Query 023186
Match_columns 286
No_of_seqs 348 out of 1908
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 17:46:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_Z 20 kDa nuclear CAP bind 99.9 7.6E-22 2.6E-26 164.2 13.0 84 19-102 36-120 (156)
2 4fxv_A ELAV-like protein 1; RN 99.9 8.3E-22 2.8E-26 152.9 11.3 80 21-100 18-98 (99)
3 2cqd_A RNA-binding region cont 99.9 2.6E-21 8.9E-26 153.2 14.3 88 14-101 9-96 (116)
4 3s8s_A Histone-lysine N-methyl 99.9 1.1E-21 3.8E-26 155.1 9.4 83 19-101 3-86 (110)
5 1u6f_A Tcubp1, RNA-binding pro 99.9 6.4E-21 2.2E-25 155.4 13.8 85 17-101 37-122 (139)
6 2cpz_A CUG triplet repeat RNA- 99.8 8.1E-21 2.8E-25 150.1 12.1 88 15-102 18-106 (115)
7 2dgo_A Cytotoxic granule-assoc 99.8 2.9E-20 1E-24 146.7 15.3 89 15-103 8-97 (115)
8 1whw_A Hypothetical protein ri 99.8 1.6E-20 5.4E-25 144.3 13.3 85 18-102 4-89 (99)
9 2dgs_A DAZ-associated protein 99.8 1.7E-20 5.9E-25 144.2 13.3 86 16-102 4-90 (99)
10 2fy1_A RNA-binding motif prote 99.8 2.2E-20 7.6E-25 148.6 13.6 84 18-102 3-87 (116)
11 2cq0_A Eukaryotic translation 99.8 1.3E-20 4.5E-25 145.9 11.9 86 16-101 9-95 (103)
12 1x4h_A RNA-binding protein 28; 99.8 1.8E-20 6.1E-25 146.7 12.3 87 16-102 9-102 (111)
13 3s7r_A Heterogeneous nuclear r 99.8 1.1E-20 3.8E-25 141.8 10.6 83 16-98 5-87 (87)
14 1x5s_A Cold-inducible RNA-bind 99.8 1.8E-20 6.3E-25 144.6 12.1 85 17-101 7-92 (102)
15 1x5u_A Splicing factor 3B subu 99.8 2.3E-20 7.9E-25 144.8 12.6 86 16-101 9-95 (105)
16 2dnz_A Probable RNA-binding pr 99.8 2.7E-20 9.2E-25 141.8 12.7 81 20-100 3-84 (95)
17 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.1E-20 3.6E-25 146.0 10.5 86 17-102 7-93 (102)
18 2lkz_A RNA-binding protein 5; 99.8 3E-21 1E-25 149.1 7.2 83 17-99 4-93 (95)
19 2lxi_A RNA-binding protein 10; 99.8 3.7E-21 1.3E-25 146.8 7.6 80 22-101 1-83 (91)
20 2khc_A Testis-specific RNP-typ 99.8 7.8E-21 2.7E-25 150.7 9.7 85 15-99 33-118 (118)
21 2dnm_A SRP46 splicing factor; 99.8 1.4E-20 4.9E-25 145.7 10.9 86 16-101 7-93 (103)
22 2dgp_A Bruno-like 4, RNA bindi 99.8 2.2E-20 7.6E-25 145.2 11.7 86 16-101 7-96 (106)
23 2cqg_A TDP-43, TAR DNA-binding 99.8 3.1E-20 1.1E-24 143.7 12.4 87 15-102 8-94 (103)
24 2cph_A RNA binding motif prote 99.8 3.3E-20 1.1E-24 144.3 12.2 88 15-102 8-98 (107)
25 2rs2_A Musashi-1, RNA-binding 99.8 1.5E-20 5.1E-25 147.9 10.2 87 17-103 20-106 (109)
26 2dhg_A TRNA selenocysteine ass 99.8 3.1E-20 1.1E-24 143.9 11.7 86 17-103 4-92 (104)
27 2dng_A Eukaryotic translation 99.8 4.6E-20 1.6E-24 143.0 12.6 85 15-101 8-93 (103)
28 1x5t_A Splicing factor 3B subu 99.8 2.5E-20 8.6E-25 142.2 11.0 82 20-101 3-86 (96)
29 1wi8_A EIF-4B, eukaryotic tran 99.8 3.5E-20 1.2E-24 143.9 11.8 86 14-101 7-94 (104)
30 2cqc_A Arginine/serine-rich sp 99.8 3.9E-20 1.3E-24 140.7 11.4 86 15-100 8-94 (95)
31 3ex7_B RNA-binding protein 8A; 99.8 2.8E-20 9.7E-25 149.1 11.2 88 16-103 16-104 (126)
32 2e5h_A Zinc finger CCHC-type a 99.8 3.7E-20 1.3E-24 140.7 10.7 84 16-99 10-94 (94)
33 2d9p_A Polyadenylate-binding p 99.8 5.3E-20 1.8E-24 142.4 11.8 87 14-102 7-94 (103)
34 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.2E-19 3.9E-24 140.5 13.6 86 15-102 8-94 (103)
35 2dh8_A DAZ-associated protein 99.8 2.5E-20 8.4E-25 144.8 9.7 87 15-101 9-95 (105)
36 2dnh_A Bruno-like 5, RNA bindi 99.8 7.9E-20 2.7E-24 141.8 12.5 86 17-103 10-99 (105)
37 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.2E-20 1.8E-24 137.8 11.0 81 20-100 4-85 (87)
38 2cpf_A RNA binding motif prote 99.8 5.2E-20 1.8E-24 141.1 11.2 82 20-101 3-88 (98)
39 3md1_A Nuclear and cytoplasmic 99.8 7.4E-20 2.5E-24 135.7 11.4 80 22-101 1-81 (83)
40 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.2E-20 1.8E-24 137.2 10.6 81 19-99 4-85 (85)
41 2do0_A HnRNP M, heterogeneous 99.8 2.4E-19 8.4E-24 141.0 14.7 85 16-101 9-94 (114)
42 1p27_B RNA-binding protein 8A; 99.8 8.5E-20 2.9E-24 141.9 11.7 86 16-101 17-103 (106)
43 2do4_A Squamous cell carcinoma 99.8 1.2E-19 3.9E-24 139.8 12.3 84 17-101 12-96 (100)
44 2m2b_A RNA-binding protein 10; 99.8 2E-20 6.7E-25 151.7 8.1 87 14-101 15-108 (131)
45 2cpe_A RNA-binding protein EWS 99.8 7E-20 2.4E-24 144.1 10.9 86 16-101 9-103 (113)
46 2div_A TRNA selenocysteine ass 99.8 9.8E-20 3.4E-24 139.8 11.4 83 18-100 5-93 (99)
47 3p5t_L Cleavage and polyadenyl 99.8 1.3E-20 4.6E-25 142.8 6.4 79 23-101 2-83 (90)
48 4f25_A Polyadenylate-binding p 99.8 7.3E-20 2.5E-24 145.2 10.8 79 22-102 5-84 (115)
49 2cq3_A RNA-binding protein 9; 99.8 2.6E-19 8.8E-24 138.5 13.6 86 15-102 8-94 (103)
50 2ywk_A Putative RNA-binding pr 99.8 8.7E-20 3E-24 138.9 10.6 84 15-99 9-93 (95)
51 2cq4_A RNA binding motif prote 99.8 1.3E-20 4.4E-25 148.7 6.2 86 17-103 20-106 (114)
52 1x4b_A Heterogeneous nuclear r 99.8 3.4E-20 1.2E-24 146.7 8.3 84 18-101 23-106 (116)
53 1oo0_B CG8781-PA, drosophila Y 99.8 1.4E-19 4.6E-24 141.8 11.4 87 16-102 20-107 (110)
54 3q2s_C Cleavage and polyadenyl 99.8 4E-20 1.4E-24 164.2 9.1 80 21-100 67-149 (229)
55 2x1f_A MRNA 3'-END-processing 99.8 1.5E-19 5.1E-24 138.3 11.0 80 22-101 2-82 (96)
56 2la6_A RNA-binding protein FUS 99.8 1.5E-19 5.2E-24 139.0 11.1 84 16-99 7-99 (99)
57 3ns6_A Eukaryotic translation 99.8 4E-20 1.4E-24 143.2 7.8 83 19-101 3-93 (100)
58 2jrs_A RNA-binding protein 39; 99.8 1.6E-19 5.3E-24 142.0 11.1 86 16-101 20-106 (108)
59 1x4a_A Splicing factor, argini 99.8 3.6E-19 1.2E-23 139.2 13.0 83 15-100 15-98 (109)
60 2cqp_A RNA-binding protein 12; 99.8 7.6E-20 2.6E-24 140.2 8.6 83 17-99 10-93 (98)
61 2kxn_B Transformer-2 protein h 99.8 1E-19 3.6E-24 147.6 9.6 86 16-101 40-126 (129)
62 3ucg_A Polyadenylate-binding p 99.8 1.2E-19 4E-24 136.4 9.0 80 20-100 4-84 (89)
63 4a8x_A RNA-binding protein wit 99.8 1.8E-19 6.1E-24 134.9 9.9 81 21-101 3-85 (88)
64 2ek1_A RNA-binding protein 12; 99.8 4.9E-20 1.7E-24 140.3 6.8 83 17-99 10-93 (95)
65 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4.6E-20 1.6E-24 135.0 6.3 76 23-98 1-76 (77)
66 2dis_A Unnamed protein product 99.8 4.8E-19 1.6E-23 138.2 12.2 85 19-103 5-94 (109)
67 3n9u_C Cleavage and polyadenyl 99.8 2.8E-19 9.6E-24 149.9 11.5 80 21-100 54-136 (156)
68 2dgv_A HnRNP M, heterogeneous 99.8 4.6E-19 1.6E-23 134.1 11.5 82 17-100 3-85 (92)
69 1p1t_A Cleavage stimulation fa 99.8 6.8E-20 2.3E-24 141.8 7.0 85 18-102 4-89 (104)
70 3ulh_A THO complex subunit 4; 99.8 4.5E-19 1.5E-23 138.0 11.6 83 16-99 23-106 (107)
71 1x4c_A Splicing factor, argini 99.8 1.1E-18 3.7E-23 136.7 13.7 78 16-100 9-92 (108)
72 1sjq_A Polypyrimidine tract-bi 99.8 2.4E-19 8.1E-24 141.1 9.9 79 18-102 12-93 (105)
73 1wez_A HnRNP H', FTP-3, hetero 99.8 2.1E-19 7.1E-24 140.0 9.5 82 16-99 9-90 (102)
74 2dgx_A KIAA0430 protein; RRM d 99.8 5.8E-19 2E-23 135.4 11.8 80 19-101 6-90 (96)
75 1wg5_A Heterogeneous nuclear r 99.8 4.4E-19 1.5E-23 138.1 10.9 83 17-100 10-93 (104)
76 2kn4_A Immunoglobulin G-bindin 99.8 6.3E-19 2.1E-23 146.4 12.6 84 18-101 66-150 (158)
77 2jwn_A Embryonic polyadenylate 99.8 4.8E-19 1.7E-23 141.5 11.3 79 21-100 35-114 (124)
78 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 4.4E-19 1.5E-23 143.9 11.0 83 16-98 57-140 (140)
79 2dgw_A Probable RNA-binding pr 99.8 8.9E-19 3E-23 132.5 11.8 82 17-101 5-87 (91)
80 1s79_A Lupus LA protein; RRM, 99.8 2.9E-19 9.9E-24 139.7 9.3 82 18-100 7-88 (103)
81 2dgu_A Heterogeneous nuclear r 99.8 1.7E-18 5.8E-23 134.2 13.6 81 17-105 6-87 (103)
82 2cpy_A RNA-binding protein 12; 99.8 6.2E-20 2.1E-24 145.3 5.2 84 18-102 11-95 (114)
83 2lea_A Serine/arginine-rich sp 99.8 2.2E-19 7.4E-24 146.8 8.2 86 16-101 41-127 (135)
84 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.4E-19 5E-24 139.8 6.7 83 17-101 14-98 (100)
85 1iqt_A AUF1, heterogeneous nuc 99.8 1.2E-19 4.1E-24 132.3 5.8 75 24-98 1-75 (75)
86 1x4e_A RNA binding motif, sing 99.8 9.8E-20 3.4E-24 136.0 5.4 79 20-98 3-82 (85)
87 2fc9_A NCL protein; structure 99.8 9.6E-19 3.3E-23 134.8 10.8 82 16-101 9-91 (101)
88 2err_A Ataxin-2-binding protei 99.8 4.9E-19 1.7E-23 139.1 9.3 84 15-100 22-106 (109)
89 2mss_A Protein (musashi1); RNA 99.8 2.1E-19 7.1E-24 131.1 6.6 74 24-98 1-75 (75)
90 2cq1_A PTB-like protein L; RRM 99.8 1.2E-18 4.1E-23 135.9 11.1 81 16-102 9-92 (101)
91 2kt5_A RNA and export factor-b 99.8 1.7E-18 5.8E-23 138.6 12.3 83 18-101 31-114 (124)
92 2fc8_A NCL protein; structure 99.8 1.1E-18 3.7E-23 134.7 10.6 81 17-100 10-91 (102)
93 2cpi_A CCR4-NOT transcription 99.8 7.9E-19 2.7E-23 138.3 9.6 85 17-101 10-101 (111)
94 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.5E-18 5E-23 145.9 11.8 88 16-103 66-154 (165)
95 1x4d_A Matrin 3; structural ge 99.8 8.8E-19 3E-23 137.1 9.7 78 17-100 10-91 (102)
96 1wex_A Hypothetical protein (r 99.8 2.1E-18 7E-23 135.2 11.5 80 16-101 9-91 (104)
97 2dnq_A RNA-binding protein 4B; 99.8 3E-18 1E-22 129.5 12.0 76 18-101 4-80 (90)
98 3pgw_S U1-70K; protein-RNA com 99.8 3.4E-18 1.2E-22 165.2 15.4 85 19-103 99-184 (437)
99 2cpx_A Hypothetical protein FL 99.8 4.3E-19 1.5E-23 139.8 7.5 86 17-102 20-106 (115)
100 2ki2_A SS-DNA binding protein 99.8 2.3E-19 7.7E-24 135.4 5.0 78 23-101 2-80 (90)
101 2hgm_A HNRPF protein, heteroge 99.8 5.8E-19 2E-23 143.2 7.6 82 17-100 37-120 (126)
102 2ad9_A Polypyrimidine tract-bi 99.8 2.7E-18 9.2E-23 138.0 11.2 81 17-103 26-109 (119)
103 2hgn_A Heterogeneous nuclear r 99.8 1.8E-19 6.1E-24 148.5 4.0 81 17-100 41-122 (139)
104 2dgt_A RNA-binding protein 30; 99.8 7.9E-18 2.7E-22 127.7 12.3 78 16-101 4-82 (92)
105 2db1_A Heterogeneous nuclear r 99.8 1.3E-18 4.5E-23 138.7 8.3 83 17-101 12-98 (118)
106 2jvo_A Nucleolar protein 3; nu 99.8 2.3E-18 7.8E-23 135.4 9.6 81 13-101 22-103 (108)
107 2lcw_A RNA-binding protein FUS 99.6 5E-20 1.7E-24 145.8 0.0 83 18-100 3-94 (116)
108 1x4g_A Nucleolysin TIAR; struc 99.8 6.2E-18 2.1E-22 132.3 11.9 79 18-102 21-100 (109)
109 2xs2_A Deleted in azoospermia- 99.8 1E-18 3.4E-23 135.0 7.3 84 17-102 4-87 (102)
110 1x5o_A RNA binding motif, sing 99.8 3.5E-18 1.2E-22 134.5 10.6 83 17-100 20-111 (114)
111 2hvz_A Splicing factor, argini 99.8 3.2E-18 1.1E-22 131.9 10.1 75 23-102 1-76 (101)
112 2dnn_A RNA-binding protein 12; 99.8 1.6E-18 5.4E-23 137.1 8.3 79 19-100 13-92 (109)
113 2ytc_A PRE-mRNA-splicing facto 99.8 5.3E-18 1.8E-22 126.3 10.7 79 15-99 5-85 (85)
114 1fj7_A Nucleolin RBD1, protein 99.8 3.6E-19 1.2E-23 137.3 4.2 81 19-101 14-95 (101)
115 1x4f_A Matrin 3; structural ge 99.8 2.2E-18 7.6E-23 137.0 8.9 78 17-100 20-101 (112)
116 2hgl_A HNRPF protein, heteroge 99.7 1.7E-18 5.9E-23 142.1 8.2 82 17-100 39-124 (136)
117 2cqh_A IGF-II mRNA-binding pro 99.7 3.4E-18 1.2E-22 129.8 9.2 77 18-101 4-83 (93)
118 1wel_A RNA-binding protein 12; 99.7 8.4E-19 2.9E-23 140.6 6.0 83 18-101 21-104 (124)
119 3r27_A HnRNP L, heterogeneous 99.7 5.3E-18 1.8E-22 132.2 10.1 78 17-100 16-96 (100)
120 2nlw_A Eukaryotic translation 99.7 3.8E-18 1.3E-22 133.0 9.3 81 18-100 11-99 (105)
121 2dnp_A RNA-binding protein 14; 99.7 1.2E-17 4E-22 126.2 11.5 77 17-101 4-81 (90)
122 2e5g_A U6 snRNA-specific termi 99.7 9.7E-18 3.3E-22 127.8 11.0 78 18-101 4-82 (94)
123 1l3k_A Heterogeneous nuclear r 99.7 6.3E-18 2.2E-22 143.5 10.9 86 19-104 101-186 (196)
124 2wbr_A GW182, gawky, LD47780P; 99.7 5E-18 1.7E-22 129.1 9.1 72 22-99 7-79 (89)
125 2la4_A Nuclear and cytoplasmic 99.7 2.5E-18 8.7E-23 132.5 7.6 77 18-100 23-100 (101)
126 2cpj_A Non-POU domain-containi 99.7 8.7E-18 3E-22 129.1 10.3 78 17-100 10-88 (99)
127 1l3k_A Heterogeneous nuclear r 99.7 9.3E-18 3.2E-22 142.4 11.5 86 16-101 7-92 (196)
128 1why_A Hypothetical protein ri 99.7 1.2E-17 4E-22 127.9 10.8 77 18-100 13-92 (97)
129 3beg_B Splicing factor, argini 99.7 1.6E-18 5.6E-23 137.5 6.2 76 18-100 12-93 (115)
130 4f02_A Polyadenylate-binding p 99.7 9.2E-18 3.1E-22 146.2 11.5 82 19-100 12-94 (213)
131 2jvr_A Nucleolar protein 3; RN 99.7 5.2E-18 1.8E-22 134.6 8.9 78 19-100 25-104 (111)
132 2e5j_A Methenyltetrahydrofolat 99.7 8E-18 2.7E-22 129.0 9.7 79 18-101 15-94 (97)
133 2cpd_A Apobec-1 stimulating pr 99.7 2.5E-17 8.6E-22 126.5 12.5 77 17-101 10-89 (99)
134 2krb_A Eukaryotic translation 99.7 3E-18 1E-22 127.2 6.6 72 22-95 1-80 (81)
135 2dha_A FLJ20171 protein; RRM d 99.7 2.7E-18 9.3E-23 138.6 6.8 81 19-100 20-104 (123)
136 2a3j_A U1 small nuclear ribonu 99.7 1.6E-17 5.5E-22 134.7 11.1 83 17-102 24-111 (127)
137 2lmi_A GRSF-1, G-rich sequence 99.7 2.4E-18 8.1E-23 134.6 5.9 82 17-100 6-91 (107)
138 1wf1_A RNA-binding protein RAL 99.7 1.7E-17 6E-22 129.9 10.9 74 19-100 24-99 (110)
139 2kvi_A Nuclear polyadenylated 99.7 8.2E-18 2.8E-22 128.8 8.6 76 18-101 6-83 (96)
140 2dnl_A Cytoplasmic polyadenyla 99.7 6.5E-18 2.2E-22 133.6 7.6 79 19-99 5-86 (114)
141 2xnq_A Nuclear polyadenylated 99.7 3.1E-17 1E-21 126.3 11.1 76 17-100 17-94 (97)
142 2f3j_A RNA and export factor b 99.7 1.7E-17 5.8E-22 141.6 10.6 83 18-101 84-167 (177)
143 1x5p_A Negative elongation fac 99.7 7.7E-17 2.6E-21 123.5 12.7 77 17-101 10-87 (97)
144 1fjc_A Nucleolin RBD2, protein 99.7 1.1E-17 3.7E-22 127.6 7.8 79 17-100 11-90 (96)
145 2j8a_A Histone-lysine N-methyl 99.7 1.4E-17 4.7E-22 135.1 8.1 79 22-100 2-95 (136)
146 1nu4_A U1A RNA binding domain; 99.7 1.2E-17 4.2E-22 127.4 7.5 81 18-101 4-89 (97)
147 3lqv_A PRE-mRNA branch site pr 99.7 3.1E-17 1.1E-21 129.2 9.9 81 19-102 5-86 (115)
148 1fxl_A Paraneoplastic encephal 99.7 5.9E-17 2E-21 133.4 11.8 80 22-101 2-82 (167)
149 1b7f_A Protein (SXL-lethal pro 99.7 5.5E-17 1.9E-21 134.1 11.2 81 21-101 2-83 (168)
150 3d2w_A TAR DNA-binding protein 99.7 2.4E-17 8.1E-22 125.1 8.0 78 18-101 7-84 (89)
151 1whx_A Hypothetical protein ri 99.7 3.1E-17 1.1E-21 129.4 9.0 78 19-102 7-85 (111)
152 2i2y_A Fusion protein consists 99.7 4.3E-17 1.5E-21 134.5 10.3 79 17-100 68-147 (150)
153 3md3_A Nuclear and cytoplasmic 99.7 9.3E-17 3.2E-21 132.1 12.3 83 17-99 82-165 (166)
154 2e44_A Insulin-like growth fac 99.7 4.3E-17 1.5E-21 124.2 9.5 80 18-101 11-92 (96)
155 2qfj_A FBP-interacting repress 99.7 7.5E-17 2.6E-21 138.8 12.0 82 20-101 123-205 (216)
156 1wf0_A TDP-43, TAR DNA-binding 99.7 1.2E-17 4E-22 125.7 6.1 76 20-101 3-78 (88)
157 1sjr_A Polypyrimidine tract-bi 99.7 1.2E-16 4.2E-21 134.9 12.9 82 17-102 41-125 (164)
158 2yh0_A Splicing factor U2AF 65 99.7 1.1E-16 3.8E-21 135.9 11.7 83 19-101 111-194 (198)
159 1wg1_A KIAA1579 protein, homol 99.7 4.5E-17 1.5E-21 122.7 8.1 74 20-100 3-77 (88)
160 3egn_A RNA-binding protein 40; 99.7 1.1E-17 3.8E-22 137.0 4.7 87 18-104 41-133 (143)
161 2g4b_A Splicing factor U2AF 65 99.7 1.5E-16 5.2E-21 132.1 10.7 80 20-99 92-172 (172)
162 2cq2_A Hypothetical protein LO 99.7 2.1E-16 7E-21 126.0 10.0 77 18-100 21-105 (114)
163 2cjk_A Nuclear polyadenylated 99.7 9E-17 3.1E-21 132.9 8.2 79 21-100 2-80 (167)
164 2voo_A Lupus LA protein; RNA-b 99.7 2.6E-16 9E-21 136.0 10.8 81 21-102 108-188 (193)
165 2qfj_A FBP-interacting repress 99.7 1.9E-16 6.6E-21 136.2 9.9 81 20-100 26-107 (216)
166 2cjk_A Nuclear polyadenylated 99.7 8.4E-17 2.9E-21 133.1 7.3 80 21-101 86-166 (167)
167 4f02_A Polyadenylate-binding p 99.7 1.4E-16 4.7E-21 138.7 9.0 80 21-102 102-182 (213)
168 3md3_A Nuclear and cytoplasmic 99.7 4.4E-16 1.5E-20 128.0 10.6 78 23-101 1-79 (166)
169 2hzc_A Splicing factor U2AF 65 99.7 4.3E-16 1.5E-20 116.3 9.4 72 19-97 3-86 (87)
170 1b7f_A Protein (SXL-lethal pro 99.7 7E-16 2.4E-20 127.4 11.4 81 18-98 85-168 (168)
171 3zzy_A Polypyrimidine tract-bi 99.6 1.2E-15 3.9E-20 124.3 11.9 80 17-101 23-106 (130)
172 2bz2_A Negative elongation fac 99.6 5.6E-16 1.9E-20 124.3 9.1 76 18-101 35-111 (121)
173 3nmr_A Cugbp ELAV-like family 99.6 9.3E-16 3.2E-20 127.3 10.7 80 21-100 2-87 (175)
174 1fxl_A Paraneoplastic encephal 99.6 1.2E-15 4.1E-20 125.5 11.1 80 19-98 85-167 (167)
175 2e5i_A Heterogeneous nuclear r 99.6 2.2E-15 7.5E-20 121.7 11.2 76 20-101 23-102 (124)
176 3nmr_A Cugbp ELAV-like family 99.6 2.1E-15 7.3E-20 125.1 10.9 79 19-98 92-174 (175)
177 3pgw_A U1-A; protein-RNA compl 99.6 1.9E-15 6.4E-20 136.0 11.3 82 18-102 5-91 (282)
178 3tyt_A Heterogeneous nuclear r 99.6 2.1E-15 7.3E-20 131.3 10.7 76 21-101 3-80 (205)
179 2diu_A KIAA0430 protein; struc 99.6 4E-15 1.4E-19 114.3 10.7 72 22-103 8-86 (96)
180 2pe8_A Splicing factor 45; RRM 99.6 4.4E-15 1.5E-19 116.4 11.0 82 19-100 5-93 (105)
181 1fje_B Nucleolin RBD12, protei 99.6 4.4E-15 1.5E-19 124.0 9.7 78 18-100 95-173 (175)
182 3u1l_A PRE-mRNA-splicing facto 99.6 5E-15 1.7E-19 132.3 9.3 77 19-101 131-229 (240)
183 2adc_A Polypyrimidine tract-bi 99.6 1.1E-14 3.7E-19 128.0 10.8 78 19-101 31-110 (229)
184 3smz_A Protein raver-1, ribonu 99.6 2E-14 6.7E-19 129.4 12.7 81 21-101 94-175 (284)
185 3pgw_A U1-A; protein-RNA compl 99.6 1.4E-14 4.9E-19 130.2 11.5 77 18-99 203-281 (282)
186 2dit_A HIV TAT specific factor 99.6 3.2E-14 1.1E-18 112.0 12.1 81 17-101 10-102 (112)
187 1fje_B Nucleolin RBD12, protei 99.6 1.5E-15 5.2E-20 126.8 4.1 82 18-101 9-91 (175)
188 2ghp_A U4/U6 snRNA-associated 99.6 9.4E-15 3.2E-19 132.1 9.5 81 19-100 207-290 (292)
189 3smz_A Protein raver-1, ribonu 99.5 1.4E-14 4.8E-19 130.4 9.9 84 18-102 180-265 (284)
190 1qm9_A Polypyrimidine tract-bi 99.5 1.4E-14 4.9E-19 123.5 8.1 75 22-101 3-79 (198)
191 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.9E-13 6.6E-18 106.2 13.0 77 19-101 7-90 (100)
192 3v4m_A Splicing factor U2AF 65 99.5 5.3E-14 1.8E-18 110.1 9.4 82 19-100 2-96 (105)
193 3sde_A Paraspeckle component 1 99.5 5.1E-14 1.8E-18 126.1 10.3 81 21-102 95-180 (261)
194 1jmt_A Splicing factor U2AF 35 99.5 2.2E-14 7.4E-19 112.1 5.6 71 27-98 20-103 (104)
195 3tyt_A Heterogeneous nuclear r 99.5 3.8E-14 1.3E-18 123.3 7.7 76 21-98 122-204 (205)
196 3ue2_A Poly(U)-binding-splicin 99.5 1E-13 3.5E-18 110.9 9.1 80 21-100 19-108 (118)
197 2ghp_A U4/U6 snRNA-associated 99.5 7.3E-14 2.5E-18 126.2 9.1 81 21-102 116-198 (292)
198 2g4b_A Splicing factor U2AF 65 99.5 1.6E-13 5.5E-18 113.7 10.2 73 21-100 3-87 (172)
199 1qm9_A Polypyrimidine tract-bi 99.5 8.4E-14 2.9E-18 118.7 8.6 76 20-100 118-196 (198)
200 3sde_A Paraspeckle component 1 99.5 1.2E-13 4.1E-18 123.7 10.0 76 18-99 18-94 (261)
201 2adc_A Polypyrimidine tract-bi 99.5 1.4E-13 4.9E-18 120.8 10.1 75 21-100 150-227 (229)
202 2yh0_A Splicing factor U2AF 65 99.5 1.7E-13 5.9E-18 116.1 9.5 74 21-101 3-88 (198)
203 3tht_A Alkylated DNA repair pr 99.3 2.1E-12 7.2E-17 121.0 9.4 75 18-98 14-96 (345)
204 3s6e_A RNA-binding protein 39; 99.2 2.3E-11 7.9E-16 96.6 8.6 75 21-99 6-91 (114)
205 1owx_A Lupus LA protein, SS-B, 99.2 7.8E-11 2.7E-15 94.5 9.0 77 17-99 13-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 2.1E-10 7.3E-15 87.2 8.5 74 21-103 6-88 (91)
207 1ufw_A Synaptojanin 2; RNP dom 98.9 1E-09 3.5E-14 83.9 5.3 72 20-100 13-94 (95)
208 3dxb_A Thioredoxin N-terminall 98.9 3E-09 1E-13 92.6 8.5 66 34-99 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.4 2.1E-06 7.3E-11 67.1 9.3 75 18-98 17-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.1 2.5E-05 8.5E-10 60.4 10.8 74 18-99 4-82 (104)
211 1wey_A Calcipressin 1; structu 97.6 0.00024 8.2E-09 55.0 8.2 75 20-100 3-83 (104)
212 1whv_A Poly(A)-specific ribonu 97.5 0.00022 7.6E-09 54.5 6.4 55 21-84 15-69 (100)
213 1wwh_A Nucleoporin 35, nucleop 97.3 0.0012 4E-08 52.4 9.2 74 18-98 20-94 (119)
214 3ctr_A Poly(A)-specific ribonu 97.1 0.00042 1.4E-08 53.1 4.5 53 23-84 7-59 (101)
215 1uw4_A UPF3X; nonsense mediate 96.8 0.0045 1.6E-07 46.7 7.6 63 23-85 2-66 (91)
216 3p3d_A Nucleoporin 53; structu 96.4 0.0043 1.5E-07 49.8 5.4 77 22-99 7-97 (132)
217 3pq1_A Poly(A) RNA polymerase; 96.2 0.0023 7.8E-08 61.9 3.1 57 22-84 53-109 (464)
218 2kn4_A Immunoglobulin G-bindin 95.8 0.0063 2.2E-07 49.2 3.8 33 51-85 2-34 (158)
219 2l08_A Regulator of nonsense t 94.6 0.028 9.5E-07 42.8 3.8 66 21-86 8-75 (97)
220 2i2y_A Fusion protein consists 93.6 0.041 1.4E-06 44.0 3.2 40 60-100 9-50 (150)
221 3d45_A Poly(A)-specific ribonu 91.7 0.33 1.1E-05 47.3 7.2 56 21-85 439-494 (507)
222 3lpe_A Putative transcription 68.2 13 0.00044 27.3 6.1 62 16-86 6-72 (92)
223 2g0c_A ATP-dependent RNA helic 62.2 20 0.00067 24.8 5.9 67 24-99 2-75 (76)
224 4eyt_A Telomerase associated p 60.9 49 0.0017 24.6 8.7 71 20-98 10-88 (129)
225 4f25_A Polyadenylate-binding p 60.4 1.8 6.2E-05 32.7 0.0 19 20-38 95-113 (115)
226 2cu1_A Mitogen-activated prote 55.4 29 0.00098 26.2 5.8 62 30-99 24-86 (103)
227 3fry_A Probable copper-exporti 52.0 32 0.0011 22.9 5.5 58 21-85 5-62 (73)
228 4e8u_A Putative uncharacterize 45.0 52 0.0018 27.2 6.5 58 24-84 14-83 (172)
229 3bb5_A Stress responsive alpha 36.8 1.3E+02 0.0046 22.6 7.8 62 21-82 20-92 (121)
230 2qyc_A Ferredoxin-like protein 36.4 1.2E+02 0.004 22.0 6.8 54 25-79 8-71 (103)
231 2lfv_A Protein DAMX; cell divi 39.7 8.9 0.0003 29.2 0.0 55 33-89 33-89 (106)
232 3h7h_B Transcription elongatio 32.7 81 0.0028 23.7 5.4 35 48-87 40-74 (106)
233 3bgu_A Ferredoxin-like protein 32.4 1.3E+02 0.0043 22.6 6.6 60 21-81 21-90 (116)
234 2i9x_A Putative septation prot 30.2 62 0.0021 23.6 4.1 26 48-73 5-30 (87)
235 1q4r_A Protein AT3G17210; cent 28.7 1.6E+02 0.0053 21.7 6.5 61 22-82 11-82 (112)
236 1tr0_A Stable protein 1; plant 28.6 1.4E+02 0.0049 21.7 6.2 59 22-80 9-80 (108)
237 1q8l_A Copper-transporting ATP 27.7 1.4E+02 0.0047 19.9 8.5 60 20-85 8-71 (84)
238 2jrh_A Mitogen-activated prote 26.5 1.6E+02 0.0055 21.6 5.8 61 30-98 20-81 (94)
239 2npt_B Mitogen-activated prote 26.3 1.9E+02 0.0063 21.6 6.1 59 30-96 36-95 (100)
240 3dxs_X Copper-transporting ATP 26.2 1.3E+02 0.0046 19.3 6.8 57 23-85 4-64 (74)
241 2ia9_A Putative septation prot 25.6 81 0.0028 23.6 4.1 26 48-73 5-30 (100)
242 1kvi_A Copper-transporting ATP 25.4 1.4E+02 0.0048 19.2 7.8 61 19-85 6-70 (79)
243 2i9z_A Putative septation prot 24.8 86 0.0029 23.7 4.2 26 48-73 5-30 (105)
244 3ts2_A Protein LIN-28 homolog 24.6 11 0.00037 30.4 -1.0 28 37-72 2-29 (148)
245 4bby_A Alkyldihydroxyacetoneph 24.2 59 0.002 32.1 4.1 54 30-84 351-408 (658)
246 3fut_A Dimethyladenosine trans 23.4 47 0.0016 29.1 2.9 34 22-56 110-143 (271)
247 1fme_A FSD-EY peptide; beta-BE 23.1 47 0.0016 18.5 1.8 13 34-46 13-25 (28)
248 2g9o_A Copper-transporting ATP 22.7 1.9E+02 0.0064 19.8 5.6 56 23-84 5-64 (90)
249 2v94_A RPS24, 30S ribosomal pr 22.7 51 0.0017 25.0 2.6 47 32-79 37-88 (107)
250 3bde_A MLL5499 protein; stress 22.4 2.5E+02 0.0086 21.1 6.7 58 22-79 21-86 (120)
251 1vq8_S 50S ribosomal protein L 21.7 1.5E+02 0.0052 21.3 4.9 53 25-80 24-78 (85)
252 3mfb_A Uncharacterized protein 21.7 1.3E+02 0.0043 24.4 4.9 37 34-70 3-42 (157)
253 3lo3_A Uncharacterized conserv 21.7 1.4E+02 0.0047 21.5 4.8 45 39-84 26-73 (94)
254 2exu_A Transcription initiatio 21.5 1.2E+02 0.0041 25.5 4.9 26 63-88 148-173 (200)
255 3uzu_A Ribosomal RNA small sub 21.4 32 0.0011 30.2 1.4 35 23-57 115-149 (279)
256 1yg0_A COP associated protein; 21.1 1.5E+02 0.0051 18.0 6.4 56 24-85 4-62 (66)
257 1aw0_A Menkes copper-transport 20.8 1.6E+02 0.0055 18.3 5.1 57 23-85 5-65 (72)
258 2c60_A Human mitogen-activated 20.1 1.7E+02 0.0058 22.1 4.9 60 30-97 47-107 (111)
No 1
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.87 E-value=7.6e-22 Score=164.23 Aligned_cols=84 Identities=20% Similarity=0.251 Sum_probs=78.4
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~ 97 (286)
..+.++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.|+ .+|+|++|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3467999999999999999999999999999999999999999999999999999999999999987 569999999999
Q ss_pred cccCC
Q 023186 98 ACLGV 102 (286)
Q Consensus 98 a~~~~ 102 (286)
++...
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 97543
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=8.3e-22 Score=152.89 Aligned_cols=80 Identities=25% Similarity=0.378 Sum_probs=76.0
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~ 99 (286)
+.++|||+|||+++||++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.++ ..|+|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 46799999999999999999999999999999999999999999999999999999999999997 56999999999996
Q ss_pred c
Q 023186 100 L 100 (286)
Q Consensus 100 ~ 100 (286)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 3
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.6e-21 Score=153.15 Aligned_cols=88 Identities=59% Similarity=1.008 Sum_probs=82.3
Q ss_pred CCCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeee
Q 023186 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (286)
Q Consensus 14 ~~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i 93 (286)
.....+.+.++|||+|||++++|++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++.+|+|++|
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 88 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA 88 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEE
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEEEcccC
Q 023186 94 NCNLACLG 101 (286)
Q Consensus 94 ~V~~a~~~ 101 (286)
+|++++..
T Consensus 89 ~V~~a~~~ 96 (116)
T 2cqd_A 89 NVNLAYLG 96 (116)
T ss_dssp EEEESTTT
T ss_pred EEEEcccC
Confidence 99999643
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=155.15 Aligned_cols=83 Identities=16% Similarity=0.227 Sum_probs=77.8
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~ 97 (286)
+.+.++|||+||+++++|++|+++|++||+|++|+|++|+.|+++||||||+|++.++|++||+.+|. .|+|++|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999974 59999999999
Q ss_pred cccC
Q 023186 98 ACLG 101 (286)
Q Consensus 98 a~~~ 101 (286)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 9543
No 5
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=6.4e-21 Score=155.39 Aligned_cols=85 Identities=25% Similarity=0.411 Sum_probs=79.2
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V 95 (286)
.++...++|||+||+++++|++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++. .|+|++|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 4556789999999999999999999999999999999999999999999999999999999999999975 599999999
Q ss_pred EEcccC
Q 023186 96 NLACLG 101 (286)
Q Consensus 96 ~~a~~~ 101 (286)
++++.+
T Consensus 117 ~~a~~~ 122 (139)
T 1u6f_A 117 ALAASG 122 (139)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 999654
No 6
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=8.1e-21 Score=150.07 Aligned_cols=88 Identities=26% Similarity=0.322 Sum_probs=80.5
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeee
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i 93 (286)
....+...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456677999999999999999999999999999999999999999999999999999999999999997 46999999
Q ss_pred EEEEcccCC
Q 023186 94 NCNLACLGV 102 (286)
Q Consensus 94 ~V~~a~~~~ 102 (286)
+|++++.+.
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 999996543
No 7
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=2.9e-20 Score=146.69 Aligned_cols=89 Identities=35% Similarity=0.469 Sum_probs=81.5
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeee
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i 93 (286)
...+..+.++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999997 45999999
Q ss_pred EEEEcccCCC
Q 023186 94 NCNLACLGVQ 103 (286)
Q Consensus 94 ~V~~a~~~~~ 103 (286)
+|++++....
T Consensus 88 ~V~~a~~~~~ 97 (115)
T 2dgo_A 88 RTNWATRKPP 97 (115)
T ss_dssp EEEESSCCCC
T ss_pred EEEEccCCCC
Confidence 9999975543
No 8
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.6e-20 Score=144.28 Aligned_cols=85 Identities=31% Similarity=0.501 Sum_probs=79.1
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~ 96 (286)
+..+.++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++. .|+|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999999975 5999999999
Q ss_pred EcccCC
Q 023186 97 LACLGV 102 (286)
Q Consensus 97 ~a~~~~ 102 (286)
+++.+.
T Consensus 84 ~a~~~~ 89 (99)
T 1whw_A 84 PSTIKK 89 (99)
T ss_dssp ECCCCS
T ss_pred EcCCCc
Confidence 996543
No 9
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=144.21 Aligned_cols=86 Identities=27% Similarity=0.502 Sum_probs=79.0
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
..++.+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+ ++ ..|+|++|+
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 3456778999999999999999999999999999999999999999999999999999999999999 65 569999999
Q ss_pred EEEcccCC
Q 023186 95 CNLACLGV 102 (286)
Q Consensus 95 V~~a~~~~ 102 (286)
|++++.+.
T Consensus 83 V~~a~~~~ 90 (99)
T 2dgs_A 83 VKRAEPRD 90 (99)
T ss_dssp EEECCCCC
T ss_pred EEECCCCc
Confidence 99996543
No 10
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=148.64 Aligned_cols=84 Identities=30% Similarity=0.526 Sum_probs=77.9
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
++...++|||+|||+++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999999998 89999999999999999999999997 56999999999
Q ss_pred EcccCC
Q 023186 97 LACLGV 102 (286)
Q Consensus 97 ~a~~~~ 102 (286)
+++...
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 996543
No 11
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=145.87 Aligned_cols=86 Identities=26% Similarity=0.358 Sum_probs=80.1
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
..+....++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4456778999999999999999999999999999999999999999999999999999999999999997 469999999
Q ss_pred EEEcccC
Q 023186 95 CNLACLG 101 (286)
Q Consensus 95 V~~a~~~ 101 (286)
|++++.+
T Consensus 89 v~~a~~~ 95 (103)
T 2cq0_A 89 VEWAKPS 95 (103)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 9999654
No 12
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=146.71 Aligned_cols=87 Identities=29% Similarity=0.425 Sum_probs=80.3
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC------C-cc
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA------P-VI 88 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~------~-~i 88 (286)
+......++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ . .|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 4456678999999999999999999999999999999999999999999999999999999999999997 5 49
Q ss_pred CCeeeEEEEcccCC
Q 023186 89 DGRRANCNLACLGV 102 (286)
Q Consensus 89 ~Gr~i~V~~a~~~~ 102 (286)
+|++|+|++++.+.
T Consensus 89 ~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 89 DGRQLKVDLAVTRD 102 (111)
T ss_dssp SSCEEEEECCCCCC
T ss_pred cCEEEEEEECCCCc
Confidence 99999999996543
No 13
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=1.1e-20 Score=141.79 Aligned_cols=83 Identities=34% Similarity=0.701 Sum_probs=76.9
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V 95 (286)
+.++.+.++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++.+|+|++|+|
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 34567889999999999999999999999999999999999999999999999999999999999988777799999999
Q ss_pred EEc
Q 023186 96 NLA 98 (286)
Q Consensus 96 ~~a 98 (286)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 14
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=144.65 Aligned_cols=85 Identities=35% Similarity=0.627 Sum_probs=78.9
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
....+.++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999987 5699999999
Q ss_pred EEcccC
Q 023186 96 NLACLG 101 (286)
Q Consensus 96 ~~a~~~ 101 (286)
++++..
T Consensus 87 ~~a~~~ 92 (102)
T 1x5s_A 87 DQAGKS 92 (102)
T ss_dssp EEEECC
T ss_pred EECCCC
Confidence 999654
No 15
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=144.84 Aligned_cols=86 Identities=27% Similarity=0.341 Sum_probs=80.0
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
+.+....++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4456778999999999999999999999999999999999999999999999999999999999999987 569999999
Q ss_pred EEEcccC
Q 023186 95 CNLACLG 101 (286)
Q Consensus 95 V~~a~~~ 101 (286)
|++++..
T Consensus 89 v~~a~~~ 95 (105)
T 1x5u_A 89 VNKASAH 95 (105)
T ss_dssp EEETTTT
T ss_pred EEECCCC
Confidence 9999653
No 16
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=141.75 Aligned_cols=81 Identities=32% Similarity=0.562 Sum_probs=76.5
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a 98 (286)
...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 457899999999999999999999999999999999999999999999999999999999999987 5699999999999
Q ss_pred cc
Q 023186 99 CL 100 (286)
Q Consensus 99 ~~ 100 (286)
+.
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 17
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=146.03 Aligned_cols=86 Identities=30% Similarity=0.367 Sum_probs=79.4
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V 95 (286)
....+.++|||+|||+++++++|+++|++||+|++|+|+.|+.+++++|||||+|.+.++|++||+.++. .|+|++|+|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999875 599999999
Q ss_pred EEcccCC
Q 023186 96 NLACLGV 102 (286)
Q Consensus 96 ~~a~~~~ 102 (286)
++++...
T Consensus 87 ~~a~~~~ 93 (102)
T 2cqb_A 87 NLAKPMR 93 (102)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9996543
No 18
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=3e-21 Score=149.08 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=76.3
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCC--EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-----ccC
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE--ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-----VID 89 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~--I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-----~i~ 89 (286)
..+....+|||+|||+++||++|+++|++||. |.+|+|++|+.|+++||||||+|.+.++|++||+.++. .|+
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 34567889999999999999999999999995 67999999999999999999999999999999999863 399
Q ss_pred CeeeEEEEcc
Q 023186 90 GRRANCNLAC 99 (286)
Q Consensus 90 Gr~i~V~~a~ 99 (286)
||+|+|++|+
T Consensus 84 Gr~i~V~~Ak 93 (95)
T 2lkz_A 84 GKTIGVDFAK 93 (95)
T ss_dssp TEEEEEEECC
T ss_pred CEEEEEEEcc
Confidence 9999999995
No 19
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=3.7e-21 Score=146.82 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=74.5
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-C-ccCCeeeEEEEc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P-VIDGRRANCNLA 98 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~-~i~Gr~i~V~~a 98 (286)
+++|||+|||+++||++|+++|++|| +|++|+|++|+.|+++||||||+|.+.++|++||+.++ . .|+|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999874 3 499999999999
Q ss_pred ccC
Q 023186 99 CLG 101 (286)
Q Consensus 99 ~~~ 101 (286)
.++
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 654
No 20
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=7.8e-21 Score=150.67 Aligned_cols=85 Identities=27% Similarity=0.377 Sum_probs=78.4
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeee
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i 93 (286)
...++.+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ .+|+|++|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999999997 45999999
Q ss_pred EEEEcc
Q 023186 94 NCNLAC 99 (286)
Q Consensus 94 ~V~~a~ 99 (286)
+|++++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999874
No 21
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=145.69 Aligned_cols=86 Identities=21% Similarity=0.394 Sum_probs=79.7
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
+.+....++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3456678999999999999999999999999999999999999999999999999999999999999987 569999999
Q ss_pred EEEcccC
Q 023186 95 CNLACLG 101 (286)
Q Consensus 95 V~~a~~~ 101 (286)
|++++..
T Consensus 87 V~~a~~~ 93 (103)
T 2dnm_A 87 VQVARYG 93 (103)
T ss_dssp EEECSSC
T ss_pred EEECCcC
Confidence 9999653
No 22
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=2.2e-20 Score=145.16 Aligned_cols=86 Identities=29% Similarity=0.432 Sum_probs=79.3
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-cc---CCe
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI---DGR 91 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i---~Gr 91 (286)
...+.+.++|||+|||+++++++|+++|++||+|++|+|+.|+.+++++|||||+|.+.++|++||+.++. .+ +++
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 45667889999999999999999999999999999999999999999999999999999999999999974 45 889
Q ss_pred eeEEEEcccC
Q 023186 92 RANCNLACLG 101 (286)
Q Consensus 92 ~i~V~~a~~~ 101 (286)
+|+|++++..
T Consensus 87 ~l~v~~a~~~ 96 (106)
T 2dgp_A 87 PIQVKPADSE 96 (106)
T ss_dssp CCEEEECCCC
T ss_pred eEEEEECCcc
Confidence 9999999653
No 23
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.1e-20 Score=143.75 Aligned_cols=87 Identities=36% Similarity=0.617 Sum_probs=79.4
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeE
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~ 94 (286)
.+..+.+.++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+. .+.|+|++|+
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~ 86 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCD 86 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEE
Confidence 345667789999999999999999999999999999999999999999999999999999999999995 4579999999
Q ss_pred EEEcccCC
Q 023186 95 CNLACLGV 102 (286)
Q Consensus 95 V~~a~~~~ 102 (286)
|+++..+.
T Consensus 87 v~~a~~~~ 94 (103)
T 2cqg_A 87 CKLPNSKQ 94 (103)
T ss_dssp EECCCTTC
T ss_pred EEecCCCC
Confidence 99996543
No 24
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=144.28 Aligned_cols=88 Identities=25% Similarity=0.383 Sum_probs=80.6
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeec-CCCCCcccEEEEEeCCHHHHHHHHHhc-C-CccCCe
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD-KATGRSKGYGFVTFREPEAAMKACVDA-A-PVIDGR 91 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~d-k~tg~skGfgFV~F~~~e~A~~Ai~~l-~-~~i~Gr 91 (286)
.+..+...++|||+|||+++++++|+++|++||+|++|+|+.+ +.+++++|||||+|.+.++|++||+.+ + ..|+|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3456678899999999999999999999999999999999999 789999999999999999999999998 6 569999
Q ss_pred eeEEEEcccCC
Q 023186 92 RANCNLACLGV 102 (286)
Q Consensus 92 ~i~V~~a~~~~ 102 (286)
+|+|++++.+.
T Consensus 88 ~l~v~~a~~~~ 98 (107)
T 2cph_A 88 RLVLEWADSEV 98 (107)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEeCCCCC
Confidence 99999996543
No 25
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=1.5e-20 Score=147.93 Aligned_cols=87 Identities=33% Similarity=0.612 Sum_probs=77.0
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~ 96 (286)
.++...++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++..|+|++|+|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999877999999999
Q ss_pred EcccCCC
Q 023186 97 LACLGVQ 103 (286)
Q Consensus 97 ~a~~~~~ 103 (286)
++..+..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9975543
No 26
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=143.86 Aligned_cols=86 Identities=23% Similarity=0.381 Sum_probs=78.7
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHh-cCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-Cc-cCCeee
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQ-FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PV-IDGRRA 93 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~-fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~-i~Gr~i 93 (286)
.+....++|||+|||+++++++|+++|++ ||+|++|+|+.|+ +++++|||||+|.+.++|++||+.++ .. |+|++|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34567899999999999999999999999 9999999999998 99999999999999999999999997 57 999999
Q ss_pred EEEEcccCCC
Q 023186 94 NCNLACLGVQ 103 (286)
Q Consensus 94 ~V~~a~~~~~ 103 (286)
+|++++.+..
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999965443
No 27
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=4.6e-20 Score=142.97 Aligned_cols=85 Identities=20% Similarity=0.358 Sum_probs=78.0
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeee
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i 93 (286)
.+..+...++|||+|||+++++++|+++|++|| |++|+|++|+.+++++|||||+|.+.++|++|| .++ ..|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 445667889999999999999999999999996 999999999999999999999999999999999 776 56999999
Q ss_pred EEEEcccC
Q 023186 94 NCNLACLG 101 (286)
Q Consensus 94 ~V~~a~~~ 101 (286)
+|++++.+
T Consensus 86 ~V~~a~~~ 93 (103)
T 2dng_A 86 RVDIAEGR 93 (103)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999643
No 28
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.5e-20 Score=142.17 Aligned_cols=82 Identities=27% Similarity=0.422 Sum_probs=76.8
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEE
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v-~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~ 97 (286)
...++|||+|||+++++++|+++|++||.|++| +|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 999999999999999999999999999999997 459999999999
Q ss_pred cccC
Q 023186 98 ACLG 101 (286)
Q Consensus 98 a~~~ 101 (286)
++.+
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 9643
No 29
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.5e-20 Score=143.86 Aligned_cols=86 Identities=16% Similarity=0.417 Sum_probs=78.5
Q ss_pred CCCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHhcC-CccCCe
Q 023186 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACVDAA-PVIDGR 91 (286)
Q Consensus 14 ~~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~t-g~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr 91 (286)
..+..+...++|||+|||+++++++|+++|++|| |++|+|++++.+ ++++|||||+|.+.++|++|| .++ ..|+|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp CCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 3455667889999999999999999999999999 999999999988 999999999999999999999 776 569999
Q ss_pred eeEEEEcccC
Q 023186 92 RANCNLACLG 101 (286)
Q Consensus 92 ~i~V~~a~~~ 101 (286)
+|+|++++.+
T Consensus 85 ~l~V~~a~~~ 94 (104)
T 1wi8_A 85 RIRVDVADQA 94 (104)
T ss_dssp ECEEEECCCC
T ss_pred EEEEEEccCC
Confidence 9999999654
No 30
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=140.70 Aligned_cols=86 Identities=24% Similarity=0.372 Sum_probs=79.4
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeee
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i 93 (286)
......+.++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++. .|+|++|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344566789999999999999999999999999999999999999999999999999999999999999975 5999999
Q ss_pred EEEEccc
Q 023186 94 NCNLACL 100 (286)
Q Consensus 94 ~V~~a~~ 100 (286)
+|++++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999853
No 31
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=2.8e-20 Score=149.08 Aligned_cols=88 Identities=22% Similarity=0.276 Sum_probs=80.7
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
+......++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ .+|+|+.|+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 4456678899999999999999999999999999999999999999999999999999999999999987 569999999
Q ss_pred EEEcccCCC
Q 023186 95 CNLACLGVQ 103 (286)
Q Consensus 95 V~~a~~~~~ 103 (286)
|++++....
T Consensus 96 v~~a~~~~~ 104 (126)
T 3ex7_B 96 VDWCFVRGP 104 (126)
T ss_dssp EEESEESSS
T ss_pred EEEecCCCC
Confidence 999976543
No 32
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=3.7e-20 Score=140.72 Aligned_cols=84 Identities=20% Similarity=0.395 Sum_probs=78.1
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~ 94 (286)
.....+.++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++. .|+|++|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999975 59999999
Q ss_pred EEEcc
Q 023186 95 CNLAC 99 (286)
Q Consensus 95 V~~a~ 99 (286)
|++++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99984
No 33
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.3e-20 Score=142.43 Aligned_cols=87 Identities=30% Similarity=0.461 Sum_probs=79.2
Q ss_pred CCCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCee
Q 023186 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (286)
Q Consensus 14 ~~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~ 92 (286)
.....+.+.++|||+|||+++++++|+++|++||+|++|+|+.+ +++++|||||+|.+.++|++||+.++ ..|+|++
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34456678999999999999999999999999999999999998 89999999999999999999999987 5699999
Q ss_pred eEEEEcccCC
Q 023186 93 ANCNLACLGV 102 (286)
Q Consensus 93 i~V~~a~~~~ 102 (286)
|+|++++.+.
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2d9p_A 85 LYVALAQRKE 94 (103)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEecccc
Confidence 9999996543
No 34
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=140.54 Aligned_cols=86 Identities=23% Similarity=0.289 Sum_probs=77.3
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeee
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i 93 (286)
...++...++|||+|||+++++++|+++|++||.|++|+|++|+.+ ++|||||+|.+.++|++||+.++. .|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 3456678899999999999999999999999999999999998654 689999999999999999999975 5999999
Q ss_pred EEEEcccCC
Q 023186 94 NCNLACLGV 102 (286)
Q Consensus 94 ~V~~a~~~~ 102 (286)
+|++++...
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2cqi_A 86 KVNWATTPS 94 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCCc
Confidence 999996543
No 35
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.5e-20 Score=144.83 Aligned_cols=87 Identities=34% Similarity=0.721 Sum_probs=79.5
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeE
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~ 94 (286)
...++...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|++.++|++||+..+..|+|++|+
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~ 88 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNID 88 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEB
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEE
Confidence 34567788999999999999999999999999999999999999999999999999999999999999933469999999
Q ss_pred EEEcccC
Q 023186 95 CNLACLG 101 (286)
Q Consensus 95 V~~a~~~ 101 (286)
|++++++
T Consensus 89 V~~a~~~ 95 (105)
T 2dh8_A 89 PKPCTPR 95 (105)
T ss_dssp CCCSCCS
T ss_pred EEEccCC
Confidence 9998644
No 36
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=7.9e-20 Score=141.79 Aligned_cols=86 Identities=26% Similarity=0.273 Sum_probs=77.7
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCC---ee
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDG---RR 92 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~G---r~ 92 (286)
..+...++|||+|||+++++++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+.++. .|.+ +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 344568999999999999999999999999999999999998 799999999999999999999999974 5787 99
Q ss_pred eEEEEcccCCC
Q 023186 93 ANCNLACLGVQ 103 (286)
Q Consensus 93 i~V~~a~~~~~ 103 (286)
|+|++++....
T Consensus 89 l~V~~a~~~~~ 99 (105)
T 2dnh_A 89 LVVKFADTDKE 99 (105)
T ss_dssp CEEEESCSSCC
T ss_pred EEEEECccCcc
Confidence 99999965443
No 37
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=137.76 Aligned_cols=81 Identities=37% Similarity=0.515 Sum_probs=75.0
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a 98 (286)
.+.++|||+|||+++++++|+++|++||+|.+|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 457899999999999999999999999999999999999999999999999999999999999987 5699999999999
Q ss_pred cc
Q 023186 99 CL 100 (286)
Q Consensus 99 ~~ 100 (286)
+.
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 38
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.2e-20 Score=141.10 Aligned_cols=82 Identities=26% Similarity=0.464 Sum_probs=76.0
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCC---CCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKA---TGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~---tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
.+.++|||+|||+++++++|+++|++||+|++|+|+.++. |++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999887 67999999999999999999999987 5699999999
Q ss_pred EEcccC
Q 023186 96 NLACLG 101 (286)
Q Consensus 96 ~~a~~~ 101 (286)
++++..
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 999653
No 39
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=7.4e-20 Score=135.74 Aligned_cols=80 Identities=33% Similarity=0.481 Sum_probs=75.3
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEccc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACL 100 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~~ 100 (286)
.++|||+|||+++++++|+++|++||+|.+++|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|++++.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 3689999999999999999999999999999999999999999999999999999999999987 569999999999964
Q ss_pred C
Q 023186 101 G 101 (286)
Q Consensus 101 ~ 101 (286)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 40
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=5.2e-20 Score=137.19 Aligned_cols=81 Identities=32% Similarity=0.461 Sum_probs=76.4
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~ 97 (286)
+.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4568999999999999999999999999999999999999999999999999999999999999987 569999999999
Q ss_pred cc
Q 023186 98 AC 99 (286)
Q Consensus 98 a~ 99 (286)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 41
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.4e-19 Score=141.01 Aligned_cols=85 Identities=22% Similarity=0.333 Sum_probs=77.6
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
.......++|||+|||+++++++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3455678999999999999999999999999999999999998 59999999999999999999999987 569999999
Q ss_pred EEEcccC
Q 023186 95 CNLACLG 101 (286)
Q Consensus 95 V~~a~~~ 101 (286)
|++++..
T Consensus 88 v~~a~~~ 94 (114)
T 2do0_A 88 VKMDERA 94 (114)
T ss_dssp EEECSCC
T ss_pred EEEcccC
Confidence 9998643
No 42
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.5e-20 Score=141.86 Aligned_cols=86 Identities=22% Similarity=0.296 Sum_probs=79.4
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
+......++|||+|||+++++++|+++|++||+|++|+|+.|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 3445667899999999999999999999999999999999999999999999999999999999999987 569999999
Q ss_pred EEEcccC
Q 023186 95 CNLACLG 101 (286)
Q Consensus 95 V~~a~~~ 101 (286)
|++++.+
T Consensus 97 V~~a~~~ 103 (106)
T 1p27_B 97 VDWCFVR 103 (106)
T ss_dssp EEESEES
T ss_pred EEeecCC
Confidence 9999654
No 43
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=139.80 Aligned_cols=84 Identities=20% Similarity=0.409 Sum_probs=77.7
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V 95 (286)
..+...++|||+|||+++++++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+.++. .|+|++|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999999999999999999999999999999998 899999999999999999999999975 599999999
Q ss_pred EEcccC
Q 023186 96 NLACLG 101 (286)
Q Consensus 96 ~~a~~~ 101 (286)
++++++
T Consensus 91 ~~a~~~ 96 (100)
T 2do4_A 91 AISNSG 96 (100)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999653
No 44
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=151.69 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=79.5
Q ss_pred CCCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEE--EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-C----
Q 023186 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--AVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P---- 86 (286)
Q Consensus 14 ~~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~--v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~---- 86 (286)
..+..+...++|||+|||++++|++|+++|++||.|+. |+|++|+.|+++||||||+|.+. +|++||+.++ .
T Consensus 15 ~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~ 93 (131)
T 2m2b_A 15 SEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPL 93 (131)
T ss_dssp CCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCc
Confidence 34456678899999999999999999999999999977 99999999999999999999999 9999999997 5
Q ss_pred ccCCeeeEEEEcccC
Q 023186 87 VIDGRRANCNLACLG 101 (286)
Q Consensus 87 ~i~Gr~i~V~~a~~~ 101 (286)
.|+|++|+|++++..
T Consensus 94 ~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 94 TIDGKTINVEFAKGS 108 (131)
T ss_dssp CGGGCCCCCEECCCS
T ss_pred cCCCEEEEEEECCCC
Confidence 799999999999653
No 45
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7e-20 Score=144.08 Aligned_cols=86 Identities=23% Similarity=0.334 Sum_probs=79.4
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEE--------EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-C
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--------EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P 86 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~--------~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~ 86 (286)
+.++.+.++|||+|||+++++++|+++|++||.|+ +|+|+.|+.+++++|||||+|.+.++|++||+.++ .
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34667889999999999999999999999999999 69999999999999999999999999999999987 5
Q ss_pred ccCCeeeEEEEcccC
Q 023186 87 VIDGRRANCNLACLG 101 (286)
Q Consensus 87 ~i~Gr~i~V~~a~~~ 101 (286)
.|+|++|+|++++.+
T Consensus 89 ~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 89 DFQGSKLKVSLARKK 103 (113)
T ss_dssp EETTEECEEECSSCC
T ss_pred ccCCCEEEEEECCCC
Confidence 699999999999643
No 46
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=9.8e-20 Score=139.80 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=77.3
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEE-EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCee---
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL-EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRR--- 92 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~-~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~--- 92 (286)
.....++|||+|||++++|++|+++|++||+|+ +|+|++|+.+++++|||||+|.+.++|++||+.++. .|+|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 355789999999999999999999999999999 999999999999999999999999999999999974 599999
Q ss_pred -eEEEEccc
Q 023186 93 -ANCNLACL 100 (286)
Q Consensus 93 -i~V~~a~~ 100 (286)
|+|++++.
T Consensus 85 ~l~v~~a~~ 93 (99)
T 2div_A 85 RFKLNYATY 93 (99)
T ss_dssp ECCEEETTC
T ss_pred eEEEeecCC
Confidence 99999854
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=1.3e-20 Score=142.78 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=70.9
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcC--CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcc
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG--~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~ 99 (286)
.+|||+|||++++|++|+++|++|| +|++|+|+.|+.++++||||||+|.+.++|++||+.++ .+|+|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999997 56999999999986
Q ss_pred cC
Q 023186 100 LG 101 (286)
Q Consensus 100 ~~ 101 (286)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 48
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=7.3e-20 Score=145.22 Aligned_cols=79 Identities=28% Similarity=0.427 Sum_probs=72.5
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEccc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACL 100 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~~ 100 (286)
.++|||+|||++++|++|+++|++||+|++|+|++|+ +++||||||+|.+.++|++||+.++ .+|+|++|+|++++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5689999999999999999999999999999999986 4589999999999999999999987 569999999999865
Q ss_pred CC
Q 023186 101 GV 102 (286)
Q Consensus 101 ~~ 102 (286)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 49
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=138.55 Aligned_cols=86 Identities=29% Similarity=0.499 Sum_probs=77.4
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeee
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i 93 (286)
....+.+.++|||+|||+++++++|+++|++||.|++|+|+.++. .++|||||+|.+.++|++||+.++ ..|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345667889999999999999999999999999999999999864 389999999999999999999987 56999999
Q ss_pred EEEEcccCC
Q 023186 94 NCNLACLGV 102 (286)
Q Consensus 94 ~V~~a~~~~ 102 (286)
+|++++.+.
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 999996544
No 50
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=8.7e-20 Score=138.91 Aligned_cols=84 Identities=26% Similarity=0.393 Sum_probs=76.3
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeee
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i 93 (286)
.+..+...++|||+|||+++++++|+++|++||+|++|+|++++. ++++|||||+|.+.++|++||+.++ ..|+|++|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 345667889999999999999999999999999999999999986 9999999999999999999999987 56999999
Q ss_pred EEEEcc
Q 023186 94 NCNLAC 99 (286)
Q Consensus 94 ~V~~a~ 99 (286)
+|++++
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 999985
No 51
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-20 Score=148.71 Aligned_cols=86 Identities=21% Similarity=0.281 Sum_probs=78.4
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
.++...++|||+|||+++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++|| .++ ..|+|+.|+|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999 776 4699999999
Q ss_pred EEcccCCC
Q 023186 96 NLACLGVQ 103 (286)
Q Consensus 96 ~~a~~~~~ 103 (286)
++++.+..
T Consensus 99 ~~a~~~~~ 106 (114)
T 2cq4_A 99 QASQAEKN 106 (114)
T ss_dssp EEHHHHHH
T ss_pred EecCCCcc
Confidence 99976443
No 52
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.4e-20 Score=146.65 Aligned_cols=84 Identities=36% Similarity=0.655 Sum_probs=77.1
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~ 97 (286)
.+...++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+..+..|+|++|+|++
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEEC
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEE
Confidence 34456999999999999999999999999999999999999999999999999999999999999933569999999999
Q ss_pred cccC
Q 023186 98 ACLG 101 (286)
Q Consensus 98 a~~~ 101 (286)
++.+
T Consensus 103 a~~~ 106 (116)
T 1x4b_A 103 AVAR 106 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9654
No 53
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1.4e-19 Score=141.77 Aligned_cols=87 Identities=23% Similarity=0.301 Sum_probs=79.8
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
+......++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3455678999999999999999999999999999999999999999999999999999999999999987 459999999
Q ss_pred EEEcccCC
Q 023186 95 CNLACLGV 102 (286)
Q Consensus 95 V~~a~~~~ 102 (286)
|++++.+.
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99997543
No 54
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=4e-20 Score=164.16 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=75.0
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcC--CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEE
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG--~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~ 97 (286)
..++|||+||+++++|++|+++|++|| +|++|+|++|+.|+++||||||+|.+.++|++||+.|+ .+|+|++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999999999999999999999999999999997 569999999999
Q ss_pred ccc
Q 023186 98 ACL 100 (286)
Q Consensus 98 a~~ 100 (286)
++.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 55
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.5e-19 Score=138.32 Aligned_cols=80 Identities=24% Similarity=0.489 Sum_probs=75.9
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEccc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACL 100 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~~ 100 (286)
.++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|++++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 6899999999999999999999999999999999999999999999999999999999999997 459999999999965
Q ss_pred C
Q 023186 101 G 101 (286)
Q Consensus 101 ~ 101 (286)
+
T Consensus 82 ~ 82 (96)
T 2x1f_A 82 S 82 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 56
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=139.02 Aligned_cols=84 Identities=27% Similarity=0.398 Sum_probs=77.8
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-C
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P 86 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~--------v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~ 86 (286)
+......++|||+|||+++++++|+++|++||.|++ |+|++|+.+++++|||||+|.+.++|++||+.++ .
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344567899999999999999999999999999999 9999999999999999999999999999999987 5
Q ss_pred ccCCeeeEEEEcc
Q 023186 87 VIDGRRANCNLAC 99 (286)
Q Consensus 87 ~i~Gr~i~V~~a~ 99 (286)
.|+|++|+|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 6999999999873
No 57
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=4e-20 Score=143.21 Aligned_cols=83 Identities=20% Similarity=0.183 Sum_probs=77.4
Q ss_pred CCCccEEEEcCCCc------cCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCC-
Q 023186 19 DTTYTKVFVGGLAW------ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDG- 90 (286)
Q Consensus 19 d~~~~~LfVgnLp~------~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~G- 90 (286)
+...++|||+|||. ++++++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|++||+.++ ..|+|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 44578999999999 99999999999999999999999999999999999999999999999999997 56999
Q ss_pred eeeEEEEcccC
Q 023186 91 RRANCNLACLG 101 (286)
Q Consensus 91 r~i~V~~a~~~ 101 (286)
+.|+|+++.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999653
No 58
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=141.97 Aligned_cols=86 Identities=33% Similarity=0.532 Sum_probs=79.8
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
+..+...++|||+|||.++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4556778999999999999999999999999999999999999999999999999999999999999987 469999999
Q ss_pred EEEcccC
Q 023186 95 CNLACLG 101 (286)
Q Consensus 95 V~~a~~~ 101 (286)
|++++.+
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9999643
No 59
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.6e-19 Score=139.22 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=74.4
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeee
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i 93 (286)
....+...++|||+|||+++++++|+++|++||.|++|+|+.+ ++++|||||+|++.++|++||+.++ ..|+|++|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3456677899999999999999999999999999999999654 5689999999999999999999997 56999999
Q ss_pred EEEEccc
Q 023186 94 NCNLACL 100 (286)
Q Consensus 94 ~V~~a~~ 100 (286)
+|++++.
T Consensus 92 ~V~~a~~ 98 (109)
T 1x4a_A 92 RVEFPRS 98 (109)
T ss_dssp EEECCCC
T ss_pred EEEEccc
Confidence 9999954
No 60
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.6e-20 Score=140.16 Aligned_cols=83 Identities=19% Similarity=0.297 Sum_probs=77.6
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
..+...++|||+|||+++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 355678999999999999999999999999999999999999999999999999999999999999997 5699999999
Q ss_pred EEcc
Q 023186 96 NLAC 99 (286)
Q Consensus 96 ~~a~ 99 (286)
++++
T Consensus 90 ~~a~ 93 (98)
T 2cqp_A 90 VLGS 93 (98)
T ss_dssp EESS
T ss_pred EEcC
Confidence 9985
No 61
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=1e-19 Score=147.64 Aligned_cols=86 Identities=24% Similarity=0.395 Sum_probs=79.4
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
..+..+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455678999999999999999999999999999999999999999999999999999999999999997 569999999
Q ss_pred EEEcccC
Q 023186 95 CNLACLG 101 (286)
Q Consensus 95 V~~a~~~ 101 (286)
|++++.+
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9999643
No 62
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=1.2e-19 Score=136.39 Aligned_cols=80 Identities=19% Similarity=0.428 Sum_probs=74.9
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a 98 (286)
.+.++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++|| .++ ..|+|++|+|+++
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 35689999999999999999999999999999999999999999999999999999999999 776 5699999999998
Q ss_pred cc
Q 023186 99 CL 100 (286)
Q Consensus 99 ~~ 100 (286)
+.
T Consensus 83 ~~ 84 (89)
T 3ucg_A 83 RT 84 (89)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 63
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=134.95 Aligned_cols=81 Identities=27% Similarity=0.424 Sum_probs=75.0
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCC-cccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR-SKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~-skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a 98 (286)
..++|||+|||+++++++|+++|++||.|.+|+|+.++.++. ++|||||+|.+.++|++||+.++ ..|+|++|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999988766 99999999999999999999987 5699999999999
Q ss_pred ccC
Q 023186 99 CLG 101 (286)
Q Consensus 99 ~~~ 101 (286)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 64
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=4.9e-20 Score=140.29 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=74.4
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
......++|||+|||+++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 345567999999999999999999999999999999999999999999999999999999999999987 5699999999
Q ss_pred EEcc
Q 023186 96 NLAC 99 (286)
Q Consensus 96 ~~a~ 99 (286)
++++
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9885
No 65
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.6e-20 Score=134.95 Aligned_cols=76 Identities=38% Similarity=0.748 Sum_probs=73.3
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEc
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a 98 (286)
++|||+|||+++++++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++||+.++..|+|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5799999999999999999999999999999999999999999999999999999999999997799999999987
No 66
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.8e-19 Score=138.24 Aligned_cols=85 Identities=18% Similarity=0.333 Sum_probs=77.7
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCC-EEEEEEe-ecCCCCCcccEEEEEeCCHHHHHHHHHhcC---CccCCeee
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVI-TDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRA 93 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~-I~~v~i~-~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~---~~i~Gr~i 93 (286)
..+.++|||+|||+++++++|+++|++||. |++|.|+ .++.+++++|||||+|.+.++|++||+.++ ..|+|++|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 888899999999999999999999999985 35999999
Q ss_pred EEEEcccCCC
Q 023186 94 NCNLACLGVQ 103 (286)
Q Consensus 94 ~V~~a~~~~~ 103 (286)
+|++++.+..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999976544
No 67
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=149.85 Aligned_cols=80 Identities=23% Similarity=0.413 Sum_probs=75.0
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcC--CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEE
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG--~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~ 97 (286)
..++|||+||+++++|++|+++|++|| +|++|+|+.|+.++++||||||+|.+.++|++||+.++ .+|+|++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999999999999999999999999999999999997 569999999999
Q ss_pred ccc
Q 023186 98 ACL 100 (286)
Q Consensus 98 a~~ 100 (286)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 964
No 68
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=4.6e-19 Score=134.09 Aligned_cols=82 Identities=27% Similarity=0.482 Sum_probs=75.3
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
..+...++|||+|||+++++++|+++|++||+|++|+|+++ +++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999999884 78999999999999999999999987 5699999999
Q ss_pred EEccc
Q 023186 96 NLACL 100 (286)
Q Consensus 96 ~~a~~ 100 (286)
++++.
T Consensus 81 ~~a~~ 85 (92)
T 2dgv_A 81 RIDRN 85 (92)
T ss_dssp EECSC
T ss_pred EEcCC
Confidence 99954
No 69
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.8e-20 Score=141.77 Aligned_cols=85 Identities=27% Similarity=0.538 Sum_probs=78.9
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~ 96 (286)
.+...++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++. .|+|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 455679999999999999999999999999999999999999999999999999999999999999974 5999999999
Q ss_pred EcccCC
Q 023186 97 LACLGV 102 (286)
Q Consensus 97 ~a~~~~ 102 (286)
+++...
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 996544
No 70
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=4.5e-19 Score=137.96 Aligned_cols=83 Identities=30% Similarity=0.425 Sum_probs=76.8
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
.......++|||+|||+++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.|+ ..|+|++|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3455678999999999999999999999999999999999998 89999999999999999999999987 569999999
Q ss_pred EEEcc
Q 023186 95 CNLAC 99 (286)
Q Consensus 95 V~~a~ 99 (286)
|++++
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99984
No 71
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=136.71 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=71.2
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCC----
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDG---- 90 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~G---- 90 (286)
+......++|||+|||+++++++|+++|++||+|++|+|+.| |||||+|.+.++|++||+.|+. +|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 9 PPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 344567899999999999999999999999999999999876 7999999999999999999975 5999
Q ss_pred -eeeEEEEccc
Q 023186 91 -RRANCNLACL 100 (286)
Q Consensus 91 -r~i~V~~a~~ 100 (286)
+.|+|++++.
T Consensus 82 ~~~i~V~~a~~ 92 (108)
T 1x4c_A 82 TAYIRVKVDGP 92 (108)
T ss_dssp EEEEEEEESSC
T ss_pred ceEEEEEeCCC
Confidence 9999999965
No 72
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.4e-19 Score=141.08 Aligned_cols=79 Identities=14% Similarity=0.200 Sum_probs=71.2
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC---CccCCeeeE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRAN 94 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~---~~i~Gr~i~ 94 (286)
.+.+.++|||+|||++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ .+|+|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3567899999999999999999999999999999999875 6899999999999999999874 469999999
Q ss_pred EEEcccCC
Q 023186 95 CNLACLGV 102 (286)
Q Consensus 95 V~~a~~~~ 102 (286)
|++++.+.
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99996543
No 73
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=140.03 Aligned_cols=82 Identities=21% Similarity=0.286 Sum_probs=73.4
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V 95 (286)
.......++|||+|||++++|++|+++|++|| +++|+|++|+ ++++||||||+|++.++|++||+..+.+|++|.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 86 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence 34556789999999999999999999999999 4599999998 899999999999999999999964346799999999
Q ss_pred EEcc
Q 023186 96 NLAC 99 (286)
Q Consensus 96 ~~a~ 99 (286)
.++.
T Consensus 87 ~~~~ 90 (102)
T 1wez_A 87 FLNS 90 (102)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9884
No 74
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.8e-19 Score=135.37 Aligned_cols=80 Identities=13% Similarity=0.165 Sum_probs=73.3
Q ss_pred CCCccEEEEcCCCccCCHHHHH----HHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeee
Q 023186 19 DTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~----~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i 93 (286)
....++|||+|||+++++++|+ ++|++||+|++|+|++|+.+ |+||||+|.+.++|++||+.++. .|+|++|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456899999999999999999 99999999999999999876 88999999999999999999985 5999999
Q ss_pred EEEEcccC
Q 023186 94 NCNLACLG 101 (286)
Q Consensus 94 ~V~~a~~~ 101 (286)
+|++++..
T Consensus 83 ~V~~a~~~ 90 (96)
T 2dgx_A 83 LVSLATGA 90 (96)
T ss_dssp EEEECCCS
T ss_pred EEEEcCCC
Confidence 99999643
No 75
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=138.12 Aligned_cols=83 Identities=24% Similarity=0.248 Sum_probs=75.2
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEE-EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~-v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V 95 (286)
.+....++|||+|||++++|++|+++|++||.|.+ |.|+.+ .+++++|||||+|.+.++|++||+..+..|++|.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEE
Confidence 34567899999999999999999999999999998 888888 7899999999999999999999999446799999999
Q ss_pred EEccc
Q 023186 96 NLACL 100 (286)
Q Consensus 96 ~~a~~ 100 (286)
.++..
T Consensus 89 ~~~~~ 93 (104)
T 1wg5_A 89 FKSSR 93 (104)
T ss_dssp EEECT
T ss_pred EECCH
Confidence 99853
No 76
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=6.3e-19 Score=146.37 Aligned_cols=84 Identities=27% Similarity=0.476 Sum_probs=78.4
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~ 96 (286)
.....++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++. .|+|+.|+|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 445679999999999999999999999999999999999999999999999999999999999999975 5999999999
Q ss_pred EcccC
Q 023186 97 LACLG 101 (286)
Q Consensus 97 ~a~~~ 101 (286)
+++..
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 99654
No 77
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=4.8e-19 Score=141.47 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=74.5
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~ 99 (286)
..++|||+|||+++++++|+++|++||+|++|+|+.|+.+++++|||||+|.+.++|++|| .++ ..|+|++|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999999999999999999999999999 676 56999999999996
Q ss_pred c
Q 023186 100 L 100 (286)
Q Consensus 100 ~ 100 (286)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 78
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=4.4e-19 Score=143.92 Aligned_cols=83 Identities=31% Similarity=0.434 Sum_probs=76.9
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~ 94 (286)
...+.+.++|||+|||.++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++. .|+|++|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999984 59999999
Q ss_pred EEEc
Q 023186 95 CNLA 98 (286)
Q Consensus 95 V~~a 98 (286)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 79
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.9e-19 Score=132.53 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=75.4
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V 95 (286)
..+...++|||+|||+++++++|+++|++| .|.+|+|+++ .+++++|||||+|.+.++|++||+ ++. .|+|++|+|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 345678999999999999999999999999 9999999999 789999999999999999999999 875 599999999
Q ss_pred EEcccC
Q 023186 96 NLACLG 101 (286)
Q Consensus 96 ~~a~~~ 101 (286)
++++.+
T Consensus 82 ~~a~~~ 87 (91)
T 2dgw_A 82 FREKSG 87 (91)
T ss_dssp EEESSC
T ss_pred EECCcC
Confidence 999643
No 80
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.9e-19 Score=139.70 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=75.5
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~ 97 (286)
.+...++|||+|||+++|+++|+++|++||.|.+|.|++|+. +++||||||+|.+.++|++||+..+..|+|+.|+|++
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999999999987 9999999999999999999999334679999999998
Q ss_pred ccc
Q 023186 98 ACL 100 (286)
Q Consensus 98 a~~ 100 (286)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 864
No 81
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=1.7e-18 Score=134.19 Aligned_cols=81 Identities=28% Similarity=0.400 Sum_probs=71.7
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V 95 (286)
....+.++|||+|||+++++++|+++|++||+|++|+|+ ++||||+|.+.++|++||+.|+. .|+|++|+|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 345678999999999999999999999999999999986 45999999999999999999874 599999999
Q ss_pred EEcccCCCCC
Q 023186 96 NLACLGVQRS 105 (286)
Q Consensus 96 ~~a~~~~~~~ 105 (286)
++++....+.
T Consensus 78 ~~a~~~~~~~ 87 (103)
T 2dgu_A 78 VFAKPPDQKR 87 (103)
T ss_dssp EECCCCCCCC
T ss_pred EEcCCCcccc
Confidence 9997655443
No 82
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.2e-20 Score=145.30 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=76.5
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCE-EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEI-LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I-~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~ 96 (286)
.+.+.++|||+|||+++++++|+++|++||.| .+|+|++|+ +++++|||||+|.+.++|++||+..+..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 45667899999999999999999999999999 899999998 8999999999999999999999983356999999999
Q ss_pred EcccCC
Q 023186 97 LACLGV 102 (286)
Q Consensus 97 ~a~~~~ 102 (286)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 996543
No 83
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=2.2e-19 Score=146.76 Aligned_cols=86 Identities=27% Similarity=0.456 Sum_probs=79.3
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
+.++...++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455677899999999999999999999999999999999999999999999999999999999999987 569999999
Q ss_pred EEEcccC
Q 023186 95 CNLACLG 101 (286)
Q Consensus 95 V~~a~~~ 101 (286)
|++++..
T Consensus 121 V~~a~~~ 127 (135)
T 2lea_A 121 VQMARYG 127 (135)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999653
No 84
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=139.79 Aligned_cols=83 Identities=18% Similarity=0.423 Sum_probs=72.4
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecC-CCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK-ATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk-~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~ 94 (286)
......++|||+||++++++++|+++|++|| |++|+|++++ .+++++|||||+|.+.++|++|| .++ ..|+|++|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 4456789999999999999999999999999 9999999998 68999999999999999999999 776 569999999
Q ss_pred EEEcccC
Q 023186 95 CNLACLG 101 (286)
Q Consensus 95 V~~a~~~ 101 (286)
|++++.+
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9999643
No 85
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=1.2e-19 Score=132.26 Aligned_cols=75 Identities=31% Similarity=0.544 Sum_probs=71.6
Q ss_pred EEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEc
Q 023186 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (286)
Q Consensus 24 ~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a 98 (286)
+|||+|||+++++++|+++|++||+|.+|.+++++.+++++|||||+|.+.++|++||+..+..|+|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998667899999999875
No 86
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.8e-20 Score=135.98 Aligned_cols=79 Identities=29% Similarity=0.476 Sum_probs=73.3
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a 98 (286)
...++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 467899999999999999999999999999999999999999999999999999999999999987 4699998877654
No 87
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9.6e-19 Score=134.84 Aligned_cols=82 Identities=26% Similarity=0.359 Sum_probs=72.7
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~ 94 (286)
...+...++|||+|||+++++++|+++|++||+| +|+.+ .+++++|||||+|.+.++|++||+.++. .|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3456678999999999999999999999999987 56666 6799999999999999999999999975 59999999
Q ss_pred EEEcccC
Q 023186 95 CNLACLG 101 (286)
Q Consensus 95 V~~a~~~ 101 (286)
|++++.+
T Consensus 85 v~~a~~~ 91 (101)
T 2fc9_A 85 LELQGPR 91 (101)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 9999643
No 88
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.9e-19 Score=139.09 Aligned_cols=84 Identities=27% Similarity=0.489 Sum_probs=76.2
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeee
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i 93 (286)
....+...++|||+||+.++++++|+++|++||+|++|+|++++ ++++|||||+|.+.++|++||+.++ ..|+|++|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34566788999999999999999999999999999999999986 4589999999999999999999987 46999999
Q ss_pred EEEEccc
Q 023186 94 NCNLACL 100 (286)
Q Consensus 94 ~V~~a~~ 100 (286)
+|++++.
T Consensus 100 ~V~~a~~ 106 (109)
T 2err_A 100 EVNNATA 106 (109)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999964
No 89
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=2.1e-19 Score=131.12 Aligned_cols=74 Identities=41% Similarity=0.772 Sum_probs=70.0
Q ss_pred EEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEc
Q 023186 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (286)
Q Consensus 24 ~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a 98 (286)
+|||+|||+++++++|+++|++||+|.+|+++.++.+++++|||||+|.+.++|++||+ ++ ..|+|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999999999999999999999999998 65 6799999999875
No 90
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=135.91 Aligned_cols=81 Identities=12% Similarity=0.159 Sum_probs=71.9
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC---CccCCee
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRR 92 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~---~~i~Gr~ 92 (286)
.....+.++|||+|||++++|++|+++|++||+|++|.|+++ ||||||+|++.++|++||+.++ .+|+|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 445567899999999999999999999999999999998765 7899999999999999999863 4599999
Q ss_pred eEEEEcccCC
Q 023186 93 ANCNLACLGV 102 (286)
Q Consensus 93 i~V~~a~~~~ 102 (286)
|+|++++.+.
T Consensus 83 l~V~~a~~~~ 92 (101)
T 2cq1_A 83 IYIQYSNHKE 92 (101)
T ss_dssp CEEEECSCSS
T ss_pred EEEEEcCccc
Confidence 9999996543
No 91
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=1.7e-18 Score=138.57 Aligned_cols=83 Identities=29% Similarity=0.423 Sum_probs=77.2
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~ 96 (286)
.....++|||+||++++++++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+.++. .|+|++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44667899999999999999999999999999999999998 899999999999999999999999975 5999999999
Q ss_pred EcccC
Q 023186 97 LACLG 101 (286)
Q Consensus 97 ~a~~~ 101 (286)
++...
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 99653
No 92
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=134.65 Aligned_cols=81 Identities=33% Similarity=0.486 Sum_probs=73.6
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
..+...++|||+|||+++++++|+++|++| .+|+++.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 455678999999999999999999999977 378888999999999999999999999999999987 5699999999
Q ss_pred EEccc
Q 023186 96 NLACL 100 (286)
Q Consensus 96 ~~a~~ 100 (286)
++++.
T Consensus 87 ~~a~~ 91 (102)
T 2fc8_A 87 DWAKP 91 (102)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99964
No 93
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=7.9e-19 Score=138.25 Aligned_cols=85 Identities=25% Similarity=0.369 Sum_probs=76.1
Q ss_pred CCCCCccEEEEcCCCccCCHHHHH---HHHHhcCCEEEEEEeecCCCC---CcccEEEEEeCCHHHHHHHHHhcCC-ccC
Q 023186 17 FGDTTYTKVFVGGLAWETQKETME---KYFEQFGEILEAVVITDKATG---RSKGYGFVTFREPEAAMKACVDAAP-VID 89 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~---~~F~~fG~I~~v~i~~dk~tg---~skGfgFV~F~~~e~A~~Ai~~l~~-~i~ 89 (286)
......++|||+|||+++++++|+ ++|++||+|++|+|++++.++ +++|||||+|++.++|++||+.|+. +|+
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 345668899999999999999999 999999999999999998754 5569999999999999999999975 599
Q ss_pred CeeeEEEEcccC
Q 023186 90 GRRANCNLACLG 101 (286)
Q Consensus 90 Gr~i~V~~a~~~ 101 (286)
|++|+|++++.+
T Consensus 90 gr~l~V~~a~~k 101 (111)
T 2cpi_A 90 GRTLKASLGTTK 101 (111)
T ss_dssp TEEEEEESCCCC
T ss_pred CEEEEEEecccc
Confidence 999999999643
No 94
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=1.5e-18 Score=145.95 Aligned_cols=88 Identities=23% Similarity=0.290 Sum_probs=79.1
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~ 94 (286)
+......++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.|+. .|.|+.|+
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999974 59999999
Q ss_pred EEEcccCCC
Q 023186 95 CNLACLGVQ 103 (286)
Q Consensus 95 V~~a~~~~~ 103 (286)
|.++.....
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999976443
No 95
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=8.8e-19 Score=137.06 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=70.2
Q ss_pred CCCCCccEEEEcCCCc-cCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC---CccCCee
Q 023186 17 FGDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRR 92 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~-~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~---~~i~Gr~ 92 (286)
....+.++|||+|||+ +++|++|+++|++||+|++|+|+++ |+||||+|++.++|++||+.++ .+|+|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3445789999999999 9999999999999999999999876 4799999999999999999885 2499999
Q ss_pred eEEEEccc
Q 023186 93 ANCNLACL 100 (286)
Q Consensus 93 i~V~~a~~ 100 (286)
|+|++++.
T Consensus 84 l~V~~a~~ 91 (102)
T 1x4d_A 84 VRVHLSQK 91 (102)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 99999964
No 96
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=135.24 Aligned_cols=80 Identities=23% Similarity=0.244 Sum_probs=70.9
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC---CccCCee
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRR 92 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~---~~i~Gr~ 92 (286)
.....+.++|||+|||++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ ..|+|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 344566799999999999999999999999999999998764 6899999999999999999874 3499999
Q ss_pred eEEEEcccC
Q 023186 93 ANCNLACLG 101 (286)
Q Consensus 93 i~V~~a~~~ 101 (286)
|+|++++.+
T Consensus 83 l~V~~a~~~ 91 (104)
T 1wex_A 83 AFFNYSTSK 91 (104)
T ss_dssp CEEEECSSS
T ss_pred EEEEEccCc
Confidence 999999653
No 97
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3e-18 Score=129.46 Aligned_cols=76 Identities=30% Similarity=0.528 Sum_probs=69.7
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~ 96 (286)
.+...++|||+|||+++++++|+++|++||+|++|+|+ |+||||+|.+.++|++||+.++. .|+|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678999999999999999999999999999999987 57999999999999999999975 6999999999
Q ss_pred EcccC
Q 023186 97 LACLG 101 (286)
Q Consensus 97 ~a~~~ 101 (286)
+++.+
T Consensus 76 ~a~~~ 80 (90)
T 2dnq_A 76 ASKNK 80 (90)
T ss_dssp CSSCC
T ss_pred ECCCC
Confidence 99643
No 98
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=3.4e-18 Score=165.18 Aligned_cols=85 Identities=22% Similarity=0.465 Sum_probs=78.6
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~ 97 (286)
....++|||+||+++|++++|+++|++||.|+.|+|+.++.+++++|||||+|.+.++|++||+.|| .+|+|+.|.|++
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999999999999999999999999999999997 469999999999
Q ss_pred cccCCC
Q 023186 98 ACLGVQ 103 (286)
Q Consensus 98 a~~~~~ 103 (286)
+.....
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 976544
No 99
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-19 Score=139.79 Aligned_cols=86 Identities=17% Similarity=0.172 Sum_probs=72.8
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
....+.++|||+|||+++++++|+++|++||.|.++.+..+..+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344567999999999999999999999999999544333333378999999999999999999999997 5699999999
Q ss_pred EEcccCC
Q 023186 96 NLACLGV 102 (286)
Q Consensus 96 ~~a~~~~ 102 (286)
++++...
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpx_A 100 EFGKNKK 106 (115)
T ss_dssp EECCCCS
T ss_pred EEccCCC
Confidence 9996543
No 100
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=2.3e-19 Score=135.41 Aligned_cols=78 Identities=27% Similarity=0.514 Sum_probs=72.4
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcccC
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACLG 101 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~~~ 101 (286)
++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.+ |++|++.++ ..|+|++|+|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 999999997 4599999999999654
No 101
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=5.8e-19 Score=143.20 Aligned_cols=82 Identities=24% Similarity=0.282 Sum_probs=74.6
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEE--EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~--~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~ 94 (286)
.+..+.++|||+|||++++|++|+++|++| .|+ +|+|++|+. +++||||||+|++.++|++||+.++..|+||.|+
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 344567899999999999999999999999 787 899999987 9999999999999999999999877779999999
Q ss_pred EEEccc
Q 023186 95 CNLACL 100 (286)
Q Consensus 95 V~~a~~ 100 (286)
|..+..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998853
No 102
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=137.95 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=72.3
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC---CccCCeee
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRA 93 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~---~~i~Gr~i 93 (286)
....+.++|||+|||++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ .+|+|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34556789999999999999999999999999999999876 6899999999999999999885 36999999
Q ss_pred EEEEcccCCC
Q 023186 94 NCNLACLGVQ 103 (286)
Q Consensus 94 ~V~~a~~~~~ 103 (286)
+|++++.+..
T Consensus 100 ~V~~a~~k~~ 109 (119)
T 2ad9_A 100 YIQFSNHKEL 109 (119)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCCCC
Confidence 9999965443
No 103
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=1.8e-19 Score=148.55 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=71.2
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
....+.++|||+|||++++|++|+++|++|| |++|+|++|++ +++||||||+|++.++|++|| .++ .+|++|.|+|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3456778999999999999999999999999 77999999986 999999999999999999999 565 5699999999
Q ss_pred EEccc
Q 023186 96 NLACL 100 (286)
Q Consensus 96 ~~a~~ 100 (286)
.++..
T Consensus 118 ~~a~~ 122 (139)
T 2hgn_A 118 FLNST 122 (139)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99854
No 104
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.9e-18 Score=127.65 Aligned_cols=78 Identities=23% Similarity=0.427 Sum_probs=70.4
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~ 94 (286)
...+...++|||+|||+++++++|+++|++||.|++|+|+++ ||||+|.+.++|++||+.++. .|+|++|+
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 345677899999999999999999999999999999999743 999999999999999999975 59999999
Q ss_pred EEEcccC
Q 023186 95 CNLACLG 101 (286)
Q Consensus 95 V~~a~~~ 101 (286)
|++++.+
T Consensus 76 V~~a~~~ 82 (92)
T 2dgt_A 76 VQLSTSR 82 (92)
T ss_dssp EEESSCC
T ss_pred EEEccCC
Confidence 9999643
No 105
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=1.3e-18 Score=138.73 Aligned_cols=83 Identities=16% Similarity=0.186 Sum_probs=75.5
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCC---EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCee
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~---I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~ 92 (286)
....+.++|||+|||++++|++|+++|++||. |++|+|++|+. +++||||||+|.+.++|++||+ ++ ..|+||.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34566899999999999999999999999999 89999999987 9999999999999999999999 66 5699999
Q ss_pred eEEEEcccC
Q 023186 93 ANCNLACLG 101 (286)
Q Consensus 93 i~V~~a~~~ 101 (286)
|+|.++...
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998543
No 106
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=2.3e-18 Score=135.36 Aligned_cols=81 Identities=25% Similarity=0.422 Sum_probs=70.0
Q ss_pred cCCCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCe
Q 023186 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGR 91 (286)
Q Consensus 13 ~~~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr 91 (286)
......+...++|||+|||+++++++|+++|++||+|++|+|+ +|||||+|.+.++|++||+.++ ..|+|+
T Consensus 22 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 22 HHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp ------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred ccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3344567788999999999999999999999999999999987 6899999999999999999987 459999
Q ss_pred eeEEEEcccC
Q 023186 92 RANCNLACLG 101 (286)
Q Consensus 92 ~i~V~~a~~~ 101 (286)
+|+|++++..
T Consensus 94 ~l~V~~a~~~ 103 (108)
T 2jvo_A 94 PLEVVYSKLP 103 (108)
T ss_dssp ECEEESCSCC
T ss_pred EEEEEEecCC
Confidence 9999999654
No 107
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=5e-20 Score=145.85 Aligned_cols=83 Identities=28% Similarity=0.395 Sum_probs=77.5
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEE--------EEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-Ccc
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI 88 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~--------v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i 88 (286)
++.+.++|||+|||+++++++|+++|++||.|.+ |+|+.|+.+++++|||||+|.+.++|++||+.++ ..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567899999999999999999999999999999 9999999999999999999999999999999987 469
Q ss_pred CCeeeEEEEccc
Q 023186 89 DGRRANCNLACL 100 (286)
Q Consensus 89 ~Gr~i~V~~a~~ 100 (286)
+|++|+|++++.
T Consensus 83 ~g~~l~V~~a~~ 94 (116)
T 2lcw_A 83 SGNPIKVSFATR 94 (116)
Confidence 999999999954
No 108
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.2e-18 Score=132.31 Aligned_cols=79 Identities=30% Similarity=0.527 Sum_probs=71.9
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
.+...++|||+|||+++++++|+++|++||.|++|+|+.+ +|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4556889999999999999999999999999999999876 6899999999999999999987 46999999999
Q ss_pred EcccCC
Q 023186 97 LACLGV 102 (286)
Q Consensus 97 ~a~~~~ 102 (286)
+++...
T Consensus 95 ~a~~~~ 100 (109)
T 1x4g_A 95 WGKESP 100 (109)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 996543
No 109
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=1e-18 Score=134.98 Aligned_cols=84 Identities=30% Similarity=0.505 Sum_probs=76.6
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~ 96 (286)
..+...++|||+|||+++++++|+++|++||.|++|+|++|+ +++++|||||+|.+.++|++||+ ....|+|++|+|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLG 81 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEE
Confidence 345678999999999999999999999999999999999998 99999999999999999999999 4467999999999
Q ss_pred EcccCC
Q 023186 97 LACLGV 102 (286)
Q Consensus 97 ~a~~~~ 102 (286)
++..+.
T Consensus 82 ~a~~~~ 87 (102)
T 2xs2_A 82 PAIRKQ 87 (102)
T ss_dssp EEEECC
T ss_pred ECCcCc
Confidence 986543
No 110
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.5e-18 Score=134.47 Aligned_cols=83 Identities=17% Similarity=0.377 Sum_probs=75.4
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-cc-------
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI------- 88 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i------- 88 (286)
..+...++|||+|||+++++++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+.++. .|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 345678999999999999999999999999999999999998 899999999999999999999999874 47
Q ss_pred -CCeeeEEEEccc
Q 023186 89 -DGRRANCNLACL 100 (286)
Q Consensus 89 -~Gr~i~V~~a~~ 100 (286)
.++.|+|+++.+
T Consensus 99 ~~~~~l~v~~a~p 111 (114)
T 1x5o_A 99 APTEPLLCKFSGP 111 (114)
T ss_dssp CCSSCBEEEECCC
T ss_pred CCCCceeEEccCC
Confidence 577899999853
No 111
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=131.92 Aligned_cols=75 Identities=28% Similarity=0.447 Sum_probs=69.6
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcccC
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACLG 101 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~~~ 101 (286)
++|||+|||+++++++|+++|++||+|++|+|+.+ ++|||||+|.+.++|++||+.++ ..|+|++|+|++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999887 68999999999999999999986 6699999999999654
Q ss_pred C
Q 023186 102 V 102 (286)
Q Consensus 102 ~ 102 (286)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 112
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=137.06 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=71.8
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~ 97 (286)
....++|||+|||++++|++|+++|++| .|++|+|++|+. ++++|||||+|.+.++|++||+ ++ ..|+||.|+|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 4456899999999999999999999999 899999999986 9999999999999999999995 55 569999999988
Q ss_pred ccc
Q 023186 98 ACL 100 (286)
Q Consensus 98 a~~ 100 (286)
+..
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 853
No 113
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=126.33 Aligned_cols=79 Identities=29% Similarity=0.441 Sum_probs=71.7
Q ss_pred CCCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc-C-CccCCee
Q 023186 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA-A-PVIDGRR 92 (286)
Q Consensus 15 ~~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l-~-~~i~Gr~ 92 (286)
.+..+.+.++|||+|||+++++++|+++|++||.|++|+++++ ||||||+|.+.++|++||+.+ + ..|+|++
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3456778899999999999999999999999999999999864 789999999999999999988 6 4599999
Q ss_pred eEEEEcc
Q 023186 93 ANCNLAC 99 (286)
Q Consensus 93 i~V~~a~ 99 (286)
|+|++++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999984
No 114
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-19 Score=137.27 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=73.7
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~ 97 (286)
....++|||+|||+++++++|+++|++||.|.+ .++.++.+++++|||||+|.+.++|++||+ ++ ..|+|++|+|++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 446789999999999999999999999999988 777888889999999999999999999999 76 569999999999
Q ss_pred cccC
Q 023186 98 ACLG 101 (286)
Q Consensus 98 a~~~ 101 (286)
++.+
T Consensus 92 a~~~ 95 (101)
T 1fj7_A 92 PKGR 95 (101)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 9643
No 115
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-18 Score=137.03 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=69.8
Q ss_pred CCCCCccEEEEcCCCcc-CCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC---CccCCee
Q 023186 17 FGDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRR 92 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~-vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~---~~i~Gr~ 92 (286)
......++|||+|||++ ++|++|+++|++||+|++|+|++ +||||||+|++.++|++||+.++ .+|+||+
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34567899999999998 99999999999999999999974 47899999999999999999874 3599999
Q ss_pred eEEEEccc
Q 023186 93 ANCNLACL 100 (286)
Q Consensus 93 i~V~~a~~ 100 (286)
|+|++++.
T Consensus 94 l~V~~a~~ 101 (112)
T 1x4f_A 94 VKVDLSEK 101 (112)
T ss_dssp CEEEEECS
T ss_pred EEEEECcc
Confidence 99999954
No 116
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=1.7e-18 Score=142.09 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=75.5
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCC---EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCee
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~---I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~ 92 (286)
.++.+.++|||+|||+++||++|+++|++||. |++|+|++|+. +++||||||+|++.++|++||+ ++ .+|+||.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34567899999999999999999999999999 89999999987 9999999999999999999999 76 5699999
Q ss_pred eEEEEccc
Q 023186 93 ANCNLACL 100 (286)
Q Consensus 93 i~V~~a~~ 100 (286)
|+|.+++.
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99999854
No 117
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=129.82 Aligned_cols=77 Identities=17% Similarity=0.378 Sum_probs=67.5
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCC-EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC--ccCCeeeE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP--VIDGRRAN 94 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~-I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~--~i~Gr~i~ 94 (286)
.+...++|||+|||+++++++|+++|++||+ |..+.+. ++|||||+|.+.++|++||+.++. +|+|++|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4566799999999999999999999999999 5555552 478999999999999999999975 59999999
Q ss_pred EEEcccC
Q 023186 95 CNLACLG 101 (286)
Q Consensus 95 V~~a~~~ 101 (286)
|++++.+
T Consensus 77 v~~a~~~ 83 (93)
T 2cqh_A 77 VDYSVSK 83 (93)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999654
No 118
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.4e-19 Score=140.62 Aligned_cols=83 Identities=18% Similarity=0.318 Sum_probs=75.5
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
.+...++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++||+ ++ ..|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44567899999999999999999999999999997788888899999999999999999999999 76 56999999999
Q ss_pred EcccC
Q 023186 97 LACLG 101 (286)
Q Consensus 97 ~a~~~ 101 (286)
++...
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 119
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=5.3e-18 Score=132.18 Aligned_cols=78 Identities=24% Similarity=0.252 Sum_probs=69.5
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-C--ccCCeee
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P--VIDGRRA 93 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~--~i~Gr~i 93 (286)
....+.++|||+|||++++|++|+++|++||.|++|++++ .||||||+|++.++|++||+.++ . .|.||+|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3445789999999999999999999999999999999975 36899999999999999999986 3 3899999
Q ss_pred EEEEccc
Q 023186 94 NCNLACL 100 (286)
Q Consensus 94 ~V~~a~~ 100 (286)
+|++++.
T Consensus 90 ~V~~S~~ 96 (100)
T 3r27_A 90 FVNYSTS 96 (100)
T ss_dssp EEEECSC
T ss_pred EEEeccc
Confidence 9999964
No 120
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=132.99 Aligned_cols=81 Identities=25% Similarity=0.385 Sum_probs=73.5
Q ss_pred CCCCccEEEEcCCCccC------CHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCC
Q 023186 18 GDTTYTKVFVGGLAWET------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDG 90 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~v------tee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~G 90 (286)
.+...++|||+|||+++ ++++|+++|++||.|.+|+|+ +.+++++|||||+|.+.++|++||+.++. .|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 45567899999999999 789999999999999999988 46899999999999999999999999975 5999
Q ss_pred e-eeEEEEccc
Q 023186 91 R-RANCNLACL 100 (286)
Q Consensus 91 r-~i~V~~a~~ 100 (286)
+ +|+|+++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999999853
No 121
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=126.21 Aligned_cols=77 Identities=26% Similarity=0.442 Sum_probs=69.7
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
..+...++|||+|||+++++++|+++|++||.|++|+|+++ ||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999999743 99999999999999999987 4599999999
Q ss_pred EEcccC
Q 023186 96 NLACLG 101 (286)
Q Consensus 96 ~~a~~~ 101 (286)
++++..
T Consensus 76 ~~a~~~ 81 (90)
T 2dnp_A 76 ELSTKG 81 (90)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999654
No 122
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=9.7e-18 Score=127.78 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=68.7
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
.....++|||+|||+++++++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++||+ ++ ..|+|+.|+|+
T Consensus 4 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 4 GSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp CCTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 34567899999999999999999999999999987 66776666 99999999999999999 86 56999999999
Q ss_pred EcccC
Q 023186 97 LACLG 101 (286)
Q Consensus 97 ~a~~~ 101 (286)
++..+
T Consensus 78 ~a~~~ 82 (94)
T 2e5g_A 78 PREQK 82 (94)
T ss_dssp CSCCS
T ss_pred ECCcC
Confidence 87543
No 123
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=6.3e-18 Score=143.46 Aligned_cols=86 Identities=28% Similarity=0.568 Sum_probs=75.7
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEc
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a 98 (286)
....++|||+|||+++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+.++..|+|+.|+|+++
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEec
Confidence 34568999999999999999999999999999999999999999999999999999999999998667899999999999
Q ss_pred ccCCCC
Q 023186 99 CLGVQR 104 (286)
Q Consensus 99 ~~~~~~ 104 (286)
.++.+.
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 765443
No 124
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=5e-18 Score=129.08 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=67.6
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEcc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a~ 99 (286)
...|||+||++.+||++|+++|++||+|++++++. +||||||+|.++++|++||+.||. .|.||.|+|++|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 67899999999999999999999999999999865 589999999999999999999985 5999999999984
No 125
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.5e-18 Score=132.45 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=69.8
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
.+...++|||+|||+++++++|+++|++||.|++|+|+ +++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44567899999999999999999999999999999987 457899999999999999999987 45999999999
Q ss_pred Eccc
Q 023186 97 LACL 100 (286)
Q Consensus 97 ~a~~ 100 (286)
+++.
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9854
No 126
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.7e-18 Score=129.11 Aligned_cols=78 Identities=29% Similarity=0.492 Sum_probs=70.8
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
....+.++|||+|||+++++++|+++|++||+|++|+|+++ ||||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34567789999999999999999999999999999999754 6899999999999999999997 5699999999
Q ss_pred EEccc
Q 023186 96 NLACL 100 (286)
Q Consensus 96 ~~a~~ 100 (286)
++++.
T Consensus 84 ~~a~~ 88 (99)
T 2cpj_A 84 RFACH 88 (99)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 99964
No 127
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=9.3e-18 Score=142.40 Aligned_cols=86 Identities=34% Similarity=0.541 Sum_probs=79.0
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEE
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V 95 (286)
+.+....++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+..+..|+|+.|+|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v 86 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 86 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence 44567889999999999999999999999999999999999999999999999999999999999998667799999999
Q ss_pred EEcccC
Q 023186 96 NLACLG 101 (286)
Q Consensus 96 ~~a~~~ 101 (286)
.++...
T Consensus 87 ~~~~~~ 92 (196)
T 1l3k_A 87 KRAVSR 92 (196)
T ss_dssp EECCC-
T ss_pred ecccCc
Confidence 998643
No 128
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=127.93 Aligned_cols=77 Identities=22% Similarity=0.426 Sum_probs=69.7
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccC--CeeeE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVID--GRRAN 94 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~--Gr~i~ 94 (286)
...+.++|||+|||+++++++|+++|++||+|++|+++++ +|||||+|.+.++|++||+.++ ..|+ +++|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999998754 6899999999999999999987 5688 99999
Q ss_pred EEEccc
Q 023186 95 CNLACL 100 (286)
Q Consensus 95 V~~a~~ 100 (286)
|++++.
T Consensus 87 V~~a~~ 92 (97)
T 1why_A 87 VDFAKS 92 (97)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999964
No 129
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=1.6e-18 Score=137.47 Aligned_cols=76 Identities=18% Similarity=0.212 Sum_probs=64.1
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCee----
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR---- 92 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~---- 92 (286)
.....++|||+|||++++|++|+++|++||+|++|+|+.| |||||+|++.++|++||+.|+ .+|+|++
T Consensus 12 ~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 12 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp -----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 3456799999999999999999999999999999999776 899999999999999999997 5699998
Q ss_pred -eEEEEccc
Q 023186 93 -ANCNLACL 100 (286)
Q Consensus 93 -i~V~~a~~ 100 (286)
|+|+.+..
T Consensus 85 ~i~v~~~~~ 93 (115)
T 3beg_B 85 YIRVKVDGP 93 (115)
T ss_dssp BCEEEECC-
T ss_pred EEEeccCCC
Confidence 66666543
No 130
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=9.2e-18 Score=146.16 Aligned_cols=82 Identities=27% Similarity=0.371 Sum_probs=75.1
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~ 97 (286)
..+.++|||+|||++++|++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++. .+.|+.|+|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 44568999999999999999999999999999999999999999999999999999999999999975 59999999998
Q ss_pred ccc
Q 023186 98 ACL 100 (286)
Q Consensus 98 a~~ 100 (286)
+..
T Consensus 92 ~~~ 94 (213)
T 4f02_A 92 SQR 94 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 853
No 131
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=5.2e-18 Score=134.58 Aligned_cols=78 Identities=13% Similarity=0.045 Sum_probs=70.0
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~ 96 (286)
....++|||+|||+++++++|+++|++|| +|+.++|+.+ +++|||||+|.+.++|++||+.++. +|+|++|+|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34578999999999999999999999999 9999988543 4789999999999999999999985 5999999999
Q ss_pred Eccc
Q 023186 97 LACL 100 (286)
Q Consensus 97 ~a~~ 100 (286)
+++.
T Consensus 101 ~a~~ 104 (111)
T 2jvr_A 101 RDDN 104 (111)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9853
No 132
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8e-18 Score=128.99 Aligned_cols=79 Identities=15% Similarity=0.245 Sum_probs=70.3
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
+....++|||+|||+++++++|+++|++||.|. ++++.+ +++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445688999999999999999999999999997 677654 578999999999999999999997 46999999999
Q ss_pred EcccC
Q 023186 97 LACLG 101 (286)
Q Consensus 97 ~a~~~ 101 (286)
+++.+
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99653
No 133
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-17 Score=126.51 Aligned_cols=77 Identities=27% Similarity=0.360 Sum_probs=68.7
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhc--CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeee
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQF--GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~f--G~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i 93 (286)
....+.++|||+|||+++++++|+++|++| |.|++|+++ +|||||+|.+.++|++||+.++. .|+|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567999999999999999999999999 999998874 56999999999999999999975 5999999
Q ss_pred EEEEcccC
Q 023186 94 NCNLACLG 101 (286)
Q Consensus 94 ~V~~a~~~ 101 (286)
+|++++.+
T Consensus 82 ~v~~a~~~ 89 (99)
T 2cpd_A 82 EVTLAKPV 89 (99)
T ss_dssp EEECCCCC
T ss_pred EEEECCCC
Confidence 99999643
No 134
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=3e-18 Score=127.16 Aligned_cols=72 Identities=24% Similarity=0.405 Sum_probs=65.9
Q ss_pred ccEEEEcCCCccC------CHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCe-ee
Q 023186 22 YTKVFVGGLAWET------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGR-RA 93 (286)
Q Consensus 22 ~~~LfVgnLp~~v------tee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr-~i 93 (286)
.++|||+|||+++ ++++|+++|++||+|.+|+|+ +.+++++|||||+|.+.++|++||+.++ ..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 789999999999999999987 4689999999999999999999999997 459999 88
Q ss_pred EE
Q 023186 94 NC 95 (286)
Q Consensus 94 ~V 95 (286)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 135
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-18 Score=138.60 Aligned_cols=81 Identities=22% Similarity=0.244 Sum_probs=73.1
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCE----EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEI----LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I----~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~ 94 (286)
....++|||+|||++++|++|+++|++||.| .+|+|++|+ ++++||||||+|.+.++|++||+..+..|++|.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 4567899999999999999999999999976 689999985 89999999999999999999999855669999999
Q ss_pred EEEccc
Q 023186 95 CNLACL 100 (286)
Q Consensus 95 V~~a~~ 100 (286)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998854
No 136
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=134.74 Aligned_cols=83 Identities=17% Similarity=0.172 Sum_probs=72.6
Q ss_pred CCCCCccEEEEcCCCccCCHHHHH----HHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCe
Q 023186 17 FGDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGR 91 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~----~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr 91 (286)
.+..+.++|||+||++++++++|+ ++|++||+|++|.+.. ++++||||||+|.+.++|++||+.++ ..|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 345667899999999999999876 6999999999988753 57899999999999999999999997 459999
Q ss_pred eeEEEEcccCC
Q 023186 92 RANCNLACLGV 102 (286)
Q Consensus 92 ~i~V~~a~~~~ 102 (286)
.|+|++++.+.
T Consensus 101 ~l~V~~a~~~~ 111 (127)
T 2a3j_A 101 PLVITFSETPQ 111 (127)
T ss_dssp CCEEEECCCCC
T ss_pred EEEEEEccCcc
Confidence 99999996543
No 137
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-18 Score=134.63 Aligned_cols=82 Identities=12% Similarity=0.143 Sum_probs=75.4
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCC---EEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCee
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~---I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~ 92 (286)
.+..+.++|||+|||+++++++|+++|++||. |.+|+|++|+. ++++|||||+|.+.++|++||+ ++ ..|+||.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34567899999999999999999999999998 89999999987 9999999999999999999999 65 5699999
Q ss_pred eEEEEccc
Q 023186 93 ANCNLACL 100 (286)
Q Consensus 93 i~V~~a~~ 100 (286)
|+|.++..
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99999864
No 138
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=1.7e-17 Score=129.92 Aligned_cols=74 Identities=27% Similarity=0.513 Sum_probs=67.6
Q ss_pred CCCccEEEEcCCCcc-CCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 19 DTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 19 d~~~~~LfVgnLp~~-vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
....++|||+|||++ +++++|+++|++||+|++|+| ++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344589999999999 999999999999999999988 57899999999999999999987 46999999999
Q ss_pred Eccc
Q 023186 97 LACL 100 (286)
Q Consensus 97 ~a~~ 100 (286)
+++.
T Consensus 96 ~a~~ 99 (110)
T 1wf1_A 96 MAGE 99 (110)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9954
No 139
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=8.2e-18 Score=128.81 Aligned_cols=76 Identities=18% Similarity=0.420 Sum_probs=67.6
Q ss_pred CCCCccEEEEcCCCc-cCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 18 GDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~-~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
...+.++|||+|||+ ++++++|+++|++||.|++|+|. +|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 356789999999998 99999999999999999999983 6899999999999999999987 4599999999
Q ss_pred EEcccC
Q 023186 96 NLACLG 101 (286)
Q Consensus 96 ~~a~~~ 101 (286)
++++..
T Consensus 78 ~~a~~~ 83 (96)
T 2kvi_A 78 EVSSSN 83 (96)
T ss_dssp EEEECC
T ss_pred EEcCcC
Confidence 999654
No 140
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.5e-18 Score=133.58 Aligned_cols=79 Identities=24% Similarity=0.371 Sum_probs=71.0
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCC---CCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT---GRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~t---g~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V 95 (286)
....++|||+|||+++++++|+++|++||+|+ +.++.++.+ +++||||||+|++.++|++||+.++ .++|+.|.|
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~ 82 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLC 82 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEe
Confidence 45678999999999999999999999999999 888888877 7999999999999999999999984 488888888
Q ss_pred EEcc
Q 023186 96 NLAC 99 (286)
Q Consensus 96 ~~a~ 99 (286)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 7654
No 141
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=3.1e-17 Score=126.26 Aligned_cols=76 Identities=20% Similarity=0.463 Sum_probs=68.1
Q ss_pred CCCCCccEEEEcCCCc-cCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeE
Q 023186 17 FGDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~-~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~ 94 (286)
......++|||+|||+ ++++++|+++|++||+|++|+|. +|||||+|.+.++|++||+.++. .|+|++|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455789999999998 99999999999999999999883 78999999999999999999975 59999999
Q ss_pred EEEccc
Q 023186 95 CNLACL 100 (286)
Q Consensus 95 V~~a~~ 100 (286)
|++++.
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 999854
No 142
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=1.7e-17 Score=141.65 Aligned_cols=83 Identities=29% Similarity=0.422 Sum_probs=76.7
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
.....++|||+||++++++++|+++|++||+|++|.|+.++ +++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 33457899999999999999999999999999999999998 89999999999999999999999997 46999999999
Q ss_pred EcccC
Q 023186 97 LACLG 101 (286)
Q Consensus 97 ~a~~~ 101 (286)
++...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 99654
No 143
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.7e-17 Score=123.46 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=68.4
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V 95 (286)
......++|||+|| ++++++|+++|++||+|++|+|. +++|||||+|.+.++|++||+.++. .|+|++|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999996 89999999999999999999984 4688999999999999999999975 599999999
Q ss_pred EEcccC
Q 023186 96 NLACLG 101 (286)
Q Consensus 96 ~~a~~~ 101 (286)
++++.+
T Consensus 82 ~~a~~~ 87 (97)
T 1x5p_A 82 NIARKQ 87 (97)
T ss_dssp ECCSSC
T ss_pred EECCCC
Confidence 999654
No 144
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=127.60 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=70.5
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V 95 (286)
..+...++|||+|||+++++++|+++|++||+|+.+ +.+++++|||||+|.+.++|++||+.++. .|+|++|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345678999999999999999999999999988766 34688999999999999999999999974 599999999
Q ss_pred EEccc
Q 023186 96 NLACL 100 (286)
Q Consensus 96 ~~a~~ 100 (286)
++++.
T Consensus 86 ~~a~~ 90 (96)
T 1fjc_A 86 YYTGE 90 (96)
T ss_dssp EECSS
T ss_pred EEcCC
Confidence 99954
No 145
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.4e-17 Score=135.12 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=70.3
Q ss_pred ccEEEEcCC----CccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCC----HHH----HHHHHH--hcCC-
Q 023186 22 YTKVFVGGL----AWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE----PEA----AMKACV--DAAP- 86 (286)
Q Consensus 22 ~~~LfVgnL----p~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~----~e~----A~~Ai~--~l~~- 86 (286)
.++|||+|| +++++|++|+++|++||+|.+|+++.|++|++++|||||+|.| .++ |.+||+ .++.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 378999999 9999999999999999999999999999999999999999996 333 889988 5664
Q ss_pred ccCCeeeEEEEccc
Q 023186 87 VIDGRRANCNLACL 100 (286)
Q Consensus 87 ~i~Gr~i~V~~a~~ 100 (286)
.|+|++|+|++.+.
T Consensus 82 ~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 82 FIMGFKFEVILNKH 95 (136)
T ss_dssp EETTEEEEEEECCT
T ss_pred eecCcEEEEEECcc
Confidence 59999999999853
No 146
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=1.2e-17 Score=127.36 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=72.1
Q ss_pred CCCCccEEEEcCCCccCCHHHHH----HHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCee
Q 023186 18 GDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRR 92 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~----~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~ 92 (286)
++.+.++|||+|||+++++++|+ ++|++||.|.+|+|+. +++++|||||+|.+.++|++||+.++. .|+|++
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 45568999999999999999999 9999999999998874 578899999999999999999999874 599999
Q ss_pred eEEEEcccC
Q 023186 93 ANCNLACLG 101 (286)
Q Consensus 93 i~V~~a~~~ 101 (286)
|+|++++..
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 999999654
No 147
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=3.1e-17 Score=129.20 Aligned_cols=81 Identities=15% Similarity=0.186 Sum_probs=72.9
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~ 97 (286)
....++|||+|||+++++++|+++|++||.|.+|.|+.+ ++++|||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999876 4569999999999999999999987 569999999999
Q ss_pred cccCC
Q 023186 98 ACLGV 102 (286)
Q Consensus 98 a~~~~ 102 (286)
+....
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 97543
No 148
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.71 E-value=5.9e-17 Score=133.39 Aligned_cols=80 Identities=29% Similarity=0.421 Sum_probs=75.3
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEccc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLACL 100 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a~~ 100 (286)
.++|||+|||+++++++|+++|++||+|.++++++++.+++++|||||+|.+.++|++||+.++. .|.|++|+|+++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999999999999999999999999999999874 59999999999864
Q ss_pred C
Q 023186 101 G 101 (286)
Q Consensus 101 ~ 101 (286)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 3
No 149
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.71 E-value=5.5e-17 Score=134.13 Aligned_cols=81 Identities=23% Similarity=0.328 Sum_probs=75.9
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~ 99 (286)
..++|||+|||+++++++|+++|++||+|++|++++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999887 45999999999986
Q ss_pred cC
Q 023186 100 LG 101 (286)
Q Consensus 100 ~~ 101 (286)
..
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 150
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=2.4e-17 Score=125.12 Aligned_cols=78 Identities=24% Similarity=0.426 Sum_probs=63.1
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~ 97 (286)
.+...++|||+|||++++|++|+++|++||+|++|+|+++ +||||||+|++.++|+++.. ....+++++|+|++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEEE
Confidence 4567899999999999999999999999999999999875 78999999999999984322 22237799999999
Q ss_pred cccC
Q 023186 98 ACLG 101 (286)
Q Consensus 98 a~~~ 101 (286)
+.++
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 9654
No 151
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.1e-17 Score=129.36 Aligned_cols=78 Identities=22% Similarity=0.218 Sum_probs=70.2
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~ 97 (286)
+...++|||+|||+++++++|+++|++||.|++|.|+. +++||||+|.+.++|++||+.|+ ..|+|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44578999999999999999999999999999998864 57899999999999999999997 469999999999
Q ss_pred cccCC
Q 023186 98 ACLGV 102 (286)
Q Consensus 98 a~~~~ 102 (286)
++...
T Consensus 81 a~~~~ 85 (111)
T 1whx_A 81 APIGV 85 (111)
T ss_dssp EETTT
T ss_pred CCCCc
Confidence 97543
No 152
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.70 E-value=4.3e-17 Score=134.48 Aligned_cols=79 Identities=25% Similarity=0.390 Sum_probs=72.3
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
......++|||+|||+++++++|+++|++||+|++|+|+++ ++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 44567899999999999999999999999999999999876 58999999999999999999987 4699999999
Q ss_pred EEccc
Q 023186 96 NLACL 100 (286)
Q Consensus 96 ~~a~~ 100 (286)
++++.
T Consensus 143 ~~a~~ 147 (150)
T 2i2y_A 143 ELSNG 147 (150)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99964
No 153
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=9.3e-17 Score=132.08 Aligned_cols=83 Identities=31% Similarity=0.482 Sum_probs=77.5
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
......++|||+|||.++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 345568899999999999999999999999999999999999999999999999999999999999997 5699999999
Q ss_pred EEcc
Q 023186 96 NLAC 99 (286)
Q Consensus 96 ~~a~ 99 (286)
++|+
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9984
No 154
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=124.22 Aligned_cols=80 Identities=16% Similarity=0.096 Sum_probs=71.1
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEE-EEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v-~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
.....++|||+|||+++++++|+++|++||.|++| .|+.++.+++ |||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34457899999999999999999999999999999 5888876554 9999999999999999997 5699999999
Q ss_pred EEcccC
Q 023186 96 NLACLG 101 (286)
Q Consensus 96 ~~a~~~ 101 (286)
++++++
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 999654
No 155
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=7.5e-17 Score=138.82 Aligned_cols=82 Identities=22% Similarity=0.483 Sum_probs=76.9
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a 98 (286)
...++|||+||+.++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 456899999999999999999999999999999999999999999999999999999999999997 5699999999999
Q ss_pred ccC
Q 023186 99 CLG 101 (286)
Q Consensus 99 ~~~ 101 (286)
+..
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 654
No 156
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-17 Score=125.65 Aligned_cols=76 Identities=21% Similarity=0.458 Sum_probs=65.6
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a~ 99 (286)
...++|||+|||++++|++|+++|++||+|++|+|+++ +||||||+|.+.++|++|+.. ...+++++|+|++++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 45799999999999999999999999999999999865 689999999999999865443 234799999999986
Q ss_pred cC
Q 023186 100 LG 101 (286)
Q Consensus 100 ~~ 101 (286)
++
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 157
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=1.2e-16 Score=134.88 Aligned_cols=82 Identities=16% Similarity=0.307 Sum_probs=71.8
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCC--eee
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDG--RRA 93 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~G--r~i 93 (286)
....+..+|||+||+++++|++|+++|++||+|++|+|..+ +++|||||+|+|.++|++|++.|+. .|.+ ++|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 34567789999999999999999999999999999998754 2578999999999999999999975 5855 999
Q ss_pred EEEEcccCC
Q 023186 94 NCNLACLGV 102 (286)
Q Consensus 94 ~V~~a~~~~ 102 (286)
+|++++.+.
T Consensus 117 ~V~~Ak~~~ 125 (164)
T 1sjr_A 117 RIDFSKLTS 125 (164)
T ss_dssp EEEECSSSS
T ss_pred EEEEecCCc
Confidence 999997653
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=1.1e-16 Score=135.91 Aligned_cols=83 Identities=23% Similarity=0.410 Sum_probs=77.8
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~ 97 (286)
....++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3567999999999999999999999999999999999999999999999999999999999999987 459999999999
Q ss_pred cccC
Q 023186 98 ACLG 101 (286)
Q Consensus 98 a~~~ 101 (286)
++++
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9654
No 159
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=4.5e-17 Score=122.70 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=67.9
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a 98 (286)
...++|||+|||+++++++|+++|++| +|++++|. ++||||||+|.+.++|++||+.++. .|+|++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 457899999999999999999999999 99999884 5789999999999999999999975 599999999999
Q ss_pred cc
Q 023186 99 CL 100 (286)
Q Consensus 99 ~~ 100 (286)
+.
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 160
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=136.98 Aligned_cols=87 Identities=22% Similarity=0.312 Sum_probs=72.7
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEE--E---eecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCe
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAV--V---ITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGR 91 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~--i---~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr 91 (286)
.....++|||+|||+++++++|+++|++||.|.+|. + +....+++++|||||+|.+.++|++||+.++. .|+|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 355678999999999999999999999999987751 1 11124689999999999999999999999975 59999
Q ss_pred eeEEEEcccCCCC
Q 023186 92 RANCNLACLGVQR 104 (286)
Q Consensus 92 ~i~V~~a~~~~~~ 104 (286)
.|+|++++....+
T Consensus 121 ~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 PMVVQFARSARPK 133 (143)
T ss_dssp ECEEEECCCSCC-
T ss_pred EEEEEECCCCCCc
Confidence 9999999765433
No 161
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=1.5e-16 Score=132.14 Aligned_cols=80 Identities=23% Similarity=0.383 Sum_probs=75.4
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a 98 (286)
...++|||+|||+++++++|+++|++||+|++++|+.++.+++++|||||+|.+.++|++|++.++ ..|+|++|+|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 447899999999999999999999999999999999999999999999999999999999999987 5699999999987
Q ss_pred c
Q 023186 99 C 99 (286)
Q Consensus 99 ~ 99 (286)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 162
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=126.00 Aligned_cols=77 Identities=18% Similarity=0.243 Sum_probs=67.6
Q ss_pred CCCCccEEEE--cCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-cc-----C
Q 023186 18 GDTTYTKVFV--GGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI-----D 89 (286)
Q Consensus 18 ~d~~~~~LfV--gnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i-----~ 89 (286)
.+.+.++||| +||+++++|++|+++|++||+|++|.|+.+ ||||||+|++.++|++||+.||. +| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 4556789999 779999999999999999999999988643 78999999999999999999974 46 6
Q ss_pred CeeeEEEEccc
Q 023186 90 GRRANCNLACL 100 (286)
Q Consensus 90 Gr~i~V~~a~~ 100 (286)
++.|.|.+++.
T Consensus 95 g~~l~v~~a~~ 105 (114)
T 2cq2_A 95 KITLYLNFVEK 105 (114)
T ss_dssp EEECEEEEESC
T ss_pred CcEEEEEeccc
Confidence 88999999853
No 163
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=9e-17 Score=132.90 Aligned_cols=79 Identities=30% Similarity=0.727 Sum_probs=73.9
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEccc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a~~ 100 (286)
+.++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+. ...|+|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 578999999999999999999999999999999999999999999999999999999999996 4579999999988754
No 164
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=2.6e-16 Score=135.97 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=74.7
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEccc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a~~ 100 (286)
..++|||+|||+++++++|+++|++||.|.+|+|++++ +++++|||||+|++.++|++||+.++..|+|++|+|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 45899999999999999999999999999999999987 48999999999999999999999888889999999999864
Q ss_pred CC
Q 023186 101 GV 102 (286)
Q Consensus 101 ~~ 102 (286)
-.
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 33
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=1.9e-16 Score=136.21 Aligned_cols=81 Identities=27% Similarity=0.452 Sum_probs=72.6
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEc
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a 98 (286)
...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 456899999999999999999999999999999999999999999999999999999999999886 5699999999877
Q ss_pred cc
Q 023186 99 CL 100 (286)
Q Consensus 99 ~~ 100 (286)
..
T Consensus 106 ~~ 107 (216)
T 2qfj_A 106 SN 107 (216)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 166
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=8.4e-17 Score=133.09 Aligned_cols=80 Identities=31% Similarity=0.609 Sum_probs=74.5
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~ 99 (286)
..++|||+|||.++++++|+++|++||.|++++|+.|+.+++++|||||+|.+.++|++||+ ++ ..|+|++|+|+++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46799999999999999999999999999999999999999999999999999999999998 55 56999999999996
Q ss_pred cC
Q 023186 100 LG 101 (286)
Q Consensus 100 ~~ 101 (286)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.66 E-value=1.4e-16 Score=138.67 Aligned_cols=80 Identities=28% Similarity=0.420 Sum_probs=73.3
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~ 99 (286)
..++|||+||++++++++|+++|++||.|++|+|++|+ +.+||||||+|.+.++|++||+.|| .+|+|++|+|++++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999985 4579999999999999999999997 56999999999997
Q ss_pred cCC
Q 023186 100 LGV 102 (286)
Q Consensus 100 ~~~ 102 (286)
.+.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 644
No 168
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=4.4e-16 Score=127.99 Aligned_cols=78 Identities=22% Similarity=0.364 Sum_probs=71.4
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcccC
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACLG 101 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~~~ 101 (286)
++|||+|||+++++++|+++|++||+|.+|+|+.++. ++++|||||+|.+.++|++||+.++ ..|.|+.|+|+++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999974 7799999999999999999999887 4599999999998543
No 169
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=4.3e-16 Score=116.26 Aligned_cols=72 Identities=19% Similarity=0.428 Sum_probs=65.2
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhc----C-------CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-C
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P 86 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~f----G-------~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~ 86 (286)
+.+.++|||+|||+++++++|+++|++| | +|.++++.++ ||||||+|.+.++|++|| .++ .
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4568999999999999999999999999 8 9999998755 789999999999999999 887 4
Q ss_pred ccCCeeeEEEE
Q 023186 87 VIDGRRANCNL 97 (286)
Q Consensus 87 ~i~Gr~i~V~~ 97 (286)
.|+|++|+|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 69999999973
No 170
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=7e-16 Score=127.43 Aligned_cols=81 Identities=25% Similarity=0.477 Sum_probs=75.0
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCC--eeeE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDG--RRAN 94 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~G--r~i~ 94 (286)
.....++|||+|||.++++++|+++|++||.|+++++++++.+++++|||||+|.+.++|++|++.++. .|+| ++|+
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999974 5877 9999
Q ss_pred EEEc
Q 023186 95 CNLA 98 (286)
Q Consensus 95 V~~a 98 (286)
|++|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 171
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=1.2e-15 Score=124.34 Aligned_cols=80 Identities=16% Similarity=0.360 Sum_probs=70.0
Q ss_pred CCCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHhcCC-ccCC--ee
Q 023186 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGY-GFVTFREPEAAMKACVDAAP-VIDG--RR 92 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGf-gFV~F~~~e~A~~Ai~~l~~-~i~G--r~ 92 (286)
....+..+|||+||++.+|+++|+++|++||+|++|+|+.+ .+|| |||+|++.++|++||+.|+. .|.+ ++
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 34467889999999999999999999999999999988764 3688 99999999999999999985 5887 89
Q ss_pred eEEEEcccC
Q 023186 93 ANCNLACLG 101 (286)
Q Consensus 93 i~V~~a~~~ 101 (286)
|+|++++..
T Consensus 98 LrI~~ak~~ 106 (130)
T 3zzy_A 98 LRIDFSKLT 106 (130)
T ss_dssp EEEEECSCS
T ss_pred EEEEecCCC
Confidence 999999754
No 172
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.64 E-value=5.6e-16 Score=124.25 Aligned_cols=76 Identities=18% Similarity=0.307 Sum_probs=68.1
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
.....++|||+|| ++++++|+++|++||+|++|+|. +++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4456899999996 79999999999999999999985 468999999999999999999987 46999999999
Q ss_pred EcccC
Q 023186 97 LACLG 101 (286)
Q Consensus 97 ~a~~~ 101 (286)
+++..
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 99654
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=9.3e-16 Score=127.32 Aligned_cols=80 Identities=28% Similarity=0.370 Sum_probs=71.3
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHhcCC-ccC---CeeeE
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATG--RSKGYGFVTFREPEAAMKACVDAAP-VID---GRRAN 94 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg--~skGfgFV~F~~~e~A~~Ai~~l~~-~i~---Gr~i~ 94 (286)
+.++|||+|||+++++++|+++|++||+|++|+|++++.++ +++|||||+|.+.++|++||+.++. .+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999999887 8999999999999999999999974 343 56777
Q ss_pred EEEccc
Q 023186 95 CNLACL 100 (286)
Q Consensus 95 V~~a~~ 100 (286)
+..+..
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 777654
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=1.2e-15 Score=125.50 Aligned_cols=80 Identities=25% Similarity=0.464 Sum_probs=73.1
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCee--eEE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR--ANC 95 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~--i~V 95 (286)
....++|||+|||.++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|++|++.++ ..|+|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 3467899999999999999999999999999999999999999999999999999999999999997 4599975 777
Q ss_pred EEc
Q 023186 96 NLA 98 (286)
Q Consensus 96 ~~a 98 (286)
++|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 764
No 175
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=2.2e-15 Score=121.74 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=66.4
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccE-EEEEeCCHHHHHHHHHhcCC-ccCC--eeeEE
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGY-GFVTFREPEAAMKACVDAAP-VIDG--RRANC 95 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGf-gFV~F~~~e~A~~Ai~~l~~-~i~G--r~i~V 95 (286)
.....|||+||++.+++++|+++|++||+|++|+|+. + +|| |||+|++.++|++||+.|+. .|.| +.|+|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 4456788999999999999999999999999999865 2 286 99999999999999999974 5877 68999
Q ss_pred EEcccC
Q 023186 96 NLACLG 101 (286)
Q Consensus 96 ~~a~~~ 101 (286)
++++++
T Consensus 97 ~~Ak~~ 102 (124)
T 2e5i_A 97 EYARPT 102 (124)
T ss_dssp ECCSCS
T ss_pred EEecCC
Confidence 999754
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=2.1e-15 Score=125.13 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=71.9
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccC---CeeeE
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VID---GRRAN 94 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~---Gr~i~ 94 (286)
....++|||+|||+++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.++. .+. +++|+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 4467899999999999999999999999999999999996 589999999999999999999999974 444 49999
Q ss_pred EEEc
Q 023186 95 CNLA 98 (286)
Q Consensus 95 V~~a 98 (286)
|++|
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=1.9e-15 Score=136.04 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=74.0
Q ss_pred CCCCccEEEEcCCCccCCHHHHH----HHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCee
Q 023186 18 GDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRR 92 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~----~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~ 92 (286)
++...++|||+|||+++++++|+ ++|++||+|++|+|++ ++++||||||+|.+.++|++||+.++. .|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 46678999999999999999977 8999999999999876 678999999999999999999999975 599999
Q ss_pred eEEEEcccCC
Q 023186 93 ANCNLACLGV 102 (286)
Q Consensus 93 i~V~~a~~~~ 102 (286)
|+|++++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999986543
No 178
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=2.1e-15 Score=131.28 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=69.5
Q ss_pred CccEEEEcCCC-ccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEc
Q 023186 21 TYTKVFVGGLA-WETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (286)
Q Consensus 21 ~~~~LfVgnLp-~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a 98 (286)
+.++|||+||+ +++++++|+++|++||+|++|+|+++ +||||||+|.+.++|++||+.||. .|.|++|+|+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 89999999999999999999999876 379999999999999999999974 599999999998
Q ss_pred ccC
Q 023186 99 CLG 101 (286)
Q Consensus 99 ~~~ 101 (286)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 643
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=4e-15 Score=114.28 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=62.5
Q ss_pred ccE-EEEcCCCccCCHHH----HHHHHHhc-CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeE
Q 023186 22 YTK-VFVGGLAWETQKET----MEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (286)
Q Consensus 22 ~~~-LfVgnLp~~vtee~----L~~~F~~f-G~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~ 94 (286)
..+ |||+|||+++++++ |+++|++| |+|.+| |+ |+|||+|.+.++|++|++.|+. .|.||.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 444 99999999999988 55899999 599988 33 9999999999999999999975 59999999
Q ss_pred EEEcccCCC
Q 023186 95 CNLACLGVQ 103 (286)
Q Consensus 95 V~~a~~~~~ 103 (286)
|++|+.+.+
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999975443
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=4.4e-15 Score=116.38 Aligned_cols=82 Identities=20% Similarity=0.245 Sum_probs=71.6
Q ss_pred CCCccEEEEcCCCc-----cCCHHHHHHHHHhcCCEEEEEEeecCCC-CCcccEEEEEeCCHHHHHHHHHhcCC-ccCCe
Q 023186 19 DTTYTKVFVGGLAW-----ETQKETMEKYFEQFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACVDAAP-VIDGR 91 (286)
Q Consensus 19 d~~~~~LfVgnLp~-----~vtee~L~~~F~~fG~I~~v~i~~dk~t-g~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr 91 (286)
....+.|+|.||-. +-++++|+++|++||+|++|+|++++.+ ++++||+||+|.+.++|++|++.||. .|+||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999962 2368999999999999999999998764 68999999999999999999999985 59999
Q ss_pred eeEEEEccc
Q 023186 92 RANCNLACL 100 (286)
Q Consensus 92 ~i~V~~a~~ 100 (286)
.|+|+++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999854
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=4.4e-15 Score=123.95 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=70.4
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
.+...++|||+|||.++++++|+++|++||+|..+ ..+++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999988765 5678999999999999999999999997 56999999999
Q ss_pred Eccc
Q 023186 97 LACL 100 (286)
Q Consensus 97 ~a~~ 100 (286)
++++
T Consensus 170 ~a~~ 173 (175)
T 1fje_B 170 YTGE 173 (175)
T ss_dssp ECSS
T ss_pred ecCC
Confidence 9964
No 182
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.57 E-value=5e-15 Score=132.34 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=68.9
Q ss_pred CCCccEEEEcCCCccC---------CHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-Ccc
Q 023186 19 DTTYTKVFVGGLAWET---------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI 88 (286)
Q Consensus 19 d~~~~~LfVgnLp~~v---------tee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i 88 (286)
+...++|||+||+.++ +|++|+++|++||+|++|+|+. +||||||+|.++++|++|++.|+ ..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 5678999999999998 7999999999999999999985 47899999999999999999997 457
Q ss_pred ------------CCeeeEEEEcccC
Q 023186 89 ------------DGRRANCNLACLG 101 (286)
Q Consensus 89 ------------~Gr~i~V~~a~~~ 101 (286)
+|+.|.|++|+..
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999653
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.56 E-value=1.1e-14 Score=127.99 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=71.4
Q ss_pred CCCccEEEEcCCCc-cCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 19 DTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 19 d~~~~~LfVgnLp~-~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
....++|||+|||+ ++++++|+++|++||+|++|+|++++ +|||||+|.+.++|++||+.++ ..|.|+.|+|+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35678999999999 99999999999999999999999875 7899999999999999999887 46999999999
Q ss_pred EcccC
Q 023186 97 LACLG 101 (286)
Q Consensus 97 ~a~~~ 101 (286)
+++..
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 98654
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.56 E-value=2e-14 Score=129.44 Aligned_cols=81 Identities=23% Similarity=0.379 Sum_probs=76.0
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~ 99 (286)
..++|||+|||+++++++|+++|++||.|.+++|+.++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46799999999999999999999999999999999999999999999999999999999999987 45999999999996
Q ss_pred cC
Q 023186 100 LG 101 (286)
Q Consensus 100 ~~ 101 (286)
..
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=1.4e-14 Score=130.23 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=70.1
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccC-CeeeEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VID-GRRANC 95 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~-Gr~i~V 95 (286)
.....++|||+||++++++++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+.++. .|+ |++|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 44567899999999999999999999999999999998764 58999999999999999999975 588 999999
Q ss_pred EEcc
Q 023186 96 NLAC 99 (286)
Q Consensus 96 ~~a~ 99 (286)
++++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9984
No 186
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=3.2e-14 Score=111.99 Aligned_cols=81 Identities=19% Similarity=0.217 Sum_probs=68.4
Q ss_pred CCCCCccEEEEcCCCccCC-----------HHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 023186 17 FGDTTYTKVFVGGLAWETQ-----------KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~vt-----------ee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~ 85 (286)
......++|+|.||-...+ +++|+++|++||+|++|.| .|+ .++|||||+|.+.++|++||+.++
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3556789999999944332 6899999999999999965 554 379999999999999999999998
Q ss_pred C-ccCCeeeEEEEcccC
Q 023186 86 P-VIDGRRANCNLACLG 101 (286)
Q Consensus 86 ~-~i~Gr~i~V~~a~~~ 101 (286)
. .|+|++|+|+++...
T Consensus 86 g~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGT 102 (112)
T ss_dssp TCEETTEECEEEECCSC
T ss_pred CCEECCcEEEEEEeCCC
Confidence 4 599999999999654
No 187
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=1.5e-15 Score=126.76 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=72.0
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
+....++|||+|||+++++++|+++|++||.|.. .++.+..+++++|||||+|.+.++|++||+ ++ ..|.|+.|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 5667899999999999999999999999998876 455666678999999999999999999995 75 56999999999
Q ss_pred EcccC
Q 023186 97 LACLG 101 (286)
Q Consensus 97 ~a~~~ 101 (286)
++...
T Consensus 87 ~~~~~ 91 (175)
T 1fje_B 87 KPKGR 91 (175)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98653
No 188
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.55 E-value=9.4e-15 Score=132.07 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=73.4
Q ss_pred CCCccEEEEcCCCcc-CCHHHHHHHHHhcCCEEEEEEeecCC-CCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEE
Q 023186 19 DTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKA-TGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (286)
Q Consensus 19 d~~~~~LfVgnLp~~-vtee~L~~~F~~fG~I~~v~i~~dk~-tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V 95 (286)
....++|||+|||++ +++++|+++|++||.|++|+|+.++. |++++|||||+|.+.++|++|| .++. .|+|++|+|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 346789999999999 99999999999999999999999887 6999999999999999999999 8875 599999999
Q ss_pred EEccc
Q 023186 96 NLACL 100 (286)
Q Consensus 96 ~~a~~ 100 (286)
.++++
T Consensus 286 ~~a~~ 290 (292)
T 2ghp_A 286 SLADK 290 (292)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99964
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=1.4e-14 Score=130.43 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=76.6
Q ss_pred CCCCccEEEEcCCCccC-CHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEE
Q 023186 18 GDTTYTKVFVGGLAWET-QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~v-tee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V 95 (286)
.....++|||+|||+++ ++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 44567899999999995 999999999999999999999987 79999999999999999999999997 5699999999
Q ss_pred EEcccCC
Q 023186 96 NLACLGV 102 (286)
Q Consensus 96 ~~a~~~~ 102 (286)
++++++.
T Consensus 259 ~~a~~~~ 265 (284)
T 3smz_A 259 SFCAPGP 265 (284)
T ss_dssp EECCSSS
T ss_pred EEecCCC
Confidence 9996544
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=123.48 Aligned_cols=75 Identities=15% Similarity=0.219 Sum_probs=69.4
Q ss_pred ccEEEEcCCCc-cCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEcc
Q 023186 22 YTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (286)
Q Consensus 22 ~~~LfVgnLp~-~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a~ 99 (286)
.++|||+|||+ ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|++||+.++ ..|+|+.|+|++++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998875 7899999999999999999887 45999999999986
Q ss_pred cC
Q 023186 100 LG 101 (286)
Q Consensus 100 ~~ 101 (286)
..
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 191
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.9e-13 Score=106.20 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=64.2
Q ss_pred CCCccEEEEcCCC-------ccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCe
Q 023186 19 DTTYTKVFVGGLA-------WETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (286)
Q Consensus 19 d~~~~~LfVgnLp-------~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr 91 (286)
+...++|-|.-.. .+++|++|+++|++||+|++|.|+ +++||||||+|++.++|++||+.++ .+.++
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-~~~g~ 80 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-GLVDN 80 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-BCSSS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-CCCCC
Confidence 3346677776544 458999999999999999999987 3689999999999999999999854 47899
Q ss_pred eeEEEEcccC
Q 023186 92 RANCNLACLG 101 (286)
Q Consensus 92 ~i~V~~a~~~ 101 (286)
.|+|++++..
T Consensus 81 ~l~V~~a~~~ 90 (100)
T 2d9o_A 81 PLKISWLEGQ 90 (100)
T ss_dssp BCEEECSSCC
T ss_pred eEEEEEccCC
Confidence 9999998643
No 192
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.51 E-value=5.3e-14 Score=110.11 Aligned_cols=82 Identities=12% Similarity=0.013 Sum_probs=70.4
Q ss_pred CCCccEEEEcCC--CccCC--------HHHHHHHHHhcCCEEEEEEeecCCC--CCcccEEEEEeCCHHHHHHHHHhcCC
Q 023186 19 DTTYTKVFVGGL--AWETQ--------KETMEKYFEQFGEILEAVVITDKAT--GRSKGYGFVTFREPEAAMKACVDAAP 86 (286)
Q Consensus 19 d~~~~~LfVgnL--p~~vt--------ee~L~~~F~~fG~I~~v~i~~dk~t--g~skGfgFV~F~~~e~A~~Ai~~l~~ 86 (286)
..+.+.|.|.|+ +.++. +++|+++|++||+|++|+|++++.+ ++++||+||+|.+.++|++||+.||.
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 356788999998 44443 3689999999999999999998765 47899999999999999999999985
Q ss_pred -ccCCeeeEEEEccc
Q 023186 87 -VIDGRRANCNLACL 100 (286)
Q Consensus 87 -~i~Gr~i~V~~a~~ 100 (286)
.++||.|+|++...
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 59999999998743
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=5.1e-14 Score=126.11 Aligned_cols=81 Identities=28% Similarity=0.292 Sum_probs=73.1
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc-CCc-cC---CeeeEE
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA-APV-ID---GRRANC 95 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l-~~~-i~---Gr~i~V 95 (286)
..++|||+|||.++++++|+++|++||.|++|+|+.| .+++++|||||+|.+.++|.+||+.+ +.. +. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999999 58999999999999999999999999 443 43 999999
Q ss_pred EEcccCC
Q 023186 96 NLACLGV 102 (286)
Q Consensus 96 ~~a~~~~ 102 (286)
+++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9987543
No 194
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=2.2e-14 Score=112.10 Aligned_cols=71 Identities=27% Similarity=0.416 Sum_probs=62.9
Q ss_pred EcCCCccCCHHHHHHHH------------HhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeee
Q 023186 27 VGGLAWETQKETMEKYF------------EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (286)
Q Consensus 27 VgnLp~~vtee~L~~~F------------~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i 93 (286)
+.+|++++++++|+++| ++||+|++|+|++++. ++++|||||+|.+.++|++|++.+|. .|+||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67788888888777666 9999999999998864 78999999999999999999999974 5999999
Q ss_pred EEEEc
Q 023186 94 NCNLA 98 (286)
Q Consensus 94 ~V~~a 98 (286)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.49 E-value=3.8e-14 Score=123.33 Aligned_cols=76 Identities=11% Similarity=0.107 Sum_probs=66.1
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCE--EEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCe----ee
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEI--LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGR----RA 93 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I--~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr----~i 93 (286)
+.++|||+|||++++|++|+++|++||.| ++|+|+.++ ++++|||||+|++.++|++||+.||. +|+++ .+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 45789999999999999999999999999 899988875 55679999999999999999999985 58776 46
Q ss_pred EEEEc
Q 023186 94 NCNLA 98 (286)
Q Consensus 94 ~V~~a 98 (286)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66654
No 196
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=1e-13 Score=110.91 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=69.4
Q ss_pred CccEEEEcCCC--ccC---CHHHHHHHHHhcCCEEEEEEeecCC----CCCcccEEEEEeCCHHHHHHHHHhcCC-ccCC
Q 023186 21 TYTKVFVGGLA--WET---QKETMEKYFEQFGEILEAVVITDKA----TGRSKGYGFVTFREPEAAMKACVDAAP-VIDG 90 (286)
Q Consensus 21 ~~~~LfVgnLp--~~v---tee~L~~~F~~fG~I~~v~i~~dk~----tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~G 90 (286)
+.+.|+|.|+- .++ -+++|+++|++||+|++|+|++++. +++++||+||+|.+.++|++||+.||. .++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57899999983 223 3689999999999999999999865 467889999999999999999999985 5999
Q ss_pred eeeEEEEccc
Q 023186 91 RRANCNLACL 100 (286)
Q Consensus 91 r~i~V~~a~~ 100 (286)
|.|+|++...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998853
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.48 E-value=7.3e-14 Score=126.17 Aligned_cols=81 Identities=9% Similarity=0.095 Sum_probs=68.6
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEEEc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~~a 98 (286)
..++|||+|||+++++++|+++|++|| .|.+|+|+.++. ++++|||||+|.+.++|++||+.++ ..|+|+.|+|+++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999999876 8899999999999999999999887 5699999999998
Q ss_pred ccCC
Q 023186 99 CLGV 102 (286)
Q Consensus 99 ~~~~ 102 (286)
.+..
T Consensus 195 ~~~~ 198 (292)
T 2ghp_A 195 NPLE 198 (292)
T ss_dssp CCC-
T ss_pred CCCc
Confidence 6543
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.47 E-value=1.6e-13 Score=113.71 Aligned_cols=73 Identities=18% Similarity=0.410 Sum_probs=63.9
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhc----C-------CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-Ccc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI 88 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~f----G-------~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i 88 (286)
+.++|||+|||+++++++|+++|++| | .|.++++. +++|||||+|.+.++|++|| .++ ..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 57899999999999999999999999 6 67777664 34789999999999999999 776 569
Q ss_pred CCeeeEEEEccc
Q 023186 89 DGRRANCNLACL 100 (286)
Q Consensus 89 ~Gr~i~V~~a~~ 100 (286)
+|+.|+|+++..
T Consensus 76 ~g~~i~v~~~~~ 87 (172)
T 2g4b_A 76 QGQSLKIRRPHD 87 (172)
T ss_dssp TTEECEEECCSS
T ss_pred cCceeeecCCcc
Confidence 999999998743
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.47 E-value=8.4e-14 Score=118.67 Aligned_cols=76 Identities=9% Similarity=0.163 Sum_probs=68.9
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccC-CeeeEEE
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVID-GRRANCN 96 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~-Gr~i~V~ 96 (286)
.+.++|||+|||+++++++|+++|++|| .|++|+|+.+ .+|+|||+|.+.++|++||+.++ ..|+ |++|+|+
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478999999999999999999999999 9999998764 27899999999999999999997 4588 9999999
Q ss_pred Eccc
Q 023186 97 LACL 100 (286)
Q Consensus 97 ~a~~ 100 (286)
++++
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9864
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=1.2e-13 Score=123.71 Aligned_cols=76 Identities=25% Similarity=0.466 Sum_probs=68.9
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCeeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr~i~V~ 96 (286)
.....++|||+|||+++|+++|+++|++||.|.+|+|.++ +|||||+|.+.++|++||+.++ ..|.|+.|+|+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3456789999999999999999999999999999999644 7899999999999999999887 45999999999
Q ss_pred Ecc
Q 023186 97 LAC 99 (286)
Q Consensus 97 ~a~ 99 (286)
++.
T Consensus 92 ~a~ 94 (261)
T 3sde_A 92 FAT 94 (261)
T ss_dssp ECC
T ss_pred ecc
Confidence 985
No 201
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.4e-13 Score=120.78 Aligned_cols=75 Identities=9% Similarity=0.165 Sum_probs=68.3
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccC-CeeeEEEE
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVID-GRRANCNL 97 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~-Gr~i~V~~ 97 (286)
+.++|||+|||+++++++|+++|++|| +|++|+|+.+ .+|||||+|.+.++|++||+.++ ..|+ |++|+|++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 9999998653 37899999999999999999997 4588 99999999
Q ss_pred ccc
Q 023186 98 ACL 100 (286)
Q Consensus 98 a~~ 100 (286)
+++
T Consensus 225 a~~ 227 (229)
T 2adc_A 225 SKS 227 (229)
T ss_dssp CSS
T ss_pred ecC
Confidence 964
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=1.7e-13 Score=116.07 Aligned_cols=74 Identities=18% Similarity=0.396 Sum_probs=63.1
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhc----C-------CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-cc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI 88 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~f----G-------~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i 88 (286)
..++|||+|||+++++++|+++|++| | .|.++++ ++++|||||+|.+.++|++|| .++. .|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 5555555 456899999999999999999 7764 59
Q ss_pred CCeeeEEEEcccC
Q 023186 89 DGRRANCNLACLG 101 (286)
Q Consensus 89 ~Gr~i~V~~a~~~ 101 (286)
+|+.|+|+++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999988543
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.34 E-value=2.1e-12 Score=120.96 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=62.8
Q ss_pred CCCCccEEEEcC--CCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-cc---CCe
Q 023186 18 GDTTYTKVFVGG--LAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI---DGR 91 (286)
Q Consensus 18 ~d~~~~~LfVgn--Lp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i---~Gr 91 (286)
.+.+.++|||+| |+.++||++|+++|++||+|++|.+.. +||||||+|++.++|++||+.||. ++ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 466788999999 578999999999999999999987743 479999999999999999999984 34 345
Q ss_pred --eeEEEEc
Q 023186 92 --RANCNLA 98 (286)
Q Consensus 92 --~i~V~~a 98 (286)
.|.|+.+
T Consensus 88 ~~~ly~~~~ 96 (345)
T 3tht_A 88 KITLYLNFV 96 (345)
T ss_dssp EEECEEEEC
T ss_pred ceEEEEEEe
Confidence 4666665
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=2.3e-11 Score=96.61 Aligned_cols=75 Identities=12% Similarity=0.103 Sum_probs=62.3
Q ss_pred CccEEEEcCCCc--cC--------CHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccC
Q 023186 21 TYTKVFVGGLAW--ET--------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VID 89 (286)
Q Consensus 21 ~~~~LfVgnLp~--~v--------tee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~ 89 (286)
..+.|.+.|+=. +. -+++|+++|++||.|++|+|.++. .+||+||+|.+.++|++||+.||. .++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 466788888722 11 146899999999999999986653 589999999999999999999985 599
Q ss_pred CeeeEEEEcc
Q 023186 90 GRRANCNLAC 99 (286)
Q Consensus 90 Gr~i~V~~a~ 99 (286)
||.|+|+++.
T Consensus 82 GR~i~v~~~~ 91 (114)
T 3s6e_A 82 GKMITAAYVP 91 (114)
T ss_dssp TEECEEEEEC
T ss_pred CEEEEEEEEc
Confidence 9999999985
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=7.8e-11 Score=94.53 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=68.9
Q ss_pred CCCCCccEEEEcCCCcc-CCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCC-HHHHHHHHHhcC---CccCCe
Q 023186 17 FGDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE-PEAAMKACVDAA---PVIDGR 91 (286)
Q Consensus 17 ~~d~~~~~LfVgnLp~~-vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~-~e~A~~Ai~~l~---~~i~Gr 91 (286)
..-.+.+.|+|+||+++ +++++|+++|++||+|..|+++++.. .|||+|.+ .++|++|++.++ .+|++.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 44567899999999999 99999999999999999999998865 59999999 899999999984 359999
Q ss_pred eeEEEEcc
Q 023186 92 RANCNLAC 99 (286)
Q Consensus 92 ~i~V~~a~ 99 (286)
.+++++..
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 99998775
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=2.1e-10 Score=87.19 Aligned_cols=74 Identities=20% Similarity=0.207 Sum_probs=60.6
Q ss_pred CccEEEEcCCCc----cCCH----HHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccCCe
Q 023186 21 TYTKVFVGGLAW----ETQK----ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGR 91 (286)
Q Consensus 21 ~~~~LfVgnLp~----~vte----e~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~Gr 91 (286)
+.-+|+|.-++. ++-. .+|.+.|++||+|..++++.|+ +||+|.+.++|.+||+ |+ ..|+||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 456788876652 2323 5789999999999999999884 8999999999999998 76 569999
Q ss_pred eeEEEEcccCCC
Q 023186 92 RANCNLACLGVQ 103 (286)
Q Consensus 92 ~i~V~~a~~~~~ 103 (286)
+|+|+++++...
T Consensus 77 ~LkV~lkt~dW~ 88 (91)
T 2dnr_A 77 TITIALKSPSGP 88 (91)
T ss_dssp EEEEEECCCSSC
T ss_pred EEEEEeCCCCcc
Confidence 999999976543
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=1e-09 Score=83.91 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=60.1
Q ss_pred CCccEEEEcCCCcc-----C-CH---HHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC-CccC
Q 023186 20 TTYTKVFVGGLAWE-----T-QK---ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVID 89 (286)
Q Consensus 20 ~~~~~LfVgnLp~~-----v-te---e~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~-~~i~ 89 (286)
.++-+|+|.-++.+ + ++ .+|.+.|++||+|..++++.|+ +||+|.|.++|.+||+ ++ ..|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45678999887632 2 22 4689999999999999999984 9999999999999999 76 5699
Q ss_pred CeeeEEEEccc
Q 023186 90 GRRANCNLACL 100 (286)
Q Consensus 90 Gr~i~V~~a~~ 100 (286)
||.|+|+++.+
T Consensus 84 Gr~L~V~~k~~ 94 (95)
T 1ufw_A 84 GRAVKISGPSS 94 (95)
T ss_dssp TEEEEEECCCC
T ss_pred CeEEEEeccCC
Confidence 99999998753
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.91 E-value=3e-09 Score=92.65 Aligned_cols=66 Identities=15% Similarity=0.168 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHhcCCEEEEEEeecC----CCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEEEcc
Q 023186 34 TQKETMEKYFEQFGEILEAVVITDK----ATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (286)
Q Consensus 34 vtee~L~~~F~~fG~I~~v~i~~dk----~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~~a~ 99 (286)
-.+++|++.|++||+|++++|+++. .+++++|++||+|.+.++|++||+.|+. .++||.|.|++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3467899999999999999998654 4558999999999999999999999985 5999999999874
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.36 E-value=2.1e-06 Score=67.12 Aligned_cols=75 Identities=12% Similarity=0.142 Sum_probs=66.3
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhc-----CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCe
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQF-----GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGR 91 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~f-----G~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr 91 (286)
.++..++|=+-|||..++++.|+.+++.+ |.|+++.+..|.. =|+|+|.|..+|-||.-.++. +|+||
T Consensus 17 ~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr 90 (117)
T 2l9w_A 17 SKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGK 90 (117)
T ss_dssp TTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTE
T ss_pred CccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCe
Confidence 34557888899999999999999999999 9999999998864 799999999999999988875 69999
Q ss_pred eeEEEEc
Q 023186 92 RANCNLA 98 (286)
Q Consensus 92 ~i~V~~a 98 (286)
+|+|.-.
T Consensus 91 ~Lr~gTv 97 (117)
T 2l9w_A 91 VIRSGTI 97 (117)
T ss_dssp EEEEECH
T ss_pred EEEecCH
Confidence 9999643
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=2.5e-05 Score=60.38 Aligned_cols=74 Identities=28% Similarity=0.333 Sum_probs=62.6
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHh-c----CCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCee
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQ-F----GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR 92 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~-f----G~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~ 92 (286)
+..-.++|.|.|||+++++|.|+-+|++ . |+|++++... +-|+|+|.|.+.|++.|+...+.|.+.+
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~ 75 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQ 75 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSB
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeE
Confidence 3445689999999999999999999986 2 5888887643 3689999999999999999888999999
Q ss_pred eEEEEcc
Q 023186 93 ANCNLAC 99 (286)
Q Consensus 93 i~V~~a~ 99 (286)
|.|....
T Consensus 76 LsV~P~~ 82 (104)
T 2dhx_A 76 LSLRPAP 82 (104)
T ss_dssp CEEEECC
T ss_pred EEEEcCC
Confidence 9997653
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.61 E-value=0.00024 Score=54.98 Aligned_cols=75 Identities=11% Similarity=0.076 Sum_probs=61.7
Q ss_pred CCccEEEEcCCCccC-C----HHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc-cCCeee
Q 023186 20 TTYTKVFVGGLAWET-Q----KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRA 93 (286)
Q Consensus 20 ~~~~~LfVgnLp~~v-t----ee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~-i~Gr~i 93 (286)
.-.++|+|.||+.++ + ++.++++|.+|.++......+.- .-..|.|.+.++|.+|-..|++. +.|++|
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 346789999998876 2 25789999999999887776653 24689999999999999999865 999999
Q ss_pred EEEEccc
Q 023186 94 NCNLACL 100 (286)
Q Consensus 94 ~V~~a~~ 100 (286)
+|-.+..
T Consensus 77 r~YFgq~ 83 (104)
T 1wey_A 77 KLYFAQT 83 (104)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999863
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.48 E-value=0.00022 Score=54.49 Aligned_cols=55 Identities=22% Similarity=0.335 Sum_probs=46.9
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
..+.++| ++|.++..+||.++|+.||. ..|+++.|. -|||.|.+++.|..||..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3455556 99999999999999999995 467777775 6999999999999999976
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.33 E-value=0.0012 Score=52.36 Aligned_cols=74 Identities=18% Similarity=0.180 Sum_probs=59.4
Q ss_pred CCCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCC-eeeEEE
Q 023186 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG-RRANCN 96 (286)
Q Consensus 18 ~d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~G-r~i~V~ 96 (286)
+....+.|-|-+.+.+. .+.|.++|++||+|.+..... ...+-.|+|+++.+|++||.+...+|++ -.|-|.
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVK 92 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEE
Confidence 34567889999999986 566788999999999887622 2459999999999999999998777874 667776
Q ss_pred Ec
Q 023186 97 LA 98 (286)
Q Consensus 97 ~a 98 (286)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.14 E-value=0.00042 Score=53.12 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=46.1
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
+.++| ++|.++...||.++|+.|| -..|+++.|. -|||.|.+++.|..||..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 44555 9999999999999999999 4577888775 6999999999999999976
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.80 E-value=0.0045 Score=46.68 Aligned_cols=63 Identities=13% Similarity=0.109 Sum_probs=51.3
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCC--cccEEEEEeCCHHHHHHHHHhcC
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR--SKGYGFVTFREPEAAMKACVDAA 85 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~--skGfgFV~F~~~e~A~~Ai~~l~ 85 (286)
+||.|++||+.+||+++.+.++...++.....+..+.+.+ .-.-|+|.|.+.|++..-.+..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 6899999999999999999998888776666665554332 23578999999999999888886
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.41 E-value=0.0043 Score=49.85 Aligned_cols=77 Identities=21% Similarity=0.354 Sum_probs=55.7
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEE-Eeec--------CCCC-----CcccEEEEEeCCHHHHHHHHHhcCCc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAV-VITD--------KATG-----RSKGYGFVTFREPEAAMKACVDAAPV 87 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~-i~~d--------k~tg-----~skGfgFV~F~~~e~A~~Ai~~l~~~ 87 (286)
...|.|-+.|++.+ ..+-+.|++||.|++-. +.++ +.+. ....+-.|+|+++.+|++||.+...+
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 45677778988765 55668899999997722 1110 0001 12467799999999999999999989
Q ss_pred cCCeeeEEEEcc
Q 023186 88 IDGRRANCNLAC 99 (286)
Q Consensus 88 i~Gr~i~V~~a~ 99 (286)
|+|..|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988888764
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.17 E-value=0.0023 Score=61.87 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=43.3
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
.++|+|. ++.++++++|.+.|++||.|.++.+-.++ .-|+.|||.+.+++..++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 5789997 89999999999999999999998776543 369999999999998877554
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.82 E-value=0.0063 Score=49.18 Aligned_cols=33 Identities=18% Similarity=0.063 Sum_probs=28.5
Q ss_pred EEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 023186 51 EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (286)
Q Consensus 51 ~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~ 85 (286)
.++|+++.. +++||+||+|.+.++|++|++.++
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~ 34 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYA 34 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhc
Confidence 467777754 689999999999999999999875
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.64 E-value=0.028 Score=42.81 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=45.9
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCC--cccEEEEEeCCHHHHHHHHHhcCC
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR--SKGYGFVTFREPEAAMKACVDAAP 86 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~--skGfgFV~F~~~e~A~~Ai~~l~~ 86 (286)
..-||.|+.||+.+||+++.+.++..-++.....+..+.+-+ .-.-|+|.|.+.|++..-.+..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g 75 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG 75 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 456899999999999999887776554443222222222211 124689999999999999888863
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.62 E-value=0.041 Score=44.02 Aligned_cols=40 Identities=18% Similarity=0.028 Sum_probs=34.7
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHhc-C-CccCCeeeEEEEccc
Q 023186 60 TGRSKGYGFVTFREPEAAMKACVDA-A-PVIDGRRANCNLACL 100 (286)
Q Consensus 60 tg~skGfgFV~F~~~e~A~~Ai~~l-~-~~i~Gr~i~V~~a~~ 100 (286)
..+.+|+++|+|.+.++|++|++.+ + ..|+| .|+++++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3577999999999999999999999 7 46999 999988754
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.73 E-value=0.33 Score=47.27 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=46.5
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~ 85 (286)
....++|+ ++..+...+|+++|+.||.| +|+++.|. .+||.|.+.+.|..+++.++
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 35566666 99999999999999999954 66666653 79999999999999999874
No 222
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=68.20 E-value=13 Score=27.28 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=38.5
Q ss_pred CCCCCCccEEEEcCCCccCCHHHHHHHHH----hcC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC
Q 023186 16 QFGDTTYTKVFVGGLAWETQKETMEKYFE----QFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (286)
Q Consensus 16 ~~~d~~~~~LfVgnLp~~vtee~L~~~F~----~fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~ 86 (286)
+.+|.....|++. .-.|+.+++.++ ..+ +|.++.++. ..+||-||+++..++...+|+...+
T Consensus 6 sv~d~~WYvv~~~----sG~E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 6 SVGAHMIFAVRTM----VGQEKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp ---CCCEEEEEEC----TTCHHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred CCCCCeEEEEEEE----CChHHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 3455566666654 233444444443 233 466665543 3789999999999999999988754
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=62.18 E-value=20 Score=24.80 Aligned_cols=67 Identities=10% Similarity=0.140 Sum_probs=38.2
Q ss_pred EEEEcCC-CccCCHHHHHHHHHhcC-----CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCC-ccCCeeeEEE
Q 023186 24 KVFVGGL-AWETQKETMEKYFEQFG-----EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (286)
Q Consensus 24 ~LfVgnL-p~~vtee~L~~~F~~fG-----~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~-~i~Gr~i~V~ 96 (286)
+|||..= -..++..+|..++..-+ +|-.++|..+ |.||+-.. +.+.++++.++. .+.|++++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 4555311 23355667777775444 3445665333 89999875 446778888864 5999999998
Q ss_pred Ecc
Q 023186 97 LAC 99 (286)
Q Consensus 97 ~a~ 99 (286)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 763
No 224
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=60.89 E-value=49 Score=24.62 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=53.2
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc-CC-------ccCCe
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA-AP-------VIDGR 91 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l-~~-------~i~Gr 91 (286)
.+.+-|-|-|||..+-+.++--.....|---.|+.+. |-+.|.|.+.++..-||..+ |+ +|.|.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 4567888889999988888776667777655565543 46999999999999999887 21 36777
Q ss_pred eeEEEEc
Q 023186 92 RANCNLA 98 (286)
Q Consensus 92 ~i~V~~a 98 (286)
.+.|-..
T Consensus 82 icdvist 88 (129)
T 4eyt_A 82 ICDVIST 88 (129)
T ss_dssp EEEEECC
T ss_pred eeeeeec
Confidence 7776433
No 225
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=60.36 E-value=1.8 Score=32.66 Aligned_cols=19 Identities=11% Similarity=0.366 Sum_probs=0.0
Q ss_pred CCccEEEEcCCCccCCHHH
Q 023186 20 TTYTKVFVGGLAWETQKET 38 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~ 38 (286)
...++|||+||++++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 4557899999999999874
No 226
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=55.38 E-value=29 Score=26.22 Aligned_cols=62 Identities=11% Similarity=0.058 Sum_probs=44.2
Q ss_pred CCccCCHHHHHHHH-HhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEcc
Q 023186 30 LAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (286)
Q Consensus 30 Lp~~vtee~L~~~F-~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a~ 99 (286)
++..++-++|.... +.||.-.++... +. -..|-..+.+|..+||+.+.....-+.|+|-+..
T Consensus 24 f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~ 86 (103)
T 2cu1_A 24 FPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVI 86 (103)
T ss_dssp EESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEE
T ss_pred ccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccCCcccceEEEEec
Confidence 56778878876655 679987777665 32 3678999999999999998644444455555543
No 227
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=52.01 E-value=32 Score=22.88 Aligned_cols=58 Identities=14% Similarity=0.037 Sum_probs=43.1
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcC
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~ 85 (286)
...++.|.++.-.-=...|++.+++ -.|..+.+... .+-+.|+|.+.++..++|+.+.
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 3457888888766667888999988 88888877543 2356788877777888888764
No 228
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=45.05 E-value=52 Score=27.17 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=39.1
Q ss_pred EEEEcCCCc-c--------CCHHHHHHHH--HhcCCEEEEEEeecCCCCCcccEEEEEeC-CHHHHHHHHHhc
Q 023186 24 KVFVGGLAW-E--------TQKETMEKYF--EQFGEILEAVVITDKATGRSKGYGFVTFR-EPEAAMKACVDA 84 (286)
Q Consensus 24 ~LfVgnLp~-~--------vtee~L~~~F--~~fG~I~~v~i~~dk~tg~skGfgFV~F~-~~e~A~~Ai~~l 84 (286)
.+.|-|++. . .+..+|++.| +.|..++ |+.+.++. -+.|++.|+|. |......|++.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~fe 83 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLLFD 83 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHHHH
Confidence 455667765 2 3347899977 8998764 55555543 47899999997 556666666544
No 229
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=36.79 E-value=1.3e+02 Score=22.62 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=39.1
Q ss_pred CccEEEEcCCCccCCHHHHHHHHH-------hcCCEEEEEEeecCCC-CCcccE--EE-EEeCCHHHHHHHHH
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFE-------QFGEILEAVVITDKAT-GRSKGY--GF-VTFREPEAAMKACV 82 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~-------~fG~I~~v~i~~dk~t-g~skGf--gF-V~F~~~e~A~~Ai~ 82 (286)
..+-|.+-.|..++++++++++.+ +.-.|+++.+-.+... ++.++| +| ++|+|.++.+.-..
T Consensus 20 mi~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~~ 92 (121)
T 3bb5_A 20 MLYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYAV 92 (121)
T ss_dssp CEEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHHH
T ss_pred cEEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHHc
Confidence 345556667888888776555443 3567888877666432 444554 43 58999888765443
No 230
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=36.36 E-value=1.2e+02 Score=21.98 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=33.8
Q ss_pred EEEcCCCccCCHHHHHHHH-------HhcCCEEEEEEeecCCCCCcccE--EE-EEeCCHHHHHH
Q 023186 25 VFVGGLAWETQKETMEKYF-------EQFGEILEAVVITDKATGRSKGY--GF-VTFREPEAAMK 79 (286)
Q Consensus 25 LfVgnLp~~vtee~L~~~F-------~~fG~I~~v~i~~dk~tg~skGf--gF-V~F~~~e~A~~ 79 (286)
|.+-.|..++++++++++. .+.-.|+++.+-.+.. .+.++| +| ++|+|.++.+.
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 3444577788766554443 2366788888777653 444544 33 58999887655
No 231
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=39.69 E-value=8.9 Score=29.18 Aligned_cols=55 Identities=15% Similarity=0.182 Sum_probs=34.8
Q ss_pred cCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEE--EEEeCCHHHHHHHHHhcCCccC
Q 023186 33 ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYG--FVTFREPEAAMKACVDAAPVID 89 (286)
Q Consensus 33 ~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfg--FV~F~~~e~A~~Ai~~l~~~i~ 89 (286)
..++++|+++..+.+ +..+.+.+...+|+.. |. +=.|.++++|.+|++.|...|.
T Consensus 33 ~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~~l~ 89 (106)
T 2lfv_A 33 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPADVQ 89 (106)
Confidence 345677888777775 4455555433333321 22 2378999999999999865443
No 232
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=32.70 E-value=81 Score=23.72 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=27.0
Q ss_pred CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCc
Q 023186 48 EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV 87 (286)
Q Consensus 48 ~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~ 87 (286)
.|.++... + ..|||-|||=.+..++++||+.+.+.
T Consensus 40 ~I~Si~~~-~----~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAP-E----HVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEEC-T----TCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEec-C----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 35565443 2 25899999999999999999988654
No 233
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=32.41 E-value=1.3e+02 Score=22.62 Aligned_cols=60 Identities=5% Similarity=-0.027 Sum_probs=36.9
Q ss_pred CccEEEEcCCCccCCHHHHHHHHHh-------cCCEEEEEEeecCCCCCccc--EEE-EEeCCHHHHHHHH
Q 023186 21 TYTKVFVGGLAWETQKETMEKYFEQ-------FGEILEAVVITDKATGRSKG--YGF-VTFREPEAAMKAC 81 (286)
Q Consensus 21 ~~~~LfVgnLp~~vtee~L~~~F~~-------fG~I~~v~i~~dk~tg~skG--fgF-V~F~~~e~A~~Ai 81 (286)
..+-|.+-.|..++++++++++.+. ...|+++.+-.+.. .+.++ ++| ++|+|.++.+.-.
T Consensus 21 mI~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~ 90 (116)
T 3bgu_A 21 GIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQ 90 (116)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHH
T ss_pred cEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHh
Confidence 3455556678888888776555543 34567777766643 44444 343 5888888765443
No 234
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=30.17 E-value=62 Score=23.62 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.8
Q ss_pred CEEEEEEeecCCCCCcccEEEEEeCC
Q 023186 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (286)
Q Consensus 48 ~I~~v~i~~dk~tg~skGfgFV~F~~ 73 (286)
+|++|+|..-...++-|+||=|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887766678999999999985
No 235
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=28.72 E-value=1.6e+02 Score=21.69 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=38.2
Q ss_pred ccEEEEcCCCccCCHHHHHHHHH-------hcCCEEEEEEeecCCC-CCcccE--E-EEEeCCHHHHHHHHH
Q 023186 22 YTKVFVGGLAWETQKETMEKYFE-------QFGEILEAVVITDKAT-GRSKGY--G-FVTFREPEAAMKACV 82 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~-------~fG~I~~v~i~~dk~t-g~skGf--g-FV~F~~~e~A~~Ai~ 82 (286)
.+-|.+-.|..++++++++++.+ +.-.|+++.+-.+... ++.++| + .++|+|.++.+.-..
T Consensus 11 i~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~ 82 (112)
T 1q4r_A 11 VKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYIA 82 (112)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHhC
Confidence 44555557888888877655443 3456777777665432 344554 4 358999988766443
No 236
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=28.58 E-value=1.4e+02 Score=21.66 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=36.8
Q ss_pred ccEEEEcCCCccCCHHHHHHHHH-------hcCCEEEEEEeecCCC---CCcccE--EE-EEeCCHHHHHHH
Q 023186 22 YTKVFVGGLAWETQKETMEKYFE-------QFGEILEAVVITDKAT---GRSKGY--GF-VTFREPEAAMKA 80 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~-------~fG~I~~v~i~~dk~t---g~skGf--gF-V~F~~~e~A~~A 80 (286)
.+.|.+-.|..++++++++++.+ +.-.|+++.+-.+... ++.++| +| ++|+|.++.+.-
T Consensus 9 i~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y 80 (108)
T 1tr0_A 9 VKHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEY 80 (108)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHH
Confidence 44555557888888877554443 3566778777666432 444554 33 589998887643
No 237
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=27.68 E-value=1.4e+02 Score=19.90 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=42.9
Q ss_pred CCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeC----CHHHHHHHHHhcC
Q 023186 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR----EPEAAMKACVDAA 85 (286)
Q Consensus 20 ~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~----~~e~A~~Ai~~l~ 85 (286)
....+|.|.++.-..-...|++.+.+.-.|.++.+... .+-..|+|. +.++..++|+.+.
T Consensus 8 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~G 71 (84)
T 1q8l_A 8 EVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAMG 71 (84)
T ss_dssp CEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHTT
T ss_pred ceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHcC
Confidence 34567889888766556778999988888888877544 236778885 4566677777664
No 238
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=26.49 E-value=1.6e+02 Score=21.61 Aligned_cols=61 Identities=13% Similarity=0.067 Sum_probs=43.5
Q ss_pred CCccCCHHHHHHHH-HhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEEc
Q 023186 30 LAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (286)
Q Consensus 30 Lp~~vtee~L~~~F-~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~a 98 (286)
++.-+.-++|.... ..||.-.++....+ --.|-..+.++..+||+.+.....-+.|+|-+.
T Consensus 20 f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~ 81 (94)
T 2jrh_A 20 FSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRILLL 81 (94)
T ss_dssp ECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCccccceEEEEE
Confidence 46667778887666 67998888776633 256888999999999999864444444555544
No 239
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=26.28 E-value=1.9e+02 Score=21.56 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=42.5
Q ss_pred CCccCCHHHHHHHH-HhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEE
Q 023186 30 LAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (286)
Q Consensus 30 Lp~~vtee~L~~~F-~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~ 96 (286)
++.-+.-++|.... ..||.-.++..+.+ --.|-..+.++..+||+.+.....-+.|+|-
T Consensus 36 f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~~kSLrIl 95 (100)
T 2npt_B 36 FPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKIL 95 (100)
T ss_dssp ECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccCccccceEEE
Confidence 56677888887666 67998888877643 3678899999999999998543333334443
No 240
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=26.18 E-value=1.3e+02 Score=19.31 Aligned_cols=57 Identities=19% Similarity=0.194 Sum_probs=41.9
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeC----CHHHHHHHHHhcC
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR----EPEAAMKACVDAA 85 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~----~~e~A~~Ai~~l~ 85 (286)
.++.|.++.-.--...|++.+.+.-.|.++.+.... +-+.|+|. +.++..++|+.+.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 64 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ------NRADVVFDPNLVKEEDIKEEIEDAG 64 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG------TEEEEEECTTTCCHHHHHHHHHHHT
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC------CEEEEEECCCCCCHHHHHHHHHHCC
Confidence 457777776554567789999988889888876542 36788885 5677888888765
No 241
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=25.56 E-value=81 Score=23.64 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=21.6
Q ss_pred CEEEEEEeecCCCCCcccEEEEEeCC
Q 023186 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (286)
Q Consensus 48 ~I~~v~i~~dk~tg~skGfgFV~F~~ 73 (286)
+|++|+|..-...++-|+||=|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887766668999999999975
No 242
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=25.36 E-value=1.4e+02 Score=19.24 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=43.5
Q ss_pred CCCccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeCC----HHHHHHHHHhcC
Q 023186 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE----PEAAMKACVDAA 85 (286)
Q Consensus 19 d~~~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~~----~e~A~~Ai~~l~ 85 (286)
+....++.|.++.-..-...|++.+.+.-.|.++.+... .+-..|+|.. .++..++|+.+.
T Consensus 6 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~G 70 (79)
T 1kvi_A 6 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDMG 70 (79)
T ss_dssp TCEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHHC
T ss_pred CcEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence 344567889888777667789999988877877777554 2367788853 466677777664
No 243
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=24.76 E-value=86 Score=23.71 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.2
Q ss_pred CEEEEEEeecCCCCCcccEEEEEeCC
Q 023186 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (286)
Q Consensus 48 ~I~~v~i~~dk~tg~skGfgFV~F~~ 73 (286)
+|++|+|..-...++-|+||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57788877766678999999999975
No 244
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=24.56 E-value=11 Score=30.36 Aligned_cols=28 Identities=14% Similarity=0.278 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeC
Q 023186 37 ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR 72 (286)
Q Consensus 37 e~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~ 72 (286)
+|+.++|...|.|+ +..+ .|||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vk---wfn~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICK---WFNV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEE---EEET-----TTTEEEEEEE
T ss_pred CcccccccceeEEE---EEEC-----CCCeeEEeeC
Confidence 45556666666543 3332 3789999976
No 245
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=24.25 E-value=59 Score=32.15 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=39.7
Q ss_pred CCccCCHHHHHHHH--H--hcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhc
Q 023186 30 LAWETQKETMEKYF--E--QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 30 Lp~~vtee~L~~~F--~--~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
++.+.+--+|+.+| + .+|-|+++.|..-+. .+.+...+|.|.|.+++.+++..+
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 34444445788888 2 588899988765543 345568899999999999998876
No 246
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=23.40 E-value=47 Score=29.06 Aligned_cols=34 Identities=12% Similarity=0.309 Sum_probs=27.2
Q ss_pred ccEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEee
Q 023186 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVIT 56 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~ 56 (286)
...+.|+|||..++...|.++++. ..+.++.++.
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 356789999999999999999987 6666655544
No 247
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=23.13 E-value=47 Score=18.46 Aligned_cols=13 Identities=15% Similarity=0.634 Sum_probs=11.0
Q ss_pred CCHHHHHHHHHhc
Q 023186 34 TQKETMEKYFEQF 46 (286)
Q Consensus 34 vtee~L~~~F~~f 46 (286)
-+|.+|+++.++|
T Consensus 13 rnekelrdfiekf 25 (28)
T 1fme_A 13 RNEKELRDFIEKF 25 (28)
T ss_dssp CCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHh
Confidence 3688999999987
No 248
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=22.70 E-value=1.9e+02 Score=19.79 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=39.3
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeC----CHHHHHHHHHhc
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR----EPEAAMKACVDA 84 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~----~~e~A~~Ai~~l 84 (286)
.+|.|.++.-..-...|++.+.+.-.|.++.+.... +-+.|+|. +.++..++|+.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~------~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLEN------RSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTT------TEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCCHHHHHHHHHhc
Confidence 457777776554456788889888888888876543 36788885 345667777765
No 249
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=22.68 E-value=51 Score=25.03 Aligned_cols=47 Identities=9% Similarity=0.076 Sum_probs=27.1
Q ss_pred ccCCHHHHHHHHH-hcCC---EEEEE-EeecCCCCCcccEEEEEeCCHHHHHH
Q 023186 32 WETQKETMEKYFE-QFGE---ILEAV-VITDKATGRSKGYGFVTFREPEAAMK 79 (286)
Q Consensus 32 ~~vtee~L~~~F~-~fG~---I~~v~-i~~dk~tg~skGfgFV~F~~~e~A~~ 79 (286)
.+.+..+|++.+. .++. +..|. +.+.-..+++.|||. .|+|.+.|++
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~-IYds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAK-YYYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEE-EESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEE-EECCHHHHHh
Confidence 3577888887774 4543 22222 223333467777775 4677776654
No 250
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=22.40 E-value=2.5e+02 Score=21.09 Aligned_cols=58 Identities=10% Similarity=0.185 Sum_probs=34.3
Q ss_pred ccEEEEcCCCccCCHHHHHHHH-------HhcCCEEEEEEeecCCCCCcccEEE-EEeCCHHHHHH
Q 023186 22 YTKVFVGGLAWETQKETMEKYF-------EQFGEILEAVVITDKATGRSKGYGF-VTFREPEAAMK 79 (286)
Q Consensus 22 ~~~LfVgnLp~~vtee~L~~~F-------~~fG~I~~v~i~~dk~tg~skGfgF-V~F~~~e~A~~ 79 (286)
.+-|.+-.|..++++++++++. .+.-.|+++.+-.+......--++| ++|+|.++.+.
T Consensus 21 I~HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 21 IRHTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 3444445677777766654444 3456778887766643211133454 58999887654
No 251
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=21.75 E-value=1.5e+02 Score=21.32 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=35.2
Q ss_pred EEEcCCCccCCHHHHHHHHHh-cC-CEEEEEEeecCCCCCcccEEEEEeCCHHHHHHH
Q 023186 25 VFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKA 80 (286)
Q Consensus 25 LfVgnLp~~vtee~L~~~F~~-fG-~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~A 80 (286)
.|+-.++.+.+..+|++.+++ |+ +|.+|..+.-+. + .--|+|++...++|...
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~--~KKA~VtL~~g~~aid~ 78 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-G--EKKAVVRLSEDDDAQEV 78 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-S--SEEEEEEECTTSCHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-C--ceEEEEEECCCCcHHHH
Confidence 345557889999999999976 55 566666554432 2 22589999876665443
No 252
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=21.70 E-value=1.3e+02 Score=24.45 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHhcCCEE---EEEEeecCCCCCcccEEEEE
Q 023186 34 TQKETMEKYFEQFGEIL---EAVVITDKATGRSKGYGFVT 70 (286)
Q Consensus 34 vtee~L~~~F~~fG~I~---~v~i~~dk~tg~skGfgFV~ 70 (286)
.++++|+++=.+.|++. ++.+..|..+|+.+.++|-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58999999999999774 45566665579999888854
No 253
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=21.66 E-value=1.4e+02 Score=21.54 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=26.8
Q ss_pred HHHHHHhcCC-EEEEEEeecCCCC--CcccEEEEEeCCHHHHHHHHHhc
Q 023186 39 MEKYFEQFGE-ILEAVVITDKATG--RSKGYGFVTFREPEAAMKACVDA 84 (286)
Q Consensus 39 L~~~F~~fG~-I~~v~i~~dk~tg--~skGfgFV~F~~~e~A~~Ai~~l 84 (286)
...+|++||- +.-.- ......| .......|+|.|.+.|++.....
T Consensus 26 ~~~~l~~~GG~~l~rg-~~~~lEG~~~~~~~viieFps~~aa~a~y~Sp 73 (94)
T 3lo3_A 26 VASTLAKYSGEVLVKG-SVEQLHGKFEHKAQVILEFPSREDAYNWYHSE 73 (94)
T ss_dssp HHHHHHTTTCEEEEEE-ECEEEESCCCCSEEEEEEESSHHHHHHHHHSH
T ss_pred HHHHHHHcCCEEEEEc-ccccccCCCCCCeEEEEECCCHHHHHHHHCCH
Confidence 4467778863 22111 1111112 24567899999999999887654
No 254
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=21.49 E-value=1.2e+02 Score=25.54 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=23.2
Q ss_pred cccEEEEEeCCHHHHHHHHHhcCCcc
Q 023186 63 SKGYGFVTFREPEAAMKACVDAAPVI 88 (286)
Q Consensus 63 skGfgFV~F~~~e~A~~Ai~~l~~~i 88 (286)
-|||-|||=.+..++++||+.+.+..
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy 173 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIY 173 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhh
Confidence 68999999999999999999987653
No 255
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=21.44 E-value=32 Score=30.24 Aligned_cols=35 Identities=6% Similarity=0.166 Sum_probs=27.7
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeec
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD 57 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~d 57 (286)
..+.|+|||..++...|.++++....+..+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 45789999999999999999986656666665543
No 256
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=21.11 E-value=1.5e+02 Score=17.99 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=36.8
Q ss_pred EEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeC---CHHHHHHHHHhcC
Q 023186 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR---EPEAAMKACVDAA 85 (286)
Q Consensus 24 ~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~---~~e~A~~Ai~~l~ 85 (286)
++.|.++.-..-...|++.+.+.-.|.++.+... .+-..|+|. +.+...++|+.+.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~G 62 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDAG 62 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHHT
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHcC
Confidence 4556666554445678888888877888877544 235677775 4566666776653
No 257
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=20.82 E-value=1.6e+02 Score=18.27 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=38.2
Q ss_pred cEEEEcCCCccCCHHHHHHHHHhcCCEEEEEEeecCCCCCcccEEEEEeC----CHHHHHHHHHhcC
Q 023186 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR----EPEAAMKACVDAA 85 (286)
Q Consensus 23 ~~LfVgnLp~~vtee~L~~~F~~fG~I~~v~i~~dk~tg~skGfgFV~F~----~~e~A~~Ai~~l~ 85 (286)
.++.|.++.-.--...|++.+.+.-.|.++.+.... +-..|+|. +.+...++|+.+.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~~i~~~i~~~G 65 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLAN------SNGTVEYDPLLTSPETLRGAIEDMG 65 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTT------TEEEEEECTTTCCHHHHHHHHHHHT
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccC------CEEEEEECCCcCCHHHHHHHHHHCC
Confidence 457777776544456688888888778777775442 36778886 3456667777654
No 258
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=20.12 E-value=1.7e+02 Score=22.08 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=42.2
Q ss_pred CCccCCHHHHHHHH-HhcCCEEEEEEeecCCCCCcccEEEEEeCCHHHHHHHHHhcCCccCCeeeEEEE
Q 023186 30 LAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (286)
Q Consensus 30 Lp~~vtee~L~~~F-~~fG~I~~v~i~~dk~tg~skGfgFV~F~~~e~A~~Ai~~l~~~i~Gr~i~V~~ 97 (286)
++.-+.-++|+... ..||.-.++..+.+ --.|-..+.++..+||+.+.....-+.|+|-+
T Consensus 47 f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs~~mkSLRIlL 107 (111)
T 2c60_A 47 FSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRILL 107 (111)
T ss_dssp ECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccCccccceEEEE
Confidence 56677878887666 67998888776643 25688899999999999985433334444433
Done!