Query 023188
Match_columns 286
No_of_seqs 257 out of 2017
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 09:06:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023188.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023188hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02983 biotin carboxyl carri 100.0 9.1E-53 2E-57 386.9 25.8 263 1-286 1-274 (274)
2 TIGR00531 BCCP acetyl-CoA carb 100.0 2.4E-31 5.2E-36 229.4 18.4 156 115-285 1-156 (156)
3 PRK06302 acetyl-CoA carboxylas 100.0 9E-31 1.9E-35 225.6 18.1 155 115-285 1-155 (155)
4 COG0511 AccB Biotin carboxyl c 99.9 2.5E-27 5.3E-32 201.1 13.2 140 120-286 1-140 (140)
5 PF00364 Biotin_lipoyl: Biotin 99.7 8.6E-18 1.9E-22 127.7 4.4 73 211-284 2-74 (74)
6 PRK05889 putative acetyl-CoA c 99.7 6.6E-17 1.4E-21 121.7 8.7 68 211-285 4-71 (71)
7 PRK07051 hypothetical protein; 99.7 2.1E-16 4.5E-21 121.9 9.6 76 210-285 4-79 (80)
8 PRK06549 acetyl-CoA carboxylas 99.7 7.7E-16 1.7E-20 129.8 11.7 72 207-285 59-130 (130)
9 PRK08225 acetyl-CoA carboxylas 99.7 3.4E-16 7.3E-21 117.1 8.3 68 211-285 3-70 (70)
10 PRK06748 hypothetical protein; 99.6 5.7E-16 1.2E-20 121.4 8.7 69 210-285 5-74 (83)
11 PRK05641 putative acetyl-CoA c 99.6 3.7E-15 8E-20 128.7 10.9 70 208-284 83-152 (153)
12 cd06850 biotinyl_domain The bi 99.5 4.3E-14 9.3E-19 102.1 8.5 67 211-284 1-67 (67)
13 PRK14042 pyruvate carboxylase 99.4 3.6E-13 7.9E-18 137.5 9.5 71 208-285 524-594 (596)
14 PRK09282 pyruvate carboxylase 99.4 1.9E-12 4.1E-17 132.3 9.1 73 207-286 520-592 (592)
15 PRK14875 acetoin dehydrogenase 99.4 2.1E-12 4.5E-17 120.0 8.5 64 216-286 15-78 (371)
16 cd06663 Biotinyl_lipoyl_domain 99.3 5.6E-12 1.2E-16 94.1 8.6 61 217-284 13-73 (73)
17 TIGR01108 oadA oxaloacetate de 99.3 1.8E-12 3.9E-17 132.3 7.8 67 208-281 516-582 (582)
18 PRK14040 oxaloacetate decarbox 99.3 3.3E-12 7.2E-17 130.6 9.1 70 209-285 524-593 (593)
19 PLN02226 2-oxoglutarate dehydr 99.3 3.1E-12 6.8E-17 127.3 8.3 62 217-285 105-166 (463)
20 COG4770 Acetyl/propionyl-CoA c 99.3 4.4E-12 9.6E-17 127.6 8.6 72 208-286 574-645 (645)
21 TIGR02712 urea_carbox urea car 99.3 4.8E-12 1E-16 138.0 9.0 72 207-285 1130-1201(1201)
22 TIGR01235 pyruv_carbox pyruvat 99.3 5.3E-12 1.2E-16 137.0 9.0 72 207-285 1072-1143(1143)
23 PRK12999 pyruvate carboxylase; 99.3 9.1E-12 2E-16 135.3 8.9 72 208-286 1075-1146(1146)
24 PTZ00144 dihydrolipoamide succ 99.3 1.1E-11 2.3E-16 122.3 8.5 62 217-285 58-119 (418)
25 COG0508 AceF Pyruvate/2-oxoglu 99.2 2.1E-11 4.6E-16 119.6 7.7 62 217-285 16-77 (404)
26 COG1038 PycA Pyruvate carboxyl 99.2 1.5E-11 3.3E-16 127.6 6.6 72 207-285 1077-1148(1149)
27 PRK05704 dihydrolipoamide succ 99.2 4.3E-11 9.4E-16 117.5 8.3 62 217-285 16-77 (407)
28 TIGR01347 sucB 2-oxoglutarate 99.1 1.5E-10 3.2E-15 113.7 8.5 62 217-285 14-75 (403)
29 TIGR02927 SucB_Actino 2-oxoglu 99.1 2.5E-10 5.3E-15 116.8 8.0 62 217-285 149-210 (590)
30 PRK11854 aceF pyruvate dehydro 99.1 2.4E-10 5.2E-15 117.7 7.7 62 217-285 218-279 (633)
31 PRK11854 aceF pyruvate dehydro 99.0 4.8E-10 1E-14 115.5 8.3 62 217-285 14-75 (633)
32 TIGR01348 PDHac_trf_long pyruv 99.0 7.7E-10 1.7E-14 112.3 7.5 74 210-285 117-190 (546)
33 KOG0369 Pyruvate carboxylase [ 99.0 1.2E-09 2.6E-14 112.1 7.6 73 207-286 1104-1176(1176)
34 PLN02528 2-oxoisovalerate dehy 99.0 1.7E-09 3.7E-14 106.5 8.4 61 218-285 13-73 (416)
35 PRK11855 dihydrolipoamide acet 98.9 1.9E-09 4.1E-14 109.3 7.9 74 210-285 120-193 (547)
36 KOG0559 Dihydrolipoamide succi 98.9 7.5E-10 1.6E-14 106.8 3.2 57 230-286 92-148 (457)
37 cd06849 lipoyl_domain Lipoyl d 98.9 1.1E-08 2.4E-13 72.5 8.4 64 214-284 11-74 (74)
38 TIGR01348 PDHac_trf_long pyruv 98.9 5.3E-09 1.1E-13 106.2 8.5 64 215-285 11-74 (546)
39 PRK11855 dihydrolipoamide acet 98.8 1E-08 2.2E-13 104.0 8.3 62 217-285 15-76 (547)
40 PLN02744 dihydrolipoyllysine-r 98.8 8.5E-09 1.8E-13 104.7 7.6 61 217-284 126-187 (539)
41 TIGR01349 PDHac_trf_mito pyruv 98.8 9.2E-09 2E-13 101.9 7.7 62 217-285 13-75 (435)
42 PRK11856 branched-chain alpha- 98.8 1.3E-08 2.7E-13 99.6 8.4 63 216-285 15-77 (411)
43 KOG0238 3-Methylcrotonyl-CoA c 98.8 4.5E-09 9.7E-14 105.3 4.7 69 210-285 602-670 (670)
44 KOG0557 Dihydrolipoamide acety 98.7 1.1E-08 2.4E-13 101.3 5.9 62 217-285 52-114 (470)
45 PRK11892 pyruvate dehydrogenas 98.7 2.9E-08 6.3E-13 99.3 7.8 62 217-285 16-78 (464)
46 TIGR02927 SucB_Actino 2-oxoglu 98.7 3.2E-08 6.9E-13 101.5 7.6 63 216-285 15-77 (590)
47 PRK01202 glycine cleavage syst 98.4 8E-07 1.7E-11 74.6 6.5 56 231-286 44-106 (127)
48 KOG0368 Acetyl-CoA carboxylase 98.3 7.6E-07 1.6E-11 97.5 6.5 72 206-285 682-753 (2196)
49 cd06848 GCS_H Glycine cleavage 98.3 1.1E-06 2.4E-11 69.8 5.7 56 213-274 24-79 (96)
50 KOG0558 Dihydrolipoamide trans 98.2 5.9E-07 1.3E-11 86.8 2.2 57 229-285 83-139 (474)
51 TIGR00998 8a0101 efflux pump m 98.1 4.7E-06 1E-10 78.1 7.0 33 254-286 205-237 (334)
52 PRK09783 copper/silver efflux 98.1 7.1E-06 1.5E-10 80.5 8.4 69 210-285 124-241 (409)
53 TIGR01730 RND_mfp RND family e 98.0 6.9E-06 1.5E-10 75.6 5.5 69 210-285 27-166 (322)
54 TIGR03077 not_gcvH glycine cle 98.0 9.9E-06 2.1E-10 66.8 5.4 39 231-269 37-75 (110)
55 TIGR03309 matur_yqeB selenium- 98.0 2.1E-05 4.6E-10 73.4 8.2 65 209-286 164-228 (256)
56 PRK10476 multidrug resistance 98.0 1.3E-05 2.8E-10 76.3 6.9 34 253-286 208-241 (346)
57 TIGR00527 gcvH glycine cleavag 97.9 1.1E-05 2.4E-10 67.7 4.6 48 224-271 33-83 (127)
58 PRK10559 p-hydroxybenzoic acid 97.9 2.6E-05 5.7E-10 73.8 6.7 69 210-285 48-186 (310)
59 PRK00624 glycine cleavage syst 97.9 2.7E-05 5.9E-10 64.6 5.8 38 231-268 39-76 (114)
60 PRK13380 glycine cleavage syst 97.9 1.9E-05 4.2E-10 67.8 5.1 57 211-273 37-93 (144)
61 PRK03598 putative efflux pump 97.8 2.8E-05 6.2E-10 73.4 6.2 32 254-285 204-235 (331)
62 PRK15136 multidrug efflux syst 97.8 3.8E-05 8.2E-10 74.9 6.3 32 254-285 216-247 (390)
63 PRK09578 periplasmic multidrug 97.8 3.9E-05 8.4E-10 74.1 6.3 69 210-285 64-205 (385)
64 PRK15030 multidrug efflux syst 97.6 9.3E-05 2E-09 72.0 6.4 69 209-284 65-206 (397)
65 PRK09859 multidrug efflux syst 97.6 9.9E-05 2.1E-09 71.4 6.5 68 210-284 62-202 (385)
66 PF13533 Biotin_lipoyl_2: Biot 97.6 0.00011 2.3E-09 52.0 5.0 33 254-286 3-35 (50)
67 PRK11578 macrolide transporter 97.6 0.00013 2.9E-09 69.9 6.4 69 209-284 61-217 (370)
68 cd06253 M14_ASTE_ASPA_like_3 A 97.5 0.00035 7.7E-09 66.1 8.2 66 209-284 229-297 (298)
69 PF13533 Biotin_lipoyl_2: Biot 97.5 9.4E-05 2E-09 52.4 3.2 36 211-253 4-39 (50)
70 PF12700 HlyD_2: HlyD family s 97.5 0.00011 2.3E-09 67.9 4.1 33 210-250 22-54 (328)
71 PRK11556 multidrug efflux syst 97.4 0.0002 4.4E-09 70.3 5.8 70 208-284 86-228 (415)
72 PRK12784 hypothetical protein; 97.4 0.00067 1.4E-08 53.0 7.1 68 211-285 7-75 (84)
73 cd06252 M14_ASTE_ASPA_like_2 A 97.4 0.00058 1.3E-08 65.0 8.0 66 210-285 245-314 (316)
74 cd06251 M14_ASTE_ASPA_like_1 A 97.3 0.00084 1.8E-08 63.0 8.2 65 210-284 220-286 (287)
75 TIGR02971 heterocyst_DevB ABC 97.2 0.00068 1.5E-08 63.7 6.7 34 210-250 14-50 (327)
76 TIGR02994 ectoine_eutE ectoine 97.2 0.0011 2.5E-08 63.6 8.1 65 210-284 256-324 (325)
77 cd06250 M14_PaAOTO_like An unc 97.1 0.0014 3E-08 63.7 7.7 67 208-284 288-358 (359)
78 PRK05889 putative acetyl-CoA c 97.1 0.00083 1.8E-08 50.3 4.4 33 253-285 2-34 (71)
79 PF01597 GCV_H: Glycine cleava 97.0 0.0015 3.2E-08 54.5 5.7 39 231-269 38-76 (122)
80 TIGR01843 type_I_hlyD type I s 96.9 0.0022 4.8E-08 61.4 7.1 33 210-249 44-76 (423)
81 COG0509 GcvH Glycine cleavage 96.9 0.0013 2.8E-08 56.0 4.4 40 231-270 46-85 (131)
82 PF13375 RnfC_N: RnfC Barrel s 96.9 0.0028 6.1E-08 51.4 6.0 39 230-269 44-82 (101)
83 cd06254 M14_ASTE_ASPA_like_4 A 96.8 0.0029 6.2E-08 59.4 6.9 65 208-282 222-288 (288)
84 PRK06748 hypothetical protein; 96.7 0.0035 7.6E-08 49.4 5.0 34 252-285 3-36 (83)
85 PRK08225 acetyl-CoA carboxylas 96.6 0.0033 7.2E-08 46.7 4.4 33 253-285 1-33 (70)
86 COG3608 Predicted deacylase [G 96.5 0.0066 1.4E-07 58.8 6.9 66 209-284 256-324 (331)
87 cd06850 biotinyl_domain The bi 96.4 0.0049 1.1E-07 43.9 3.8 31 255-285 1-31 (67)
88 COG0511 AccB Biotin carboxyl c 95.8 0.012 2.6E-07 50.2 4.2 34 252-285 69-102 (140)
89 cd06255 M14_ASTE_ASPA_like_5 A 95.8 0.026 5.6E-07 53.3 6.8 51 209-267 231-283 (293)
90 PRK06549 acetyl-CoA carboxylas 95.7 0.017 3.6E-07 49.1 4.6 33 253-285 61-93 (130)
91 PRK10476 multidrug resistance 95.6 0.021 4.5E-07 54.4 5.6 50 233-286 32-81 (346)
92 PF00364 Biotin_lipoyl: Biotin 95.5 0.017 3.8E-07 43.6 3.7 32 254-285 1-38 (74)
93 PRK07051 hypothetical protein; 95.4 0.017 3.7E-07 44.3 3.4 32 210-248 48-79 (80)
94 PF04952 AstE_AspA: Succinylgl 95.3 0.046 1E-06 50.5 6.7 65 210-284 221-289 (292)
95 TIGR00998 8a0101 efflux pump m 95.3 0.024 5.2E-07 53.1 4.7 35 252-286 41-75 (334)
96 TIGR01000 bacteriocin_acc bact 95.1 0.039 8.6E-07 54.8 6.0 41 246-286 52-92 (457)
97 PRK05641 putative acetyl-CoA c 95.1 0.029 6.3E-07 48.8 4.4 32 254-285 85-116 (153)
98 PRK11556 multidrug efflux syst 95.0 0.043 9.3E-07 54.1 5.7 54 232-286 67-120 (415)
99 PRK09859 multidrug efflux syst 95.0 0.041 8.8E-07 53.3 5.4 54 232-286 41-94 (385)
100 PRK11578 macrolide transporter 94.9 0.051 1.1E-06 52.2 6.0 43 243-286 52-94 (370)
101 PRK15136 multidrug efflux syst 94.9 0.036 7.7E-07 54.2 4.9 34 253-286 61-94 (390)
102 PRK09578 periplasmic multidrug 94.9 0.043 9.4E-07 53.1 5.4 53 233-286 44-96 (385)
103 TIGR01843 type_I_hlyD type I s 94.9 0.044 9.5E-07 52.5 5.4 53 230-285 23-75 (423)
104 PF13437 HlyD_3: HlyD family s 94.9 0.03 6.6E-07 43.9 3.6 33 211-250 1-33 (105)
105 PRK09439 PTS system glucose-sp 94.8 0.063 1.4E-06 47.5 5.7 65 210-285 21-124 (169)
106 PRK03598 putative efflux pump 94.7 0.065 1.4E-06 50.7 5.8 34 253-286 43-76 (331)
107 TIGR03794 NHPM_micro_HlyD NHPM 94.5 0.066 1.4E-06 52.5 5.7 37 250-286 55-91 (421)
108 COG1566 EmrA Multidrug resista 94.4 0.052 1.1E-06 53.1 4.6 34 253-286 53-86 (352)
109 TIGR01936 nqrA NADH:ubiquinone 94.4 0.049 1.1E-06 54.8 4.4 39 230-269 43-81 (447)
110 PRK15030 multidrug efflux syst 94.3 0.079 1.7E-06 51.7 5.7 41 245-286 58-98 (397)
111 cd00210 PTS_IIA_glc PTS_IIA, P 94.2 0.16 3.4E-06 42.8 6.5 20 266-285 83-102 (124)
112 PRK10559 p-hydroxybenzoic acid 94.1 0.073 1.6E-06 50.5 4.8 33 254-286 48-80 (310)
113 PF09891 DUF2118: Uncharacteri 94.0 0.083 1.8E-06 46.0 4.6 40 230-269 94-134 (150)
114 PRK05352 Na(+)-translocating N 93.8 0.13 2.9E-06 51.7 6.3 39 230-269 44-82 (448)
115 TIGR00830 PTBA PTS system, glu 93.6 0.22 4.7E-06 41.8 6.2 21 265-285 82-102 (121)
116 PF00529 HlyD: HlyD family sec 93.3 0.052 1.1E-06 49.5 2.3 32 211-249 3-34 (305)
117 TIGR01945 rnfC electron transp 93.3 0.083 1.8E-06 52.6 3.9 39 229-268 44-82 (435)
118 PF05896 NQRA: Na(+)-transloca 93.3 0.13 2.9E-06 48.4 4.9 38 230-270 43-82 (257)
119 TIGR01235 pyruv_carbox pyruvat 93.1 0.11 2.5E-06 57.7 4.9 70 208-285 1037-1106(1143)
120 COG0845 AcrA Membrane-fusion p 92.8 0.25 5.3E-06 44.9 5.8 44 242-286 56-99 (372)
121 PF00358 PTS_EIIA_1: phosphoen 92.5 0.27 5.9E-06 41.8 5.4 65 210-285 3-106 (132)
122 COG4656 RnfC Predicted NADH:ub 92.0 0.15 3.3E-06 52.1 3.8 42 230-273 47-91 (529)
123 PRK09783 copper/silver efflux 92.0 0.27 5.9E-06 48.4 5.5 43 243-285 112-156 (409)
124 PRK09439 PTS system glucose-sp 91.9 0.47 1E-05 42.0 6.2 55 230-285 106-168 (169)
125 TIGR00999 8a0102 Membrane Fusi 91.8 0.23 5E-06 44.7 4.3 32 254-285 89-120 (265)
126 KOG3373 Glycine cleavage syste 91.6 0.13 2.8E-06 45.5 2.4 45 228-272 81-128 (172)
127 PRK05035 electron transport co 91.5 0.21 4.6E-06 52.9 4.4 38 230-268 51-88 (695)
128 TIGR01995 PTS-II-ABC-beta PTS 91.5 0.41 8.9E-06 49.9 6.4 75 210-284 500-609 (610)
129 TIGR00531 BCCP acetyl-CoA carb 91.3 0.17 3.6E-06 44.0 2.8 33 209-248 124-156 (156)
130 COG2190 NagE Phosphotransferas 91.0 0.46 1E-05 41.7 5.3 20 266-285 90-109 (156)
131 PRK06302 acetyl-CoA carboxylas 91.0 0.2 4.3E-06 43.4 2.9 33 209-248 123-155 (155)
132 PRK09824 PTS system beta-gluco 90.9 0.5 1.1E-05 49.6 6.4 64 211-285 480-582 (627)
133 PRK05305 phosphatidylserine de 90.8 0.42 9.2E-06 43.1 5.0 48 231-282 155-202 (206)
134 PRK14042 pyruvate carboxylase 90.7 0.29 6.2E-06 51.1 4.4 32 254-285 526-557 (596)
135 PRK10255 PTS system N-acetyl g 90.7 0.58 1.3E-05 49.3 6.6 66 209-285 498-602 (648)
136 PRK09824 PTS system beta-gluco 90.5 0.6 1.3E-05 49.1 6.5 75 210-284 516-625 (627)
137 COG1726 NqrA Na+-transporting 90.5 0.42 9.2E-06 47.3 5.0 39 230-271 43-83 (447)
138 TIGR00164 PS_decarb_rel phosph 90.4 0.5 1.1E-05 42.1 5.0 48 231-282 135-182 (189)
139 TIGR03794 NHPM_micro_HlyD NHPM 90.3 0.34 7.3E-06 47.6 4.2 32 254-285 254-285 (421)
140 PRK14875 acetoin dehydrogenase 90.0 0.31 6.8E-06 45.3 3.6 35 210-251 46-80 (371)
141 PLN02983 biotin carboxyl carri 89.9 0.39 8.5E-06 45.6 4.1 30 256-285 200-236 (274)
142 PF07831 PYNP_C: Pyrimidine nu 89.4 0.47 1E-05 36.5 3.6 28 214-250 29-56 (75)
143 TIGR01108 oadA oxaloacetate de 89.1 0.47 1E-05 49.3 4.4 33 253-285 517-549 (582)
144 PRK14040 oxaloacetate decarbox 89.1 0.47 1E-05 49.5 4.3 33 253-285 524-556 (593)
145 TIGR01995 PTS-II-ABC-beta PTS 88.7 1 2.2E-05 47.0 6.6 64 211-285 464-566 (610)
146 PLN02226 2-oxoglutarate dehydr 88.5 0.36 7.7E-06 49.0 3.0 35 209-250 134-168 (463)
147 cd06663 Biotinyl_lipoyl_domain 88.5 0.43 9.3E-06 35.1 2.7 31 210-247 43-73 (73)
148 PRK10255 PTS system N-acetyl g 88.3 0.85 1.9E-05 48.1 5.7 77 209-285 535-647 (648)
149 PRK09282 pyruvate carboxylase 88.1 0.61 1.3E-05 48.6 4.5 33 253-285 522-554 (592)
150 TIGR01000 bacteriocin_acc bact 87.5 0.45 9.7E-06 47.4 3.0 34 210-250 60-93 (457)
151 COG4770 Acetyl/propionyl-CoA c 87.5 0.6 1.3E-05 48.6 3.9 31 255-285 577-607 (645)
152 COG1566 EmrA Multidrug resista 87.2 0.61 1.3E-05 45.8 3.6 34 253-286 208-241 (352)
153 PF02666 PS_Dcarbxylase: Phosp 87.1 0.81 1.8E-05 40.8 4.1 62 211-282 138-201 (202)
154 TIGR00830 PTBA PTS system, glu 86.8 0.85 1.8E-05 38.3 3.8 21 230-250 84-104 (121)
155 PF00358 PTS_EIIA_1: phosphoen 86.0 0.64 1.4E-05 39.5 2.7 23 230-252 88-110 (132)
156 cd06849 lipoyl_domain Lipoyl d 85.6 1.2 2.5E-05 30.8 3.5 28 258-285 11-38 (74)
157 TIGR02712 urea_carbox urea car 85.4 0.93 2E-05 50.9 4.3 33 253-285 1132-1164(1201)
158 cd00210 PTS_IIA_glc PTS_IIA, P 85.2 1.1 2.4E-05 37.7 3.7 20 230-249 84-103 (124)
159 PTZ00144 dihydrolipoamide succ 84.9 0.81 1.8E-05 45.8 3.2 36 209-251 87-122 (418)
160 COG2190 NagE Phosphotransferas 83.3 2 4.3E-05 37.8 4.6 55 230-284 91-153 (156)
161 PRK05704 dihydrolipoamide succ 81.9 1.3 2.7E-05 44.2 3.2 36 209-251 45-80 (407)
162 PRK12999 pyruvate carboxylase; 81.8 1.6 3.5E-05 48.8 4.3 32 254-285 1077-1108(1146)
163 PF06898 YqfD: Putative stage 81.8 3 6.6E-05 41.0 5.8 53 211-265 191-245 (385)
164 TIGR02876 spore_yqfD sporulati 81.7 3.1 6.8E-05 41.0 5.9 36 210-245 187-222 (382)
165 TIGR00999 8a0102 Membrane Fusi 81.5 1.3 2.9E-05 39.8 3.0 31 211-248 90-120 (265)
166 TIGR01730 RND_mfp RND family e 81.3 1.4 3.1E-05 40.4 3.2 36 208-250 133-168 (322)
167 COG0845 AcrA Membrane-fusion p 81.0 1.3 2.9E-05 40.1 2.8 32 211-249 68-99 (372)
168 COG0508 AceF Pyruvate/2-oxoglu 79.4 1.8 4E-05 43.0 3.4 34 210-250 46-79 (404)
169 KOG0559 Dihydrolipoamide succi 79.3 1.4 3E-05 43.8 2.4 34 210-250 116-149 (457)
170 TIGR01347 sucB 2-oxoglutarate 79.2 1.8 3.8E-05 43.1 3.2 35 209-250 43-77 (403)
171 PRK12784 hypothetical protein; 79.0 1.9 4.1E-05 34.0 2.7 36 250-285 1-37 (84)
172 PRK14844 bifunctional DNA-dire 78.8 2.9 6.3E-05 50.4 5.2 22 227-248 2421-2442(2836)
173 COG4072 Uncharacterized protei 78.8 3.3 7.2E-05 36.0 4.3 51 211-268 93-144 (161)
174 COG1038 PycA Pyruvate carboxyl 76.6 2.3 4.9E-05 46.3 3.3 32 254-285 1080-1111(1149)
175 KOG0368 Acetyl-CoA carboxylase 75.0 4 8.7E-05 47.0 4.7 52 234-285 666-717 (2196)
176 PRK03934 phosphatidylserine de 74.4 4.4 9.5E-05 38.0 4.3 51 231-284 215-265 (265)
177 COG3608 Predicted deacylase [G 73.9 3.6 7.9E-05 40.2 3.7 32 254-286 257-288 (331)
178 PLN02528 2-oxoisovalerate dehy 73.6 3.5 7.7E-05 41.1 3.6 35 210-251 42-76 (416)
179 PF12700 HlyD_2: HlyD family s 73.2 6.4 0.00014 36.2 5.0 40 211-250 136-193 (328)
180 PF02749 QRPTase_N: Quinolinat 72.3 4.3 9.3E-05 31.6 3.1 20 230-249 49-68 (88)
181 TIGR01349 PDHac_trf_mito pyruv 71.0 4 8.7E-05 41.0 3.3 34 210-250 43-77 (435)
182 PRK03140 phosphatidylserine de 70.3 4.2 9.1E-05 38.0 3.1 64 211-284 195-258 (259)
183 KOG0369 Pyruvate carboxylase [ 69.5 3.7 7.9E-05 44.1 2.8 32 254-285 1107-1138(1176)
184 KOG0238 3-Methylcrotonyl-CoA c 69.4 3.9 8.5E-05 42.4 2.9 32 254-285 602-633 (670)
185 PRK02597 rpoC2 DNA-directed RN 69.1 13 0.00028 42.5 7.1 35 230-264 405-446 (1331)
186 PRK11856 branched-chain alpha- 68.4 5.5 0.00012 39.2 3.7 35 210-251 46-80 (411)
187 TIGR03309 matur_yqeB selenium- 67.7 6.2 0.00014 37.3 3.7 35 250-285 161-195 (256)
188 TIGR02971 heterocyst_DevB ABC 64.5 8 0.00017 36.3 3.8 33 208-248 203-235 (327)
189 cd06255 M14_ASTE_ASPA_like_5 A 62.6 9.8 0.00021 35.9 4.0 32 253-285 231-262 (293)
190 PRK10871 nlpD lipoprotein NlpD 60.9 15 0.00032 35.8 5.0 19 266-284 271-289 (319)
191 cd06251 M14_ASTE_ASPA_like_1 A 60.9 11 0.00024 35.3 4.1 34 251-285 217-250 (287)
192 PLN02744 dihydrolipoyllysine-r 60.5 8.1 0.00018 40.1 3.3 26 260-285 125-150 (539)
193 PF07831 PYNP_C: Pyrimidine nu 59.9 8.2 0.00018 29.6 2.5 20 266-285 35-54 (75)
194 cd06253 M14_ASTE_ASPA_like_3 A 59.8 11 0.00023 35.8 3.8 32 253-285 229-260 (298)
195 cd06250 M14_PaAOTO_like An unc 59.2 12 0.00026 36.6 4.1 32 253-285 289-320 (359)
196 cd06254 M14_ASTE_ASPA_like_4 A 59.1 13 0.00027 35.0 4.1 34 251-285 221-254 (288)
197 PRK04192 V-type ATP synthase s 58.9 16 0.00034 38.4 5.1 53 230-284 122-177 (586)
198 TIGR02644 Y_phosphoryl pyrimid 58.6 9.2 0.0002 38.3 3.2 40 209-248 333-396 (405)
199 cd01134 V_A-ATPase_A V/A-type 58.5 22 0.00047 35.4 5.7 43 230-273 53-98 (369)
200 PF01551 Peptidase_M23: Peptid 58.4 23 0.00049 27.2 4.8 12 211-222 15-26 (96)
201 TIGR02645 ARCH_P_rylase putati 58.1 17 0.00037 37.4 5.1 41 245-285 405-469 (493)
202 PF01551 Peptidase_M23: Peptid 57.6 9 0.0002 29.5 2.4 21 230-250 55-75 (96)
203 PF09891 DUF2118: Uncharacteri 57.5 9.2 0.0002 33.4 2.6 38 237-285 75-112 (150)
204 PRK11892 pyruvate dehydrogenas 57.3 11 0.00023 38.4 3.4 34 210-250 46-80 (464)
205 TIGR02994 ectoine_eutE ectoine 56.6 14 0.00031 35.6 4.1 31 254-285 256-286 (325)
206 cd06910 M14_ASTE_ASPA_like_7 A 56.2 20 0.00043 33.4 4.9 47 231-284 225-272 (272)
207 PRK14698 V-type ATP synthase s 55.8 22 0.00048 39.7 5.8 54 230-285 122-178 (1017)
208 TIGR01042 V-ATPase_V1_A V-type 54.4 26 0.00056 36.9 5.7 53 231-285 123-178 (591)
209 cd06252 M14_ASTE_ASPA_like_2 A 54.3 24 0.00051 33.7 5.1 34 251-285 242-275 (316)
210 PF02749 QRPTase_N: Quinolinat 51.3 12 0.00027 29.0 2.2 24 262-285 44-67 (88)
211 PF05896 NQRA: Na(+)-transloca 50.8 9.9 0.00022 36.0 1.9 31 253-283 29-59 (257)
212 COG4942 Membrane-bound metallo 49.9 24 0.00051 35.7 4.5 59 210-284 332-390 (420)
213 PRK04350 thymidine phosphoryla 49.8 27 0.0006 35.9 5.0 40 246-285 398-461 (490)
214 TIGR00163 PS_decarb phosphatid 48.5 13 0.00029 34.2 2.3 48 235-283 189-236 (238)
215 TIGR02643 T_phosphoryl thymidi 48.1 13 0.00027 37.8 2.3 20 230-249 384-403 (437)
216 KOG0557 Dihydrolipoamide acety 48.1 15 0.00033 37.5 2.8 25 261-285 52-76 (470)
217 PRK05820 deoA thymidine phosph 47.4 13 0.00029 37.6 2.3 22 228-249 383-404 (440)
218 COG0157 NadC Nicotinate-nucleo 46.5 15 0.00032 35.3 2.4 21 230-250 68-88 (280)
219 TIGR01043 ATP_syn_A_arch ATP s 45.8 40 0.00087 35.4 5.5 53 230-284 119-174 (578)
220 TIGR03327 AMP_phos AMP phospho 45.6 34 0.00073 35.4 4.9 39 247-285 408-470 (500)
221 PRK06078 pyrimidine-nucleoside 45.0 15 0.00033 37.2 2.3 41 210-250 336-400 (434)
222 PRK02597 rpoC2 DNA-directed RN 44.9 28 0.00061 39.9 4.5 23 225-247 947-969 (1331)
223 PRK09603 bifunctional DNA-dire 44.8 32 0.00068 42.3 5.0 22 226-247 2612-2633(2890)
224 PF06898 YqfD: Putative stage 43.3 29 0.00063 34.2 3.9 34 250-283 186-226 (385)
225 PRK02259 aspartoacylase; Provi 42.7 17 0.00037 34.3 2.2 61 211-282 216-281 (288)
226 PRK11637 AmiB activator; Provi 42.7 38 0.00081 33.6 4.6 20 230-249 381-400 (428)
227 PF03811 Zn_Tnp_IS1: InsA N-te 42.6 11 0.00025 25.2 0.7 14 1-14 1-14 (36)
228 TIGR02645 ARCH_P_rylase putati 41.8 17 0.00038 37.4 2.2 40 210-249 414-470 (493)
229 PRK09603 bifunctional DNA-dire 41.5 38 0.00083 41.6 5.1 18 267-284 2616-2633(2890)
230 cd06848 GCS_H Glycine cleavage 41.4 26 0.00056 27.5 2.7 27 259-285 26-53 (96)
231 PRK10871 nlpD lipoprotein NlpD 41.0 31 0.00066 33.7 3.6 41 209-249 229-291 (319)
232 PRK04350 thymidine phosphoryla 40.8 19 0.00041 37.1 2.2 41 209-249 405-462 (490)
233 PRK05820 deoA thymidine phosph 40.6 44 0.00095 34.0 4.8 37 249-285 336-403 (440)
234 TIGR02876 spore_yqfD sporulati 40.1 30 0.00065 34.2 3.5 31 253-283 186-223 (382)
235 CHL00117 rpoC2 RNA polymerase 40.1 37 0.0008 39.2 4.5 38 228-265 404-449 (1364)
236 PRK00044 psd phosphatidylserin 39.2 26 0.00057 33.2 2.8 48 235-284 237-285 (288)
237 TIGR03327 AMP_phos AMP phospho 39.1 21 0.00045 36.9 2.2 40 210-249 415-471 (500)
238 CHL00117 rpoC2 RNA polymerase 38.9 81 0.0017 36.5 6.9 74 210-286 350-425 (1364)
239 TIGR02644 Y_phosphoryl pyrimid 37.9 54 0.0012 33.0 4.9 38 248-285 328-396 (405)
240 PRK06149 hypothetical protein; 37.4 23 0.0005 39.0 2.4 42 208-249 441-496 (972)
241 KOG1668 Elongation factor 1 be 36.7 26 0.00055 32.8 2.3 39 212-255 168-207 (231)
242 COG1155 NtpA Archaeal/vacuolar 36.7 75 0.0016 33.4 5.7 54 230-284 120-175 (588)
243 TIGR00164 PS_decarb_rel phosph 35.3 1.1E+02 0.0023 27.2 5.9 70 208-285 71-152 (189)
244 TIGR02643 T_phosphoryl thymidi 33.7 67 0.0015 32.7 4.8 19 267-285 384-402 (437)
245 PRK11637 AmiB activator; Provi 33.7 38 0.00082 33.5 3.1 59 208-284 338-398 (428)
246 PRK11649 putative peptidase; P 33.5 38 0.00082 34.2 3.1 18 231-248 366-383 (439)
247 PRK05305 phosphatidylserine de 33.1 1.2E+02 0.0027 27.2 6.0 78 207-285 89-172 (206)
248 COG0739 NlpD Membrane proteins 32.3 33 0.00072 30.8 2.2 19 230-248 216-234 (277)
249 KOG2419 Phosphatidylserine dec 32.0 24 0.00053 37.8 1.5 33 211-251 887-919 (975)
250 COG4072 Uncharacterized protei 31.9 86 0.0019 27.4 4.5 26 259-284 97-122 (161)
251 cd01572 QPRTase Quinolinate ph 31.3 38 0.00081 31.9 2.5 21 230-250 62-82 (268)
252 PF13375 RnfC_N: RnfC Barrel s 31.2 84 0.0018 25.4 4.2 24 261-284 38-61 (101)
253 PRK08072 nicotinate-nucleotide 30.0 41 0.00088 32.0 2.5 21 230-250 68-88 (277)
254 PRK13380 glycine cleavage syst 30.0 48 0.001 28.5 2.7 33 253-285 35-68 (144)
255 TIGR02388 rpoC2_cyan DNA-direc 29.7 64 0.0014 36.9 4.2 23 225-247 945-967 (1227)
256 PF11475 VP_N-CPKC: Virion pro 27.9 8 0.00017 25.0 -1.8 10 5-14 16-25 (32)
257 PRK06096 molybdenum transport 27.2 47 0.001 31.8 2.4 20 230-249 65-84 (284)
258 PRK05742 nicotinate-nucleotide 26.7 50 0.0011 31.4 2.5 21 230-250 70-90 (277)
259 PRK06543 nicotinate-nucleotide 26.5 50 0.0011 31.6 2.4 21 230-250 69-89 (281)
260 PRK10718 RpoE-regulated lipopr 26.2 1.5E+02 0.0032 27.1 5.2 44 231-275 69-115 (191)
261 PF01333 Apocytochr_F_C: Apocy 25.5 25 0.00055 29.6 0.2 30 216-245 31-61 (118)
262 cd00291 SirA_YedF_YeeD SirA, Y 25.1 1.7E+02 0.0036 20.8 4.5 29 120-148 39-69 (69)
263 cd01568 QPRTase_NadC Quinolina 24.7 58 0.0013 30.5 2.5 21 230-250 61-81 (269)
264 PRK07428 nicotinate-nucleotide 24.5 57 0.0012 31.2 2.4 21 230-250 76-96 (288)
265 COG0739 NlpD Membrane proteins 24.2 1.5E+02 0.0033 26.5 5.0 35 246-284 199-233 (277)
266 COG0213 DeoA Thymidine phospho 24.2 67 0.0014 32.7 2.9 20 230-249 381-400 (435)
267 PRK05848 nicotinate-nucleotide 23.9 60 0.0013 30.8 2.4 21 230-250 62-82 (273)
268 PRK06978 nicotinate-nucleotide 23.8 60 0.0013 31.3 2.4 20 230-249 86-105 (294)
269 TIGR02388 rpoC2_cyan DNA-direc 23.7 95 0.0021 35.6 4.2 35 230-264 405-446 (1227)
270 PLN02716 nicotinate-nucleotide 23.4 62 0.0013 31.4 2.5 20 230-249 82-101 (308)
271 PRK14844 bifunctional DNA-dire 23.2 1.5E+02 0.0032 36.9 5.8 57 230-286 2322-2443(2836)
272 cd01573 modD_like ModD; Quinol 23.1 63 0.0014 30.4 2.4 21 230-250 60-80 (272)
273 PRK07896 nicotinate-nucleotide 23.0 64 0.0014 31.0 2.4 21 230-250 80-100 (289)
274 PRK06106 nicotinate-nucleotide 22.8 65 0.0014 30.8 2.4 21 230-250 74-94 (281)
275 PF06572 DUF1131: Protein of u 22.8 1.1E+02 0.0023 27.5 3.7 44 232-275 49-95 (171)
276 TIGR03077 not_gcvH glycine cle 22.6 85 0.0019 25.8 2.8 29 257-285 25-54 (110)
277 cd01572 QPRTase Quinolinate ph 22.5 91 0.002 29.3 3.3 25 261-285 56-80 (268)
278 PRK09016 quinolinate phosphori 22.1 68 0.0015 31.0 2.4 21 230-250 89-109 (296)
279 PF03259 Robl_LC7: Roadblock/L 21.8 3.3E+02 0.0071 19.9 6.0 40 111-150 43-82 (91)
280 PF01206 TusA: Sulfurtransfera 21.4 1.3E+02 0.0028 21.7 3.3 28 121-148 41-70 (70)
281 PRK08385 nicotinate-nucleotide 21.2 73 0.0016 30.3 2.5 21 230-250 62-82 (278)
282 PTZ00403 phosphatidylserine de 20.8 80 0.0017 31.2 2.7 49 234-285 290-339 (353)
283 cd03695 CysN_NodQ_II CysN_NodQ 20.7 2.7E+02 0.0059 21.0 5.1 60 216-282 18-80 (81)
284 PRK06148 hypothetical protein; 20.6 54 0.0012 36.4 1.6 19 232-250 505-523 (1013)
285 TIGR01334 modD putative molybd 20.6 75 0.0016 30.3 2.4 21 230-250 64-84 (277)
286 TIGR00078 nadC nicotinate-nucl 20.6 78 0.0017 29.7 2.5 21 230-250 58-78 (265)
287 PLN02964 phosphatidylserine de 20.6 94 0.002 33.2 3.3 36 210-253 555-590 (644)
288 PRK00624 glycine cleavage syst 20.3 1E+02 0.0022 25.6 2.8 31 255-285 25-56 (114)
No 1
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=100.00 E-value=9.1e-53 Score=386.88 Aligned_cols=263 Identities=64% Similarity=0.924 Sum_probs=208.4
Q ss_pred CCcccccCCCcccc-cccCCCCCCCchhhhhhhhhccCCCCCCCccccCCCCCCcceeeecccceeeEEEeeeeeeeecC
Q 023188 1 MASIWIPCPKISWV-APVGSTGGQQPQQQKQMLSFQNSSNSNPSLSFASSAPFSGFQCSIKKQSAVWKVQAKVNDVIAKK 79 (286)
Q Consensus 1 mas~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (286)
|||||+||+||.+. +..|.... ..+||+ .+||+|+|.++. ++++|..+|+||||+|||.+++
T Consensus 1 mas~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~f~~~~-------~~~~~~~~~~~~a~~ne~~~~~ 63 (274)
T PLN02983 1 MASLSVPCAKTAAAAANVGSRLS--------RSSFRL--QPKPNISFPSKG-------PNPKRSAVPKVKAQLNEVAVDG 63 (274)
T ss_pred CCccccCcccceeeccccccccc--------cccccc--CCCCCcccccCC-------CCcccceeeeEEeeeceeeecc
Confidence 99999999999987 33552222 234555 789999999973 6899999999999999999999
Q ss_pred CCCCcccccCCCcccCchhhhccc-----cCCCCChHHHHHHHHHHHHHHHHHhhCCCcEEEEEeCCEEEEEEeccCCCC
Q 023188 80 PLNSTAAVDTGSEVASSEEKVESA-----EKKIPDASAISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQP 154 (286)
Q Consensus 80 ~~n~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~i~eI~eLiklvd~s~I~ELelk~~d~~L~Irk~~~~~~ 154 (286)
|||++++..+++.++.++++++.+ +++++|+++|+.||.|+.+|+|++|++||.||+||+.||+|.|||++.+++
T Consensus 64 ~sn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~f~~qv~~lv~lv~~~di~e~~lk~~~~e~~irkkeal~~ 143 (274)
T PLN02983 64 SSNSAKSDDPKSEVAPSEPKDEPPSNSSSKPNLPDEESISEFMTQVSSLVKLVDSRDIVELQLKQLDCELVIRKKEALPQ 143 (274)
T ss_pred ccccccccCCcccccccccccccccccCCCcccCCHHHHHHHHHHHHHHHhhhccccceeeeccccceEEEEecccccCC
Confidence 999999999999999999888773 589999999999999999999999999999999999999999999998865
Q ss_pred Ccc---ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCccCCcceEEEccCCCCCC
Q 023188 155 PEC---IVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPALPPPAK--KSSHPPLKCPMAGTFYRCPAPGEP 229 (286)
Q Consensus 155 ~~~---~~~~~~~~~~~~~p~~~~~~~~a~~~~a~~~a~~~~~~~~~a~~~~~~--~~~~~~I~AP~~G~~~~~p~~~~~ 229 (286)
+++ +..++.+.++...|.. ++++.. +.+.++..++ ++++.+.+++ .+++..|+|||.|+||+.|.+++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~p~~---~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~s~~~~V~APmaGtf~r~p~pge~ 217 (274)
T PLN02983 144 PPPPAPVVMMQPPPPHAMPPAS---PPAAQP-APSAPASSPP--PTPASPPPAKAPKSSHPPLKSPMAGTFYRSPAPGEP 217 (274)
T ss_pred CCCCCceEEecCCCcccCCCCC---CcccCC-CCCCCCCCCC--CCCCCCCCCCCCcCCCCeEeCCcCeEEEeccCCCCc
Confidence 431 2223222222222211 111011 0001111111 1111121222 267789999999999999999999
Q ss_pred ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
|+|++||.|++||+||+||+||++++|+|+.+|+|++|++++|+.|.+|++|++|+|
T Consensus 218 w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IEP 274 (274)
T PLN02983 218 PFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIEP 274 (274)
T ss_pred ceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEecC
Confidence 999999999999999999999999999999999999999999999999999999987
No 2
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.98 E-value=2.4e-31 Score=229.43 Aligned_cols=156 Identities=44% Similarity=0.736 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEeCCEEEEEEeccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023188 115 AFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASS 194 (286)
Q Consensus 115 ~~i~eI~eLiklvd~s~I~ELelk~~d~~L~Irk~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~~a~~~a~~~~~ 194 (286)
|++++|++||++|++++|+||+|+.+|++|+|+|........ . .++ .+.+... +.+.... +..++. .
T Consensus 1 Md~~~Ik~Li~~~~~s~l~elei~~~~~~l~l~k~~~~~~~~-~--~~~----~~~~~~~-~~~~~~~--~~~~~~-~-- 67 (156)
T TIGR00531 1 MNIREIKELIKLIEESGITELELKEEEFEVRLSKAAAAAKKS-A--VQQ----AAAPVPA-QVPAAPS--AQAPAP-A-- 67 (156)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEeCCEEEEEEecCCCCccc-c--ccc----cCCCccc-cCCCCCC--CCCCCC-C--
Confidence 678999999999999999999999999999999964211000 0 000 0000000 0000000 000000 0
Q ss_pred CCCCCCCCCCCCCCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCc
Q 023188 195 VPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS 274 (286)
Q Consensus 195 ~~~~a~~~~~~~~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~ 274 (286)
...+. + .....+...|+|||+|+||++|+|+.+|||++||.|++||+||+||+|||+++|+|+++|+|++|++++|+.
T Consensus 68 ~~~~~-~-~~~~~~~~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~ 145 (156)
T TIGR00531 68 VCAPA-P-AKADKKGHFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQP 145 (156)
T ss_pred CCCCC-c-ccccCCCCEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCE
Confidence 00000 0 111123457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEc
Q 023188 275 VSVDTPLLVIV 285 (286)
Q Consensus 275 V~~G~~L~~Ie 285 (286)
|+||++||+|+
T Consensus 146 V~~Gq~L~~i~ 156 (156)
T TIGR00531 146 VEYGQPLIVIE 156 (156)
T ss_pred ECCCCEEEEEC
Confidence 99999999985
No 3
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.97 E-value=9e-31 Score=225.58 Aligned_cols=155 Identities=41% Similarity=0.693 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHhhCCCcEEEEEeCCEEEEEEeccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023188 115 AFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASS 194 (286)
Q Consensus 115 ~~i~eI~eLiklvd~s~I~ELelk~~d~~L~Irk~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~~a~~~a~~~~~ 194 (286)
|++++|++||++|++++|+||+|+.+|++|+|+|.......+ +. ... ...+... .+.+.. +... ++
T Consensus 1 Md~~~I~~Li~~~~~s~l~ele~~~~~~~i~l~k~~~~~~~~-~~-~~~----~~~p~~~--~~~~~~----~~~~-~~- 66 (155)
T PRK06302 1 MDIRKIKKLIELVDESGISEFEIKEGEESVRISRAAAAPVAP-VA-QQA----AAAPVAA--APAAAA----AAAA-AP- 66 (155)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEcCCEEEEEEeCCCCCccc-cc-ccc----ccCCCCC--CCCCCC----cccc-CC-
Confidence 678999999999999999999999999999998864211000 00 000 0000000 000000 0000 00
Q ss_pred CCCCCCCCCCCCCCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCc
Q 023188 195 VPVPALPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS 274 (286)
Q Consensus 195 ~~~~a~~~~~~~~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~ 274 (286)
.+.+.. +....+...|+|||+|+||++|+|+.+|||++||.|++||+||+||+||++++|+|+++|+|++|++++|+.
T Consensus 67 ~~~~~~--~~~~~~~~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~ 144 (155)
T PRK06302 67 AAAPAA--AAAEAEGHVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQP 144 (155)
T ss_pred CCCCCC--CccCCCCCEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCE
Confidence 000000 111123458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEc
Q 023188 275 VSVDTPLLVIV 285 (286)
Q Consensus 275 V~~G~~L~~Ie 285 (286)
|+||++||+|+
T Consensus 145 V~~Gq~L~~i~ 155 (155)
T PRK06302 145 VEFGQPLFVIE 155 (155)
T ss_pred eCCCCEEEEeC
Confidence 99999999985
No 4
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.95 E-value=2.5e-27 Score=201.05 Aligned_cols=140 Identities=39% Similarity=0.618 Sum_probs=101.0
Q ss_pred HHHHHHHHhhCCCcEEEEEeCCEEEEEEeccCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023188 120 VSDLVKLVDSRDIMELQMKQSDCELIVRKKEALQPPECIVNMPPTMPHMMYPTPPPAAPAAAPTPAPAPASPASSVPVPA 199 (286)
Q Consensus 120 I~eLiklvd~s~I~ELelk~~d~~L~Irk~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~~a~~~a~~~~~~~~~a 199 (286)
|++|+++++++++.+++++.+++++++++....... ....... . ... +..... .++.. ...+.
T Consensus 1 i~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~--~-~~~-----~~~~~~-----~~~~~---~~~~~ 63 (140)
T COG0511 1 IKELIKLVVESDGTEFEVKVEEGEVRLSRKTPVVQD-VPAPAPI--E-ASS-----PSAAAA-----QPAAS---APAPA 63 (140)
T ss_pred CcchhhheeeeCcEEEEEEeCCcEEEEeeccccccc-ccccccc--c-ccc-----cccccc-----Ccccc---cccCC
Confidence 468999999999999999999999999887511000 0000000 0 000 000000 00000 00000
Q ss_pred CCCCCCCCCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCC
Q 023188 200 LPPPAKKSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDT 279 (286)
Q Consensus 200 ~~~~~~~~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~ 279 (286)
+....+...|+|||+|+||+ .||++||+|++||+||+||+|||+|+|.|+.+|+|++|++++||.|++||
T Consensus 64 ---~~~~~~~~~V~SPm~Gtv~~-------~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~ 133 (140)
T COG0511 64 ---PAAAAGGTQVTSPMVGTVYK-------PFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGD 133 (140)
T ss_pred ---ccccccCceEecCcceEEEE-------EeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCC
Confidence 11111456899999999999 89999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcC
Q 023188 280 PLLVIVP 286 (286)
Q Consensus 280 ~L~~Iep 286 (286)
+|++|++
T Consensus 134 ~L~~I~~ 140 (140)
T COG0511 134 PLAVIEP 140 (140)
T ss_pred EEEEecC
Confidence 9999985
No 5
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.70 E-value=8.6e-18 Score=127.69 Aligned_cols=73 Identities=41% Similarity=0.554 Sum_probs=68.1
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
.|++|+.|.+++.. ....|+|++||.|++||+||+||+||+.++|+|+++|+|.++++++|+.|.+|++|++|
T Consensus 2 ~i~~P~~G~~~~~~-~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 2 EIKAPMLGEVMEEG-TITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEESSSSEEEEEE-EEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred EEECCCCccEEEec-ceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 58999999988754 55669999999999999999999999999999999999999999999999999999986
No 6
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.70 E-value=6.6e-17 Score=121.66 Aligned_cols=68 Identities=21% Similarity=0.429 Sum_probs=66.2
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.|+||+.|++++ |+|++||.|++||+|++||+||+.++|+|+.+|+|.++++++|+.|..|++|++|.
T Consensus 4 ~v~a~~~G~i~~-------~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 4 DVRAEIVASVLE-------VVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred EEeCCCCEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 599999999999 99999999999999999999999999999999999999999999999999999884
No 7
>PRK07051 hypothetical protein; Validated
Probab=99.68 E-value=2.1e-16 Score=121.91 Aligned_cols=76 Identities=43% Similarity=0.766 Sum_probs=73.5
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+||+.|+||+++.+..+++|++||.|++||.|+.||+||+.++|+|+.+|+|.++++++|+.|..|++|++|+
T Consensus 4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999999985
No 8
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.66 E-value=7.7e-16 Score=129.82 Aligned_cols=72 Identities=36% Similarity=0.555 Sum_probs=68.7
Q ss_pred CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.+...|+||+.|++++ |+|++||.|++||.|++||+|||.++|.|+.+|+|.+|+++.||.|..|++|++|.
T Consensus 59 ~~~~~v~Ap~~G~V~~-------i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 130 (130)
T PRK06549 59 AGADAMPSPMPGTILK-------VLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITIG 130 (130)
T ss_pred CCCcEEECCCCEEEEE-------EEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEeC
Confidence 3566899999999999 99999999999999999999999999999999999999999999999999999873
No 9
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.66 E-value=3.4e-16 Score=117.07 Aligned_cols=68 Identities=38% Similarity=0.568 Sum_probs=66.4
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.|+||++|+|++ |++++||+|++||+|+.||+||+..+|.++.+|+|.++++++|+.|..|++|++|+
T Consensus 3 ~i~a~~~G~i~~-------~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 3 KVYASMAGNVWK-------IVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred eEeCCCCEEEEE-------EEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 689999999999 99999999999999999999999999999999999999999999999999999986
No 10
>PRK06748 hypothetical protein; Validated
Probab=99.65 E-value=5.7e-16 Score=121.44 Aligned_cols=69 Identities=22% Similarity=0.297 Sum_probs=66.2
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe-cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA-MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa-mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+|||.|++.+ |+|++||.|++||+|++||+ +|.+.+|+||.+|+|.+|++++|+.|..|++|+.|+
T Consensus 5 ~~v~sp~~G~I~~-------w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~ 74 (83)
T PRK06748 5 EGVYSPCYGKVEK-------LFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVR 74 (83)
T ss_pred eEEecCCcEEEEE-------EEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 4699999999999 99999999999999999999 678899999999999999999999999999999986
No 11
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.61 E-value=3.7e-15 Score=128.75 Aligned_cols=70 Identities=36% Similarity=0.644 Sum_probs=67.7
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
+...|+||+.|++++ |+|++||.|++||.|++||+|||.++|.|+.+|+|.++++++|+.|..|++|++|
T Consensus 83 ~~~~v~ap~~G~I~~-------~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 83 GENVVTAPMPGKILR-------ILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCCEEECCCCeEEEE-------EEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 456799999999999 9999999999999999999999999999999999999999999999999999987
No 12
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.53 E-value=4.3e-14 Score=102.10 Aligned_cols=67 Identities=42% Similarity=0.694 Sum_probs=64.7
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
.|+||+.|+|.+ |+++.||.|++||.|+.|+++|+..+|+|+.+|+|..+++++|+.|..|++|+.|
T Consensus 1 ~v~a~~~G~v~~-------~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 1 EVTAPMPGTVVK-------VLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred CccCCccEEEEE-------EEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 479999999998 9999999999999999999999999999999999999999999999999999975
No 13
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.43 E-value=3.6e-13 Score=137.55 Aligned_cols=71 Identities=34% Similarity=0.545 Sum_probs=68.0
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+...|+|||+|++++ |+|++||.|++||+|++||+|||+++|+||.+|+|.++++++|+.|..|++|++|+
T Consensus 524 ~~~~v~apm~G~V~~-------~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~ 594 (596)
T PRK14042 524 GPGDITVAIPGSIIA-------IHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVE 594 (596)
T ss_pred CCCeEecCcceEEEE-------EEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEe
Confidence 334799999999999 99999999999999999999999999999999999999999999999999999986
No 14
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=99.35 E-value=1.9e-12 Score=132.31 Aligned_cols=73 Identities=42% Similarity=0.637 Sum_probs=69.9
Q ss_pred CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
.....|+||+.|+|++ |+|++||.|++||+|++||+|||.++|+|+.+|+|+++++++|+.|+.|++|++|+|
T Consensus 520 ~~~~~V~Ap~~G~v~~-------~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~~ 592 (592)
T PRK09282 520 SAPGAVTSPMPGTVVK-------VKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIEP 592 (592)
T ss_pred CCCceEeCCCcEEEEE-------EEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEecC
Confidence 3446899999999999 899999999999999999999999999999999999999999999999999999987
No 15
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.35 E-value=2.1e-12 Score=120.01 Aligned_cols=64 Identities=31% Similarity=0.491 Sum_probs=61.2
Q ss_pred cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
..|++.+ |+|++||.|++||+|++||+||+.++|+||.+|+|+++++++|+.|..|++|+.|++
T Consensus 15 ~~g~~~~-------~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~ 78 (371)
T PRK14875 15 TEGKVAG-------WLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVAD 78 (371)
T ss_pred ceEEEEE-------EEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEec
Confidence 4689999 999999999999999999999999999999999999999999999999999999863
No 16
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.34 E-value=5.6e-12 Score=94.13 Aligned_cols=61 Identities=48% Similarity=0.724 Sum_probs=58.7
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
.|++++ |++++||.|++||.|+.||+||+..+|+||.+|+|++++++.|+.|..|+.|++|
T Consensus 13 ~g~~~~-------~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 13 DGTVVK-------WLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CEEEEE-------EEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 588888 9999999999999999999999999999999999999999999999999999975
No 17
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=99.34 E-value=1.8e-12 Score=132.26 Aligned_cols=67 Identities=40% Similarity=0.647 Sum_probs=64.3
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeE
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPL 281 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L 281 (286)
+...|+|||+|++++ |+|++||.|++||+|++||+|||+++|.|+.+|+|.+|++++|+.|..|++|
T Consensus 516 ~~~~v~ap~~G~v~~-------~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 516 AGTPVTAPIAGSIVK-------VKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred CCCeEeCCccEEEEE-------EEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 445799999999999 9999999999999999999999999999999999999999999999999976
No 18
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=99.33 E-value=3.3e-12 Score=130.58 Aligned_cols=70 Identities=37% Similarity=0.681 Sum_probs=67.4
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
...|+|||.|+|++ |+|++||.|++||+|++||+|||.++|.||.+|+|.++++++|+.|..|++|++|.
T Consensus 524 ~~~V~Ap~~G~I~~-------~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 524 GEPVTAPLAGNIFK-------VIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred CceEECCccEEEEE-------EEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 45799999999999 99999999999999999999999999999999999999999999999999999873
No 19
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=99.32 E-value=3.1e-12 Score=127.25 Aligned_cols=62 Identities=31% Similarity=0.469 Sum_probs=59.9
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.|++++ |+|++||.|++||+||+||+||+.++|+|+++|+|.+|++++||.|..|++|++|+
T Consensus 105 eG~I~~-------w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~ 166 (463)
T PLN02226 105 DGTLAT-------FLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIIS 166 (463)
T ss_pred eEEEEE-------EEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEec
Confidence 577888 99999999999999999999999999999999999999999999999999999985
No 20
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=99.31 E-value=4.4e-12 Score=127.64 Aligned_cols=72 Identities=33% Similarity=0.533 Sum_probs=68.8
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
....+.|||+|++.. ..|++|+.|.+||+|+++|+|||++.|+|+.+|+|+++.++.|+.|..|++|++|++
T Consensus 574 ~~~~l~aPMpG~v~~-------v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~~ 645 (645)
T COG4770 574 SSGELLAPMPGTVVS-------VAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFEE 645 (645)
T ss_pred CCCceecCCCceEEE-------EEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEecC
Confidence 445799999999999 899999999999999999999999999999999999999999999999999999975
No 21
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.30 E-value=4.8e-12 Score=138.01 Aligned_cols=72 Identities=31% Similarity=0.552 Sum_probs=69.2
Q ss_pred CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.+...|.|||.|++++ |+|++||.|++||+|++||+|||.++|.|+.+|+|++|++++|+.|..|++|+.|+
T Consensus 1130 ~~~~~v~a~~~G~v~~-------~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1130 EGAEQVESEYAGNFWK-------VLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred CCCcEEeCCceEEEEE-------EEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 4567899999999999 99999999999999999999999999999999999999999999999999999985
No 22
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=99.30 E-value=5.3e-12 Score=136.99 Aligned_cols=72 Identities=32% Similarity=0.547 Sum_probs=68.7
Q ss_pred CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.+...|.|||.|++++ |+|++||.|++||+|++||+|||.++|.|+.+|+|++|++++|+.|+.|++|++|+
T Consensus 1072 ~~~~~I~a~~~G~v~~-------~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1072 GNPAHVGAPMPGVIIE-------VKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred ccCceeecCCCcEEEE-------EEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 3455799999999999 99999999999999999999999999999999999999999999999999999985
No 23
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.27 E-value=9.1e-12 Score=135.32 Aligned_cols=72 Identities=32% Similarity=0.543 Sum_probs=69.1
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
+...|.|||.|++++ ++|++||.|++||+|++||+|||.++|.||.+|+|++|++++|+.|+.|++|+.|++
T Consensus 1075 ~~~~v~apm~G~v~~-------i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~~ 1146 (1146)
T PRK12999 1075 NPGHVGAPMPGSVVT-------VLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELEP 1146 (1146)
T ss_pred CCceEeCCceEEEEE-------EEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEcC
Confidence 445799999999999 999999999999999999999999999999999999999999999999999999985
No 24
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=99.27 E-value=1.1e-11 Score=122.25 Aligned_cols=62 Identities=44% Similarity=0.619 Sum_probs=60.0
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.|++++ |+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++|+.|..|++|++|+
T Consensus 58 eg~I~~-------w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~ 119 (418)
T PTZ00144 58 EGTVVE-------WKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEID 119 (418)
T ss_pred eEEEEE-------EEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEc
Confidence 578888 99999999999999999999999999999999999999999999999999999986
No 25
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=99.22 E-value=2.1e-11 Score=119.57 Aligned_cols=62 Identities=37% Similarity=0.541 Sum_probs=59.8
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
-|++.+ |+|++||+|++||+|++||++|..+||.|+++|+|.+|++++|+.|..|++|++|+
T Consensus 16 EG~I~~-------W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~ 77 (404)
T COG0508 16 EGTIVE-------WLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIE 77 (404)
T ss_pred eEEEEE-------EecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEe
Confidence 478888 99999999999999999999999999999999999999999999999999999985
No 26
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=99.21 E-value=1.5e-11 Score=127.57 Aligned_cols=72 Identities=38% Similarity=0.581 Sum_probs=69.0
Q ss_pred CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.+..+|-|||+|++.. .+|+.||+|++||+|++||+|||+..|.||.+|+|.+++|.+|+.|+.|++|+.++
T Consensus 1077 ~Np~higApmpG~Vv~-------v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1077 GNPGHIGAPMPGVVVE-------VKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred CCccccCCCCCCceEE-------EEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 5667899999999999 89999999999999999999999999999999999999999999999999999875
No 27
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=99.19 E-value=4.3e-11 Score=117.51 Aligned_cols=62 Identities=35% Similarity=0.446 Sum_probs=60.3
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
-|++++ |+|++||.|++||.||+||+||+.++|+|+++|+|.++++++|+.|..|++|++|+
T Consensus 16 eg~i~~-------w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~ 77 (407)
T PRK05704 16 EATIAT-------WHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRID 77 (407)
T ss_pred eEEEEE-------EEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 489999 99999999999999999999999999999999999999999999999999999986
No 28
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=99.12 E-value=1.5e-10 Score=113.72 Aligned_cols=62 Identities=29% Similarity=0.442 Sum_probs=60.1
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
-|++++ |+|++||.|++||.||+||+||+.++|+|+++|+|.+|++++|+.|..|++|++|+
T Consensus 14 eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~ 75 (403)
T TIGR01347 14 EGTVAE-------WHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILE 75 (403)
T ss_pred eEEEEE-------EEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 488998 99999999999999999999999999999999999999999999999999999986
No 29
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.07 E-value=2.5e-10 Score=116.84 Aligned_cols=62 Identities=32% Similarity=0.425 Sum_probs=59.3
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
-|++++ |+|++||.|++||.||+||+||+.++|+|+++|+|.+|++++|+.|..|++|++|+
T Consensus 149 eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~ 210 (590)
T TIGR02927 149 EGTITQ-------WLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIG 210 (590)
T ss_pred eEEEEE-------EEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 466777 99999999999999999999999999999999999999999999999999999985
No 30
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.07 E-value=2.4e-10 Score=117.67 Aligned_cols=62 Identities=29% Similarity=0.347 Sum_probs=58.8
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
-|++.+ |+|++||.|++||.||+||+||+.++|+|+++|+|.+|++++|+.|..|++|+.|+
T Consensus 218 eg~v~~-------w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~ 279 (633)
T PRK11854 218 EVEVTE-------VMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFE 279 (633)
T ss_pred ceEEEE-------EEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 456666 99999999999999999999999999999999999999999999999999999985
No 31
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.04 E-value=4.8e-10 Score=115.46 Aligned_cols=62 Identities=27% Similarity=0.377 Sum_probs=59.5
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
-|++.+ |+|++||.|++||+|++||+||+.++|+|+.+|+|.+|++++|+.|..|++|++|+
T Consensus 14 eg~i~~-------~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~ 75 (633)
T PRK11854 14 EVEVTE-------ILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFE 75 (633)
T ss_pred eEEEEE-------EEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEe
Confidence 467777 99999999999999999999999999999999999999999999999999999986
No 32
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.99 E-value=7.7e-10 Score=112.27 Aligned_cols=74 Identities=26% Similarity=0.336 Sum_probs=63.4
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+-|..|. .. ......|+|++||.|++||.||+||+||+.++|+|+++|+|.+|+++.|+.|..|++|++|.
T Consensus 117 ~~~~~P~~g~-~~-eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 190 (546)
T TIGR01348 117 QEVTVPDIGD-IE-KVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLS 190 (546)
T ss_pred eEEeCCCCCC-cc-eeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEe
Confidence 4666666664 21 12223399999999999999999999999999999999999999999999999999999985
No 33
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=98.96 E-value=1.2e-09 Score=112.08 Aligned_cols=73 Identities=27% Similarity=0.407 Sum_probs=69.3
Q ss_pred CCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 207 SSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 207 ~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
.....|.|||+|++.. ..|++|++|++||.||++.+|||++-|.||.+|+|+++++.+|+.|+.|+.+++||+
T Consensus 1104 ~~~g~igAPMpG~vie-------ikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E~ 1176 (1176)
T KOG0369|consen 1104 GVKGHIGAPMPGTVIE-------IKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELEH 1176 (1176)
T ss_pred CCcccccCCCCCceEE-------EEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEccC
Confidence 3456899999999999 799999999999999999999999999999999999999999999999999999985
No 34
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=98.96 E-value=1.7e-09 Score=106.51 Aligned_cols=61 Identities=34% Similarity=0.452 Sum_probs=59.2
Q ss_pred eEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 218 GTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 218 G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
|++.+ |+|++||.|++||.||+||+||+.+++.++++|+|.++++++|+.|..|++|++|+
T Consensus 13 g~i~~-------w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~ 73 (416)
T PLN02528 13 CELLR-------WFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIM 73 (416)
T ss_pred EEEEE-------EEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 78888 99999999999999999999999999999999999999999999999999999885
No 35
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.93 E-value=1.9e-09 Score=109.26 Aligned_cols=74 Identities=32% Similarity=0.377 Sum_probs=62.7
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+-|..|. +. ......|+|++||.|++||.||+||+||+.++|+|+++|+|.++++++|+.|..|++|++|.
T Consensus 120 ~~~~~P~~g~-~~-eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~ 193 (547)
T PRK11855 120 VEVKVPDIGE-IT-EVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIE 193 (547)
T ss_pred eEEecCCCCC-cc-eeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEe
Confidence 3566665554 32 12223399999999999999999999999999999999999999999999999999999985
No 36
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=98.89 E-value=7.5e-10 Score=106.83 Aligned_cols=57 Identities=37% Similarity=0.522 Sum_probs=56.0
Q ss_pred ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
|+.++||.|++++.||.||++|...+|.||.+|+|++++|++||.|+.|+.|+.|+|
T Consensus 92 ~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~ 148 (457)
T KOG0559|consen 92 WLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISP 148 (457)
T ss_pred HhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecC
Confidence 999999999999999999999999999999999999999999999999999999975
No 37
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=98.89 E-value=1.1e-08 Score=72.55 Aligned_cols=64 Identities=38% Similarity=0.546 Sum_probs=60.6
Q ss_pred CCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 214 CPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 214 AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
++..|++.+ |++..|+.|..|+.++.++++|+...+.++.+|+|.+..+.+|+.|..|++|++|
T Consensus 11 ~~~~g~i~~-------~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 11 SMTEGTIVE-------WLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CCcEEEEEE-------EEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 456789988 9999999999999999999999999999999999999999999999999999975
No 38
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=98.87 E-value=5.3e-09 Score=106.24 Aligned_cols=64 Identities=28% Similarity=0.402 Sum_probs=61.4
Q ss_pred CcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 215 PMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 215 P~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+..|++++ |+|++||.|++||+||+||+||+.++|.++.+|+|.+++++.|+.|..|++|++|+
T Consensus 11 ~~~g~i~~-------~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~ 74 (546)
T TIGR01348 11 NEEGEVIE-------VLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLE 74 (546)
T ss_pred CCceEEEE-------EEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEe
Confidence 36789999 99999999999999999999999999999999999999999999999999999885
No 39
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=98.81 E-value=1e-08 Score=103.99 Aligned_cols=62 Identities=32% Similarity=0.362 Sum_probs=59.8
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.|++.. |+|++||.|++||+||+||+||+.++|.|+++|+|.++++++|+.|..|++|+.|+
T Consensus 15 ~g~i~~-------~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~ 76 (547)
T PRK11855 15 EVEVIE-------WLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIE 76 (547)
T ss_pred eEEEEE-------EEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEec
Confidence 478888 99999999999999999999999999999999999999999999999999999886
No 40
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=98.81 E-value=8.5e-09 Score=104.68 Aligned_cols=61 Identities=33% Similarity=0.529 Sum_probs=58.0
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEE
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVI 284 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~~L~~I 284 (286)
-|++.+ |+|++||.|++||.||+||++|..++|+++.+|+|.+|++++|+ .|..|++|++|
T Consensus 126 eg~I~~-------W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i 187 (539)
T PLN02744 126 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAIT 187 (539)
T ss_pred eeEEEE-------EEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEE
Confidence 377888 99999999999999999999999999999999999999999996 79999999987
No 41
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=98.81 E-value=9.2e-09 Score=101.92 Aligned_cols=62 Identities=39% Similarity=0.584 Sum_probs=59.6
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCc-cCCCCeEEEEc
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS-VSVDTPLLVIV 285 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~-V~~G~~L~~Ie 285 (286)
.|++.+ |+|++||.|+.||.||.||+||+.++|.|+.+|+|.+|+++.|+. |..|++|++|+
T Consensus 13 eg~i~~-------w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~ 75 (435)
T TIGR01349 13 TGNLAK-------WLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLV 75 (435)
T ss_pred eEEEEE-------EEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEe
Confidence 578888 999999999999999999999999999999999999999999999 99999999984
No 42
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=98.81 E-value=1.3e-08 Score=99.62 Aligned_cols=63 Identities=37% Similarity=0.525 Sum_probs=60.2
Q ss_pred cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|++.+ |+|++||.|++||.||.||+||+.++|.|+.+|+|.++++++|+.|..|++|++|.
T Consensus 15 ~~g~i~~-------w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~ 77 (411)
T PRK11856 15 TEGEIVE-------WLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIE 77 (411)
T ss_pred ceEEEEE-------EEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEe
Confidence 3588888 99999999999999999999999999999999999999999999999999999885
No 43
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=98.79 E-value=4.5e-09 Score=105.28 Aligned_cols=69 Identities=29% Similarity=0.493 Sum_probs=66.4
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..+.+||+|.+.+ .+|+.||+|.+||.|+++++|||.+-++|+.+|+|+.+.++.|+.|..|.+|++++
T Consensus 602 ~v~~aPMpG~Iek-------v~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 602 GVIVAPMPGIIEK-------VLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CceecCCCCeeee-------eeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 4699999999998 89999999999999999999999999999999999999999999999999999874
No 44
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=98.75 E-value=1.1e-08 Score=101.26 Aligned_cols=62 Identities=37% Similarity=0.558 Sum_probs=59.1
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCC-CccCCCCeEEEEc
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDG-KSVSVDTPLLVIV 285 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~G-d~V~~G~~L~~Ie 285 (286)
-|.+.+ |..++||++.+||+||+||++|..+++++..+|.+.+|++++| ..|..|.+|+.|.
T Consensus 52 eGnIvs-------W~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv 114 (470)
T KOG0557|consen 52 EGNIVS-------WKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV 114 (470)
T ss_pred CCceee-------EeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence 488888 9999999999999999999999999999999999999999999 8899999999874
No 45
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=98.71 E-value=2.9e-08 Score=99.26 Aligned_cols=62 Identities=40% Similarity=0.624 Sum_probs=58.8
Q ss_pred ceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCC-ccCCCCeEEEEc
Q 023188 217 AGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK-SVSVDTPLLVIV 285 (286)
Q Consensus 217 ~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd-~V~~G~~L~~Ie 285 (286)
-|++.+ |+|++||.|++||.|+.||++|+.++|.|+.+|+|.+|+++.|+ .|..|++|++|+
T Consensus 16 eg~i~~-------w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~ 78 (464)
T PRK11892 16 EGTLAK-------WLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLL 78 (464)
T ss_pred eeEEEE-------EEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEc
Confidence 377888 99999999999999999999999999999999999999999995 799999999985
No 46
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=98.69 E-value=3.2e-08 Score=101.46 Aligned_cols=63 Identities=25% Similarity=0.340 Sum_probs=59.6
Q ss_pred cceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 216 MAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 216 ~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|++++ |+|++||.|+.||.||+||+||+.++|.|+.+|+|.+++++.|+.|..|+.|++|+
T Consensus 15 ~eg~i~~-------w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~ 77 (590)
T TIGR02927 15 TEGTITQ-------WLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIG 77 (590)
T ss_pred cEEEEEE-------EEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEe
Confidence 3577888 99999999999999999999999999999999999999999999999999999874
No 47
>PRK01202 glycine cleavage system protein H; Provisional
Probab=98.38 E-value=8e-07 Score=74.62 Aligned_cols=56 Identities=30% Similarity=0.494 Sum_probs=50.3
Q ss_pred cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEE---EcCCCCccC---CCC-eEEEEcC
Q 023188 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEI---LAEDGKSVS---VDT-PLLVIVP 286 (286)
Q Consensus 231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~I---lve~Gd~V~---~G~-~L~~Iep 286 (286)
+.++|++|++||.++.||++|...+|.||.+|+|+++ +.++.+.|. ||+ -|++|++
T Consensus 44 lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~ 106 (127)
T PRK01202 44 LPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKP 106 (127)
T ss_pred cCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEe
Confidence 4469999999999999999999999999999999999 777888888 876 8988864
No 48
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=98.32 E-value=7.6e-07 Score=97.53 Aligned_cols=72 Identities=24% Similarity=0.480 Sum_probs=67.1
Q ss_pred CCCCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 206 KSSHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 206 ~~~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+.+...+++|.+|++.+ |.|+.|+.|.+||.-++||.|||.+++.+..+|+| ....++|+.++.|++|+.+.
T Consensus 682 enDpt~LrsPs~GKLl~-------ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~ 753 (2196)
T KOG0368|consen 682 ENDPTVLRSPSPGKLLQ-------YLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLT 753 (2196)
T ss_pred CCCcceecCCCCccceE-------EEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEee
Confidence 34567899999999999 99999999999999999999999999999999988 77889999999999999874
No 49
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.31 E-value=1.1e-06 Score=69.77 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=48.7
Q ss_pred cCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCc
Q 023188 213 KCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKS 274 (286)
Q Consensus 213 ~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~ 274 (286)
...+.|.++.. ++.++|+.|++||.|+.||++|+..+|.||.+|+|+++..+-++.
T Consensus 24 ~~~~lG~i~~i------~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 24 AQDLLGDIVFV------ELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred HHhhCCCEEEE------EecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 34467887775 788889999999999999999999999999999999998776654
No 50
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=98.20 E-value=5.9e-07 Score=86.84 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=55.2
Q ss_pred CccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 229 PAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 229 ~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+|||++||+|+.-|.||+++.+|...+|.+.++|+|++|+.+.++...+|++|+.++
T Consensus 83 eWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~e 139 (474)
T KOG0558|consen 83 EWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLE 139 (474)
T ss_pred eehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeee
Confidence 499999999999999999999999999999999999999999999999999999875
No 51
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=98.15 E-value=4.7e-06 Score=78.07 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=30.7
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
..|+||.+|+|..+.++.|+.|..|++|+.|.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~ 237 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVP 237 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEc
Confidence 479999999999999999999999999999854
No 52
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=98.14 E-value=7.1e-06 Score=80.48 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=60.8
Q ss_pred CCccCCcceEEEccCCCCCCcc-ccCCCEEecCCeEEEEEec--------------------------------------
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAF-VKVGDKVQKGQVVCIIEAM-------------------------------------- 250 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~-VkvGd~V~~Gq~L~~IEam-------------------------------------- 250 (286)
..|.+++.|.+.+ .+ +++||.|++||+|+.|+.-
T Consensus 124 ~~v~arv~G~V~~-------l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~ 196 (409)
T PRK09783 124 AIVQARAAGFIDK-------VYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEAD 196 (409)
T ss_pred EEEeCCcCEEEEE-------EEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHH
Confidence 4699999999988 67 8999999999999999831
Q ss_pred ----------CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 251 ----------KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 251 ----------K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.....|+||.+|+|.+..++.|+.|..|++||+|.
T Consensus 197 i~~l~~~~~~~~~~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~ 241 (409)
T PRK09783 197 IRRLIATRKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQ 241 (409)
T ss_pred HHHHHHcCCCCCcEEEECCCCeEEEEEECCCCCEECCCCeEEEEE
Confidence 11347999999999999999999999999999984
No 53
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=98.03 E-value=6.9e-06 Score=75.60 Aligned_cols=69 Identities=35% Similarity=0.457 Sum_probs=61.0
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCe-------------------------------------
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKL------------------------------------- 252 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~------------------------------------- 252 (286)
..|.+|..|++.. ++|++||.|++||+|+.|+....
T Consensus 27 ~~v~a~~~G~V~~-------i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~ 99 (322)
T TIGR01730 27 ADLAAEVAGKITK-------ISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAV 99 (322)
T ss_pred EEEEccccEEEEE-------EEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 4799999999998 89999999999999999965211
Q ss_pred ----------------------------------eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 ----------------------------------MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ----------------------------------~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
...|+||.+|+|..+.++.|+.|..|++|+.|.
T Consensus 100 s~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~ 166 (322)
T TIGR01730 100 SQADLDDAKAAVEAAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIV 166 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEE
Confidence 236999999999999999999999999999874
No 54
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=98.00 E-value=9.9e-06 Score=66.75 Aligned_cols=39 Identities=28% Similarity=0.441 Sum_probs=36.4
Q ss_pred cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA 269 (286)
Q Consensus 231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv 269 (286)
+-++|+.|++||.++.||++|+..+|.||.+|+|++++-
T Consensus 37 lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~ 75 (110)
T TIGR03077 37 LPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNI 75 (110)
T ss_pred CCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHH
Confidence 458899999999999999999999999999999999953
No 55
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=98.00 E-value=2.1e-05 Score=73.42 Aligned_cols=65 Identities=23% Similarity=0.348 Sum_probs=58.7
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
...|+||..|.|.. +++.||.|++||+|+.|.. .+|+||.+|+|. =++.+|-.|..|.-|..|.|
T Consensus 164 Er~IrAp~~Gi~~~--------~~~IGd~V~KGqvLa~I~~----~~V~APidGIVr-GlirdG~~V~~G~Ki~dIDP 228 (256)
T TIGR03309 164 ERVLRAPADGIVTP--------TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLR-GLIHEGLTVTEGLKIGDVDP 228 (256)
T ss_pred eEEEECCCCeEEee--------ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEE-EEecCCCCcCCCCEEEEECC
Confidence 45799999999986 8999999999999999975 799999999885 55689999999999999976
No 56
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=98.00 E-value=1.3e-05 Score=76.28 Aligned_cols=34 Identities=12% Similarity=0.261 Sum_probs=30.9
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
...|+||++|+|.++.++.|+.|..|++|+.|.+
T Consensus 208 ~~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~ 241 (346)
T PRK10476 208 DTTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLID 241 (346)
T ss_pred cCEEECCCCcEEEeeecCCCCCcCCCCeEEEEec
Confidence 3479999999999999999999999999998853
No 57
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.93 E-value=1.1e-05 Score=67.75 Aligned_cols=48 Identities=31% Similarity=0.437 Sum_probs=40.5
Q ss_pred CCCCCCccc---cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCC
Q 023188 224 PAPGEPAFV---KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAED 271 (286)
Q Consensus 224 p~~~~~~~V---kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~ 271 (286)
...|.-.|| ++|++|++||.+|.||+||+..+|.||.+|+|+++.-.-
T Consensus 33 ~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l 83 (127)
T TIGR00527 33 DELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDAL 83 (127)
T ss_pred hCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhh
Confidence 334444556 599999999999999999999999999999999987543
No 58
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.88 E-value=2.6e-05 Score=73.77 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=61.0
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC--------------------------------------
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK-------------------------------------- 251 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK-------------------------------------- 251 (286)
..|.++..|++.+ ++|++||.|++||+|+.|+...
T Consensus 48 v~i~~~v~G~V~~-------v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS 120 (310)
T PRK10559 48 VAIAPDVSGLITQ-------VNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMS 120 (310)
T ss_pred EEEccCCceEEEE-------EEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 4688999999999 8999999999999999998721
Q ss_pred --------------------------------eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 252 --------------------------------LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 252 --------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
-...|+||.+|+|.++.++.|+.|..|++|+.|-
T Consensus 121 ~~~~d~a~~~~~~a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv 186 (310)
T PRK10559 121 REEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALV 186 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEE
Confidence 0258999999999999999999999999999763
No 59
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.87 E-value=2.7e-05 Score=64.57 Aligned_cols=38 Identities=29% Similarity=0.430 Sum_probs=35.8
Q ss_pred cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEE
Q 023188 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL 268 (286)
Q Consensus 231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Il 268 (286)
+-++|+.|++||.||.||++|...+|.||.+|+|.++.
T Consensus 39 lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 39 LPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred CCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 45889999999999999999999999999999999993
No 60
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.87 E-value=1.9e-05 Score=67.83 Aligned_cols=57 Identities=25% Similarity=0.327 Sum_probs=46.7
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCC
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGK 273 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd 273 (286)
.....+.|.++.. .+-++|+.|++||.++.||+||+..+|.||.+|+|+++..+-.+
T Consensus 37 d~aq~~lG~I~~v------~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 37 DYAQTMAGDVVFV------RLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred HHHHHhcCCEEEE------EcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 4555677877652 23358999999999999999999999999999999998866433
No 61
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.85 E-value=2.8e-05 Score=73.39 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=30.2
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+||++|+|..+.+..|+.|..|++|+.|.
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~ 235 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLS 235 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEe
Confidence 48999999999999999999999999999874
No 62
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.79 E-value=3.8e-05 Score=74.88 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=30.2
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+||.+|+|..+.++.|+.|..|++|+.|-
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv 247 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVV 247 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEE
Confidence 47999999999999999999999999999875
No 63
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.79 E-value=3.9e-05 Score=74.13 Aligned_cols=69 Identities=23% Similarity=0.345 Sum_probs=59.7
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC--------------------------------------
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK-------------------------------------- 251 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK-------------------------------------- 251 (286)
..|.+++.|++.. .+|++||.|++||+|+.|+...
T Consensus 64 ~~l~~~v~G~V~~-------v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~i 136 (385)
T PRK09578 64 AEVRARVAGIVTA-------RTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAV 136 (385)
T ss_pred EEEeccCcEEEEE-------EECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4799999999988 7999999999999999997631
Q ss_pred ---------------------------------eeeeEecCCCeEEEEEEcCCCCccCCC--CeEEEEc
Q 023188 252 ---------------------------------LMNEIEADQSGTIAEILAEDGKSVSVD--TPLLVIV 285 (286)
Q Consensus 252 ---------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G--~~L~~Ie 285 (286)
-...|+||++|+|.+.+++.|+.|..| ++|+.|.
T Consensus 137 S~~~~~~~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~ 205 (385)
T PRK09578 137 SERDYTEAVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVE 205 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEE
Confidence 124899999999999999999999885 5888763
No 64
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=97.64 E-value=9.3e-05 Score=72.04 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=59.4
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC-------------------------------------
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK------------------------------------- 251 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK------------------------------------- 251 (286)
...|.+...|++.+ .+|++||.|++||+|+.|+...
T Consensus 65 ~~~l~a~vsG~V~~-------v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~ 137 (397)
T PRK15030 65 IAEVRPQVSGIILK-------RNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQY 137 (397)
T ss_pred EEEEEecCcEEEEE-------EEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34699999999998 7999999999999999997421
Q ss_pred ----------------------------------eeeeEecCCCeEEEEEEcCCCCccCCCCe--EEEE
Q 023188 252 ----------------------------------LMNEIEADQSGTIAEILAEDGKSVSVDTP--LLVI 284 (286)
Q Consensus 252 ----------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~--L~~I 284 (286)
-...|+||++|+|.+.+++.|+.|..|++ |+.|
T Consensus 138 is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 206 (397)
T PRK15030 138 ISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATV 206 (397)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCEECCCCCceEEEE
Confidence 12579999999999999999999999985 6765
No 65
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=97.64 E-value=9.9e-05 Score=71.41 Aligned_cols=68 Identities=16% Similarity=0.292 Sum_probs=59.1
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC--------------------------------------
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK-------------------------------------- 251 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK-------------------------------------- 251 (286)
..|.++..|++.+ .+|++||.|++||+|+.|+...
T Consensus 62 ~~l~~~v~G~V~~-------i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~i 134 (385)
T PRK09859 62 AEIRPQVGGIIIK-------RNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYV 134 (385)
T ss_pred EEEeccCcEEEEE-------EEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 4699999999988 7999999999999999997520
Q ss_pred ---------------------------------eeeeEecCCCeEEEEEEcCCCCccCCCC--eEEEE
Q 023188 252 ---------------------------------LMNEIEADQSGTIAEILAEDGKSVSVDT--PLLVI 284 (286)
Q Consensus 252 ---------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~--~L~~I 284 (286)
-...|+||++|+|.+.+++.|+.|..|+ +|+.|
T Consensus 135 s~~~~d~a~~~~~~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~V~~g~~~~l~~i 202 (385)
T PRK09859 135 SRQDYDTARTQLNEAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTV 202 (385)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCeECCCCCcceEEE
Confidence 1258999999999999999999999985 68876
No 66
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.63 E-value=0.00011 Score=52.05 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=30.7
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
..|.++.+|+|.++++++|+.|..|++|++|..
T Consensus 3 ~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~ 35 (50)
T PF13533_consen 3 VTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDS 35 (50)
T ss_pred EEEeCCCCEEEEEEEecCCCEEcCCCEEEEECc
Confidence 578999999999999999999999999999863
No 67
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=97.57 E-value=0.00013 Score=69.94 Aligned_cols=69 Identities=23% Similarity=0.390 Sum_probs=58.8
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC-------------------------------------
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK------------------------------------- 251 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK------------------------------------- 251 (286)
...|.+++.|.+.. ++|++||.|++||+|+.|+...
T Consensus 61 ~~~l~a~~~G~V~~-------v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~ 133 (370)
T PRK11578 61 KVDVGAQVSGQLKT-------LSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQ 133 (370)
T ss_pred EEEEecccceEEEE-------EEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999998 8999999999999999998621
Q ss_pred ------------------------------------------------eeeeEecCCCeEEEEEEcCCCCccCCC---Ce
Q 023188 252 ------------------------------------------------LMNEIEADQSGTIAEILAEDGKSVSVD---TP 280 (286)
Q Consensus 252 ------------------------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G---~~ 280 (286)
-...|+||++|+|.++.++.|+.|..| ++
T Consensus 134 ~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~V~~~~~~~~ 213 (370)
T PRK11578 134 RLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPN 213 (370)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcEeecccCCce
Confidence 013799999999999999999999766 46
Q ss_pred EEEE
Q 023188 281 LLVI 284 (286)
Q Consensus 281 L~~I 284 (286)
|+.|
T Consensus 214 l~~i 217 (370)
T PRK11578 214 ILTL 217 (370)
T ss_pred EEEE
Confidence 8876
No 68
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.51 E-value=0.00035 Score=66.12 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=57.0
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe---cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA---MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa---mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
...|+||..|.|+. +++.||.|++||+|+.|-. .....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 229 ~~~v~A~~~Gl~~~--------~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~v~~G~~l~~i 297 (298)
T cd06253 229 VVYVNAETSGIFVP--------AKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPLVYEGSLVARI 297 (298)
T ss_pred eEEEEcCCCeEEEE--------CcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCeecCCceEEEe
Confidence 45799999999986 7999999999999998865 3457899999999996655 66789999999987
No 69
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=97.50 E-value=9.4e-05 Score=52.35 Aligned_cols=36 Identities=28% Similarity=0.628 Sum_probs=32.3
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCee
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLM 253 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~ 253 (286)
.|.+|..|++.. ++|++||.|++||+|+.|+.....
T Consensus 4 ~I~~~~~G~V~~-------v~V~~G~~VkkGd~L~~ld~~~~~ 39 (50)
T PF13533_consen 4 TIQAPVSGRVES-------VYVKEGQQVKKGDVLLVLDSPDLQ 39 (50)
T ss_pred EEeCCCCEEEEE-------EEecCCCEEcCCCEEEEECcHHHH
Confidence 589999999999 899999999999999999876543
No 70
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=97.47 E-value=0.00011 Score=67.86 Aligned_cols=33 Identities=36% Similarity=0.601 Sum_probs=23.7
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam 250 (286)
..|.++..|++ . ++|++||.|++||+|+.|+..
T Consensus 22 ~~v~~~~~G~v-~-------~~v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 22 VSVSAPVSGRV-S-------VNVKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp EEE--SS-EEE-E-------E-S-TTSEEETT-EEEEEE-H
T ss_pred EEEECCCCEEE-E-------EEeCCcCEECCCCEEEEEECh
Confidence 46899999999 8 899999999999999999873
No 71
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=97.44 E-value=0.0002 Score=70.34 Aligned_cols=70 Identities=19% Similarity=0.316 Sum_probs=59.4
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC------------------------------------
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK------------------------------------ 251 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK------------------------------------ 251 (286)
....|.+++.|++.. .++++||.|++||+|+.|....
T Consensus 86 ~~v~v~~~vsG~V~~-------i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g 158 (415)
T PRK11556 86 NTVTVRSRVDGQLMA-------LHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTN 158 (415)
T ss_pred eEEEEEccccEEEEE-------EECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445789999999988 7999999999999999996521
Q ss_pred -----------------------------------eeeeEecCCCeEEEEEEcCCCCccCCCC--eEEEE
Q 023188 252 -----------------------------------LMNEIEADQSGTIAEILAEDGKSVSVDT--PLLVI 284 (286)
Q Consensus 252 -----------------------------------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~--~L~~I 284 (286)
-...|+||++|+|..+.++.|+.|..|+ +|+.|
T Consensus 159 ~is~~~ld~~~~~~~~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~V~~g~~~~l~~i 228 (415)
T PRK11556 159 LVSRQELDAQQALVSETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQISSGDTTGIVVI 228 (415)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCceecCCCCceeEEE
Confidence 1348999999999999999999999984 67765
No 72
>PRK12784 hypothetical protein; Provisional
Probab=97.41 E-value=0.00067 Score=53.01 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=63.4
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC-eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK-LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK-~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.|.||.-|++-+ .||.+++.|-+.+.|+.|++|. .+..|.-..+|-|.-+.++.||.|..++.|+.++
T Consensus 7 ~iyS~~~G~Vek-------ifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~e 75 (84)
T PRK12784 7 EICSSYEGKVEE-------IFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLE 75 (84)
T ss_pred hhcCccccEEEE-------EEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEe
Confidence 589999999999 8999999999999999999975 4567899999999999999999999999999986
No 73
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.38 E-value=0.00058 Score=64.97 Aligned_cols=66 Identities=29% Similarity=0.277 Sum_probs=55.7
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec----CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM----KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam----K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+||..|.|+. +++.||.|++||+|+.|-.. ....+|+||.+|+|.... ..-.|..|+.|+.|.
T Consensus 245 ~~v~A~~~G~~~~--------~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~v~~G~~l~~i~ 314 (316)
T cd06252 245 CYVFAPHPGLFEP--------LVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGLVRRGDCLAVLA 314 (316)
T ss_pred EEEEcCCCeEEEE--------ecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCccCCCCEEEEEe
Confidence 5799999999985 89999999999999998663 456789999999996544 446699999999874
No 74
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=97.33 E-value=0.00084 Score=63.02 Aligned_cols=65 Identities=28% Similarity=0.356 Sum_probs=54.7
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec--CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM--KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam--K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
..|+||..|.|+. .++.||.|++||+|+.|-.. ....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 220 ~~v~A~~~G~~~~--------~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~v~~G~~l~~i 286 (287)
T cd06251 220 VWVRAPQGGLLRS--------LVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPLVNEGDALFHI 286 (287)
T ss_pred eEEecCCCeEEEE--------ecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCccCCCCEEEEe
Confidence 4799999999985 89999999999999999652 234799999999995544 66689999999987
No 75
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=97.25 E-value=0.00068 Score=63.67 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=30.7
Q ss_pred CCccCCcc---eEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188 210 PPLKCPMA---GTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 210 ~~I~AP~~---G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam 250 (286)
..|.++.. |++.+ ++|++||.|++||+|+.|+..
T Consensus 14 ~~v~~~~~~~~G~V~~-------i~V~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 14 VAVAAPSSGGTDRIKK-------LLVAEGDRVQAGQVLAELDSR 50 (327)
T ss_pred EEecCCCCCCCcEEEE-------EEccCCCEecCCcEEEEecCc
Confidence 46889999 99999 899999999999999999863
No 76
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=97.22 E-value=0.0011 Score=63.64 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=55.8
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec----CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM----KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam----K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
..|+||..|.|+. +++.||.|++||+|+.|-.. ....+|+||.+|+|..+. ..-.|..|+.|+.|
T Consensus 256 ~~v~Ap~~Gi~~~--------~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~V~~Gd~l~~i 324 (325)
T TIGR02994 256 CFIFAEDDGLIEF--------MIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGLIKSGDCIAVL 324 (325)
T ss_pred eEEEcCCCeEEEE--------ecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCccCCCCEEEEe
Confidence 4799999999985 89999999999999988653 356799999999997755 66789999999876
No 77
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=97.12 E-value=0.0014 Score=63.74 Aligned_cols=67 Identities=24% Similarity=0.170 Sum_probs=54.3
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec----CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEE
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM----KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLV 283 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam----K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~ 283 (286)
+...|+||..|.|+. +++.||.|++||+|+.|-.- ....+|+||.+|+|..+. ..-.|..|+.|+.
T Consensus 288 ~~~~v~Ap~~Gl~~~--------~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~--~~~~V~~G~~l~~ 357 (359)
T cd06250 288 GVEMLYAPAGGMVVY--------RAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARA--SRRFVRAGDELAK 357 (359)
T ss_pred CcEEEeCCCCeEEEE--------ecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEec--CCccccCCCeEEE
Confidence 345799999999985 89999999999999988542 122336999999996555 7778999999998
Q ss_pred E
Q 023188 284 I 284 (286)
Q Consensus 284 I 284 (286)
|
T Consensus 358 I 358 (359)
T cd06250 358 I 358 (359)
T ss_pred e
Confidence 7
No 78
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=97.07 E-value=0.00083 Score=50.31 Aligned_cols=33 Identities=12% Similarity=0.430 Sum_probs=30.5
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.-.|+||.+|+|.++++++||.|+.||+|+.++
T Consensus 2 ~~~v~a~~~G~i~~~~v~~Gd~V~~g~~l~~ve 34 (71)
T PRK05889 2 AEDVRAEIVASVLEVVVNEGDQIGKGDTLVLLE 34 (71)
T ss_pred CcEEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 346999999999999999999999999999875
No 79
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=97.01 E-value=0.0015 Score=54.49 Aligned_cols=39 Identities=33% Similarity=0.508 Sum_probs=32.5
Q ss_pred cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA 269 (286)
Q Consensus 231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv 269 (286)
+-++|+.|++|+.++.||+.|...++.+|.+|+|+++.-
T Consensus 38 lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~ 76 (122)
T PF01597_consen 38 LPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNE 76 (122)
T ss_dssp -B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-G
T ss_pred EccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcc
Confidence 568899999999999999999999999999999999864
No 80
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.94 E-value=0.0022 Score=61.39 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=29.8
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa 249 (286)
..|.++..|++.+ ++|++||.|++||+|+.++.
T Consensus 44 ~~v~~~~~G~v~~-------i~V~eG~~V~kG~~L~~ld~ 76 (423)
T TIGR01843 44 KVVQHLEGGIVRE-------ILVREGDRVKAGQVLVELDA 76 (423)
T ss_pred eecccCCCcEEEE-------EEeCCCCEecCCCeEEEEcc
Confidence 4588999999999 89999999999999999854
No 81
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.88 E-value=0.0013 Score=55.98 Aligned_cols=40 Identities=25% Similarity=0.501 Sum_probs=37.1
Q ss_pred cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcC
Q 023188 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAE 270 (286)
Q Consensus 231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve 270 (286)
+-++|+.|++|+.++.||+-|...+|.||.+|+|+++.-+
T Consensus 46 lpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~ 85 (131)
T COG0509 46 LPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEA 85 (131)
T ss_pred cCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechh
Confidence 5689999999999999999999999999999999998643
No 82
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=96.85 E-value=0.0028 Score=51.45 Aligned_cols=39 Identities=46% Similarity=0.585 Sum_probs=34.9
Q ss_pred ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA 269 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv 269 (286)
+.|++||+|++||.|+..+. -+...|.|+++|+|+.|.-
T Consensus 44 p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~ 82 (101)
T PF13375_consen 44 PVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEK 82 (101)
T ss_pred EEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEee
Confidence 88999999999999999875 5578999999999998763
No 83
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=96.85 E-value=0.0029 Score=59.40 Aligned_cols=65 Identities=28% Similarity=0.398 Sum_probs=52.1
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe--cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA--MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 282 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa--mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~ 282 (286)
....++||..|.|+. +++.||.|++||+|+.|-. .....+|+||++|+|.-+. ..-.|..|+.|+
T Consensus 222 ~~~~v~Ap~~G~~~~--------~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~~v~~G~~l~ 288 (288)
T cd06254 222 DVYYVTSPASGLWYP--------FVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATLPVRKGDPLA 288 (288)
T ss_pred CCEEEecCCCeEEEE--------ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCCccCCCCccC
Confidence 335799999999985 8999999999999999843 3457799999999997665 445677777763
No 84
>PRK06748 hypothetical protein; Validated
Probab=96.66 E-value=0.0035 Score=49.41 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=31.4
Q ss_pred eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 252 LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 252 ~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.+.-|+||..|+|.++++++||.|..|++|+.|+
T Consensus 3 ~~~~v~sp~~G~I~~w~vk~GD~V~~gd~l~~IE 36 (83)
T PRK06748 3 VIEGVYSPCYGKVEKLFVRESSYVYEWEKLALIE 36 (83)
T ss_pred EeeEEecCCcEEEEEEEeCCCCEECCCCEEEEEE
Confidence 3557999999999999999999999999999986
No 85
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=96.61 E-value=0.0033 Score=46.70 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=30.8
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
|..|.|+..|+|.+++++.|+.|+.|++|+.++
T Consensus 1 ~~~i~a~~~G~i~~~~v~~G~~V~~g~~l~~ve 33 (70)
T PRK08225 1 MTKVYASMAGNVWKIVVKVGDTVEEGQDVVILE 33 (70)
T ss_pred CCeEeCCCCEEEEEEEeCCCCEECCCCEEEEEE
Confidence 457999999999999999999999999999886
No 86
>COG3608 Predicted deacylase [General function prediction only]
Probab=96.51 E-value=0.0066 Score=58.84 Aligned_cols=66 Identities=29% Similarity=0.334 Sum_probs=52.2
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec---CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM---KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam---K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
...|+||-.|.|.- .|+.||.|++||+|+.|-.+ +...||+|+++|+|.... ---.|..|+.++.+
T Consensus 256 ~~~i~Ap~~G~v~~--------~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r--~~~~v~~Gdl~~~v 324 (331)
T COG3608 256 DEMIRAPAGGLVEF--------LVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR--SLRLVQPGDLLKVV 324 (331)
T ss_pred cceeecCCCceEEE--------eecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe--eccccCCCCeeeee
Confidence 34699999999874 89999999999999999775 677899999999997765 22345555555543
No 87
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=96.35 E-value=0.0049 Score=43.93 Aligned_cols=31 Identities=32% Similarity=0.624 Sum_probs=28.9
Q ss_pred eEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 255 EIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 255 eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.|+|+++|+|.+++++.|+.|+.|++|+.|+
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~v~~g~~l~~i~ 31 (67)
T cd06850 1 EVTAPMPGTVVKVLVKEGDKVEAGQPLAVLE 31 (67)
T ss_pred CccCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence 3789999999999999999999999999886
No 88
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=95.79 E-value=0.012 Score=50.16 Aligned_cols=34 Identities=21% Similarity=0.271 Sum_probs=31.7
Q ss_pred eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 252 LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 252 ~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
....|+||..|++.+++|+.||.|..||.|+.||
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd~V~~Gq~l~IiE 102 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGDTVKAGQTLAIIE 102 (140)
T ss_pred cCceEecCcceEEEEEeeccCCEEcCCCEEEEEE
Confidence 4568999999999999999999999999999986
No 89
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.77 E-value=0.026 Score=53.32 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=43.2
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec--CeeeeEecCCCeEEEEE
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM--KLMNEIEADQSGTIAEI 267 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam--K~~~eI~Ap~sGvV~~I 267 (286)
...|+||..|.|+. .++.||.|++||.|+.|-.. ....+++||.+|+|..+
T Consensus 231 ~~~v~Ap~~Gi~~~--------~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 231 RDWVAAIHGGLFEP--------SVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred eEEEecCCCeEEEE--------ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 45799999999985 79999999999999998552 33567999999999776
No 90
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.66 E-value=0.017 Score=49.09 Aligned_cols=33 Identities=27% Similarity=0.534 Sum_probs=30.6
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
...|.|+.+|+|.++++++||.|+.|++|+.|+
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd~V~~Gq~L~~lE 93 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGDQVTENQPLLILE 93 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCCEECCCCEEEEEe
Confidence 356899999999999999999999999999986
No 91
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=95.61 E-value=0.021 Score=54.43 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=39.3
Q ss_pred cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 233 kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
..+..+...+ +.|++. ...|.++.+|+|.++++++|+.|..|++|++|.+
T Consensus 32 ~~~~~~~t~~--~~v~~~--~v~v~~~v~G~V~~v~V~~G~~VkkGq~L~~ld~ 81 (346)
T PRK10476 32 RTDSAPSTDD--AYIDAD--VVHVASEVGGRIVELAVTENQAVKKGDLLFRIDP 81 (346)
T ss_pred ccCceEecCC--eEEEee--eEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 3344433333 456653 6889999999999999999999999999999874
No 92
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=95.50 E-value=0.017 Score=43.59 Aligned_cols=32 Identities=38% Similarity=0.508 Sum_probs=27.6
Q ss_pred eeEecCCCeEEEE------EEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAE------ILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~------Ilve~Gd~V~~G~~L~~Ie 285 (286)
++|++|.-|.+.+ +++++|+.|..||+|+.|+
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~ie 38 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIE 38 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEE
Confidence 3678888877555 9999999999999999986
No 93
>PRK07051 hypothetical protein; Validated
Probab=95.38 E-value=0.017 Score=44.31 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=29.7
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEE
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIE 248 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IE 248 (286)
..|+||..|++.+ +++++||.|+.||+|+.|+
T Consensus 48 ~~i~a~~~G~v~~-------i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 48 TEVEAEAAGRVVE-------FLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred EEEeCCCCEEEEE-------EEcCCcCEECCCCEEEEEe
Confidence 4699999999999 8999999999999999985
No 94
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=95.32 E-value=0.046 Score=50.52 Aligned_cols=65 Identities=28% Similarity=0.355 Sum_probs=53.4
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeE--EEEEec--CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVV--CIIEAM--KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L--~~IEam--K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
..++||..|.|+. .++.||.|++||+| +.+-.. ....+|+++.+|+|. .....-.|..|+.|+.|
T Consensus 221 ~~~~a~~~G~~~~--------~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii--~~~~~~~v~~G~~l~~v 289 (292)
T PF04952_consen 221 EWVRAPAGGLFEP--------EVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIII--FIRESPYVEQGDALAKV 289 (292)
T ss_dssp CEEESSSSEEEEE--------TSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEE--SECTSSECTTTEEEEEE
T ss_pred eeecCCccEEEEE--------eecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEE--EeCcccccCCCCeEEEE
Confidence 4689999999985 89999999999999 655432 344689999999994 44588899999999986
No 95
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=95.27 E-value=0.024 Score=53.12 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=32.2
Q ss_pred eeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 252 LMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 252 ~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
-...|.++.+|+|.++++++|+.|..||+|++|.+
T Consensus 41 ~~~~v~a~~~G~V~~i~v~~G~~V~kGq~L~~ld~ 75 (334)
T TIGR00998 41 NQLQVSSQVSGSVIEVNVDDTDYVKQGDVLVRLDP 75 (334)
T ss_pred ceEEEcccCceEEEEEEeCCCCEEcCCCEEEEECc
Confidence 36789999999999999999999999999999864
No 96
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=95.15 E-value=0.039 Score=54.83 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=35.5
Q ss_pred EEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 246 IIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 246 ~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
.|....-...|.+...|+|.+|+|++||.|..|++|++|.+
T Consensus 52 ~v~p~~~~~~vq~~~~G~v~~i~V~eG~~V~~G~~L~~ld~ 92 (457)
T TIGR01000 52 TIEPAKILSKIQSTSNNAIKENYLKENKFVKKGDLLVVYDN 92 (457)
T ss_pred EEEecCceEEEEcCCCcEEEEEEcCCCCEecCCCEEEEECc
Confidence 45545556789999999999999999999999999999864
No 97
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=95.13 E-value=0.029 Score=48.77 Aligned_cols=32 Identities=34% Similarity=0.551 Sum_probs=30.1
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|.|+..|+|.++++++||.|+.||.|+.|+
T Consensus 85 ~~v~ap~~G~I~~~~V~~Gd~V~~Gq~l~~iE 116 (153)
T PRK05641 85 NVVTAPMPGKILRILVREGQQVKVGQGLLILE 116 (153)
T ss_pred CEEECCCCeEEEEEEeCCCCEEcCCCEEEEEe
Confidence 56899999999999999999999999999885
No 98
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=94.99 E-value=0.043 Score=54.09 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=42.6
Q ss_pred ccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 232 VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
++.|+.-..-+..+.|++. -...|.++.+|+|.+|++++|+.|..||+|++|.+
T Consensus 67 v~~~~~~~~i~~~Gtv~a~-~~v~v~~~vsG~V~~i~v~eG~~VkkGq~La~ld~ 120 (415)
T PRK11556 67 ATEQAVPRYLTGLGTVTAA-NTVTVRSRVDGQLMALHFQEGQQVKAGDLLAEIDP 120 (415)
T ss_pred EEEeccceEEEEEEEEEee-eEEEEEccccEEEEEEECCCCCEecCCCEEEEECc
Confidence 3444443344456777774 45779999999999999999999999999999864
No 99
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=94.96 E-value=0.041 Score=53.34 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=42.4
Q ss_pred ccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 232 VKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 232 VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
++.|+....-+..+.|+... ...|.+.++|+|.++++++|+.|..||+|++|.+
T Consensus 41 v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~~VkkGqvLa~ld~ 94 (385)
T PRK09859 41 LSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDP 94 (385)
T ss_pred eEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcCEecCCCEEEEECc
Confidence 34444444444566777654 5679999999999999999999999999999974
No 100
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=94.95 E-value=0.051 Score=52.24 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=35.7
Q ss_pred eEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 243 VVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 243 ~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
.-+.|+... ...|.++.+|.|.++++++|+.|..|++|+.|.+
T Consensus 52 ~~G~v~~~~-~~~l~a~~~G~V~~v~v~~G~~V~kG~~L~~ld~ 94 (370)
T PRK11578 52 ATGKLDALR-KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDP 94 (370)
T ss_pred EEEEEEeee-EEEEecccceEEEEEEcCCCCEEcCCCEEEEECc
Confidence 344555543 4489999999999999999999999999999864
No 101
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=94.92 E-value=0.036 Score=54.22 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=32.3
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
...|.++++|+|.+++|++|+.|..||+|++|.+
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd~VkkGqvL~~LD~ 94 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDP 94 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCCEECCCCEEEEECc
Confidence 7789999999999999999999999999999974
No 102
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=94.91 E-value=0.043 Score=53.08 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=40.8
Q ss_pred cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 233 KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 233 kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
+.|+.-..-...+.|++. -...|.+..+|+|.+++++.||.|..||+|+.|.+
T Consensus 44 ~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd~VkkGq~La~ld~ 96 (385)
T PRK09578 44 RPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQEVKQGAVLFRIDP 96 (385)
T ss_pred EEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCCEEcCCCEEEEECC
Confidence 333333333445677765 35689999999999999999999999999999864
No 103
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.90 E-value=0.044 Score=52.50 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=41.8
Q ss_pred ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+|.+.-..|.. -+.|....-...|.++.+|+|++++|++||.|..|++|+.++
T Consensus 23 ~~~~~~~~v~~---~G~v~~~~~~~~v~~~~~G~v~~i~V~eG~~V~kG~~L~~ld 75 (423)
T TIGR01843 23 YFAPLDVVATA---TGKVVPSGNVKVVQHLEGGIVREILVREGDRVKAGQVLVELD 75 (423)
T ss_pred hheeccceEEe---eeEEEECCCeeecccCCCcEEEEEEeCCCCEecCCCeEEEEc
Confidence 34444444443 235667777888999999999999999999999999999986
No 104
>PF13437 HlyD_3: HlyD family secretion protein
Probab=94.88 E-value=0.03 Score=43.88 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=29.9
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam 250 (286)
.|+||+.|++.. +.++.|+.|..|+.|+.|..+
T Consensus 1 ~i~AP~~G~V~~-------~~~~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 1 TIRAPFDGVVVS-------INVQPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred CEECCCCEEEEE-------EeCCCCCEECCCCEEEEEEcc
Confidence 489999999998 789999999999999998764
No 105
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=94.81 E-value=0.063 Score=47.49 Aligned_cols=65 Identities=28% Similarity=0.421 Sum_probs=43.6
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEec----CCeEEEEEecCeeeeEecCCCeEEEE-------------------
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAE------------------- 266 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~----Gq~L~~IEamK~~~eI~Ap~sGvV~~------------------- 266 (286)
..|.||+.|++.. +-++-|.|=. ||-+++.-+ ...|.||++|+|+.
T Consensus 21 ~~i~aP~~G~vi~--------L~~V~D~vFs~k~mGdGvAI~P~---~~~v~AP~dG~V~~vf~T~HAigi~t~~G~eiL 89 (169)
T PRK09439 21 IEIIAPLSGEIVN--------IEDVPDVVFAEKIVGDGIAIKPT---GNKMVAPVDGTIGKIFETNHAFSIESDSGVELF 89 (169)
T ss_pred eEEEecCCeEEEE--------hHHCCChHhcccCccceEEEEcc---CCEEEecCCeEEEEEcCCCCEEEEEeCCCcEEE
Confidence 3578888888875 4455554444 566665443 25666777776654
Q ss_pred ----------------EEcCCCCccCCCCeEEEEc
Q 023188 267 ----------------ILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 267 ----------------Ilve~Gd~V~~G~~L~~Ie 285 (286)
++++.||.|..||+|+++.
T Consensus 90 IHiGiDTV~L~G~gF~~~Vk~Gd~Vk~G~~L~~~D 124 (169)
T PRK09439 90 VHFGIDTVELKGEGFKRIAEEGQRVKVGDPIIEFD 124 (169)
T ss_pred EEEeecccccCCCceEEEecCCCEEeCCCEEEEEc
Confidence 4578899999999999864
No 106
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=94.66 E-value=0.065 Score=50.69 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=31.7
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
...|.++.+|+|+++++++||.|+.|++|++|.+
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd~V~kG~~L~~ld~ 76 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGDAVKAGQVLGELDA 76 (331)
T ss_pred EEEeecccCcEEEEEEcCCCCEEcCCCEEEEECh
Confidence 5689999999999999999999999999999863
No 107
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=94.53 E-value=0.066 Score=52.49 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=33.0
Q ss_pred cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 250 MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 250 mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
..-...|.++.+|+|.+++|++|+.|..|++|++|.+
T Consensus 55 ~~~~~~v~a~~~G~V~~i~V~eG~~V~kGq~L~~l~~ 91 (421)
T TIGR03794 55 SSGVDTIQSPGSGVVIDLDVEVGDQVKKGQVVARLFQ 91 (421)
T ss_pred CCceeEEECCCCeEEEEEECCCcCEECCCCEEEEECc
Confidence 3445689999999999999999999999999999863
No 108
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=94.40 E-value=0.052 Score=53.09 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=31.7
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
...|.+.++|.|++++|++++.|..|++||+|.|
T Consensus 53 vv~Iap~VsG~V~eV~V~dnq~Vk~Gd~L~~iD~ 86 (352)
T COG1566 53 VVPIAPQVSGRVTEVNVKDNQLVKKGDVLFRIDP 86 (352)
T ss_pred EEEEcCcCceEEEEEEecCCCEecCCCeEEEECc
Confidence 4578899999999999999999999999999986
No 109
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=94.36 E-value=0.049 Score=54.84 Aligned_cols=39 Identities=26% Similarity=0.217 Sum_probs=34.0
Q ss_pred ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA 269 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv 269 (286)
+.|++||+|++||.|+.-+.. ....|.|+++|+|++|..
T Consensus 43 ~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 43 MKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred eEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 789999999999999986543 578999999999999954
No 110
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=94.32 E-value=0.079 Score=51.70 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=35.5
Q ss_pred EEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 245 CIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 245 ~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
+.|++ .-...|.+..+|+|.+++++.||.|..||+|++|++
T Consensus 58 G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd~VkkGqvLa~ld~ 98 (397)
T PRK15030 58 GRTSA-YRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDP 98 (397)
T ss_pred EEEEE-EEEEEEEecCcEEEEEEEcCCCCEecCCCEEEEECC
Confidence 45555 336789999999999999999999999999999974
No 111
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=94.19 E-value=0.16 Score=42.82 Aligned_cols=20 Identities=25% Similarity=0.272 Sum_probs=16.4
Q ss_pred EEEcCCCCccCCCCeEEEEc
Q 023188 266 EILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 266 ~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+++++.||.|..|++|+++.
T Consensus 83 ~~~vk~Gd~V~~G~~l~~~D 102 (124)
T cd00210 83 TSHVEEGQRVKQGDKLLEFD 102 (124)
T ss_pred EEEecCCCEEcCCCEEEEEc
Confidence 45678999999999999864
No 112
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=94.06 E-value=0.073 Score=50.49 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=31.0
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
..|.++.+|+|.++++++||.|..||+|++|++
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd~VkkGqvLa~Ld~ 80 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQLVKKGQVLFTIDQ 80 (310)
T ss_pred EEEccCCceEEEEEEeCCcCEEcCCCEEEEECc
Confidence 569999999999999999999999999999874
No 113
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=94.01 E-value=0.083 Score=46.03 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=30.4
Q ss_pred ccccCCCEEecCCeEEEEEecCee-eeEecCCCeEEEEEEc
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMKLM-NEIEADQSGTIAEILA 269 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK~~-~eI~Ap~sGvV~~Ilv 269 (286)
+.+.+||.|.+||.|+.|.|.|-. .-|+||++|+|.-+.-
T Consensus 94 ~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e 134 (150)
T PF09891_consen 94 PIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIE 134 (150)
T ss_dssp ESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEE
T ss_pred EEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEe
Confidence 689999999999999999999976 5799999999987763
No 114
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=93.81 E-value=0.13 Score=51.69 Aligned_cols=39 Identities=33% Similarity=0.285 Sum_probs=33.4
Q ss_pred ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEc
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILA 269 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilv 269 (286)
..|++||+|++||.|+.-... ....+.|+++|+|++|..
T Consensus 44 ~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~ 82 (448)
T PRK05352 44 MKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR 82 (448)
T ss_pred eEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence 789999999999999965433 468999999999999953
No 115
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=93.58 E-value=0.22 Score=41.84 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=17.4
Q ss_pred EEEEcCCCCccCCCCeEEEEc
Q 023188 265 AEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 265 ~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
-+++++.||.|..||+|+++.
T Consensus 82 F~~~v~~Gd~V~~G~~l~~~D 102 (121)
T TIGR00830 82 FTSHVEEGQRVKKGDPLLEFD 102 (121)
T ss_pred eEEEecCCCEEcCCCEEEEEc
Confidence 356688999999999999864
No 116
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=93.35 E-value=0.052 Score=49.53 Aligned_cols=32 Identities=28% Similarity=0.499 Sum_probs=22.4
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa 249 (286)
.|.++..|++.. .+|++||.|++||+|+.|+.
T Consensus 3 ~Vq~~~~G~V~~-------i~V~eG~~VkkGq~L~~LD~ 34 (305)
T PF00529_consen 3 IVQSLVGGIVTE-------ILVKEGQRVKKGQVLARLDP 34 (305)
T ss_dssp EE--SS-EEEEE-------E-S-TTEEE-TTSECEEE--
T ss_pred EEeCCCCeEEEE-------EEccCcCEEeCCCEEEEEEe
Confidence 478889999999 89999999999999999975
No 117
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=93.34 E-value=0.083 Score=52.64 Aligned_cols=39 Identities=41% Similarity=0.479 Sum_probs=34.1
Q ss_pred CccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEE
Q 023188 229 PAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL 268 (286)
Q Consensus 229 ~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Il 268 (286)
.+.|++||+|+.||.|+..+ ......|.|+++|+|++|.
T Consensus 44 ~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 44 EPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred ceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 37899999999999999873 3357899999999999985
No 118
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=93.29 E-value=0.13 Score=48.36 Aligned_cols=38 Identities=32% Similarity=0.329 Sum_probs=31.9
Q ss_pred ccccCCCEEecCCeEEEEEecCe--eeeEecCCCeEEEEEEcC
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMKL--MNEIEADQSGTIAEILAE 270 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK~--~~eI~Ap~sGvV~~Ilve 270 (286)
..|++||+|++||+|++ +|- ..-..||++|+|++|..-
T Consensus 43 m~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~RG 82 (257)
T PF05896_consen 43 MLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINRG 82 (257)
T ss_pred EEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEecC
Confidence 68999999999999997 443 356789999999998863
No 119
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=93.11 E-value=0.11 Score=57.67 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=55.9
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+...+...+.|..+. ..|+.|+.+..++.....+. .-...|.|+..|+|.+++++.||.|..|++|+.|+
T Consensus 1037 g~r~v~fElNGq~re-------V~V~D~s~~~~~~~~~KAd~-~~~~~I~a~~~G~v~~~~v~~Gd~V~~Gd~L~~iE 1106 (1143)
T TIGR01235 1037 GEREVFFELNGQPRR-------IKVPDRSHKAEAAVRRKADP-GNPAHVGAPMPGVIIEVKVSSGQAVNKGDPLVVLE 1106 (1143)
T ss_pred CcEEEEEEECCeEEE-------EEecCccccccccccccccc-ccCceeecCCCcEEEEEEeCCCCEeCCCCEEEEEE
Confidence 334677788888877 67888888877776554432 22357999999999999999999999999999986
No 120
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=92.77 E-value=0.25 Score=44.93 Aligned_cols=44 Identities=30% Similarity=0.352 Sum_probs=35.5
Q ss_pred CeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 242 QVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 242 q~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
...+.++. .....|.+...|+|.+|++++||.|..|++|+.+++
T Consensus 56 ~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 56 RAPGRVEA-TRSVEVLARVAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eeeeEEEe-eeeeeEecccccEEEEEEccCCCeecCCCEEEEECC
Confidence 34445555 333478888999999999999999999999999863
No 121
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=92.51 E-value=0.27 Score=41.78 Aligned_cols=65 Identities=28% Similarity=0.424 Sum_probs=42.2
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEE----ecCCeEEEEEecCeeeeEecCCCeEEEEE------------------
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKV----QKGQVVCIIEAMKLMNEIEADQSGTIAEI------------------ 267 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V----~~Gq~L~~IEamK~~~eI~Ap~sGvV~~I------------------ 267 (286)
..|.||+.|++.. +-++-|.| --|+-+++.=.. ..|.||++|+|..+
T Consensus 3 ~~i~aPv~G~vi~--------l~~v~D~vFs~~~lG~GvaI~p~~---~~v~AP~~G~v~~i~~T~HAi~i~s~~G~eiL 71 (132)
T PF00358_consen 3 ITIYAPVSGKVIP--------LEEVPDPVFSQKMLGDGVAIIPSD---GKVYAPVDGTVTMIFPTKHAIGIRSDNGVEIL 71 (132)
T ss_dssp EEEE-SSSEEEEE--------GGGSSSHHHHTTSSSEEEEEEESS---SEEEESSSEEEEEE-TTSSEEEEEETTSEEEE
T ss_pred eEEEeeCCcEEEE--------hhhCCchHHCCCCCcCEEEEEcCC---CeEEEEeeEEEEEEcCCCCEEEEEeCCCCEEE
Confidence 3688999999987 33444444 236777766443 36788888877753
Q ss_pred -----------------EcCCCCccCCCCeEEEEc
Q 023188 268 -----------------LAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 268 -----------------lve~Gd~V~~G~~L~~Ie 285 (286)
+++.||.|..||+|+++.
T Consensus 72 iHiGidTv~L~G~gF~~~v~~G~~V~~G~~L~~~D 106 (132)
T PF00358_consen 72 IHIGIDTVKLNGEGFETLVKEGDKVKAGQPLIEFD 106 (132)
T ss_dssp EE-SBSGGGGTTTTEEESS-TTSEE-TTEEEEEE-
T ss_pred EEEccchhhcCCcceEEEEeCCCEEECCCEEEEEc
Confidence 455677788888888763
No 122
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=92.00 E-value=0.15 Score=52.14 Aligned_cols=42 Identities=40% Similarity=0.457 Sum_probs=36.7
Q ss_pred ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEE---cCCCC
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL---AEDGK 273 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Il---ve~Gd 273 (286)
++|++||+|.+||.|..=+. .+..+.||.+|+|++|. +.++.
T Consensus 47 ~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~~~~~~~~s 91 (529)
T COG4656 47 LLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIEPANFPHPS 91 (529)
T ss_pred eEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeeeecccCCcc
Confidence 78999999999999987665 89999999999999998 55544
No 123
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=91.99 E-value=0.27 Score=48.44 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=36.0
Q ss_pred eEEEEEecC-eeeeEecCCCeEEEEEE-cCCCCccCCCCeEEEEc
Q 023188 243 VVCIIEAMK-LMNEIEADQSGTIAEIL-AEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 243 ~L~~IEamK-~~~eI~Ap~sGvV~~Il-ve~Gd~V~~G~~L~~Ie 285 (286)
..+.|+.+. -...|.+.++|.|.+++ +..||.|..||+|++|.
T Consensus 112 ~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd~VkkGq~La~l~ 156 (409)
T PRK09783 112 FPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLT 156 (409)
T ss_pred EeEEEEECCCceEEEeCCcCEEEEEEEecCCCCEECCCCEEEEEe
Confidence 346666543 34589999999999998 99999999999999986
No 124
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=91.87 E-value=0.47 Score=42.04 Aligned_cols=55 Identities=15% Similarity=0.280 Sum_probs=33.1
Q ss_pred ccccCCCEEecCCeEEEEEecC-------eeeeEecCCCeEEEEEEcCCCCccCCCCe-EEEEc
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMK-------LMNEIEADQSGTIAEILAEDGKSVSVDTP-LLVIV 285 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK-------~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~-L~~Ie 285 (286)
++|++||+|++||.|+.+.-.. ....|.-.-...+..+....| .|..|+. |+.|+
T Consensus 106 ~~Vk~Gd~Vk~G~~L~~~D~~~i~~~g~~~~~~vvitn~~~~~~~~~~~~-~v~~g~~~~~~i~ 168 (169)
T PRK09439 106 RIAEEGQRVKVGDPIIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSG-SVTAGETPVIRVK 168 (169)
T ss_pred EEecCCCEEeCCCEEEEEcHHHHHhcCCCCeEEEEEeccccccceecccC-ceecCCeEEEEEe
Confidence 7899999999999999886532 233333333333333444445 4666664 55553
No 125
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=91.78 E-value=0.23 Score=44.74 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=29.4
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+||.+|+|..+.+..|+.|..|++|+.|.
T Consensus 89 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 89 VEVRSPFDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEEECCCCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 36899999999999999999999999999874
No 126
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=91.62 E-value=0.13 Score=45.52 Aligned_cols=45 Identities=31% Similarity=0.455 Sum_probs=39.2
Q ss_pred CCccc---cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCC
Q 023188 228 EPAFV---KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDG 272 (286)
Q Consensus 228 ~~~~V---kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~G 272 (286)
.-||| ++|..|.+||.++.+|.-|...+|.+|++|+|++|.-+=.
T Consensus 81 dvv~veLPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~ 128 (172)
T KOG3373|consen 81 DVVYVELPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLE 128 (172)
T ss_pred ceEEEEcCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccc
Confidence 33555 7899999999999999999999999999999999975433
No 127
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=91.54 E-value=0.21 Score=52.88 Aligned_cols=38 Identities=37% Similarity=0.441 Sum_probs=32.6
Q ss_pred ccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEE
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEIL 268 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Il 268 (286)
+.|++||+|.+||.|+.-+ .-....|.||.+|+|+.|.
T Consensus 51 ~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 51 LCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred ceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 7899999999999999653 2256899999999999985
No 128
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=91.51 E-value=0.41 Score=49.94 Aligned_cols=75 Identities=21% Similarity=0.330 Sum_probs=49.9
Q ss_pred CCccCCcceEEEccCCCC----------C------------------CccccCCCEEecCCeEEEEEecC-------eee
Q 023188 210 PPLKCPMAGTFYRCPAPG----------E------------------PAFVKVGDKVQKGQVVCIIEAMK-------LMN 254 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~----------~------------------~~~VkvGd~V~~Gq~L~~IEamK-------~~~ 254 (286)
..|.||..|++....+-. . ..+|++||+|++||.|+.+.-.. ...
T Consensus 500 ~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d~~~i~~~~~~~~~ 579 (610)
T TIGR01995 500 GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFDLDKIKEAGYDPTT 579 (610)
T ss_pred CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCCeEEEecCcCEEcCCCEEEEecHHHHHhcCCCCee
Confidence 579999999877543211 1 17899999999999999886542 233
Q ss_pred eEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 255 EIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 255 eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
.|.-.-......+....+..|..|+.++.+
T Consensus 580 ~vvv~n~~~~~~~~~~~~~~~~~~~~~~~~ 609 (610)
T TIGR01995 580 PVVVTNTKDFLDVIPTDKETVTAGDVLLRL 609 (610)
T ss_pred EEEEEccccccceeeccCCcccCCCeeEEe
Confidence 333333333344555566679999988875
No 129
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=91.33 E-value=0.17 Score=43.99 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=30.2
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEE
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIE 248 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IE 248 (286)
...|+|+..|++.+ ++++.||.|..||.|+.|+
T Consensus 124 ~~eI~A~~~G~v~~-------i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 124 MNEIEAEVAGKVVE-------ILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred ceEEecCCCcEEEE-------EEeCCCCEECCCCEEEEEC
Confidence 34699999999999 8999999999999999985
No 130
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=91.03 E-value=0.46 Score=41.70 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=16.8
Q ss_pred EEEcCCCCccCCCCeEEEEc
Q 023188 266 EILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 266 ~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+.++++||.|..||+|+++.
T Consensus 90 ~~~v~~Gd~Vk~Gd~Li~fD 109 (156)
T COG2190 90 ESLVKEGDKVKAGDPLLEFD 109 (156)
T ss_pred EEEeeCCCEEccCCEEEEEC
Confidence 45788999999999999863
No 131
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=90.97 E-value=0.2 Score=43.44 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=30.3
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEE
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIE 248 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IE 248 (286)
...|+||..|++.+ ++++.|+.|..||.|+.|+
T Consensus 123 ~~eI~a~~~G~i~~-------i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 123 MNEIEADKSGVVTE-------ILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred ceEEecCCCeEEEE-------EEcCCCCEeCCCCEEEEeC
Confidence 34799999999999 8999999999999999885
No 132
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=90.94 E-value=0.5 Score=49.62 Aligned_cols=64 Identities=20% Similarity=0.353 Sum_probs=47.3
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEec----CCeEEEEEecCeeeeEecCCCeEEEE--------------------
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAE-------------------- 266 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~----Gq~L~~IEamK~~~eI~Ap~sGvV~~-------------------- 266 (286)
.|.||+.|++.. +-++-|.|=. ||-+++.=.+ ..|.||++|+|+.
T Consensus 480 ~i~aP~~G~v~~--------L~~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLi 548 (627)
T PRK09824 480 GICSPMTGEVVP--------LEQVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLI 548 (627)
T ss_pred hcccccceEEee--------HHHCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEE
Confidence 589999999886 5566666655 6666665443 5778888887663
Q ss_pred ---------------EEcCCCCccCCCCeEEEEc
Q 023188 267 ---------------ILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 267 ---------------Ilve~Gd~V~~G~~L~~Ie 285 (286)
.++++||.|..||+|+++.
T Consensus 549 HiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D 582 (627)
T PRK09824 549 HVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFD 582 (627)
T ss_pred EechhhhhcCCCCceEEecCCCEEcCCCEEEEEc
Confidence 4667899999999999864
No 133
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=90.75 E-value=0.42 Score=43.07 Aligned_cols=48 Identities=25% Similarity=0.345 Sum_probs=39.1
Q ss_pred cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023188 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 282 (286)
Q Consensus 231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~ 282 (286)
++++|+.+++||.++.++-. ....+.-|.+ .++.++.||.|..|+.++
T Consensus 155 ~~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~kV~~Getvi 202 (206)
T PRK05305 155 YVKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQKVVAGETVL 202 (206)
T ss_pred eCCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCCEEEcccEEE
Confidence 67899999999999999876 4555666655 388999999999998543
No 134
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=90.73 E-value=0.29 Score=51.09 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=30.4
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.+|.||..|+|.+++++.||.|+.||+|+.||
T Consensus 526 ~~v~apm~G~V~~~~V~~Gd~V~~Gq~L~~iE 557 (596)
T PRK14042 526 GDITVAIPGSIIAIHVSAGDEVKAGQAVLVIE 557 (596)
T ss_pred CeEecCcceEEEEEEeCCCCEeCCCCEEEEEE
Confidence 46999999999999999999999999999986
No 135
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=90.70 E-value=0.58 Score=49.31 Aligned_cols=66 Identities=27% Similarity=0.410 Sum_probs=47.0
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEec----CCeEEEEEecCeeeeEecCCCeEEEEE-----------------
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIAEI----------------- 267 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~----Gq~L~~IEamK~~~eI~Ap~sGvV~~I----------------- 267 (286)
...|.||+.|++.. .-++-|.|=. ||-+++.-++ ..|.||++|+|+.+
T Consensus 498 ~~~v~aP~~G~vi~--------l~~v~D~vFs~~~~G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~ei 566 (648)
T PRK10255 498 IAELVSPITGDVVA--------LDQVPDEAFASKAVGDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEI 566 (648)
T ss_pred ceEEEecCCcEEEE--------cccCcchhhhcccccCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEE
Confidence 34699999999987 3444444332 6666665543 57888888877653
Q ss_pred ------------------EcCCCCccCCCCeEEEEc
Q 023188 268 ------------------LAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 268 ------------------lve~Gd~V~~G~~L~~Ie 285 (286)
++++||.|..||+|+++.
T Consensus 567 LIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D 602 (648)
T PRK10255 567 VVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMD 602 (648)
T ss_pred EEEeccchhccCCCCceEEecCCCEEcCCCEEEEEc
Confidence 377899999999999864
No 136
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=90.50 E-value=0.6 Score=49.05 Aligned_cols=75 Identities=28% Similarity=0.378 Sum_probs=48.0
Q ss_pred CCccCCcceEEEccCCCC----------C------------------CccccCCCEEecCCeEEEEEecC-------eee
Q 023188 210 PPLKCPMAGTFYRCPAPG----------E------------------PAFVKVGDKVQKGQVVCIIEAMK-------LMN 254 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~----------~------------------~~~VkvGd~V~~Gq~L~~IEamK-------~~~ 254 (286)
..|.||..|++....+-. . ..+|++||+|++||.|+.+.-.. ...
T Consensus 516 ~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~gF~~~v~~Gd~V~~G~~l~~~D~~~i~~~g~~~~~ 595 (627)
T PRK09824 516 GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGKFFTAHVNVGDKVNTGDLLIEFDIPAIREAGYDLTT 595 (627)
T ss_pred CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCeE
Confidence 589999999877542211 1 18899999999999999886532 222
Q ss_pred eEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 255 EIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 255 eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
.|.-.-......+....+..|..|+.|+.+
T Consensus 596 ~vvvtn~~~~~~~~~~~~~~v~~~~~~~~~ 625 (627)
T PRK09824 596 PVLISNSDDYTDVLPHATAQVSAGEPLLSI 625 (627)
T ss_pred EEEEEccccccceeeccCCcccCCCeEEEe
Confidence 222222222233334455679999988875
No 137
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=90.46 E-value=0.42 Score=47.27 Aligned_cols=39 Identities=33% Similarity=0.325 Sum_probs=32.5
Q ss_pred ccccCCCEEecCCeEEEEEecCe--eeeEecCCCeEEEEEEcCC
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMKL--MNEIEADQSGTIAEILAED 271 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK~--~~eI~Ap~sGvV~~Ilve~ 271 (286)
..|++||.|++||+|++ +|. -.-++||++|+|++|+.-+
T Consensus 43 mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~ 83 (447)
T COG1726 43 MKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE 83 (447)
T ss_pred ceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeeccc
Confidence 67999999999999987 443 3568999999999998544
No 138
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=90.36 E-value=0.5 Score=42.07 Aligned_cols=48 Identities=25% Similarity=0.380 Sum_probs=39.3
Q ss_pred cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023188 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 282 (286)
Q Consensus 231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~ 282 (286)
++++|+.|++||.++.++-. ....+.-|.+ .++.++.|+.|..|+.|+
T Consensus 135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~~V~~G~tli 182 (189)
T TIGR00164 135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGEKVTAGETVL 182 (189)
T ss_pred ecCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCCEEEeceEEE
Confidence 67899999999999999876 4455556655 378899999999999765
No 139
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=90.26 E-value=0.34 Score=47.58 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=29.6
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+||++|+|..+.+..|+.|..|++|+.|.
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~~v~~g~~l~~i~ 285 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQLVAAGAPLASLE 285 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCCEecCCCcEEEEE
Confidence 67999999999999999999999999999884
No 140
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=89.99 E-value=0.31 Score=45.30 Aligned_cols=35 Identities=20% Similarity=0.489 Sum_probs=31.8
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK 251 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK 251 (286)
..|+||..|++.. .++++||.|..||+|+.|+.+.
T Consensus 46 ~~~~a~~~g~~~~-------~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 46 NEVEAPAAGTLRR-------QVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred EEEecCCCeEEEE-------EEcCCCCEeCCCCEEEEEecCC
Confidence 4699999999998 7999999999999999998653
No 141
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=89.85 E-value=0.39 Score=45.56 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=27.6
Q ss_pred EecCCCeEEEE-------EEcCCCCccCCCCeEEEEc
Q 023188 256 IEADQSGTIAE-------ILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 256 I~Ap~sGvV~~-------Ilve~Gd~V~~G~~L~~Ie 285 (286)
|.|+..|+|.+ ++++.||.|+.||.|+.||
T Consensus 200 V~APmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIE 236 (274)
T PLN02983 200 LKSPMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIE 236 (274)
T ss_pred EeCCcCeEEEeccCCCCcceeCCCCEecCCCEEEEEE
Confidence 78999999988 5999999999999999986
No 142
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=89.42 E-value=0.47 Score=36.46 Aligned_cols=28 Identities=39% Similarity=0.500 Sum_probs=20.5
Q ss_pred CCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188 214 CPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 214 AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam 250 (286)
-+.+|... +++.||.|++||+||.|=+.
T Consensus 29 D~~vGi~l---------~~k~Gd~V~~Gd~l~~i~~~ 56 (75)
T PF07831_consen 29 DPAVGIEL---------HKKVGDRVEKGDPLATIYAN 56 (75)
T ss_dssp -TT-EEEE---------SS-TTSEEBTTSEEEEEEES
T ss_pred CcCcCeEe---------cCcCcCEECCCCeEEEEEcC
Confidence 35677765 58999999999999998554
No 143
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=89.08 E-value=0.47 Score=49.34 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=31.0
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
...|.||..|+|.++++++||.|..|++|+.|+
T Consensus 517 ~~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~iE 549 (582)
T TIGR01108 517 GTPVTAPIAGSIVKVKVSEGQTVAEGEVLLILE 549 (582)
T ss_pred CCeEeCCccEEEEEEEeCCCCEECCCCEEEEEE
Confidence 357999999999999999999999999999986
No 144
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=89.05 E-value=0.47 Score=49.48 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=30.8
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
-..|.||..|+|.++++++||.|+.|++|+.|+
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd~V~~Gd~l~~iE 556 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQTVAEGDVLLILE 556 (593)
T ss_pred CceEECCccEEEEEEEeCCCCEeCCCCEEEEEe
Confidence 347999999999999999999999999999986
No 145
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=88.68 E-value=1 Score=47.04 Aligned_cols=64 Identities=31% Similarity=0.457 Sum_probs=43.8
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEec----CCeEEEEEecCeeeeEecCCCeEEE---------------------
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQK----GQVVCIIEAMKLMNEIEADQSGTIA--------------------- 265 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~----Gq~L~~IEamK~~~eI~Ap~sGvV~--------------------- 265 (286)
.|.||+.|++.. +-++-|.|=. ||-+++.-. ...|.||++|+|.
T Consensus 464 ~i~aP~~G~~~~--------l~~v~D~vFs~~~~G~G~ai~P~---~~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eili 532 (610)
T TIGR01995 464 SLYAPVAGEMLP--------LNEVPDEVFSSGAMGKGIAILPT---EGEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILI 532 (610)
T ss_pred eeccccceEEee--------HhhCCCccccccCcCCceEeeCC---CCEEECCCCeEEEEEcCCCCEEEEEECCCcEEEE
Confidence 588999998886 4455555544 555555432 2466677776555
Q ss_pred --------------EEEcCCCCccCCCCeEEEEc
Q 023188 266 --------------EILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 266 --------------~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+.++++||.|..||+|+++.
T Consensus 533 HiGidTv~l~g~gF~~~v~~g~~V~~G~~l~~~d 566 (610)
T TIGR01995 533 HVGIDTVELNGEGFEILVKVGDHVKAGQLLLTFD 566 (610)
T ss_pred EeccchhccCCCCeEEEecCcCEEcCCCEEEEec
Confidence 35678899999999999864
No 146
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=88.52 E-value=0.36 Score=48.99 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=32.0
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam 250 (286)
...|.||..|++.+ +++++||.|..||+|+.|+..
T Consensus 134 ~~eI~Ap~~G~v~~-------ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 134 TIDIASPASGVIQE-------FLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred eeEEecCCCeEEEE-------EEeCCCCEecCCCEEEEeccC
Confidence 35799999999999 899999999999999999754
No 147
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=88.52 E-value=0.43 Score=35.12 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=28.2
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEE
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCII 247 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~I 247 (286)
..|+||..|++.+ ++++.|+.|..|+.|+.|
T Consensus 43 ~~i~ap~~G~v~~-------~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 43 SDVEAPKSGTVKK-------VLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred EEEEcCCCEEEEE-------EEeCCCCEECCCCEEEEC
Confidence 4699999999999 789999999999999864
No 148
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=88.30 E-value=0.85 Score=48.10 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=47.1
Q ss_pred CCCccCCcceEEEccCCCCC----------C------------------ccccCCCEEecCCeEEEEEecCe-------e
Q 023188 209 HPPLKCPMAGTFYRCPAPGE----------P------------------AFVKVGDKVQKGQVVCIIEAMKL-------M 253 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~----------~------------------~~VkvGd~V~~Gq~L~~IEamK~-------~ 253 (286)
...|.||..|++....+-.. + .+|++||+|++||.|+.+.-.++ .
T Consensus 535 ~~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i~~~g~~~~ 614 (648)
T PRK10255 535 DKIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMI 614 (648)
T ss_pred CCeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCCEEcCCCEEEEEcHHHHHhcCCCCe
Confidence 35899999999875432211 1 77999999999999998865432 2
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCC-eEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDT-PLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~-~L~~Ie 285 (286)
..|.-.-......+.......|..|+ +|+.++
T Consensus 615 ~~vvvtN~~~~~~~~~~~~~~v~~g~~~~~~i~ 647 (648)
T PRK10255 615 SPVVCSNIDDFSGLIIKAQGHVVAGQTPLYEIK 647 (648)
T ss_pred EEEEEEccccccceeeccCCceecCCceEEEEc
Confidence 33332222223223333333466665 687775
No 149
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=88.11 E-value=0.61 Score=48.57 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=30.9
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
...|.|+..|+|.++++++|+.|+.|++|+.|+
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd~V~~Gq~L~~ie 554 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGDKVKAGDTVLVLE 554 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCCEECCCCEEEEEe
Confidence 357999999999999999999999999999986
No 150
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=87.53 E-value=0.45 Score=47.39 Aligned_cols=34 Identities=12% Similarity=0.285 Sum_probs=30.7
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam 250 (286)
..|.++..|++.. .+|++||.|++||+|+.|+..
T Consensus 60 ~~vq~~~~G~v~~-------i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 60 SKIQSTSNNAIKE-------NYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred EEEEcCCCcEEEE-------EEcCCCCEecCCCEEEEECch
Confidence 4789999999998 799999999999999999763
No 151
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=87.50 E-value=0.6 Score=48.56 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=29.5
Q ss_pred eEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 255 EIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 255 eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.+.||..|+|+.|.|++|+.|..||+|+.+|
T Consensus 577 ~l~aPMpG~v~~v~V~~G~~V~~G~~lvvlE 607 (645)
T COG4770 577 ELLAPMPGTVVSVAVKEGQEVSAGDLLVVLE 607 (645)
T ss_pred ceecCCCceEEEEEecCCCEecCCCeEEEeE
Confidence 5899999999999999999999999999886
No 152
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=87.23 E-value=0.61 Score=45.77 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=31.2
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
...|+||.+|+|.+..+..|+.|..|.+|+.+-|
T Consensus 208 ~T~IrAP~dG~V~~~~v~~G~~V~~G~~l~alVp 241 (352)
T COG1566 208 RTVIRAPVDGYVTNLSVRVGQYVSAGTPLMALVP 241 (352)
T ss_pred CCEEECCCCceEEeecccCCCeecCCCceEEEec
Confidence 5689999999999999999999999999998754
No 153
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=87.11 E-value=0.81 Score=40.80 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=47.2
Q ss_pred CccCCcceEEEccCCCCCCccc--cCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFV--KVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 282 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~V--kvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~ 282 (286)
.|-+-.+|.+.. ++ ++|+.|++||.++.++= .-...+.-+.+- +.++.++.|+.|..|+.|+
T Consensus 138 ~Vga~~v~~I~~--------~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~-~~~~~v~~g~~V~~Ge~i~ 201 (202)
T PF02666_consen 138 QVGALLVGSIVL--------TVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDK-IFEWSVKPGQKVRAGETIG 201 (202)
T ss_pred EeccceeceeEE--------EecccCCCEEecCcEeCEEec-CCeEEEEEeCCC-ccccccCCCCEEEeeeEEe
Confidence 466777787775 45 68999999999999986 444444444333 3389999999999999986
No 154
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=86.82 E-value=0.85 Score=38.30 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.6
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
.+|++||+|++||.|+.+.-.
T Consensus 84 ~~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 84 SHVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred EEecCCCEEcCCCEEEEEcHH
Confidence 789999999999999988643
No 155
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=85.97 E-value=0.64 Score=39.55 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=17.2
Q ss_pred ccccCCCEEecCCeEEEEEecCe
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMKL 252 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK~ 252 (286)
++|++||+|++||.|+.+.-.++
T Consensus 88 ~~v~~G~~V~~G~~L~~~D~~~i 110 (132)
T PF00358_consen 88 TLVKEGDKVKAGQPLIEFDLEKI 110 (132)
T ss_dssp ESS-TTSEE-TTEEEEEE-HHHH
T ss_pred EEEeCCCEEECCCEEEEEcHHHH
Confidence 88999999999999999865443
No 156
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=85.61 E-value=1.2 Score=30.77 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=25.7
Q ss_pred cCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 258 ADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 258 Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+..+|.|..+++..|+.|.+|++|+.++
T Consensus 11 ~~~~g~i~~~~~~~g~~v~~~~~l~~~~ 38 (74)
T cd06849 11 SMTEGTIVEWLVKEGDSVEEGDVLAEVE 38 (74)
T ss_pred CCcEEEEEEEEECCCCEEcCCCEEEEEE
Confidence 6788999999999999999999999874
No 157
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=85.41 E-value=0.93 Score=50.90 Aligned_cols=33 Identities=24% Similarity=0.541 Sum_probs=30.6
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
...|.|+..|+|.++++++||.|+.|++|+.||
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gd~l~~iE 1164 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGDRVEAGQPLVILE 1164 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCCEECCCCEEEEEE
Confidence 346999999999999999999999999999986
No 158
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=85.16 E-value=1.1 Score=37.73 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=18.1
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
++|++||+|++||.|+.+.-
T Consensus 84 ~~vk~Gd~V~~G~~l~~~D~ 103 (124)
T cd00210 84 SHVEEGQRVKQGDKLLEFDL 103 (124)
T ss_pred EEecCCCEEcCCCEEEEEcH
Confidence 78999999999999998864
No 159
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=84.87 E-value=0.81 Score=45.85 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=32.2
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK 251 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK 251 (286)
...|.||..|++.+ .++++||.|..|++|+.|+...
T Consensus 87 ~~ei~Ap~~G~v~~-------i~v~~G~~V~~G~~L~~I~~~~ 122 (418)
T PTZ00144 87 SVDIRAPASGVITK-------IFAEEGDTVEVGAPLSEIDTGG 122 (418)
T ss_pred EEEEecCCCeEEEE-------EEeCCCCEecCCCEEEEEcCCC
Confidence 35799999999998 7999999999999999998643
No 160
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=83.34 E-value=2 Score=37.78 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=34.0
Q ss_pred ccccCCCEEecCCeEEEEEecC-------eeeeEecCCCeEE-EEEEcCCCCccCCCCeEEEE
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMK-------LMNEIEADQSGTI-AEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK-------~~~eI~Ap~sGvV-~~Ilve~Gd~V~~G~~L~~I 284 (286)
.+|++||+|++||.|+...-+. +..+|.-.-...+ .-+....+..|..|+.|+.+
T Consensus 91 ~~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVvtN~~~~~~~~~~~~~~~v~~g~~~~~~ 153 (156)
T COG2190 91 SLVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVVTNMDDFKKIVKLSGGGEVKAGETLLLV 153 (156)
T ss_pred EEeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEEEcchheeeeEeeccCcceecCCeeEEE
Confidence 7899999999999999886542 2233322222222 22333344477888888764
No 161
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=81.91 E-value=1.3 Score=44.17 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=32.3
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK 251 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK 251 (286)
...|.||..|++.+ +++++||.|..|++|+.|+...
T Consensus 45 ~~ei~a~~~G~v~~-------i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 45 VLEVPAPAAGVLSE-------ILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred eeEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEecCC
Confidence 35799999999998 7999999999999999998654
No 162
>PRK12999 pyruvate carboxylase; Reviewed
Probab=81.83 E-value=1.6 Score=48.82 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=30.3
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|.|+..|+|.+++++.||.|..||+|+.|+
T Consensus 1077 ~~v~apm~G~v~~i~v~~Gd~V~~G~~L~~le 1108 (1146)
T PRK12999 1077 GHVGAPMPGSVVTVLVKEGDEVKAGDPLAVIE 1108 (1146)
T ss_pred ceEeCCceEEEEEEEcCCCCEECCCCEEEEEE
Confidence 57999999999999999999999999999886
No 163
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=81.82 E-value=3 Score=41.02 Aligned_cols=53 Identities=28% Similarity=0.372 Sum_probs=39.0
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEE--EEEecCeeeeEecCCCeEEE
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVC--IIEAMKLMNEIEADQSGTIA 265 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~--~IEamK~~~eI~Ap~sGvV~ 265 (286)
.|-|-..|.+.+.-.-...+.|++||.|++||+|. .|+......+ -..+|.|.
T Consensus 191 ~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG~i~~~~~~~~--v~A~G~V~ 245 (385)
T PF06898_consen 191 NLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISGVIEIEGDEQE--VHADGDVK 245 (385)
T ss_pred ceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEeeeEcCCCCceE--ECCcEEEE
Confidence 57788889888876667778999999999999995 6655444334 44556554
No 164
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=81.74 E-value=3.1 Score=41.01 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=30.4
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEE
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVC 245 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~ 245 (286)
..|.|-..|.+.+.-.-...+.|++||.|++||+|.
T Consensus 187 ~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLI 222 (382)
T TIGR02876 187 RNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLI 222 (382)
T ss_pred ccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEE
Confidence 358888889888876666778999999999999996
No 165
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=81.46 E-value=1.3 Score=39.76 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=28.0
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEE
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIE 248 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IE 248 (286)
.|+||+.|++.. .++.+|+.|..|+.|+.|-
T Consensus 90 ~i~AP~dG~V~~-------~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 90 EVRSPFDGYITQ-------KSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred EEECCCCeEEEE-------EEcCCCCEeCCCCceEEEE
Confidence 479999999998 7899999999999999764
No 166
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=81.33 E-value=1.4 Score=40.40 Aligned_cols=36 Identities=31% Similarity=0.511 Sum_probs=31.5
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam 250 (286)
....|+||+.|++.. ..+..|+.|..|+.|+.|...
T Consensus 133 ~~~~i~AP~~G~V~~-------~~~~~G~~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 133 RYTEIRAPFDGTIGR-------RLVEVGAYVTAGQTLATIVDL 168 (322)
T ss_pred ccCEEECCCCcEEEE-------EEcCCCceeCCCCcEEEEEcC
Confidence 345899999999998 789999999999999988654
No 167
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=80.96 E-value=1.3 Score=40.13 Aligned_cols=32 Identities=31% Similarity=0.541 Sum_probs=29.1
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEe
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEa 249 (286)
.|.+...|.+.. .+|++||.|++||+|+.++.
T Consensus 68 ~v~~~~~G~v~~-------i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 68 EVLARVAGIVAE-------ILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred eEecccccEEEE-------EEccCCCeecCCCEEEEECC
Confidence 577778899988 89999999999999999987
No 168
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=79.36 E-value=1.8 Score=43.00 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=31.8
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam 250 (286)
..|-||..|++.+ .++++||+|..|++|+.|+..
T Consensus 46 ~EV~ap~~G~l~~-------i~~~~G~~V~Vg~~I~~i~~~ 79 (404)
T COG0508 46 MEVPAPDAGVLAK-------ILVEEGDTVPVGAVIARIEEE 79 (404)
T ss_pred EEecCCCCeEEEE-------EeccCCCEEcCCCeEEEEecC
Confidence 4799999999999 799999999999999999886
No 169
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=79.29 E-value=1.4 Score=43.79 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=31.4
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam 250 (286)
..|.||..|++.. .+|++||+|+.||.|+.|+..
T Consensus 116 v~V~sP~sGvi~e-------~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 116 VEVPSPASGVITE-------LLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred eeccCCCcceeeE-------EecCCCCcccCCceeEEecCC
Confidence 4799999999998 799999999999999999875
No 170
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=79.21 E-value=1.8 Score=43.13 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=31.9
Q ss_pred CCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEec
Q 023188 209 HPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEam 250 (286)
...|.||..|++.+ +++++||.|..|++|+.|+..
T Consensus 43 ~~ei~a~~~G~v~~-------i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 43 VLEVPSPADGVLQE-------ILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred eeEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEecC
Confidence 35799999999999 899999999999999999865
No 171
>PRK12784 hypothetical protein; Provisional
Probab=79.04 E-value=1.9 Score=34.00 Aligned_cols=36 Identities=31% Similarity=0.389 Sum_probs=31.2
Q ss_pred cCe-eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 250 MKL-MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 250 mK~-~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
||. .-+|.||+-|+|.++++.+++.|-.=++||.|+
T Consensus 1 mk~~ie~iyS~~~G~Vekifi~esSyVYEWEkL~~I~ 37 (84)
T PRK12784 1 MKTRMEEICSSYEGKVEEIFVNESSYVYEWEKLMMIR 37 (84)
T ss_pred CceehhhhcCccccEEEEEEEcCCceEEeeeeeeEEe
Confidence 443 347999999999999999999999999999885
No 172
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=78.79 E-value=2.9 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=18.4
Q ss_pred CCCccccCCCEEecCCeEEEEE
Q 023188 227 GEPAFVKVGDKVQKGQVVCIIE 248 (286)
Q Consensus 227 ~~~~~VkvGd~V~~Gq~L~~IE 248 (286)
+...+|+.|+.|++||+||.-.
T Consensus 2421 ga~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2421 GAKLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred ccEEEecCCCEecCCCEEEEEc
Confidence 4447899999999999998754
No 173
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=78.77 E-value=3.3 Score=35.96 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=43.4
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCee-eeEecCCCeEEEEEE
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLM-NEIEADQSGTIAEIL 268 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~-~eI~Ap~sGvV~~Il 268 (286)
...-|.-|.++. +.+.+|+.|.+||.++-+.+-|.. .=+.+|.+|+|.-|.
T Consensus 93 ll~iPvEGYvVt-------pIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~ 144 (161)
T COG4072 93 LLLIPVEGYVVT-------PIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYID 144 (161)
T ss_pred EEEEecCcEEEE-------EeecccchhcCCCceeEEEecccceEEecCCCCcEEEEEe
Confidence 455677888777 789999999999999999999876 468999999997665
No 174
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=76.65 E-value=2.3 Score=46.28 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=29.5
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|-|+..|+|+++.|+.|+.|..||+|+.|+
T Consensus 1080 ~higApmpG~Vv~v~V~~G~~Vk~Gd~l~~ie 1111 (1149)
T COG1038 1080 GHIGAPMPGVVVEVKVKKGDKVKKGDVLAVIE 1111 (1149)
T ss_pred cccCCCCCCceEEEEEccCCeecCCCeeeehh
Confidence 35779999999999999999999999999876
No 175
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=75.02 E-value=4 Score=46.98 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=46.2
Q ss_pred CCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 234 VGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 234 vGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.|-.+.-|--.|.+|...--..+++|..|.+.+.+|++|+.|..|++-++||
T Consensus 666 ~~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~hv~~Gq~YAeiE 717 (2196)
T KOG0368|consen 666 DGYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGEHVEAGQPYAEIE 717 (2196)
T ss_pred ceEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCCceecCCeeeehe
Confidence 3556777888899998888888999999999999999999999999999886
No 176
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=74.43 E-value=4.4 Score=38.03 Aligned_cols=51 Identities=22% Similarity=0.216 Sum_probs=38.9
Q ss_pred cccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 231 FVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 231 ~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
++..|+.|++||.++.++=. ....+.-+. |.+ ++.++.|+.|..|+.|..|
T Consensus 215 ~~~~~~~v~kGee~G~F~fG-STVvllf~~-~~~-~~~v~~g~~V~~Ge~ig~~ 265 (265)
T PRK03934 215 YEYENLKLKKGEELGNFEMG-STIVLFSQK-GSL-EFNLKAGKSVKFGESIGEI 265 (265)
T ss_pred eccCCceEccccEeeEEccC-CEEEEEEeC-Ccc-eEccCCCCEEEcchhhccC
Confidence 34569999999999999875 444444444 344 6789999999999998764
No 177
>COG3608 Predicted deacylase [General function prediction only]
Probab=73.86 E-value=3.6 Score=40.18 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=28.5
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
--|.||..|.| +.+++-||.|+.|+.|+.|.+
T Consensus 257 ~~i~Ap~~G~v-~~~v~lGd~VeaG~~la~i~~ 288 (331)
T COG3608 257 EMIRAPAGGLV-EFLVDLGDKVEAGDVLATIHD 288 (331)
T ss_pred ceeecCCCceE-EEeecCCCcccCCCeEEEEec
Confidence 35899999977 899999999999999999853
No 178
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=73.58 E-value=3.5 Score=41.11 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=31.4
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK 251 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK 251 (286)
..+.+|..|++.+ +++++||.|..|++|+.|+..+
T Consensus 42 ~ev~a~~~G~v~~-------i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 42 IEITSRYKGKVAQ-------INFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred EEEecCCCEEEEE-------EEeCCCCEeCCCCEEEEEeccC
Confidence 4799999999998 8999999999999999997543
No 179
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=73.17 E-value=6.4 Score=36.21 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=24.8
Q ss_pred CccCCcceEEEccCCC-CC-----------------CccccCCCEEecCCeEEEEEec
Q 023188 211 PLKCPMAGTFYRCPAP-GE-----------------PAFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~-~~-----------------~~~VkvGd~V~~Gq~L~~IEam 250 (286)
.|+||+.|++...-+. .. ..++++|+.|..|+.|+.|-.+
T Consensus 136 ~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~v~~g~~l~~i~~~ 193 (328)
T PF12700_consen 136 QIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQYVAAGQPLFTIADL 193 (328)
T ss_dssp HEE-SSSEEEE------------EES----------E-TT-TT-EETSTTCSEEEEEE
T ss_pred ccccchhhhccccccccccccccccccccccccccceeccCCCCEECCCceeeeeccC
Confidence 3999999999900000 00 2689999999999999977443
No 180
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=72.28 E-value=4.3 Score=31.57 Aligned_cols=20 Identities=45% Similarity=0.642 Sum_probs=16.9
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
|++++|+.|++|++|+.++.
T Consensus 49 ~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 49 WLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp ESS-TT-EEETTCEEEEEEE
T ss_pred EEeCCCCCccCCcEEEEEEe
Confidence 89999999999999999975
No 181
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=70.97 E-value=4 Score=40.97 Aligned_cols=34 Identities=15% Similarity=0.230 Sum_probs=31.4
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCE-EecCCeEEEEEec
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDK-VQKGQVVCIIEAM 250 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~-V~~Gq~L~~IEam 250 (286)
..|.||..|++.+ +++++||. |..|++|++|+..
T Consensus 43 ~ei~a~~~G~l~~-------i~v~~g~~~v~vG~~l~~i~~~ 77 (435)
T TIGR01349 43 MEFEAVEEGYLAK-------ILVPEGTKDVPVNKPIAVLVEE 77 (435)
T ss_pred eEEcCCCCEEEEE-------EEECCCCEEecCCCEEEEEecc
Confidence 5799999999999 89999999 9999999999764
No 182
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=70.26 E-value=4.2 Score=38.05 Aligned_cols=64 Identities=11% Similarity=0.050 Sum_probs=45.6
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
.|-+-++|.+.- ...|+.|++||.++.++-. -...+.-+.+-.--+..+..|+.|..|+.|..+
T Consensus 195 ~Vga~~Vg~I~~---------~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~~V~~Ge~ig~~ 258 (259)
T PRK03140 195 KVGAMFVNSIEL---------THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQEVRLGEKIGTR 258 (259)
T ss_pred EEeeEEeeEEEE---------ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCCEEEcChhhccc
Confidence 345555565542 4579999999999999987 555555665432235677899999999998754
No 183
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=69.51 E-value=3.7 Score=44.06 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=29.3
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|-||..|+|.+|.|+.|+.|..|++|+.+.
T Consensus 1107 g~igAPMpG~vieikvk~G~kV~Kgqpl~VLS 1138 (1176)
T KOG0369|consen 1107 GHIGAPMPGTVIEIKVKEGAKVKKGQPLAVLS 1138 (1176)
T ss_pred ccccCCCCCceEEEEEecCceecCCCceEeee
Confidence 46789999999999999999999999999863
No 184
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=69.45 E-value=3.9 Score=42.45 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=28.6
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.-+.+|..|+|.+++|+.||.|..|+.|+.++
T Consensus 602 ~v~~aPMpG~Iekv~Vkpgd~V~~Gq~l~Vl~ 633 (670)
T KOG0238|consen 602 GVIVAPMPGIIEKVLVKPGDKVKEGQELVVLI 633 (670)
T ss_pred CceecCCCCeeeeeeccchhhhcccCceEEEE
Confidence 34789999999999999999999999988763
No 185
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=69.14 E-value=13 Score=42.47 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=30.6
Q ss_pred ccccCCCEEecCCeEEEEEec-------CeeeeEecCCCeEE
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM-------KLMNEIEADQSGTI 264 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam-------K~~~eI~Ap~sGvV 264 (286)
.||+.|+.|+++|+|+++-+. |....|.|+.+|.|
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI 446 (1331)
T PRK02597 405 LFVDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEV 446 (1331)
T ss_pred EEEECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEE
Confidence 689999999999999999874 35568999999976
No 186
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=68.36 E-value=5.5 Score=39.23 Aligned_cols=35 Identities=34% Similarity=0.546 Sum_probs=31.7
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK 251 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK 251 (286)
..|.||..|++.+ +++++|+.|..|++|+.|+...
T Consensus 46 ~~i~Ap~~G~i~~-------~~v~~G~~v~~G~~l~~i~~~~ 80 (411)
T PRK11856 46 VEIPSPVAGTVAK-------LLVEEGDVVPVGSVIAVIEEEG 80 (411)
T ss_pred EEEeCCCCeEEEE-------EecCCCCEeCCCCEEEEEecCC
Confidence 4799999999998 7999999999999999998654
No 187
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=67.66 E-value=6.2 Score=37.29 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=30.3
Q ss_pred cCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 250 MKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 250 mK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
--.+.-|+|+.+|++.. .++-|+.|+.||+|+.|.
T Consensus 161 ~~~Er~IrAp~~Gi~~~-~~~IGd~V~KGqvLa~I~ 195 (256)
T TIGR03309 161 YTHERVLRAPADGIVTP-TKAIGDSVKKGDVIATVG 195 (256)
T ss_pred ccceEEEECCCCeEEee-ccCCCCEEeCCCEEEEEc
Confidence 34467899999999965 899999999999999874
No 188
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=64.45 E-value=8 Score=36.28 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=26.8
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEE
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIE 248 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IE 248 (286)
+...|+||+.|++.. .++..|+.|.. +.|+.|-
T Consensus 203 ~~~~i~AP~dG~V~~-------~~~~~G~~v~~-~~l~~i~ 235 (327)
T TIGR02971 203 ELTYVKAPIDGRVLK-------IHAREGEVIGS-EGILEMG 235 (327)
T ss_pred hcCEEECCCCeEEEE-------EecCCCCccCC-CccEEEe
Confidence 345899999999998 68999999986 6666553
No 189
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=62.65 E-value=9.8 Score=35.94 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=28.8
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
...|+|+.+|.+ +..++.|+.|..||+|++|.
T Consensus 231 ~~~v~Ap~~Gi~-~~~~~~G~~V~~Gq~lg~I~ 262 (293)
T cd06255 231 RDWVAAIHGGLF-EPSVPAGDTIPAGQPLGRVV 262 (293)
T ss_pred eEEEecCCCeEE-EEecCCCCEecCCCEEEEEE
Confidence 678999999977 67889999999999999984
No 190
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=60.91 E-value=15 Score=35.79 Aligned_cols=19 Identities=11% Similarity=0.309 Sum_probs=14.1
Q ss_pred EEEcCCCCccCCCCeEEEE
Q 023188 266 EILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 266 ~Ilve~Gd~V~~G~~L~~I 284 (286)
+++|++||.|+.||.|.++
T Consensus 271 ~i~Vk~Gq~V~~Gq~Ig~~ 289 (319)
T PRK10871 271 TMLVREQQEVKAGQKIATM 289 (319)
T ss_pred ccccCCcCEECCCCeEEeE
Confidence 4567778888888888765
No 191
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=60.87 E-value=11 Score=35.34 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=29.2
Q ss_pred CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 251 KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 251 K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+....|+|+.+|.+. ..++.|+.|..||+|++|.
T Consensus 217 ~~~~~v~A~~~G~~~-~~~~~Gd~V~~G~~ig~i~ 250 (287)
T cd06251 217 RSSVWVRAPQGGLLR-SLVKLGDKVKKGQLLATIT 250 (287)
T ss_pred cCCeEEecCCCeEEE-EecCCCCEECCCCEEEEEE
Confidence 334689999999885 5899999999999999884
No 192
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=60.50 E-value=8.1 Score=40.10 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 260 QSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 260 ~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..|+|.++++++||.|+.|++|+.|+
T Consensus 125 ~eg~I~~W~vkeGD~V~~g~~l~eVE 150 (539)
T PLN02744 125 TEGNIARWLKKEGDKVSPGEVLCEVE 150 (539)
T ss_pred ceeEEEEEEecCCCEecCCCeeEEEe
Confidence 45999999999999999999999986
No 193
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=59.87 E-value=8.2 Score=29.57 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.2
Q ss_pred EEEcCCCCccCCCCeEEEEc
Q 023188 266 EILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 266 ~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.++++-||.|+.|++|++|.
T Consensus 35 ~l~~k~Gd~V~~Gd~l~~i~ 54 (75)
T PF07831_consen 35 ELHKKVGDRVEKGDPLATIY 54 (75)
T ss_dssp EESS-TTSEEBTTSEEEEEE
T ss_pred EecCcCcCEECCCCeEEEEE
Confidence 58899999999999999973
No 194
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=59.85 E-value=11 Score=35.83 Aligned_cols=32 Identities=22% Similarity=0.151 Sum_probs=28.3
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..-|+|+.+|.+ .-+++.|+.|..||+|++|.
T Consensus 229 ~~~v~A~~~Gl~-~~~~~~G~~V~~Gq~lg~i~ 260 (298)
T cd06253 229 VVYVNAETSGIF-VPAKHLGDIVKRGDVIGEIV 260 (298)
T ss_pred eEEEEcCCCeEE-EECcCCCCEECCCCEEEEEe
Confidence 568999999987 66789999999999999874
No 195
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=59.17 E-value=12 Score=36.57 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=27.9
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..-|+|+.+|.+ +-+++.|+.|+.|++|++|.
T Consensus 289 ~~~v~Ap~~Gl~-~~~~~~Gd~V~~G~~lg~I~ 320 (359)
T cd06250 289 VEMLYAPAGGMV-VYRAAPGDWVEAGDVLAEIL 320 (359)
T ss_pred cEEEeCCCCeEE-EEecCCCCEecCCCEEEEEE
Confidence 345999999987 67789999999999999874
No 196
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=59.11 E-value=13 Score=34.97 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=29.1
Q ss_pred CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 251 KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 251 K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.-..-++|+.+|.+ +.+++.|+.|..||+|++|.
T Consensus 221 ~~~~~v~Ap~~G~~-~~~~~~G~~V~~G~~lg~i~ 254 (288)
T cd06254 221 DDVYYVTSPASGLW-YPFVKAGDTVQKGALLGYVT 254 (288)
T ss_pred cCCEEEecCCCeEE-EEecCCCCEecCCCEEEEEE
Confidence 44568899999977 67789999999999999873
No 197
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=58.92 E-value=16 Score=38.43 Aligned_cols=53 Identities=34% Similarity=0.599 Sum_probs=32.9
Q ss_pred ccccCCCEEecCCeEEEEEec-CeeeeEec--CCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM-KLMNEIEA--DQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam-K~~~eI~A--p~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
+.+++||.|..||+|+.+.-. -..+-|-. ...|++++|. .+|+ -...+.++++
T Consensus 122 p~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i~-~~G~-ytv~~~i~~~ 177 (586)
T PRK04192 122 PTVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEIV-SEGD-YTVDDTIAVL 177 (586)
T ss_pred cccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEEc-cCCC-ceeeeEEEEE
Confidence 468999999999999987654 23333333 3478887773 3443 2234444444
No 198
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=58.62 E-value=9.2 Score=38.34 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=25.9
Q ss_pred CCCccCCcceEEEccC------------------------CCCCCccccCCCEEecCCeEEEEE
Q 023188 209 HPPLKCPMAGTFYRCP------------------------APGEPAFVKVGDKVQKGQVVCIIE 248 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p------------------------~~~~~~~VkvGd~V~~Gq~L~~IE 248 (286)
...|+|+..|++.... .-+...+++.||.|++||+||.|=
T Consensus 333 ~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~ 396 (405)
T TIGR02644 333 KEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLY 396 (405)
T ss_pred EEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEe
Confidence 3468888888887422 122336677777777777777664
No 199
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=58.51 E-value=22 Score=35.39 Aligned_cols=43 Identities=28% Similarity=0.441 Sum_probs=31.2
Q ss_pred ccccCCCEEecCCeEEEEEec-CeeeeEecC--CCeEEEEEEcCCCC
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM-KLMNEIEAD--QSGTIAEILAEDGK 273 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam-K~~~eI~Ap--~sGvV~~Ilve~Gd 273 (286)
+.+++||.|..||+++.+.-. -..+.|-.| ..|+|+.|. .+|+
T Consensus 53 p~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~~-~~g~ 98 (369)
T cd01134 53 PLVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYIA-PAGD 98 (369)
T ss_pred eccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEEe-cCCC
Confidence 458999999999999988543 355666555 489998764 3455
No 200
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=58.36 E-value=23 Score=27.20 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=8.9
Q ss_pred CccCCcceEEEc
Q 023188 211 PLKCPMAGTFYR 222 (286)
Q Consensus 211 ~I~AP~~G~~~~ 222 (286)
.|.||+.|++..
T Consensus 15 ~V~A~~~G~V~~ 26 (96)
T PF01551_consen 15 PVYAPADGKVVF 26 (96)
T ss_dssp EEEESSSEEEEE
T ss_pred EEEeCccEEEEE
Confidence 578888887765
No 201
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=58.05 E-value=17 Score=37.42 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=33.7
Q ss_pred EEEEecCeeeeEecCCCeEEEE------------------------EEcCCCCccCCCCeEEEEc
Q 023188 245 CIIEAMKLMNEIEADQSGTIAE------------------------ILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 245 ~~IEamK~~~eI~Ap~sGvV~~------------------------Ilve~Gd~V~~G~~L~~Ie 285 (286)
..+...+...+|.|+.+|.|.. ++++.||.|+.|++|++|.
T Consensus 405 ~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~ 469 (493)
T TIGR02645 405 DDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIY 469 (493)
T ss_pred cccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEE
Confidence 4455567788999999998876 5788999999999999984
No 202
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=57.63 E-value=9 Score=29.49 Aligned_cols=21 Identities=43% Similarity=0.642 Sum_probs=16.5
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
..|+.||.|++||.|+.+...
T Consensus 55 ~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 55 VSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp ESS-TTSEE-TTCEEEEEBSC
T ss_pred ccceecccccCCCEEEecCCC
Confidence 459999999999999998754
No 203
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=57.46 E-value=9.2 Score=33.43 Aligned_cols=38 Identities=18% Similarity=0.408 Sum_probs=25.0
Q ss_pred EEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 237 KVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 237 ~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.+++|+.||.+++ .|..+-+.+..|+.|..|+.|+.+.
T Consensus 75 ~l~~G~~L~l~~v-----------eG~~v~~i~~~G~rV~~gd~lA~v~ 112 (150)
T PF09891_consen 75 LLKKGTELCLVPV-----------EGYQVYPIVDEGDRVRKGDRLAYVT 112 (150)
T ss_dssp EE-TT-B-EEEEE-----------ESSEEEESS-TSEEE-TT-EEEEEE
T ss_pred EECCCCEEEEEEe-----------cceEEEEEcccCcEeccCcEEEEEE
Confidence 4667888888876 4556678888999999999999863
No 204
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=57.32 E-value=11 Score=38.43 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=30.4
Q ss_pred CCccCCcceEEEccCCCCCCccccCCC-EEecCCeEEEEEec
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGD-KVQKGQVVCIIEAM 250 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd-~V~~Gq~L~~IEam 250 (286)
..|.||..|++.+ +++++|+ .|+.|++|++|+..
T Consensus 46 ~ev~A~~~G~v~~-------i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 46 MEVEAVDEGTLGK-------ILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred eeecCCCceEEEE-------EEecCCCcEeCCCCEEEEEccC
Confidence 5799999999999 8999995 79999999999653
No 205
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=56.58 E-value=14 Score=35.63 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=27.6
Q ss_pred eeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 254 NEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 254 ~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.-|+|+.+|.+ ...++.|+.|+.||+|++|.
T Consensus 256 ~~v~Ap~~Gi~-~~~v~~G~~V~~G~~lg~I~ 286 (325)
T TIGR02994 256 CFIFAEDDGLI-EFMIDLGDPVSKGDVIARVY 286 (325)
T ss_pred eEEEcCCCeEE-EEecCCCCEeCCCCEEEEEE
Confidence 35999999988 68899999999999999884
No 206
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=56.16 E-value=20 Score=33.44 Aligned_cols=47 Identities=11% Similarity=0.105 Sum_probs=35.9
Q ss_pred cccCCCEEec-CCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 231 FVKVGDKVQK-GQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 231 ~VkvGd~V~~-Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
.++.|+.|.+ |++|+... ..++++|++|.| ++-....|..|+..++|
T Consensus 225 ~~~~~~~~~~~G~~la~~~----~~~~~ap~~g~v---l~~p~~~~~~G~~~~~l 272 (272)
T cd06910 225 PFRGGETIPRAGTVIAHDG----GEPIRTPYDDCV---LIMPSLRPLRGQTAVRL 272 (272)
T ss_pred CcCCcceeccCCcEEEEeC----CeEEeCCCCCEE---EEccCCCCCCCceeeeC
Confidence 4677999999 99999943 389999999966 34455666688877653
No 207
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=55.76 E-value=22 Score=39.71 Aligned_cols=54 Identities=26% Similarity=0.450 Sum_probs=36.0
Q ss_pred ccccCCCEEecCCeEEEEE-ecCeeeeEecCC--CeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 230 AFVKVGDKVQKGQVVCIIE-AMKLMNEIEADQ--SGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IE-amK~~~eI~Ap~--sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+.+++||+|..||+++.|. +.-..+-|-.|. .|+|+.|. ..|+ -...+.+++|+
T Consensus 122 p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~~-~~g~-~~~~~~~~~~~ 178 (1017)
T PRK14698 122 PKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEIA-DEGE-YTIEEVIAKVK 178 (1017)
T ss_pred eeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEEc-CCCC-cceeeEEEEEE
Confidence 3489999999999999875 433445554444 79998884 4565 23345555554
No 208
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=54.39 E-value=26 Score=36.94 Aligned_cols=53 Identities=26% Similarity=0.416 Sum_probs=36.0
Q ss_pred cccCCCEEecCCeEEEE-EecCeeeeEecC--CCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 231 FVKVGDKVQKGQVVCII-EAMKLMNEIEAD--QSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 231 ~VkvGd~V~~Gq~L~~I-EamK~~~eI~Ap--~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.+++||.|..||+++.+ |+.-..+.|-.| ..|+|++|. .+|+ ....+.+++++
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i~-~~g~-ytv~~~i~~~~ 178 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYIA-PAGN-YTVDDTVLEVE 178 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEEc-cCCC-ceeeeEEEEEe
Confidence 68999999999999976 444445555544 469998774 4565 33455665553
No 209
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=54.28 E-value=24 Score=33.70 Aligned_cols=34 Identities=24% Similarity=0.114 Sum_probs=29.1
Q ss_pred CeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 251 KLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 251 K~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+...-|+|+.+|.+ .-.++.|+.|+.|++|++|.
T Consensus 242 ~~~~~v~A~~~G~~-~~~~~~G~~V~~G~~lg~i~ 275 (316)
T cd06252 242 DARCYVFAPHPGLF-EPLVDLGDEVSAGQVAGRIH 275 (316)
T ss_pred CCcEEEEcCCCeEE-EEecCCCCEEcCCCEEEEEE
Confidence 34567999999977 67899999999999999874
No 210
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=51.34 E-value=12 Score=29.00 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=18.9
Q ss_pred eEEEEEEcCCCCccCCCCeEEEEc
Q 023188 262 GTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 262 GvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
|.-.+++++||+.|..|++|++++
T Consensus 44 ~~~v~~~~~dG~~v~~g~~i~~i~ 67 (88)
T PF02749_consen 44 GLEVEWLVKDGDRVEPGDVILEIE 67 (88)
T ss_dssp TEEEEESS-TT-EEETTCEEEEEE
T ss_pred cEEEEEEeCCCCCccCCcEEEEEE
Confidence 555679999999999999999985
No 211
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=50.79 E-value=9.9 Score=35.96 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=26.3
Q ss_pred eeeEecCCCeEEEEEEcCCCCccCCCCeEEE
Q 023188 253 MNEIEADQSGTIAEILAEDGKSVSVDTPLLV 283 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~ 283 (286)
.--+-.++-|..-+++|++||.|..||+||+
T Consensus 29 ~al~~~Df~g~~Pkm~VkeGD~Vk~Gq~LF~ 59 (257)
T PF05896_consen 29 VALLPDDFPGMKPKMLVKEGDRVKAGQPLFE 59 (257)
T ss_pred EEEcCcccCCCCccEEeccCCEEeCCCeeEe
Confidence 3345567888889999999999999999996
No 212
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=49.93 E-value=24 Score=35.74 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=38.9
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
..|+||..|+|..+ +||=-=| .|.+|+..+.++-|.+. .-.|+|..|+.|..|++|+.+
T Consensus 332 a~V~A~AdG~VvyA-----~~l~GYG-------~vvIldhG~gy~slyg~----~~~i~v~~G~~V~AGepIa~~ 390 (420)
T COG4942 332 ATVKAIADGRVVYA-----DWLRGYG-------LVVILDHGGGYHSLYGG----NQSILVNPGQFVKAGEPIALV 390 (420)
T ss_pred CeeeeecCceEEec-----hhhccCc-------eEEEEEcCCccEEEecc----cceeeecCCCEeecCCchhhc
Confidence 45666666665542 2443333 34467777777777665 346888999999999998764
No 213
>PRK04350 thymidine phosphorylase; Provisional
Probab=49.84 E-value=27 Score=35.92 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=33.1
Q ss_pred EEEecCeeeeEecCCCeEEEE------------------------EEcCCCCccCCCCeEEEEc
Q 023188 246 IIEAMKLMNEIEADQSGTIAE------------------------ILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 246 ~IEamK~~~eI~Ap~sGvV~~------------------------Ilve~Gd~V~~G~~L~~Ie 285 (286)
.+..-+...+|.|+.+|.|.. ++++.||.|+.|++|++|.
T Consensus 398 ~~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~ 461 (490)
T PRK04350 398 DIPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIH 461 (490)
T ss_pred hcCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEe
Confidence 355567788899999998876 4778999999999999984
No 214
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=48.45 E-value=13 Score=34.23 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=36.5
Q ss_pred CCEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEE
Q 023188 235 GDKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLV 283 (286)
Q Consensus 235 Gd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~ 283 (286)
|+.|++||.++.++-. -...+.-+.+-.--++.+..|+.|..|+.|..
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQEVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCCEEEcChhhcc
Confidence 9999999999999875 45555555432222678899999999998864
No 215
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=48.07 E-value=13 Score=37.79 Aligned_cols=20 Identities=30% Similarity=0.747 Sum_probs=18.1
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
.+++.||.|++||+|+.|=+
T Consensus 384 l~~k~Gd~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 384 DLLPLGDRVEKGEPLAVVHA 403 (437)
T ss_pred eccCCcCEeCCCCeEEEEEC
Confidence 78999999999999999863
No 216
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=48.05 E-value=15 Score=37.51 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 261 SGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 261 sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.|.|+++..++||.++.|+.|++||
T Consensus 52 eGnIvsW~kKeGdkls~GDvl~EVE 76 (470)
T KOG0557|consen 52 EGNIVSWKKKEGDKLSAGDVLLEVE 76 (470)
T ss_pred CCceeeEeeccCCccCCCceEEEEe
Confidence 6899999999999999999999997
No 217
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=47.41 E-value=13 Score=37.62 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.1
Q ss_pred CCccccCCCEEecCCeEEEEEe
Q 023188 228 EPAFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 228 ~~~~VkvGd~V~~Gq~L~~IEa 249 (286)
...+++.||.|++||+||.|=+
T Consensus 383 i~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 383 LTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred eEEccCCcCEECCCCeEEEEeC
Confidence 3378999999999999999864
No 218
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=46.48 E-value=15 Score=35.25 Aligned_cols=21 Identities=43% Similarity=0.581 Sum_probs=19.6
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
|+++.||.|++||+|+.++.+
T Consensus 68 ~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 68 WLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred EEcCCCCEeCCCCEEEEEecc
Confidence 799999999999999999874
No 219
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=45.75 E-value=40 Score=35.44 Aligned_cols=53 Identities=32% Similarity=0.571 Sum_probs=34.0
Q ss_pred ccccCCCEEecCCeEEEE-EecCeeeeEe--cCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 230 AFVKVGDKVQKGQVVCII-EAMKLMNEIE--ADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~I-EamK~~~eI~--Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
+.+++||.|..||+++.+ |+.-..+.|- ..+.|+|+.|. .+|+ ....+.++++
T Consensus 119 p~~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i~-~~g~-~~~~~~v~~~ 174 (578)
T TIGR01043 119 PTVKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEIA-EEGD-YTVEDTIAVV 174 (578)
T ss_pred cccccCccccCCceEEEEecccceeeeeecCCCCcceEEEec-cCCC-ceeeeeEEEE
Confidence 358999999999999987 5544445443 33579998774 3454 2223444443
No 220
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=45.65 E-value=34 Score=35.38 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=31.9
Q ss_pred EEecCeeeeEecCCCeEEEE------------------------EEcCCCCccCCCCeEEEEc
Q 023188 247 IEAMKLMNEIEADQSGTIAE------------------------ILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 247 IEamK~~~eI~Ap~sGvV~~------------------------Ilve~Gd~V~~G~~L~~Ie 285 (286)
+..-+...+|.|+.+|.|.. ++++.||.|+.|++|++|.
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~ 470 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIY 470 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEE
Confidence 44566778888888888875 4678999999999999984
No 221
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=45.01 E-value=15 Score=37.18 Aligned_cols=41 Identities=29% Similarity=0.255 Sum_probs=30.4
Q ss_pred CCccCCcceEEEccC------------------------CCCCCccccCCCEEecCCeEEEEEec
Q 023188 210 PPLKCPMAGTFYRCP------------------------APGEPAFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p------------------------~~~~~~~VkvGd~V~~Gq~L~~IEam 250 (286)
..|+|+..|++.... .-|...+++.||.|++||+|+.|=++
T Consensus 336 ~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~~V~~g~~l~~i~~~ 400 (434)
T PRK06078 336 IEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGDSVKKGESLATIYAN 400 (434)
T ss_pred EEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcCEeCCCCeEEEEeCC
Confidence 457888888876422 22333789999999999999998644
No 222
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=44.90 E-value=28 Score=39.92 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=19.9
Q ss_pred CCCCCccccCCCEEecCCeEEEE
Q 023188 225 APGEPAFVKVGDKVQKGQVVCII 247 (286)
Q Consensus 225 ~~~~~~~VkvGd~V~~Gq~L~~I 247 (286)
++++-.++..||.|++||+|+.+
T Consensus 947 s~ga~~~~~~g~~v~~Gd~L~~l 969 (1331)
T PRK02597 947 SPGAVLHVRDGDLVQRGDNLALL 969 (1331)
T ss_pred CCCCEEEecCCCEecCCCeEEEE
Confidence 36777889999999999999976
No 223
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=44.77 E-value=32 Score=42.29 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.4
Q ss_pred CCCCccccCCCEEecCCeEEEE
Q 023188 226 PGEPAFVKVGDKVQKGQVVCII 247 (286)
Q Consensus 226 ~~~~~~VkvGd~V~~Gq~L~~I 247 (286)
++.-.+|+.||.|+.||+|+.+
T Consensus 2612 ~~~~l~v~~g~~v~~gdilak~ 2633 (2890)
T PRK09603 2612 PKTSIAISDGSSVEQAEVLAKI 2633 (2890)
T ss_pred CCcEEEecCCCEecccceEeec
Confidence 3444789999999999999976
No 224
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=43.28 E-value=29 Score=34.18 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=27.0
Q ss_pred cCeeeeEecCCCeEEEEEEc-------CCCCccCCCCeEEE
Q 023188 250 MKLMNEIEADQSGTIAEILA-------EDGKSVSVDTPLLV 283 (286)
Q Consensus 250 mK~~~eI~Ap~sGvV~~Ilv-------e~Gd~V~~G~~L~~ 283 (286)
+..--.|.|..+|+|+++.+ +.||.|..||+|..
T Consensus 186 ~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 186 KEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 44557899999999999865 56677999999873
No 225
>PRK02259 aspartoacylase; Provisional
Probab=42.74 E-value=17 Score=34.28 Aligned_cols=61 Identities=7% Similarity=-0.019 Sum_probs=43.2
Q ss_pred CccCC---cceEEEccCCCCCCccccCC--CEEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023188 211 PLKCP---MAGTFYRCPAPGEPAFVKVG--DKVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLL 282 (286)
Q Consensus 211 ~I~AP---~~G~~~~~p~~~~~~~VkvG--d~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~ 282 (286)
..+++ ..|.|. +.|+.| +.|++||+|+.. .+.-...+.++.+|.. |.+++...++.|..++
T Consensus 216 ~pr~~~g~~~g~vh--------p~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~p--vfine~ay~~kg~a~~ 281 (288)
T PRK02259 216 YPRDENGQIAAMIH--------PQLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYP--VFINEAAYYEKGIAMS 281 (288)
T ss_pred CCCCCCCCEeEEec--------hhhcCCCccccCCCCcceec-CCCCEEEecCCCCEEe--EEecHHHHHhhhhHhh
Confidence 45666 556665 467778 569999999988 6677778888888877 4555666666666554
No 226
>PRK11637 AmiB activator; Provisional
Probab=42.66 E-value=38 Score=33.56 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=13.2
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
..|++||.|.+||+|+.+-.
T Consensus 381 ~~v~~G~~V~~G~~ig~~g~ 400 (428)
T PRK11637 381 ALVSVGAQVRAGQPIALVGS 400 (428)
T ss_pred CCCCCcCEECCCCeEEeecC
Confidence 44677777777777776644
No 227
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=42.57 E-value=11 Score=25.16 Aligned_cols=14 Identities=36% Similarity=0.600 Sum_probs=12.2
Q ss_pred CCcccccCCCcccc
Q 023188 1 MASIWIPCPKISWV 14 (286)
Q Consensus 1 mas~~~~~~~~~~~ 14 (286)
||++.|-||.|-..
T Consensus 1 Ma~i~v~CP~C~s~ 14 (36)
T PF03811_consen 1 MAKIDVHCPRCQST 14 (36)
T ss_pred CCcEeeeCCCCCCC
Confidence 99999999999553
No 228
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=41.80 E-value=17 Score=37.36 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=30.6
Q ss_pred CCccCCcceEEEccC-----------------CCCCCccccCCCEEecCCeEEEEEe
Q 023188 210 PPLKCPMAGTFYRCP-----------------APGEPAFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p-----------------~~~~~~~VkvGd~V~~Gq~L~~IEa 249 (286)
..|+|+..|++.... .-|...+++.||.|++||+|+.|=+
T Consensus 414 ~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 414 ADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred EEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 467888888877532 2233488999999999999999854
No 229
>PRK09603 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Reviewed
Probab=41.49 E-value=38 Score=41.63 Aligned_cols=18 Identities=39% Similarity=0.387 Sum_probs=15.4
Q ss_pred EEcCCCCccCCCCeEEEE
Q 023188 267 ILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 267 Ilve~Gd~V~~G~~L~~I 284 (286)
+.|++|+.|..|++|+.+
T Consensus 2616 l~v~~g~~v~~gdilak~ 2633 (2890)
T PRK09603 2616 IAISDGSSVEQAEVLAKI 2633 (2890)
T ss_pred EEecCCCEecccceEeec
Confidence 567889999999999876
No 230
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=41.42 E-value=26 Score=27.52 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=22.6
Q ss_pred CCCeEEEEEEcCC-CCccCCCCeEEEEc
Q 023188 259 DQSGTIAEILAED-GKSVSVDTPLLVIV 285 (286)
Q Consensus 259 p~sGvV~~Ilve~-Gd~V~~G~~L~~Ie 285 (286)
..-|.|..+.... |+.|..|++|+.|+
T Consensus 26 ~~lG~i~~i~~~~~G~~v~~g~~l~~iE 53 (96)
T cd06848 26 DLLGDIVFVELPEVGTEVKKGDPFGSVE 53 (96)
T ss_pred hhCCCEEEEEecCCCCEEeCCCEEEEEE
Confidence 3468888877655 99999999999986
No 231
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=41.05 E-value=31 Score=33.65 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=31.2
Q ss_pred CCCccCCcceEEEccCC-C-C--------------------CCccccCCCEEecCCeEEEEEe
Q 023188 209 HPPLKCPMAGTFYRCPA-P-G--------------------EPAFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p~-~-~--------------------~~~~VkvGd~V~~Gq~L~~IEa 249 (286)
...|+|+..|++...-. . + ...+|++||.|++||.|+.+-.
T Consensus 229 G~pV~Aaa~G~Vv~ag~~~~gyGn~ViI~H~~g~~S~Yahl~~i~Vk~Gq~V~~Gq~Ig~~G~ 291 (319)
T PRK10871 229 GQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGS 291 (319)
T ss_pred CCeEEeccCeEEEEEeeccCCcceEEEEEeCCceEEEeeCCCccccCCcCEECCCCeEEeEcC
Confidence 34699999999876532 1 1 2267999999999999998865
No 232
>PRK04350 thymidine phosphorylase; Provisional
Probab=40.85 E-value=19 Score=37.10 Aligned_cols=41 Identities=34% Similarity=0.447 Sum_probs=31.5
Q ss_pred CCCccCCcceEEEccC-----------------CCCCCccccCCCEEecCCeEEEEEe
Q 023188 209 HPPLKCPMAGTFYRCP-----------------APGEPAFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 209 ~~~I~AP~~G~~~~~p-----------------~~~~~~~VkvGd~V~~Gq~L~~IEa 249 (286)
...|+||..|++.... .-|...+++.||.|++||+|+.|=+
T Consensus 405 ~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 405 THDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred EEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 3468888888887532 2334488999999999999999864
No 233
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=40.63 E-value=44 Score=34.00 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=29.0
Q ss_pred ecCeeeeEecCCCeEEE-------------------------------EEEcCCCCccCCCCeEEEEc
Q 023188 249 AMKLMNEIEADQSGTIA-------------------------------EILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 249 amK~~~eI~Ap~sGvV~-------------------------------~Ilve~Gd~V~~G~~L~~Ie 285 (286)
..+...+|.|+.+|.|. +++++.|+.|..|++|++|.
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~~V~~Gd~l~~i~ 403 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGDRVDAGEPLATLH 403 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcCEECCCCeEEEEe
Confidence 34566777888888774 45778899999999999974
No 234
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=40.07 E-value=30 Score=34.20 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=25.0
Q ss_pred eeeEecCCCeEEEEEEc-------CCCCccCCCCeEEE
Q 023188 253 MNEIEADQSGTIAEILA-------EDGKSVSVDTPLLV 283 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilv-------e~Gd~V~~G~~L~~ 283 (286)
-..|.|..+|+|+++.+ +.||.|..||.|..
T Consensus 186 P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIs 223 (382)
T TIGR02876 186 PRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLIS 223 (382)
T ss_pred CccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEE
Confidence 45789999999999865 55677999999873
No 235
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=40.05 E-value=37 Score=39.17 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=31.3
Q ss_pred CCccccCCCEEecCCeEEEEEec--------CeeeeEecCCCeEEE
Q 023188 228 EPAFVKVGDKVQKGQVVCIIEAM--------KLMNEIEADQSGTIA 265 (286)
Q Consensus 228 ~~~~VkvGd~V~~Gq~L~~IEam--------K~~~eI~Ap~sGvV~ 265 (286)
.-.+|+.||.|++||+|+++... |...+|.++.+|.|.
T Consensus 404 s~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~ 449 (1364)
T CHL00117 404 SLLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMH 449 (1364)
T ss_pred CEEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEE
Confidence 33789999999999999999863 334799999999864
No 236
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=39.19 E-value=26 Score=33.22 Aligned_cols=48 Identities=15% Similarity=0.054 Sum_probs=35.6
Q ss_pred CCEEecCCeEEEEEecCeeeeEecCCCeEE-EEEEcCCCCccCCCCeEEEE
Q 023188 235 GDKVQKGQVVCIIEAMKLMNEIEADQSGTI-AEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 235 Gd~V~~Gq~L~~IEamK~~~eI~Ap~sGvV-~~Ilve~Gd~V~~G~~L~~I 284 (286)
|..|++||.++.++=. -...+.-+.+ ++ -...+..|+.|..|+.|..+
T Consensus 237 ~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~kV~~Ge~ig~~ 285 (288)
T PRK00044 237 AITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGSVVRMGQPLAHI 285 (288)
T ss_pred CCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCCEEEcChhhcCc
Confidence 7799999999999874 4444555543 43 23457899999999999765
No 237
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=39.06 E-value=21 Score=36.91 Aligned_cols=40 Identities=33% Similarity=0.415 Sum_probs=30.4
Q ss_pred CCccCCcceEEEccC-----------------CCCCCccccCCCEEecCCeEEEEEe
Q 023188 210 PPLKCPMAGTFYRCP-----------------APGEPAFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p-----------------~~~~~~~VkvGd~V~~Gq~L~~IEa 249 (286)
..|+||..|++.... .-|...+++.||.|++||+|+.|=+
T Consensus 415 ~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 415 YTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred EEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 467888888876432 2234488999999999999999864
No 238
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=38.89 E-value=81 Score=36.54 Aligned_cols=74 Identities=14% Similarity=0.225 Sum_probs=42.6
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCE--EecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEEcC
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDK--VQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~--V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Iep 286 (286)
..|+||..|++.-.........-.-|+. +...+.+.+|+.......+.-|... .++|++|+.|+.||.|+++.|
T Consensus 350 ~~i~a~~~G~i~~~~~~~~~~rt~~g~~~~~~~~~~~~~i~~~~~~~~~~ip~gs---~l~v~~g~~V~~~q~iae~~~ 425 (1364)
T CHL00117 350 EQVRAPFNGKIKFNEDLVHPTRTRHGHPAFLCKIDLYVTIESEDIIHNVNIPPKS---LLLVQNDQYVESEQVIAEIRA 425 (1364)
T ss_pred eeEEeccCeEEEEecceeeEEeCcCCEEEEEEecceEEEEeCCCeEEEEEeCCCC---EEEEeCcCEEcCCCEEEEECC
Confidence 4799999998865321111111111221 1222333344444444455555444 368999999999999999865
No 239
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=37.93 E-value=54 Score=32.96 Aligned_cols=38 Identities=29% Similarity=0.473 Sum_probs=28.9
Q ss_pred EecCeeeeEecCCCeEEEE-------------------------------EEcCCCCccCCCCeEEEEc
Q 023188 248 EAMKLMNEIEADQSGTIAE-------------------------------ILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 248 EamK~~~eI~Ap~sGvV~~-------------------------------Ilve~Gd~V~~G~~L~~Ie 285 (286)
-.-+...+|.|+.+|.|.. ++.+.|+.|+.|++|++|.
T Consensus 328 ~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~~V~~g~~l~~i~ 396 (405)
T TIGR02644 328 PKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGDRVKKGDPLATLY 396 (405)
T ss_pred CCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcCEeCCCCeEEEEe
Confidence 3455666777777777663 5678899999999999984
No 240
>PRK06149 hypothetical protein; Provisional
Probab=37.42 E-value=23 Score=38.99 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=30.6
Q ss_pred CCCCccCCcceEEEccCC-----CCC---------CccccCCCEEecCCeEEEEEe
Q 023188 208 SHPPLKCPMAGTFYRCPA-----PGE---------PAFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~-----~~~---------~~~VkvGd~V~~Gq~L~~IEa 249 (286)
....|.||+.|++...-. .+. ...+++||.|++||.||.+-.
T Consensus 441 ~gt~v~Ap~~G~v~~~~~~~~~l~~~~~f~~l~g~~~~~~~g~~v~~G~~~~~~g~ 496 (972)
T PRK06149 441 AGTAVAAPFAGTVVRDGQGHLTLRGDALELHLDGVEPAVEDGAAVRAGDPLGSVAG 496 (972)
T ss_pred CCCeEECccCcEEEEecCCceEecCCCcEEEEecccccCCCCCeecCCchheecCC
Confidence 446799999999887422 011 122889999999999998875
No 241
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=36.75 E-value=26 Score=32.79 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=30.7
Q ss_pred ccC-CcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCeeee
Q 023188 212 LKC-PMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLMNE 255 (286)
Q Consensus 212 I~A-P~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~~e 255 (286)
|++ -|-|.+|- ..|+|.+|..|++=|+.|.||.+|...+
T Consensus 168 vrsi~~~gl~wg-----asklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 168 VRSIEMDGLVWG-----ASKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred HHHhhhccceec-----cccccccccceeeEEEEEEEEcCccccc
Confidence 444 35677764 3489999999999999999999997653
No 242
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=36.70 E-value=75 Score=33.36 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=33.4
Q ss_pred ccccCCCEEecCCeEEEEEecCeeeeEe--cCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 230 AFVKVGDKVQKGQVVCIIEAMKLMNEIE--ADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEamK~~~eI~--Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
+.|++||+|..||+|+.+.-.-+++-|- -+..|.+..+.+.+|+. ...+.++++
T Consensus 120 P~~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~y-tv~d~ia~v 175 (588)
T COG1155 120 PAVKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGEY-TVEDVIATV 175 (588)
T ss_pred cccccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCCc-eeeEEEEEE
Confidence 5579999999999999875444223332 33345555666666753 334555555
No 243
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=35.34 E-value=1.1e+02 Score=27.24 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=39.3
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCCE--------EecCCe-EEEEEecC--ee-eeEecCCCeEEEEEEcCCCCcc
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGDK--------VQKGQV-VCIIEAMK--LM-NEIEADQSGTIAEILAEDGKSV 275 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd~--------V~~Gq~-L~~IEamK--~~-~eI~Ap~sGvV~~Ilve~Gd~V 275 (286)
+.+.+++|+.|++... ....|+. -..++. ++.+|+.. +. ..|-+-..+.| ...+++|+.+
T Consensus 71 DyHr~haP~~G~v~~~-------~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~G~v~~v~v~~~~~~~i-~~~~~~g~~v 142 (189)
T TIGR00164 71 DVHVNRAPAGGKVTYV-------KHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVVQIAGFVARRI-VCYVKEGEKV 142 (189)
T ss_pred ccceEEcccccEEEEE-------EEECCeEeecccCcccccceeEEEEEEcCCCCEEEEEECeEEccEE-EEecCCCCEE
Confidence 5567899999988762 2333331 123333 35666642 22 22222222333 2356789999
Q ss_pred CCCCeEEEEc
Q 023188 276 SVDTPLLVIV 285 (286)
Q Consensus 276 ~~G~~L~~Ie 285 (286)
..|+.+..++
T Consensus 143 ~kGeeiG~f~ 152 (189)
T TIGR00164 143 SRGQRIGMIR 152 (189)
T ss_pred ecCcEEEEEe
Confidence 9999887664
No 244
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=33.72 E-value=67 Score=32.70 Aligned_cols=19 Identities=32% Similarity=0.321 Sum_probs=16.4
Q ss_pred EEcCCCCccCCCCeEEEEc
Q 023188 267 ILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 267 Ilve~Gd~V~~G~~L~~Ie 285 (286)
++++.||.|+.|++|++|.
T Consensus 384 l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 384 DLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred eccCCcCEeCCCCeEEEEE
Confidence 5678899999999999874
No 245
>PRK11637 AmiB activator; Provisional
Probab=33.65 E-value=38 Score=33.53 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=38.1
Q ss_pred CCCCccCCcceEEEccCCCCCCccccCCC--EEecCCeEEEEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 208 SHPPLKCPMAGTFYRCPAPGEPAFVKVGD--KVQKGQVVCIIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 208 ~~~~I~AP~~G~~~~~p~~~~~~~VkvGd--~V~~Gq~L~~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
....|+|+..|+|... .|+-.-|. .|.-|+-++.+=+. ...+.|..|+.|..|++|..+
T Consensus 338 ~g~~v~A~~~G~V~~~-----~~~~~~G~~vii~hg~g~~t~Y~~-------------~~~~~v~~G~~V~~G~~ig~~ 398 (428)
T PRK11637 338 EGTEVKAIADGRVLLA-----DWLQGYGLVVVVEHGKGDMSLYGY-------------NQSALVSVGAQVRAGQPIALV 398 (428)
T ss_pred CCCeEEecCCeEEEEe-----eccCCcccEEEEEeCCCcEEEccC-------------CCcCCCCCcCEECCCCeEEee
Confidence 3457999999998763 23333343 34456655554211 224678999999999999876
No 246
>PRK11649 putative peptidase; Provisional
Probab=33.54 E-value=38 Score=34.23 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=12.5
Q ss_pred cccCCCEEecCCeEEEEE
Q 023188 231 FVKVGDKVQKGQVVCIIE 248 (286)
Q Consensus 231 ~VkvGd~V~~Gq~L~~IE 248 (286)
.|+.||.|++||+|+.+-
T Consensus 366 ~v~~Gq~V~~Gq~IG~vG 383 (439)
T PRK11649 366 LVKPGQKVKRGDRIALSG 383 (439)
T ss_pred cCCCcCEECCCCeEEEEc
Confidence 467777777777777653
No 247
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=33.10 E-value=1.2e+02 Score=27.17 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=41.3
Q ss_pred CCCCCccCCcceEEEcc-CCCCCCccccCCCEEecCC-eEEEEEecC---e-eeeEecCCCeEEEEEEcCCCCccCCCCe
Q 023188 207 SSHPPLKCPMAGTFYRC-PAPGEPAFVKVGDKVQKGQ-VVCIIEAMK---L-MNEIEADQSGTIAEILAEDGKSVSVDTP 280 (286)
Q Consensus 207 ~~~~~I~AP~~G~~~~~-p~~~~~~~VkvGd~V~~Gq-~L~~IEamK---~-~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~ 280 (286)
.+.+.++||+.|++... +-+|.-+-+.....-..++ .+..+|+.+ + +..|-+-..+.|. ..++.|+.+..|+.
T Consensus 89 ~d~H~~~aP~~G~V~~~~~~~G~~~~~~~~~~~~~NeR~~~~~~t~~~g~~~~~~i~~~~~r~I~-~~~~~g~~v~kGe~ 167 (206)
T PRK05305 89 FNVHVNRAPVSGTVTKVEYRPGKFLNAFLDKASEENERNAVVIETADGGEIGVVQIAGLIARRIV-CYVKEGDEVERGER 167 (206)
T ss_pred ccCCEEEeCccCEEEEEEEECCeEEecCCCcccccCceEEEEEEeCCCCEEEEEEeCeEEccEEE-EeCCCCCEEccCcE
Confidence 35567899999998762 1122111111111112233 344666642 2 2233333344443 25688999999998
Q ss_pred EEEEc
Q 023188 281 LLVIV 285 (286)
Q Consensus 281 L~~Ie 285 (286)
+..++
T Consensus 168 ~G~f~ 172 (206)
T PRK05305 168 FGLIR 172 (206)
T ss_pred EeEEe
Confidence 87764
No 248
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=32.25 E-value=33 Score=30.79 Aligned_cols=19 Identities=42% Similarity=0.641 Sum_probs=17.3
Q ss_pred ccccCCCEEecCCeEEEEE
Q 023188 230 AFVKVGDKVQKGQVVCIIE 248 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IE 248 (286)
..|++||.|++||+|+.+-
T Consensus 216 ~~V~~G~~V~~G~~Ig~~G 234 (277)
T COG0739 216 ILVKEGQKVKAGQVIGYVG 234 (277)
T ss_pred hccCCCCEeccCCEEEEec
Confidence 6789999999999999884
No 249
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=31.98 E-value=24 Score=37.78 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=25.7
Q ss_pred CccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecC
Q 023188 211 PLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMK 251 (286)
Q Consensus 211 ~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK 251 (286)
.|.|-|+|.+.. -+++||.|++||.|+.-.=..
T Consensus 887 aiGAmMVGSi~l--------t~kEgd~V~~gdELGYFkFGG 919 (975)
T KOG2419|consen 887 AIGAMMVGSILL--------TRKEGDHVKKGDELGYFKFGG 919 (975)
T ss_pred eecceeeeeEEE--------EeecCcccccccccceEeeCC
Confidence 477888887765 689999999999887665443
No 250
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.89 E-value=86 Score=27.43 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=23.5
Q ss_pred CCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 259 DQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 259 p~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
|+.|-++...+.-|+.|..|++++-+
T Consensus 97 PvEGYvVtpIaDvG~RvrkGd~~AAv 122 (161)
T COG4072 97 PVEGYVVTPIADVGNRVRKGDPFAAV 122 (161)
T ss_pred ecCcEEEEEeecccchhcCCCceeEE
Confidence 67899999999999999999999876
No 251
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=31.35 E-value=38 Score=31.87 Aligned_cols=21 Identities=43% Similarity=0.632 Sum_probs=19.5
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
|+++.|+.|++||+|+.|+..
T Consensus 62 ~~~~dG~~v~~g~~i~~i~G~ 82 (268)
T cd01572 62 WLVKDGDRVEPGQVLATVEGP 82 (268)
T ss_pred EEeCCCCEecCCCEEEEEEEC
Confidence 899999999999999999863
No 252
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=31.17 E-value=84 Score=25.41 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=19.2
Q ss_pred CeEEEEEEcCCCCccCCCCeEEEE
Q 023188 261 SGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 261 sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
.|.-.+.+|+.||.|..||.|++.
T Consensus 38 ~G~~~~p~V~~Gd~V~~GQ~Ia~~ 61 (101)
T PF13375_consen 38 IGAPAEPVVKVGDKVKKGQLIAEA 61 (101)
T ss_pred CCCcceEEEcCCCEEcCCCEEEec
Confidence 444557888999999999999864
No 253
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=30.05 E-value=41 Score=31.97 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=19.4
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
|+++.|+.|++||+|+.++..
T Consensus 68 ~~~~dG~~v~~g~~i~~~~G~ 88 (277)
T PRK08072 68 LHKKDGDLVKKGEIIATVQGP 88 (277)
T ss_pred EEeCCCCEEcCCCEEEEEEEC
Confidence 899999999999999999863
No 254
>PRK13380 glycine cleavage system protein H; Provisional
Probab=29.99 E-value=48 Score=28.50 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=27.8
Q ss_pred eeeEecCCCeEEEEEEcC-CCCccCCCCeEEEEc
Q 023188 253 MNEIEADQSGTIAEILAE-DGKSVSVDTPLLVIV 285 (286)
Q Consensus 253 ~~eI~Ap~sGvV~~Ilve-~Gd~V~~G~~L~~Ie 285 (286)
+.......-|.|..+.+. .|+.|..|++|+.|+
T Consensus 35 itd~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IE 68 (144)
T PRK13380 35 ITDYAQTMAGDVVFVRLKELGKKVEKGKPVATLE 68 (144)
T ss_pred cCHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEE
Confidence 455566778999999986 899999999999986
No 255
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=29.70 E-value=64 Score=36.90 Aligned_cols=23 Identities=30% Similarity=0.650 Sum_probs=19.8
Q ss_pred CCCCCccccCCCEEecCCeEEEE
Q 023188 225 APGEPAFVKVGDKVQKGQVVCII 247 (286)
Q Consensus 225 ~~~~~~~VkvGd~V~~Gq~L~~I 247 (286)
++++-.++..||.|++||+|+.+
T Consensus 945 s~ga~~~~~~g~~v~~Gd~L~~l 967 (1227)
T TIGR02388 945 SPGAVLHIEDGDLVQRGDNLALL 967 (1227)
T ss_pred CCCCEEEecCCCEecCCCEEEEE
Confidence 36677889999999999999976
No 256
>PF11475 VP_N-CPKC: Virion protein N terminal domain ; InterPro: IPR021573 This is the N-terminal domain of a family of virion proteins which contains a zinc finger domain. Currently no function is known. ; PDB: 2BAI_A.
Probab=27.89 E-value=8 Score=25.04 Aligned_cols=10 Identities=40% Similarity=0.733 Sum_probs=6.9
Q ss_pred cccCCCcccc
Q 023188 5 WIPCPKISWV 14 (286)
Q Consensus 5 ~~~~~~~~~~ 14 (286)
-.-||||+..
T Consensus 16 f~ecpkcsal 25 (32)
T PF11475_consen 16 FEECPKCSAL 25 (32)
T ss_dssp GGGHHHHH-S
T ss_pred cccCcchhHh
Confidence 4679999873
No 257
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=27.17 E-value=47 Score=31.77 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=18.9
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
|+++.|+.|++||+|+.++.
T Consensus 65 ~~~~dG~~v~~G~~i~~~~G 84 (284)
T PRK06096 65 DAVSDGSQANAGQRLISAQG 84 (284)
T ss_pred EEeCCCCEeCCCCEEEEEEe
Confidence 89999999999999999976
No 258
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.69 E-value=50 Score=31.39 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=19.5
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
|+++.|+.|++|++|+.++..
T Consensus 70 ~~~~dG~~v~~g~~i~~i~G~ 90 (277)
T PRK05742 70 WQVADGERVSANQVLFHLEGP 90 (277)
T ss_pred EEeCCCCEEcCCCEEEEEEEc
Confidence 899999999999999999863
No 259
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.49 E-value=50 Score=31.60 Aligned_cols=21 Identities=14% Similarity=0.373 Sum_probs=19.3
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
|+++.|+.|++||+|+.++..
T Consensus 69 ~~~~dG~~v~~G~~i~~~~G~ 89 (281)
T PRK06543 69 LAVADGERFEAGDILATVTGP 89 (281)
T ss_pred EEeCCCCEecCCCEEEEEEec
Confidence 899999999999999999863
No 260
>PRK10718 RpoE-regulated lipoprotein; Provisional
Probab=26.18 E-value=1.5e+02 Score=27.08 Aligned_cols=44 Identities=30% Similarity=0.378 Sum_probs=36.3
Q ss_pred cccCCCEEecCCeEEEEEecC---eeeeEecCCCeEEEEEEcCCCCcc
Q 023188 231 FVKVGDKVQKGQVVCIIEAMK---LMNEIEADQSGTIAEILAEDGKSV 275 (286)
Q Consensus 231 ~VkvGd~V~~Gq~L~~IEamK---~~~eI~Ap~sGvV~~Ilve~Gd~V 275 (286)
++..|..-+.|+++-+.|+|| +.++|.-+ .|+|.+|.|.+++..
T Consensus 69 ~lrsGm~t~~G~iv~~~qa~~~d~v~lvi~G~-~G~V~rI~V~d~~i~ 115 (191)
T PRK10718 69 RLRSGMKTANGNVVRFFQAMKGDQVAMVINGQ-QGTVSRIDVLDSDIP 115 (191)
T ss_pred eEeccccCCCCCEEEeeeeecCCceEEEEECC-CCcEEEEEEeCCCCC
Confidence 357899999999999888876 55666666 999999999999875
No 261
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=25.49 E-value=25 Score=29.61 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=18.3
Q ss_pred cce-EEEccCCCCCCccccCCCEEecCCeEE
Q 023188 216 MAG-TFYRCPAPGEPAFVKVGDKVQKGQVVC 245 (286)
Q Consensus 216 ~~G-~~~~~p~~~~~~~VkvGd~V~~Gq~L~ 245 (286)
..| .+...-++|.+..|++||.|+.||.|-
T Consensus 31 ~dG~~v~~~IP~GpeLiV~eG~~V~~dqpLT 61 (118)
T PF01333_consen 31 SDGETVVETIPAGPELIVSEGQSVKADQPLT 61 (118)
T ss_dssp TTSEEEEEEEESSS-BS--TT-EETTT-BSB
T ss_pred CCCCEEEEecCCCCeEEEcCCCEEecCCccc
Confidence 344 455555678889999999999999873
No 262
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=25.08 E-value=1.7e+02 Score=20.83 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=20.3
Q ss_pred HHHHHHHHhhCCCcEEEEEeCC--EEEEEEe
Q 023188 120 VSDLVKLVDSRDIMELQMKQSD--CELIVRK 148 (286)
Q Consensus 120 I~eLiklvd~s~I~ELelk~~d--~~L~Irk 148 (286)
.++|.++++..+..-+.++..+ ++|.|+|
T Consensus 39 ~~~i~~~~~~~g~~~~~~~~~~~~~~i~i~k 69 (69)
T cd00291 39 VEDIPAWAKETGHEVLEVEEEGGVYRILIRK 69 (69)
T ss_pred HHHHHHHHHHcCCEEEEEEEeCCEEEEEEEC
Confidence 5667777888888777666544 7777764
No 263
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=24.69 E-value=58 Score=30.53 Aligned_cols=21 Identities=43% Similarity=0.570 Sum_probs=19.5
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
|++++|+.|++|++|+.|+..
T Consensus 61 ~~~~dG~~v~~g~~i~~i~G~ 81 (269)
T cd01568 61 WLVKDGDRVEAGQVLLEVEGP 81 (269)
T ss_pred EEeCCCCEecCCCEEEEEEEc
Confidence 799999999999999999864
No 264
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.48 E-value=57 Score=31.19 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=19.2
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
|+++.|+.|++||+|+.++..
T Consensus 76 ~~~~dG~~v~~g~~i~~~~G~ 96 (288)
T PRK07428 76 PLVAEGAACESGQVVAEIEGP 96 (288)
T ss_pred EEcCCCCEecCCCEEEEEEEc
Confidence 789999999999999999863
No 265
>COG0739 NlpD Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]
Probab=24.24 E-value=1.5e+02 Score=26.51 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=26.2
Q ss_pred EEEecCeeeeEecCCCeEEEEEEcCCCCccCCCCeEEEE
Q 023188 246 IIEAMKLMNEIEADQSGTIAEILAEDGKSVSVDTPLLVI 284 (286)
Q Consensus 246 ~IEamK~~~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~I 284 (286)
+|.-..-...+.+..+ +++|+.|+.|..|+.|..+
T Consensus 199 ~i~H~~g~~t~Y~Hl~----~~~V~~G~~V~~G~~Ig~~ 233 (277)
T COG0739 199 IIKHGDGYVTVYAHLS----SILVKEGQKVKAGQVIGYV 233 (277)
T ss_pred EEEcCCceEeeehhhh----hhccCCCCEeccCCEEEEe
Confidence 3454555555666655 7899999999999999875
No 266
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=24.19 E-value=67 Score=32.69 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=18.0
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
.+++.||.|++||+|+.|=+
T Consensus 381 l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 381 LHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred EEecCCCeeccCCeEEEEec
Confidence 46899999999999999866
No 267
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.85 E-value=60 Score=30.80 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.3
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
|+++.|+.|++||+|+.++-.
T Consensus 62 ~~~~dG~~v~~g~~i~~i~G~ 82 (273)
T PRK05848 62 FTIKDGERFKKGDILMEIEGD 82 (273)
T ss_pred EEcCCCCEecCCCEEEEEEEC
Confidence 799999999999999999863
No 268
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.81 E-value=60 Score=31.33 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=18.8
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
|+++.|+.|++|++|+.++.
T Consensus 86 ~~~~dG~~v~~G~~i~~~~G 105 (294)
T PRK06978 86 WRYREGDRMTADSTVCELEG 105 (294)
T ss_pred EEcCCCCEeCCCCEEEEEEe
Confidence 89999999999999999976
No 269
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=23.71 E-value=95 Score=35.58 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=29.8
Q ss_pred ccccCCCEEecCCeEEEEEec-------CeeeeEecCCCeEE
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM-------KLMNEIEADQSGTI 264 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam-------K~~~eI~Ap~sGvV 264 (286)
.||+.|+.|+++|+|+++-+. |....|.++.+|.|
T Consensus 405 l~v~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~ 446 (1227)
T TIGR02388 405 LFVEDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEV 446 (1227)
T ss_pred EEEECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceE
Confidence 789999999999999999874 44567889988866
No 270
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=23.41 E-value=62 Score=31.44 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=18.9
Q ss_pred ccccCCCEEecCCeEEEEEe
Q 023188 230 AFVKVGDKVQKGQVVCIIEA 249 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa 249 (286)
|+++.|+.|++|++|+.++.
T Consensus 82 ~~~~dG~~v~~G~~i~~v~G 101 (308)
T PLN02716 82 WAAIDGDFVHKGLKFGKVTG 101 (308)
T ss_pred EEeCCCCEecCCCEEEEEEE
Confidence 89999999999999999976
No 271
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=23.19 E-value=1.5e+02 Score=36.89 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=43.7
Q ss_pred ccccCCCEEecCCeEEEEEe-----------cCe------------eeeEecCCCeEEE---------------------
Q 023188 230 AFVKVGDKVQKGQVVCIIEA-----------MKL------------MNEIEADQSGTIA--------------------- 265 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEa-----------mK~------------~~eI~Ap~sGvV~--------------------- 265 (286)
|...-|..|+-|+.|++|-+ |.. ...|+++.+|+|.
T Consensus 2322 ~~La~~~~V~iGeaVGiIAAQSIGEPGTQLTMRTFHtGGvas~~~~~~~i~~~~~G~v~~~~~~~v~~~~g~~iv~sr~~ 2401 (2836)
T PRK14844 2322 RDLATGKIVSIGEAVGVIAAQSVGEPGTQLTMRTFHIGGVMTRGVESSNIIASINAKIKLNNSNIIIDKNGNKIVISRSC 2401 (2836)
T ss_pred ccccCCCcccccccceeeeecccCCCcceeeeeheeeccccccccccceeEeccCceEEeccceeEEcCCCcEEEEeccc
Confidence 66678888888888888866 211 2357788888764
Q ss_pred ---------------------EEEcCCCCccCCCCeEEEEcC
Q 023188 266 ---------------------EILAEDGKSVSVDTPLLVIVP 286 (286)
Q Consensus 266 ---------------------~Ilve~Gd~V~~G~~L~~Iep 286 (286)
.++|++|+.|+.|+.|++..|
T Consensus 2402 ~~~i~d~~g~~~~~~~i~yga~l~v~~g~~V~~g~~la~wdp 2443 (2836)
T PRK14844 2402 EVVLIDSLGSEKLKHSVPYGAKLYVDEGGSVKIGDKVAEWDP 2443 (2836)
T ss_pred EEEEEecCCcEEEEEecccccEEEecCCCEecCCCEEEEEcC
Confidence 357899999999999998765
No 272
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=23.09 E-value=63 Score=30.42 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=19.4
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
|++++|+.|++||+|+.|+..
T Consensus 60 ~~~~dG~~v~~g~~i~~i~G~ 80 (272)
T cd01573 60 LAAASGSRVAAGAVLLEAEGP 80 (272)
T ss_pred EEcCCCCEecCCCEEEEEEEc
Confidence 789999999999999999864
No 273
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.97 E-value=64 Score=30.96 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=19.3
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
|+++.|+.|++||+|+.++..
T Consensus 80 ~~~~dG~~v~~g~~i~~i~G~ 100 (289)
T PRK07896 80 DRVEDGARVPPGQALLTVTAP 100 (289)
T ss_pred EEcCCCCEecCCCEEEEEEEC
Confidence 789999999999999999863
No 274
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.83 E-value=65 Score=30.80 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.3
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
|+++.|+.|++||+|+.++..
T Consensus 74 ~~~~dG~~v~~g~~i~~i~G~ 94 (281)
T PRK06106 74 RHLPDGAAVAPGDVIATISGP 94 (281)
T ss_pred EEeCCCCEEcCCCEEEEEEEC
Confidence 899999999999999999863
No 275
>PF06572 DUF1131: Protein of unknown function (DUF1131); InterPro: IPR010938 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 2QZB_B.
Probab=22.81 E-value=1.1e+02 Score=27.47 Aligned_cols=44 Identities=27% Similarity=0.415 Sum_probs=31.5
Q ss_pred ccCCCEEecCCeEEEEEecC---eeeeEecCCCeEEEEEEcCCCCcc
Q 023188 232 VKVGDKVQKGQVVCIIEAMK---LMNEIEADQSGTIAEILAEDGKSV 275 (286)
Q Consensus 232 VkvGd~V~~Gq~L~~IEamK---~~~eI~Ap~sGvV~~Ilve~Gd~V 275 (286)
+..|.+-..|+++-++|+|| ..++|.-+-.|+|.+|.|.+.+..
T Consensus 49 lrsGm~t~nG~~v~~~qA~~~d~v~lvI~G~~~G~V~rI~V~d~~i~ 95 (171)
T PF06572_consen 49 LRSGMQTANGNIVSFFQAMKDDQVKLVISGDPKGTVSRIEVMDPDIK 95 (171)
T ss_dssp EEEEEEEETTEEEEEEEEEETTEEEEEEEE----BEEEEEE--TTS-
T ss_pred EecceecCCCCeEEeeeeecCCeEEEEEecCCCCcEEEEEEeccccC
Confidence 46788899999999999975 567788787999999999998874
No 276
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=22.62 E-value=85 Score=25.81 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=23.1
Q ss_pred ecCCCeEEEEEEc-CCCCccCCCCeEEEEc
Q 023188 257 EADQSGTIAEILA-EDGKSVSVDTPLLVIV 285 (286)
Q Consensus 257 ~Ap~sGvV~~Ilv-e~Gd~V~~G~~L~~Ie 285 (286)
-...-|.|..+.. +.|+.|..|++|+.||
T Consensus 25 aq~~lG~i~~v~lp~~G~~V~~g~~i~~IE 54 (110)
T TIGR03077 25 MQENLGNILHIDLPSVGSSCKEGEVLVILE 54 (110)
T ss_pred HHHhcCCEEEEECCCCCCEEcCCCEEEEEE
Confidence 3345677888777 5699999999999986
No 277
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=22.46 E-value=91 Score=29.29 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 261 SGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 261 sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
+|.-.++++++|+.|..|++|++++
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEE
Confidence 5667789999999999999999985
No 278
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=22.05 E-value=68 Score=30.98 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=19.3
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
|+++.|+.|++||+|+.++..
T Consensus 89 ~~~~dG~~v~~G~~i~~i~G~ 109 (296)
T PRK09016 89 WHVDDGDVITANQTLFELTGP 109 (296)
T ss_pred EEcCCCCEecCCCEEEEEEEC
Confidence 899999999999999999863
No 279
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=21.78 E-value=3.3e+02 Score=19.93 Aligned_cols=40 Identities=10% Similarity=0.289 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcEEEEEeCCEEEEEEecc
Q 023188 111 SAISAFMTQVSDLVKLVDSRDIMELQMKQSDCELIVRKKE 150 (286)
Q Consensus 111 ~~i~~~i~eI~eLiklvd~s~I~ELelk~~d~~L~Irk~~ 150 (286)
...+.++...+++.+.++..++.++-++..+.++.|..-.
T Consensus 43 a~~a~~~~~~~~~~~~l~~~~~~~v~i~~~~~~i~i~~~~ 82 (91)
T PF03259_consen 43 AMAASLLAAAEKLAKELGEGELEQVRIETEKGEIIITPVG 82 (91)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSEEEEEEEESSEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEEECCCEEEEEEcC
Confidence 3456777888999999999999999999999999997643
No 280
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=21.40 E-value=1.3e+02 Score=21.71 Aligned_cols=28 Identities=11% Similarity=0.376 Sum_probs=17.6
Q ss_pred HHHHHHHhhCCCcEEEE--EeCCEEEEEEe
Q 023188 121 SDLVKLVDSRDIMELQM--KQSDCELIVRK 148 (286)
Q Consensus 121 ~eLiklvd~s~I~ELel--k~~d~~L~Irk 148 (286)
++|.+++++.+..-+++ ..+.++|.|+|
T Consensus 41 ~di~~~~~~~g~~~~~~~~~~~~~~i~I~K 70 (70)
T PF01206_consen 41 EDIPRWCEENGYEVVEVEEEGGEYRILIRK 70 (70)
T ss_dssp HHHHHHHHHHTEEEEEEEESSSSEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCEEEEEEEC
Confidence 44555666666554444 66678888876
No 281
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=21.24 E-value=73 Score=30.34 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=19.2
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
|+++.|+.|++|++|+.++..
T Consensus 62 ~~~~dG~~v~~g~~i~~i~G~ 82 (278)
T PRK08385 62 VRKRDGEEVKAGEVILELKGN 82 (278)
T ss_pred EEcCCCCEecCCCEEEEEEEC
Confidence 789999999999999999863
No 282
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=20.84 E-value=80 Score=31.19 Aligned_cols=49 Identities=16% Similarity=0.054 Sum_probs=34.3
Q ss_pred CCCEEecCCeEEEEEecCeee-eEecCCCeEEEEEEcCCCCccCCCCeEEEEc
Q 023188 234 VGDKVQKGQVVCIIEAMKLMN-EIEADQSGTIAEILAEDGKSVSVDTPLLVIV 285 (286)
Q Consensus 234 vGd~V~~Gq~L~~IEamK~~~-eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~~Ie 285 (286)
.+..|++||.++.-+-.-... -.+++. .+ +..++.|+.|.+||.|..+.
T Consensus 290 ~~~~v~KGeElG~F~~GSTVVllFe~~~--~~-~~~l~~g~~Vr~Gq~lg~~~ 339 (353)
T PTZ00403 290 SYKSVEVGDEVGEFRMGSSIVVIFENKK--NF-SWNVKPNQTVSVGQRLGGVG 339 (353)
T ss_pred CCCcccccceeeEeccCCeEEEEEeCCC--cC-CcccCCCCEEEeeeeccccC
Confidence 356899999999887644332 223332 23 55678999999999998764
No 283
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=20.74 E-value=2.7e+02 Score=20.98 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=34.6
Q ss_pred cceEEEccCCCCCCccccCCCEEec--CCeEEEEEecCee-eeEecCCCeEEEEEEcCCCCccCCCCeEE
Q 023188 216 MAGTFYRCPAPGEPAFVKVGDKVQK--GQVVCIIEAMKLM-NEIEADQSGTIAEILAEDGKSVSVDTPLL 282 (286)
Q Consensus 216 ~~G~~~~~p~~~~~~~VkvGd~V~~--Gq~L~~IEamK~~-~eI~Ap~sGvV~~Ilve~Gd~V~~G~~L~ 282 (286)
..|++.. =.++.||+|.- ....+.|..+.+. .++..-..|.-..+.+.+.+.|..|+.|.
T Consensus 18 v~Gkv~~-------G~v~~Gd~v~~~P~~~~~~V~si~~~~~~~~~a~aGd~v~l~l~~~~~i~~G~vl~ 80 (81)
T cd03695 18 YAGTIAS-------GSIRVGDEVVVLPSGKTSRVKSIETFDGELDEAGAGESVTLTLEDEIDVSRGDVIV 80 (81)
T ss_pred EEEEEcc-------ceEECCCEEEEcCCCCeEEEEEEEECCcEeCEEcCCCEEEEEECCccccCCCCEEe
Confidence 5666665 35667776632 1222333333221 23444456777777877777788898875
No 284
>PRK06148 hypothetical protein; Provisional
Probab=20.65 E-value=54 Score=36.44 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=15.5
Q ss_pred ccCCCEEecCCeEEEEEec
Q 023188 232 VKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 232 VkvGd~V~~Gq~L~~IEam 250 (286)
|++||.|++||.||.+-+.
T Consensus 505 ~~~G~~v~~G~~ig~~G~~ 523 (1013)
T PRK06148 505 LKPGDRLAAGELFGAMGDA 523 (1013)
T ss_pred CCCCCcccccchhhhccCc
Confidence 6899999999999977543
No 285
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=20.64 E-value=75 Score=30.25 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=19.3
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
|+++.|+.|++|++|+.++..
T Consensus 64 ~~~~dG~~v~~g~~i~~~~G~ 84 (277)
T TIGR01334 64 YAVPSGSRALAGTLLLEAKGS 84 (277)
T ss_pred EEeCCCCEeCCCCEEEEEEec
Confidence 899999999999999999863
No 286
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=20.63 E-value=78 Score=29.74 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=19.2
Q ss_pred ccccCCCEEecCCeEEEEEec
Q 023188 230 AFVKVGDKVQKGQVVCIIEAM 250 (286)
Q Consensus 230 ~~VkvGd~V~~Gq~L~~IEam 250 (286)
|+++.|+.|++|++|+.|+-.
T Consensus 58 ~~~~dG~~v~~g~~i~~i~G~ 78 (265)
T TIGR00078 58 WLVKDGDRVEPGEVVAEVEGP 78 (265)
T ss_pred EEeCCCCEecCCCEEEEEEEc
Confidence 789999999999999999863
No 287
>PLN02964 phosphatidylserine decarboxylase
Probab=20.57 E-value=94 Score=33.19 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=28.2
Q ss_pred CCccCCcceEEEccCCCCCCccccCCCEEecCCeEEEEEecCee
Q 023188 210 PPLKCPMAGTFYRCPAPGEPAFVKVGDKVQKGQVVCIIEAMKLM 253 (286)
Q Consensus 210 ~~I~AP~~G~~~~~p~~~~~~~VkvGd~V~~Gq~L~~IEamK~~ 253 (286)
..|-|-++|.+.- .+++|+.|++||.++..+=..-.
T Consensus 555 v~VGA~~VgsI~~--------~~~~g~~v~KGdE~G~F~fGGST 590 (644)
T PLN02964 555 VAIGATMVGSITF--------VKKEGDHVKKGDELGYFSFGGST 590 (644)
T ss_pred EEEeeeEeeEEEE--------EecCCCEEccCcEeeeeecCCce
Confidence 3577778888864 57889999999999999875333
No 288
>PRK00624 glycine cleavage system protein H; Provisional
Probab=20.28 E-value=1e+02 Score=25.57 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=23.9
Q ss_pred eEecCCCeEEEEEEc-CCCCccCCCCeEEEEc
Q 023188 255 EIEADQSGTIAEILA-EDGKSVSVDTPLLVIV 285 (286)
Q Consensus 255 eI~Ap~sGvV~~Ilv-e~Gd~V~~G~~L~~Ie 285 (286)
+.-...-|.|..+.. +.|+.|..|++|+.|+
T Consensus 25 ~~a~~~lG~i~~v~lp~~G~~V~~g~~i~~IE 56 (114)
T PRK00624 25 SKMQENLGNILHIDLPSVGSFCKEGEVLVILE 56 (114)
T ss_pred HHHHHhcCCEEEEECCCCCCEEeCCCEEEEEE
Confidence 333445677888777 5599999999999986
Done!