++|||..+..+.+|+||+.+|+.||+|+.|.+.+++.++.+|||+|++|.+..+..+||..+|-. |.|.-|+|-.
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 356789999999999999999999999999999999999999999999999999999999999999954 9999999977
Q ss_pred cc
Q 023186 98 AC 99 (286)
Q Consensus 98 a~ 99 (286)
+.
T Consensus 287 ~v 288 (544)
T KOG0124|consen 287 CV 288 (544)
T ss_pred cc
Confidence 63
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.95 E-value=3.3e-09 Score=95.49 Aligned_cols=85 Identities=29% Similarity=0.422 Sum_probs=76.3
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V~ 96 (286)
.++..++|+|.||+..|++++|+++|+.|++++.+.|..|+ +|++.|.|-|.|...++|++||+.++.+ |+|+.|+++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 55667899999999999999999999999999999998886 6999999999999999999999999866 999999998
Q ss_pred EcccCCC
Q 023186 97 LACLGVQ 103 (286)
Q Consensus 97 ~a~~~~~ 103 (286)
+......
T Consensus 158 ~i~~~~~ 164 (243)
T KOG0533|consen 158 IISSPSQ 164 (243)
T ss_pred EecCccc
Confidence 8754433
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.93 E-value=1.9e-09 Score=102.41 Aligned_cols=74 Identities=26% Similarity=0.484 Sum_probs=66.9
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~ 97 (286)
..+.|+|||+|||.++|+..||+.|..||.|+.++|+. .+++|| .|.|.++++|++||..++. .|+||.|+|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 45788999999999999999999999999999999843 477887 8999999999999999985 59999999975
No 74
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.92 E-value=4.3e-09 Score=92.60 Aligned_cols=80 Identities=25% Similarity=0.404 Sum_probs=70.8
Q ss_pred CCccEEEEcCCCccCCHHHHHH----HHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeE
Q 023186 20 TTYTKVFVGGLAWETQKETMEK----YFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRAN 94 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~----~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~ 94 (286)
.+..+|||.||++.+..++|++ +|++||+|.+|...+ |.+.||=|||.|.+.+.|-.|++.|+.. +-|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4455999999999999999988 999999999988764 4678999999999999999999999765 8999999
Q ss_pred EEEcccCC
Q 023186 95 CNLACLGV 102 (286)
Q Consensus 95 V~~a~~~~ 102 (286)
|..|+...
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99987544
No 75
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=1.4e-09 Score=108.41 Aligned_cols=84 Identities=26% Similarity=0.417 Sum_probs=76.0
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~ 96 (286)
.+.+.++|.|.|||+..+..+++++|..||.|.+|+|+.....+.++|||||+|-+.++|.+|++.|.. .|-||+|.++
T Consensus 609 ~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 609 KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLE 688 (725)
T ss_pred cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhee
Confidence 344578999999999999999999999999999999998766788899999999999999999999974 4999999999
Q ss_pred EcccC
Q 023186 97 LACLG 101 (286)
Q Consensus 97 ~a~~~ 101 (286)
||+..
T Consensus 689 wA~~d 693 (725)
T KOG0110|consen 689 WAKSD 693 (725)
T ss_pred hhccc
Confidence 99754
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=5.5e-09 Score=104.20 Aligned_cols=79 Identities=33% Similarity=0.536 Sum_probs=69.8
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATG---RSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg---~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
+.++|||.||+++++.++|+.+|++.|.|+++.|.+.++.. .+.||+||+|.+.++|++|++.|+ .+|+|+.|.|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 34459999999999999999999999999999888765432 245999999999999999999998 67999999999
Q ss_pred Ecc
Q 023186 97 LAC 99 (286)
Q Consensus 97 ~a~ 99 (286)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 986
No 77
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.82 E-value=2.4e-08 Score=87.94 Aligned_cols=87 Identities=23% Similarity=0.312 Sum_probs=69.4
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cC---CeeeE
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVI-TDKATGRSKGYGFVTFREPEAAMKACVDAAPV-ID---GRRAN 94 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~-~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~---Gr~i~ 94 (286)
...++|||.+||.++.-.||..+|..|-.-+.+.|. +++.....+-++||+|.+..+|++|++.||.+ || +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 458999999999999999999999988766665543 33433445689999999999999999999865 55 67899
Q ss_pred EEEcccCCCCCC
Q 023186 95 CNLACLGVQRSK 106 (286)
Q Consensus 95 V~~a~~~~~~~~ 106 (286)
|++|+...++++
T Consensus 112 iElAKSNtK~kr 123 (284)
T KOG1457|consen 112 IELAKSNTKRKR 123 (284)
T ss_pred eeehhcCccccc
Confidence 999976554443
No 78
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.79 E-value=1.1e-08 Score=91.96 Aligned_cols=84 Identities=25% Similarity=0.334 Sum_probs=77.8
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
..+.+.+.+||+|+...++.++++.+|+.||.|..+.|..|+.++.+|+|+||+|.+.+.+++|+. ++ ..|.++.|+|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 567789999999999999999999999999999999999999999999999999999999999999 65 6699999999
Q ss_pred EEcccC
Q 023186 96 NLACLG 101 (286)
Q Consensus 96 ~~a~~~ 101 (286)
.+.+..
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 988654
No 79
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.6e-08 Score=96.72 Aligned_cols=71 Identities=25% Similarity=0.398 Sum_probs=66.5
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEcc
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a~ 99 (286)
..|||+ +++||+.|.++|+..|+|.+++|.+|. | +-|||||.|.+.++|++||+.+|. .|.|+.|+|-|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc
Confidence 468999 899999999999999999999999998 7 999999999999999999999995 5999999998874
No 80
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.71 E-value=5.1e-08 Score=93.97 Aligned_cols=79 Identities=23% Similarity=0.342 Sum_probs=68.0
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~ 97 (286)
+-.+..-|-+.+|||++|++||++||+-++ |+++++.+ .+||..|-|||+|.++|++++||++....+..|-|+|-.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 345677888999999999999999999984 77765554 479999999999999999999999987778889999977
Q ss_pred cc
Q 023186 98 AC 99 (286)
Q Consensus 98 a~ 99 (286)
+.
T Consensus 83 ~~ 84 (510)
T KOG4211|consen 83 AG 84 (510)
T ss_pred cC
Confidence 73
No 81
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.67 E-value=7.4e-09 Score=90.80 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=69.1
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V~~a 98 (286)
+.+++|||.||...++||.|.|+|-+-|.|.+|.|..+++ ++.| |+||+|+++.++.-|++.+|.+ +.++.|.|.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3468899999999999999999999999999999998876 5556 9999999999999999999865 88888887765
Q ss_pred c
Q 023186 99 C 99 (286)
Q Consensus 99 ~ 99 (286)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 4
No 82
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.57 E-value=4.8e-08 Score=95.36 Aligned_cols=72 Identities=26% Similarity=0.339 Sum_probs=64.3
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
.+....+|+|-|||.+|++++|+++|+.||+|++|+. |-.+++.+||+|-|..+|++|+++++ .+|.+++|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4677899999999999999999999999999999654 34467899999999999999999998 469999887
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.56 E-value=5e-08 Score=86.27 Aligned_cols=69 Identities=29% Similarity=0.601 Sum_probs=62.0
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcc
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~ 99 (286)
.+|||++|++.+.+++|+++|..||.|.+|.+. .+|+||+|+|..+|..||..++ .+|.+.++.|++++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 479999999999999999999999999999874 4599999999999999999997 56888888888874
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.55 E-value=3.2e-07 Score=85.26 Aligned_cols=83 Identities=18% Similarity=0.282 Sum_probs=73.2
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-cc
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI 88 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~--------v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i 88 (286)
+....+.|||.|||.++|-+++.++|+++|-|.+ |+|-++.. |+.||=+.+.|..+++++-||+.|+. .|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 4556778999999999999999999999998863 67777765 99999999999999999999999974 59
Q ss_pred CCeeeEEEEcccC
Q 023186 89 DGRRANCNLACLG 101 (286)
Q Consensus 89 ~Gr~i~V~~a~~~ 101 (286)
.|+.|+|+.|+-.
T Consensus 209 rg~~~rVerAkfq 221 (382)
T KOG1548|consen 209 RGKKLRVERAKFQ 221 (382)
T ss_pred cCcEEEEehhhhh
Confidence 9999999999744
No 85
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.44 E-value=3.1e-07 Score=91.89 Aligned_cols=83 Identities=19% Similarity=0.334 Sum_probs=73.3
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecC---CCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeee
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK---ATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk---~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i 93 (286)
+|...++|||+||+..++|+.|...|.+||.|..|+|+..+ +..+.+-|+||.|-++.+|++|++.|+. ++....+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 35678999999999999999999999999999999998764 2356678999999999999999999975 5899999
Q ss_pred EEEEccc
Q 023186 94 NCNLACL 100 (286)
Q Consensus 94 ~V~~a~~ 100 (286)
++-|.+.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9998854
No 86
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.36 E-value=1.3e-06 Score=81.66 Aligned_cols=86 Identities=27% Similarity=0.271 Sum_probs=76.4
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEE--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-Cc
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--------EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PV 87 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~--------~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~ 87 (286)
.+.....+|||-+|+..+++++|.++|.+++.|. .|+|-+|++|++.|+-|.|+|+|...|+.||+-++ ..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 4466788999999999999999999999999885 46778899999999999999999999999999996 56
Q ss_pred cCCeeeEEEEcccCC
Q 023186 88 IDGRRANCNLACLGV 102 (286)
Q Consensus 88 i~Gr~i~V~~a~~~~ 102 (286)
+.+..|+|.+|..+.
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 999999999986544
No 87
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.35 E-value=3.6e-06 Score=65.75 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=65.7
Q ss_pred cEEEEcCCCccCCHHHHHHHHHh--cCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-cc----CCeeeEE
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQ--FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI----DGRRANC 95 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~--fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i----~Gr~i~V 95 (286)
++|.|+|||...|.++|.+++.. .|+...+-++.|..+..+.|||||.|.+.+.|.+-.+..+. .+ ..+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 78999999999999999998854 46777788999999999999999999999999999988853 23 3567788
Q ss_pred EEccc
Q 023186 96 NLACL 100 (286)
Q Consensus 96 ~~a~~ 100 (286)
.+|+.
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88753
No 88
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.32 E-value=1.5e-06 Score=84.00 Aligned_cols=79 Identities=22% Similarity=0.288 Sum_probs=66.9
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~-v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a 98 (286)
.....|-+++||+.|+|+||.+||+-.--|.. +.++.|+ .+++.|-|||.|++.|.|++||......|.-|-|+|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 46788999999999999999999987754444 3345554 478999999999999999999999888899999999877
Q ss_pred c
Q 023186 99 C 99 (286)
Q Consensus 99 ~ 99 (286)
+
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 5
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.15 E-value=2.4e-06 Score=83.94 Aligned_cols=90 Identities=23% Similarity=0.435 Sum_probs=80.5
Q ss_pred CCCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCee
Q 023186 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRR 92 (286)
Q Consensus 14 ~~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~ 92 (286)
.....-....+|||++||..+++++++|+.+.||.++...++.|..++-+|||||.+|.|......||..+|.. +.+++
T Consensus 281 ~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 281 ASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred cccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 34445567789999999999999999999999999999999999999999999999999999999999999976 88899
Q ss_pred eEEEEcccCCC
Q 023186 93 ANCNLACLGVQ 103 (286)
Q Consensus 93 i~V~~a~~~~~ 103 (286)
|.|..|.....
T Consensus 361 lvvq~A~~g~~ 371 (500)
T KOG0120|consen 361 LVVQRAIVGAS 371 (500)
T ss_pred eEeehhhccch
Confidence 99988865443
No 90
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.13 E-value=7.8e-06 Score=76.31 Aligned_cols=77 Identities=19% Similarity=0.381 Sum_probs=65.0
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcC--CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG--~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
+.....+||+||.|.+|+++|.+.+..-| .|.++++..++.+|.+||||+|...+..++++.|+.|. ++|.|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 33456789999999999999988887665 67788888899999999999999999999999999996 5688865444
No 91
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.12 E-value=1.1e-06 Score=85.85 Aligned_cols=85 Identities=21% Similarity=0.304 Sum_probs=76.7
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V 95 (286)
..++...++||+--|...+++.+|.+||+.+|.|.+|.||.|+.++++||.++|+|.|.+++..||...+..+.|..|.|
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~v 252 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIV 252 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEe
Confidence 34566788999999999999999999999999999999999999999999999999999999999977777789999988
Q ss_pred EEccc
Q 023186 96 NLACL 100 (286)
Q Consensus 96 ~~a~~ 100 (286)
.....
T Consensus 253 q~sEa 257 (549)
T KOG0147|consen 253 QLSEA 257 (549)
T ss_pred cccHH
Confidence 77643
No 92
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.02 E-value=9.3e-06 Score=64.36 Aligned_cols=70 Identities=29% Similarity=0.418 Sum_probs=44.7
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-----C-ccCCeeeEEE
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-----P-VIDGRRANCN 96 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-----~-~i~Gr~i~V~ 96 (286)
+.|.|.++...++.++|+++|++||.|..|.+..... -|+|.|.+.++|++|++.+. . .|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4688999999999999999999999999998876532 79999999999999999873 1 3777777766
Q ss_pred Ec
Q 023186 97 LA 98 (286)
Q Consensus 97 ~a 98 (286)
+-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 54
No 93
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.99 E-value=6.5e-06 Score=76.26 Aligned_cols=80 Identities=26% Similarity=0.406 Sum_probs=70.8
Q ss_pred CccEEE-EcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 023186 21 TYTKVF-VGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (286)
Q Consensus 21 ~~~~Lf-VgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a~ 99 (286)
...++| |++|+.++++++|+++|..+|.|..+++..++.++..+||++|+|.+.++..+++..-...|.++.+.++...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 344555 9999999999999999999999999999999999999999999999999999999883355899989888775
Q ss_pred c
Q 023186 100 L 100 (286)
Q Consensus 100 ~ 100 (286)
.
T Consensus 263 ~ 263 (285)
T KOG4210|consen 263 P 263 (285)
T ss_pred C
Confidence 4
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.98 E-value=6.9e-06 Score=72.78 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=63.6
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
...+.+.|+|.+|+..+.+.+|+++|+++|.+....+ .++++||+|++.+++.+||+.++ ..|.+++|.|.
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 4667899999999999999999999999999955544 24599999999999999999997 56999999995
Q ss_pred Ec
Q 023186 97 LA 98 (286)
Q Consensus 97 ~a 98 (286)
..
T Consensus 167 ~~ 168 (216)
T KOG0106|consen 167 KN 168 (216)
T ss_pred cc
Confidence 54
No 95
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.98 E-value=6.3e-05 Score=71.59 Aligned_cols=74 Identities=14% Similarity=0.241 Sum_probs=66.0
Q ss_pred ccEEEEcCCCcc-CCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcc
Q 023186 22 YTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (286)
Q Consensus 22 ~~~LfVgnLp~~-vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~ 99 (286)
...|.|.||.++ +|.+.|..+|..||+|.+|+|+.+|. --|.|.+.|...|+-|++.|+ +.|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 578899999765 99999999999999999999998763 479999999999999999997 56999999999986
Q ss_pred c
Q 023186 100 L 100 (286)
Q Consensus 100 ~ 100 (286)
-
T Consensus 372 H 372 (492)
T KOG1190|consen 372 H 372 (492)
T ss_pred C
Confidence 3
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.97 E-value=3.6e-05 Score=58.32 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=46.7
Q ss_pred cEEEEcCCCccCCHHH----HHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEEE
Q 023186 23 TKVFVGGLAWETQKET----MEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCN 96 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~----L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V~ 96 (286)
..|+|.|||.+.+... |++++..+| .|.+|. .+-|+|.|.+.|.|++|.+.|+.+ +.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999988765 566776676 555541 357999999999999999999765 999999999
Q ss_pred Ecc
Q 023186 97 LAC 99 (286)
Q Consensus 97 ~a~ 99 (286)
...
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 97
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.83 E-value=2e-05 Score=75.35 Aligned_cols=70 Identities=23% Similarity=0.272 Sum_probs=59.3
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeec---CCC--CC--------cccEEEEEeCCHHHHHHHHHhc
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD---KAT--GR--------SKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~d---k~t--g~--------skGfgFV~F~~~e~A~~Ai~~l 84 (286)
++.+.++|.+.|||.+-.-+.|.++|..+|.|+.|+|... +.+ +. .+-||||+|++.+.|.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3458999999999999888999999999999999999776 322 21 2568999999999999999999
Q ss_pred CCc
Q 023186 85 APV 87 (286)
Q Consensus 85 ~~~ 87 (286)
+.+
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 754
No 98
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.81 E-value=2.5e-05 Score=69.16 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=52.0
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~ 85 (286)
+..-..+|||.||..+|+|++||.+|++|-....++|... ..-..+||+|++.+.|..||..+.
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHHhh
Confidence 3445679999999999999999999999987766666332 123589999999999999999874
No 99
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.79 E-value=5.8e-05 Score=52.41 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=42.5
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai 81 (286)
+.|-|.+.+.+..+ ++.++|.+||+|.++.+... +.+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 56888899887764 45669999999999888632 349999999999999985
No 100
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00019 Score=70.14 Aligned_cols=69 Identities=32% Similarity=0.355 Sum_probs=63.3
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHH-hcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~-~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
...-++.++||||+||.-++.++|..+|+ -||.|+-|-|-+|++-+-.||-|=|+|.+..+-.+||++-
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 34556789999999999999999999997 7999999999999888999999999999999999999976
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.59 E-value=0.00018 Score=72.38 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=66.4
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V 95 (286)
+...-.+.|-|.|+|++++-|||.+||.-|-.+..-.+++-.+.|+..|-|.|.|++.|+|.+|...++. .|..|+|++
T Consensus 862 ~~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l 941 (944)
T KOG4307|consen 862 IKSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSL 941 (944)
T ss_pred cCCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEE
Confidence 3344456899999999999999999999996555444445456799999999999999999999999974 599998887
Q ss_pred EE
Q 023186 96 NL 97 (286)
Q Consensus 96 ~~ 97 (286)
.+
T Consensus 942 ~i 943 (944)
T KOG4307|consen 942 RI 943 (944)
T ss_pred Ee
Confidence 65
No 102
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.58 E-value=6.1e-05 Score=71.71 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=60.9
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC---CccCCeeeEEEE
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRANCNL 97 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~---~~i~Gr~i~V~~ 97 (286)
..+.|.++||||+++|+||-+++..||.|..+.+++.++ -+|++|.|+++|..-+.... ..+.++.|.|.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 678999999999999999999999999999999887654 79999999999877444332 348888888877
Q ss_pred cc
Q 023186 98 AC 99 (286)
Q Consensus 98 a~ 99 (286)
+.
T Consensus 101 sn 102 (492)
T KOG1190|consen 101 SN 102 (492)
T ss_pred hh
Confidence 53
No 103
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00022 Score=69.68 Aligned_cols=64 Identities=27% Similarity=0.502 Sum_probs=50.5
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCC---CCCccc---EEEEEeCCHHHHHHHHHhc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKA---TGRSKG---YGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~---tg~skG---fgFV~F~~~e~A~~Ai~~l 84 (286)
.-.++|||++||++++|++|...|.+||.+ .|++....+ ---.+| |.|+.|+++.++.+-|.+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 457899999999999999999999999986 455553211 123467 9999999999988877665
No 104
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.48 E-value=0.00038 Score=61.60 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=61.4
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccC-CeeeEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VID-GRRANCN 96 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~-Gr~i~V~ 96 (286)
..+...||+.|||.+++.+.|..+|++|...++|+++..+ ++.+||+|.+...+..|...+.. .|. ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4567899999999999999999999999999999988753 57999999999998888888753 233 5556665
Q ss_pred Ec
Q 023186 97 LA 98 (286)
Q Consensus 97 ~a 98 (286)
.+
T Consensus 218 ~a 219 (221)
T KOG4206|consen 218 FA 219 (221)
T ss_pred cc
Confidence 54
No 105
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.41 E-value=0.00064 Score=53.44 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=52.7
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEe-ecC------CCCCcccEEEEEeCCHHHHHHHHHhcCCccCCe
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVI-TDK------ATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~-~dk------~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr 91 (286)
+...+.|.|-+.|+.. ...|.++|++||+|.+..-. ++. ..-.....-.|+|+++.+|++||.+...+|.|.
T Consensus 3 ~~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~ 81 (100)
T PF05172_consen 3 QDSETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGS 81 (100)
T ss_dssp -GGCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTC
T ss_pred CcCCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCc
Confidence 3456678888999984 56788899999999887511 110 001234588999999999999999988888875
Q ss_pred -eeEEEEcc
Q 023186 92 -RANCNLAC 99 (286)
Q Consensus 92 -~i~V~~a~ 99 (286)
.+-|...+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 45566653
No 106
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.34 E-value=0.002 Score=55.76 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=61.3
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-Cc--cCCee
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PV--IDGRR 92 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~--i~Gr~ 92 (286)
+.......+|.|.+||.+.++.+||++..+-|+|+...+.+| |.+.|+|...|+.+-||++|. .. -.|..
T Consensus 109 ppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~ 181 (241)
T KOG0105|consen 109 PPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGET 181 (241)
T ss_pred CcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcE
Confidence 344556789999999999999999999999999999999887 489999999999999999985 22 34544
Q ss_pred eEEEE
Q 023186 93 ANCNL 97 (286)
Q Consensus 93 i~V~~ 97 (286)
.-+.+
T Consensus 182 ~yirv 186 (241)
T KOG0105|consen 182 AYIRV 186 (241)
T ss_pred eeEEe
Confidence 44433
No 107
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.32 E-value=0.00053 Score=64.05 Aligned_cols=78 Identities=22% Similarity=0.425 Sum_probs=58.9
Q ss_pred ccEEEEcCCCccCCHHH----H--HHHHHhcCCEEEEEEeecCCC-CCcccEE--EEEeCCHHHHHHHHHhcCC-ccCCe
Q 023186 22 YTKVFVGGLAWETQKET----M--EKYFEQFGEILEAVVITDKAT-GRSKGYG--FVTFREPEAAMKACVDAAP-VIDGR 91 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~----L--~~~F~~fG~I~~v~i~~dk~t-g~skGfg--FV~F~~~e~A~~Ai~~l~~-~i~Gr 91 (286)
-.-+||-+|+..+-.|+ | .++|.+||.|.+|.|.+...+ ....+.+ +|+|.+.|+|.++|.+... .++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 34578999998877665 3 589999999999887654311 1112223 8999999999999999974 59999
Q ss_pred eeEEEEcc
Q 023186 92 RANCNLAC 99 (286)
Q Consensus 92 ~i~V~~a~ 99 (286)
.|++..-.
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99987654
No 108
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.20 E-value=0.0021 Score=60.85 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=69.0
Q ss_pred CCCCCCCccEEEEcCCCcc-CCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCee
Q 023186 15 GQFGDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRR 92 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~-vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~ 92 (286)
.+.+..+.+.+.|-+|... ++-+.|..+|-.||.|++|++++.| .|-|.|++.|..++++|+..||.. +.|.+
T Consensus 280 ~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 280 SPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 3456677889999999865 6667899999999999999999876 468999999999999999999754 89999
Q ss_pred eEEEEcc
Q 023186 93 ANCNLAC 99 (286)
Q Consensus 93 i~V~~a~ 99 (286)
|+|..++
T Consensus 355 l~v~~Sk 361 (494)
T KOG1456|consen 355 LNVCVSK 361 (494)
T ss_pred EEEeecc
Confidence 9998875
No 109
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0017 Score=64.32 Aligned_cols=78 Identities=26% Similarity=0.295 Sum_probs=61.7
Q ss_pred CCccEEEEcCCCccCC------HHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccC-Ce
Q 023186 20 TTYTKVFVGGLAWETQ------KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VID-GR 91 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vt------ee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~-Gr 91 (286)
.-+..|+|.|+|.--. ..-|.++|+++|+|....++.+.++| .+||.|++|++..+|++|++.++. .|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 4567899999986422 23467899999999999999887755 999999999999999999999974 344 56
Q ss_pred eeEEEEc
Q 023186 92 RANCNLA 98 (286)
Q Consensus 92 ~i~V~~a 98 (286)
.+.|++-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 6666554
No 110
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.15 E-value=0.0025 Score=45.65 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=47.3
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhc---CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQF---GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~f---G~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
....+|+|.+|.. ++.++|+.+|..| .....|.++.|. -|-|.|.|.+.|.+||..|
T Consensus 3 ~rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4567899999965 7778899999888 235688899886 5899999999999999864
No 111
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.07 E-value=0.0032 Score=59.08 Aligned_cols=77 Identities=23% Similarity=0.345 Sum_probs=60.7
Q ss_pred CCCCccEEEEcCCC----ccCC-------HHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 023186 18 GDTTYTKVFVGGLA----WETQ-------KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (286)
Q Consensus 18 ~d~~~~~LfVgnLp----~~vt-------ee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~ 86 (286)
.....++|.|.||= .+.+ +++|++-.++||.|.+|+|.-. .+.|.+-|.|.+.++|..||+.|+.
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcC
Confidence 34567889999871 1222 4677788999999999877532 3578999999999999999999975
Q ss_pred -ccCCeeeEEEEc
Q 023186 87 -VIDGRRANCNLA 98 (286)
Q Consensus 87 -~i~Gr~i~V~~a 98 (286)
.|+||.|..++-
T Consensus 337 R~fdgRql~A~i~ 349 (382)
T KOG1548|consen 337 RWFDGRQLTASIW 349 (382)
T ss_pred eeecceEEEEEEe
Confidence 599999988765
No 112
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.90 E-value=0.0017 Score=61.65 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=64.0
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcC-CEEE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEEEE
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFG-EILE--AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNL 97 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG-~I~~--v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V~~ 97 (286)
...|-+++||.+.+.|+|.+||..|- .|+. |.++.+. .|+..|-|||+|.+.|+|..|+.+.++. ...|.|+|..
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 55688999999999999999998886 3333 6666664 5999999999999999999999888654 5689999987
Q ss_pred ccc
Q 023186 98 ACL 100 (286)
Q Consensus 98 a~~ 100 (286)
++.
T Consensus 359 ~S~ 361 (508)
T KOG1365|consen 359 CSV 361 (508)
T ss_pred ccH
Confidence 753
No 113
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.85 E-value=0.0012 Score=62.59 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=58.9
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHh---c-CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEE
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQ---F-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~---f-G~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V 95 (286)
...-.|-+++||+++++.++.+||.. . +.++.|.+++.+ .+|..|-|||.|..+++|..||.+....|.-|-|++
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 34556778899999999999999952 2 244555555543 589999999999999999999998766666666665
Q ss_pred EE
Q 023186 96 NL 97 (286)
Q Consensus 96 ~~ 97 (286)
..
T Consensus 238 FR 239 (508)
T KOG1365|consen 238 FR 239 (508)
T ss_pred HH
Confidence 43
No 114
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.82 E-value=0.0032 Score=62.26 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCEEEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEc
Q 023186 37 ETMEKYFEQFGEILEAVVITDKA---TGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (286)
Q Consensus 37 e~L~~~F~~fG~I~~v~i~~dk~---tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a 98 (286)
|+++..+.+||.|..|+|.++-. -.-..|..||+|.+.+++++|+++|+. .+.+|.+.++.-
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 34566778999999999988722 233457889999999999999999975 599999888765
No 115
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.81 E-value=0.00063 Score=69.96 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=69.4
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEEEEccc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLACL 100 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V~~a~~ 100 (286)
-.+|||.|+|+..|+++|+.+|+++|.++++.+++.+ .|+.||.+||.|.++.++.+++...... +.-+.++|.+..+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4689999999999999999999999999999988876 4999999999999999999998887643 6677777777655
Q ss_pred CCC
Q 023186 101 GVQ 103 (286)
Q Consensus 101 ~~~ 103 (286)
...
T Consensus 815 ~~~ 817 (881)
T KOG0128|consen 815 ERD 817 (881)
T ss_pred ccc
Confidence 333
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.76 E-value=0.0045 Score=51.73 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEcccCC
Q 023186 38 TMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACLGV 102 (286)
Q Consensus 38 ~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a~~~~ 102 (286)
+|.+.|.+||++.-++++-+ .-.|+|.+-++|.+|+......|.|+.|+|+++.+..
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccH
Confidence 56778889999888887765 4799999999999999999888999999999987654
No 117
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.66 E-value=0.0016 Score=58.76 Aligned_cols=72 Identities=15% Similarity=0.252 Sum_probs=59.1
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCC--------CCccc----EEEEEeCCHHHHHHHHHhcCC-c
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT--------GRSKG----YGFVTFREPEAAMKACVDAAP-V 87 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~t--------g~skG----fgFV~F~~~e~A~~Ai~~l~~-~ 87 (286)
..-.||+++||+.++-..|+++|++||+|-.|.|-....+ +.++. -|.|+|.+...|++..+.||. .
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999999988776554 23332 356999999999999999875 4
Q ss_pred cCCee
Q 023186 88 IDGRR 92 (286)
Q Consensus 88 i~Gr~ 92 (286)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 88765
No 118
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.60 E-value=0.0029 Score=60.25 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=64.1
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEE
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT---GRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~t---g~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~ 96 (286)
.....|-|.||.+.++.++|+.||.-.|+|.++.|...... ......|||.|.|...+..|-...|.+|-++.|.|.
T Consensus 5 ~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 5 SSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred CCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 34558999999999999999999999999999988753321 234568999999999999998888887666666665
Q ss_pred Ec
Q 023186 97 LA 98 (286)
Q Consensus 97 ~a 98 (286)
..
T Consensus 85 p~ 86 (479)
T KOG4676|consen 85 PY 86 (479)
T ss_pred ec
Confidence 54
No 119
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.44 E-value=0.0029 Score=57.13 Aligned_cols=62 Identities=27% Similarity=0.419 Sum_probs=56.2
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~ 85 (286)
..|+|.||..-++.|.|++-|++||+|...+++-|- .++..+-++|+|...-.+.+|++...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 789999999999999999999999999988777774 47888899999999999999999874
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.38 E-value=0.00013 Score=74.75 Aligned_cols=70 Identities=26% Similarity=0.358 Sum_probs=61.4
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCC
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG 90 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~G 90 (286)
+..++||.||+..+.+++|+..|..++.|..+.|.-.+++++.||.|+|+|.+.+++.+||......+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 4568999999999999999999999998888877766778999999999999999999999987655444
No 121
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.35 E-value=0.0019 Score=58.32 Aligned_cols=62 Identities=29% Similarity=0.326 Sum_probs=48.4
Q ss_pred HHHHHHHH-hcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEcc
Q 023186 37 ETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (286)
Q Consensus 37 e~L~~~F~-~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a~ 99 (286)
|+|...|+ +||+|++++|..+. .-..+|=.+|.|..+++|++|++.||. .+.|+.|.+++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444444 89999998765442 234578899999999999999999975 5999999988875
No 122
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.22 E-value=0.014 Score=53.75 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCEEEEEEeecCCCCCcc-cEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEEEE
Q 023186 36 KETMEKYFEQFGEILEAVVITDKATGRSK-GYGFVTFREPEAAMKACVDAAPV-IDGRRANCNL 97 (286)
Q Consensus 36 ee~L~~~F~~fG~I~~v~i~~dk~tg~sk-GfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V~~ 97 (286)
|+++++.+++||.|..|.|..++..-... ---||+|+..++|.+|+..||.. |.||.++.-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 45788999999999999888775433222 34799999999999999999865 8888776443
No 123
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.18 E-value=0.003 Score=60.68 Aligned_cols=76 Identities=22% Similarity=0.329 Sum_probs=58.0
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC--ccCCeeeEEEEcc
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP--VIDGRRANCNLAC 99 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~--~i~Gr~i~V~~a~ 99 (286)
.+||++||.+.++..+|+.+|...- ....-.++ ..||+||...|...|.+|++.++. ++.|++++|+..-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 5799999999999999999995431 11111122 247999999999999999999973 4999999998876
Q ss_pred cCCCCC
Q 023186 100 LGVQRS 105 (286)
Q Consensus 100 ~~~~~~ 105 (286)
++..++
T Consensus 75 ~kkqrs 80 (584)
T KOG2193|consen 75 PKKQRS 80 (584)
T ss_pred hHHHHh
Confidence 554443
No 124
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.17 E-value=0.012 Score=55.80 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=63.8
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc--CCc-cCCee
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA--APV-IDGRR 92 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l--~~~-i~Gr~ 92 (286)
+.....+-.|.|++|-..++|.+|.+-++.||.|.-|.++..+ .-+.|+|+|.+.|++++... +.+ |.|+.
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~ 98 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQ 98 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCch
Confidence 3344456789999999999999999999999999988776553 37999999999999988765 444 88888
Q ss_pred eEEEEcc
Q 023186 93 ANCNLAC 99 (286)
Q Consensus 93 i~V~~a~ 99 (286)
.-++.+.
T Consensus 99 Al~NySt 105 (494)
T KOG1456|consen 99 ALFNYST 105 (494)
T ss_pred hhcccch
Confidence 8887774
No 125
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.11 E-value=0.0099 Score=58.94 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=61.2
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHH--hcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC---CccCCee
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFE--QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRR 92 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~--~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~---~~i~Gr~ 92 (286)
...+.|.|.++-|++.+.+|++|.+|+ .+-++++|.+-.+. -=||+|++..||+.|.+.|. ++|.||.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 445778899999999999999999994 57788888775543 26999999999999999984 4588998
Q ss_pred eEEEEcc
Q 023186 93 ANCNLAC 99 (286)
Q Consensus 93 i~V~~a~ 99 (286)
|..+++.
T Consensus 244 ImARIKa 250 (684)
T KOG2591|consen 244 IMARIKA 250 (684)
T ss_pred hhhhhhh
Confidence 8766553
No 126
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.08 E-value=0.0059 Score=61.92 Aligned_cols=81 Identities=16% Similarity=0.080 Sum_probs=62.8
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeee
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRA 93 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~-v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i 93 (286)
++...-...|||..||..+++.++.++|++.-.|++ |.|... -+++.++.|||+|..++++.+|+....+. +.-|.|
T Consensus 428 p~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~i 506 (944)
T KOG4307|consen 428 PFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRII 506 (944)
T ss_pred CCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEE
Confidence 445556789999999999999999999988877877 444443 36788899999999988888777666543 666777
Q ss_pred EEEE
Q 023186 94 NCNL 97 (286)
Q Consensus 94 ~V~~ 97 (286)
+|.-
T Consensus 507 rv~s 510 (944)
T KOG4307|consen 507 RVDS 510 (944)
T ss_pred Eeec
Confidence 7753
No 127
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.07 E-value=0.017 Score=43.79 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=42.5
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~ 85 (286)
....+|. +|.++...||.++|+.||.| .|.++.|. -|||...+++.|..++..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 4455565 99999999999999999987 56666664 69999999999999988875
No 128
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.72 E-value=0.076 Score=44.32 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=59.8
Q ss_pred CCCCCCccEEEEcCCCccCC-HHHHH---HHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCe
Q 023186 16 QFGDTTYTKVFVGGLAWETQ-KETME---KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vt-ee~L~---~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr 91 (286)
...|....+|.|+=|..++. .|||+ ..++.||.|.+|.+.- +--|.|.|+|..+|=+|+.+.....-|.
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgt 152 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGT 152 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCc
Confidence 34577788999987777654 24444 4557899999987642 2369999999999999999998788899
Q ss_pred eeEEEEcc
Q 023186 92 RANCNLAC 99 (286)
Q Consensus 92 ~i~V~~a~ 99 (286)
.+.|+|-.
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 99998863
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.03 E-value=0.027 Score=58.71 Aligned_cols=78 Identities=26% Similarity=0.379 Sum_probs=65.6
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCC--eeeE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDG--RRAN 94 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~G--r~i~ 94 (286)
.....+.++|++|...+....|...|..||.|..|.+-.. .-|++|.+++.+.+..||+.+... |.+ ++|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 3456789999999999999999999999999999877432 349999999999999999999654 554 7799
Q ss_pred EEEcccC
Q 023186 95 CNLACLG 101 (286)
Q Consensus 95 V~~a~~~ 101 (286)
|.++...
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 9998643
No 130
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.02 E-value=0.023 Score=56.82 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=62.6
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHH-hcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc----cC
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV----ID 89 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~-~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~----i~ 89 (286)
++.-....+.|+|.||-.-.|.-+|++++. ..|.|++.+| |+ -|-.|||.|.+.++|.+.+.+|+.+ -+
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 334556688999999999999999999997 5667777744 32 2558999999999999999999643 45
Q ss_pred CeeeEEEEcc
Q 023186 90 GRRANCNLAC 99 (286)
Q Consensus 90 Gr~i~V~~a~ 99 (286)
.+.|.+.+..
T Consensus 511 PK~L~adf~~ 520 (718)
T KOG2416|consen 511 PKHLIADFVR 520 (718)
T ss_pred CceeEeeecc
Confidence 6888888775
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.60 E-value=0.0079 Score=62.51 Aligned_cols=67 Identities=16% Similarity=0.289 Sum_probs=56.8
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~ 85 (286)
+.....+||++||+..+++.+|+..|..+|.|.+|.|-+.+. +.-.-|+||.|.+.+.+-+|+..+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s 434 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEES 434 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhc
Confidence 345678999999999999999999999999999999876643 3334599999999999999988874
No 132
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.32 E-value=0.034 Score=56.26 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=61.5
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V 95 (286)
......-+|||+||...+.++-++.+...+|-|.+++.+. |+|.+|.+.....+|+..+.. .+++..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3445678999999999999999999999999987775533 999999999999999999974 488888776
Q ss_pred EEc
Q 023186 96 NLA 98 (286)
Q Consensus 96 ~~a 98 (286)
+..
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 653
No 133
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.31 E-value=0.15 Score=47.30 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=54.1
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCee-eEEEEcc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR-ANCNLAC 99 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~-i~V~~a~ 99 (286)
+.-|-|-+++..-. ..|..+|+++|+|++.+.. +.-.+-.|.|.++.+|.|||.+...+|++.. |-|+.+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecC
Confidence 56777778887644 4577899999999887654 2345999999999999999999888888754 4455543
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.27 E-value=0.017 Score=54.03 Aligned_cols=78 Identities=28% Similarity=0.417 Sum_probs=56.7
Q ss_pred ccEEEEcCCCccCCHHHH---HHHHHhcCCEEEEEEeecCC-CCCc--ccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeE
Q 023186 22 YTKVFVGGLAWETQKETM---EKYFEQFGEILEAVVITDKA-TGRS--KGYGFVTFREPEAAMKACVDAAPV-IDGRRAN 94 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L---~~~F~~fG~I~~v~i~~dk~-tg~s--kGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~ 94 (286)
...+||-+|+..+..+++ .+.|.+||.|.+|.+.++.. .... ..-++|+|+..|+|.+||...+.+ ++++.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 456788888877665544 36788999999998887762 1111 123799999999999999999754 7777766
Q ss_pred EEEcc
Q 023186 95 CNLAC 99 (286)
Q Consensus 95 V~~a~ 99 (286)
..+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 65554
No 135
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.49 E-value=0.057 Score=52.77 Aligned_cols=73 Identities=19% Similarity=0.167 Sum_probs=57.1
Q ss_pred ccEEEEcCCCccC-CHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEccc
Q 023186 22 YTKVFVGGLAWET-QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (286)
Q Consensus 22 ~~~LfVgnLp~~v-tee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a~~ 100 (286)
.+.|-+.-+++.. +.++|..+|.+||+|..|.|-.... -|.|+|.+..+|-+|-....-+|++|.|+|.|-++
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3444444455543 4578999999999999998755432 68999999999988877777789999999999876
No 136
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=92.95 E-value=0.072 Score=49.52 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=68.1
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEcc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a~ 99 (286)
..+++||+++.+.+.++++..+|.+.|.+..+.+........+++++.|+|+..+.+..|+..... .+.++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 478999999999999998999999999888888877777889999999999999999999998864 5777776665554
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.95 E-value=0.61 Score=34.21 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=34.6
Q ss_pred ccCCHHHHHHHHHhcC-----CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEc
Q 023186 32 WETQKETMEKYFEQFG-----EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (286)
Q Consensus 32 ~~vtee~L~~~F~~fG-----~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a 98 (286)
..++..+|..++..-. +|-+++|..+ |+||+-.. +.++++++.++. .+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4578888888887654 4456666544 89999865 477889999874 599999999875
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.68 E-value=0.55 Score=40.92 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=43.1
Q ss_pred CHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC--Cc-cCCeeeEEEEcc
Q 023186 35 QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA--PV-IDGRRANCNLAC 99 (286)
Q Consensus 35 tee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~--~~-i~Gr~i~V~~a~ 99 (286)
..+.|+++|.+++.+....+++. -+-..|.|.+.++|.+|...+. .. +.|.+|+|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 45789999999999888877654 2367899999999999999987 44 999999998884
No 139
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.60 E-value=0.18 Score=43.58 Aligned_cols=81 Identities=16% Similarity=0.118 Sum_probs=46.3
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHh-cCCE---EEEEEeecC-CCC-CcccEEEEEeCCHHHHHHHHHhcCC-c-cCC
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQ-FGEI---LEAVVITDK-ATG-RSKGYGFVTFREPEAAMKACVDAAP-V-IDG 90 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~-fG~I---~~v~i~~dk-~tg-~skGfgFV~F~~~e~A~~Ai~~l~~-~-i~G 90 (286)
+....+|.|++||+++||+++.+.++. +++. ..+.-.... ... ..-.-|+|.|.+.+++..-+...+. . ++.
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345679999999999999999886665 5544 233311221 111 1235689999999999888888863 3 332
Q ss_pred ----eeeEEEEcc
Q 023186 91 ----RRANCNLAC 99 (286)
Q Consensus 91 ----r~i~V~~a~ 99 (286)
.+..|++|.
T Consensus 84 kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 84 KGNEYPAVVEFAP 96 (176)
T ss_dssp TS-EEEEEEEE-S
T ss_pred CCCCcceeEEEcc
Confidence 344566664
No 140
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.16 E-value=0.2 Score=52.16 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=59.9
Q ss_pred EEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-Cc--cCCeeeEEEEccc
Q 023186 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PV--IDGRRANCNLACL 100 (286)
Q Consensus 24 ~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~--i~Gr~i~V~~a~~ 100 (286)
+..+.|.+-..+...|..+|++||+|.+++.++|-+ .+.|+|...+.|..|++.+. ++ +.|-..+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 445666777788899999999999999999988865 89999999999999999984 33 6677888888864
Q ss_pred C
Q 023186 101 G 101 (286)
Q Consensus 101 ~ 101 (286)
-
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 3
No 141
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=88.29 E-value=0.89 Score=45.41 Aligned_cols=54 Identities=19% Similarity=0.184 Sum_probs=39.7
Q ss_pred cCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC----ccCC-eeeEEEEcc
Q 023186 46 FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP----VIDG-RRANCNLAC 99 (286)
Q Consensus 46 fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~----~i~G-r~i~V~~a~ 99 (286)
.|.-..+.++.|-.+....|||||.|.+.+++.++.++.+. .|.. +.+++.+|+
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 44445566777777788899999999999999999998863 2443 445555554
No 142
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=87.98 E-value=8.2 Score=30.75 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=44.3
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~ 86 (286)
..+-+...|.-++.++|..+.+.+- .|+.++|++|. ..++=.+.++|.+.++|.+-.+..|.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNG 76 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCC
Confidence 3444444555566677766666554 56788888874 34566889999999999999998874
No 143
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=84.09 E-value=0.21 Score=44.56 Aligned_cols=68 Identities=26% Similarity=0.280 Sum_probs=58.2
Q ss_pred CCCCCCccEEEEcC----CCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 023186 16 QFGDTTYTKVFVGG----LAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 16 ~~~d~~~~~LfVgn----Lp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
-.+++.-.+++.|+ |.+.+++|.+.+.|++-+.|+.+++.++.+ ++.+.++||++......-.++...
T Consensus 74 l~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 74 LEEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred hccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhh
Confidence 45666778899999 999999999999999999999999999876 899999999998777776766654
No 144
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=82.36 E-value=5.5 Score=41.07 Aligned_cols=67 Identities=7% Similarity=-0.009 Sum_probs=45.1
Q ss_pred cEEEEcCC--CccCCHHHHHHHHHhcCCEE-----EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 23 TKVFVGGL--AWETQKETMEKYFEQFGEIL-----EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 23 ~~LfVgnL--p~~vtee~L~~~F~~fG~I~-----~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
.++||. + ...++..+|-.++..-+.|. .|+|..+ |.||+... +.+.+.++.++ ..+.|++|.
T Consensus 487 ~~~~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~ 556 (629)
T PRK11634 487 QLYRIE-VGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMN 556 (629)
T ss_pred EEEEEe-cccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceE
Confidence 345543 3 33477777777776555443 3444333 89999865 45778888885 459999999
Q ss_pred EEEcc
Q 023186 95 CNLAC 99 (286)
Q Consensus 95 V~~a~ 99 (286)
|+.++
T Consensus 557 ~~~~~ 561 (629)
T PRK11634 557 MQLLG 561 (629)
T ss_pred EEECC
Confidence 99875
No 145
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=82.08 E-value=0.13 Score=49.22 Aligned_cols=63 Identities=16% Similarity=0.043 Sum_probs=51.9
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCcc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVI 88 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i 88 (286)
.++|+|.+|+..+...++.+.|+.+|+|....+... ...-+|-|+|....+...|++.++.++
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr~~gre~ 213 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALRSHGRER 213 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHHhcchhh
Confidence 388999999999999999999999999987766432 234578899999999999998886543
No 146
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=81.13 E-value=13 Score=40.05 Aligned_cols=7 Identities=29% Similarity=1.213 Sum_probs=2.7
Q ss_pred CCCCCCC
Q 023186 126 TFQNGGF 132 (286)
Q Consensus 126 ~~~~GG~ 132 (286)
++.+||+
T Consensus 1188 sysgGGY 1194 (1282)
T KOG0921|consen 1188 SYSGGGY 1194 (1282)
T ss_pred CCCCCCc
Confidence 3333433
No 147
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=80.95 E-value=3.2 Score=30.36 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=44.4
Q ss_pred HHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEc
Q 023186 37 ETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (286)
Q Consensus 37 e~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a 98 (286)
++|++.|.+.| +++.+..+..++++..-..-||+.....+... .++ +.|+++++.|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 46888888888 78888888888877777888999876544333 333 3588999888866
No 148
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=80.69 E-value=4 Score=29.63 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=43.9
Q ss_pred HHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcc
Q 023186 37 ETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (286)
Q Consensus 37 e~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~ 99 (286)
++|++.|...| +|.++.-+..+.+.+.-..-||+++...+..+ .++ ..|.+.+|+|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 56788888777 78888888877677777889999986655222 333 34889999998763
No 149
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.62 E-value=4.9 Score=38.96 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=50.0
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCC-EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~-I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~ 85 (286)
+.+-.+.|=|-++|.....|+|...|+.|+. -.+|+|+-|. .+|-.|.+...|.+||..-+
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccC
Confidence 3445678889999999999999999999874 4577787776 69999999999999987633
No 150
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=78.65 E-value=4.6 Score=32.44 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeC-CHHHHHHHHHhc
Q 023186 34 TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR-EPEAAMKACVDA 84 (286)
Q Consensus 34 vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~-~~e~A~~Ai~~l 84 (286)
++.++|++.|+.|..+ +++.+.++. -++|+++|+|. |..-.+.|++.-
T Consensus 29 ~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp --SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHHHHH
Confidence 3557899999999876 466666653 67899999997 555556665543
No 151
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=78.46 E-value=5.7 Score=36.98 Aligned_cols=83 Identities=10% Similarity=0.152 Sum_probs=63.2
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecC-------CCCCcccEEEEEeCCHHHHHHHH----Hhc--
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK-------ATGRSKGYGFVTFREPEAAMKAC----VDA-- 84 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk-------~tg~skGfgFV~F~~~e~A~~Ai----~~l-- 84 (286)
++-..+.|.+.||..+++--.+...|.+||.|++|.++.+. +..+.+....+.|-+++.+..-- ..+
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34467889999999999988888899999999999998765 12334567889999998877643 233
Q ss_pred -CCccCCeeeEEEEccc
Q 023186 85 -APVIDGRRANCNLACL 100 (286)
Q Consensus 85 -~~~i~Gr~i~V~~a~~ 100 (286)
...|....|.|++...
T Consensus 91 fK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHhcCCcceeEEEEEE
Confidence 2348888888887764
No 152
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.80 E-value=3.8 Score=38.05 Aligned_cols=48 Identities=10% Similarity=0.122 Sum_probs=36.6
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCE-EEEEEeecCCCCCcccEEEEEeCCHH
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEI-LEAVVITDKATGRSKGYGFVTFREPE 75 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I-~~v~i~~dk~tg~skGfgFV~F~~~e 75 (286)
-+-|+|+||+.++.-.+|+..+.+-+.+ .++.+ .-++|-||++|.++.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 4569999999999999999999887643 33333 124678999998764
No 153
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=77.25 E-value=12 Score=27.08 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=38.3
Q ss_pred cCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeeeEE
Q 023186 33 ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANC 95 (286)
Q Consensus 33 ~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i~V 95 (286)
.++-++|+..+.+|.- .+ |..|+ | | =||.|.|.++|+++.+..+.. +...+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999963 33 34443 2 2 479999999999999988643 55555443
No 154
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=74.20 E-value=6.9 Score=28.00 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCCEEEEEE
Q 023186 37 ETMEKYFEQFGEILEAVV 54 (286)
Q Consensus 37 e~L~~~F~~fG~I~~v~i 54 (286)
.+||++|+..|+|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999976554
No 155
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.82 E-value=33 Score=34.93 Aligned_cols=80 Identities=15% Similarity=0.285 Sum_probs=57.5
Q ss_pred CCCccEEEEcCCCcc-CCHHHHHHHHHhc----CCEEEEEEeecC----------CCCC---------------------
Q 023186 19 DTTYTKVFVGGLAWE-TQKETMEKYFEQF----GEILEAVVITDK----------ATGR--------------------- 62 (286)
Q Consensus 19 d~~~~~LfVgnLp~~-vtee~L~~~F~~f----G~I~~v~i~~dk----------~tg~--------------------- 62 (286)
....++|-|.||.|+ +..++|.-+|+.| |.|.+|.|-... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 567889999999997 8889999999877 689998874311 1111
Q ss_pred ---------------c-ccEEEEEeCCHHHHHHHHHhcCC-ccC--CeeeEEEEc
Q 023186 63 ---------------S-KGYGFVTFREPEAAMKACVDAAP-VID--GRRANCNLA 98 (286)
Q Consensus 63 ---------------s-kGfgFV~F~~~e~A~~Ai~~l~~-~i~--Gr~i~V~~a 98 (286)
. -=||.|+|.+.+.|.+..+.+.. ++. +.+|.+.+.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1 12789999999999999888854 344 344555444
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=60.82 E-value=1.4 Score=42.90 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=61.3
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEE-eecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEE
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVV-ITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i-~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~ 97 (286)
...+++-|.|+|....++.|..++.++|.++.|.. .+|.+|- ..-|++...+.++.||..+++ .+....++|.+
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 34678999999999999999999999999998864 3444332 334788999999999999985 48888888877
Q ss_pred cc
Q 023186 98 AC 99 (286)
Q Consensus 98 a~ 99 (286)
-.
T Consensus 154 iP 155 (584)
T KOG2193|consen 154 IP 155 (584)
T ss_pred Cc
Confidence 63
No 157
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=60.70 E-value=1.7 Score=30.36 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=23.3
Q ss_pred cccEEEEEeCC-HHHHHHHHHhcCCccCCeeeEEEEcc
Q 023186 63 SKGYGFVTFRE-PEAAMKACVDAAPVIDGRRANCNLAC 99 (286)
Q Consensus 63 skGfgFV~F~~-~e~A~~Ai~~l~~~i~Gr~i~V~~a~ 99 (286)
.+|||||.-++ .++.--.-+.++..++|-++.|++..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 57899999987 23322234556677899999998875
No 158
>PRK11901 hypothetical protein; Reviewed
Probab=59.03 E-value=14 Score=35.02 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=41.3
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEE--EeCCHHHHHHHHHhcCCcc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFV--TFREPEAAMKACVDAAPVI 88 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV--~F~~~e~A~~Ai~~l~~~i 88 (286)
...+|-|.. ..+++.|++|..+++ +..++|...+.+|+.- |..| .|.++++|++||+.|-..|
T Consensus 244 ~~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 244 SHYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHH
Confidence 344555544 355888888888875 4566665544444332 4333 6899999999999996544
No 159
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=58.89 E-value=1.6 Score=43.74 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=52.1
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~ 85 (286)
...++|||.|+.++++-++|..+++.+--+..+.+..+....+.+.+..|+|+---....||.++|
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 456889999999999999999999988777777665554445667789999986666666776665
No 160
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=57.74 E-value=44 Score=33.06 Aligned_cols=64 Identities=11% Similarity=0.157 Sum_probs=52.0
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhc-CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~f-G~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~ 86 (286)
..+.|.|--+|..++--||-.|...| -.|.+++|++|.. -.+=..+|+|.+.++|..-.+..|.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNG 137 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNG 137 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCC
Confidence 37889999999999999998888544 5788999999743 2333578999999999999999874
No 161
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=56.42 E-value=15 Score=31.42 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=43.6
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHH
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAA 77 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A 77 (286)
........+++.+++..++++++..+|..++.+..+.+...........+.++.+.....+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDA 280 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhh
Confidence 3456778999999999999999999999999997777766554333344444444433333
No 162
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=53.03 E-value=14 Score=34.29 Aligned_cols=37 Identities=22% Similarity=0.429 Sum_probs=28.5
Q ss_pred CCccEEEEcCCCcc------------CCHHHHHHHHHhcCCEEEEEEee
Q 023186 20 TTYTKVFVGGLAWE------------TQKETMEKYFEQFGEILEAVVIT 56 (286)
Q Consensus 20 ~~~~~LfVgnLp~~------------vtee~L~~~F~~fG~I~~v~i~~ 56 (286)
..+.+|++.+||-. -+|+-|+..|+.||+|..|.|+.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34567888877642 35778999999999999998753
No 163
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=52.91 E-value=15 Score=32.01 Aligned_cols=74 Identities=20% Similarity=0.193 Sum_probs=49.1
Q ss_pred CCccEEEEcCCCccCCHH-----HHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCe-e
Q 023186 20 TTYTKVFVGGLAWETQKE-----TMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGR-R 92 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee-----~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr-~ 92 (286)
+-.+++++.+|..++-.+ ..+.+|.++-+.....+++ +.++.-|.|.+.+.|.+|..++. ..|.++ .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 445678888888764422 2344555554444333333 23456688999999999999986 458888 7
Q ss_pred eEEEEcc
Q 023186 93 ANCNLAC 99 (286)
Q Consensus 93 i~V~~a~ 99 (286)
|++-++.
T Consensus 82 ~k~yfaQ 88 (193)
T KOG4019|consen 82 LKLYFAQ 88 (193)
T ss_pred EEEEEcc
Confidence 8877774
No 164
>PF15063 TC1: Thyroid cancer protein 1
Probab=52.22 E-value=9.2 Score=28.44 Aligned_cols=58 Identities=19% Similarity=0.241 Sum_probs=40.3
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEE---EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL---EAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~---~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
...-|...+|-=+.||=.+++.+.|+.+|.+-|+.+ .++|+.. .-.|.++..+||..|
T Consensus 18 g~~~dt~~RKkasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~~------------~~~d~ee~a~AL~~L 78 (79)
T PF15063_consen 18 GYKFDTASRKKASANIFENVNLDQLQRLFQKSGDKKAEERARIIWE------------CAQDPEEKARALMAL 78 (79)
T ss_pred CCCcchHHhhhhhhhhhhccCHHHHHHHHHHccchhHHHHHHHHHh------------hCCCHHHHHHHHHhc
Confidence 344556677777899999999999999999999753 2333332 234666666776654
No 165
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=48.05 E-value=22 Score=32.96 Aligned_cols=33 Identities=21% Similarity=0.039 Sum_probs=24.6
Q ss_pred EEEEeCCHHHHHHHHHhcCCccCCeeeEEEEccc
Q 023186 67 GFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (286)
Q Consensus 67 gFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a~~ 100 (286)
|||+|++.++|..|++.... .+.++++|+.|..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~-~~~~~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS-KRPNSWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc-CCCCCceEeeCCC
Confidence 79999999999999996532 2235567777753
No 166
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=45.66 E-value=14 Score=33.48 Aligned_cols=35 Identities=14% Similarity=0.348 Sum_probs=29.5
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEA 52 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v 52 (286)
.......||+-|||..++++.|+++.++.|-+.++
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 44566789999999999999999999999865544
No 167
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=43.87 E-value=1.7e+02 Score=23.84 Aligned_cols=69 Identities=10% Similarity=0.004 Sum_probs=46.1
Q ss_pred cEEEEcCCCcc---CCHHHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCC-eeeEEEE
Q 023186 23 TKVFVGGLAWE---TQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG-RRANCNL 97 (286)
Q Consensus 23 ~~LfVgnLp~~---vtee~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~G-r~i~V~~ 97 (286)
-.|.|...... .+-+.+++.+++-| .++++....+ -..|.|++.|+..+|.+.+...+.. -.|.+++
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl 107 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQD 107 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 34556554222 56678888888776 4455544332 5789999999999999988766544 4566666
Q ss_pred cc
Q 023186 98 AC 99 (286)
Q Consensus 98 a~ 99 (286)
+.
T Consensus 108 ~p 109 (127)
T PRK10629 108 DN 109 (127)
T ss_pred CC
Confidence 53
No 168
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=43.85 E-value=1e+02 Score=20.87 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=40.4
Q ss_pred EEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCH----HHHHHHHHhcC
Q 023186 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP----EAAMKACVDAA 85 (286)
Q Consensus 24 ~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~----e~A~~Ai~~l~ 85 (286)
+|.|.||.-.--...|++.+.+.-.|.++.+.... +-.-|+|... ++..++|+.+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~G 60 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKAG 60 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHhC
Confidence 46677776666677899999999889998886553 3677888633 66777777653
No 169
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=42.52 E-value=34 Score=26.17 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=25.5
Q ss_pred EEEEeCCHHHHHHHHHhcCC-c-cCCeeeEEEEcc
Q 023186 67 GFVTFREPEAAMKACVDAAP-V-IDGRRANCNLAC 99 (286)
Q Consensus 67 gFV~F~~~e~A~~Ai~~l~~-~-i~Gr~i~V~~a~ 99 (286)
|.|+|.+.+-|++-|+.-.+ + +++.+++|....
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P 35 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSP 35 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEe
Confidence 57999999999998887753 3 777777776553
No 170
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=42.40 E-value=60 Score=24.73 Aligned_cols=50 Identities=22% Similarity=0.393 Sum_probs=33.4
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCC
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE 73 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~ 73 (286)
-..-|||++++..+.|...+.+.+..++- ++.++....+ ..||.|-+..+
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~~n--eqG~~~~t~G~ 73 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSDNN--EQGFDFRTLGD 73 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEccCC--CCCEEEEEeCC
Confidence 35679999999999887777766655443 3334433222 67899988843
No 171
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=41.13 E-value=13 Score=28.46 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.5
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHH
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYF 43 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F 43 (286)
....++|-|.|||...+||+|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 4567899999999999999998765
No 172
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=40.46 E-value=82 Score=23.42 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=40.9
Q ss_pred EEEEcCCCccCCHHHHHHHHHh-cC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 023186 24 KVFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 24 ~LfVgnLp~~vtee~L~~~F~~-fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
+-|+-.++.+.+..+|++.+++ |+ .|.+|..+.-+. + .-=|||++.+-++|.+.-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-G--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHHhh
Confidence 4556668899999999999987 55 566665554432 2 225999999888887765544
No 173
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=39.96 E-value=20 Score=22.84 Aligned_cols=16 Identities=13% Similarity=0.435 Sum_probs=10.5
Q ss_pred ccCCHHHHHHHHHhcC
Q 023186 32 WETQKETMEKYFEQFG 47 (286)
Q Consensus 32 ~~vtee~L~~~F~~fG 47 (286)
.++++++||+.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998764
No 174
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=38.62 E-value=86 Score=23.11 Aligned_cols=61 Identities=8% Similarity=0.005 Sum_probs=38.6
Q ss_pred EEEcCCCccCCHHHHHHHHHhcCCE----EEEEEeecCC-CCCcccEEEEEeCCHHHHHHHHHhcC
Q 023186 25 VFVGGLAWETQKETMEKYFEQFGEI----LEAVVITDKA-TGRSKGYGFVTFREPEAAMKACVDAA 85 (286)
Q Consensus 25 LfVgnLp~~vtee~L~~~F~~fG~I----~~v~i~~dk~-tg~skGfgFV~F~~~e~A~~Ai~~l~ 85 (286)
|-..+||..+|.++|.+...+--.+ ..|.+++.-. ..+.|-||+.+=.|.|.++++.+.-+
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~aG 68 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRAG 68 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHcC
Confidence 4567889889999988776543211 1333322111 12346789888899999888877653
No 175
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=37.96 E-value=85 Score=23.75 Aligned_cols=58 Identities=10% Similarity=0.125 Sum_probs=41.3
Q ss_pred EEEEcCCCccCCHHHHHHHHHh-cC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 023186 24 KVFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 24 ~LfVgnLp~~vtee~L~~~F~~-fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
+-|+-.++.+.+..+|++.+++ |+ .|.+|..+.-+. ..-=|||++.+.++|.+....+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 3445557889999999999987 55 566666555432 2235999999988888776554
No 176
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=37.00 E-value=1.4e+02 Score=22.64 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 023186 36 KETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 36 ee~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
++.++++++++| +++++.+.. |+---...+++.|.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHHH
Confidence 466888898876 777777764 344557888999999988876555
No 177
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=36.58 E-value=14 Score=35.89 Aligned_cols=61 Identities=18% Similarity=0.146 Sum_probs=49.2
Q ss_pred ccEEEEcCCCccCCHH--------HHHHHHHh--cCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 023186 22 YTKVFVGGLAWETQKE--------TMEKYFEQ--FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee--------~L~~~F~~--fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~ 82 (286)
-+.+|+.++..+.+.+ ++...|.. ++.+..+...+|..+..++|-.||+|...+.+.+.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4567777777665544 89999987 6777788888887778889999999999999999985
No 178
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=34.91 E-value=1.3e+02 Score=26.39 Aligned_cols=47 Identities=30% Similarity=0.393 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 023186 34 TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 34 vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
.+.++.+++.+++..-. ++|..| +...|-+-+...|.++|.++++.+
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALREI 70 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHHh
Confidence 35677888887776433 344444 334444556669999999999987
No 179
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=34.74 E-value=68 Score=29.43 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=23.7
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEI 49 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I 49 (286)
-|...+++|++ |+..++++.|+.+.+++|--
T Consensus 154 ~Dh~nr~aY~~-lS~Rad~~lLe~fc~~~gy~ 184 (318)
T COG4874 154 MDHPNRTAYAG-LSQRADRELLEVFCEQIGYS 184 (318)
T ss_pred ecccchhhhhh-hhcccCHHHHHHHHHHcCCc
Confidence 45567778875 88889988888888888843
No 180
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.48 E-value=79 Score=26.62 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=37.8
Q ss_pred CCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 023186 29 GLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (286)
Q Consensus 29 nLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~ 85 (286)
.|++.+.+|-|.++.+-.|-|.+.+ -.| -.+.|.|.+.+.+|++++.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 3778888999999999999887765 333 3468999999999999864
No 181
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=34.16 E-value=62 Score=25.89 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=23.0
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEe
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVI 55 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~ 55 (286)
...+++| +...+|+++|++.|.+|-.-.++.|+
T Consensus 34 r~~Nf~v--v~~~Tt~~eiedaF~~f~~RdDIaIi 66 (121)
T KOG3432|consen 34 REPNFLV--VDSKTTVEEIEDAFKSFTARDDIAII 66 (121)
T ss_pred CCCCEEE--EeccCCHHHHHHHHHhhccccCeEEE
Confidence 3444444 35689999999999999765555443
No 182
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=33.80 E-value=79 Score=24.68 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=32.2
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCH
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP 74 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~ 74 (286)
-..-|||++++..+.|..-+.+-+.+++ -++.++... + ...||.|-++.+.
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~-~-~eqG~~~~t~G~~ 76 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWAT-N-TESGFEFQTFGEN 76 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcC-C-CCCCcEEEecCCC
Confidence 3456999999998887655555555544 233343322 2 2349999988754
No 183
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=33.05 E-value=1.4e+02 Score=24.79 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=25.9
Q ss_pred EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 023186 49 ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (286)
Q Consensus 49 I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~ 86 (286)
|.+|.++.. .+||-||+....+++..+|+.+.+
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 555555443 689999999988999999988854
No 184
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=32.67 E-value=1.5e+02 Score=24.10 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHhc-CCEEEEEEe----ecCCCCCcccEEEEEeCCHHHHH
Q 023186 33 ETQKETMEKYFEQF-GEILEAVVI----TDKATGRSKGYGFVTFREPEAAM 78 (286)
Q Consensus 33 ~vtee~L~~~F~~f-G~I~~v~i~----~dk~tg~skGfgFV~F~~~e~A~ 78 (286)
+++.+||+|-+.+. -.-.++.++ +.-.+|++.|||.| |++.|.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 57888898888653 222233333 33346888999986 56666544
No 185
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.62 E-value=7.2 Score=38.31 Aligned_cols=77 Identities=6% Similarity=-0.163 Sum_probs=59.6
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEccc
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACL 100 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~~ 100 (286)
++.|+..|+...++++|.-+|+-+|-|..+.+.+.-+.+..+-.+||+-.. +++..+|..+. ..+.+..++|.+++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456788899999999999999999999988876665566777889998865 44566676664 457777788877753
No 186
>PF14893 PNMA: PNMA
Probab=31.53 E-value=16 Score=34.80 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=21.5
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHH
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFE 44 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~ 44 (286)
...+.|.|.+||.+|++++|++.+.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHH
Confidence 4467899999999999999988874
No 187
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=30.45 E-value=2.3e+02 Score=20.98 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=43.9
Q ss_pred EEEEcCCCccCCHHHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCee
Q 023186 24 KVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR 92 (286)
Q Consensus 24 ~LfVgnLp~~vtee~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~ 92 (286)
.|+|.|-|.-. +.+-.+|++-| .|+++.+-...+.+.+ .+-++...+.+..+..++.+++.++=.+
T Consensus 6 si~v~n~pGVL--~Ri~~lf~rRgfNI~Sl~vg~te~~~~s-riti~~~~~~~~i~qi~kQL~KLidV~~ 72 (76)
T PRK06737 6 SLVIHNDPSVL--LRISGIFARRGYYISSLNLNERDTSGVS-EMKLTAVCTENEATLLVSQLKKLINVLQ 72 (76)
T ss_pred EEEEecCCCHH--HHHHHHHhccCcceEEEEecccCCCCee-EEEEEEECCHHHHHHHHHHHhCCcCEEE
Confidence 56777666543 45778898776 7777766433222333 3677777899999999998887655433
No 188
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=30.30 E-value=96 Score=26.06 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=43.1
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHH
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai 81 (286)
.+.-..+||.|.-+..--++.-+++|+.|- .|.+|.+.++....+-+....+...+..+.++++
T Consensus 83 ~~~~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~~ 147 (153)
T PF14401_consen 83 SERFELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQDF 147 (153)
T ss_pred CceEEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHHH
Confidence 344556788887765555666689999986 6788888776543455566667666665555543
No 189
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=30.27 E-value=91 Score=23.55 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=21.5
Q ss_pred CEEEEEEeecCCCCCcccEEEEEeCC
Q 023186 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (286)
Q Consensus 48 ~I~~v~i~~dk~tg~skGfgFV~F~~ 73 (286)
+|++|+|..-...++.|+||=|+|.|
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47888887766669999999999987
No 190
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=30.17 E-value=61 Score=24.18 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.7
Q ss_pred cccEEEEEeCCHHHHHHHHHhcCCc
Q 023186 63 SKGYGFVTFREPEAAMKACVDAAPV 87 (286)
Q Consensus 63 skGfgFV~F~~~e~A~~Ai~~l~~~ 87 (286)
.|||-|||=.+.+++.+||+.+.+.
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 6899999999999999999988654
No 191
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=30.07 E-value=52 Score=25.15 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=29.8
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHh-cCCEEEEEEeecCCCCCcccEEEEEeCC
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQ-FGEILEAVVITDKATGRSKGYGFVTFRE 73 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~-fG~I~~v~i~~dk~tg~skGfgFV~F~~ 73 (286)
-..-|||++++..+.|..-+.+-+. .++- ++.++... ....||.|-++.+
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~~--~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWSS--NTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEeC--CCCCCcEEEecCC
Confidence 3456999999998877644444444 2321 23333322 2345799988765
No 192
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=29.44 E-value=2.5e+02 Score=21.53 Aligned_cols=61 Identities=15% Similarity=0.222 Sum_probs=34.8
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHh-------c-CCEEEEEEeec-----CCCCCccc-EEEEEeCCHHHHHHHHHhc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQ-------F-GEILEAVVITD-----KATGRSKG-YGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~-------f-G~I~~v~i~~d-----k~tg~skG-fgFV~F~~~e~A~~Ai~~l 84 (286)
.-.+|| |.++++++++.++.++ . |+|.++.-.-. +..+..+| |.++.|.-..++.+.++..
T Consensus 8 YE~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~ 82 (97)
T CHL00123 8 YETMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKA 82 (97)
T ss_pred eeEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHH
Confidence 345666 5677777766655444 3 46666542111 12344566 5788898666666666653
No 193
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=28.21 E-value=2.1e+02 Score=20.31 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 023186 37 ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 37 e~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
++|++.+++.| +..+++. . + -.-++.|+.+++.+.++++++.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~s-G--s-G~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS-G--S-GGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE-T--T-SSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC-C--C-CCCCeEEEEECCHHHHHHHHHHH
Confidence 45677778888 4444442 1 1 11458888888999988888776
No 194
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=27.91 E-value=1.1e+02 Score=23.57 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=27.8
Q ss_pred EEEEcCCCccCCHHHHH---HHHHhcCCEEEEEEee----cCCCCCcccEEEEEe
Q 023186 24 KVFVGGLAWETQKETME---KYFEQFGEILEAVVIT----DKATGRSKGYGFVTF 71 (286)
Q Consensus 24 ~LfVgnLp~~vtee~L~---~~F~~fG~I~~v~i~~----dk~tg~skGfgFV~F 71 (286)
..|+.+||.++-+.++. +.|..+.. ++.|.. ......+.|++.+.+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~--~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGP--DVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCS--EEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCC--CeEEEEecccCccCCCCCceEEEEE
Confidence 45889999999987765 44444443 444443 344566777776544
No 195
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=27.47 E-value=2.1e+02 Score=19.63 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 023186 36 KETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (286)
Q Consensus 36 ee~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~ 85 (286)
-.+|-++|.+.| .|..+.+.... . ++.--+.+++.+.+.++|++.+
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~~G 61 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKEAG 61 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHHCC
Confidence 456778887776 77777654432 2 4566666788778888877654
No 196
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.22 E-value=2.8e+02 Score=23.49 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=39.6
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhc---CCEEEEEEeecCCC---------CCccc-EEEEEeCCHHHH
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQF---GEILEAVVITDKAT---------GRSKG-YGFVTFREPEAA 77 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~f---G~I~~v~i~~dk~t---------g~skG-fgFV~F~~~e~A 77 (286)
.+|++.-+...++|++.++..++= .++.+|.+-+.+++ ...+. |-.|.|++-+..
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 689999999999999999999764 56677766544321 12233 888999876553
No 197
>PRK10905 cell division protein DamX; Validated
Probab=26.87 E-value=70 Score=30.33 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=39.2
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEE--EEeCCHHHHHHHHHhcCCcc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGF--VTFREPEAAMKACVDAAPVI 88 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgF--V~F~~~e~A~~Ai~~l~~~i 88 (286)
...+|-|.-+ .+++.|++|-.+.+ +....+.....+|+.. |-. =.|.++++|++||+.|-..|
T Consensus 246 ~~YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 246 SHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred CceEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCCHHH
Confidence 3455555544 45688888888875 4444343333334322 332 27899999999999996544
No 198
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=25.91 E-value=2.4e+02 Score=19.80 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCC---HHHHHHHHHhcC
Q 023186 36 KETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFRE---PEAAMKACVDAA 85 (286)
Q Consensus 36 ee~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~---~e~A~~Ai~~l~ 85 (286)
-.++-+.|++++ .|.++.-...+. ....-.-||+++. .+..+++++.+.
T Consensus 13 L~~vL~~f~~~~vni~~I~Srp~~~-~~~~~~f~id~~~~~~~~~~~~~l~~l~ 65 (75)
T cd04880 13 LAKALKVFAERGINLTKIESRPSRK-GLWEYEFFVDFEGHIDDPDVKEALEELK 65 (75)
T ss_pred HHHHHHHHHHCCCCEEEEEeeecCC-CCceEEEEEEEECCCCCHHHHHHHHHHH
Confidence 456778888876 666664332221 2233456788873 566677777764
No 199
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=25.08 E-value=1e+02 Score=30.28 Aligned_cols=40 Identities=15% Similarity=0.369 Sum_probs=31.6
Q ss_pred CCCCCCccEEEEcCCCcc-CCHHHHHHHHHhc----CCEEEEEEe
Q 023186 16 QFGDTTYTKVFVGGLAWE-TQKETMEKYFEQF----GEILEAVVI 55 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~-vtee~L~~~F~~f----G~I~~v~i~ 55 (286)
+.+....++|-|-||.|+ +..++|..+|+.| |.|..|.|.
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 344567789999999997 7888999999876 677777764
No 200
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=24.94 E-value=2.8e+02 Score=20.27 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=34.3
Q ss_pred EEEcCCCccCCHHHHHHHH-------HhcCCEEEEEEeecCCCCC-ccc--EE-EEEeCCHHHHHHHH
Q 023186 25 VFVGGLAWETQKETMEKYF-------EQFGEILEAVVITDKATGR-SKG--YG-FVTFREPEAAMKAC 81 (286)
Q Consensus 25 LfVgnLp~~vtee~L~~~F-------~~fG~I~~v~i~~dk~tg~-skG--fg-FV~F~~~e~A~~Ai 81 (286)
|.+-.|..+++++++++++ .+...|+++.+-++..... .++ ++ +++|+|.++.+.-.
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 3344577788887775443 3456778887766543322 334 44 36899988765543
No 201
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=23.79 E-value=50 Score=23.75 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=15.7
Q ss_pred EEEEEeCCHHHHHHHHHhc
Q 023186 66 YGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 66 fgFV~F~~~e~A~~Ai~~l 84 (286)
.+|..|++.++|..++..+
T Consensus 46 ~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 46 KAFSPFKSAEEALENANAI 64 (67)
T ss_pred hhccCCCCHHHHHHHHHHh
Confidence 5899999999988877654
No 202
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=23.44 E-value=1.9e+02 Score=23.72 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=9.8
Q ss_pred CHHHHHHHHHhcCCccCCeeeEE
Q 023186 73 EPEAAMKACVDAAPVIDGRRANC 95 (286)
Q Consensus 73 ~~e~A~~Ai~~l~~~i~Gr~i~V 95 (286)
+-++.+.|...+. .+++..|.=
T Consensus 82 ~F~~~e~A~~Al~-~lng~~i~G 103 (144)
T PLN03134 82 NFNDEGAATAAIS-EMDGKELNG 103 (144)
T ss_pred EECCHHHHHHHHH-HcCCCEECC
Confidence 3344444444443 245554443
No 203
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=23.03 E-value=81 Score=22.72 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=23.8
Q ss_pred CHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEE
Q 023186 35 QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFV 69 (286)
Q Consensus 35 tee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV 69 (286)
-|.+|+++|-+--+|+++.|...|.- .+|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri--~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRI--RKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEee--eCCceeE
Confidence 35678888888889999988876643 3455555
No 204
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=22.80 E-value=2.2e+02 Score=24.90 Aligned_cols=51 Identities=16% Similarity=0.085 Sum_probs=33.8
Q ss_pred CCHHHHHHHHH-hcCCEEEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHhc
Q 023186 34 TQKETMEKYFE-QFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 34 vtee~L~~~F~-~fG~I~~v~i~~dk~t-g~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
.++++|.++.. .-|.+..|.+.+..+. ...+|--||+|...+.|.+.++..
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 45555555542 2267777766443321 256799999999999998877765
No 205
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=22.75 E-value=2.7e+02 Score=19.40 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=30.6
Q ss_pred HHHHHHHhcCCEEEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHh
Q 023186 38 TMEKYFEQFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACVD 83 (286)
Q Consensus 38 ~L~~~F~~fG~I~~v~i~~dk~t-g~skGfgFV~F~~~e~A~~Ai~~ 83 (286)
||++.+.++..|.++.++...+. ....-++||.. +.++..+.|+.
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~~~~i~~~~~~ 46 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-DEEEIRDHLRD 46 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-HHHHHHHHHHH
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-eecccccchhh
Confidence 57788889988999876544322 22567999988 55555555655
No 206
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=21.91 E-value=1.3e+02 Score=22.90 Aligned_cols=32 Identities=9% Similarity=0.240 Sum_probs=23.0
Q ss_pred EEEcCCCccCCHHHHHHHHHh-cC-CEEEEEEee
Q 023186 25 VFVGGLAWETQKETMEKYFEQ-FG-EILEAVVIT 56 (286)
Q Consensus 25 LfVgnLp~~vtee~L~~~F~~-fG-~I~~v~i~~ 56 (286)
.++-.++.+++..+|++.+++ |+ .|.+|..+.
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~ 55 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMN 55 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEE
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeE
Confidence 455567889999999999975 66 455665443
No 207
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=21.78 E-value=2.1e+02 Score=23.99 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=35.8
Q ss_pred EEEEcCCCccCCHHHHHHHHHh-cC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 023186 24 KVFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (286)
Q Consensus 24 ~LfVgnLp~~vtee~L~~~F~~-fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~ 82 (286)
+.||-.++...+..+|++.+++ |+ +|..|..+.-+. +.. =|||++....+|.+...
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~K--KA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GLK--KAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cce--EEEEEECCCCcHHHHHH
Confidence 3445557888999999999987 54 455555444332 222 48999977666554433
No 208
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.69 E-value=1.6e+02 Score=29.48 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=45.1
Q ss_pred cEEEEcCCCccCCH---HHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeee
Q 023186 23 TKVFVGGLAWETQK---ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (286)
Q Consensus 23 ~~LfVgnLp~~vte---e~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i 93 (286)
.-=+||||..-... ..|+++=++||.|-.+++-.. -.|.-.+.+.|++++.....++.+|..
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 33467888764443 455666679999998777332 358889999999999998777888764
No 209
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=21.24 E-value=1.5e+02 Score=22.98 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=20.4
Q ss_pred CEEEEEEeecCCCCCcccEEEEEeCC
Q 023186 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (286)
Q Consensus 48 ~I~~v~i~~dk~tg~skGfgFV~F~~ 73 (286)
+|++|+|..-...++-|+||=|+|.+
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47788776654558899999999987
No 210
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=21.18 E-value=2.7e+02 Score=21.60 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=32.5
Q ss_pred HHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCC
Q 023186 37 ETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG 90 (286)
Q Consensus 37 e~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~G 90 (286)
+++++.+++-| .++++.... +--.|+|++.++..+|-+.+...+..
T Consensus 49 ~~v~~~L~~~~I~~k~i~~~~--------~~llirf~~~~~Ql~Ak~~L~~~L~~ 95 (101)
T PF13721_consen 49 FQVEQALKAAGIAVKSIEQEG--------DSLLIRFDSTDQQLKAKDVLSKALGD 95 (101)
T ss_pred HHHHHHHHHCCCCcceEEeeC--------CEEEEEECCHHHHHHHHHHHHHHcCC
Confidence 57888888776 444444322 25789999999999998887655543
No 211
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=20.71 E-value=2.5e+02 Score=28.07 Aligned_cols=48 Identities=19% Similarity=0.065 Sum_probs=35.6
Q ss_pred HHHHHHHHH----hcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 023186 36 KETMEKYFE----QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 36 ee~L~~~F~----~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
.-+|..+|. .+|-|+++.+...+. .+.+...++.|.+.+++.+++..+
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~~ 254 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGDI 254 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHHH
Confidence 346777774 578888887766554 234557788999999999998875
No 212
>PLN02707 Soluble inorganic pyrophosphatase
Probab=20.31 E-value=61 Score=29.96 Aligned_cols=40 Identities=10% Similarity=0.281 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCEEEEEEeecCCCCCcccEEEE-EeCCHHHHHHHHHhcC
Q 023186 37 ETMEKYFEQFGEILEAVVITDKATGRSKGYGFV-TFREPEAAMKACVDAA 85 (286)
Q Consensus 37 e~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV-~F~~~e~A~~Ai~~l~ 85 (286)
++|+++|+.|=.. +- ...+-|+|+ .|.+.+.|++.|++..
T Consensus 208 ~~I~~fF~~YK~~-eG--------K~~n~~~~~~~~~~~~~A~~vI~e~~ 248 (267)
T PLN02707 208 TAIRDWFRDYKIP-DG--------KPANKFGLDNKPMDKDYALKVIEETN 248 (267)
T ss_pred HHHHHHHHHhcCC-CC--------CceeeccccCCcCCHHHHHHHHHHHH
Confidence 6788888887321 11 111236665 8999999999988763
No 213
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=20.08 E-value=2.2e+02 Score=21.70 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=23.5
Q ss_pred EEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCC----HHHHHHHHHhcCCc-cCCeeeEEE
Q 023186 25 VFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE----PEAAMKACVDAAPV-IDGRRANCN 96 (286)
Q Consensus 25 LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~----~e~A~~Ai~~l~~~-i~Gr~i~V~ 96 (286)
|-+++|.++-..+ ++-.+++-..|-++.|. |-.| -|||.|+. .+...++++.+..+ +.-+.|.|+
T Consensus 3 lkfg~It~eeA~~-~QYeLsk~~~vyRvFiN-----gYar-~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTve 72 (88)
T PF11491_consen 3 LKFGNITPEEAMV-KQYELSKNEAVYRVFIN-----GYAR-NGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVE 72 (88)
T ss_dssp EE--S-TTTTTHH-HHHTTTTTTTB-----------TTSS---EEE--B-S-SHHHH---HHHTTT-SS-------S
T ss_pred cccCCCCHHHHHH-HHHHhhcccceeeeeec-----cccc-ceEEEECcccCCHHHHHHHHHhcChhheeeccccHH
Confidence 4457776653322 22334555566666552 3333 68999974 57888888988754 777777764
Done!